BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780151|ref|YP_003064564.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter asiaticus str. psy62] (408 letters) Database: nr 13,984,884 sequences; 4,792,584,752 total letters Searching..................................................done Results from round 1 >gi|254780151|ref|YP_003064564.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter asiaticus str. psy62] gi|254039828|gb|ACT56624.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter asiaticus str. psy62] gi|255957544|dbj|BAH96607.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957840|dbj|BAH96814.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957850|dbj|BAH96823.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957860|dbj|BAH96832.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957870|dbj|BAH96841.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957880|dbj|BAH96850.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957890|dbj|BAH96859.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957900|dbj|BAH96868.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957910|dbj|BAH96877.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957920|dbj|BAH96886.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957930|dbj|BAH96895.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957940|dbj|BAH96904.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957950|dbj|BAH96913.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957960|dbj|BAH96922.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957970|dbj|BAH96931.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957980|dbj|BAH96940.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957990|dbj|BAH96949.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255958000|dbj|BAH96958.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255958010|dbj|BAH96967.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255958020|dbj|BAH96976.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255958030|dbj|BAH96985.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255958040|dbj|BAH96994.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255958050|dbj|BAH97003.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255958060|dbj|BAH97012.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255958070|dbj|BAH97021.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255958080|dbj|BAH97030.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255958090|dbj|BAH97039.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255958100|dbj|BAH97048.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255958110|dbj|BAH97057.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255958120|dbj|BAH97066.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|283362130|dbj|BAI65917.1| predicted tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Candidatus Liberibacter asiaticus] gi|283362140|dbj|BAI65926.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus Liberibacter asiaticus] gi|283362150|dbj|BAI65935.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus Liberibacter asiaticus] gi|283362160|dbj|BAI65944.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus Liberibacter asiaticus] gi|283362170|dbj|BAI65953.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus Liberibacter asiaticus] gi|283362180|dbj|BAI65962.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus Liberibacter asiaticus] gi|283362190|dbj|BAI65971.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus Liberibacter asiaticus] gi|283362200|dbj|BAI65980.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus Liberibacter asiaticus] gi|283362210|dbj|BAI65989.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus Liberibacter asiaticus] gi|283362220|dbj|BAI65998.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus Liberibacter asiaticus] gi|283362230|dbj|BAI66007.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus Liberibacter asiaticus] Length = 408 Score = 830 bits (2144), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/408 (100%), Positives = 408/408 (100%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA Sbjct: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC Sbjct: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT Sbjct: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA Sbjct: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV Sbjct: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA Sbjct: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM 408 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM Sbjct: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM 408 >gi|140063954|gb|ABO82466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Liberibacter asiaticus] Length = 408 Score = 829 bits (2141), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/408 (99%), Positives = 408/408 (100%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVT+QLYNSRKA Sbjct: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTVQLYNSRKA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC Sbjct: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT Sbjct: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA Sbjct: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV Sbjct: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA Sbjct: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM 408 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM Sbjct: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM 408 >gi|110808325|gb|ABG91067.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Liberibacter asiaticus] Length = 357 Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/357 (99%), Positives = 357/357 (100%) Query: 52 LQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAG 111 +QLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAG Sbjct: 1 VQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAG 60 Query: 112 ETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER 171 ETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER Sbjct: 61 ETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER 120 Query: 172 DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDV 231 DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDV Sbjct: 121 DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDV 180 Query: 232 VKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVI 291 VKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVI Sbjct: 181 VKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVI 240 Query: 292 VGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD 351 VGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD Sbjct: 241 VGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD 300 Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM 408 FEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM Sbjct: 301 FEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM 357 >gi|315122753|ref|YP_004063242.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496155|gb|ADR52754.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 398 Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/392 (83%), Positives = 360/392 (91%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLD DKNPKDMRVVVAMSGGVDSS+VAALLKRDGYDV+GVTLQLYN K SKRKGSCC Sbjct: 1 MNSLDFDKNPKDMRVVVAMSGGVDSSIVAALLKRDGYDVVGVTLQLYNGGKESKRKGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQDVYDARRVCD I+V HYVFDYEERF NAVIVPFA++Y AGETPLPCVDCNRTVKF D Sbjct: 61 AGQDVYDARRVCDAIDVPHYVFDYEERFHNAVIVPFANAYIAGETPLPCVDCNRTVKFLD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LLSV R+LGADVLATGHYIRSR +VG DG RRRIMCRP+D ERDQSYFLFATTQQQLCDL Sbjct: 121 LLSVMRRLGADVLATGHYIRSRFHVGADGVRRRIMCRPVDSERDQSYFLFATTQQQLCDL 180 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG+MKKESVRDLAREM L++ADKSDSQDICFVQ+GKYFD+VK++++ I+LEG+IVHL Sbjct: 181 RFPLGEMKKESVRDLAREMKLEVADKSDSQDICFVQKGKYFDIVKKLSSDISLEGEIVHL 240 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +GQ+LGRHNGIINYTIGQRRGLG+A +PLFVVYLDK SRVIVGPRE+LEV RIYLREI Sbjct: 241 SGQVLGRHNGIINYTIGQRRGLGIAASDPLFVVYLDKQGSRVIVGPREALEVRRIYLREI 300 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGDG FED VVDGFKCF KIRSSQDPV VFV+R+D GVYVDFE SE GVA+GQACVFY Sbjct: 301 NWLGDGSFEDVVVDGFKCFAKIRSSQDPVSVFVKRDDSGVYVDFENSEEGVAAGQACVFY 360 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 +SDSN+AR+LGGG IS SKRSD VE+SL S++ Sbjct: 361 SSDSNDARILGGGFISCSKRSDKVEKSLFSIM 392 >gi|222086955|ref|YP_002545489.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein [Agrobacterium radiobacter K84] gi|254811443|sp|B9J9F7|MNMA_AGRRK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|221724403|gb|ACM27559.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein [Agrobacterium radiobacter K84] Length = 399 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 240/393 (61%), Positives = 298/393 (75%), Gaps = 1/393 (0%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +N+LD DK P+D RVVVAMSGGVDSSVVA +LKR GYDV+G+TLQLY+ A R GSCC Sbjct: 1 MNTLDFDKKPEDTRVVVAMSGGVDSSVVAGILKRQGYDVLGITLQLYDHGAAVHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRVC+TI + HYV DYE+RFR VI PFA SY AGETP+PCV CN+TVKF+D Sbjct: 61 AGQDIDDARRVCETIGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFAD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRSR D RR + RP D +RDQSYFLFATTQ+Q+ L Sbjct: 121 LLATAKELGADALATGHYIRSRPNPSADHPGRRALYRPADADRDQSYFLFATTQEQIDYL 180 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG M K R LA EMGL +A K+DSQDICFV QGKY DV+ ++ AL G+IVHL Sbjct: 181 RFPLGGMPKAETRALAEEMGLVVAKKADSQDICFVPQGKYSDVIAKLKPNAALAGEIVHL 240 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LGRH GI++YTIGQRRG+GVA G+PL+VV+LD S RVIVGP+E+LE HR+YLR++ Sbjct: 241 DGRVLGRHEGILHYTIGQRRGIGVATGDPLYVVFLDARSRRVIVGPKEALETHRVYLRDV 300 Query: 309 NWLGD-GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 NWLGD L E A +GF C+ K+RS++ P P ++ + DG+YVD E GVA GQAC Sbjct: 301 NWLGDEPLLEAASGEGFACYAKVRSTRPPEPAVLRADKDGIYVDLTIGEAGVAPGQACAL 360 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 Y++ ++ARV GGG I S+R E SL +++ Sbjct: 361 YSAPGDDARVYGGGFIERSEREPMAEASLKALL 393 >gi|222149632|ref|YP_002550589.1| tRNA-specific 2-thiouridylase MnmA [Agrobacterium vitis S4] gi|221736614|gb|ACM37577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Agrobacterium vitis S4] Length = 402 Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust. Identities = 237/392 (60%), Positives = 295/392 (75%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +N+LD DK P+D RVVVAMSGGVDSSVVA +LKR+GYDV+G+TLQLY+ A R GSCC Sbjct: 5 VNTLDFDKRPEDTRVVVAMSGGVDSSVVAGILKREGYDVLGITLQLYDHGAAVHRAGSCC 64 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRVC+T+ + HYV DYE+RFR+ VI PF SY AGETP+PCV CN+TVKF+D Sbjct: 65 AGQDIDDARRVCETLGIPHYVLDYEQRFRDTVINPFMDSYIAGETPIPCVACNQTVKFAD 124 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R+LGAD LATGHYIRSR + R + RP+D ERDQSYFLFATTQ+Q+ L Sbjct: 125 LLATARELGADALATGHYIRSRATPLPNDPGHRALFRPIDSERDQSYFLFATTQEQIDYL 184 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K R LA +MGL +A K+DSQDICFV QGKY D++ ++ AL GDIVHL Sbjct: 185 RFPLGGLSKAETRKLAEDMGLVVAQKADSQDICFVPQGKYADIINKLKPNAALSGDIVHL 244 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG+H GI++YTIGQR+GLGVA GEPL+VVYLD S RVIVGPRE+LE R+YLR+I Sbjct: 245 DGRVLGQHEGILHYTIGQRKGLGVATGEPLYVVYLDARSRRVIVGPREALETRRVYLRDI 304 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD ED GF CF K+RS++ P P + ++ G+YVD + E GVA GQACV Y Sbjct: 305 NWLGDRAIEDEASGGFACFAKVRSTRPPAPAHLHADETGIYVDLDMGEAGVAPGQACVLY 364 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 + + +ARV GGG I S+R E L +++ Sbjct: 365 SGEGADARVYGGGFIERSERQAEAETFLKALL 396 >gi|190893264|ref|YP_001979806.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein [Rhizobium etli CIAT 652] gi|229486418|sp|B3PYW4|MNMA_RHIE6 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|190698543|gb|ACE92628.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein [Rhizobium etli CIAT 652] Length = 408 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 235/396 (59%), Positives = 296/396 (74%), Gaps = 1/396 (0%) Query: 6 ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65 A LN+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+ A R G Sbjct: 7 APPLNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAG 66 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 SCCAGQD+ DARRVC+T+ + HYV DYE+RFR VI PFA SY AGETP+PCV CN+TVK Sbjct: 67 SCCAGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVK 126 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F+DLL+ ++LGAD LATGHYIRSR + RR + RP D +RDQSYFLFATTQ+Q+ Sbjct: 127 FADLLATAKELGADALATGHYIRSRPNPSPEHPGRRALFRPADADRDQSYFLFATTQEQI 186 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 LRFPLG + K R LA EMGL +A K+DSQDICFV QGKY D++ ++ AL G+I Sbjct: 187 DYLRFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEI 246 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 VHL+G++LG H GI+++TIGQRRG+G+A GEPL+VVYLD S RVIVGP+E+LE HR+YL Sbjct: 247 VHLDGRVLGTHEGILHFTIGQRRGIGIATGEPLYVVYLDARSRRVIVGPKEALETHRVYL 306 Query: 306 REINWLGD-GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 R++NWLGD L E A +GF C+ K+RS++ P P + + G YVD E G+A GQA Sbjct: 307 RDVNWLGDETLGEAASGEGFACYAKVRSTRAPAPAVLHVDATGTYVDLTVGEAGIAPGQA 366 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 C Y++ ++ARV GGG I S+R A E SL +++ Sbjct: 367 CALYSAPGDDARVFGGGFIERSEREPAAEASLKALL 402 >gi|327192984|gb|EGE59899.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein [Rhizobium etli CNPAF512] Length = 399 Score = 505 bits (1301), Expect = e-141, Method: Compositional matrix adjust. Identities = 234/393 (59%), Positives = 295/393 (75%), Gaps = 1/393 (0%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +N+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+ A R GSCC Sbjct: 1 MNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRVC+T+ + HYV DYE+RFR VI PFA SY AGETP+PCV CN+TVKF+D Sbjct: 61 AGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFAD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRSR + RR + RP D +RDQSYFLFATTQ+Q+ L Sbjct: 121 LLATAKELGADALATGHYIRSRPNPSPEHPGRRALFRPADADRDQSYFLFATTQEQIDYL 180 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K R LA EMGL +A K+DSQDICFV QGKY D++ ++ AL G+IVHL Sbjct: 181 RFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEIVHL 240 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG H GI+++TIGQRRG+G+A GEPL+VVYLD S RVIVGP+E+LE HR+YLR++ Sbjct: 241 DGRVLGSHEGILHFTIGQRRGIGIATGEPLYVVYLDARSRRVIVGPKEALETHRVYLRDV 300 Query: 309 NWLGD-GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 NWLGD L E A DGF C+ K+RS++ P P + + G YVD E G+A GQAC Sbjct: 301 NWLGDETLAEAASGDGFACYAKVRSTRAPAPAVLHVDATGTYVDLTVGEAGIAPGQACAL 360 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 Y++ ++ARV GGG I S+R A E SL +++ Sbjct: 361 YSAPGDDARVFGGGFIERSEREPAAEASLKALL 393 >gi|86359043|ref|YP_470935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhizobium etli CFN 42] gi|123510891|sp|Q2K4M8|MNMA_RHIEC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|86283145|gb|ABC92208.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferaseprotein [Rhizobium etli CFN 42] Length = 408 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 233/396 (58%), Positives = 295/396 (74%), Gaps = 1/396 (0%) Query: 6 ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65 A LN+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+ A R G Sbjct: 7 APPLNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAG 66 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 SCCAGQD+ DAR VC+T+ + HYV DYE+RFR VI PFA SY AGETP+PCV CN+TVK Sbjct: 67 SCCAGQDIDDARHVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVK 126 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F+DLL+ ++LGAD LATGHYIRSR + RR + RP D +RDQSYFLFATTQ+Q+ Sbjct: 127 FADLLATAKELGADALATGHYIRSRPNPSSEHPGRRALFRPADADRDQSYFLFATTQEQI 186 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 LRFPLG + K R LA EMGL +A K+DSQDICFV QGKY D++ ++ AL G+I Sbjct: 187 DYLRFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEI 246 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 VHL+G++LG H GI+++TIGQRRG+G+A GEPL+VVYLD S RVIVGP+E+LE HR+YL Sbjct: 247 VHLDGRVLGSHEGILHFTIGQRRGIGIATGEPLYVVYLDARSRRVIVGPKEALETHRVYL 306 Query: 306 REINWLGD-GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 R++NWLGD L E A +GF C+ K+RS++ P P + + G YVD E G+A GQA Sbjct: 307 RDVNWLGDETLAEAASGEGFACYAKVRSTRAPAPAVLHVDATGTYVDLTIGEAGIAPGQA 366 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 C Y++ ++ARV GGG I S+R + E SL +++ Sbjct: 367 CALYSAPGDDARVFGGGFIERSEREPSAEASLKALL 402 >gi|218675488|ref|ZP_03525157.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhizobium etli GR56] Length = 399 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 231/393 (58%), Positives = 294/393 (74%), Gaps = 1/393 (0%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +N+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+ A R GSCC Sbjct: 1 MNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRVC+T+ + HYV DYE+RFR VI PFA SY AGETP+PCV CN+TVKF+D Sbjct: 61 AGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFAD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRSR + RR + RP D +RDQSYFLFATTQ+Q+ L Sbjct: 121 LLATAKELGADALATGHYIRSRPNPSLEHPGRRALFRPADADRDQSYFLFATTQEQIDYL 180 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K R LA EMGL +A K+DSQDICFV QGKY D++ ++ AL G+IVHL Sbjct: 181 RFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEIVHL 240 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG H GI+++TIGQRRG+G+A GEPL+VVYLD S RVIVGP+E+LE HR+YLR++ Sbjct: 241 DGRVLGSHEGILHFTIGQRRGIGIATGEPLYVVYLDARSRRVIVGPKEALETHRVYLRDV 300 Query: 309 NWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 NWLGD DA +GF C+ K+RS++ P P + + G YVD E G+A GQAC Sbjct: 301 NWLGDETLADAASGEGFACYAKVRSTRAPAPAVLHVDSTGTYVDLTVGEAGIAPGQACAL 360 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 Y++ ++ARV GGG I S+R + E SL +++ Sbjct: 361 YSAPGDDARVFGGGFIERSEREPSAEASLKALL 393 >gi|209550765|ref|YP_002282682.1| tRNA-specific 2-thiouridylase MnmA [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226704775|sp|B5ZNK8|MNMA_RHILW RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|209536521|gb|ACI56456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 399 Score = 501 bits (1291), Expect = e-140, Method: Compositional matrix adjust. Identities = 231/393 (58%), Positives = 294/393 (74%), Gaps = 1/393 (0%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +N+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+ A R GSCC Sbjct: 1 MNTLDFDKQPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRVC+T+ + HYV DYE+RFR VI PFA SY AGETP+PCV CN+TVKF+D Sbjct: 61 AGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFAD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRSR + RR + RP D +RDQSYFLFATTQ+Q+ L Sbjct: 121 LLATAKELGADALATGHYIRSRPNPSPEHPGRRALYRPADADRDQSYFLFATTQEQIDYL 180 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K R LA EMGL +A K+DSQDICFV QGKY D++ ++ AL G+IVHL Sbjct: 181 RFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEIVHL 240 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG H GI+++TIGQRRG+G+A GEPL+VV+LD S RVIVGP+E+LE HR+YLR++ Sbjct: 241 DGRVLGTHEGILHFTIGQRRGIGIATGEPLYVVFLDARSRRVIVGPKEALETHRVYLRDV 300 Query: 309 NWLGD-GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 NWLGD L + A DGF C+ K+RS++ P P + + G YVD E G+A GQAC Sbjct: 301 NWLGDETLAQAATGDGFACYAKVRSTRAPAPAVLHIDATGTYVDLTVGEAGIAPGQACAL 360 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 Y++ + ARV GGG I S+R + E SL +++ Sbjct: 361 YSAPGDNARVFGGGFIERSEREPSAEASLKALL 393 >gi|325063117|gb|ADY66807.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Agrobacterium sp. H13-3] Length = 402 Score = 501 bits (1290), Expect = e-140, Method: Compositional matrix adjust. Identities = 233/392 (59%), Positives = 295/392 (75%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +N+LD DK P+D R+VVAMSGGVDSSVVA +LKR+GYDV+G+TLQLY+ A R GSCC Sbjct: 5 VNTLDFDKRPEDTRIVVAMSGGVDSSVVAGILKREGYDVLGITLQLYDHGAAVHRAGSCC 64 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRVC+T+ + HYV DYE RFR VI PFA +YA GETP+PCV CN+TVKF+D Sbjct: 65 AGQDIDDARRVCETLGIPHYVLDYEARFRETVINPFAEAYAMGETPIPCVACNQTVKFAD 124 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRSR RR + RP+D +RDQS+FLFATTQ+Q+ L Sbjct: 125 LLATAQELGADALATGHYIRSRPNPVAGQPGRRALYRPIDSDRDQSWFLFATTQEQIDYL 184 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K R LA +MGL +A K+DSQDICFV QGKY D++ ++ AL GDIVHL Sbjct: 185 RFPLGGLSKAETRALAEDMGLVVAKKADSQDICFVPQGKYTDIINKLKPNAALAGDIVHL 244 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LGRH+GI++YTIGQRRG+GVA GEPL+VV+LD RVIVGPRE+LE R+YLR++ Sbjct: 245 DGRVLGRHDGIVHYTIGQRRGIGVATGEPLYVVHLDARGRRVIVGPREALETRRVYLRDM 304 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGDG D GF CF K+RS++ P + +++G+YVD E GVA GQACV Y Sbjct: 305 NWLGDGALADEAGQGFACFAKVRSTRPPTEAMLHADENGIYVDLMTGEAGVAPGQACVLY 364 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 ++ +ARV GGG I S+RS E SL +++ Sbjct: 365 SAPGADARVYGGGFIERSERSVDAEASLKALL 396 >gi|24638313|sp|Q8U9M5|MNMA_AGRT5 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 398 Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust. Identities = 233/392 (59%), Positives = 294/392 (75%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +N+LD DK P+D R+VVAMSGGVDSSVVA +LKR+GYDV+G+TLQLY+ A R GSCC Sbjct: 1 MNTLDFDKRPEDTRIVVAMSGGVDSSVVAGILKREGYDVLGITLQLYDHGAAVHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRVC+T+ + HYV DYE RFR VI PFA +YA GETP+PCV CN+TVKF+D Sbjct: 61 AGQDIDDARRVCETLGIPHYVLDYEARFRETVINPFAEAYAMGETPIPCVACNQTVKFAD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRSR RR + RP+D +RDQS+FLFATTQ+Q+ L Sbjct: 121 LLATAQELGADALATGHYIRSRPNPVSGQPGRRALYRPIDSDRDQSWFLFATTQEQIDYL 180 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K R LA EMGL +A K+DSQDICFV QGKY D++ ++ AL GDIVHL Sbjct: 181 RFPLGGLSKAETRALAEEMGLVVAKKADSQDICFVPQGKYTDIINKLKPNAALAGDIVHL 240 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LGRH+GI++YTIGQRRG+GVA GEPL+VV+LD RVIVGPRE+LE R+YLR++ Sbjct: 241 DGRVLGRHDGIVHYTIGQRRGIGVATGEPLYVVHLDARGRRVIVGPREALETRRVYLRDM 300 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGDG GF CF K+RS++ P + +++G+YVD E GVA GQACV Y Sbjct: 301 NWLGDGALAADAGQGFTCFAKVRSTRPPTEAVLHADENGIYVDLMTGEAGVAPGQACVLY 360 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 ++ +ARV GGG I S+RS E SL +++ Sbjct: 361 SAPGPDARVYGGGFIDRSERSVDAEASLKALL 392 >gi|15966466|ref|NP_386819.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sinorhizobium meliloti 1021] gi|24638324|sp|Q92MB5|MNMA_RHIME RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|15075737|emb|CAC47292.1| Putative tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Sinorhizobium meliloti 1021] Length = 398 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 234/380 (61%), Positives = 287/380 (75%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLD D+ P+D RVVVAMSGGVDSSVVA LLKR+GYDV+G+TLQLY+ A R GSCC Sbjct: 1 MNSLDFDRKPEDTRVVVAMSGGVDSSVVAGLLKREGYDVLGITLQLYDHGAAVHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRVC+TI + HYV DYE RFR VI PFA SY AGETP+PCV CN+TVKF+D Sbjct: 61 AGQDIDDARRVCETIGIPHYVLDYEARFRETVINPFAESYIAGETPIPCVACNQTVKFAD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRSR +R + RP D ERDQSYFLFATTQ+Q+ L Sbjct: 121 LLATAKELGADALATGHYIRSRPSPKPRYAGQRALYRPADAERDQSYFLFATTQEQIDYL 180 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K R LA EMGL +A K+DSQDICFV QGKY D+V ++ AL G+IVHL Sbjct: 181 RFPLGGLPKSETRALAEEMGLVVAKKADSQDICFVPQGKYSDIVSKLKPNAALAGEIVHL 240 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG H GI++YTIGQRRG+GVA GEPL+VVYLD S RVIVGP+E+LE R+YLR++ Sbjct: 241 DGRVLGAHEGILHYTIGQRRGIGVATGEPLYVVYLDSRSRRVIVGPKEALETRRVYLRDV 300 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD E A GF+CF K+RS++ P P ++ + +G+YV+ + E GVA GQAC Y Sbjct: 301 NWLGDEELEAAAGQGFECFAKVRSTRRPAPAVLKSDAEGLYVELVEGEAGVAPGQACALY 360 Query: 369 TSDSNEARVLGGGIISGSKR 388 + +ARV GGG I S+R Sbjct: 361 SGTGEDARVYGGGFIRRSER 380 >gi|307300497|ref|ZP_07580277.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sinorhizobium meliloti BL225C] gi|307318362|ref|ZP_07597797.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sinorhizobium meliloti AK83] gi|306896044|gb|EFN26795.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sinorhizobium meliloti AK83] gi|306904663|gb|EFN35247.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sinorhizobium meliloti BL225C] Length = 398 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 234/380 (61%), Positives = 287/380 (75%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLD D+ P+D RVVVAMSGGVDSSVVA LLKR+GYDV+G+TLQLY+ A R GSCC Sbjct: 1 MNSLDFDRKPEDTRVVVAMSGGVDSSVVAGLLKREGYDVLGITLQLYDHGAAVHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRVC+TI + HYV DYE RFR VI PFA SY AGETP+PCV CN+TVKF+D Sbjct: 61 AGQDIDDARRVCETIGIPHYVLDYEARFRETVINPFAESYIAGETPIPCVACNQTVKFAD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRSR +R + RP D ERDQSYFLFATTQ+Q+ L Sbjct: 121 LLATAKELGADALATGHYIRSRPSPKPRYAGQRALYRPADAERDQSYFLFATTQEQIDYL 180 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K R LA EMGL +A K+DSQDICFV QGKY D+V ++ AL G+IVHL Sbjct: 181 RFPLGGLPKSETRALAEEMGLVVAKKADSQDICFVPQGKYSDIVSKLKPNAALAGEIVHL 240 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG H GI++YTIGQRRG+GVA GEPL+VVYLD S RVIVGP+E+LE R+YLR++ Sbjct: 241 DGRVLGAHEGILHYTIGQRRGIGVATGEPLYVVYLDARSRRVIVGPKEALETRRVYLRDV 300 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD E A GF+CF K+RS++ P P ++ + +G+YV+ + E GVA GQAC Y Sbjct: 301 NWLGDEELEAAAGQGFECFAKVRSTRRPAPAVLKSDAEGLYVELVEGEAGVAPGQACALY 360 Query: 369 TSDSNEARVLGGGIISGSKR 388 + +ARV GGG I S+R Sbjct: 361 SGTGEDARVYGGGFIRRSER 380 >gi|116253697|ref|YP_769535.1| tRNA-specific 2-thiouridylase MnmA [Rhizobium leguminosarum bv. viciae 3841] gi|205816894|sp|Q1MC84|MNMA_RHIL3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|115258345|emb|CAK09447.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhizobium leguminosarum bv. viciae 3841] Length = 408 Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust. Identities = 232/396 (58%), Positives = 292/396 (73%), Gaps = 1/396 (0%) Query: 6 ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65 A LN+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+ A R G Sbjct: 7 APSLNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAG 66 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 SCCAGQD+ DARRVC+T+ + HYV DYE+RFR VI PFA SY AGETP+PCV CN+TVK Sbjct: 67 SCCAGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVK 126 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F+DLL+ ++LGAD LATGHYIRS + RR + RP D +RDQSYFLFATTQ+Q+ Sbjct: 127 FADLLATAKELGADALATGHYIRSGRNPSPENPGRRALFRPADADRDQSYFLFATTQEQI 186 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 LRFPLG + K R LA EMGL +A K+DSQDICFV QGKY DV+ ++ AL G+I Sbjct: 187 DYLRFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDVITKLKPNAALAGEI 246 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 VHL+G++LG H GI+++TIGQRRG+G+A GEPL+VV+LD S RVIVGP+E+LE HR+YL Sbjct: 247 VHLDGRVLGTHEGILHFTIGQRRGIGIATGEPLYVVFLDARSRRVIVGPKEALETHRVYL 306 Query: 306 REINWLGD-GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 R++NWLGD L E A GF C+ K+RS++ P P + + G YVD E G+A GQA Sbjct: 307 RDVNWLGDETLAEAAAGKGFACYAKVRSTRAPAPAVLHIDATGTYVDLTVGEAGIAPGQA 366 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 C Y++ + ARV GGG I S+R + E L +++ Sbjct: 367 CALYSAPGDNARVFGGGFIERSEREPSAEACLKALL 402 >gi|241206171|ref|YP_002977267.1| tRNA-specific 2-thiouridylase MnmA [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860061|gb|ACS57728.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 403 Score = 498 bits (1282), Expect = e-139, Method: Compositional matrix adjust. Identities = 233/396 (58%), Positives = 292/396 (73%), Gaps = 1/396 (0%) Query: 6 ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65 A LN+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+ A R G Sbjct: 2 APSLNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAG 61 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 SCCAGQD+ DARRVC+T+ + HYV DYE+RFR VI PFA SY AGETP+PCV CN+TVK Sbjct: 62 SCCAGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVK 121 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F+DLL+ ++LGAD LATGHYIRS D RR + RP D +RDQSYFLFATTQ+Q+ Sbjct: 122 FADLLATAKELGADALATGHYIRSGRNPSPDNPGRRALFRPADADRDQSYFLFATTQEQI 181 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 LRFPLG + K R LA EMGL +A K+DSQDICFV QGKY DV+ ++ AL G+I Sbjct: 182 DYLRFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDVITKLKPNAALAGEI 241 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 VHL+G++LG H GI+++TIGQRRG+G+A GEPL+VV+LD S RVIVGP+E+LE HR+YL Sbjct: 242 VHLDGRVLGSHEGILHFTIGQRRGIGIATGEPLYVVFLDARSRRVIVGPKEALETHRVYL 301 Query: 306 REINWLGD-GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 R++NWLGD L E A GF C+ K+RS++ P P + + G YVD E G+A GQA Sbjct: 302 RDVNWLGDETLAEAAAGKGFACYAKVRSTRAPAPAVLHIDAIGTYVDLTVGEAGIAPGQA 361 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 C Y++ + ARV GGG I S+R + E L +++ Sbjct: 362 CALYSAPGDNARVFGGGFIERSEREPSAEACLKALL 397 >gi|227823283|ref|YP_002827255.1| tRNA-specific 2-thiouridylase MnmA [Sinorhizobium fredii NGR234] gi|254811457|sp|C3MI00|MNMA_RHISN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|227342284|gb|ACP26502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sinorhizobium fredii NGR234] Length = 398 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 233/380 (61%), Positives = 287/380 (75%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLD D+ P+D RVVVAMSGGVDSSVVA LLKR+GYDV+G+TLQLY+ A R GSCC Sbjct: 1 MNSLDFDRKPEDTRVVVAMSGGVDSSVVAGLLKREGYDVLGITLQLYDHGAAVHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRVC+T+ + HYV DYE RFR VI PFA SY AGETP+PCV CN+TVKF+D Sbjct: 61 AGQDIDDARRVCETLGIPHYVLDYEARFRETVINPFAESYIAGETPIPCVACNQTVKFAD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRSR + +R + RP D ERDQSYFLFATTQ+Q+ L Sbjct: 121 LLATAKELGADALATGHYIRSRPSPKPRYQGQRALYRPTDAERDQSYFLFATTQEQIDYL 180 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG++ K R LA EMGL +A K+DSQDICFV QGKY D+V ++ AL G+IVHL Sbjct: 181 RFPLGNLSKPETRALAEEMGLVVAKKADSQDICFVPQGKYSDIVSKLKPNAALGGEIVHL 240 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG H GI++YTIGQRRG+GVA GEPL+VVYLD S RVIVGP+E+LE R+YLR++ Sbjct: 241 DGRVLGTHEGILHYTIGQRRGIGVATGEPLYVVYLDARSRRVIVGPKEALETRRVYLRDV 300 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD + A GF CF K+RS++ P P ++ + DG+YV+ E GVA GQAC Y Sbjct: 301 NWLGDEEIDAAASRGFACFAKVRSTRQPAPAEMKCDADGIYVELVDGEAGVAPGQACALY 360 Query: 369 TSDSNEARVLGGGIISGSKR 388 + +ARV GGG I S+R Sbjct: 361 SGTGEDARVYGGGFIRKSER 380 >gi|150397798|ref|YP_001328265.1| tRNA-specific 2-thiouridylase MnmA [Sinorhizobium medicae WSM419] gi|205828972|sp|A6UCQ0|MNMA_SINMW RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|150029313|gb|ABR61430.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sinorhizobium medicae WSM419] Length = 398 Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust. Identities = 232/380 (61%), Positives = 286/380 (75%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLD D+ P+D RVVVAMSGGVDSSVVA LLKR+GYDV+G+TLQLY+ A R GSCC Sbjct: 1 MNSLDFDRKPEDTRVVVAMSGGVDSSVVAGLLKREGYDVLGITLQLYDHGAAVHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRVC+TI + HYV DYE RFR VI PFA SY AGETP+PCV CN+TVKF+D Sbjct: 61 AGQDIDDARRVCETIGIPHYVLDYEARFRETVINPFAESYIAGETPIPCVACNQTVKFAD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRSR +R + RP D +RDQSYFLFATTQ+Q+ L Sbjct: 121 LLATAKELGADALATGHYIRSRPSPMPRYPGQRALYRPADADRDQSYFLFATTQEQIDYL 180 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K R LA EMGL +A K+DSQDICFV QGKY D+V ++ AL G+IVHL Sbjct: 181 RFPLGGLPKSETRALAEEMGLVVAKKADSQDICFVPQGKYSDIVSKLKPNAALAGEIVHL 240 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG H GI++YTIGQRRG+GVA GEPL+VVYLD S RV+VGP+E+LE R+YLR++ Sbjct: 241 DGRVLGAHEGILHYTIGQRRGIGVATGEPLYVVYLDARSRRVVVGPKEALETRRVYLRDV 300 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD E A GF+CF K+RS++ P P + + +G+YV+ + E GVA GQAC Y Sbjct: 301 NWLGDEELEAAARSGFECFAKVRSTRRPAPAVLSCDAEGLYVELVEGEAGVAPGQACALY 360 Query: 369 TSDSNEARVLGGGIISGSKR 388 + +ARV GGG I S+R Sbjct: 361 SGIGEDARVYGGGFIRRSER 380 >gi|319408925|emb|CBI82582.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella schoenbuchensis R1] Length = 409 Score = 492 bits (1266), Expect = e-137, Method: Compositional matrix adjust. Identities = 237/392 (60%), Positives = 292/392 (74%), Gaps = 5/392 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL P++ R+VVAMSGGVDSSVVA LLK++GYDV+G+TLQLY+ A+ R GSCC Sbjct: 3 LNSLDLPGQPENSRIVVAMSGGVDSSVVAGLLKKEGYDVVGITLQLYDHGVATHRVGSCC 62 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARR+ +T+N+ HYV DYEERFR AVI PF SY GETP+PCV CN+TVKFSD Sbjct: 63 AGQDIEDARRIAETLNIPHYVLDYEERFREAVIDPFTESYTHGETPVPCVACNQTVKFSD 122 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R+LGAD LATGHYIRSR R + RP+D ERDQSYFLFATTQ+Q+ L Sbjct: 123 LLATARELGADALATGHYIRSR-----SCGAHRALFRPLDAERDQSYFLFATTQEQIDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGD+ K VR++A EMG +ADK DSQDICFV QGKY DV+ ++ G I+H+ Sbjct: 178 RFPLGDLPKARVREIAAEMGFVVADKHDSQDICFVPQGKYSDVITKLRPESTNPGIIMHI 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 NGQILG H+GIINYT+GQRRG+G+A GE L+VVYLD ++RVIVGPRE LE H+++LR++ Sbjct: 238 NGQILGEHSGIINYTVGQRRGIGIATGEALYVVYLDAENARVIVGPREMLETHKLFLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD ++ +G VKIRS++ P P + + VD +SE GVA GQACVFY Sbjct: 298 NWLGDEQLDNFPPNGIDVVVKIRSTRPPRPARLHYQNGVFSVDLLESESGVAPGQACVFY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 +SNEARVLGGG I+ S+RS E L V+ Sbjct: 358 NENSNEARVLGGGFITHSERSAGAEAMLKQVL 389 >gi|319781789|ref|YP_004141265.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167677|gb|ADV11215.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 396 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 231/388 (59%), Positives = 287/388 (73%), Gaps = 5/388 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLDL P++ R+VVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+ A+ R GSCC Sbjct: 1 MNSLDLPGRPENTRIVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV +T+ + HYV DYEERFR AVI PFA SY AGETP+PCV CN+TVKF+D Sbjct: 61 AGQDIDDARRVSETLGIPHYVLDYEERFRKAVIDPFAESYVAGETPIPCVSCNQTVKFAD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRS G +G +R + RP+D +RDQSYFLFATTQ Q+ L Sbjct: 121 LLATAKELGADALATGHYIRS----GANGAQRALY-RPVDADRDQSYFLFATTQAQIDYL 175 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K VR +A EMGL +A K DSQDICFV QGKY D++ ++ A GDIVH+ Sbjct: 176 RFPLGGLSKPQVRAIAEEMGLAVAAKQDSQDICFVPQGKYSDIIAKLKPTAANPGDIVHI 235 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LGRH GI+ YTIGQRRG+G+A GEPL+VV+LD + +RV+VGPRE+LE H+IYLR + Sbjct: 236 DGRVLGRHEGILRYTIGQRRGIGIASGEPLYVVHLDADRARVVVGPREALETHKIYLRNM 295 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGDG D G + F K+RS++ P P + +V+ E G+A GQACV Y Sbjct: 296 NWLGDGPLTDVPAGGLELFAKVRSTRPPRPAVLHHRAGATWVELVDGESGIAPGQACVLY 355 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + D NEARV GGG I S+R E L Sbjct: 356 SDDGNEARVFGGGFIERSERGAEAEAML 383 >gi|153008906|ref|YP_001370121.1| tRNA-specific 2-thiouridylase MnmA [Ochrobactrum anthropi ATCC 49188] gi|166235072|sp|A6WZ88|MNMA_OCHA4 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|151560794|gb|ABS14292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ochrobactrum anthropi ATCC 49188] Length = 398 Score = 488 bits (1257), Expect = e-136, Method: Compositional matrix adjust. Identities = 230/394 (58%), Positives = 290/394 (73%), Gaps = 5/394 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL P+D RVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+ A R GSCC Sbjct: 3 LNSLDLPGKPEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSCC 62 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+D Sbjct: 63 AGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFAD 122 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL R LGAD LATGHYIRSR R + RP+D +RDQSYFLFATTQ+Q+ L Sbjct: 123 LLQTARDLGADALATGHYIRSRA-----NGAHRALYRPVDTDRDQSYFLFATTQEQIDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K VR++A EMGL +A K DSQDICFV QGKY D++ ++ A GDIVH+ Sbjct: 178 RFPLGHLPKAQVREIAEEMGLTVAKKQDSQDICFVPQGKYSDIISKLKPEAANPGDIVHI 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G+ LGRH+GI++YT+GQRRG+GVA GEPL+VV+LD ++RVIVGPRE+LE H+++LR+I Sbjct: 238 DGRTLGRHDGIVHYTVGQRRGIGVATGEPLYVVHLDAANARVIVGPREALETHKVFLRDI 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD D G + F K+RS++ P P ++ D +V+ E G+A GQACV Y Sbjct: 298 NWLGDAPISDLPEGGMEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVLY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402 + +SN ARV GGG I S+R EE L ++ + Sbjct: 358 SDESNTARVFGGGFIGRSEREPQAEEMLRRLVAN 391 >gi|163758747|ref|ZP_02165834.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Hoeflea phototrophica DFL-43] gi|162284037|gb|EDQ34321.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Hoeflea phototrophica DFL-43] Length = 401 Score = 488 bits (1256), Expect = e-136, Method: Compositional matrix adjust. Identities = 230/392 (58%), Positives = 297/392 (75%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLD+DK+P+D RVVVAMSGGVDSSVVA LL R+GYDV+GVTLQLY+ A R G+CC Sbjct: 6 VNSLDIDKDPRDTRVVVAMSGGVDSSVVAGLLAREGYDVLGVTLQLYDHGAAVHRAGACC 65 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRVC+ + + HYV DYE+RF+ AVI PFA SY AGETP+PCV CN+TVKF+D Sbjct: 66 AGQDIDDARRVCEVLGIPHYVLDYEKRFQEAVINPFAESYVAGETPIPCVACNQTVKFAD 125 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R LGAD LATGHYIRSR D RR + RP+D ERDQSYFLFATTQ QL + Sbjct: 126 LLATARDLGADALATGHYIRSRANPSADNPGRRALYRPIDSERDQSYFLFATTQDQLDYV 185 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG++ K R+LA EMGL +A K+DSQDICFV GKY +V++++ AL G+IVH+ Sbjct: 186 RFPLGELPKIRTRELAEEMGLTVAQKADSQDICFVPHGKYANVIEKLRPNSALAGEIVHI 245 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG H GI+++TIGQRRG+GVA+G+PL+VV+LD S RVIVGPRE+L+ R+ LR++ Sbjct: 246 DGRVLGEHPGIVHFTIGQRRGIGVAVGDPLYVVHLDARSKRVIVGPREALDTRRLILRDM 305 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD +D +G CF K+RS++ P P ++ + + V+ + E GVA GQACV Y Sbjct: 306 NWLGDFALDDLGPEGLSCFAKVRSTRPPRPAVLRYENGEISVELVEGESGVAPGQACVLY 365 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 ++ +EARV GGG I S+RS A E L +++ Sbjct: 366 SAPGDEARVFGGGFIDRSERSAAAEAMLANLL 397 >gi|239832470|ref|ZP_04680799.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ochrobactrum intermedium LMG 3301] gi|239824737|gb|EEQ96305.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ochrobactrum intermedium LMG 3301] Length = 411 Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust. Identities = 230/394 (58%), Positives = 290/394 (73%), Gaps = 5/394 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL P+D RVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+ A R GSCC Sbjct: 16 LNSLDLPGKPEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSCC 75 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+D Sbjct: 76 AGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFAD 135 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL R LGAD LATGHYIRSR R + RP+D +RDQSYFLFATTQ+Q+ L Sbjct: 136 LLQTARDLGADALATGHYIRSRA-----NGAHRALYRPVDTDRDQSYFLFATTQEQIDYL 190 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K VR++A EMGL +A K DSQDICFV QGKY D++ ++ A GDIVH+ Sbjct: 191 RFPLGHLPKAQVREIAEEMGLTVAKKQDSQDICFVPQGKYSDIISKLKPEAANPGDIVHI 250 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G+ LGRH+GI++YT+GQRRG+GVA GEPL+VV+LD ++RVIVGPRE+LE H+++LR+I Sbjct: 251 DGRTLGRHDGIVHYTVGQRRGIGVATGEPLYVVHLDAANARVIVGPREALETHKVFLRDI 310 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD D G + F K+RS++ P P ++ D +V+ E G+A GQACV Y Sbjct: 311 NWLGDAPIGDLPEGGIEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVLY 370 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402 + +SN ARV GGG I S+R EE L ++ + Sbjct: 371 SDESNTARVFGGGFIGRSEREPQAEEMLRRLVAN 404 >gi|306844591|ref|ZP_07477178.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Brucella sp. BO1] gi|306275035|gb|EFM56798.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Brucella sp. BO1] Length = 398 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 230/394 (58%), Positives = 290/394 (73%), Gaps = 5/394 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL P+DMRVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+ A R GSCC Sbjct: 3 LNSLDLPGKPEDMRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSCC 62 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+D Sbjct: 63 AGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFAD 122 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL R LGAD LATGHYIRSR R + RP+D +RDQSYFLFATTQ+Q+ L Sbjct: 123 LLQTARDLGADALATGHYIRSRA-----NGAHRALYRPVDTDRDQSYFLFATTQEQIDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K VR++A E+GL +A K DSQDICFV QGKY D++ R+ A GDIVH+ Sbjct: 178 RFPLGHLPKAQVREIAEELGLTVAKKQDSQDICFVPQGKYSDIISRLKPEAANPGDIVHI 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G+ LGRH+GI++YT+GQRRG+GVA GE L+VV+LD ++RVIVGPRE+LE H+++LR++ Sbjct: 238 DGRTLGRHDGIVHYTVGQRRGIGVATGEALYVVHLDAANARVIVGPREALETHKVFLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD D G + F K+RS++ P P ++ D +V+ E G+A GQACV Y Sbjct: 298 NWLGDTPIADLPKSGMEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVLY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402 + DSN ARV GGG I S+R EE L ++ + Sbjct: 358 SDDSNAARVFGGGFIGRSEREPQAEEMLRRLMAN 391 >gi|110634566|ref|YP_674774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mesorhizobium sp. BNC1] gi|123353475|sp|Q11G66|MNMA_MESSB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|110285550|gb|ABG63609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chelativorans sp. BNC1] Length = 391 Score = 486 bits (1250), Expect = e-135, Method: Compositional matrix adjust. Identities = 233/390 (59%), Positives = 287/390 (73%), Gaps = 6/390 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLDL P+ RVVVAMSGGVDSSVVA LL R+GY+V+GVTLQLY+ A R GSCC Sbjct: 1 MNSLDLPGRPEATRVVVAMSGGVDSSVVAGLLAREGYEVVGVTLQLYDHGAAVHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV +T+ ++HYV DYEERFR AVI PFA SY GETP+PCV CN+TVKFSD Sbjct: 61 AGQDIDDARRVAETLGIAHYVLDYEERFRKAVIDPFAESYVTGETPIPCVACNQTVKFSD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL R+LGAD LATGHYIRSR R + RP+D +RDQSYFLFATTQ+Q+ L Sbjct: 121 LLETARELGADALATGHYIRSRA-----NGAHRALYRPVDADRDQSYFLFATTQEQIDYL 175 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG M K VR +A EMGL +A K DSQDICFV +GKY DV+ ++ G A GDIVH+ Sbjct: 176 RFPLGGMSKPQVRAIAEEMGLSVAAKHDSQDICFVPRGKYSDVITKLKPGAASPGDIVHI 235 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LGRH GI++YTIGQRRG+G+A GEPL+VV+LD +RV+VGPRE+LE R+ LR++ Sbjct: 236 DGRVLGRHEGILHYTIGQRRGIGIAAGEPLYVVHLDAEHARVVVGPREALETRRLILRQV 295 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD E+ +G F K+RS++ P P + D +V+ + E GVA GQACV Y Sbjct: 296 NWLGDFPLEELPANGMDLFAKVRSTRPPTPATLHNRDGSTWVELHEGETGVAPGQACVLY 355 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLS 398 + D N+ARV GGG I S+R A E+LLS Sbjct: 356 SDDRNDARVFGGGFIERSERC-ADAEALLS 384 >gi|163843840|ref|YP_001628244.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella suis ATCC 23445] gi|189036219|sp|B0CI68|MNMA_BRUSI RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|163674563|gb|ABY38674.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella suis ATCC 23445] Length = 398 Score = 485 bits (1248), Expect = e-135, Method: Compositional matrix adjust. Identities = 229/394 (58%), Positives = 289/394 (73%), Gaps = 5/394 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL P+D RVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+ A R GSCC Sbjct: 3 LNSLDLPGKPEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHSAAVHRAGSCC 62 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+D Sbjct: 63 AGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFAD 122 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL R LGAD LATGHYIRSR R + RP+D +RDQSYFLFATTQ+Q+ L Sbjct: 123 LLQTARDLGADALATGHYIRSRA-----NGAHRALYRPVDTDRDQSYFLFATTQEQIDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K VR++A E+GL +A K DSQDICFV QGKY D++ R+ A GDIVH+ Sbjct: 178 RFPLGHLPKAQVREIAEELGLTVAKKQDSQDICFVPQGKYSDIISRLKPEAANPGDIVHI 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G+ LGRH+GI++YT+GQRRG+GVA GE L+VV+LD ++RVIVGPRE+LE H+++LR++ Sbjct: 238 DGRTLGRHDGIVHYTVGQRRGIGVATGEALYVVHLDAANARVIVGPREALETHKVFLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD D G + F K+RS++ P P ++ D +V+ E G+A GQACV Y Sbjct: 298 NWLGDTPIADLPKSGMEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVLY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402 + DSN ARV GGG I S+R EE L ++ + Sbjct: 358 SDDSNAARVFGGGFIGRSEREPQAEEMLRRLMAN 391 >gi|254719618|ref|ZP_05181429.1| tRNA-specific 2-thiouridylase MnmA [Brucella sp. 83/13] gi|265984628|ref|ZP_06097363.1| tRNA-specific 2-thiouridylase mnmA [Brucella sp. 83/13] gi|306837544|ref|ZP_07470417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella sp. NF 2653] gi|264663220|gb|EEZ33481.1| tRNA-specific 2-thiouridylase mnmA [Brucella sp. 83/13] gi|306407370|gb|EFM63576.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella sp. NF 2653] Length = 398 Score = 484 bits (1247), Expect = e-135, Method: Compositional matrix adjust. Identities = 230/394 (58%), Positives = 289/394 (73%), Gaps = 5/394 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL P+D RVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+ A R GSCC Sbjct: 3 LNSLDLPGKPEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSCC 62 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+D Sbjct: 63 AGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFAD 122 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL R LGAD LATGHYIRSR R + RP+D +RDQSYFLFATTQ+Q+ L Sbjct: 123 LLQAARDLGADALATGHYIRSRA-----NGAHRALYRPVDTDRDQSYFLFATTQEQIDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K VR++A E+GL +A K DSQDICFV QGKY D++ R+ A GDIVH+ Sbjct: 178 RFPLGHLPKAQVREIAEELGLTVAKKQDSQDICFVPQGKYSDIISRLKPEAANPGDIVHI 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G+ LGRH+GI++YT+GQRRG+GVA GE L+VV+LD ++RVIVGPRE+LE H+++LR++ Sbjct: 238 DGRTLGRHDGIVHYTVGQRRGIGVATGEALYVVHLDAANARVIVGPREALETHKVFLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD D G + F KIRS++ P P ++ D +V+ E G+A GQACV Y Sbjct: 298 NWLGDTPIADLPKSGMEVFAKIRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVLY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402 + DSN ARV GGG I S+R EE L ++ + Sbjct: 358 SDDSNAARVFGGGFIGRSEREPQAEEMLRRLMAN 391 >gi|23502454|ref|NP_698581.1| tRNA-specific 2-thiouridylase MnmA [Brucella suis 1330] gi|62290471|ref|YP_222264.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 1 str. 9-941] gi|82700395|ref|YP_414969.1| tRNA-specific 2-thiouridylase MnmA [Brucella melitensis biovar Abortus 2308] gi|148559837|ref|YP_001259458.1| tRNA-specific 2-thiouridylase MnmA [Brucella ovis ATCC 25840] gi|189024699|ref|YP_001935467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella abortus S19] gi|225628026|ref|ZP_03786062.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella ceti str. Cudo] gi|225853065|ref|YP_002733298.1| tRNA-specific 2-thiouridylase MnmA [Brucella melitensis ATCC 23457] gi|237815980|ref|ZP_04594977.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella abortus str. 2308 A] gi|254689772|ref|ZP_05153026.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 6 str. 870] gi|254694261|ref|ZP_05156089.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 3 str. Tulya] gi|254697916|ref|ZP_05159744.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 2 str. 86/8/59] gi|254702309|ref|ZP_05164137.1| tRNA-specific 2-thiouridylase MnmA [Brucella suis bv. 5 str. 513] gi|254704837|ref|ZP_05166665.1| tRNA-specific 2-thiouridylase MnmA [Brucella suis bv. 3 str. 686] gi|254708251|ref|ZP_05170079.1| tRNA-specific 2-thiouridylase MnmA [Brucella pinnipedialis M163/99/10] gi|254710623|ref|ZP_05172434.1| tRNA-specific 2-thiouridylase MnmA [Brucella pinnipedialis B2/94] gi|254714807|ref|ZP_05176618.1| tRNA-specific 2-thiouridylase MnmA [Brucella ceti M644/93/1] gi|254717867|ref|ZP_05179678.1| tRNA-specific 2-thiouridylase MnmA [Brucella ceti M13/05/1] gi|254730806|ref|ZP_05189384.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 4 str. 292] gi|256032116|ref|ZP_05445730.1| tRNA-specific 2-thiouridylase MnmA [Brucella pinnipedialis M292/94/1] gi|256061638|ref|ZP_05451777.1| tRNA-specific 2-thiouridylase MnmA [Brucella neotomae 5K33] gi|256114160|ref|ZP_05454914.1| tRNA-specific 2-thiouridylase MnmA [Brucella melitensis bv. 3 str. Ether] gi|256160312|ref|ZP_05458006.1| tRNA-specific 2-thiouridylase MnmA [Brucella ceti M490/95/1] gi|256255517|ref|ZP_05461053.1| tRNA-specific 2-thiouridylase MnmA [Brucella ceti B1/94] gi|256258024|ref|ZP_05463560.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 9 str. C68] gi|256263452|ref|ZP_05465984.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 2 str. 63/9] gi|256370004|ref|YP_003107515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella microti CCM 4915] gi|260169251|ref|ZP_05756062.1| tRNA-specific 2-thiouridylase MnmA [Brucella sp. F5/99] gi|260547004|ref|ZP_05822743.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus NCTC 8038] gi|260755305|ref|ZP_05867653.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 6 str. 870] gi|260758526|ref|ZP_05870874.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 4 str. 292] gi|260762350|ref|ZP_05874693.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 2 str. 86/8/59] gi|260884320|ref|ZP_05895934.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 9 str. C68] gi|261214569|ref|ZP_05928850.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 3 str. Tulya] gi|261219714|ref|ZP_05933995.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M13/05/1] gi|261222726|ref|ZP_05937007.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti B1/94] gi|261315753|ref|ZP_05954950.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis M163/99/10] gi|261318196|ref|ZP_05957393.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis B2/94] gi|261322603|ref|ZP_05961800.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M644/93/1] gi|261325648|ref|ZP_05964845.1| tRNA-specific 2-thiouridylase mnmA [Brucella neotomae 5K33] gi|261752876|ref|ZP_05996585.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 5 str. 513] gi|261755533|ref|ZP_05999242.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 3 str. 686] gi|261758765|ref|ZP_06002474.1| tRNA-specific 2-thiouridylase mnmA [Brucella sp. F5/99] gi|265989227|ref|ZP_06101784.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis M292/94/1] gi|265995479|ref|ZP_06108036.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 3 str. Ether] gi|265998689|ref|ZP_06111246.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M490/95/1] gi|294852904|ref|ZP_06793577.1| tRNA methyl transferase [Brucella sp. NVSL 07-0026] gi|297248856|ref|ZP_06932574.1| tRNA methyl transferase [Brucella abortus bv. 5 str. B3196] gi|306843064|ref|ZP_07475687.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Brucella sp. BO2] gi|38258585|sp|Q8CY38|MNMA_BRUSU RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71658011|sp|Q57BT1|MNMA_BRUAB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|123547133|sp|Q2YQB2|MNMA_BRUA2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|166234846|sp|A5VRW1|MNMA_BRUO2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|229486334|sp|B2S746|MNMA_BRUA1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|254811446|sp|C0REM2|MNMA_BRUMB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|23348445|gb|AAN30496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella suis 1330] gi|62196603|gb|AAX74903.1| TrmU, tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella abortus bv. 1 str. 9-941] gi|82616496|emb|CAJ11563.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella melitensis biovar Abortus 2308] gi|148371094|gb|ABQ61073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella ovis ATCC 25840] gi|189020271|gb|ACD72993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella abortus S19] gi|225617189|gb|EEH14235.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella ceti str. Cudo] gi|225641430|gb|ACO01344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella melitensis ATCC 23457] gi|237789278|gb|EEP63489.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella abortus str. 2308 A] gi|256000167|gb|ACU48566.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella microti CCM 4915] gi|260096054|gb|EEW79931.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus NCTC 8038] gi|260668844|gb|EEX55784.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 4 str. 292] gi|260672782|gb|EEX59603.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 2 str. 86/8/59] gi|260675413|gb|EEX62234.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 6 str. 870] gi|260873848|gb|EEX80917.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 9 str. C68] gi|260916176|gb|EEX83037.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 3 str. Tulya] gi|260921310|gb|EEX87963.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti B1/94] gi|260924803|gb|EEX91371.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M13/05/1] gi|261295293|gb|EEX98789.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M644/93/1] gi|261297419|gb|EEY00916.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis B2/94] gi|261301628|gb|EEY05125.1| tRNA-specific 2-thiouridylase mnmA [Brucella neotomae 5K33] gi|261304779|gb|EEY08276.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis M163/99/10] gi|261738749|gb|EEY26745.1| tRNA-specific 2-thiouridylase mnmA [Brucella sp. F5/99] gi|261742629|gb|EEY30555.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 5 str. 513] gi|261745286|gb|EEY33212.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 3 str. 686] gi|262553313|gb|EEZ09147.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M490/95/1] gi|262766592|gb|EEZ12381.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 3 str. Ether] gi|263093459|gb|EEZ17509.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 2 str. 63/9] gi|264661424|gb|EEZ31685.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis M292/94/1] gi|294821493|gb|EFG38492.1| tRNA methyl transferase [Brucella sp. NVSL 07-0026] gi|297176025|gb|EFH35372.1| tRNA methyl transferase [Brucella abortus bv. 5 str. B3196] gi|306286743|gb|EFM58293.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Brucella sp. BO2] gi|326409608|gb|ADZ66673.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella melitensis M28] gi|326539311|gb|ADZ87526.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella melitensis M5-90] Length = 398 Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust. Identities = 229/394 (58%), Positives = 289/394 (73%), Gaps = 5/394 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL P+D RVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+ A R GSCC Sbjct: 3 LNSLDLPGKPEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSCC 62 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+D Sbjct: 63 AGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFAD 122 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL R LGAD LATGHYIRSR R + RP+D +RDQSYFLFATTQ+Q+ L Sbjct: 123 LLQTARDLGADALATGHYIRSRA-----NGAHRALYRPVDTDRDQSYFLFATTQEQIDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K VR++A E+GL +A K DSQDICFV QGKY D++ R+ A GDIVH+ Sbjct: 178 RFPLGHLPKAQVREIAEELGLTVAKKQDSQDICFVPQGKYSDIISRLKPEAANPGDIVHI 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G+ LGRH+GI++YT+GQRRG+GVA GE L+VV+LD ++RVIVGPRE+LE H+++LR++ Sbjct: 238 DGRTLGRHDGIVHYTVGQRRGIGVATGEALYVVHLDAANARVIVGPREALETHKVFLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD D G + F K+RS++ P P ++ D +V+ E G+A GQACV Y Sbjct: 298 NWLGDTPIADLPKSGMEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVLY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402 + DSN ARV GGG I S+R EE L ++ + Sbjct: 358 SDDSNAARVFGGGFIGRSEREPQAEEMLRRLMAN 391 >gi|260462497|ref|ZP_05810704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mesorhizobium opportunistum WSM2075] gi|259031693|gb|EEW32962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mesorhizobium opportunistum WSM2075] Length = 396 Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust. Identities = 232/390 (59%), Positives = 288/390 (73%), Gaps = 6/390 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLDL P++ R+VVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+ A+ R GSCC Sbjct: 1 MNSLDLPGRPENTRIVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV +T+ + HYV DYEERFR AVI PFA SY AGETP+PCV CN+TVKF+D Sbjct: 61 AGQDIDDARRVSETLGIPHYVLDYEERFRKAVIDPFAESYVAGETPIPCVSCNQTVKFAD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRS G +G R + RP+D +RDQSYFLFATTQ Q+ L Sbjct: 121 LLATAKELGADALATGHYIRS----GANGAHRALY-RPVDADRDQSYFLFATTQAQIDYL 175 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K VR +A EMGL +A K DSQDICFV QGKY D++ ++ A GDIVH+ Sbjct: 176 RFPLGGLSKPQVRAIAEEMGLTVAAKQDSQDICFVPQGKYSDIIAKLKPSAANPGDIVHI 235 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LGRH GI+ YTIGQRRG+G+A GEPL+VV+LD +RV+VGPRE+LE +IYLR + Sbjct: 236 DGRVLGRHEGILRYTIGQRRGIGIASGEPLYVVHLDAERARVVVGPREALETRKIYLRNM 295 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGDG D G + F K+RS++ P P ++ V+ E G+A GQACV Y Sbjct: 296 NWLGDGQLTDIPAGGIELFAKVRSTRPPRPAVLRHEAGVTSVELADGESGIAPGQACVLY 355 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLS 398 + D NEARV GGG I S+R A E++LS Sbjct: 356 SDDGNEARVFGGGFIERSERG-AEAEAMLS 384 >gi|24638328|sp|Q98HL0|MNMA_RHILO RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 396 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 231/388 (59%), Positives = 285/388 (73%), Gaps = 5/388 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLDL P++ R+VVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+ A+ R GSCC Sbjct: 1 MNSLDLPGRPENTRIVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV +T+ + HYV DYEERFR AVI PFA SY AGETP+PCV CN+TVKF+D Sbjct: 61 AGQDIDDARRVSETLGIPHYVLDYEERFRKAVIDPFAESYVAGETPIPCVSCNQTVKFAD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRS G +G R + RP+D +RDQSYFLFATTQ Q+ L Sbjct: 121 LLATAKELGADALATGHYIRS----GANGAHRALY-RPVDADRDQSYFLFATTQAQIDYL 175 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K VR +A EMGL +A K DSQDICFV QGKY D++ ++ A GDIVH+ Sbjct: 176 RFPLGGLSKPQVRAIAEEMGLTVAAKQDSQDICFVPQGKYSDIIAKLKPAAANPGDIVHI 235 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LGRH GI+ YTIGQRRG+G+A GEPL+VV+LD +RV+VGPRE+LE H+IYLR + Sbjct: 236 DGRVLGRHEGILRYTIGQRRGIGIASGEPLYVVHLDAERARVVVGPREALETHKIYLRNM 295 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGDG D G + F K+RS++ P P ++ V+ E G+A GQACV Y Sbjct: 296 NWLGDGPLGDIPEGGLELFAKVRSTRPPRPAVLRYVAGVTSVELADGESGIAPGQACVLY 355 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + D NEARV GGG I S+R E L Sbjct: 356 SDDGNEARVFGGGFIERSERGAEAEAML 383 >gi|161619531|ref|YP_001593418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella canis ATCC 23365] gi|260565920|ref|ZP_05836390.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 4 str. 40] gi|189036218|sp|A9M700|MNMA_BRUC2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|161336342|gb|ABX62647.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella canis ATCC 23365] gi|260155438|gb|EEW90518.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 4 str. 40] Length = 398 Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/394 (57%), Positives = 288/394 (73%), Gaps = 5/394 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL +D RVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+ A R GSCC Sbjct: 3 LNSLDLPGKSEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSCC 62 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+D Sbjct: 63 AGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFAD 122 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL R LGAD LATGHYIRSR R + RP+D +RDQSYFLFATTQ+Q+ L Sbjct: 123 LLQTARDLGADALATGHYIRSRA-----NGAHRALYRPVDTDRDQSYFLFATTQEQIDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K VR++A E+GL +A K DSQDICFV QGKY D++ R+ A GDIVH+ Sbjct: 178 RFPLGHLPKAQVREIAEELGLTVAKKQDSQDICFVPQGKYSDIISRLKPEAANPGDIVHI 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G+ LGRH+GI++YT+GQRRG+GVA GE L+VV+LD ++RVIVGPRE+LE H+++LR++ Sbjct: 238 DGRTLGRHDGIVHYTVGQRRGIGVATGEALYVVHLDAANARVIVGPREALETHKVFLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD D G + F K+RS++ P P ++ D +V+ E G+A GQACV Y Sbjct: 298 NWLGDTPIADLPKSGMEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVLY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402 + DSN ARV GGG I S+R EE L ++ + Sbjct: 358 SDDSNAARVFGGGFIGRSEREPQAEEMLRRLMAN 391 >gi|17986711|ref|NP_539345.1| tRNA-specific 2-thiouridylase MnmA [Brucella melitensis bv. 1 str. 16M] gi|256045209|ref|ZP_05448107.1| tRNA-specific 2-thiouridylase MnmA [Brucella melitensis bv. 1 str. Rev.1] gi|260565193|ref|ZP_05835677.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 1 str. 16M] gi|265991642|ref|ZP_06104199.1| tRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|24638318|sp|Q8YIL6|MNMA_BRUME RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|17982334|gb|AAL51609.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260151261|gb|EEW86355.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 1 str. 16M] gi|263002426|gb|EEZ15001.1| tRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] Length = 398 Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/394 (57%), Positives = 288/394 (73%), Gaps = 5/394 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL P+D RVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+ A R GSCC Sbjct: 3 LNSLDLPGKPEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSCC 62 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+D Sbjct: 63 AGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFAD 122 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL R LGAD LATGHYIRSR R + RP+D +RDQSYFLFATTQ+Q+ L Sbjct: 123 LLQTARDLGADALATGHYIRSRA-----NGAHRALYRPVDTDRDQSYFLFATTQEQIDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K VR++A E+GL +A K DSQDICFV QGKY D++ R+ A GDIVH+ Sbjct: 178 RFPLGHLPKAQVREIAEELGLTVAKKQDSQDICFVPQGKYSDIISRLKPEAANPGDIVHI 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G+ LGRH+GI++YT+GQRRG+GVA GE L+VV+LD ++RVIVGPRE+LE H+++LR++ Sbjct: 238 DGRTLGRHDGIVHYTVGQRRGIGVATGEALYVVHLDAANARVIVGPREALETHKVFLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD D G + F K+RS++ P P ++ D +V+ E G+A GQACV Y Sbjct: 298 NWLGDTPIADLPKSGMEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVLY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402 + DSN A V GGG I S+R EE L ++ + Sbjct: 358 SDDSNAACVFGGGFIGRSEREPQAEEMLRRLMAN 391 >gi|319898474|ref|YP_004158567.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella clarridgeiae 73] gi|319402438|emb|CBI75979.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella clarridgeiae 73] Length = 409 Score = 478 bits (1230), Expect = e-133, Method: Compositional matrix adjust. Identities = 228/392 (58%), Positives = 296/392 (75%), Gaps = 5/392 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL +P++ R+VVAMSGGVDSSVVA LLK++GYDV+G+TLQLY+ A+ R G+CC Sbjct: 3 LNSLDLPGHPENSRIVVAMSGGVDSSVVAGLLKKEGYDVVGITLQLYDHGAATHRVGACC 62 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV +T+ V HY+ DYEERFR AVI PFA SYA GETP+PCV CN+TVKF+D Sbjct: 63 AGQDIEDARRVAETLGVPHYILDYEERFREAVINPFAESYAHGETPVPCVSCNQTVKFAD 122 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ +LGAD LATGHYIRSR++ R + RP+D +RDQSYFLFATTQ+Q+ L Sbjct: 123 LLATAYELGADALATGHYIRSRVH-----GAHRALFRPLDADRDQSYFLFATTQEQIDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGD+ K+ VR++A EMGL +A+K DSQDICFV QG+Y DV+ ++ +A G IVH+ Sbjct: 178 RFPLGDLSKDRVREIATEMGLVVANKHDSQDICFVPQGRYSDVITKLRPEVANPGVIVHI 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +GQILG H+GI+NYT+GQRRG+GVA GE L+V+YLD ++RVIVGPRE LE R++LR++ Sbjct: 238 DGQILGEHSGIVNYTVGQRRGIGVATGEALYVIYLDVENARVIVGPREMLETRRLFLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD ++ +DG VK+RS++ P P + VD +SE G+A GQACV Y Sbjct: 298 NWLGDERLDNFPLDGIDVAVKVRSTRPPRPARLHYKQGLFSVDLLESESGIAPGQACVLY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 +S EAR+LGGG I+ S+ + E+ L V+ Sbjct: 358 NENSYEARILGGGFITRSEHAADTEKMLKQVL 389 >gi|121602707|ref|YP_989294.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella bacilliformis KC583] gi|166234845|sp|A1UTJ1|MNMA_BARBK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|120614884|gb|ABM45485.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella bacilliformis KC583] Length = 391 Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust. Identities = 234/392 (59%), Positives = 290/392 (73%), Gaps = 5/392 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL P++ RVVVAMSGGVDSSVVA LLKR+GYDV+G+TLQLY+ A+ R G+CC Sbjct: 3 LNSLDLPGPPENSRVVVAMSGGVDSSVVAGLLKREGYDVVGITLQLYDHGAATHRAGACC 62 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV +T+ + +YV DYE RFR AVI PFA SYA GETP+PCV CN+TVKF+D Sbjct: 63 AGQDIEDARRVAETLRIPYYVLDYESRFREAVIDPFAESYARGETPIPCVACNQTVKFAD 122 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL R+LGAD LATGHYIRS Y R + RP+D ERDQSYFLFATTQ+Q+ L Sbjct: 123 LLVTARELGADALATGHYIRSVSY-----GTHRALFRPLDSERDQSYFLFATTQEQIDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG++ K VR++A+EMGL +ADK DSQDICFV QGKY DV+ ++ + GDIVH+ Sbjct: 178 RFPLGNLPKARVREIAKEMGLTVADKHDSQDICFVPQGKYSDVIAKLRPEASNPGDIVHI 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 NGQILG+H+GIINYT+GQRRG+GVA GE L+V++LD ++RVIVGPRE LE H+++LR++ Sbjct: 238 NGQILGQHSGIINYTVGQRRGIGVATGEALYVIFLDVENARVIVGPREMLETHKLFLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD E+ D KIRS++ P P + + VD + E VA GQACVFY Sbjct: 298 NWLGDERLENFPSDCIDVAAKIRSTRPPRPARLYYKEGIFSVDLLEGESSVAPGQACVFY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 + ARVLGGG I+ S+RS EE L V+ Sbjct: 358 NESGDGARVLGGGFITHSERSTDAEERLQRVL 389 >gi|319406809|emb|CBI80442.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella sp. 1-1C] Length = 409 Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust. Identities = 229/392 (58%), Positives = 296/392 (75%), Gaps = 5/392 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL +PK+ RVVVAMSGGVDSSVVA LLK++GYDV+G+TLQLY+ A+ R G+CC Sbjct: 3 LNSLDLPGHPKNSRVVVAMSGGVDSSVVAGLLKKEGYDVVGITLQLYDHGAATHRVGACC 62 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV +T+ V HY+ DYEERFR AVI PFA SYA GETP+PCV CN+TVKFSD Sbjct: 63 AGQDIEDARRVAETLGVPHYILDYEERFREAVINPFAESYAHGETPIPCVSCNQTVKFSD 122 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ +LGAD LATGHYIRSR++ R + R +D +RDQSYFLFATTQ+Q+ L Sbjct: 123 LLTTAYELGADALATGHYIRSRVH-----GAHRALFRSLDADRDQSYFLFATTQEQIDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGD+ KE VR++A EMGL +A+K DSQDICFV QGKY D++ ++ A G IVH+ Sbjct: 178 RFPLGDLSKERVREIATEMGLVVANKHDSQDICFVPQGKYSDIITKLRPEAANPGVIVHI 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +GQILG H+GI+NYTIGQRRG+GV+ GE L+V+YLD ++ VIVGPRE LE +++LR++ Sbjct: 238 DGQILGEHSGIVNYTIGQRRGIGVSTGEALYVIYLDVENACVIVGPREMLETRKLFLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD ++ +DG + VK+RS++ P + +VD +SE GVA GQACV Y Sbjct: 298 NWLGDEQLDNFPLDGIEVAVKVRSTRPPRSARLHYKQGSFFVDLLESESGVAPGQACVLY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 +S+EAR+LGGG I+ ++R+ E+ L V+ Sbjct: 358 NDNSHEARILGGGFITCAERAADTEKMLKRVL 389 >gi|319403803|emb|CBI77387.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella rochalimae ATCC BAA-1498] Length = 409 Score = 475 bits (1223), Expect = e-132, Method: Compositional matrix adjust. Identities = 228/392 (58%), Positives = 295/392 (75%), Gaps = 5/392 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL +PK+ R+VVAMSGGVDSSVVA LLK++GYDV+G+TLQLY+ A+ R G+CC Sbjct: 3 LNSLDLPGHPKNSRIVVAMSGGVDSSVVAGLLKKEGYDVVGITLQLYDHGAATHRVGACC 62 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV +T+ V HY+ DYEERFR AVI PFA SYA GETP+PCV CN+TVKFSD Sbjct: 63 AGQDIEDARRVAETLGVPHYILDYEERFREAVINPFAESYAHGETPIPCVSCNQTVKFSD 122 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ +LGAD LATGHYIRSR + R + R +D +RDQSYFLFATTQ+Q+ L Sbjct: 123 LLTTAYELGADALATGHYIRSRAH-----GAHRALFRSLDADRDQSYFLFATTQEQIDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGD+ KE VR++A EMGL +A+K DSQDICFV QGKY D++ ++ A G IVH+ Sbjct: 178 RFPLGDLSKERVREIATEMGLVVANKHDSQDICFVPQGKYSDIITKLRPEAANPGVIVHI 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +GQILG H+GI+NYTIGQRRG+GV+ GE L+V+YLD ++ VIVGPRE LE +++LR++ Sbjct: 238 DGQILGEHSGIVNYTIGQRRGIGVSTGEALYVIYLDVENACVIVGPREMLETRKLFLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD ++ +DG + VK+RS++ P + +VD +SE GVA GQACV Y Sbjct: 298 NWLGDEQLDNFPLDGIEVAVKVRSTRPPRSARLHYKQGSFFVDLLESESGVAPGQACVLY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 +S+EAR+LGGG I+ ++R+ E+ L V+ Sbjct: 358 NDNSHEARILGGGFITCAERAADTEKMLKKVL 389 >gi|159185866|ref|NP_356917.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Agrobacterium tumefaciens str. C58] gi|25298384|pir||AC3012 hypothetical protein trmU [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gi|159141000|gb|AAK89702.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Agrobacterium tumefaciens str. C58] Length = 380 Score = 474 bits (1221), Expect = e-132, Method: Compositional matrix adjust. Identities = 222/374 (59%), Positives = 279/374 (74%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSVVA +LKR+GYDV+G+TLQLY+ A R GSCCAGQD+ DARRVC+T+ + Sbjct: 1 MSGGVDSSVVAGILKREGYDVLGITLQLYDHGAAVHRAGSCCAGQDIDDARRVCETLGIP 60 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 HYV DYE RFR VI PFA +YA GETP+PCV CN+TVKF+DLL+ ++LGAD LATGHY Sbjct: 61 HYVLDYEARFRETVINPFAEAYAMGETPIPCVACNQTVKFADLLATAQELGADALATGHY 120 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 IRSR RR + RP+D +RDQS+FLFATTQ+Q+ LRFPLG + K R LA E Sbjct: 121 IRSRPNPVSGQPGRRALYRPIDSDRDQSWFLFATTQEQIDYLRFPLGGLSKAETRALAEE 180 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 MGL +A K+DSQDICFV QGKY D++ ++ AL GDIVHL+G++LGRH+GI++YTIGQ Sbjct: 181 MGLVVAKKADSQDICFVPQGKYTDIINKLKPNAALAGDIVHLDGRVLGRHDGIVHYTIGQ 240 Query: 267 RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKC 326 RRG+GVA GEPL+VV+LD RVIVGPRE+LE R+YLR++NWLGDG GF C Sbjct: 241 RRGIGVATGEPLYVVHLDARGRRVIVGPREALETRRVYLRDMNWLGDGALAADAGQGFTC 300 Query: 327 FVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 F K+RS++ P + +++G+YVD E GVA GQACV Y++ +ARV GGG I S Sbjct: 301 FAKVRSTRPPTEAVLHADENGIYVDLMTGEAGVAPGQACVLYSAPGPDARVYGGGFIDRS 360 Query: 387 KRSDAVEESLLSVI 400 +RS E SL +++ Sbjct: 361 ERSVDAEASLKALL 374 >gi|254470572|ref|ZP_05083976.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudovibrio sp. JE062] gi|211960883|gb|EEA96079.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudovibrio sp. JE062] Length = 400 Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust. Identities = 224/396 (56%), Positives = 293/396 (73%), Gaps = 5/396 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSL L P+D RVVVAMSGGVDSSVVA L+KR+GYDV+GVTLQLY+ +A +RKG+CC Sbjct: 2 LNSLGLPGRPEDTRVVVAMSGGVDSSVVAGLMKREGYDVVGVTLQLYDHGEAIQRKGACC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DARRV + + + HYV DYE RF+ VI FA SY GETP+PCV CN+TVKF D Sbjct: 62 AGQDIHDARRVAEKLGIPHYVLDYESRFKEQVIERFADSYINGETPIPCVTCNQTVKFKD 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL + LGADVL TGHY+R+ G +G + M RP+DL+RDQSYFLFATTQ+QL L Sbjct: 122 LLETAKDLGADVLVTGHYVRT----GMEGNQL-AMFRPVDLDRDQSYFLFATTQEQLDFL 176 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG M K VR+LARE L IADK DSQDICFV QG+Y DV+ ++ A GDIVH+ Sbjct: 177 RFPLGGMTKPEVRELAREFDLAIADKHDSQDICFVPQGRYTDVIAKLRPHAAEPGDIVHV 236 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG+HNGII+YTIGQRRG+GVA G+PL+VV+LD + RVIVGP+E+L H + LRE+ Sbjct: 237 DGRVLGKHNGIIHYTIGQRRGIGVATGDPLYVVHLDADGRRVIVGPKEALATHNLLLREV 296 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+G G +D +G + K+RS++ P +++N + + V+ E+GVA GQACVF+ Sbjct: 297 NWIGPGALDDLPEEGITVYAKVRSTRPPTEAVLRKNGENIQVELVAGEMGVAPGQACVFF 356 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEF 404 + EARVLGGG I +++ + E +L +++G + Sbjct: 357 DKEGQEARVLGGGWIQRAEKQEGAEAALKALLGKSW 392 >gi|319405239|emb|CBI78844.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella sp. AR 15-3] Length = 409 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 230/393 (58%), Positives = 293/393 (74%), Gaps = 5/393 (1%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 RLNSLDL P++ R+VVAMSGGVDSSVVA LLK++GYDV+G+TLQLY+ A+ R G+C Sbjct: 2 RLNSLDLPGYPENSRIVVAMSGGVDSSVVAGLLKKEGYDVVGITLQLYDHGAATHRVGAC 61 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 CAGQD+ DARRV +T+ V HY+ DYEERFR AVI PFA SYA GETP+PCV CN+TVKF+ Sbjct: 62 CAGQDIEDARRVAETLGVPHYILDYEERFREAVINPFAESYAHGETPIPCVACNQTVKFA 121 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL+ +LGAD LATGHYIRSRL+ R + R +D +RDQSYFLFATTQ+Q+ Sbjct: 122 DLLTTAYELGADALATGHYIRSRLH-----GAHRALFRSLDADRDQSYFLFATTQEQIDY 176 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 LRFPLGD+ KE VR++A EMGL +A+K DSQDICFV QGKY DV+ ++ A G IVH Sbjct: 177 LRFPLGDLSKEHVREIAAEMGLVVANKHDSQDICFVPQGKYSDVITKLRPEAANPGVIVH 236 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 ++GQILG H+GI+NYT+GQRRG+GVA GE L+V+YLD ++ VIVGPRE LE +++LR+ Sbjct: 237 IDGQILGEHSGIVNYTVGQRRGIGVATGEALYVIYLDVENACVIVGPREMLETRKLFLRD 296 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 +NWLGD ++ +DG VK+RS+ P + +VD +SE GVA GQACV Sbjct: 297 VNWLGDEQLDNFPLDGIDVAVKVRSTCPPRSARLHYKQGLFFVDLLESESGVAPGQACVL 356 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 Y S+EARVLGGG I+ ++R+ E+ L V+ Sbjct: 357 YNDSSHEARVLGGGFITCAERAADTEKMLKRVL 389 >gi|49474501|ref|YP_032543.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella quintana str. Toulouse] gi|81646912|sp|Q6FZ46|MNMA_BARQU RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|49240005|emb|CAF26420.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella quintana str. Toulouse] Length = 408 Score = 471 bits (1211), Expect = e-130, Method: Compositional matrix adjust. Identities = 231/393 (58%), Positives = 295/393 (75%), Gaps = 7/393 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL P + R+VVAMSGGVDSSVVA LLK++GYDVIG+TLQLY+ A+ R G+CC Sbjct: 3 LNSLDLPGQPDNSRIVVAMSGGVDSSVVAGLLKKEGYDVIGITLQLYDHGAATHRVGACC 62 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV +T+ + HYV DYE+RFR AVI PFA SYA GETP+PCV CN+TVKF+D Sbjct: 63 AGQDIEDARRVAETLGIPHYVLDYEKRFREAVIDPFAESYAHGETPVPCVACNQTVKFAD 122 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R+LGAD LATGHYIRSR + R + RP D+ERDQSYFLFATTQ+Q+ L Sbjct: 123 LLATARELGADALATGHYIRSRPH-----GAHRALFRPFDVERDQSYFLFATTQEQIDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGD+ K VR++A EMG +ADK DSQDICFV QGKY DV+ ++ G IVH+ Sbjct: 178 RFPLGDLPKAHVREIATEMGFVVADKHDSQDICFVPQGKYSDVITKLRPEAVNPGVIVHI 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +GQ+LG+H+GI+NYT+GQRRG+GVA GE L+VVYLD ++RVIVGPRE LE H+++LR++ Sbjct: 238 DGQVLGKHSGIVNYTVGQRRGIGVATGEALYVVYLDVENARVIVGPREMLETHKLFLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVF 367 NWLGD ++ DG + VK+RS++ P + +GV+ VDF + E VA GQACVF Sbjct: 298 NWLGDERLDNFPSDGLEMAVKVRSTR-PSHLARLHYQEGVFSVDFLECENSVAPGQACVF 356 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 Y + + AR+LGGG ++ S+R+ VE L V+ Sbjct: 357 YDGNGDGARILGGGFVTHSQRAVGVEMMLRRVL 389 >gi|163868748|ref|YP_001609965.1| tRNA-specific 2-thiouridylase MnmA [Bartonella tribocorum CIP 105476] gi|205812594|sp|A9IWH0|MNMA_BART1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|161018412|emb|CAK01970.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella tribocorum CIP 105476] Length = 407 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 225/392 (57%), Positives = 293/392 (74%), Gaps = 5/392 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL P+D R+VVAMSGGVDSSVVA LLKR+GY+VIG+TLQLY+ A+ R G+CC Sbjct: 3 LNSLDLPGQPEDSRIVVAMSGGVDSSVVAGLLKREGYNVIGITLQLYDHGAATHRVGACC 62 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV + + + HYV DYE+RFR AVI PFA SYA GETP+PC+ CN+TVKF+D Sbjct: 63 AGQDIEDARRVAEMLGIPHYVLDYEKRFREAVIDPFAESYAHGETPVPCIACNQTVKFAD 122 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R+LGAD LATGHYIRSR + R + RP+D +RDQSYFLFATTQ+Q+ L Sbjct: 123 LLATARELGADALATGHYIRSRSH-----GAHRALFRPLDNDRDQSYFLFATTQEQIDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGD+ K VR++A EMGL +A+K DSQDICFV QGKY DV+ ++ A G IVH+ Sbjct: 178 RFPLGDLPKARVREIAAEMGLVVANKHDSQDICFVPQGKYSDVIAKLRPEAANPGFIVHI 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G+ILG+H+GI+NYT+GQRRG+GV+ GE L+VVYLD ++RVIVGPRE LE H+++LR++ Sbjct: 238 DGKILGKHSGIVNYTVGQRRGIGVSTGEALYVVYLDVENARVIVGPREMLETHKLFLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD ++ G + VK+RS++ P + + VD + E GVA GQACV Y Sbjct: 298 NWLGDESLDNFPSQGIEVAVKVRSTRPPHLACLHYKEGVFSVDLLECENGVAPGQACVLY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 + +EAR+LGGG ++ S+R+ +E L V+ Sbjct: 358 DGNGHEARILGGGFVTHSERAADIEVMLKRVL 389 >gi|240850925|ref|YP_002972325.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella grahamii as4aup] gi|240268048|gb|ACS51636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella grahamii as4aup] Length = 409 Score = 465 bits (1197), Expect = e-129, Method: Compositional matrix adjust. Identities = 224/392 (57%), Positives = 291/392 (74%), Gaps = 5/392 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL P+D R+VVAMSGGVDSSVVA LLK++GY+VIG+TLQLY+ A+ R G+CC Sbjct: 3 LNSLDLPGQPEDSRIVVAMSGGVDSSVVAGLLKKEGYNVIGITLQLYDHGAATHRVGACC 62 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV +T+ + HYV DYE+RFR AVI PFA SYA GETP+PC+ CN+TVKF+D Sbjct: 63 AGQDIEDARRVAETLGIPHYVLDYEKRFREAVIDPFAESYAHGETPVPCIACNQTVKFAD 122 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R+LGAD LATGHYIRSR + R + RP+D +RDQSYFLFATTQ+Q+ L Sbjct: 123 LLATARELGADALATGHYIRSRSH-----GAHRALFRPLDNDRDQSYFLFATTQEQIDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGD+ K VR++A EMG +A+K DSQDICFV QGKY DV+ ++ A G IVH+ Sbjct: 178 RFPLGDLPKARVREMAAEMGFVVANKHDSQDICFVPQGKYSDVIAKLRPEAANPGVIVHI 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G+ILG+H+GI+NYT+GQRRG+GV+ GE L+VVYLD ++RVIVGPRE LE H+++LR++ Sbjct: 238 DGKILGKHSGIVNYTVGQRRGIGVSTGEALYVVYLDVENARVIVGPREMLETHKLFLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD + G + VK+RS++ P + + VD + E GVA GQACV Y Sbjct: 298 NWLGDESLDKFPSQGIEVAVKVRSTRPPHLARLHYKEGIFSVDLLECENGVAPGQACVLY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 + +EAR+LGGG ++ S+R+ E L V+ Sbjct: 358 DGNGHEARILGGGFVTHSERAADTEMMLKRVL 389 >gi|49475921|ref|YP_033962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella henselae str. Houston-1] gi|81647713|sp|Q6G2J9|MNMA_BARHE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|49238729|emb|CAF27985.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella henselae str. Houston-1] Length = 409 Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust. Identities = 224/392 (57%), Positives = 292/392 (74%), Gaps = 5/392 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL P++ R+VVAMSGGVDSSVVA LLK++GYDVIG+TLQLY+ A+ R G+CC Sbjct: 3 LNSLDLPGQPENSRIVVAMSGGVDSSVVAGLLKKEGYDVIGITLQLYDHGAATHRVGACC 62 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DAR V +T+ + HYV DYEERFR AVI PFA+SYA GETP+PC+ CN+TVKF+D Sbjct: 63 AGQDIEDARCVAETLGIPHYVLDYEERFREAVIDPFAASYAHGETPVPCIACNQTVKFAD 122 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R+L AD LATGHYIRSR + R + RP+D +RDQSYFLFATTQ+Q+ L Sbjct: 123 LLATARELDADALATGHYIRSRSH-----GAHRALFRPLDSDRDQSYFLFATTQEQIDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGD+ K VR++A EMG +A+K DSQDICFV QGKY D++ ++ G IVH+ Sbjct: 178 RFPLGDLPKARVREMATEMGFVVANKHDSQDICFVPQGKYSDIITKLRPEAVNPGVIVHV 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +GQ+LG+H+GI++YT+GQRRG+GVA GE L+VVYLD ++RVIVGPRE LE H+++LR++ Sbjct: 238 DGQVLGKHSGIVHYTVGQRRGIGVATGEALYVVYLDVENARVIVGPREMLETHKLFLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD ++ DG + VK+RS++ P + + VDF + E VA GQACVFY Sbjct: 298 NWLGDERLDNFPPDGIEMAVKVRSTRPPHLARLHYQEGVFSVDFLECENSVAPGQACVFY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 +S+ ARVLGGG ++ S+R+ E L V+ Sbjct: 358 DGNSDGARVLGGGFVTHSERAAETEMMLKRVL 389 >gi|13472503|ref|NP_104070.1| tRNA-specific 2-thiouridylase MnmA [Mesorhizobium loti MAFF303099] gi|14023249|dbj|BAB49856.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Mesorhizobium loti MAFF303099] Length = 378 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 221/370 (59%), Positives = 271/370 (73%), Gaps = 5/370 (1%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSVVA LLKR+GYDV+GVTLQLY+ A+ R GSCCAGQD+ DARRV +T+ + Sbjct: 1 MSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRAGSCCAGQDIDDARRVSETLGIP 60 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 HYV DYEERFR AVI PFA SY AGETP+PCV CN+TVKF+DLL+ ++LGAD LATGHY Sbjct: 61 HYVLDYEERFRKAVIDPFAESYVAGETPIPCVSCNQTVKFADLLATAKELGADALATGHY 120 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 IRS G +G R + RP+D +RDQSYFLFATTQ Q+ LRFPLG + K VR +A E Sbjct: 121 IRS----GANGAHRALY-RPVDADRDQSYFLFATTQAQIDYLRFPLGGLSKPQVRAIAEE 175 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 MGL +A K DSQDICFV QGKY D++ ++ A GDIVH++G++LGRH GI+ YTIGQ Sbjct: 176 MGLTVAAKQDSQDICFVPQGKYSDIIAKLKPAAANPGDIVHIDGRVLGRHEGILRYTIGQ 235 Query: 267 RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKC 326 RRG+G+A GEPL+VV+LD +RV+VGPRE+LE H+IYLR +NWLGDG D G + Sbjct: 236 RRGIGIASGEPLYVVHLDAERARVVVGPREALETHKIYLRNMNWLGDGPLGDIPEGGLEL 295 Query: 327 FVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 F K+RS++ P P ++ V+ E G+A GQACV Y+ D NEARV GGG I S Sbjct: 296 FAKVRSTRPPRPAVLRYVAGVTSVELADGESGIAPGQACVLYSDDGNEARVFGGGFIERS 355 Query: 387 KRSDAVEESL 396 +R E L Sbjct: 356 ERGAEAEAML 365 >gi|328542757|ref|YP_004302866.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Polymorphum gilvum SL003B-26A1] gi|326412503|gb|ADZ69566.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Polymorphum gilvum SL003B-26A1] Length = 393 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 226/377 (59%), Positives = 278/377 (73%), Gaps = 8/377 (2%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL + P+D RVVVAMSGGVDSSVVA L+K++GYDV+GVTLQLY+ A +R G+CC Sbjct: 2 LNSLDLPRRPQDTRVVVAMSGGVDSSVVAGLMKQEGYDVVGVTLQLYDHGAAVQRAGACC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DARRV + + + HYV DYE RF+ AVI FA SY AGETP+PCV CN+TVKFSD Sbjct: 62 AGQDIHDARRVAERLGIPHYVLDYERRFKEAVIDRFAESYMAGETPIPCVACNQTVKFSD 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL R LGADVLATGHY+RS RR + RP DL+RDQSYFLFATTQ+QL L Sbjct: 122 LLETARTLGADVLATGHYVRS-----APAGNRRALYRPADLDRDQSYFLFATTQEQLDFL 176 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG K VR LAR GL +ADK DSQDICFV +G+Y DV+ R+ A GDIVH+ Sbjct: 177 RFPLGGRPKAEVRALARRFGLAVADKQDSQDICFVPKGRYADVIARLRPDAAEPGDIVHV 236 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LGRH+GII+YT+GQRRGLG+A GEPL+VV LD + RV+VGPR++L R+ LR++ Sbjct: 237 DGRVLGRHDGIIHYTVGQRRGLGIAAGEPLYVVRLDAAARRVVVGPRDALATRRLSLRDL 296 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVF 367 NWLG + F K+RS++ PVP + R+ DG + V+ E GVA GQACVF Sbjct: 297 NWLGAEPLDPGAP--VALFAKVRSTRPPVPAVLTRHADGAIEVELADGETGVAPGQACVF 354 Query: 368 YTSDSNEARVLGGGIIS 384 Y +D EARVLGGG I+ Sbjct: 355 YDADGAEARVLGGGWIA 371 >gi|148253403|ref|YP_001237988.1| tRNA-specific 2-thiouridylase MnmA [Bradyrhizobium sp. BTAi1] gi|205811320|sp|A5ED38|MNMA_BRASB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|146405576|gb|ABQ34082.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bradyrhizobium sp. BTAi1] Length = 397 Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust. Identities = 221/378 (58%), Positives = 282/378 (74%), Gaps = 4/378 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL+ P+D RVVVAMSGGVDSSV AALLK +GYDV+G+TLQLY+ A+ RKG+CC Sbjct: 2 LNSLDLEGRPEDTRVVVAMSGGVDSSVTAALLKSEGYDVVGITLQLYDHGAATHRKGACC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V + + + HYV DYE+RFR +VI FA+SYA+GETP+PC++CNR +KF D Sbjct: 62 AGQDIHDARNVAERLGIPHYVLDYEDRFRESVIDNFAASYASGETPVPCIECNRAIKFGD 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL R+LGA VLATGHY+ SR DG R ++C D +RDQSYFLFATT++QL L Sbjct: 122 LLKTARELGASVLATGHYVASRRLA--DGSRA-LVC-AADADRDQSYFLFATTREQLDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K VR+LAR GL++ADK DSQDICFV G+Y D++ ++ G+IV L Sbjct: 178 RFPLGDMTKPEVRELARRFGLEVADKHDSQDICFVPTGRYTDIIGKLRPNAMEPGEIVDL 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 NG++LG H GI NYTIGQR+GLG+A G PL+VV LD + RV+VGPRE+L HRI LRE+ Sbjct: 238 NGRVLGAHQGIANYTIGQRKGLGIAAGAPLYVVKLDVATRRVVVGPREALRTHRITLREV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GDG+ + AV DG + FV++RS++ P P +++ D V+ E GV+ GQACVFY Sbjct: 298 NWIGDGVLDAAVRDGLELFVRVRSTRPPQPAWLRGADGQYEVELVAGEEGVSPGQACVFY 357 Query: 369 TSDSNEARVLGGGIISGS 386 + S ARVLGGG I + Sbjct: 358 DAASGRARVLGGGFIQSA 375 >gi|146342725|ref|YP_001207773.1| tRNA-specific 2-thiouridylase MnmA [Bradyrhizobium sp. ORS278] gi|205811327|sp|A4Z082|MNMA_BRASO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|146195531|emb|CAL79558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bradyrhizobium sp. ORS278] Length = 397 Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust. Identities = 220/378 (58%), Positives = 278/378 (73%), Gaps = 4/378 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL+ P+D RVVVAMSGGVDSSV AALLK GYDV+G+TLQLY+ A+ RKG+CC Sbjct: 2 LNSLDLEGRPEDTRVVVAMSGGVDSSVTAALLKSQGYDVVGITLQLYDHGAATHRKGACC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V + + + HYV DYE+RFR +VI FA+SYA+GETP+PC++CNR +KF D Sbjct: 62 AGQDIHDARNVAERLGIPHYVLDYEDRFRESVIDNFAASYASGETPVPCIECNRAIKFGD 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL R+LGA VLATGHY+ SR DG R + C D +RDQSYFLFATT++QL L Sbjct: 122 LLKTARELGASVLATGHYVASRRL--PDGSRA-LTC-AADADRDQSYFLFATTREQLDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K VR+LAR L++ADK DSQDICFV G+Y D++ ++ G+IV L Sbjct: 178 RFPLGDMTKPEVRELARRFELEVADKHDSQDICFVPTGRYTDIIGKLRPNAMEPGEIVDL 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 NG++LG H GI NYTIGQR+GLG+A G PL+VV LD + RV+VGPRE+L HRI LRE+ Sbjct: 238 NGRVLGAHQGIANYTIGQRKGLGIAAGAPLYVVKLDVTTRRVVVGPREALRTHRITLREV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GDG + AV DG + FV++RS++ P P +++ D V+ E GV+ GQACVFY Sbjct: 298 NWIGDGALDAAVRDGLELFVRVRSTRAPQPAWLRGADGSYEVELVGGEEGVSPGQACVFY 357 Query: 369 TSDSNEARVLGGGIISGS 386 + S ARVLGGG I + Sbjct: 358 DAASGRARVLGGGFIQSA 375 >gi|85713551|ref|ZP_01044541.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrobacter sp. Nb-311A] gi|85699455|gb|EAQ37322.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrobacter sp. Nb-311A] Length = 433 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 215/376 (57%), Positives = 277/376 (73%), Gaps = 4/376 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL+ P+D RVVVAMSGGVDSSV AALLK +GYDV+G+TLQLY+ A+ RKG+CC Sbjct: 35 LNSLDLEGRPQDTRVVVAMSGGVDSSVTAALLKSEGYDVVGITLQLYDHGAATHRKGACC 94 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V + + V HYV DYE RFR VI FA SYA+GETP+PC++CNR VKF D Sbjct: 95 AGQDIHDARNVAERLGVPHYVLDYESRFRETVIENFADSYASGETPVPCIECNRLVKFRD 154 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R+LGA LATGHY+ SR G R ++C D +RDQSYFLFATT++QL L Sbjct: 155 LLATARELGAAALATGHYVASRR---SPGGSRTLLC-AADADRDQSYFLFATTREQLDFL 210 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K R+LAR GL +ADK DSQDICFV G Y D++ ++ L GDIV L Sbjct: 211 RFPLGDMTKAQTRELARRFGLPVADKHDSQDICFVPTGHYTDIISQLKPNAMLSGDIVDL 270 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G+++G H GI+N+T+GQRRGLG+A G PL+V+ LD + RV+VGPRE+L++HRI LR++ Sbjct: 271 DGRVIGHHEGIVNFTVGQRRGLGIASGAPLYVLSLDAANRRVVVGPREALKMHRIVLRDV 330 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GDG + A+ G + FV++RS++ P P +++ D G V+ E GV+ GQACVFY Sbjct: 331 NWIGDGALDLAIGAGLELFVRVRSTRKPQPAWLRVVDGGYEVELVAGEEGVSPGQACVFY 390 Query: 369 TSDSNEARVLGGGIIS 384 +ARVLGGG I+ Sbjct: 391 DGPEGQARVLGGGFIA 406 >gi|218663598|ref|ZP_03519528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhizobium etli IE4771] Length = 345 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 210/345 (60%), Positives = 262/345 (75%), Gaps = 1/345 (0%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +N+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+ A R GSCC Sbjct: 1 MNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRVC+T+ + HYV DYE+RFR VI PFA SY AGETP+PCV CN+TVKF+D Sbjct: 61 AGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFAD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRSR + RR + RP D +RDQSYFLFATTQ+Q+ L Sbjct: 121 LLATAKELGADALATGHYIRSRPNPSPEHPGRRALFRPADADRDQSYFLFATTQEQIDYL 180 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K R LA EMGL +A K+DSQDICFV QGKY D++ ++ AL G+IVHL Sbjct: 181 RFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEIVHL 240 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG H GI+++TIGQRRG+G+A GEPL+VVYLD S RVIVGP+E+LE HR+YLR++ Sbjct: 241 DGRVLGSHEGILHFTIGQRRGIGIATGEPLYVVYLDARSRRVIVGPKEALETHRVYLRDV 300 Query: 309 NWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF 352 NWLGD DA GF C+ K+RS++ P P + + YVD Sbjct: 301 NWLGDETLADAASGGGFACYAKVRSTRAPAPAVLHVDATCTYVDL 345 >gi|304394517|ref|ZP_07376438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ahrensia sp. R2A130] gi|303293427|gb|EFL87806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ahrensia sp. R2A130] Length = 406 Score = 451 bits (1160), Expect = e-125, Method: Compositional matrix adjust. Identities = 215/378 (56%), Positives = 280/378 (74%), Gaps = 4/378 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSL DK P D RVVVAMSGGVDSSVVA LLK GY+V+G+TLQLY+ A ++KG+CC Sbjct: 3 LNSLGFDKAPADTRVVVAMSGGVDSSVVACLLKEQGYEVLGMTLQLYDHGAAVQKKGACC 62 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DARRV + + HYV DYE++FR VI PFA +Y GETP+PCV CN+TVKFSD Sbjct: 63 AGQDIHDARRVSEQMGFPHYVLDYEQKFREQVIDPFAKAYINGETPIPCVACNQTVKFSD 122 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGK-RRRIMCRPMDLERDQSYFLFATTQQQLCD 187 LL+ R+LGAD LATGHYI S+ GDDG + R + RP D ++DQSYFLFATTQ+QL Sbjct: 123 LLTTARELGADCLATGHYIISK--PGDDGPLKNRQLFRPADADKDQSYFLFATTQEQLDF 180 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 LRFPLGD+ K R++A+EM L +A+KSDSQDICFV QGKY D++ +I + GDIVH Sbjct: 181 LRFPLGDVPKSRTREMAQEMDLIVAEKSDSQDICFVPQGKYADIIAKIRPDAGVAGDIVH 240 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 L+G++LGRH+GI N+TIGQRRG+G+A G+P++V+ +D ++ V VGPRE+L RI LR+ Sbjct: 241 LDGRVLGRHDGIFNFTIGQRRGIGIATGDPVYVISIDAKTATVTVGPREALATRRIALRD 300 Query: 308 INWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 +NWLGD EDAV +G V++RS++ P P + D ++ E G++ GQACV Sbjct: 301 VNWLGDETLEDAVSEEGIDLHVRVRSTRPPRPARLTLEDGTAFITLTDGEDGISPGQACV 360 Query: 367 FYTSDSNEARVLGGGIIS 384 FY ++ + RVLGGG I+ Sbjct: 361 FYVDENPQTRVLGGGWIA 378 >gi|205822155|sp|Q131Q8|MNMA_RHOPS RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 398 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 222/401 (55%), Positives = 284/401 (70%), Gaps = 12/401 (2%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL+ P+D RVVVAMSGGVDSS AALLK GYDV+G+TLQLY+ A+ RKG+CC Sbjct: 2 LNSLDLEGRPQDTRVVVAMSGGVDSSATAALLKSQGYDVVGITLQLYDHGAATHRKGACC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V + I + HYV DYE RFR +VI FA SYA GETP+PC++CNR+VKF D Sbjct: 62 AGQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYALGETPVPCIECNRSVKFRD 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R+LGA LATGHY+ SR DDG R ++C D +RDQSYFLFATT++QL L Sbjct: 122 LLATARELGASALATGHYVSSRRL--DDGSRA-LIC-AADRDRDQSYFLFATTREQLDFL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K R+LAR+ GL +ADK DSQDICFV G+Y DVV+R+ G+IV L Sbjct: 178 RFPLGDMTKPQTRELARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGEIVDL 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 NG +LG H GI+++T+GQRRGLG+A PL+V+ LD RV+VGPRE+L + RI LR++ Sbjct: 238 NGHVLGSHPGIVHFTVGQRRGLGIASRAPLYVLRLDAAHRRVVVGPREALRMERIVLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GDG + AV DG + FV++RS++ P P +++ G V+ E GV+ GQACVFY Sbjct: 298 NWIGDGAIDQAVGDGLELFVRVRSTRAPQPAWLRAVGGGYEVELVAGEEGVSPGQACVFY 357 Query: 369 TSDSNEARVLGGGIISGSK--------RSDAVEESLLSVIG 401 + +ARVLGGG I + R DA +L ++ G Sbjct: 358 DAADGQARVLGGGFIKSAAPRWSADGVRDDAASPALAAMRG 398 >gi|91978423|ref|YP_571082.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris BisB5] gi|91684879|gb|ABE41181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodopseudomonas palustris BisB5] Length = 402 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 222/401 (55%), Positives = 284/401 (70%), Gaps = 12/401 (2%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL+ P+D RVVVAMSGGVDSS AALLK GYDV+G+TLQLY+ A+ RKG+CC Sbjct: 6 LNSLDLEGRPQDTRVVVAMSGGVDSSATAALLKSQGYDVVGITLQLYDHGAATHRKGACC 65 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V + I + HYV DYE RFR +VI FA SYA GETP+PC++CNR+VKF D Sbjct: 66 AGQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYALGETPVPCIECNRSVKFRD 125 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R+LGA LATGHY+ SR DDG R ++C D +RDQSYFLFATT++QL L Sbjct: 126 LLATARELGASALATGHYVSSRRL--DDGSRA-LIC-AADRDRDQSYFLFATTREQLDFL 181 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K R+LAR+ GL +ADK DSQDICFV G+Y DVV+R+ G+IV L Sbjct: 182 RFPLGDMTKPQTRELARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGEIVDL 241 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 NG +LG H GI+++T+GQRRGLG+A PL+V+ LD RV+VGPRE+L + RI LR++ Sbjct: 242 NGHVLGSHPGIVHFTVGQRRGLGIASRAPLYVLRLDAAHRRVVVGPREALRMERIVLRDV 301 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GDG + AV DG + FV++RS++ P P +++ G V+ E GV+ GQACVFY Sbjct: 302 NWIGDGAIDQAVGDGLELFVRVRSTRAPQPAWLRAVGGGYEVELVAGEEGVSPGQACVFY 361 Query: 369 TSDSNEARVLGGGIISGSK--------RSDAVEESLLSVIG 401 + +ARVLGGG I + R DA +L ++ G Sbjct: 362 DAADGQARVLGGGFIKSAAPRWSADGVRDDAASPALAAMRG 402 >gi|75674801|ref|YP_317222.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrobacter winogradskyi Nb-255] gi|123614062|sp|Q3SV21|MNMA_NITWN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|74419671|gb|ABA03870.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrobacter winogradskyi Nb-255] Length = 400 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 216/390 (55%), Positives = 282/390 (72%), Gaps = 4/390 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL+ P+D RVVVAMSGGVDSSV AALLK +GYDV+G+TLQLY+ A+ RKG+CC Sbjct: 2 LNSLDLEGRPQDTRVVVAMSGGVDSSVTAALLKSEGYDVVGITLQLYDHGAATHRKGACC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V + V HYV DYE RFR VI FA SYA+GETP+PC++CNR VKF D Sbjct: 62 AGQDIHDARNVAARLGVPHYVLDYESRFRETVIENFADSYASGETPVPCIECNRQVKFRD 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R+LGA LATGHY+ SR DG R ++C D +RDQSYFLFATT++QL L Sbjct: 122 LLATARELGAAALATGHYVSSRRLA--DGSRA-LLC-AADTDRDQSYFLFATTREQLDFL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K+ R+LAR GL +ADK DSQDICFV G+Y D++ R+ + GDIV L Sbjct: 178 RFPLGDMTKQQTRELARRFGLSVADKHDSQDICFVPTGRYTDIISRLKPNAMVSGDIVDL 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G ++G H GI+++T+GQRRGLG+A G PL+V+ LD + RV+VGPRE+L++HRI LR++ Sbjct: 238 DGHVIGHHEGIVHFTVGQRRGLGIASGAPLYVLSLDAANRRVVVGPREALKMHRIVLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GDG + A+ G + FV++RS++ P P +++ D V+ E GV+ GQACVFY Sbjct: 298 NWIGDGALDRAIGAGLELFVRVRSTRRPQPAWLRVVDGRYEVELVAGEEGVSPGQACVFY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLS 398 ++RVLGGG I+ + A E + S Sbjct: 358 DGAEGQSRVLGGGFIARAMAQRANEAAAQS 387 >gi|27382106|ref|NP_773635.1| tRNA-specific 2-thiouridylase MnmA [Bradyrhizobium japonicum USDA 110] gi|81735060|sp|Q89ES7|MNMA_BRAJA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|27355276|dbj|BAC52260.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Bradyrhizobium japonicum USDA 110] Length = 393 Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust. Identities = 215/378 (56%), Positives = 277/378 (73%), Gaps = 4/378 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL+ P+D RVVVAMSGGVDSS AALLK +GYDV+G+TLQLY+ A+ RKG+CC Sbjct: 2 LNSLDLEGRPQDTRVVVAMSGGVDSSTTAALLKAEGYDVVGITLQLYDHGAATHRKGACC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V + + HYV DYE+RFR +VI FA SYA GETP+PC++CNR++KF D Sbjct: 62 AGQDIHDARDVAAKLGIPHYVLDYEDRFRESVIDNFADSYALGETPVPCIECNRSIKFRD 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL R+LGA LATGHY+ SR DDG R ++ D +RDQSYFLFATTQ+QL L Sbjct: 122 LLKTARELGAQALATGHYVASRRL--DDGSR--VLVCAADADRDQSYFLFATTQEQLDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K R+LAR GL +ADK DSQDICFV G+Y D++ R+ GDIV L Sbjct: 178 RFPLGDMTKPETRELARRFGLAVADKHDSQDICFVPTGRYTDIITRLRPNAMDPGDIVDL 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LGRHNGI N+T+GQRRGLG+A PLFVV L+ + RV+VGPRE+L++HRI LR++ Sbjct: 238 DGRVLGRHNGIANFTVGQRRGLGIAAHAPLFVVRLEAANRRVVVGPREALKMHRISLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLG G + A+ +G + FV++RS++ P P +++ ++ E GV+ GQACVFY Sbjct: 298 NWLGGGDIDSAIGNGLEMFVRVRSTRSPQPAWLRGAGGHYEIELVAGEEGVSPGQACVFY 357 Query: 369 TSDSNEARVLGGGIISGS 386 + S +ARVLGGG I + Sbjct: 358 DAPSGQARVLGGGFIQSA 375 >gi|217978097|ref|YP_002362244.1| tRNA-specific 2-thiouridylase MnmA [Methylocella silvestris BL2] gi|217503473|gb|ACK50882.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylocella silvestris BL2] Length = 415 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 220/384 (57%), Positives = 275/384 (71%), Gaps = 7/384 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSL L K P RVVVAMSGGVDSSVVAAL+K GYDVI VT+QLY+ +A RKG+CC Sbjct: 18 LNSLGLPKPPAQTRVVVAMSGGVDSSVVAALMKEQGYDVIAVTMQLYDHGEAIHRKGACC 77 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DAR V +++ HYV DYEERFR VI PF+ SYA GETP+PCV CN +KF+D Sbjct: 78 AGQDIQDARLVAARLDIPHYVLDYEERFREKVINPFSHSYATGETPIPCVSCNSEIKFAD 137 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 L LGADVLATGHY+ +R D R++ R D RDQSYFLFATT++QL L Sbjct: 138 LFDTALDLGADVLATGHYVSTR----SDEAGERVLHRAFDGARDQSYFLFATTRRQLQML 193 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K VR LAR GL +ADK+DSQDICFV +GKY D+++R++ G A+ G+IVH+ Sbjct: 194 RFPLGDMTKTDVRALARRFGLIVADKADSQDICFVPKGKYSDLIERLSPGAAVPGEIVHI 253 Query: 249 NGQILGRHNGIINYTIGQRRGLGVA---MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 +G++LGRH G+I+YTIGQRRGLG+ GEPLFV+ LD +RV+VGPRE+L R +L Sbjct: 254 DGRVLGRHAGVIHYTIGQRRGLGLGDANAGEPLFVIKLDAAGARVVVGPREALATRRAHL 313 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 R +NW+GDG D +G FV++RS++ PV + D G +V+F E V+ GQAC Sbjct: 314 RAVNWIGDGELGDLPREGADIFVQVRSTRPPVAGRLYARDGGAHVEFVHDEDSVSPGQAC 373 Query: 366 VFYTSDSNEARVLGGGIISGSKRS 389 VFY SD ARVLGGG IS ++ + Sbjct: 374 VFYASDQPRARVLGGGFISSTESA 397 >gi|307944132|ref|ZP_07659473.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseibium sp. TrichSKD4] gi|307772478|gb|EFO31698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseibium sp. TrichSKD4] Length = 390 Score = 449 bits (1154), Expect = e-124, Method: Compositional matrix adjust. Identities = 222/383 (57%), Positives = 278/383 (72%), Gaps = 9/383 (2%) Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69 NSLDL P+D RVVVAMSGGVDSSVVAAL+K +GYDVIGVTLQLY+ A R SCCA Sbjct: 3 NSLDLPGRPEDTRVVVAMSGGVDSSVVAALMKEEGYDVIGVTLQLYDHGAAVSRAKSCCA 62 Query: 70 GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 G D++DARR + I + HYV DYE RF+ V+ FA SY AGETP+PCV CN+TVKF+DL Sbjct: 63 GVDIHDARRAAEKIGIPHYVLDYESRFKEQVMDRFADSYIAGETPIPCVSCNQTVKFTDL 122 Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 L + LGADVLATGHY+RSR DG +R + RP+DL+RDQSYFLFATTQ+QL +R Sbjct: 123 LKTAKDLGADVLATGHYVRSR----PDGNKRALF-RPVDLDRDQSYFLFATTQEQLDFIR 177 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 FPLG K VR LA + GL +A+K DSQDICFV G Y +V++++ A GDIVH++ Sbjct: 178 FPLGGRPKSEVRQLAEKFGLSVANKPDSQDICFVPNGDYTEVIRKLRPNAAEPGDIVHMD 237 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 G++LG+H G+I+YT+GQRRGLGVA GEPL+VV LD + RV+VGPRE+L + I LRE+N Sbjct: 238 GRVLGQHEGVIHYTVGQRRGLGVATGEPLYVVRLDADEKRVVVGPREALTTNTIILREVN 297 Query: 310 WLGD-GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 WLGD L E A +D F K+RS++ P P ++ + V+ E GVA GQACVF+ Sbjct: 298 WLGDMPLDEGAELD---LFAKVRSTRPPAPAILRHTAEKTTVELVTGEAGVAPGQACVFF 354 Query: 369 TSDSNEARVLGGGIISGSKRSDA 391 S+ ARVLGGG I+ ++RS A Sbjct: 355 DSEDETARVLGGGWIARTERSGA 377 >gi|86751223|ref|YP_487719.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris HaA2] gi|86574251|gb|ABD08808.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodopseudomonas palustris HaA2] Length = 402 Score = 448 bits (1153), Expect = e-124, Method: Compositional matrix adjust. Identities = 222/386 (57%), Positives = 280/386 (72%), Gaps = 5/386 (1%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 T LNSLDL P+D RVVVAMSGGVDSS AALLK GYDV+G+TLQLY+ A+ RKG+ Sbjct: 4 TMLNSLDLAGRPQDTRVVVAMSGGVDSSATAALLKSQGYDVVGITLQLYDHGAATHRKGA 63 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 CCAGQD++DAR V + I + HYV DYE RFR +VI FA SYA GETP+PC++CNR+VKF Sbjct: 64 CCAGQDIHDARDVAERIGIPHYVLDYESRFRESVIDSFADSYALGETPVPCIECNRSVKF 123 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 DLL+ R+LGA LATGHY+ SR DG R ++C D +RDQSYFLFATT++QL Sbjct: 124 RDLLATARELGASALATGHYVSSRRLA--DGSRA-LIC-AADRDRDQSYFLFATTREQLD 179 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 LRFPLGDM K RDLAR+ GL +ADK DSQDICFV G+Y DVV+R+ G+IV Sbjct: 180 FLRFPLGDMTKPQTRDLARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGEIV 239 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 LNG++LG H GI+++T+GQRRGLG+A PL+V+ LD RV+VGPRE+L + RI LR Sbjct: 240 DLNGRVLGSHPGIVHFTVGQRRGLGIASRAPLYVLRLDAARRRVVVGPREALRMERIVLR 299 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 ++NW+GDG + AV DG + FV++RS++ P P +++ G V+ E GV+ GQACV Sbjct: 300 DVNWIGDGALDRAVGDGLELFVRVRSTRAPQPAWLRAVKGGYEVELVAGEEGVSPGQACV 359 Query: 367 FYTSDSNEARVLGGGII-SGSKRSDA 391 FY + +ARVLGGG I S + RS A Sbjct: 360 FYDAAEGQARVLGGGFIKSAAPRSIA 385 >gi|90422506|ref|YP_530876.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris BisB18] gi|90104520|gb|ABD86557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodopseudomonas palustris BisB18] Length = 404 Score = 448 bits (1152), Expect = e-124, Method: Compositional matrix adjust. Identities = 216/391 (55%), Positives = 284/391 (72%), Gaps = 4/391 (1%) Query: 6 ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65 A LNSLDL+ P+D R+VVAMSGGVDSS AALLK +GYDV+G+TLQLY+ A RKG Sbjct: 3 AAMLNSLDLEGRPQDTRIVVAMSGGVDSSTTAALLKSEGYDVVGITLQLYDHGAAIHRKG 62 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 +CCAGQD++DAR V D I + HYV DYE RF+ +VI FA+SYA GETP+PC++CNR++K Sbjct: 63 ACCAGQDIHDARAVADRIGIPHYVLDYESRFQESVIDSFAASYATGETPVPCIECNRSIK 122 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F DLLS R+LGA LATGHY+ SR DG R ++C D +RDQSYFLFATT+ QL Sbjct: 123 FRDLLSTARELGASALATGHYVSSRRLA--DGSRA-LVC-ASDADRDQSYFLFATTRDQL 178 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 LRFPLGDM K R+LAR+ GL +ADK DSQDICFV G+Y DVV R+ G+I Sbjct: 179 DYLRFPLGDMTKPQTRELARKFGLSVADKHDSQDICFVPTGRYTDVVGRLKPNAMEPGEI 238 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 V L+G++LG+H GI+++T+GQRRGLG+A PL+V+ L+ ++ RV+VGPRE+L + RI L Sbjct: 239 VDLDGRVLGKHQGIVHFTVGQRRGLGIASTAPLYVLRLEPSTRRVVVGPREALRMDRIVL 298 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 R++NW+GD + AV DG + FV++RS++ P P +++ D G V+ E GV+ GQAC Sbjct: 299 RDVNWIGDSSLDRAVGDGLELFVRVRSTRRPQPAWLRAQDGGYQVELVAGEDGVSPGQAC 358 Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEESL 396 VFY + + +ARVLGGG I + A + +L Sbjct: 359 VFYDAPAGQARVLGGGFIKSATPRAAGKSAL 389 >gi|182679942|ref|YP_001834088.1| tRNA-specific 2-thiouridylase MnmA [Beijerinckia indica subsp. indica ATCC 9039] gi|205813049|sp|B2IBH3|MNMA_BEII9 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|182635825|gb|ACB96599.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Beijerinckia indica subsp. indica ATCC 9039] Length = 431 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 219/391 (56%), Positives = 285/391 (72%), Gaps = 9/391 (2%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSL L K P RVVVAMSGGVDSSVVAALLKR+GY+VIGVTLQLY+ +A RKG+CC Sbjct: 18 LNSLGLPKPPALTRVVVAMSGGVDSSVVAALLKREGYEVIGVTLQLYDHGEAVHRKGACC 77 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DAR+V D + + HYV DYEERFR VI PFA SYA GETP+PCV CN +KF+D Sbjct: 78 AGQDIQDARQVADQLGIPHYVLDYEERFRRKVIDPFAQSYATGETPIPCVSCNSEIKFAD 137 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 L + LGADVLATGHY+ S+ DG R + R +D RDQSYFLFATT QL L Sbjct: 138 LFETAQHLGADVLATGHYVSSKAEA--DGG--RALYRSLDSSRDQSYFLFATTNAQLELL 193 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGD+ K VR +AR++GL +ADK+DSQDICFV GKY DV++R++ G + G+I+H+ Sbjct: 194 RFPLGDLAKPDVRQMARQLGLVVADKADSQDICFVPSGKYSDVIERLSPGAVVPGEILHV 253 Query: 249 NGQILGRHNGIINYTIGQRR-----GLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 +G++LGRH+G+I+YTIGQRR +G GEPL+V+ LD ++VIVGPR++L R+ Sbjct: 254 DGRVLGRHSGVIHYTIGQRRGLGLGAVGAGAGEPLYVIRLDAAKAQVIVGPRQALATRRV 313 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 +LR +NW+G G +D G + FV++RS++ P+P F+ ++ ++VDF E GV+ GQ Sbjct: 314 HLRGVNWIGPGSLQDMDEHGLEIFVQVRSTRAPIPGFLHAHESEIWVDFALDEDGVSPGQ 373 Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAVEE 394 ACVFY +D ARVLGGG IS ++ + + E Sbjct: 374 ACVFYENDQPRARVLGGGFISATESALQMRE 404 >gi|205822083|sp|Q2ISK2|MNMA_RHOP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 398 Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust. Identities = 221/384 (57%), Positives = 279/384 (72%), Gaps = 5/384 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL P+D RVVVAMSGGVDSS AALLK GYDV+G+TLQLY+ A+ RKG+CC Sbjct: 2 LNSLDLAGRPQDTRVVVAMSGGVDSSATAALLKSQGYDVVGITLQLYDHGAATHRKGACC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V + I + HYV DYE RFR +VI FA SYA GETP+PC++CNR+VKF D Sbjct: 62 AGQDIHDARDVAERIGIPHYVLDYESRFRESVIDSFADSYALGETPVPCIECNRSVKFRD 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R+LGA LATGHY+ SR DG R ++C D +RDQSYFLFATT++QL L Sbjct: 122 LLATARELGASALATGHYVSSRRLA--DGSRA-LIC-AADRDRDQSYFLFATTREQLDFL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K RDLAR+ GL +ADK DSQDICFV G+Y DVV+R+ G+IV L Sbjct: 178 RFPLGDMTKPQTRDLARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGEIVDL 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 NG++LG H GI+++T+GQRRGLG+A PL+V+ LD RV+VGPRE+L + RI LR++ Sbjct: 238 NGRVLGSHPGIVHFTVGQRRGLGIASRAPLYVLRLDAARRRVVVGPREALRMERIVLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GDG + AV DG + FV++RS++ P P +++ G V+ E GV+ GQACVFY Sbjct: 298 NWIGDGALDRAVGDGLELFVRVRSTRAPQPAWLRAVKGGYEVELVAGEEGVSPGQACVFY 357 Query: 369 TSDSNEARVLGGGII-SGSKRSDA 391 + +ARVLGGG I S + RS A Sbjct: 358 DAAEGQARVLGGGFIKSAAPRSIA 381 >gi|205822138|sp|Q21AM9|MNMA_RHOPB RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 400 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 215/388 (55%), Positives = 283/388 (72%), Gaps = 4/388 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL+ P+D R+VVAMSGGVDSS AALLK +GYDV+G+TLQLY+ A RKG+CC Sbjct: 2 LNSLDLEGRPQDTRIVVAMSGGVDSSTTAALLKSEGYDVVGITLQLYDHGAAIHRKGACC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V D I + HYV DYE RF+ +VI FA+SYA GETP+PC++CNR++KF D Sbjct: 62 AGQDIHDARAVADRIGIPHYVLDYESRFQESVIDSFAASYATGETPVPCIECNRSIKFRD 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LLS R+LGA LATGHY+ SR DG R ++C D +RDQSYFLFATT+ QL L Sbjct: 122 LLSTARELGASALATGHYVSSRRLA--DGSRA-LVC-ASDADRDQSYFLFATTRDQLDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K R+LAR+ GL +ADK DSQDICFV G+Y DVV R+ G+IV L Sbjct: 178 RFPLGDMTKPQTRELARKFGLSVADKHDSQDICFVPTGRYTDVVGRLKPNAMEPGEIVDL 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG+H GI+++T+GQRRGLG+A PL+V+ L+ ++ RV+VGPRE+L + RI LR++ Sbjct: 238 DGRVLGKHQGIVHFTVGQRRGLGIASTAPLYVLRLEPSTRRVVVGPREALRMDRIVLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GD + AV DG + FV++RS++ P P +++ D G V+ E GV+ GQACVFY Sbjct: 298 NWIGDSSLDRAVGDGLELFVRVRSTRRPQPAWLRAQDGGYQVELVAGEDGVSPGQACVFY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + + +ARVLGGG I + A + +L Sbjct: 358 DAPAGQARVLGGGFIKSATPRAAGKSAL 385 >gi|90419040|ref|ZP_01226951.1| tRNA methyl transferase ((5-methylaminomethyl-2-thiouridylate)- methyltransferase) [Aurantimonas manganoxydans SI85-9A1] gi|90337120|gb|EAS50825.1| tRNA methyl transferase ((5-methylaminomethyl-2-thiouridylate)- methyltransferase) [Aurantimonas manganoxydans SI85-9A1] Length = 425 Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust. Identities = 217/394 (55%), Positives = 280/394 (71%), Gaps = 5/394 (1%) Query: 2 VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61 + E NSLDL K P D RVVVAMSGGVDSSVVAA+LK GYDV+G+TLQLY++ + + Sbjct: 30 TLPEWPMSNSLDLPKPPADTRVVVAMSGGVDSSVVAAILKEQGYDVVGITLQLYDAGEGA 89 Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 +R GSCCAGQD++DARRV +T+ + HYV DYE+RFR AVI PFA+SY AGETP+PCV CN Sbjct: 90 RRAGSCCAGQDIHDARRVAETLGIHHYVLDYEDRFRKAVINPFAASYLAGETPIPCVACN 149 Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181 +TVKF DLL+ + LGAD LATGHYI SR +G R + RP DL+RDQSYFL+ TT Sbjct: 150 QTVKFRDLLATAQDLGADALATGHYIESR----QNGAHRSLY-RPADLDRDQSYFLYGTT 204 Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 Q+QL LRFPLG + K R+LA GL +A K DSQDICFV +G+Y DV++++ + Sbjct: 205 QEQLDFLRFPLGGLTKPQTRELAERHGLVVAAKPDSQDICFVAKGRYSDVIRKLRPEASE 264 Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH 301 GDIVHL+G+ LGRH GI++YTIGQRRGLG+A +PL+VV LD +++V+VGPRE+L Sbjct: 265 PGDIVHLDGRHLGRHAGIVHYTIGQRRGLGIAAADPLYVVALDPATAQVVVGPREALATR 324 Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVAS 361 R+ LR++NWLG D + FV++RS++ P P +Q + V+ E GVA Sbjct: 325 RLTLRDVNWLGRTDPADMAAADEEIFVRVRSTRPPAPARIQVENGVWTVELASGEDGVAP 384 Query: 362 GQACVFYTSDSNEARVLGGGIISGSKRSDAVEES 395 GQACVFY + A VLGGG+IS + R + + Sbjct: 385 GQACVFYRGEGVGAEVLGGGVISVTDRPQRAQRA 418 >gi|92116313|ref|YP_576042.1| tRNA-specific 2-thiouridylase MnmA [Nitrobacter hamburgensis X14] gi|122418585|sp|Q1QQB5|MNMA_NITHX RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|91799207|gb|ABE61582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrobacter hamburgensis X14] Length = 400 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 209/376 (55%), Positives = 276/376 (73%), Gaps = 4/376 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSL+L+ P+D RVVVAMSGGVDSSV AALLK +GYDV+G+TLQLY+ A+ RKG+CC Sbjct: 2 LNSLELEGRPQDTRVVVAMSGGVDSSVTAALLKSEGYDVVGITLQLYDHGAATHRKGACC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V + + + HYV DYE RFR VI FA SYA+GETP+PC++CNR VKF D Sbjct: 62 AGQDIHDARNVAERLGIPHYVLDYENRFRETVIENFADSYASGETPVPCIECNRLVKFRD 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R+LGA LATGHY+ S G R ++C D +RDQSYFLFATT++QL L Sbjct: 122 LLATARELGAAALATGHYVASHRMAGGS---RALLC-AADADRDQSYFLFATTREQLDFL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K R+LAR GL +ADK DSQDICFV G+Y D++ ++ + GDIV L Sbjct: 178 RFPLGDMTKPQTRELARSFGLSVADKHDSQDICFVPTGRYTDIISQLKPNAMVSGDIVDL 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G ++G H+GI+++T+GQRRGLG+A G PL+V+ LD + RV+VGPRE+L++HRI LR++ Sbjct: 238 DGHVIGHHDGIVHFTVGQRRGLGIASGAPLYVLSLDAANRRVVVGPREALKMHRIILRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GDG + AV G + FV++RS++ P P +++ D ++ E GV+ GQACVFY Sbjct: 298 NWIGDGALDRAVGAGLELFVRVRSTRKPQPAWLRAIDGRYEIELVAGEEGVSPGQACVFY 357 Query: 369 TSDSNEARVLGGGIIS 384 +ARVLGGG I+ Sbjct: 358 DGLEGQARVLGGGFIA 373 >gi|192289904|ref|YP_001990509.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris TIE-1] gi|192283653|gb|ACF00034.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodopseudomonas palustris TIE-1] Length = 401 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 215/378 (56%), Positives = 280/378 (74%), Gaps = 4/378 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL+ P+D RVVVAMSGGVDSS AALLK GYDV+G+TLQLY+ +A RKG+CC Sbjct: 6 LNSLDLEGRPQDTRVVVAMSGGVDSSATAALLKAQGYDVVGITLQLYDHGEAIHRKGACC 65 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V + I + HYV DYE RFR +VI FA SYA+GETP+PC++CNR+VKF D Sbjct: 66 AGQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYASGETPVPCIECNRSVKFRD 125 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R+LGA LATGHY+ SR DDG R ++C D +RDQSYFLFATT++QL L Sbjct: 126 LLATARELGASALATGHYVSSRRL--DDGSRA-LVC-AADRDRDQSYFLFATTREQLQFL 181 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K R+LAR+ GL +ADK DSQDICFV G+Y DVV+R+ GDIV + Sbjct: 182 RFPLGDMTKPQTRELARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGDIVDV 241 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG+H GI+++T+GQRRGLG+A PL+V+ LD +V+VGPRE+L + RI LR+I Sbjct: 242 DGRVLGQHPGIVHFTVGQRRGLGIASRSPLYVLRLDAARRQVVVGPREALLMDRIVLRDI 301 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GDG +D + DG + FV++RS++ P P +++ + G V+ E GV+ GQACVFY Sbjct: 302 NWIGDGALDDVIGDGLELFVRVRSTRAPQPAWLRAANGGYEVELVVGEEGVSPGQACVFY 361 Query: 369 TSDSNEARVLGGGIISGS 386 + +ARVLGGG I + Sbjct: 362 DAAEGQARVLGGGFIKSA 379 >gi|39934381|ref|NP_946657.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris CGA009] gi|39648230|emb|CAE26749.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodopseudomonas palustris CGA009] Length = 401 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 215/378 (56%), Positives = 280/378 (74%), Gaps = 4/378 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL+ P+D RVVVAMSGGVDSS AALLK GYDV+G+TLQLY+ +A RKG+CC Sbjct: 6 LNSLDLEGRPQDTRVVVAMSGGVDSSATAALLKAQGYDVVGITLQLYDHGEAIHRKGACC 65 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V + I + HYV DYE RFR +VI FA SYA+GETP+PC++CNR+VKF D Sbjct: 66 AGQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYASGETPVPCIECNRSVKFRD 125 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R+LGA LATGHY+ SR DDG R ++C D +RDQSYFLFATT++QL L Sbjct: 126 LLATARELGASALATGHYVSSRRL--DDGSRA-LVC-AADRDRDQSYFLFATTREQLQFL 181 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K R+LAR+ GL +ADK DSQDICFV G+Y DVV+R+ GDIV + Sbjct: 182 RFPLGDMTKPQTRELARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGDIVDV 241 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG+H GI+++T+GQRRGLG+A PL+V+ LD +V+VGPRE+L + RI LR+I Sbjct: 242 DGRVLGQHPGIVHFTVGQRRGLGIASRSPLYVLRLDAAQRQVVVGPREALLMDRIVLRDI 301 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GDG +D + DG + FV++RS++ P P +++ + G V+ E GV+ GQACVFY Sbjct: 302 NWIGDGSLDDVIGDGLELFVRVRSTRAPQPAWLRAANGGYEVELVVGEEGVSPGQACVFY 361 Query: 369 TSDSNEARVLGGGIISGS 386 + +ARVLGGG I + Sbjct: 362 DAAEGQARVLGGGFIKSA 379 >gi|205822121|sp|Q6NA79|MNMA_RHOPA RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 397 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 215/378 (56%), Positives = 280/378 (74%), Gaps = 4/378 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL+ P+D RVVVAMSGGVDSS AALLK GYDV+G+TLQLY+ +A RKG+CC Sbjct: 2 LNSLDLEGRPQDTRVVVAMSGGVDSSATAALLKAQGYDVVGITLQLYDHGEAIHRKGACC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V + I + HYV DYE RFR +VI FA SYA+GETP+PC++CNR+VKF D Sbjct: 62 AGQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYASGETPVPCIECNRSVKFRD 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R+LGA LATGHY+ SR DDG R ++C D +RDQSYFLFATT++QL L Sbjct: 122 LLATARELGASALATGHYVSSRRL--DDGSRA-LVC-AADRDRDQSYFLFATTREQLQFL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K R+LAR+ GL +ADK DSQDICFV G+Y DVV+R+ GDIV + Sbjct: 178 RFPLGDMTKPQTRELARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGDIVDV 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG+H GI+++T+GQRRGLG+A PL+V+ LD +V+VGPRE+L + RI LR+I Sbjct: 238 DGRVLGQHPGIVHFTVGQRRGLGIASRSPLYVLRLDAAQRQVVVGPREALLMDRIVLRDI 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GDG +D + DG + FV++RS++ P P +++ + G V+ E GV+ GQACVFY Sbjct: 298 NWIGDGSLDDVIGDGLELFVRVRSTRAPQPAWLRAANGGYEVELVVGEEGVSPGQACVFY 357 Query: 369 TSDSNEARVLGGGIISGS 386 + +ARVLGGG I + Sbjct: 358 DAAEGQARVLGGGFIKSA 375 >gi|316935452|ref|YP_004110434.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodopseudomonas palustris DX-1] gi|315603166|gb|ADU45701.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodopseudomonas palustris DX-1] Length = 401 Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust. Identities = 212/378 (56%), Positives = 278/378 (73%), Gaps = 4/378 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL+ P+D RVVVAMSGGVDSS AALLK GYDV+G+TLQLY+ A RKG+CC Sbjct: 6 LNSLDLEGRPQDTRVVVAMSGGVDSSATAALLKAQGYDVVGITLQLYDHGAAIHRKGACC 65 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V + I + HYV DYE RFR +VI FA SYA+GETP+PC++CNR+VKF D Sbjct: 66 AGQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYASGETPVPCIECNRSVKFRD 125 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R+LGA LATGHY+ SR + R ++C D +RDQSYFLFATT++QL L Sbjct: 126 LLATARELGASALATGHYVSSRRL---ENGSRALVC-AADRDRDQSYFLFATTREQLQFL 181 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K R+LAR+ GL +ADK DSQDICFV G+Y DVV+R+ GDIV + Sbjct: 182 RFPLGDMTKPQTRELARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGDIVDI 241 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG+H GI+++T+GQRRGLG+A PL+V+ LD +V+VGPRE+L + RI LR++ Sbjct: 242 DGRVLGQHPGIVHFTVGQRRGLGIASRAPLYVLRLDAARRQVVVGPREALLMDRIVLRDV 301 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GDG +D V DG + FV++RS+++P P +++ + G V+ E GV+ GQACVFY Sbjct: 302 NWIGDGALDDVVGDGLELFVRVRSTREPQPAWLRAANGGYEVELVVGEEGVSPGQACVFY 361 Query: 369 TSDSNEARVLGGGIISGS 386 + +ARVLGGG I + Sbjct: 362 DAAEGQARVLGGGFIKSA 379 >gi|254503485|ref|ZP_05115636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Labrenzia alexandrii DFL-11] gi|222439556|gb|EEE46235.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Labrenzia alexandrii DFL-11] Length = 449 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 217/381 (56%), Positives = 271/381 (71%), Gaps = 7/381 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL P+D RVVVAMSGGVDSSVVAA++ +GYDVIGVTLQLY+ A + SCC Sbjct: 59 LNSLDLPGRPEDTRVVVAMSGGVDSSVVAAMMHAEGYDVIGVTLQLYDHGAAVAKTKSCC 118 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AG D++DARR + I + HYV DYE RF+ V+ FA SY AGETP+PCV CN+TVKF+D Sbjct: 119 AGVDIHDARRAAEKIGIPHYVLDYESRFKEQVMDRFADSYIAGETPIPCVSCNQTVKFTD 178 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL R LGAD LATGHY+RS G +R + RP DL+RDQSYFLFATTQ+QL + Sbjct: 179 LLKTARDLGADALATGHYVRS----ATKGNKRALF-RPADLDRDQSYFLFATTQEQLDFV 233 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG M K VR LA E GL +A+K DSQDICFV G Y V++++ A G+IVH+ Sbjct: 234 RFPLGGMPKSQVRTLAEEFGLSVANKPDSQDICFVPNGDYAAVIRKLRPNAAEPGEIVHM 293 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG HNGII++TIGQRRG+GVA GEPL+VV LD + RVIVGPRE+L I LRE+ Sbjct: 294 DGRVLGEHNGIIHFTIGQRRGIGVATGEPLYVVRLDADERRVIVGPREALATRTILLREM 353 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GD ++ D + F K+RS++ P P ++ + +VD E GVA GQACVF+ Sbjct: 354 NWIGDQPLDEG--DEIEVFAKVRSTRPPAPAALRILNGKAFVDLANGETGVAPGQACVFF 411 Query: 369 TSDSNEARVLGGGIISGSKRS 389 SD ARVLGGG I ++R+ Sbjct: 412 DSDDETARVLGGGWIHKTERT 432 >gi|118593646|ref|ZP_01551022.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Stappia aggregata IAM 12614] gi|118433757|gb|EAV40418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Stappia aggregata IAM 12614] Length = 392 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 215/380 (56%), Positives = 272/380 (71%), Gaps = 7/380 (1%) Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69 NSLDL P+D RVVVAMSGGVDSSVVAAL+K +GYDVIGVTLQLY+ A + SCCA Sbjct: 3 NSLDLPGRPEDTRVVVAMSGGVDSSVVAALMKAEGYDVIGVTLQLYDHGAAVSKAKSCCA 62 Query: 70 GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 G D++DARR +TI + HYV DYE RF+ V+ FA SY AGETP+PCV CN+TVKF+DL Sbjct: 63 GVDIHDARRAAETIGIPHYVLDYESRFKEQVMDRFADSYIAGETPIPCVSCNQTVKFTDL 122 Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 L + LGAD LATGHY+RS +R + RP DL+RDQSYFLFATTQ QL +R Sbjct: 123 LKTAKDLGADALATGHYVRST-----QQGNKRALFRPADLDRDQSYFLFATTQDQLDFIR 177 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 FPLG M K VR+LA E GL +A+K DSQDICFV G Y +V++++ A G+IVH++ Sbjct: 178 FPLGGMPKSKVRELAAEFGLTVANKPDSQDICFVPNGDYAEVIRKLRPNAAEPGEIVHMD 237 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 G++LG H+GII+YTIGQRRGLGVA G+PL+VV LD + RV+VGPRE+L I LRE+N Sbjct: 238 GRVLGEHDGIIHYTIGQRRGLGVATGDPLYVVRLDPDERRVVVGPREALATRTILLREMN 297 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 W+GD ++ D + F K+RS++ P P ++ + +VD E GVA GQACVF+ Sbjct: 298 WIGDQPLDEG--DEIELFAKVRSTRPPAPATLRILNGKGFVDLANGETGVAPGQACVFFD 355 Query: 370 SDSNEARVLGGGIISGSKRS 389 +D ARVLGGG I ++R+ Sbjct: 356 TDDETARVLGGGWIHKTERT 375 >gi|154252635|ref|YP_001413459.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Parvibaculum lavamentivorans DS-1] gi|154156585|gb|ABS63802.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Parvibaculum lavamentivorans DS-1] Length = 462 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 219/368 (59%), Positives = 265/368 (72%), Gaps = 9/368 (2%) Query: 5 EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64 E T LNSLDL P+D RVVVAMSGGVDSSV AALLK GYDV+G+TLQLY+ A RK Sbjct: 63 EMTGLNSLDLPGRPEDTRVVVAMSGGVDSSVTAALLKEQGYDVVGITLQLYDHGAAVSRK 122 Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 G+CCAGQD+ DARRV D I + HYV DYE+RFR AV+ FA SYAAGETP+PCV CN V Sbjct: 123 GACCAGQDIQDARRVADQIGIPHYVLDYEDRFRRAVMDDFADSYAAGETPIPCVRCNERV 182 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 KF DLL R LGA LATGHYI SR G R + RP D ERDQSYFLFATTQ+Q Sbjct: 183 KFRDLLDTARDLGAAALATGHYIASR-----RGAAGRELHRPRDEERDQSYFLFATTQEQ 237 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 L LRFPLG++ K R LA MGL++A K DSQDICFV G+Y +V+++ G + G+ Sbjct: 238 LEFLRFPLGELTKPEARALADRMGLEVAGKPDSQDICFVPTGRYTTIVEKLRPGASAPGE 297 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEV 300 +VHL+G++LGRH+GI+N+TIGQRRGLG+ + EPLFVV LD +VIVGPRE+LE Sbjct: 298 VVHLDGRVLGRHSGIVNFTIGQRRGLGIGASEPVSEPLFVVKLDPLKRQVIVGPREALET 357 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360 ++ LR+INWLGDG F + +G K K+RS++ PVP + R +G V+ +SE GVA Sbjct: 358 QKLTLRDINWLGDGPFAELPGEGLKIVAKVRSTRPPVPARLFRTGEGAVVELLESEGGVA 417 Query: 361 SGQACVFY 368 GQACVFY Sbjct: 418 PGQACVFY 425 >gi|299131958|ref|ZP_07025153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Afipia sp. 1NLS2] gi|298592095|gb|EFI52295.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Afipia sp. 1NLS2] Length = 393 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 215/376 (57%), Positives = 267/376 (71%), Gaps = 4/376 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL+ P RVVVAMSGGVDSS AALLK +GYDVIG+TLQLY+ A+ RKG+CC Sbjct: 2 LNSLDLEGPPSGTRVVVAMSGGVDSSTTAALLKAEGYDVIGITLQLYDHGAATHRKGACC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V + I + HYV DYE RFR +VI FA SY GETP+PC++CNR+VKF D Sbjct: 62 AGQDIHDARDVAERIGIPHYVLDYESRFRESVIDRFAESYVLGETPVPCIECNRSVKFRD 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R+LGA LATGHY+ SR DG R M D +RDQSYFLFATTQ QL DL Sbjct: 122 LLTTARELGAKALATGHYVASRRQA--DGSR--AMVCAADADRDQSYFLFATTQDQLNDL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K R+LAR L +A+K DSQDICFV G+Y DV++R+ GDIV L Sbjct: 178 RFPLGDMTKTQTRELARRFDLPVAEKHDSQDICFVPTGRYTDVIERMKPNALQPGDIVDL 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 G++LG H GI+N+TIGQRRG+G+A EPL+VV LD + RVIVGPR +L I LR+I Sbjct: 238 RGRVLGHHQGIVNFTIGQRRGIGIAAAEPLYVVALDAAARRVIVGPRAALRKSVITLRDI 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GDG FE A +G ++K+RS++ P ++ N D V+ E G++ GQACVFY Sbjct: 298 NWIGDGSFERAATEGRDLYIKVRSTRPPQAAHLRMNGDHCEVELLAGEEGISPGQACVFY 357 Query: 369 TSDSNEARVLGGGIIS 384 + + +ARVLGGG I+ Sbjct: 358 DAPAGQARVLGGGFIT 373 >gi|218460955|ref|ZP_03501046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhizobium etli Kim 5] Length = 353 Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust. Identities = 207/325 (63%), Positives = 251/325 (77%), Gaps = 1/325 (0%) Query: 6 ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65 A LN+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+ A R G Sbjct: 7 APPLNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAG 66 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 SCCAGQD+ DARRVC+T+ + HYV DYE+RFR VI PFA SY AGETP+PCV CN+TVK Sbjct: 67 SCCAGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVK 126 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F+DLL+ ++LGAD LATGHYIRSR + RR + RP D +RDQSYFLFATTQQQ+ Sbjct: 127 FADLLATAKELGADALATGHYIRSRPNPSPEHPGRRALFRPADADRDQSYFLFATTQQQI 186 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 LRFPLG + K R LA EMGL +A K+DSQDICFV QGKY D++ ++ AL G+I Sbjct: 187 DYLRFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEI 246 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 VHL+G++LG H GI+++TIGQRRG+G+A GEPL+VVYLD S RVIVGP+E+LE HR+YL Sbjct: 247 VHLDGRVLGSHEGILHFTIGQRRGIGIATGEPLYVVYLDARSRRVIVGPKEALETHRVYL 306 Query: 306 REINWLGD-GLFEDAVVDGFKCFVK 329 R++NWLGD L E A GF C K Sbjct: 307 RDVNWLGDETLAEAASGGGFACTPK 331 >gi|115523063|ref|YP_779974.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris BisA53] gi|115517010|gb|ABJ04994.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodopseudomonas palustris BisA53] Length = 419 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 214/378 (56%), Positives = 279/378 (73%), Gaps = 4/378 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL+ P+D RVVVAMSGGVDSS AALLK +GYDV+G+TLQLY+ +A RKG+CC Sbjct: 21 LNSLDLEGRPQDTRVVVAMSGGVDSSTTAALLKAEGYDVVGITLQLYDHGEAIHRKGACC 80 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V + I + HYV DYE RFR +VI FA+SYA GETP+PC++CNR++KF D Sbjct: 81 AGQDIHDARTVAERIGIPHYVLDYESRFRESVIDSFATSYATGETPVPCIECNRSIKFRD 140 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LLS R+LGA VLATGHY+ SR DG R ++C D +RDQSYFLFATT++QL L Sbjct: 141 LLSTARELGAAVLATGHYVSSRRL--PDGSRA-LVC-AADADRDQSYFLFATTREQLDFL 196 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K R+LAR GL +ADK DSQDICFV G+Y DVV R+ GDIV L Sbjct: 197 RFPLGDMTKPQTRELARSFGLSVADKHDSQDICFVPSGRYSDVVGRLKPNAMEPGDIVDL 256 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG+H+GI+++T+GQRRGLG+A PL+V+ L+ ++ RV+VGPR +L + RI LR++ Sbjct: 257 DGRVLGKHHGIVHFTVGQRRGLGIASHAPLYVLRLEPSTRRVVVGPRAALRMDRILLRDV 316 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GD + AV DG + FV++RS++ P P +++ D V+ E GV+ GQACVFY Sbjct: 317 NWIGDNSLDLAVGDGLEMFVRVRSTRRPQPAWLRAIDGEYQVELIAGEDGVSPGQACVFY 376 Query: 369 TSDSNEARVLGGGIISGS 386 + +ARVLGGG I + Sbjct: 377 DAPEGQARVLGGGFIKSA 394 >gi|205822308|sp|A7HV69|MNMA_PARL1 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 399 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 218/366 (59%), Positives = 264/366 (72%), Gaps = 9/366 (2%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 T LNSLDL P+D RVVVAMSGGVDSSV AALLK GYDV+G+TLQLY+ A RKG+ Sbjct: 2 TGLNSLDLPGRPEDTRVVVAMSGGVDSSVTAALLKEQGYDVVGITLQLYDHGAAVSRKGA 61 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 CCAGQD+ DARRV D I + HYV DYE+RFR AV+ FA SYAAGETP+PCV CN VKF Sbjct: 62 CCAGQDIQDARRVADQIGIPHYVLDYEDRFRRAVMDDFADSYAAGETPIPCVRCNERVKF 121 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 DLL R LGA LATGHYI SR G R + RP D ERDQSYFLFATTQ+QL Sbjct: 122 RDLLDTARDLGAAALATGHYIASR-----RGAAGRELHRPRDEERDQSYFLFATTQEQLE 176 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 LRFPLG++ K R LA MGL++A K DSQDICFV G+Y +V+++ G + G++V Sbjct: 177 FLRFPLGELTKPEARALADRMGLEVAGKPDSQDICFVPTGRYTTIVEKLRPGASAPGEVV 236 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHR 302 HL+G++LGRH+GI+N+TIGQRRGLG+ + EPLFVV LD +VIVGPRE+LE + Sbjct: 237 HLDGRVLGRHSGIVNFTIGQRRGLGIGASEPVSEPLFVVKLDPLKRQVIVGPREALETQK 296 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362 + LR+INWLGDG F + +G K K+RS++ PVP + R +G V+ +SE GVA G Sbjct: 297 LTLRDINWLGDGPFAELPGEGLKIVAKVRSTRPPVPARLFRTGEGAVVELLESEGGVAPG 356 Query: 363 QACVFY 368 QACVFY Sbjct: 357 QACVFY 362 >gi|205821605|sp|Q07SU0|MNMA_RHOP5 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 400 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 214/378 (56%), Positives = 279/378 (73%), Gaps = 4/378 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL+ P+D RVVVAMSGGVDSS AALLK +GYDV+G+TLQLY+ +A RKG+CC Sbjct: 2 LNSLDLEGRPQDTRVVVAMSGGVDSSTTAALLKAEGYDVVGITLQLYDHGEAIHRKGACC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V + I + HYV DYE RFR +VI FA+SYA GETP+PC++CNR++KF D Sbjct: 62 AGQDIHDARTVAERIGIPHYVLDYESRFRESVIDSFATSYATGETPVPCIECNRSIKFRD 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LLS R+LGA VLATGHY+ SR DG R ++C D +RDQSYFLFATT++QL L Sbjct: 122 LLSTARELGAAVLATGHYVSSRRL--PDGSRA-LVC-AADADRDQSYFLFATTREQLDFL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K R+LAR GL +ADK DSQDICFV G+Y DVV R+ GDIV L Sbjct: 178 RFPLGDMTKPQTRELARSFGLSVADKHDSQDICFVPSGRYSDVVGRLKPNAMEPGDIVDL 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG+H+GI+++T+GQRRGLG+A PL+V+ L+ ++ RV+VGPR +L + RI LR++ Sbjct: 238 DGRVLGKHHGIVHFTVGQRRGLGIASHAPLYVLRLEPSTRRVVVGPRAALRMDRILLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GD + AV DG + FV++RS++ P P +++ D V+ E GV+ GQACVFY Sbjct: 298 NWIGDNSLDLAVGDGLEMFVRVRSTRRPQPAWLRAIDGEYQVELIAGEDGVSPGQACVFY 357 Query: 369 TSDSNEARVLGGGIISGS 386 + +ARVLGGG I + Sbjct: 358 DAPEGQARVLGGGFIKSA 375 >gi|114706635|ref|ZP_01439536.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fulvimarina pelagi HTCC2506] gi|114538027|gb|EAU41150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fulvimarina pelagi HTCC2506] Length = 394 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 215/383 (56%), Positives = 272/383 (71%), Gaps = 10/383 (2%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 T LNSLD+ K P+D RV+VAMSGGVDSSV AA+LK +GYDV+G+TLQLY++ + G+ Sbjct: 3 THLNSLDIPKAPEDTRVIVAMSGGVDSSVTAAILKDEGYDVVGITLQLYDAGDTPAKAGA 62 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 CCAGQD+ DARRVCD + + HYV DYEE FR AVI PFA +Y AGETP+PCV CN+TVKF Sbjct: 63 CCAGQDIRDARRVCDLLGIPHYVLDYEENFREAVIDPFADAYVAGETPIPCVSCNQTVKF 122 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKR--RRIMCRPMDLERDQSYFLFATTQQQ 184 DLL LG D LATGHYI SR KR R + RP DL+RDQSYFL+ TTQ+Q Sbjct: 123 RDLLKTAMDLGGDALATGHYIESR-------KRGNHRSLHRPFDLDRDQSYFLYGTTQKQ 175 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 + LRFPL + K+ R++A + GL IA K DSQDICFV G+Y D+V+R+ G+ Sbjct: 176 VDFLRFPLASLTKDETREIAAKHGLAIASKPDSQDICFVPTGRYSDLVRRLRPEAGDPGE 235 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 IVH++G++LG H GIINYT+GQRRGLGVA GEPL+VV LD + RV+VGPRE+L + Sbjct: 236 IVHIDGRVLGEHEGIINYTVGQRRGLGVAAGEPLYVVKLDPATRRVVVGPREALATRAVR 295 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQ 363 LRE+NWL + E + + FVK+RS++ P P + + +G + V+ +E GVA GQ Sbjct: 296 LREVNWLAEESAEVYATETREIFVKLRSTRPPSPARLAADGEGGWMVELLAAEYGVAKGQ 355 Query: 364 ACVFYTSDSNEARVLGGGIISGS 386 ACVFY ++ A VLGGGII GS Sbjct: 356 ACVFYGAEGAGAEVLGGGIIDGS 378 >gi|209884347|ref|YP_002288204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oligotropha carboxidovorans OM5] gi|229486419|sp|B6JCC3|MNMA_OLICO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|209872543|gb|ACI92339.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oligotropha carboxidovorans OM5] Length = 393 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 217/383 (56%), Positives = 272/383 (71%), Gaps = 5/383 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL+ P RVVVAMSGGVDSS AALLK +GYDVIG+TLQLY+ +A+ RKG+CC Sbjct: 2 LNSLDLEGPPSSTRVVVAMSGGVDSSTTAALLKAEGYDVIGITLQLYDHGEATHRKGACC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V + I + HYV DYE RFR +VI FA SYA GETP+PC++CNR+VKF D Sbjct: 62 AGQDIHDARDVAERIGIPHYVLDYESRFRESVIDRFAESYALGETPVPCIECNRSVKFRD 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGA LATGHY+ SR DG R M D +RDQSYFLFATTQ QL L Sbjct: 122 LLTTAQELGAQALATGHYVASRRQ--PDGSR--AMVCAADADRDQSYFLFATTQDQLNHL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K R+LAR L +A+K DSQDICFV G+Y DV++R+ L GDIV L Sbjct: 178 RFPLGDMTKAQTRELARRFDLPVAEKHDSQDICFVPTGRYTDVIERMRPNAMLPGDIVDL 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 G++LG H GI N+T+GQRRG+G+A PL+VV LD S +VIVGPR +L + I LR+I Sbjct: 238 RGRVLGHHQGIANFTVGQRRGIGIAASMPLYVVALDAASRQVIVGPRAALRKNLITLRDI 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GDG F+D +G ++K+RS++ P P ++ N D V+ E GV+ GQACVFY Sbjct: 298 NWIGDGTFDDVAREGRDLYIKVRSTRPPQPAHLRMNGDHCEVELFAGEEGVSPGQACVFY 357 Query: 369 TSDSNEARVLGGGIIS-GSKRSD 390 + + +ARVLGGG I+ S SD Sbjct: 358 DAPTGQARVLGGGFITHASNNSD 380 >gi|170743223|ref|YP_001771878.1| tRNA-specific 2-thiouridylase MnmA [Methylobacterium sp. 4-46] gi|205816883|sp|B0UIW7|MNMA_METS4 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|168197497|gb|ACA19444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacterium sp. 4-46] Length = 382 Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust. Identities = 215/377 (57%), Positives = 268/377 (71%), Gaps = 8/377 (2%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLDL K P+D RVVVAMSGGVDSSVVA LL+R GYDV+G+TLQLY+ A+ R+G+CC Sbjct: 1 MNSLDLPKAPQDTRVVVAMSGGVDSSVVAGLLRRQGYDVVGITLQLYDHGAATHRRGACC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DARR +T+ + HYV DYE+RFR AVI FA SY GETP+PCV+CNR++KF D Sbjct: 61 AGQDIHDARRAAETLGIPHYVLDYEDRFREAVIDRFAESYIHGETPIPCVECNRSIKFRD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ LGAD LATGHY+ SR G R + R +D RDQSYFL+ATT +QL L Sbjct: 121 LLATALDLGADALATGHYVASRARPGGG----RALYRALDPARDQSYFLYATTPEQLDVL 176 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG++ K+ R LARE GL +ADK DSQDICFV QG+Y DV+ R+ A G+IVHL Sbjct: 177 RFPLGELPKDETRRLAREFGLAVADKPDSQDICFVPQGRYQDVIARLRPDAARPGEIVHL 236 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G+ LGRH GII +T+GQRRGLG+A GEPL+VV LD ++RV+VGPRE+L I + E Sbjct: 237 DGRTLGRHEGIIGFTVGQRRGLGLATGEPLYVVRLDPETARVVVGPREALATSVIRIAET 296 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND--DGVYVDFEKSEVGVASGQACV 366 NWLGD D +DG V++RS+++P P ++ N V E E GV+ GQAC Sbjct: 297 NWLGDEPLAD--LDGMPVAVRVRSTREPRPAALRWNRALACAEVVLETPEDGVSPGQACA 354 Query: 367 FYTSDSNEARVLGGGII 383 Y D ARVLGGG I Sbjct: 355 IYADDGPRARVLGGGTI 371 >gi|296446642|ref|ZP_06888583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylosinus trichosporium OB3b] gi|296255870|gb|EFH02956.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylosinus trichosporium OB3b] Length = 411 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 220/403 (54%), Positives = 276/403 (68%), Gaps = 12/403 (2%) Query: 3 VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62 V + T LNSL L K +D RVVVAMSGGVDSSVVAALL GYDV+GVTLQLY+ +A Sbjct: 8 VPDETELNSLGLPKPAQDTRVVVAMSGGVDSSVVAALLAEQGYDVVGVTLQLYDHGEAVH 67 Query: 63 RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122 RKGSCCAGQD++DARRV + + HYV D+E RFR VI FA SYA+GETP+PCV CN+ Sbjct: 68 RKGSCCAGQDIHDARRVAARLGIPHYVLDFETRFRETVIDTFAQSYASGETPVPCVACNQ 127 Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 VKF DL + LGAD LATGHYI SR G+ R + R MD RDQSYFLFATT+ Sbjct: 128 FVKFVDLFETAKDLGADALATGHYIASR-----PGRGGRGLYRAMDAARDQSYFLFATTR 182 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 QL LRFPLG+ K VR+LAR LD+A+K DSQDICFV G Y D+V+R++ G A+ Sbjct: 183 PQLDMLRFPLGEYAKPDVRELARRFDLDVAEKPDSQDICFVPSGHYSDIVERLSPGAAVP 242 Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMG------EPLFVVYLDKNSSRVIVGPRE 296 G+IVH++G++LGRH G+I+YTIGQRRGLG+ +PL+VV LD +RVIVGPRE Sbjct: 243 GEIVHVDGRVLGRHAGVIHYTIGQRRGLGLGAAVAGRASDPLYVVRLDAARARVIVGPRE 302 Query: 297 SLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKS 355 +LE + LR++NW+G+G D G + ++RS++ P P + G V FE Sbjct: 303 ALETRSVRLRDVNWIGEGELADLPEGGLEIEARVRSTRPPTPARLLPLAGGGAQVLFETG 362 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLS 398 E GV+ GQACVFY D ARVLGGG I+ ++ + E +L+ Sbjct: 363 EFGVSPGQACVFYDRDGARARVLGGGFIAAAEHAAEPTEPILA 405 >gi|323137322|ref|ZP_08072400.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylocystis sp. ATCC 49242] gi|322397309|gb|EFX99832.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylocystis sp. ATCC 49242] Length = 412 Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust. Identities = 214/383 (55%), Positives = 267/383 (69%), Gaps = 11/383 (2%) Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69 + L L +P D RVVVAMSGGVDSSVVAALLK GYDV+GVTLQLY+ +A+ RKG+CCA Sbjct: 9 DPLILPASPGDTRVVVAMSGGVDSSVVAALLKEQGYDVVGVTLQLYDHGEATHRKGACCA 68 Query: 70 GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 GQD+ DAR V + + H+V DYE RFR VI FA+SYA+GETP+PCV CN+ +KF+DL Sbjct: 69 GQDIQDARAVAARLGIPHFVLDYERRFREKVIDEFAASYASGETPVPCVACNQFIKFADL 128 Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 + LGA VLATGHYI SR DDG+ R + R D RDQSYFLFATT++QL LR Sbjct: 129 FETAKDLGAHVLATGHYISSR----DDGEGGRALYRAKDASRDQSYFLFATTREQLRMLR 184 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 FPLGD K VR++AR GL++ADK DSQDICFV G+Y DVV+R+ + GDIVH++ Sbjct: 185 FPLGDYTKAEVREMARNYGLEVADKPDSQDICFVPSGRYTDVVERLAPDAVVPGDIVHVD 244 Query: 250 GQILGRHNGIINYTIGQRRGLGVAM------GEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 G++LGRH G+++YTIGQRRGLG+ EPLFVV LD + V+VGPRE+LE + Sbjct: 245 GRVLGRHAGVVHYTIGQRRGLGLGASVAGRDAEPLFVVRLDAARAEVVVGPREALETRAV 304 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASG 362 LR++NW+G G F D G ++RS++ PVP + R D V F SE GV+ G Sbjct: 305 ALRDVNWIGSGEFNDMPPQGIDIMARVRSTRPPVPARLIAREDSSATVVFAASEFGVSPG 364 Query: 363 QACVFYTSDSNEARVLGGGIISG 385 QACVFY + ARVLGGG I+ Sbjct: 365 QACVFYDRADDAARVLGGGFIAA 387 >gi|220925891|ref|YP_002501193.1| tRNA-specific 2-thiouridylase MnmA [Methylobacterium nodulans ORS 2060] gi|254811453|sp|B8IU32|MNMA_METNO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|219950498|gb|ACL60890.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacterium nodulans ORS 2060] Length = 382 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 212/377 (56%), Positives = 266/377 (70%), Gaps = 8/377 (2%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLDL K P+D RVVVAMSGGVDSSVVA LLKR GYDV+G+TLQLY+ A+ R+G+CC Sbjct: 1 MNSLDLPKAPQDTRVVVAMSGGVDSSVVAGLLKRQGYDVVGITLQLYDHGAATHRRGACC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DARR +T+ + HYV DYE+RFR AVI FA SY GETP+PCV+CNR++KF D Sbjct: 61 AGQDIHDARRAAETLGIPHYVLDYEDRFREAVIDRFADSYIHGETPIPCVECNRSIKFRD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ LGAD LATGHY+ SR G R + R +D RDQSYFL+ATT +QL L Sbjct: 121 LLATALDLGADALATGHYVASRPRPGGS----RALYRALDPARDQSYFLYATTAEQLDVL 176 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG++ K+ R LARE GL +ADK DSQDICFV QG+Y DV+ R+ G+IVHL Sbjct: 177 RFPLGELPKDETRRLAREFGLSVADKPDSQDICFVPQGRYQDVIARLRPDSVRPGEIVHL 236 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G+ LGRH+GII +T+GQRRGL +A GEPL+VV LD ++RV+VGPRE+L I L E Sbjct: 237 DGRTLGRHDGIIGFTVGQRRGLKLATGEPLYVVRLDPETARVVVGPREALATSVIRLAET 296 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366 NWLGD + +DG V++RS+++P P ++ N V E GV+ GQAC Sbjct: 297 NWLGDEPLTE--LDGMPVAVRVRSTREPRPATLRWNRAASCAEVMLATPEDGVSPGQACA 354 Query: 367 FYTSDSNEARVLGGGII 383 Y + ARVLGGG I Sbjct: 355 IYADEGPRARVLGGGTI 371 >gi|170751444|ref|YP_001757704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacterium radiotolerans JCM 2831] gi|205816882|sp|B1LV15|MNMA_METRJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|170657966|gb|ACB27021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacterium radiotolerans JCM 2831] Length = 384 Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust. Identities = 213/385 (55%), Positives = 273/385 (70%), Gaps = 10/385 (2%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +N+LDL K P + RVVVAMSGGVDSSVVA LLKR G+DV+GVTLQLY+ AS RKG+CC Sbjct: 1 MNALDLPKAPHETRVVVAMSGGVDSSVVAGLLKRQGFDVVGVTLQLYDHGAASHRKGACC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR + + + HYV DYE+RFR+ VI FA SY AGETP+PCV+CNRTVKF D Sbjct: 61 AGQDIHDARAAAEHLGIPHYVLDYEDRFRDEVIEKFAESYLAGETPIPCVECNRTVKFRD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL + R L AD LATGHY+ SR G R + R +D RDQSYFL+ATT +QL L Sbjct: 121 LLGLARDLDADALATGHYVASRALPGGG----RALHRALDPARDQSYFLYATTAEQLDFL 176 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG+M+K R LA+E+GL +A+K DSQDICFV QG+Y DV+ R+ A G+IV L Sbjct: 177 RFPLGEMEKTETRALAKELGLSLAEKPDSQDICFVPQGRYSDVIARLRPDAARPGEIVDL 236 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G +LGRH+GI++YT+GQR+GLG++ EPL+VV L+ +++RV+VGPR +L RI L ++ Sbjct: 237 DGHVLGRHDGIVHYTVGQRKGLGLSGPEPLYVVRLEPDAARVVVGPRTALATTRIRLSDL 296 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVF 367 NWLG+G E V V++RS++ P P + DG V V + E GV+ GQAC Sbjct: 297 NWLGEGPAE--AVRDLPVAVRVRSTRPPRPATLTVGPDGAVEVVLAEPEDGVSPGQACAI 354 Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392 Y D ARVLGGG I +R DA+ Sbjct: 355 YADDGPRARVLGGGTI---RRVDAL 376 >gi|158425974|ref|YP_001527266.1| tRNA-specific 2-thiouridylase MnmA [Azorhizobium caulinodans ORS 571] gi|172047846|sp|A8HVS0|MNMA_AZOC5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|158332863|dbj|BAF90348.1| TRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Azorhizobium caulinodans ORS 571] Length = 390 Score = 424 bits (1091), Expect = e-117, Method: Compositional matrix adjust. Identities = 216/378 (57%), Positives = 265/378 (70%), Gaps = 5/378 (1%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72 D+ +P RVVVAMSGGVDSSVVA LL R G+DV+GVTLQLY+ +A++RKG+CCAGQD Sbjct: 7 DIGTDPASTRVVVAMSGGVDSSVVAGLLARAGFDVVGVTLQLYDQGEAARRKGACCAGQD 66 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 +YDAR V D + + HYV DYE RFR VI FA SYAAG TP+PCVDCNRTVKF DLL+ Sbjct: 67 IYDARDVADRLGIPHYVLDYESRFREEVIERFADSYAAGFTPIPCVDCNRTVKFRDLLAT 126 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 LGA VLATGHY+ SR DG RR + R + RDQSYFL+ATTQ Q LRFPL Sbjct: 127 AEDLGASVLATGHYVASRAL--PDG--RRGLFRAAEENRDQSYFLYATTQAQATKLRFPL 182 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G M+K VR LA E+GL +ADK DSQDICFV G Y +VV+R+ GDIVHL+G++ Sbjct: 183 GGMRKSDVRALAAELGLPVADKPDSQDICFVPGGDYAEVVERLRPEAGEAGDIVHLDGRV 242 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 LGRH G+++YTIGQR+GLG++ EPL+VV +D V VGPRE+L V I L +INWLG Sbjct: 243 LGRHRGVMHYTIGQRKGLGISTPEPLYVVAIDAARREVRVGPREALAVRSIGLTDINWLG 302 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371 D DA +VK+RS++ P P + R+ DG V+ E GVA GQACVFY + Sbjct: 303 DVPLLDACAAEQDIYVKVRSTRPPTPARLLRDADGAPTVELLAGEEGVAPGQACVFYDAA 362 Query: 372 SNEARVLGGGIISGSKRS 389 S AR+LGGG I ++R+ Sbjct: 363 SGAARLLGGGTIVRAERA 380 >gi|240140914|ref|YP_002965394.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacterium extorquens AM1] gi|254563424|ref|YP_003070519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacterium extorquens DM4] gi|240010891|gb|ACS42117.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacterium extorquens AM1] gi|254270702|emb|CAX26706.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacterium extorquens DM4] Length = 410 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 210/377 (55%), Positives = 271/377 (71%), Gaps = 8/377 (2%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLDL K P + RVVVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+ A+ RKG+CC Sbjct: 26 MNSLDLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRKGACC 85 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AG+D++DAR V +T+ + HYV DYE+RFR +VI FA SY +GETP+PCV+CNR+VKF D Sbjct: 86 AGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFAESYLSGETPIPCVECNRSVKFRD 145 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL + R+LGA+ LATGHY+ SR +G R + R +D RDQSYFL+ATT +QL L Sbjct: 146 LLGLARELGAEALATGHYVASRAR--PEGG--RALYRALDPARDQSYFLYATTPEQLAYL 201 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG+ K+ R LARE+GL +ADK+DSQDICFV QG Y DV+ ++ G+IV L Sbjct: 202 RFPLGERPKDETRALARELGLAVADKADSQDICFVPQGGYADVIAKLRPEATRPGEIVDL 261 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G+ LG H GII+YT+GQRRGL ++ GEPL+VV L+ ++RV+VGPR +L RI L ++ Sbjct: 262 DGRRLGEHEGIIHYTVGQRRGLKLSAGEPLYVVRLEPETARVVVGPRAALATRRIRLTDL 321 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACV 366 NWLGDG ED V V++RS+++P P + N + V+ E GV+ GQACV Sbjct: 322 NWLGDGAPEDIVER--PVAVRVRSTREPRPARLSWNAAEACAEVELLVPEDGVSPGQACV 379 Query: 367 FYTSDSNEARVLGGGII 383 Y D A+VLGGG I Sbjct: 380 IYADDDPRAQVLGGGTI 396 >gi|83859630|ref|ZP_00953150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oceanicaulis alexandrii HTCC2633] gi|83851989|gb|EAP89843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oceanicaulis alexandrii HTCC2633] Length = 433 Score = 422 bits (1084), Expect = e-116, Method: Compositional matrix adjust. Identities = 208/375 (55%), Positives = 270/375 (72%), Gaps = 8/375 (2%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L+L P D RVV AMSGGVDSSVVAA+L R GY V+G+TLQLY+ +A RKG+CCAGQ Sbjct: 66 LNLGGEPSDHRVVAAMSGGVDSSVVAAVLHRAGYQVVGMTLQLYDHGEAVHRKGACCAGQ 125 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D++DARRV + + +HYV DYE RFR AVI FA +Y AG TP+PCV CN++VKF+DLL+ Sbjct: 126 DIHDARRVAEAMGFAHYVLDYETRFREAVIEDFADTYLAGFTPIPCVRCNQSVKFADLLA 185 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 ++QLGAD L TGHYI+ R G+ + RR D +DQSYFLFATT++QL LRFP Sbjct: 186 TSKQLGADCLVTGHYIQ-RTMSGNRPELRRAA----DAGKDQSYFLFATTEEQLDYLRFP 240 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG + KE R+LA +GL +A K DSQDICFV G Y VV+++ G + G+IVHL+G+ Sbjct: 241 LGHLNKEQTRELAAALGLIVAAKPDSQDICFVPDGDYAAVVEKVRPGASRPGEIVHLDGR 300 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 ++G H G++ YT+GQRRGLG+A GEPL+VV LD +++VIVGPRE+L+V RI L ++NW+ Sbjct: 301 VMGEHEGVLRYTVGQRRGLGIATGEPLYVVRLDAENAQVIVGPREALQVRRITLTDVNWI 360 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 GDG +A DG +K+RS++ P P ++ DGV+V E E GVA GQACVFY S Sbjct: 361 GDGDLSEA--DGLTVGIKVRSTRPPKPAILEVTGDGVFVLLETGEEGVAPGQACVFY-SH 417 Query: 372 SNEARVLGGGIISGS 386 + RVLGGG I + Sbjct: 418 PDHDRVLGGGWIRAT 432 >gi|218532352|ref|YP_002423168.1| tRNA-specific 2-thiouridylase MnmA [Methylobacterium chloromethanicum CM4] gi|218524655|gb|ACK85240.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacterium chloromethanicum CM4] Length = 410 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 210/377 (55%), Positives = 271/377 (71%), Gaps = 8/377 (2%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLDL K P + RVVVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+ A+ RKG+CC Sbjct: 26 MNSLDLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRKGACC 85 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AG+D++DAR V +T+ + HYV DYE+RFR +VI FA SY +GETP+PCV+CNR+VKF D Sbjct: 86 AGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFADSYLSGETPIPCVECNRSVKFRD 145 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL + R+LGA+ LATGHY+ SR +G R + R +D RDQSYFL+ATT +QL L Sbjct: 146 LLGLARELGAEALATGHYVASRAR--PEGG--RALYRALDPARDQSYFLYATTPEQLAYL 201 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG+ K+ R LARE+GL +ADK+DSQDICFV QG Y DV+ ++ G+IV L Sbjct: 202 RFPLGERPKDETRALARELGLAVADKADSQDICFVPQGGYADVIAKLRPEATRPGEIVDL 261 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G+ LG H GII+YT+GQRRGL ++ GEPL+VV L+ ++RV+VGPR +L RI L ++ Sbjct: 262 DGRRLGEHEGIIHYTVGQRRGLKLSAGEPLYVVRLEPETARVVVGPRAALATRRIRLTDL 321 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACV 366 NWLGDG ED V V++RS+++P P + N + V+ E GV+ GQACV Sbjct: 322 NWLGDGTPEDIVER--PVAVRVRSTREPRPGRLSWNAAEACAEVELLVPEDGVSPGQACV 379 Query: 367 FYTSDSNEARVLGGGII 383 Y D A+VLGGG I Sbjct: 380 IYADDDPRAQVLGGGTI 396 >gi|154244361|ref|YP_001415319.1| tRNA-specific 2-thiouridylase MnmA [Xanthobacter autotrophicus Py2] gi|154158446|gb|ABS65662.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xanthobacter autotrophicus Py2] Length = 436 Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust. Identities = 213/383 (55%), Positives = 263/383 (68%), Gaps = 5/383 (1%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 T L LD D +P RVVVAMSGGVDSSVVA L R GYDV+GVTLQLY+ +A+ R+G+ Sbjct: 49 TDLPLLDTDGDPASTRVVVAMSGGVDSSVVAGLYARAGYDVVGVTLQLYDHGEAAHRRGA 108 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 CCAGQD+YDA V T+ + HYV DYE RF+ VI FA+SYA+G TP+PCVDCNRTVKF Sbjct: 109 CCAGQDIYDASEVARTLGIPHYVLDYESRFKEEVIDRFAASYASGVTPIPCVDCNRTVKF 168 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 DLL+ +LGA LATGHY+ SR DG RR + R + RDQSYFL+ATT QL Sbjct: 169 RDLLATAEELGARYLATGHYVASRAL--PDG--RRGLYRAAEEARDQSYFLYATTAAQLE 224 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 LRFPLG+M+K VR LA E GL +ADK DSQDICFV G Y VV+R+ A GDIV Sbjct: 225 RLRFPLGEMRKADVRALAAEFGLPVADKPDSQDICFVPGGDYAQVVQRLRPEAAEPGDIV 284 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 HL+G++LGRH G+++YTIGQR+GLG+A EPL+V+ +D +V VGPR +L V I + Sbjct: 285 HLDGRVLGRHRGVMHYTIGQRKGLGIATPEPLYVIAIDAARQQVRVGPRAALSVSAITID 344 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQAC 365 ++NWLGD F DA+ +VK+RS++ PVP + R DG V E GVA GQAC Sbjct: 345 DVNWLGDIPFTDALARQADVYVKVRSTRPPVPAHLARATDGTPAVHLAVGEEGVAPGQAC 404 Query: 366 VFYTSDSNEARVLGGGIISGSKR 388 V Y AR+LGGG I ++R Sbjct: 405 VLYDDAGAAARLLGGGTIMRAER 427 >gi|163853494|ref|YP_001641537.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacterium extorquens PA1] gi|163665099|gb|ABY32466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacterium extorquens PA1] Length = 410 Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust. Identities = 209/377 (55%), Positives = 270/377 (71%), Gaps = 8/377 (2%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLDL K P + RVVVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+ A+ RKG+CC Sbjct: 26 MNSLDLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRKGACC 85 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AG+D++DAR V +T+ + HYV DYE+RFR +VI FA SY +GETP+PCV+CNR+VKF D Sbjct: 86 AGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFAESYLSGETPIPCVECNRSVKFRD 145 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL + R LGA+ LATGHY+ SR +G R + R +D RDQSYFL+ATT +QL L Sbjct: 146 LLGLARDLGAEALATGHYVASRAR--PEGG--RALYRALDPARDQSYFLYATTPEQLAYL 201 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG+ K+ R LARE+GL +ADK+DSQDICFV QG Y DV+ ++ G+IV L Sbjct: 202 RFPLGERPKDETRALARELGLAVADKADSQDICFVPQGGYADVIAKLRPEATRPGEIVDL 261 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G+ LG H GII+YT+GQRRGL ++ GEPL+VV L+ ++RV+VGPR +L RI L ++ Sbjct: 262 DGRRLGEHEGIIHYTVGQRRGLKLSAGEPLYVVRLEPETARVVVGPRAALATRRIRLTDL 321 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACV 366 NWLGDG ED + V++RS+++P P + N + V+ E GV+ GQACV Sbjct: 322 NWLGDGAPED--IAERPVAVRVRSTREPRPARLSWNAAEACAEVELLVPEDGVSPGQACV 379 Query: 367 FYTSDSNEARVLGGGII 383 Y D A+VLGGG I Sbjct: 380 IYADDDPRAQVLGGGTI 396 >gi|23012016|ref|ZP_00052207.1| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Magnetospirillum magnetotacticum MS-1] Length = 403 Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust. Identities = 207/377 (54%), Positives = 271/377 (71%), Gaps = 8/377 (2%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLDL K P + RVVVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+ A+ RKG+CC Sbjct: 19 MNSLDLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRKGACC 78 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AG+D++DAR V +T+ + HYV DYE++FR +VI FA SY +GETP+PCV+CNR+VKF D Sbjct: 79 AGRDIHDARAVAETLGIPHYVLDYEDKFRESVIDRFAESYLSGETPIPCVECNRSVKFRD 138 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL++ R LGA+ LATGHY+ SR + + G R + R +D RDQSYFL+ATT +QL L Sbjct: 139 LLALARDLGAEALATGHYVASR-PLAEGG---RGLFRALDPARDQSYFLYATTPEQLAFL 194 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG+ K+ R LARE+GL +ADK+DSQDICFV QG Y DV+ ++ A G IV L Sbjct: 195 RFPLGERPKDETRALARELGLAVADKADSQDICFVPQGGYADVIAKLRPEAARPGAIVDL 254 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G+ LG H GII+YT+GQRRGL +++GEPL+VV L+ ++RV+VGPR +L RI L ++ Sbjct: 255 DGRHLGEHEGIIHYTVGQRRGLKLSVGEPLYVVRLEPETARVVVGPRAALATRRIRLTDL 314 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFE--KSEVGVASGQACV 366 NWLG G E + V++RS+++P P + N + + E E GV+ GQACV Sbjct: 315 NWLGGGTPES--LAELPVAVRVRSTREPRPARLSWNAEAACAEVELVAPEDGVSPGQACV 372 Query: 367 FYTSDSNEARVLGGGII 383 Y D A+VLGGG I Sbjct: 373 IYADDGPRAQVLGGGTI 389 >gi|205829088|sp|A7ICB9|MNMA_XANP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 389 Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust. Identities = 213/383 (55%), Positives = 263/383 (68%), Gaps = 5/383 (1%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 T L LD D +P RVVVAMSGGVDSSVVA L R GYDV+GVTLQLY+ +A+ R+G+ Sbjct: 2 TDLPLLDTDGDPASTRVVVAMSGGVDSSVVAGLYARAGYDVVGVTLQLYDHGEAAHRRGA 61 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 CCAGQD+YDA V T+ + HYV DYE RF+ VI FA+SYA+G TP+PCVDCNRTVKF Sbjct: 62 CCAGQDIYDASEVARTLGIPHYVLDYESRFKEEVIDRFAASYASGVTPIPCVDCNRTVKF 121 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 DLL+ +LGA LATGHY+ SR DG RR + R + RDQSYFL+ATT QL Sbjct: 122 RDLLATAEELGARYLATGHYVASRAL--PDG--RRGLYRAAEEARDQSYFLYATTAAQLE 177 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 LRFPLG+M+K VR LA E GL +ADK DSQDICFV G Y VV+R+ A GDIV Sbjct: 178 RLRFPLGEMRKADVRALAAEFGLPVADKPDSQDICFVPGGDYAQVVQRLRPEAAEPGDIV 237 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 HL+G++LGRH G+++YTIGQR+GLG+A EPL+V+ +D +V VGPR +L V I + Sbjct: 238 HLDGRVLGRHRGVMHYTIGQRKGLGIATPEPLYVIAIDAARQQVRVGPRAALSVSAITID 297 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQAC 365 ++NWLGD F DA+ +VK+RS++ PVP + R DG V E GVA GQAC Sbjct: 298 DVNWLGDIPFTDALARQADVYVKVRSTRPPVPAHLARATDGTPAVHLAVGEEGVAPGQAC 357 Query: 366 VFYTSDSNEARVLGGGIISGSKR 388 V Y AR+LGGG I ++R Sbjct: 358 VLYDDAGAAARLLGGGTIMRAER 380 >gi|205822340|sp|A9W8W7|MNMA_METEP RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 385 Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust. Identities = 209/377 (55%), Positives = 270/377 (71%), Gaps = 8/377 (2%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLDL K P + RVVVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+ A+ RKG+CC Sbjct: 1 MNSLDLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRKGACC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AG+D++DAR V +T+ + HYV DYE+RFR +VI FA SY +GETP+PCV+CNR+VKF D Sbjct: 61 AGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFAESYLSGETPIPCVECNRSVKFRD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL + R LGA+ LATGHY+ SR +G R + R +D RDQSYFL+ATT +QL L Sbjct: 121 LLGLARDLGAEALATGHYVASR--ARPEGG--RALYRALDPARDQSYFLYATTPEQLAYL 176 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG+ K+ R LARE+GL +ADK+DSQDICFV QG Y DV+ ++ G+IV L Sbjct: 177 RFPLGERPKDETRALARELGLAVADKADSQDICFVPQGGYADVIAKLRPEATRPGEIVDL 236 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G+ LG H GII+YT+GQRRGL ++ GEPL+VV L+ ++RV+VGPR +L RI L ++ Sbjct: 237 DGRRLGEHEGIIHYTVGQRRGLKLSAGEPLYVVRLEPETARVVVGPRAALATRRIRLTDL 296 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACV 366 NWLGDG ED + V++RS+++P P + N + V+ E GV+ GQACV Sbjct: 297 NWLGDGAPED--IAERPVAVRVRSTREPRPARLSWNAAEACAEVELLVPEDGVSPGQACV 354 Query: 367 FYTSDSNEARVLGGGII 383 Y D A+VLGGG I Sbjct: 355 IYADDDPRAQVLGGGTI 371 >gi|114798727|ref|YP_759370.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Hyphomonas neptunium ATCC 15444] gi|123323559|sp|Q0C4H3|MNMA_HYPNA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|114738901|gb|ABI77026.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Hyphomonas neptunium ATCC 15444] Length = 394 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 206/379 (54%), Positives = 263/379 (69%), Gaps = 6/379 (1%) Query: 6 ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65 A R+NSL K P + RVV AMSGGVDSSVVAA+LK +GYDVIG+TLQLY+ A ++KG Sbjct: 10 AGRVNSLGFAKPPHETRVVAAMSGGVDSSVVAAMLKAEGYDVIGITLQLYDHGAAIEKKG 69 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 +CCAGQD++DAR V D I + HYV DYE RFR V+ FA +Y +G TP+PC+ CN+TVK Sbjct: 70 ACCAGQDIHDARNVSDAIGIPHYVLDYESRFREQVMEDFADTYLSGSTPIPCIRCNQTVK 129 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F+DLL+ ++LGAD LATGHYIR DG + R D RDQSYFLFATT+ QL Sbjct: 130 FADLLATAKELGADCLATGHYIRR-----TDGPEGPELHRAQDASRDQSYFLFATTRAQL 184 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 LRFPLG + K VR+LA + L +A K DSQDICFV G Y VV+++ G G+I Sbjct: 185 DFLRFPLGSLPKSEVRELAEKFALQVAAKPDSQDICFVPDGSYAKVVEKLRPGSGRGGEI 244 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 VHL+G++LG+H G+I+YTIGQRRGLGVA G+PLFVV +D + RVIVGPRE+L + L Sbjct: 245 VHLDGRVLGKHEGVIHYTIGQRRGLGVATGDPLFVVKIDAPARRVIVGPREALMTRGLLL 304 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 E+NWLG G E+A G + +++RS++ PVP + D V F+ E GVA GQA Sbjct: 305 EELNWLGQGSLEEAATHGARVLIRVRSTRPPVPGRLGYEDGVPAVFFDAPEEGVARGQAA 364 Query: 366 VFYTSDSNEARVLGGGIIS 384 V Y + + R+LGGG I+ Sbjct: 365 VLYDLEGS-TRILGGGFIA 382 >gi|298292472|ref|YP_003694411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Starkeya novella DSM 506] gi|296928983|gb|ADH89792.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Starkeya novella DSM 506] Length = 395 Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust. Identities = 206/358 (57%), Positives = 256/358 (71%), Gaps = 6/358 (1%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQ 71 D ++P RVVVAMSGGVDSSVVAAL + GYDV+GVTLQLY+ +A R G+CCAGQ Sbjct: 6 DTSRSPSHTRVVVAMSGGVDSSVVAALYAKAGYDVVGVTLQLYDHGEAMHHRPGACCAGQ 65 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+YDAR V + + + HYV DYE RFR+AVI FA +YAAGETP+PCVDCNRTVKF DLL Sbjct: 66 DIYDARTVAEKLGIPHYVLDYESRFRHAVIERFADAYAAGETPIPCVDCNRTVKFRDLLE 125 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 R LGAD+LATGHY+ SR G RR + RP+D RDQSYFL+ATTQ+Q+ LRFP Sbjct: 126 TARDLGADILATGHYVTSRALEGG----RRALFRPLDESRDQSYFLYATTQEQIDMLRFP 181 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG+ K VR LA E GL +ADK DSQDICFV G Y +V+++ A G+IVHL+G+ Sbjct: 182 LGETTKPEVRALAEEFGLKVADKPDSQDICFVPNGHYTAIVEKLRPEAAEPGEIVHLDGR 241 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 +LG+H G++ YTIGQR+GLG+A EPL+VV +D RV+VGPR +L V I + E+NWL Sbjct: 242 VLGQHAGVMRYTIGQRKGLGIAASEPLYVVGIDAGRRRVLVGPRAALGVSAIRIDEVNWL 301 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368 GD + A G +VK+RS++ PVP + R +D GV V +E GVA GQACVFY Sbjct: 302 GDETLDAAAEAGRDLYVKVRSARAPVPGHLARASDGGVEVHLAGAEEGVAPGQACVFY 359 >gi|312116059|ref|YP_004013655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodomicrobium vannielii ATCC 17100] gi|311221188|gb|ADP72556.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodomicrobium vannielii ATCC 17100] Length = 395 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 206/375 (54%), Positives = 260/375 (69%), Gaps = 9/375 (2%) Query: 11 SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70 +L L +P R+VVAMSGGVDSS+ AAL+KR GYD +G+TLQLY+ +A RKG+CCAG Sbjct: 23 ALGLTGSPSSHRIVVAMSGGVDSSLTAALVKRAGYDTVGITLQLYDHGEAMARKGACCAG 82 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 QD+ DAR V D + V HYV DYE+RFR +VI FA SY AGETP+PCV CN+TVKF DLL Sbjct: 83 QDIMDARGVADRLGVPHYVLDYEDRFRQSVIDDFADSYLAGETPVPCVRCNQTVKFRDLL 142 Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 R+LGA L TGHY+RS G R M + D +RDQSYFLFATTQ QL LRF Sbjct: 143 GAARELGASALVTGHYVRSV-----PGPRGIEMHQAADPDRDQSYFLFATTQAQLDFLRF 197 Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250 PLG M K R++A + L +A K DSQDICFV G Y +++++ G+IVH +G Sbjct: 198 PLGGMTKTETREMAAALHLPVASKPDSQDICFVPSGDYASIIRKLRPESGEPGEIVHADG 257 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 ++LG+H GIIN+T+GQR+GLG+A GEPLFV+ ++ ++ RVIVGPRE L R+ LR++NW Sbjct: 258 RVLGQHPGIINFTVGQRKGLGIATGEPLFVIRIEPSARRVIVGPREMLRTARLSLRDVNW 317 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDP--VPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 +G G ++AV G FVK+RS+Q P +F +R GV VD E GVA+GQACVFY Sbjct: 318 IGGGSLDEAVAGGRSLFVKVRSTQPPREARLFAERG--GVGVDLAGGEFGVAAGQACVFY 375 Query: 369 TSDSNEARVLGGGII 383 ARVLGGG I Sbjct: 376 DRAGGAARVLGGGFI 390 >gi|188583764|ref|YP_001927209.1| tRNA-specific 2-thiouridylase MnmA [Methylobacterium populi BJ001] gi|179347262|gb|ACB82674.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacterium populi BJ001] Length = 395 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 208/377 (55%), Positives = 271/377 (71%), Gaps = 8/377 (2%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLDL K P + RVVVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+ A+ RKG+CC Sbjct: 11 MNSLDLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRKGACC 70 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AG+D++DAR V +T+ + HYV DYE+RFR +VI FA SY +GETP+PCV+CNR+VKF D Sbjct: 71 AGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFAESYLSGETPIPCVECNRSVKFRD 130 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL + R LGA+ LATGHY+ SR +G R + R +D RDQSYFL+ATT +QL L Sbjct: 131 LLGMARDLGAEALATGHYVASR--AQPEGG--RALYRALDPARDQSYFLYATTPEQLAFL 186 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG+ K+ R LARE+GL +ADK+DSQDICFV QG Y DV+ ++ A G+IV L Sbjct: 187 RFPLGERPKDETRALARELGLAVADKADSQDICFVPQGGYADVIAKLRPEAARPGEIVDL 246 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G+ LG H GII+YT+GQRRGL +++GEPL+VV L+ ++RV+VGPR +L RI L ++ Sbjct: 247 DGRRLGEHEGIIHYTVGQRRGLKLSVGEPLYVVRLEPETARVVVGPRAALATRRIRLTDL 306 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACV 366 NWLG D + D V++RS+++P P + N + + V+ E GV+ GQACV Sbjct: 307 NWLGS-RAPDGLAD-LPVAVRVRSTREPRPARLSWNAAEACLEVELVVPEDGVSPGQACV 364 Query: 367 FYTSDSNEARVLGGGII 383 Y D A+VLGGG I Sbjct: 365 IYADDGPRAQVLGGGTI 381 >gi|205822346|sp|B1ZGZ6|MNMA_METPB RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 385 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 208/377 (55%), Positives = 271/377 (71%), Gaps = 8/377 (2%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLDL K P + RVVVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+ A+ RKG+CC Sbjct: 1 MNSLDLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRKGACC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AG+D++DAR V +T+ + HYV DYE+RFR +VI FA SY +GETP+PCV+CNR+VKF D Sbjct: 61 AGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFAESYLSGETPIPCVECNRSVKFRD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL + R LGA+ LATGHY+ SR +G R + R +D RDQSYFL+ATT +QL L Sbjct: 121 LLGMARDLGAEALATGHYVASR--AQPEGG--RALYRALDPARDQSYFLYATTPEQLAFL 176 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG+ K+ R LARE+GL +ADK+DSQDICFV QG Y DV+ ++ A G+IV L Sbjct: 177 RFPLGERPKDETRALARELGLAVADKADSQDICFVPQGGYADVIAKLRPEAARPGEIVDL 236 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G+ LG H GII+YT+GQRRGL +++GEPL+VV L+ ++RV+VGPR +L RI L ++ Sbjct: 237 DGRRLGEHEGIIHYTVGQRRGLKLSVGEPLYVVRLEPETARVVVGPRAALATRRIRLTDL 296 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACV 366 NWLG D + D V++RS+++P P + N + + V+ E GV+ GQACV Sbjct: 297 NWLGS-RAPDGLAD-LPVAVRVRSTREPRPARLSWNAAEACLEVELVVPEDGVSPGQACV 354 Query: 367 FYTSDSNEARVLGGGII 383 Y D A+VLGGG I Sbjct: 355 IYADDGPRAQVLGGGTI 371 >gi|114569244|ref|YP_755924.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Maricaulis maris MCS10] gi|122316614|sp|Q0ARV1|MNMA_MARMM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|114339706|gb|ABI64986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Maricaulis maris MCS10] Length = 405 Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust. Identities = 209/374 (55%), Positives = 264/374 (70%), Gaps = 10/374 (2%) Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69 + L L NP D RVVVAMSGGVDSSV AALL GYDV+GVTLQLY+ A +KG+CCA Sbjct: 25 DPLGLGGNPGDHRVVVAMSGGVDSSVTAALLHHLGYDVVGVTLQLYDHGAAMAKKGACCA 84 Query: 70 GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 GQD+YDA+RV + HYV DYE RFR AVI FA +Y AG TP+PCV CN+TVKF+DL Sbjct: 85 GQDIYDAKRVAEACGFRHYVLDYESRFREAVIEEFADTYLAGFTPIPCVRCNQTVKFADL 144 Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 L+ RQLGA +ATGHYI+ DG + R D +DQSYFLFATT QL LR Sbjct: 145 LTTARQLGAVCMATGHYIQRV-----DGPNGAELRRAADAGKDQSYFLFATTHDQLDFLR 199 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 FPLG + K+ R+LA GL +ADK DSQDICFV G+Y D+V+++ G + G+IVH++ Sbjct: 200 FPLGHLNKDQTRELAEAFGLIVADKPDSQDICFVPNGRYVDIVEKVRPGASRPGEIVHVD 259 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 G++LG H G+I YT+GQRRGL +A+G+PL+VV LD + V+VGPRE+LE+ I L++IN Sbjct: 260 GRVLGTHEGVIRYTVGQRRGLKIAVGDPLYVVRLDAAKAEVVVGPREALEIDTIALKDIN 319 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 WLGD +A +DG VK+RS++ PVP + + D + V + E GVA GQACVFY+ Sbjct: 320 WLGD----EAPLDGAPVRVKVRSTRPPVPAALSVDGDDIRVVLARGEEGVAPGQACVFYS 375 Query: 370 SDSNEARVLGGGII 383 SD +E RVLGGG I Sbjct: 376 SD-DEDRVLGGGWI 388 >gi|218682213|ref|ZP_03529814.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhizobium etli CIAT 894] Length = 294 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 189/294 (64%), Positives = 232/294 (78%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +N+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+ A R GSCC Sbjct: 1 MNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRVC+T+ + HYV DYE+RFR VI PFA SY AGETP+PCV CN+TVKF+D Sbjct: 61 AGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFAD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRSR D RR + RP D +RDQSYFLFATTQ+Q+ L Sbjct: 121 LLATAKELGADALATGHYIRSRPNPLADKPGRRALFRPADADRDQSYFLFATTQEQIDYL 180 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K R LA EMGL +A K+DSQDICFV QGKY D++ ++ AL G+IVHL Sbjct: 181 RFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEIVHL 240 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302 +G++LG H GI+++TIGQRRG+G+A GEPL+VV+LD S RVIVGP+E+LE HR Sbjct: 241 DGRVLGTHEGILHFTIGQRRGIGIATGEPLYVVFLDARSRRVIVGPKEALETHR 294 >gi|329890336|ref|ZP_08268679.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Brevundimonas diminuta ATCC 11568] gi|328845637|gb|EGF95201.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Brevundimonas diminuta ATCC 11568] Length = 410 Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust. Identities = 206/371 (55%), Positives = 259/371 (69%), Gaps = 7/371 (1%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P+ RVV AMSGGVDS+VVAALL + GYDV+GVTLQLY+ +A K+KG+CCAGQD++DAR Sbjct: 42 PQGARVVAAMSGGVDSTVVAALLHKAGYDVVGVTLQLYDHGEALKKKGACCAGQDIHDAR 101 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 D I + HYV DYE RF++AVI FA SY G+TP+PC+ CN+TVKF DLL V R LG Sbjct: 102 LAADLIGIPHYVLDYENRFKDAVIDQFADSYLKGQTPVPCIRCNQTVKFRDLLDVARDLG 161 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A+ +ATGHY+R + G R + M + +D RDQSYFLFATTQ QL LRFPL D++K Sbjct: 162 AEAMATGHYVRRATH----GNRSQ-MRKAVDHSRDQSYFLFATTQDQLDYLRFPLADLEK 216 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR +A +GL IA K DSQDICFV G Y ++ R+ GDIVH++G++LGRH+ Sbjct: 217 PQVRGVAASLGLRIAAKPDSQDICFVPTGDYRTLIDRLRPQGREAGDIVHMDGRVLGRHS 276 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD-GLF 316 GI +YTIGQRRGL VA+GEPLFVV LD + RVIVGPRE+L R+ L E NWLGD Sbjct: 277 GITDYTIGQRRGLNVAVGEPLFVVKLDPDHRRVIVGPREALLTARLTLEETNWLGDQATI 336 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 E+A DG ++RS++ P P + D V V F++ E GVA GQACV Y +E R Sbjct: 337 EEAARDGAPVLARVRSTRQPSPARLALVDGAVQVVFDQGEEGVAPGQACVLYDPADDE-R 395 Query: 377 VLGGGIISGSK 387 V+GGG I ++ Sbjct: 396 VMGGGFIHSTE 406 >gi|315497620|ref|YP_004086424.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Asticcacaulis excentricus CB 48] gi|315415632|gb|ADU12273.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Asticcacaulis excentricus CB 48] Length = 402 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 206/376 (54%), Positives = 262/376 (69%), Gaps = 10/376 (2%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVV AMSGGVDSSV AALL GY+VIGVTLQLY+ +A K+ G+CCAGQD++DAR + Sbjct: 36 RVVAAMSGGVDSSVAAALLHAAGYEVIGVTLQLYDHGQALKKTGACCAGQDIHDARVAAE 95 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I ++HYV DYE RF+++VI FA SY GETP+PC+ CN+TVKF DLL V R LGA+ + Sbjct: 96 KIGIAHYVLDYESRFKDSVIEEFADSYLRGETPVPCIRCNQTVKFRDLLDVARDLGAEAM 155 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+ R D G R + R +D RDQSYFLFATT++QL LRFPL D+ K VR Sbjct: 156 ATGHYVERR----DTGNRAELR-RAIDRNRDQSYFLFATTREQLDFLRFPLADIPKPQVR 210 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 D+AR+MGL++A K DSQDICFV +GKY ++ R+ GDIVHL+G++LG+H GI Sbjct: 211 DIARQMGLNVAAKPDSQDICFVPEGKYTTLIDRLRPQGREAGDIVHLDGRVLGKHQGITG 270 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG-LFEDAV 320 YTIGQRRGL +A+GEPLFV+ LD + RVIVGPRE+L + ++E NWLGD E A Sbjct: 271 YTIGQRRGLNIAVGEPLFVIKLDAETRRVIVGPREALNTAALVMKETNWLGDHETLESAA 330 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 ++RS++ PVP + + V V F+ SE GVA GQACV Y ++E RVLGG Sbjct: 331 AAHLPVLARVRSTRPPVPARLNLREGQVEVVFDASEEGVAPGQACVLY-DPADEDRVLGG 389 Query: 381 GIISGSKRSDAVEESL 396 G I +R+ VE +L Sbjct: 390 GFI---ERTRPVELAL 402 >gi|254294555|ref|YP_003060578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Hirschia baltica ATCC 49814] gi|254043086|gb|ACT59881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Hirschia baltica ATCC 49814] Length = 409 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 197/375 (52%), Positives = 259/375 (69%), Gaps = 6/375 (1%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L DK + RVV AMSGGVDS+VVAALL GYDV+GVTLQLY+ A K++G+CCAGQ Sbjct: 31 LGFDKPRSETRVVAAMSGGVDSTVVAALLHHAGYDVVGVTLQLYDHGAALKKQGACCAGQ 90 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D++DARR CD + + HYV DYE RF+ V+ FA +Y AG TP+PCV CN+TVKF DLL Sbjct: 91 DIHDARRACDALGIPHYVLDYESRFKEQVMEDFADTYLAGSTPIPCVRCNQTVKFRDLLE 150 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 ++ LGAD +ATGHYIR VG++G + R D ++DQSYFLFATT +QL LRFP Sbjct: 151 TSKDLGADCMATGHYIRR--VVGENGPE---LARAADPDKDQSYFLFATTHEQLDYLRFP 205 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG M KES R +A +GL++A K DSQDICFV GKY +V+++ G +G+IVH++G+ Sbjct: 206 LGGMNKESTRKVASALGLEVASKPDSQDICFVPDGKYTAIVEKLRPGSGRKGEIVHMDGR 265 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 +LG H G+I YT+GQRRGLGVA GEP++VV +D +VIVGPRE+LE + + E NWL Sbjct: 266 VLGEHEGVIKYTVGQRRGLGVATGEPIYVVKIDAGKRQVIVGPREALETRGLSMGESNWL 325 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 G E+A ++RS++ P + + FE +E GVA GQACV Y++ Sbjct: 326 GANSLEEACASNTPALARVRSTRPPKAGHMAMINGQPGFMFEDAEEGVAPGQACVLYST- 384 Query: 372 SNEARVLGGGIISGS 386 + +RVLGGG I+G+ Sbjct: 385 GDASRVLGGGFITGT 399 >gi|300023996|ref|YP_003756607.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Hyphomicrobium denitrificans ATCC 51888] gi|299525817|gb|ADJ24286.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Hyphomicrobium denitrificans ATCC 51888] Length = 397 Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust. Identities = 194/369 (52%), Positives = 254/369 (68%), Gaps = 6/369 (1%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVVAMSGGVDSSV AA++K G+DVIGVTLQLY+ A+ RKGSCCAGQD++DARRV D Sbjct: 16 RVVVAMSGGVDSSVAAAIMKAAGHDVIGVTLQLYDHGSATGRKGSCCAGQDIHDARRVAD 75 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + HYV DYE RF VI FA SY GETP+PCV CN +KF DLL + LGA+VL Sbjct: 76 ALGIPHYVLDYEARFAQKVIESFAESYVHGETPIPCVTCNNEIKFRDLLETAKDLGAEVL 135 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 TGHY++ R D + + R +D +RDQSYFLF T+ QL L FP+G ++K VR Sbjct: 136 VTGHYVQRR-----DTEHGPELARAVDTDRDQSYFLFGITKAQLAALWFPVGALEKSEVR 190 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 DLAR L +ADKSDSQDICFV G+Y DV++R+ G+IVHL+G++LGRH GI++ Sbjct: 191 DLARSFNLPVADKSDSQDICFVPTGRYTDVIERLKPNALDAGNIVHLDGRVLGRHEGIVH 250 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YT+GQRRG+ + EPL+VV LD + V+VGPR +L + LR++NWLG+ F ++ Sbjct: 251 YTVGQRRGIKIPAAEPLYVVRLDAAKNEVVVGPRSALTTTGLILRDVNWLGENSFAESAR 310 Query: 322 DGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 +G + FV++RSSQ V + + G V+ E G+A+GQACVFY S ARVLGG Sbjct: 311 NGLELFVRMRSSQKLRAALVTADGETGGKVELHDGEEGIATGQACVFYASQEPGARVLGG 370 Query: 381 GIISGSKRS 389 G I+ + ++ Sbjct: 371 GWIAKTVKA 379 >gi|221233878|ref|YP_002516314.1| tRNA-specific 2-thiouridylase MnmA [Caulobacter crescentus NA1000] gi|220963050|gb|ACL94406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caulobacter crescentus NA1000] Length = 410 Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust. Identities = 205/373 (54%), Positives = 261/373 (69%), Gaps = 6/373 (1%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P+ R+V AMSGGVDS+V AALL R GYDV+GVTLQLY+ A RKG+CCAGQD+ DAR Sbjct: 35 PEGARIVAAMSGGVDSTVTAALLARAGYDVVGVTLQLYDHGAAISRKGACCAGQDILDAR 94 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + I + HYV DYE RFR VI FA +Y GETP+PCV CN+TVKF DLL V R LG Sbjct: 95 MAAERIGIPHYVLDYESRFREQVIEDFADAYLRGETPIPCVRCNQTVKFRDLLDVARDLG 154 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A+ +ATGHY++ R G+ G R + R D +DQSYFLFATT++QL LRFPLG M K Sbjct: 155 AEAMATGHYVQ-RAMPGNGGNRPELR-RAADPAKDQSYFLFATTREQLDFLRFPLGGMDK 212 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 +VR +A +GL IADK DSQDICFV +GKY V+ RI A GD+VHL+G++LGRH Sbjct: 213 PTVRAVAAGLGLSIADKPDSQDICFVPEGKYTTVIDRIRPQGAEAGDVVHLDGRVLGRHE 272 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG--DGL 315 G+ YTIGQRRGL +A+G+PLFVV ++ + +VIVGPRE+L + L+E +WLG D L Sbjct: 273 GVTRYTIGQRRGLNIAVGDPLFVVKINADKRQVIVGPREALLTASLTLKEGSWLGAQDSL 332 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 E A DG + ++RS+++PVP + D + V F+ +E GVA GQACV Y ++ Sbjct: 333 -EAAAEDGQRVLARVRSTREPVPGRLAMIDGALSVVFDGAEEGVAPGQACVLYDP-ADPD 390 Query: 376 RVLGGGIISGSKR 388 RVLGGG I+G+ R Sbjct: 391 RVLGGGFIAGTTR 403 >gi|16125150|ref|NP_419714.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caulobacter crescentus CB15] gi|14195261|sp|P58074|MNMA_CAUCR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|13422162|gb|AAK22882.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caulobacter crescentus CB15] Length = 383 Score = 399 bits (1024), Expect = e-109, Method: Compositional matrix adjust. Identities = 205/373 (54%), Positives = 261/373 (69%), Gaps = 6/373 (1%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P+ R+V AMSGGVDS+V AALL R GYDV+GVTLQLY+ A RKG+CCAGQD+ DAR Sbjct: 8 PEGARIVAAMSGGVDSTVTAALLARAGYDVVGVTLQLYDHGAAISRKGACCAGQDILDAR 67 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + I + HYV DYE RFR VI FA +Y GETP+PCV CN+TVKF DLL V R LG Sbjct: 68 MAAERIGIPHYVLDYESRFREQVIEDFADAYLRGETPIPCVRCNQTVKFRDLLDVARDLG 127 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A+ +ATGHY++ R G+ G R + R D +DQSYFLFATT++QL LRFPLG M K Sbjct: 128 AEAMATGHYVQ-RAMPGNGGNRPELR-RAADPAKDQSYFLFATTREQLDFLRFPLGGMDK 185 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 +VR +A +GL IADK DSQDICFV +GKY V+ RI A GD+VHL+G++LGRH Sbjct: 186 PTVRAVAAGLGLSIADKPDSQDICFVPEGKYTTVIDRIRPQGAEAGDVVHLDGRVLGRHE 245 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG--DGL 315 G+ YTIGQRRGL +A+G+PLFVV ++ + +VIVGPRE+L + L+E +WLG D L Sbjct: 246 GVTRYTIGQRRGLNIAVGDPLFVVKINADKRQVIVGPREALLTASLTLKEGSWLGAQDSL 305 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 E A DG + ++RS+++PVP + D + V F+ +E GVA GQACV Y ++ Sbjct: 306 -EAAAEDGQRVLARVRSTREPVPGRLAMIDGALSVVFDGAEEGVAPGQACVLYDP-ADPD 363 Query: 376 RVLGGGIISGSKR 388 RVLGGG I+G+ R Sbjct: 364 RVLGGGFIAGTTR 376 >gi|197104258|ref|YP_002129635.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Phenylobacterium zucineum HLK1] gi|196477678|gb|ACG77206.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Phenylobacterium zucineum HLK1] Length = 371 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 200/372 (53%), Positives = 254/372 (68%), Gaps = 7/372 (1%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P R+V AMSGGVDS+V AALL R GYDV+GVTLQLY+ A ++KG+CCAGQD++DAR Sbjct: 4 PAGTRIVAAMSGGVDSTVTAALLARAGYDVVGVTLQLYDHGAAVQKKGACCAGQDIHDAR 63 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + I + HYV DYE RF+ VI FA +Y GETP+PC+ CN+TVKF DLL V R LG Sbjct: 64 TAAEGIGIPHYVLDYESRFKQQVIEDFADAYLRGETPIPCIRCNQTVKFRDLLDVARDLG 123 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A +ATGHY+R G +G + R D RDQSYFLFATT +QL LRFPLG M K Sbjct: 124 AQAMATGHYVRRE--AGAEGPE---LHRAADPARDQSYFLFATTAEQLDYLRFPLGAMPK 178 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 +VR A E+GL +ADK DSQDICFV +G+Y ++ R+ A GDIVHL+G++LGRH Sbjct: 179 PAVRAAAAELGLAVADKPDSQDICFVPEGRYTTIIDRLRPQGAEPGDIVHLDGRVLGRHE 238 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL-F 316 G+ YTIGQRRGL VA+G+PLFVV +D ++ +V+VGPRE+L + L+E NW+G G Sbjct: 239 GVTRYTIGQRRGLNVAVGDPLFVVRIDADARQVVVGPREALLTRALGLKETNWIGGGPSI 298 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 E A G ++RS+++PVP + D V F+ E GVA GQACV Y +S R Sbjct: 299 EAACEAGRPVLARVRSTREPVPGRLSLVDGVPGVVFDNPEEGVAPGQACVLYAPES-PTR 357 Query: 377 VLGGGIISGSKR 388 VLGGG I+G+ R Sbjct: 358 VLGGGFIAGTVR 369 >gi|295690747|ref|YP_003594440.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caulobacter segnis ATCC 21756] gi|295432650|gb|ADG11822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caulobacter segnis ATCC 21756] Length = 409 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 206/374 (55%), Positives = 256/374 (68%), Gaps = 7/374 (1%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P+ R+V AMSGGVDS+V AALL R GYDV+GVTLQLY+ A RKG+CCAGQD+ DAR Sbjct: 35 PEGTRIVAAMSGGVDSTVTAALLARAGYDVVGVTLQLYDHGAAISRKGACCAGQDILDAR 94 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + I + HYV DYE RFR VI FA +Y GETP+PCV CN+TVKF DLL V R LG Sbjct: 95 MAAERIGIPHYVLDYESRFREQVIEDFADAYLRGETPIPCVRCNQTVKFRDLLDVARDLG 154 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A+ +ATGHY++ + G + + R R D +DQSYFLFATT++QL LRFPLG M K Sbjct: 155 AEAMATGHYVQRGMPAGTNRPQLR---RAADPAKDQSYFLFATTREQLDFLRFPLGGMDK 211 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 +VR +A +GL IADK DSQDICFV +GKY V+ RI A GDIVHL+G++LGRH Sbjct: 212 PTVRAVAAGLGLSIADKPDSQDICFVPEGKYTTVIDRIRPQGAEAGDIVHLDGRVLGRHE 271 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG--DGL 315 G+ YTIGQRRGL VA+G+PLFVV +D + +VIVGPRE+L + L+E NWLG D L Sbjct: 272 GVTRYTIGQRRGLNVAVGDPLFVVRIDADKRQVIVGPREALLTAALTLKETNWLGGQDDL 331 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 A +G ++RS+++PV + D V V F+ SE GVA GQACV Y E Sbjct: 332 AA-AADEGQPVLARVRSTREPVAGRLSLLDGEVAVTFDGSEEGVAPGQACVLYDPADPE- 389 Query: 376 RVLGGGIISGSKRS 389 RVLGGG I+ + R+ Sbjct: 390 RVLGGGFIARAVRA 403 >gi|254419496|ref|ZP_05033220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brevundimonas sp. BAL3] gi|196185673|gb|EDX80649.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brevundimonas sp. BAL3] Length = 400 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 202/367 (55%), Positives = 251/367 (68%), Gaps = 7/367 (1%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P RVV AMSGGVDS+VVAALL + GYDV+GVTLQLY+ A K+KG+CCAGQD++DAR Sbjct: 32 PVGARVVAAMSGGVDSTVVAALLHKAGYDVVGVTLQLYDHGAALKKKGACCAGQDIHDAR 91 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + I + HYV DYE RF++AVI FA SY G+TP+PC+ CN+TVKF DLL V R LG Sbjct: 92 LAAEMIGIPHYVLDYESRFKDAVIDQFADSYLKGQTPVPCIRCNQTVKFRDLLDVARDLG 151 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A+ +ATGHY+R R VG+ R M + +D RDQSYFLFATTQ QL LRFPL D++K Sbjct: 152 AEAMATGHYVR-RAAVGN----RSQMRKAIDHSRDQSYFLFATTQDQLDYLRFPLADLEK 206 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR +A E+GL IA K DSQDICFV G Y ++ R+ G+IVH++G++LG H Sbjct: 207 PQVRGVAAELGLKIAAKPDSQDICFVPSGDYRTLIDRLRPQGREAGEIVHMDGRVLGTHA 266 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD-GLF 316 GI +YTIGQRRGL VA+GEPLFVV L+ + RVIVGPRE+L + L E NWLGD Sbjct: 267 GITDYTIGQRRGLNVAVGEPLFVVKLEPETRRVIVGPREALLTASLTLEETNWLGDEATI 326 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 +A ++RS++ P P + DD V V F++ E GVA GQAC Y D + R Sbjct: 327 MEAAQANLPVLARVRSTRPPSPARLILIDDQVCVVFDEGEEGVAPGQACALYDPDDPD-R 385 Query: 377 VLGGGII 383 VLGGG I Sbjct: 386 VLGGGFI 392 >gi|84686908|ref|ZP_01014792.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Maritimibacter alkaliphilus HTCC2654] gi|84665105|gb|EAQ11585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacterales bacterium HTCC2654] Length = 381 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 202/386 (52%), Positives = 259/386 (67%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + R+NSL K + RVVVAMSGGVDSSVVAA LKR+GYDVIGVTLQLY+ A Sbjct: 1 MSLDTEIRVNSLGFAKPESETRVVVAMSGGVDSSVVAAKLKREGYDVIGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + + HYV DYE FR AVI FA SY G TP+PC+ C Sbjct: 61 LAKKGACCAGVDIHDARRVAEEMGFPHYVLDYENIFREAVIEEFADSYLGGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL+ + L AD +ATGHYI+ + GD G + R D RDQSYFLF+T Sbjct: 121 NERVKFKDLLATAKDLDADCMATGHYIQR--FDGDAGPE---LHRAADANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG +K K+ R LARE GL++ADK DSQDICFV G Y V++++ G Sbjct: 176 TPEQLSFLRFPLGHLKTKDETRALAREFGLEVADKPDSQDICFVPDGNYAGVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IVH +G++LGRH+G+I+YTIGQRRGLG+ + +PL+VV LD + +V+VGP+E L Sbjct: 236 AEPGEIVHADGRVLGRHDGVIHYTIGQRRGLGIGGLSDPLYVVRLDTETRQVVVGPKEML 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 I +REINWLGD F + VK+RS++ P ++ ++ V+ E Sbjct: 296 ATRTIPVREINWLGDAPFTSQ--GEWHLSVKVRSTRPPREAVIRPISETEAEVELLTPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 GV+ GQACVFY DS+ R+ GGG I Sbjct: 354 GVSPGQACVFYAPDSS--RIFGGGWI 377 >gi|167644970|ref|YP_001682633.1| tRNA-specific 2-thiouridylase MnmA [Caulobacter sp. K31] gi|205811623|sp|B0SWD8|MNMA_CAUSK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|167347400|gb|ABZ70135.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caulobacter sp. K31] Length = 409 Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/377 (52%), Positives = 253/377 (67%), Gaps = 9/377 (2%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P R+V AMSGGVDS+V AALL + GYDV+GVTLQLY+ A +KG+CCAGQD+ DAR Sbjct: 35 PVGTRIVAAMSGGVDSTVTAALLAKAGYDVVGVTLQLYDHGAAITKKGACCAGQDILDAR 94 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + I + HYV DYE RF+ VI FA +Y GETP+PCV CN+TVKF DLL V R LG Sbjct: 95 MAAERIGIPHYVLDYESRFKEQVIEEFADAYLRGETPIPCVRCNQTVKFRDLLDVARDLG 154 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A+ +ATGHY++ G + + R R D +DQSYFLFATT +QL LRFPLG M K Sbjct: 155 AEAMATGHYVQRSFAAGANRPQLR---RAADPAKDQSYFLFATTAEQLDFLRFPLGGMDK 211 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 +VR +A E+GL IADK DSQDICFV +GKY V+ RI AL GD+VH++G++LGRH Sbjct: 212 PTVRLVAAELGLAIADKPDSQDICFVPEGKYTTVIDRIRPHGALPGDLVHMDGRVLGRHE 271 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLF 316 G+ YTIGQRRGL +A+G+PLFVV +D + +VIVGPRE+L + L+E NWLG + Sbjct: 272 GVTRYTIGQRRGLNIAVGDPLFVVKIDADKRQVIVGPREALLTQALSLKEGNWLGVEDSL 331 Query: 317 EDAVVDGFKCFVKIRSSQDPVP----VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 E A G ++RS+++PVP + N + F+ E GVA GQACV Y Sbjct: 332 EAAAAAGAPVLARVRSTREPVPGRLTLVPGPNGGEPRLVFDGLEEGVAPGQACVLYDPAD 391 Query: 373 NEARVLGGGIISGSKRS 389 E RVLGGG I ++R+ Sbjct: 392 PE-RVLGGGFIVATERA 407 >gi|302382556|ref|YP_003818379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brevundimonas subvibrioides ATCC 15264] gi|302193184|gb|ADL00756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brevundimonas subvibrioides ATCC 15264] Length = 407 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 199/371 (53%), Positives = 253/371 (68%), Gaps = 8/371 (2%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P RVV AMSGGVDS+VVAALL + GYDV+GVTLQLY+ A K+KG+CCAGQD++DAR Sbjct: 37 PVGSRVVAAMSGGVDSTVVAALLHKAGYDVVGVTLQLYDHGAALKKKGACCAGQDIHDAR 96 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + + + HYV DYE RFR+AVI FA SY G+TP+PC+ CN+TVKF DLL V R LG Sbjct: 97 LAAEMLGIPHYVLDYESRFRDAVIDQFADSYLKGQTPVPCIRCNQTVKFRDLLDVARDLG 156 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A +ATGHY+ V DG+ + M + +D RDQSYFLFATT+ QL LRFPL ++K Sbjct: 157 AAAMATGHYVGR--AVAADGRAQ--MRKAIDPSRDQSYFLFATTRDQLDYLRFPLAGLEK 212 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 +VR +A E+GL IA K DSQDICFV G Y ++ R+ G+IVH++G++LG H Sbjct: 213 PAVRGVAAELGLRIAAKPDSQDICFVPSGDYRTLIDRLRPQGREAGEIVHMDGRVLGHHA 272 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD-GLF 316 GI +YTIGQRRGL VA+GEPLFV LD ++ RVIVGPRE+L + L E NWLGD Sbjct: 273 GITDYTIGQRRGLNVAVGEPLFVTRLDPDTRRVIVGPREALLTASLTLDETNWLGDEASI 332 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC-VFYTSDSNEA 375 E A ++RS++ P P + D G+ V FE E GVA GQAC ++Y SD + Sbjct: 333 EAAAAANTPVLARVRSTRPPSPARLTLADSGISVVFETGEEGVAPGQACALYYPSDPD-- 390 Query: 376 RVLGGGIISGS 386 R+LGGG I+ + Sbjct: 391 RLLGGGFIAST 401 >gi|262276991|ref|ZP_06054784.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha proteobacterium HIMB114] gi|262224094|gb|EEY74553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha proteobacterium HIMB114] Length = 377 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 194/388 (50%), Positives = 263/388 (67%), Gaps = 13/388 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 + +++ T N L DK+ +VVVAMSGGVDSSVVAALLK+DGYDVIG+TLQL++ K Sbjct: 3 LAITDITEKNILGFDKDKSQTKVVVAMSGGVDSSVVAALLKKDGYDVIGITLQLFDYGKI 62 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 K KG+CCAG+D+YDA++VCD + + H VF+YE F+ VI FA SY GETP+PCVDC Sbjct: 63 GKTKGTCCAGKDIYDAKKVCDQLEIKHEVFNYESIFKEEVIEKFADSYIKGETPIPCVDC 122 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N+TVKF DL + L AD LATGHY++ R++ +M RP DL RDQSYFLF T Sbjct: 123 NQTVKFRDLFKSAKNLDADALATGHYVK-RIF-----NHSAMMYRPEDLNRDQSYFLFNT 176 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 TQ+QL LRFPL + K RD+AR++ L +A+K DSQDICFV G Y +V+++ Sbjct: 177 TQEQLDYLRFPLASLPKTKTRDIARDLKLQVANKPDSQDICFVPNGNYKTIVEKLRPESF 236 Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300 +EG+IV G+ILG+HNGI N+TIGQR+G+ V+ +P FV+ +D ++V++G RE L V Sbjct: 237 VEGEIVDTKGKILGKHNGIANFTIGQRKGIKVSSIDPFFVIRIDPKKNQVVIGSREELSV 296 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360 IYL++IN+L D ++ + F FVK+RS+ + + V +D+G V E GV+ Sbjct: 297 QTIYLKDINYLCD---KEQLNGDF--FVKVRSTGNLLECNV--SDNGHKVTLLSGETGVS 349 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKR 388 GQACVFY D RV GGG I +++ Sbjct: 350 PGQACVFYKKDEFGMRVYGGGWIDRTEK 377 >gi|114766932|ref|ZP_01445852.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pelagibaca bermudensis HTCC2601] gi|114540839|gb|EAU43901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseovarius sp. HTCC2601] Length = 380 Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust. Identities = 200/382 (52%), Positives = 258/382 (67%), Gaps = 12/382 (3%) Query: 5 EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64 +A LNSL L K P + RVVVAMSGGVDSSVVAA+L +GYDV+GVTLQLY+ A +K Sbjct: 4 DAPTLNSLGLPKPPSETRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAALAKK 63 Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 G+CCAG D++DARRV + + HYV DYE FR+AVI FA SY G TP+PC+ CN V Sbjct: 64 GACCAGIDIHDARRVAEQMGFPHYVLDYENIFRDAVIDEFAESYLGGATPVPCIRCNERV 123 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 KF DLL + L AD +ATGHYI+ VGD G + D RDQSYFLF+TT +Q Sbjct: 124 KFKDLLETAKDLDADCMATGHYIQR--MVGDQGAE---LHSAADANRDQSYFLFSTTPEQ 178 Query: 185 LCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243 L LRFPLG +K K R+LA + GL +ADK DSQDICFV G Y V++++ G A G Sbjct: 179 LDYLRFPLGHLKSKAETRELAAKYGLSVADKPDSQDICFVPDGNYASVIEKLRPGAAEPG 238 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302 +IVH +G++LG H G+I+YTIGQRRGLG+ + EPL+VV LD ++ +VIVGP+E L + Sbjct: 239 EIVHADGRVLGEHRGVIHYTIGQRRGLGIGGLTEPLYVVKLDVDNKQVIVGPKEMLATRK 298 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361 + +REINWLGD F + + VK+RS++ P V+ ++ V+ +E GV+ Sbjct: 299 VPVREINWLGDAPFTSR--EEWHLSVKVRSTRPPREAIVRPISETEAEVELVVAEEGVSP 356 Query: 362 GQACVFYTSDSNEARVLGGGII 383 GQACVFY DS+ R+ GGG I Sbjct: 357 GQACVFYDPDSS--RIFGGGWI 376 >gi|304321619|ref|YP_003855262.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Parvularcula bermudensis HTCC2503] gi|303300521|gb|ADM10120.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Parvularcula bermudensis HTCC2503] Length = 409 Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust. Identities = 200/385 (51%), Positives = 261/385 (67%), Gaps = 14/385 (3%) Query: 1 MVVSEATRLNSLDLDKN-PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK 59 M+ + T L + LD PK R+VVAMSGGVDSSV AAL+ R GYDV+G+TLQLY+ Sbjct: 4 MIKTPLTDLTASQLDLGLPKGARIVVAMSGGVDSSVTAALVHRAGYDVVGITLQLYDHGV 63 Query: 60 ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119 A +KG+CCAGQD+ DAR V D + + HYV DYE+RF ++V+ FA +Y AG TP+PCV Sbjct: 64 AIAKKGACCAGQDIADARAVADRLGIPHYVLDYEDRFGDSVMQDFADTYLAGATPIPCVR 123 Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 CN+ VKF DLL R LGA +ATGHYIR D R + R D +DQSYFLFA Sbjct: 124 CNQRVKFRDLLHTARDLGAAAMATGHYIRR-----TDDDRGLALRRAEDAGKDQSYFLFA 178 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 TT++QL LRFPLGD+ KE+ R +A E+GL +ADK DSQDICFV +G+Y VV+R+ G Sbjct: 179 TTREQLSFLRFPLGDLPKETTRQIAAELGLGVADKPDSQDICFVPEGRYASVVERLRPGA 238 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G IV LNGQ+LG+H GII+YT+GQRRGL + + EPL+V+ LD + + V+VGP+ +L Sbjct: 239 ATPGAIVDLNGQVLGQHQGIIHYTVGQRRGLALGGLVEPLYVIRLDADRAEVVVGPKAAL 298 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVG 358 V I L E+NWLG E+A + VK+RS++ PV ++R+ V F++ + G Sbjct: 299 GVRAIRLDEMNWLGT---EEAAT--HRVAVKVRSTKPPVLAVLKRSGAEAEVMFDEPQEG 353 Query: 359 VASGQACVFYTSDSNEARVLGGGII 383 VA GQA VFY ++ VLGGG I Sbjct: 354 VAPGQAGVFYALKDDQ--VLGGGWI 376 >gi|297181386|gb|ADI17576.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain-protein [uncultured alpha proteobacterium HF0130_06E21] Length = 454 Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust. Identities = 211/381 (55%), Positives = 256/381 (67%), Gaps = 17/381 (4%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSL D+ P + RVVVAMSGGVDSSV AALL GYDV+G+TLQLY+ A+ R +CC Sbjct: 75 MNSLGFDRPPAETRVVVAMSGGVDSSVTAALLHEQGYDVVGITLQLYDHGAATARFKACC 134 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+YDA RV D I HYV DYE RFR VI FA +Y GETP+PCV CN+TVKF D Sbjct: 135 AGQDIYDAYRVADMIGFPHYVLDYESRFREDVIENFADAYVRGETPIPCVTCNQTVKFRD 194 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 L++ R LGAD LATGHYIR G G + R +D RDQSYFLFATT QL L Sbjct: 195 LVATARDLGADALATGHYIRRE--AGPGGAE---LHRAVDASRDQSYFLFATTHDQLDFL 249 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K+ VR+ AR +GL IA+K DSQDICFV GKY +V+++ G A GDIVHL Sbjct: 250 RFPLGDMPKDQVREHARRLGLAIAEKPDSQDICFVPDGKYAQIVEKLRPGAAEPGDIVHL 309 Query: 249 NGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 NG +LG H GI+N+TIGQRRG+G+ A + L+VV LD + RVIVGPRE+L R+ Sbjct: 310 NGTVLGEHEGILNFTIGQRRGIGIGGRKDADADALYVVRLDPETRRVIVGPREALATSRV 369 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASG 362 + +NWLG+G + +G + VKIRS+ +PVP V G V+ E GV+ G Sbjct: 370 PVNGLNWLGEG--DAPPAEGVEVSVKIRSTMEPVPGRVAGISCGAAMVELAMPEFGVSPG 427 Query: 363 QACVFYTSDSNEARVLGGGII 383 QA VFY + ARVLGGG I Sbjct: 428 QAAVFY----DGARVLGGGWI 444 >gi|254462137|ref|ZP_05075553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacterales bacterium HTCC2083] gi|206678726|gb|EDZ43213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacteraceae bacterium HTCC2083] Length = 381 Score = 379 bits (973), Expect = e-103, Method: Compositional matrix adjust. Identities = 197/386 (51%), Positives = 254/386 (65%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + AT+LNSL K P D RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A Sbjct: 1 MALDTATKLNSLGFAKAPSDTRVVVAMSGGVDSSVVAAQLASEGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + + HYV DYE F++AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGLDIHDARRVAEEMGFPHYVLDYENVFKDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL + L AD +ATGHYI+ ++ G + + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETAKDLDADCMATGHYIQRKM-----GPEKAELHAAADGARDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 Q+QL LRFPLG + K++ R+LA + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 KQEQLDFLRFPLGHLPSKDATRELAAKFGLSVADKPDSQDICFVPNGNYAAVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A GDIV G +LG+H G+I+YTIGQRRGLG+ + PL+VV LD + VIVGP+E L Sbjct: 236 AEAGDIVDTEGNVLGKHEGVIHYTIGQRRGLGIGGLETPLYVVRLDVDLKHVIVGPKELL 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 I +REINWLGD + + V++RS++ P P ++ +D V+ E Sbjct: 296 STRTIPVREINWLGDAPLSSK--EEWHVLVRVRSTRPPRPAIIRPISDVEATVELLTPED 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 GV+ GQACVFY +DS R+ GGG I Sbjct: 354 GVSPGQACVFYDTDST--RIFGGGWI 377 >gi|149915230|ref|ZP_01903758.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseobacter sp. AzwK-3b] gi|149810951|gb|EDM70790.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseobacter sp. AzwK-3b] Length = 379 Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust. Identities = 200/378 (52%), Positives = 255/378 (67%), Gaps = 12/378 (3%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSL K P D RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A +KG+CC Sbjct: 7 LNSLGFAKAPADTRVVVAMSGGVDSSVVAAQLAEEGYDVVGVTLQLYDHGAALAKKGACC 66 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AG D++DARRV + + HYV DYE FR+AVI FA SY AG TP+PC+ CN VKF D Sbjct: 67 AGIDIHDARRVAEDMGFPHYVLDYENIFRDAVIDEFADSYLAGATPVPCIRCNERVKFKD 126 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL R L AD +ATGHYI+ ++ G G + C D RDQSYFLF+TT +QL L Sbjct: 127 LLETARDLDADCMATGHYIQRKM--GAHGP--ELHCA-ADAARDQSYFLFSTTPEQLDFL 181 Query: 189 RFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 RFPLG + K + R+LA GL +ADK DSQDICFV G Y V++++ G A G+I H Sbjct: 182 RFPLGHLPSKHATRELAARYGLKVADKPDSQDICFVPDGNYAAVIEKLRPGAAEPGEIAH 241 Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 ++G+ILG H G+I+YTIGQRRGLG+ + EPL+VV LD ++ RVIVGP+E L + +R Sbjct: 242 VDGRILGTHEGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDAQRVIVGPKELLATRLVPVR 301 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365 EINWLGD F+ + VK+RS++ P ++ D G V+ E GV+ GQAC Sbjct: 302 EINWLGDAPFDSR--PEWHLSVKLRSTRPPQEAILRPLPDGGAEVELLSPEEGVSPGQAC 359 Query: 366 VFYTSDSNEARVLGGGII 383 VFY ++ ++R+LGGG I Sbjct: 360 VFY--ETGDSRILGGGWI 375 >gi|260426477|ref|ZP_05780456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Citreicella sp. SE45] gi|260420969|gb|EEX14220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Citreicella sp. SE45] Length = 380 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 197/382 (51%), Positives = 256/382 (67%), Gaps = 12/382 (3%) Query: 5 EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64 +A +LNSL L K P + RVVVAMSGGVDSSVVAA+L +GYDV+GVTLQLY+ A +K Sbjct: 4 DAPKLNSLGLPKPPSETRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAALAKK 63 Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 G+CCAG D++DARRV + + HYV DYE FR+AVI FA SY G TP+PC+ CN V Sbjct: 64 GACCAGIDIHDARRVAEQMGFPHYVLDYENIFRDAVIDEFAESYLGGATPVPCIRCNERV 123 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 KF DLL + L AD +ATGHYI+ VGD G + D RDQSYFLF+TT +Q Sbjct: 124 KFKDLLETAKDLDADCMATGHYIQR--MVGDRGPE---LHSAADANRDQSYFLFSTTPEQ 178 Query: 185 LCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243 L LRFPLG +K K R LA + GL +ADK DSQDICFV G Y V++++ G A G Sbjct: 179 LSFLRFPLGHLKSKAETRALAAKYGLSVADKPDSQDICFVPDGNYASVIEKLRPGAAEPG 238 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302 +IVH++G++LG H G+I+YTIGQRRGLG+ + +PL+VV LD + +VIVGP+E L Sbjct: 239 EIVHVDGRVLGEHRGVIHYTIGQRRGLGIGGLSDPLYVVKLDVDKKQVIVGPKELLATRT 298 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361 + +REINWLGD F + VK+RS++ P ++ ++ V+ +E GV+ Sbjct: 299 VPVREINWLGDEPFTSR--KEWHVSVKVRSTRPPREAVIRPISETEAEVELVVAEEGVSP 356 Query: 362 GQACVFYTSDSNEARVLGGGII 383 GQACVFY D+ +R+ GGG I Sbjct: 357 GQACVFY--DTESSRIFGGGWI 376 >gi|86138410|ref|ZP_01056984.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseobacter sp. MED193] gi|85824935|gb|EAQ45136.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseobacter sp. MED193] Length = 381 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 200/386 (51%), Positives = 256/386 (66%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + T LNSL K P + RVVVAMSGGVDSSVVAA L GYDVIGVTLQLY+ A Sbjct: 1 MALDTDTPLNSLGFAKPPAETRVVVAMSGGVDSSVVAAYLADQGYDVIGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + HYV DYE F++AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL R L AD +ATGHYI+ ++ GD+G + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETARDLEADCMATGHYIQRKM--GDNGAE---LHSAEDANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K++ R++A + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 TPEQLDYLRFPLGHLPSKDATREMAAQYGLAVADKPDSQDICFVPDGNYTSVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IVH +G++LG H G+I+YTIGQRRGLG+ + EPL+VV LD + +VIVGP+E L Sbjct: 236 AEPGEIVHADGRVLGTHTGVIHYTIGQRRGLGIGGLTEPLYVVRLDVDKKQVIVGPKELL 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 I +REINWLGD F+ + VK+RS++ P ++ + V+ E Sbjct: 296 ATRTIPVREINWLGDAPFDSR--QEWNVMVKVRSTRPPREAIIRPLSATTAEVELLTPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 GV+ GQACVFY SDS+ R+ GGG I Sbjct: 354 GVSPGQACVFYDSDSS--RIFGGGWI 377 >gi|85702766|ref|ZP_01033870.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseovarius sp. 217] gi|85671694|gb|EAQ26551.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseovarius sp. 217] Length = 383 Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust. Identities = 201/386 (52%), Positives = 256/386 (66%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + LNSL K P + RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A Sbjct: 1 MALDTNKPLNSLGFPKPPAETRVVVAMSGGVDSSVVAAHLASEGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + + HYV DYE FR+AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGVDIHDARRVAEEMGFPHYVLDYENIFRDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL R L AD +ATGHYI+ +L G G + C D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETARDLEADCMATGHYIQRKL--GSQGP--ELHCA-SDSARDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K + R+LA + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 TPEQLDYLRFPLGHLPSKAATRELAAQYGLQVADKPDSQDICFVPNGNYASVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IVH +G++LG+H G+I+YTIGQRRGLG+ + EPL+VV LD ++ RVIVGP+E L Sbjct: 236 AEPGEIVHADGRVLGQHEGVIHYTIGQRRGLGIGGLEEPLYVVRLDVDARRVIVGPKEML 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + LREINWLGD ++ VK+RS++ P ++ + V+ E Sbjct: 296 STRTVPLREINWLGDVPMTSQTE--WQVSVKVRSTRPPREAVLRPISATEATVELLTPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 GV+ GQACVFY +D + RVLGGG I Sbjct: 354 GVSPGQACVFYETDGS--RVLGGGWI 377 >gi|99081242|ref|YP_613396.1| tRNA-specific 2-thiouridylase MnmA [Ruegeria sp. TM1040] gi|123077645|sp|Q1GGT2|MNMA_SILST RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|99037522|gb|ABF64134.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ruegeria sp. TM1040] Length = 381 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 195/386 (50%), Positives = 257/386 (66%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + +NSL K+P + RVVVAMSGGVDSSVVAA L GYDV+GVTLQLY+ A Sbjct: 1 MALDNEAPVNSLGFAKSPAETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + HYV DYE F++AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL + L AD +ATGHYI+ ++ G+ G + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETAKDLEADCMATGHYIQRKM--GEHGPE---LHSAEDANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K++ R++A + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 TPEQLDFLRFPLGHLPSKDATREMAAQYGLSVADKPDSQDICFVPNGDYASVIQKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G IVH +G++LG HNG+I+YTIGQRRGLG+ + EPL+VV LD + +VIVGP+E L Sbjct: 236 AEPGQIVHADGRVLGEHNGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDQKQVIVGPKEML 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 R+ +REINWLGD F D + VK+RS++ P ++ ++ V+ +E Sbjct: 296 ATRRVPVREINWLGDAPFTSR--DEWHLSVKVRSTRPPRDAIIRPISETEAEVELFSAEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 G++ GQACVFY D N +R+ GGG I Sbjct: 354 GISPGQACVFY--DPNGSRIYGGGWI 377 >gi|84516171|ref|ZP_01003531.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Loktanella vestfoldensis SKA53] gi|84509867|gb|EAQ06324.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Loktanella vestfoldensis SKA53] Length = 379 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 196/378 (51%), Positives = 254/378 (67%), Gaps = 12/378 (3%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSL K P D RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A +KG+CC Sbjct: 7 INSLGFAKAPADTRVVVAMSGGVDSSVVAAKLAEEGYDVVGVTLQLYDHGAALAKKGACC 66 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AG+D++DARRV + + HYV DYE FR AV+ FA SY G TP+PC+ CN VKF D Sbjct: 67 AGRDIHDARRVAEEMGFPHYVLDYENTFREAVMDEFADSYLGGATPVPCIRCNERVKFKD 126 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL R L AD +ATGHYI+ ++ G + + D +DQSYFLF+TTQ QL L Sbjct: 127 LLQTARDLDADCMATGHYIQRKM-----GVQGAELHSAADAAKDQSYFLFSTTQDQLDYL 181 Query: 189 RFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 RFPLG K K+ R LA + GL +ADK DSQDICFV G Y V++++ G A G IV Sbjct: 182 RFPLGHHKSKDETRALAAKYGLSVADKPDSQDICFVPNGDYAAVIEKLRPGAASPGTIVD 241 Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 +NGQ+LG+HNG+I+YT+GQRRGLG+ + +PL+VV LD + +VIVGP++ L R+ LR Sbjct: 242 INGQVLGQHNGVIHYTVGQRRGLGIGGLADPLYVVRLDVDKKQVIVGPKDMLATRRVPLR 301 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365 EINW+G G D + + V++RS++ P ++ +D V+ +E GV+ GQAC Sbjct: 302 EINWIGGGKLTD--IAERQIAVRVRSTRPPTDAILRPISDTEAEVELLVAEQGVSPGQAC 359 Query: 366 VFYTSDSNEARVLGGGII 383 VFY +DS RVLGGG I Sbjct: 360 VFYDTDST--RVLGGGWI 375 >gi|167042070|gb|ABZ06805.1| putative tRNA methyl transferase [uncultured marine microorganism HF4000_141I21] Length = 382 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 184/379 (48%), Positives = 255/379 (67%), Gaps = 10/379 (2%) Query: 5 EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64 ++ + NSL K PKD +VVVAMSGGVDSS VA L+K+DGYDVIG+TL+LY+ K+SK Sbjct: 4 KSEKFNSLGFLKRPKDTKVVVAMSGGVDSSTVAGLMKKDGYDVIGITLKLYDDAKSSKES 63 Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 CCAGQD+ DA+RV +N+ H + Y+++F+ VI F SY AGETP+PCV CN+TV Sbjct: 64 RQCCAGQDILDAKRVSQQLNIDHKILYYQKKFKKDVIDSFIDSYVAGETPIPCVQCNQTV 123 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 KF DL S ++ AD L TGHY+ + +G M R +DL RDQSYFLF+TTQ+Q Sbjct: 124 KFRDLYSYALEMKADALITGHYVNR---IKKNGNAE--MYRAIDLTRDQSYFLFSTTQEQ 178 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 L LRFPLG M+K+ R +A ++ L++ADK DSQDICFV G Y ++K+ +G+ Sbjct: 179 LNFLRFPLGQMQKKETRKIASKLKLNVADKPDSQDICFVPNGNYASIIKKYRPESFQKGN 238 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 I+ + G I+G+H+GIIN+TIGQR+G+G+A EPL+V+ ++ ++ VIVG R +L + +IY Sbjct: 239 ILDIVGNIVGKHDGIINFTIGQRKGIGIAYKEPLYVININAKTNEVIVGNRVALAIKKIY 298 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 L+ +N L DA F+K+RS+ V V ND G V+ E+ E G++ GQA Sbjct: 299 LKNLN-----LLSDAEEYNNNLFIKVRSTGRLVKAKVNLNDTGAEVNLEELETGISPGQA 353 Query: 365 CVFYTSDSNEARVLGGGII 383 CVFY+ + +VLGGG I Sbjct: 354 CVFYSKNQFGDKVLGGGWI 372 >gi|254510076|ref|ZP_05122143.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacteraceae bacterium KLH11] gi|221533787|gb|EEE36775.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacteraceae bacterium KLH11] Length = 381 Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust. Identities = 194/386 (50%), Positives = 256/386 (66%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + T LNSL K P + RVVVAMSGGVDSSVVAA L GYDV+GVTLQLY+ A Sbjct: 1 MALDAKTPLNSLGFAKPPSETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + HYV DYE F++AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL R L AD +ATGHYI+ ++ G +G + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETARDLEADCMATGHYIQRKM--GPNGSE---LHSAEDANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K++ R++A + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 TPEQLDFLRFPLGHLPSKDATREMAAQYGLAVADKPDSQDICFVPNGNYASVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IVH +G++L +HNG+I+YTIGQRRGLG+ + EPL+VV LD + +V+VGP+E L Sbjct: 236 AEPGEIVHADGRVLAQHNGVIHYTIGQRRGLGIGGLTEPLYVVKLDVDKKQVVVGPKEML 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + +REINWLGD F D + VK+RS++ P ++ +D V+ E Sbjct: 296 ATRTVPVREINWLGDAPFSSQ--DEWHVSVKVRSTRPPREAIIRPLSDTTAEVELLTPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 G++ GQACVFY ++ +R+ GGG I Sbjct: 354 GISPGQACVFY--ETGGSRIFGGGWI 377 >gi|255263925|ref|ZP_05343267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thalassiobium sp. R2A62] gi|255106260|gb|EET48934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thalassiobium sp. R2A62] Length = 378 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 199/378 (52%), Positives = 251/378 (66%), Gaps = 12/378 (3%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSL K P D RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A ++G+CC Sbjct: 7 LNSLGFAKAPADTRVVVAMSGGVDSSVVAAQLAEEGYDVVGVTLQLYDHGAALAKQGACC 66 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AG D++DARRV + HYV DYE F+ AVI FA SY AG TP+PC+ CN VKF D Sbjct: 67 AGLDIHDARRVAQEMGFPHYVLDYENTFKEAVIDEFADSYLAGATPVPCIRCNERVKFKD 126 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL + L AD +ATGHYI+ ++ GD G + C D RDQSYFLF+TT QL L Sbjct: 127 LLETAKDLDADCMATGHYIQRKM--GDHGA--ELHCA-TDANRDQSYFLFSTTLDQLDYL 181 Query: 189 RFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 RFPLG + K R LA + GL +ADK DSQDICFV G Y V++++ G A GDIV Sbjct: 182 RFPLGHLPSKNETRALAEKYGLSVADKPDSQDICFVPNGNYAAVIEKLRPGAAEPGDIVD 241 Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 +NG +LG HNG+I+YT+GQRRGLG+ + +PL+VV LD ++ +VIVGP++ L I +R Sbjct: 242 INGTVLGTHNGVIHYTVGQRRGLGIGGLADPLYVVKLDVDAKQVIVGPKDMLSTRTIPVR 301 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365 EINWLGD F+ +V VK+RS++ P V+ + V+ E GV+ GQAC Sbjct: 302 EINWLGDDAFDASVERNI--MVKVRSTRPPREAIVRPISATEATVELLTPEEGVSPGQAC 359 Query: 366 VFYTSDSNEARVLGGGII 383 VFY+ DS R+LGGG I Sbjct: 360 VFYSPDS--PRILGGGWI 375 >gi|84500833|ref|ZP_00999068.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oceanicola batsensis HTCC2597] gi|84390900|gb|EAQ03318.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oceanicola batsensis HTCC2597] Length = 382 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 195/386 (50%), Positives = 255/386 (66%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + + LNSL K P + RVVVAMSGGVDSSVVAA+L +GYDV+GVTLQLY+ A Sbjct: 1 MALDRTSDLNSLGFAKPPAETRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + + HYV DYE FR+AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGLDIHDARRVAEEMGFPHYVLDYENIFRDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL R L AD +ATGHYI+ ++ G + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETARDLDADCMATGHYIQRKM-----GAAGAELHSAADAARDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K R LA + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 TPEQLSFLRFPLGHLASKAETRALAAKYGLPVADKPDSQDICFVPNGNYASVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IV +G++LG H G+I+YTIGQRRGLG+ + +PL+VV LD ++ RV+VGP+E L Sbjct: 236 AEPGEIVDTSGRVLGHHEGVIHYTIGQRRGLGIGGLSDPLYVVRLDVDARRVVVGPKELL 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 ++ +REINWLG+G F D + VK+RS++ P ++ +D V+ E Sbjct: 296 ATRQVPVREINWLGEGAFTDQPER--EISVKVRSTRPPREAILRPVSDTEAVVELLTPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 GV+ GQACVFY ++ R+LGGG I Sbjct: 354 GVSPGQACVFY--ETGGTRILGGGWI 377 >gi|163794310|ref|ZP_02188282.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha proteobacterium BAL199] gi|159180478|gb|EDP64999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha proteobacterium BAL199] Length = 394 Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust. Identities = 211/392 (53%), Positives = 263/392 (67%), Gaps = 23/392 (5%) Query: 7 TRLNSLDLD-KNPKDMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64 T + LDL P+ R VVVAMSGGVDSSV AALLK GYDV+G+TLQLY+ A RK Sbjct: 3 TTVPDLDLGLPGPRSARRVVVAMSGGVDSSVTAALLKEAGYDVVGITLQLYDHGAAVARK 62 Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 G+CCAG D++DAR V + + + HYV DYE RFR +VI FA SY GETP+PCV CN+TV Sbjct: 63 GACCAGSDIHDARTVAERLGIPHYVLDYESRFRESVIDDFADSYLRGETPIPCVRCNQTV 122 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 KF DLL+ R LGA+ LATGHY+R L G DG + R +D +DQSYFLFATT +Q Sbjct: 123 KFRDLLTTARDLGAEALATGHYVRRVL--GPDGPE---LHRAVDPGKDQSYFLFATTPEQ 177 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 L LRFPLG M KE+ RD AR +GL + DK DSQDICFV G Y +VVK++ G A GD Sbjct: 178 LAFLRFPLGSMSKEATRDEARRLGLVVQDKPDSQDICFVPNGNYAEVVKKLRPGAADPGD 237 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGL---------GVAMGEPLFVVYLDKNSSRVIVGPR 295 IVHL+G +LG+H+G+I+YT+GQRRG+ G A +PL+VV LD ++ RVIVGPR Sbjct: 238 IVHLDGTVLGQHDGVIHYTVGQRRGIGVGGRRGAEGEAATDPLYVVRLDPDARRVIVGPR 297 Query: 296 ESLEVHRIYLREINWLG-DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFE 353 E+L + E+NWLG DG ++ G + VK+RS Q PV V + G V + Sbjct: 298 EALAAETVLAGEVNWLGADGGVPES---GARAQVKLRSVQAPVTATVYGDAAGGARVVLD 354 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIISG 385 + + GV++GQA VFY D ARVLGGG I G Sbjct: 355 QPQYGVSAGQAAVFYGEDG--ARVLGGGWIRG 384 >gi|259416977|ref|ZP_05740897.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Silicibacter sp. TrichCH4B] gi|259348416|gb|EEW60193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Silicibacter sp. TrichCH4B] Length = 381 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 194/386 (50%), Positives = 256/386 (66%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + +NSL K+P + RVVVAMSGGVDSSVVAA L GYDV+GVTLQLY+ A Sbjct: 1 MALDNEAPVNSLGFAKSPAETRVVVAMSGGVDSSVVAAYLAEQGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + HYV DYE F++AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL + L AD +ATGHYI+ ++ G+ G + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETAKDLEADCMATGHYIQRKM--GEHGPE---LHSAEDANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K++ R++A + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 TPEQLDFLRFPLGHLPSKDATREMAAQYGLSVADKPDSQDICFVPNGDYASVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G IVH +G++LG HNG+I+YTIGQRRGLG+ + EPL+VV LD + +VIVGP++ L Sbjct: 236 AEPGQIVHADGRVLGEHNGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDKKKVIVGPKDML 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 R+ +REINWLGD F + VK+RS++ P ++ +D V+ +E Sbjct: 296 ATRRVPVREINWLGDEPFTSRTE--WHLSVKVRSTRPPRDAIIRPISDTEAEVELFSAEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 G++ GQACVFY D N +R+ GGG I Sbjct: 354 GISPGQACVFY--DPNGSRIFGGGWI 377 >gi|260576792|ref|ZP_05844777.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacter sp. SW2] gi|259021044|gb|EEW24355.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacter sp. SW2] Length = 379 Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust. Identities = 195/378 (51%), Positives = 252/378 (66%), Gaps = 12/378 (3%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSL L K P++ RVVVAMSGGVDSSVVAA+L +GYDV+GVTLQLY+ A +KG+CC Sbjct: 7 LNSLGLAKPPQETRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAALAKKGACC 66 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AG+D++DARRV + + HYV DYE FR AVI FA +Y AG TP+PC+ CN VKF D Sbjct: 67 AGRDIHDARRVAEAMGFPHYVLDYENTFRAAVIDEFADAYLAGATPVPCIRCNERVKFKD 126 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R+L AD +ATGHYI+ +L G + D RDQSYFLF+TT +QL L Sbjct: 127 LLATARELDADCMATGHYIQRKL-----GLHGPELHSATDPARDQSYFLFSTTAEQLDYL 181 Query: 189 RFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 RFPLG + K R LA GL +ADK DSQDICFV G Y V++++ G A G IV Sbjct: 182 RFPLGHLASKAETRALAARYGLAVADKPDSQDICFVPNGDYAAVIEKLRPGAAEPGLIVG 241 Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 L+G LG H G+I+YTIGQRRGLG+ + +PL+V+ LD + +V+VGP+ +L R+ LR Sbjct: 242 LDGTPLGEHRGVIHYTIGQRRGLGIGGVADPLYVLRLDPETRQVVVGPKAALSTRRVPLR 301 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365 EINWLGD F+ + VK+RS++ P P V+ + V+ E G+++GQAC Sbjct: 302 EINWLGDAAFDSQ--PEWLLNVKVRSTRPPRPALVRPLSATEAEVELLAPEDGISAGQAC 359 Query: 366 VFYTSDSNEARVLGGGII 383 VFY + + RVLGGG I Sbjct: 360 VFYAPEGS--RVLGGGWI 375 >gi|149203838|ref|ZP_01880807.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseovarius sp. TM1035] gi|149142955|gb|EDM30997.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseovarius sp. TM1035] Length = 383 Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust. Identities = 196/378 (51%), Positives = 252/378 (66%), Gaps = 12/378 (3%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSL K+P + RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A +KG+CC Sbjct: 9 LNSLGFPKSPAETRVVVAMSGGVDSSVVAAHLAAEGYDVVGVTLQLYDHGAALAKKGACC 68 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AG D++DARRV + + HYV DYE FR+AVI FA SY AG TP+PC+ CN VKF D Sbjct: 69 AGVDIHDARRVAEEMGFPHYVLDYENIFRDAVIDEFADSYLAGATPVPCIRCNERVKFKD 128 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL R L AD +ATGHYI+ ++ G + + D RDQSYFLF+TT +QL L Sbjct: 129 LLETARDLEADCMATGHYIQRKM-----GVQGPELHSATDSARDQSYFLFSTTPEQLEFL 183 Query: 189 RFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 RFPLG + K++ R+LA + GL +ADK DSQDICFV G Y V++++ G A G+IVH Sbjct: 184 RFPLGHLPSKQATRELAAQYGLQVADKPDSQDICFVPNGNYASVIEKLRPGAAEPGEIVH 243 Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 +G+ILG H G+I+YTIGQRRGLG+ + EPL+VV LD ++ RVIVGP++ L + LR Sbjct: 244 ADGRILGTHEGVIHYTIGQRRGLGIGGLEEPLYVVRLDVDTRRVIVGPKDMLSTRTVPLR 303 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365 EINWLGD + VK+RS++ P ++ + V+ E GV+ GQAC Sbjct: 304 EINWLGDAPLTSQA--EWHISVKVRSTRPPREAVLRPISATEATVELLTPEEGVSPGQAC 361 Query: 366 VFYTSDSNEARVLGGGII 383 VFY ++ RVLGGG I Sbjct: 362 VFY--ETTGTRVLGGGWI 377 >gi|126729666|ref|ZP_01745479.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sagittula stellata E-37] gi|126709785|gb|EBA08838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sagittula stellata E-37] Length = 379 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 193/378 (51%), Positives = 254/378 (67%), Gaps = 12/378 (3%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSL L K P + RVVVAMSGGVDSSVVAA+LK +GYDV+GVTLQLY+ A +KG+CC Sbjct: 7 LNSLGLPKPPSETRVVVAMSGGVDSSVVAAMLKEEGYDVVGVTLQLYDHGAALAKKGACC 66 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AG D++DARRV + + HYV DYE F+ AVI FA SY G TP+PC+ CN VKF D Sbjct: 67 AGIDIHDARRVAEDMGFPHYVLDYENIFQEAVIEEFADSYLGGATPVPCIRCNERVKFKD 126 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL + L AD +ATGHYI+ + G R + D RDQSYFLF+TT +QL L Sbjct: 127 LLETAKDLEADCMATGHYIQRKT-----GARGPELHSAADAARDQSYFLFSTTPEQLDFL 181 Query: 189 RFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 RFPLG + K + R+LA GL +ADK DSQDICFV G Y V++++ G A G+IVH Sbjct: 182 RFPLGHLPSKAATRELAARYGLAVADKPDSQDICFVPDGNYAKVIEKLRPGAAEPGEIVH 241 Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 ++G++LG+H G+I+YTIGQRRGLG+ + EPL+VV LD + +V+VGP++ L I +R Sbjct: 242 IDGRVLGQHRGVIHYTIGQRRGLGIGGLSEPLYVVRLDVETRQVVVGPKDLLATRTIPVR 301 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365 EINWLGD F ++ VK+RS++ P ++ ++ V+ +E GV+ GQAC Sbjct: 302 EINWLGDAPFTSQAE--WQLDVKVRSTRPPREAIIRPLSETTGEVELVVAEEGVSPGQAC 359 Query: 366 VFYTSDSNEARVLGGGII 383 VFY D++ R+ GGG I Sbjct: 360 VFYAPDNS--RIFGGGWI 375 >gi|114768812|ref|ZP_01446438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha proteobacterium HTCC2255] gi|114549729|gb|EAU52610.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha proteobacterium HTCC2255] Length = 382 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 189/388 (48%), Positives = 260/388 (67%), Gaps = 11/388 (2%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 +++ LNS+ K+PKD RV+VAMSGGVDSSVVAA+L +GYDV+GVTLQLY+ A Sbjct: 4 IMIQNTKALNSMGFAKDPKDTRVLVAMSGGVDSSVVAAMLSEEGYDVVGVTLQLYDHGAA 63 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG+D+ DARRV + + HYV DYE +F+ +VI FA +Y AG TP+PC+ C Sbjct: 64 LAKKGACCAGRDIQDARRVAEEMGFPHYVLDYENKFKESVIDEFADAYLAGATPVPCIRC 123 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL + L AD +ATGHYI+ + ++GK + + D +RDQSYFLF+T Sbjct: 124 NERVKFRDLLETAKDLDADCMATGHYIQRFV---ENGKAE--LHKAADQDRDQSYFLFST 178 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 Q+QL LRFPLG +K K+ R+LA + GL +ADK DSQDICFV G Y V++++ Sbjct: 179 KQEQLDYLRFPLGHLKSKKDTRELAHKYGLPVADKPDSQDICFVPNGSYAAVIEKLRPEA 238 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE 299 A G IV +G +LG H GIINYT+GQRRGLG+ G+PL+V+ LD +S VIVGP+E+L Sbjct: 239 ANPGQIVSQDGAVLGEHKGIINYTVGQRRGLGIGGGDPLYVIKLDADSREVIVGPKEALA 298 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVG 358 + ++EINWLG+ F D+ V++RS++ P ++ ++ V+ +E G Sbjct: 299 TRTVLIKEINWLGEDNFLDSKERTLA--VRVRSTRSPKEAIIKPISETTATVELVMAEEG 356 Query: 359 VASGQACVFYTSDSNEARVLGGGIISGS 386 +A GQACVFY D R+ GGG I+ + Sbjct: 357 IAPGQACVFY--DIEGTRIYGGGWITNN 382 >gi|83951896|ref|ZP_00960628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseovarius nubinhibens ISM] gi|83836902|gb|EAP76199.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseovarius nubinhibens ISM] Length = 380 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 194/378 (51%), Positives = 256/378 (67%), Gaps = 12/378 (3%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSL L K P + RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A +KG+CC Sbjct: 7 LNSLGLPKPPSETRVVVAMSGGVDSSVVAAQLAEEGYDVVGVTLQLYDHGAALAKKGACC 66 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AG D++DARRV + + HYV DYE F++AVI FA SY AG TP+PC+ CN VKF D Sbjct: 67 AGIDIHDARRVAEEMGFPHYVLDYENIFQDAVIDEFADSYLAGATPVPCIRCNERVKFKD 126 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL R L AD +ATGHYI+ + G +G + C D RDQSYFLF+TT +QL L Sbjct: 127 LLQTARDLDADCMATGHYIQRKQ--GQNGP--ELHCA-TDANRDQSYFLFSTTPEQLEFL 181 Query: 189 RFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 RFPLG + K++ R+LA + GL +ADK DSQDICFV G Y V++++ G A G+IVH Sbjct: 182 RFPLGHLPSKDATRELAAKYGLSVADKPDSQDICFVPNGNYAAVIEKLRPGAAEPGEIVH 241 Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 +G++LG HNG+I+YTIGQRRGLG+ + +PL+VV LD + V+VGP+E L + +R Sbjct: 242 ADGRVLGTHNGVIHYTIGQRRGLGIGGLSDPLYVVKLDVDKKHVVVGPKEMLSTRNVPVR 301 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365 EINWLGD F+ ++ VK+RS++ P ++ + V+ E G++ GQAC Sbjct: 302 EINWLGDEPFDSRAE--WQVSVKVRSTRPPREAVIRPLSPTTAEVELLSPEDGISPGQAC 359 Query: 366 VFYTSDSNEARVLGGGII 383 VFY ++ +R+LGGG I Sbjct: 360 VFYETEG--SRILGGGWI 375 >gi|110679829|ref|YP_682836.1| tRNA-specific 2-thiouridylase MnmA [Roseobacter denitrificans OCh 114] gi|123065538|sp|Q166E3|MNMA_ROSDO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|109455945|gb|ABG32150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseobacter denitrificans OCh 114] Length = 380 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 189/386 (48%), Positives = 251/386 (65%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + + LNSL K P + RVVVAMSGGVDSSVVAA+L +GYDV+GVTLQLY+ A Sbjct: 1 MPLDPSPTLNSLGFAKPPAETRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + + HYV DYE F++AVI FA SY G TP+PC+ C Sbjct: 61 LAKKGACCAGLDIHDARRVSEKMGFPHYVLDYENIFKDAVIDEFAESYLGGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL + L AD +ATGHYI+ + G + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETAKDLDADCMATGHYIQRK-----SGPYGAELHSAADANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + KE R LA + GL +A+K DSQDICFV G Y V++++ Sbjct: 176 TPEQLAFLRFPLGHLPSKEDTRALAEKYGLSVANKPDSQDICFVPDGDYASVIRKLRPEA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A GDIV +G++L RH+G++NYTIGQRRGLG+ + PL+V+ LD + +V+VGP+ L Sbjct: 236 AAPGDIVDTDGRVLARHDGVVNYTIGQRRGLGIGGLATPLYVIKLDAEARQVVVGPKSML 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + +REINWLGD F+ D + VK+RS++ P ++ +D V+ E Sbjct: 296 STRTVPVREINWLGDEPFQSR--DAWHLAVKVRSTRPPTDAIIRPISDTEATVELTSPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 G++ GQACVFY +DS+ R+ GGG I Sbjct: 354 GISPGQACVFYDTDSS--RIYGGGWI 377 >gi|254451424|ref|ZP_05064861.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Octadecabacter antarcticus 238] gi|198265830|gb|EDY90100.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Octadecabacter antarcticus 238] Length = 379 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 198/378 (52%), Positives = 252/378 (66%), Gaps = 12/378 (3%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSL K P RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A +KG+CC Sbjct: 7 LNSLGFAKPPSQTRVVVAMSGGVDSSVVAAQLAEEGYDVVGVTLQLYDHGAALAKKGACC 66 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AG+D++DARRV + + HYV DYE FR AVI FA SY AG TP+PC+ CN VKF D Sbjct: 67 AGRDIHDARRVAEDMGFPHYVLDYENTFREAVIDEFADSYLAGATPVPCIRCNERVKFKD 126 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL + L AD +ATGHYI+ ++ G R + D RDQSYFLF+T +QL L Sbjct: 127 LLETAKDLDADCMATGHYIQRKM-----GARGAELHCAEDANRDQSYFLFSTKPEQLDYL 181 Query: 189 RFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 RFPLG + K++ R+LAR+ GL +ADK DSQDICFV G Y V++++ G A GDIV Sbjct: 182 RFPLGHLPSKDATRELARKYGLALADKPDSQDICFVPNGNYAAVIEKLRPGAAEPGDIVD 241 Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 +G +L +H G+I+YTIGQRRGLG+ + +PL+VV LD + VIVGP+E L + +R Sbjct: 242 TDGSVLAQHRGVIHYTIGQRRGLGIGGLADPLYVVKLDVDKKHVIVGPKEMLTTRTVPVR 301 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365 EINWLGD F DAV + VKIRS++ P+ V+ + ++ E GVA GQAC Sbjct: 302 EINWLGDDAF-DAVAE-RHISVKIRSTKPPMEAIVRPLSATTAEIELLTPEEGVAPGQAC 359 Query: 366 VFYTSDSNEARVLGGGII 383 VFY +DS+ R+ GGG I Sbjct: 360 VFYDNDSS--RIFGGGWI 375 >gi|159044055|ref|YP_001532849.1| tRNA-specific 2-thiouridylase MnmA [Dinoroseobacter shibae DFL 12] gi|205816871|sp|A8LK49|MNMA_DINSH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|157911815|gb|ABV93248.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dinoroseobacter shibae DFL 12] Length = 384 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 193/378 (51%), Positives = 246/378 (65%), Gaps = 12/378 (3%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSL K P + RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A +KG+CC Sbjct: 12 LNSLGFAKPPSETRVVVAMSGGVDSSVVAAELACEGYDVVGVTLQLYDHGAALAKKGACC 71 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AG+D++DARRV + + HYV DYE FR AVI FA SY G TP+PC+ CN VKF D Sbjct: 72 AGRDIHDARRVAEEMGFPHYVLDYENTFREAVIDEFADSYLGGATPVPCIRCNERVKFKD 131 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL R L AD +ATGHYI+ ++ G + + D RDQSYFLF+TTQ+QL L Sbjct: 132 LLETARDLEADCMATGHYIQRKM-----GPAKAELHSAADANRDQSYFLFSTTQEQLDYL 186 Query: 189 RFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 RFPLG + K R LA + GL +ADK DSQDICFV G Y V++++ G G+IV Sbjct: 187 RFPLGHLASKAETRALAAKHGLSVADKPDSQDICFVPNGDYASVIEKLRPGAGEPGEIVD 246 Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 ++G +LG H G+I+YTIGQRRGLG+ + PL+VV LD ++ RVIVGP+E+L + LR Sbjct: 247 MDGTVLGAHRGVIHYTIGQRRGLGIGGLETPLYVVKLDPDARRVIVGPKEALSTRHVPLR 306 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365 EINWLGD + VK+RS++ P ++ +D V+ E GV+ GQAC Sbjct: 307 EINWLGDAPLSSRAE--WPIAVKVRSTRPPRDAILRPISDTEATVELLTPEEGVSPGQAC 364 Query: 366 VFYTSDSNEARVLGGGII 383 VFY D + R+ GGG I Sbjct: 365 VFY--DPDGTRIFGGGWI 380 >gi|254465357|ref|ZP_05078768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacterales bacterium Y4I] gi|206686265|gb|EDZ46747.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacterales bacterium Y4I] Length = 381 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 194/386 (50%), Positives = 254/386 (65%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + T +NSL K P + RVVVAMSGGVDSSVVAA L GYDV+GVTLQLY+ A Sbjct: 1 MALDHNTTVNSLGFAKPPSETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + HYV DYE F++AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL + L AD +ATGHYI+ ++ G +G + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETAKDLEADCMATGHYIQRKM--GPNGPE---LHSAEDANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K++ R++A + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 TPEQLDYLRFPLGHLPSKDATREMAAQYGLAVADKPDSQDICFVPDGNYASVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IVH +G++LG H G+I+YTIGQRRGLG+ + EPL+VV LD + +V+VGP+E L Sbjct: 236 AEPGEIVHSDGRVLGSHEGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDKKQVVVGPKELL 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 I +REINWLGD F D + VK+RS++ P ++ D V+ E Sbjct: 296 ATRTIPVREINWLGDEPFTSR--DEWHLKVKVRSTRPPREAIIRPLTDTTAEVELLTPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 G++ GQACVFY S+ + R+ GGG I Sbjct: 354 GISPGQACVFYASEGS--RIFGGGWI 377 >gi|254475742|ref|ZP_05089128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ruegeria sp. R11] gi|214029985|gb|EEB70820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ruegeria sp. R11] Length = 381 Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust. Identities = 194/386 (50%), Positives = 252/386 (65%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M LNSL K P + RVVVAMSGGVDSSVVAA L GYDV+GVTLQLY+ A Sbjct: 1 MAQESNPPLNSLGFAKPPSETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + HYV DYE F++AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL R L AD +ATGHYI+ ++ G + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETARDLEADCMATGHYIQRKM-----GAHGPELHSAEDANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K++ R++A + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 TPEQLDYLRFPLGHLPSKDATREMAAQYGLAVADKPDSQDICFVPNGDYASVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IVH +G++LG+HNG+I+YTIGQRRGLG+ + EPL+VV LD ++ +V+VGP+E L Sbjct: 236 AEPGEIVHADGRVLGQHNGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDNKQVVVGPKEML 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 I +REINWLGD F K VK+RS++ P ++ ++ V+ E Sbjct: 296 ATRTIPVREINWLGDAPFTSQPEWHLK--VKVRSTRPPREAIIRPISETEAEVELLTPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 GV+ GQACVFY + + R+ GGG I Sbjct: 354 GVSPGQACVFYAGEGS--RIYGGGWI 377 >gi|89069527|ref|ZP_01156871.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oceanicola granulosus HTCC2516] gi|89044862|gb|EAR50952.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oceanicola granulosus HTCC2516] Length = 379 Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust. Identities = 196/378 (51%), Positives = 248/378 (65%), Gaps = 12/378 (3%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSL K P RVVVAMSGGVDSSVVAA L R+GYDV+GVTLQLY+ A RKG+CC Sbjct: 7 LNSLGFAKPPAQTRVVVAMSGGVDSSVVAAELAREGYDVVGVTLQLYDHGAALARKGACC 66 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AG+D++DARRV + + HYV DYE F++AVI FA SY AG TP+PC+ CN VKF D Sbjct: 67 AGRDIHDARRVAEEMGFPHYVLDYENVFKDAVIDEFADSYLAGATPVPCIRCNERVKFKD 126 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL R L AD +ATGHYI+ ++ G + D RDQSYFLF+TT +QL L Sbjct: 127 LLETARDLDADCMATGHYIQRKM-----GAHGPELHSAADAARDQSYFLFSTTPEQLAYL 181 Query: 189 RFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 RFPLG + K R LA GL +ADK DSQDICFV G Y V++++ G A GDIV Sbjct: 182 RFPLGHLASKAETRALAGRHGLPVADKPDSQDICFVPNGNYASVIEKLRPGAAEPGDIVD 241 Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 G++LG H G+I+YTIGQRRGLG+ + +PL+VV LD ++ RV+VGP+E L + +R Sbjct: 242 TEGRVLGTHRGLIHYTIGQRRGLGIGGLADPLYVVKLDVDTRRVVVGPKELLATRTVPVR 301 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365 EINWLGDG F + + VK+RS++ P ++ + V+ E GV+ GQAC Sbjct: 302 EINWLGDGGFLEG--GPREISVKVRSTRPPTEALLRPISATEAEVELLTPEEGVSPGQAC 359 Query: 366 VFYTSDSNEARVLGGGII 383 VFY ++ RVLGGG I Sbjct: 360 VFY--ETGGTRVLGGGWI 375 >gi|56696559|ref|YP_166916.1| tRNA-specific 2-thiouridylase MnmA [Ruegeria pomeroyi DSS-3] gi|81349989|sp|Q5LST9|MNMA_SILPO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|56678296|gb|AAV94962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ruegeria pomeroyi DSS-3] Length = 375 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 196/378 (51%), Positives = 252/378 (66%), Gaps = 12/378 (3%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSL K P + RVVVAMSGGVDSSVVAA L GYDV+GVTLQLY+ A +KG+CC Sbjct: 3 LNSLGFAKPPSETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAALAKKGACC 62 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AG D++DARRV + HYV DYE F++AVI FA SY AG TP+PC+ CN VKF D Sbjct: 63 AGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRCNERVKFKD 122 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL R L AD +ATGHYI+ ++ G +G + C D RDQSYFLF+TT +QL L Sbjct: 123 LLETARDLEADCMATGHYIQRKM--GPNGP--ELHCA-EDANRDQSYFLFSTTPEQLDYL 177 Query: 189 RFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 RFPLG + K++ R++A + GL +ADK DSQDICFV G Y V++++ G A G+IVH Sbjct: 178 RFPLGHLPSKDATREMAAQYGLAVADKPDSQDICFVPNGNYASVIEKLRPGAAEPGEIVH 237 Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 +G++LG H G+I+YTIGQRRGLG+ + EPL+VV LD + +V+VGP+E L I +R Sbjct: 238 ADGRVLGSHEGVIHYTIGQRRGLGIGGLSEPLYVVRLDVDRKQVVVGPKELLATRTIPVR 297 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365 EINWLGD F + VK+RS++ P V+ ++ V+ E GV+ GQAC Sbjct: 298 EINWLGDAPFTSR--PEWHLSVKVRSTRPPREAIVRPISETEAEVELLTPEEGVSPGQAC 355 Query: 366 VFYTSDSNEARVLGGGII 383 VFY SD + R+ GGG I Sbjct: 356 VFYESDGS--RIFGGGWI 371 >gi|209964264|ref|YP_002297179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodospirillum centenum SW] gi|259495835|sp|B6ISD0|MNMA_RHOCS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|209957730|gb|ACI98366.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodospirillum centenum SW] Length = 392 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 203/399 (50%), Positives = 253/399 (63%), Gaps = 23/399 (5%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSL DK P+D RVVVAMSGGVDSSV AALLK GYDV+G+TLQLY+ RKG+CC Sbjct: 1 MNSLGFDKAPQDTRVVVAMSGGVDSSVTAALLKEQGYDVVGITLQLYDHGLTVGRKGACC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+YDAR+V D I++ HYV DYE RF +VI FA SY GETP+PCV CN+ VKF D Sbjct: 61 AGQDIYDARQVADRIDIPHYVLDYESRFGQSVIDDFADSYLRGETPIPCVRCNQRVKFRD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R LGAD LATGHY +R G G + R D RDQSYFLFATT QL L Sbjct: 121 LLAQARDLGADCLATGHY--ARRVAGPTGP---ALHRGADPARDQSYFLFATTPAQLDYL 175 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFP+G + K R LA +GL +ADK DSQDICFV G Y VV+++ G G+IVHL Sbjct: 176 RFPIGHLPKSETRALAERLGLAVADKPDSQDICFVPAGNYAQVVEKLRPGAVEPGEIVHL 235 Query: 249 NGQILGRHNGIINYTI-----GQRRGLGVAMGE---PLFVVYLDKNSSRVIVGPRESLEV 300 +G++LGRH+G+I YT+ G GE PL+VV ++ + RV+VGPR +L Sbjct: 236 DGRVLGRHDGVIRYTVGQRRGLGIGGRRTPEGEELDPLYVVRVEPETRRVVVGPRTALAR 295 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGV 359 R+ +RE+NWLG D V VK+RS+Q +P V D G V + + GV Sbjct: 296 DRVLVREVNWLGGTDTADVPVT-----VKLRSAQPALPARVSLTADGGAVVTLTQPQYGV 350 Query: 360 ASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLS 398 A GQA VFY D RVLGGG I ++ S A+ ++ + Sbjct: 351 APGQAAVFYQGD----RVLGGGWIVRAEASPALADAPIP 385 >gi|163736308|ref|ZP_02143727.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Phaeobacter gallaeciensis BS107] gi|161390178|gb|EDQ14528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Phaeobacter gallaeciensis BS107] Length = 381 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 193/386 (50%), Positives = 254/386 (65%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M +LNSL K P + RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A Sbjct: 1 MAQDAHPQLNSLGFAKPPAETRVVVAMSGGVDSSVVAAHLADEGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + HYV DYE F++AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL R L AD +ATGHYI+ + DG + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETARDLEADCMATGHYIQRK-----DGPNGPELHSAEDANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K++ R++A + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 TPEQLDYLRFPLGHLPSKDATREMASQYGLAVADKPDSQDICFVPNGDYASVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IVH +G++LG H+G+I+YTIGQRRGLG+ + EPL+VV LD ++ +V+VGP+E L Sbjct: 236 AEPGEIVHSDGRVLGTHDGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDTKQVVVGPKELL 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 I +REINWLGD F D + VK+RS++ P ++ ++ V+ E Sbjct: 296 ATRTIPVREINWLGDEPFTSR--DEWHLKVKVRSTRPPRDAIIRPISETEAEVELLTPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 G++ GQACVFY + + R+ GGG I Sbjct: 354 GISPGQACVFYAEEGS--RIFGGGWI 377 >gi|163741163|ref|ZP_02148555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Phaeobacter gallaeciensis 2.10] gi|161385516|gb|EDQ09893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Phaeobacter gallaeciensis 2.10] Length = 381 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 193/386 (50%), Positives = 254/386 (65%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M +LNSL K P + RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A Sbjct: 1 MAQDAHPQLNSLGFAKPPAETRVVVAMSGGVDSSVVAAHLADEGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + HYV DYE F++AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL R L AD +ATGHYI+ + DG + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETARDLEADCMATGHYIQRK-----DGPNGPELHSAEDANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K++ R++A + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 TPEQLDYLRFPLGHLPSKDATREMASQYGLAVADKPDSQDICFVPNGDYASVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IVH +G++LG H+G+I+YTIGQRRGLG+ + EPL+VV LD ++ +V+VGP+E L Sbjct: 236 AEPGEIVHSDGRVLGTHDGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDTKQVVVGPKELL 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 I +REINWLGD F D + VK+RS++ P ++ ++ V+ E Sbjct: 296 ATRTIPVREINWLGDEPFTSR--DEWHLKVKVRSTRPPRDAIIRPISETEAEVELLTPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 G++ GQACVFY + + R+ GGG I Sbjct: 354 GISPGQACVFYAGEGS--RIFGGGWI 377 >gi|254437717|ref|ZP_05051211.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Octadecabacter antarcticus 307] gi|198253163|gb|EDY77477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Octadecabacter antarcticus 307] Length = 379 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 194/378 (51%), Positives = 250/378 (66%), Gaps = 12/378 (3%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSL K P RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A +KG+CC Sbjct: 7 LNSLGFAKPPSQTRVVVAMSGGVDSSVVAAQLAEEGYDVVGVTLQLYDHGAALAKKGACC 66 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AG+D++DARRV + + HYV DYE FR AVI FA SY AG TP+PC+ CN VKF D Sbjct: 67 AGRDIHDARRVAEDMGFPHYVLDYENTFREAVIDEFADSYLAGATPVPCIRCNERVKFKD 126 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL + L AD +ATGHYI+ ++ G R + D RDQSYFLF+T +QL L Sbjct: 127 LLETAKDLDADCMATGHYIQRKM-----GPRGAQLHCAEDANRDQSYFLFSTKPEQLEYL 181 Query: 189 RFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 RFPLG + K++ R+LAR+ GL +ADK DSQDICFV G Y V++++ G A G+IV Sbjct: 182 RFPLGHLPSKDATRELARKYGLALADKPDSQDICFVPNGNYAAVIEKLRPGAAEPGNIVD 241 Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 ++G +L +H G+I+YTIGQRRGLG+ + +PL+VV LD + VIVGP++ L + +R Sbjct: 242 IDGTVLAQHRGVIHYTIGQRRGLGIGGLADPLYVVKLDVDKKHVIVGPKDLLTTRTVPVR 301 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365 EINWLGD F+ VKIRS++ P+ V+ + ++ E GVA GQAC Sbjct: 302 EINWLGDDAFDSKTERHIS--VKIRSTKPPMEAIVRPLSATTAEIELLTPEEGVAPGQAC 359 Query: 366 VFYTSDSNEARVLGGGII 383 VFY SDS+ R+ GGG I Sbjct: 360 VFYDSDSS--RIFGGGWI 375 >gi|294084590|ref|YP_003551348.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664163|gb|ADE39264.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Puniceispirillum marinum IMCC1322] Length = 419 Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust. Identities = 188/397 (47%), Positives = 261/397 (65%), Gaps = 17/397 (4%) Query: 3 VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62 ++ + +NSL K P D RVVVAMSGGVDSSV AA+L +GY+VIG+TLQLY+ A + Sbjct: 27 TADLSAINSLGFAKAPADTRVVVAMSGGVDSSVTAAMLHDEGYEVIGITLQLYDHGVAVQ 86 Query: 63 RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122 KG+CCAG D++DAR V + + HYV DYE +FR+ V+ FA SY GETP+PCV CN+ Sbjct: 87 TKGACCAGIDIHDARTVSARLGIPHYVLDYESKFRDQVMEDFADSYLRGETPIPCVRCNQ 146 Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 TVKF+DLL+ ++LGAD LATGHY++ RL + ++ R +D +DQSYFLFATT Sbjct: 147 TVKFTDLLTTAQELGADCLATGHYVQ-RL----ETPAGPVLRRGIDASKDQSYFLFATTA 201 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 +Q+ LRFPLG + K+ RDLAR+ GL +++K DSQDICFV G+Y DVV+R+ G Sbjct: 202 EQMDYLRFPLGGLTKDETRDLARKYGLAVSEKPDSQDICFVPNGRYGDVVRRLRPGAVEA 261 Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-------MGEPLFVVYLDKNSSRVIVGPR 295 GDIVHL+G +LG+H G+I+YTIGQRRGLG+ PL+VV +D + RVIVGP+ Sbjct: 262 GDIVHLDGTVLGQHKGVIDYTIGQRRGLGIGGRKDADEADGPLYVVGIDAAAHRVIVGPQ 321 Query: 296 ESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEK 354 +L + ++L E +W+ G A V G ++R++ +P ++ + G V + Sbjct: 322 SALACYEVHLSETSWVAGG---GAPVAGHPVLARLRNTAPAMPAVLEAGEGGCAIVRLDD 378 Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDA 391 + G+A GQA Y + E +LGGG IS + + A Sbjct: 379 PQFGIAVGQAAAIYDAADPE-NLLGGGWISAAPLAGA 414 >gi|260433794|ref|ZP_05787765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Silicibacter lacuscaerulensis ITI-1157] gi|260417622|gb|EEX10881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Silicibacter lacuscaerulensis ITI-1157] Length = 381 Score = 367 bits (941), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 193/386 (50%), Positives = 254/386 (65%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + LNSL K P + RVVVAMSGGVDSSVVAA L GYDV+GVTLQLY+ A Sbjct: 1 MALDTEPPLNSLGFAKPPSETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + HYV DYE F++AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 VKF DLL + L AD +ATGHYI+ ++ G +G + C D RDQSYFLF+T Sbjct: 121 KERVKFKDLLETAKDLEADCMATGHYIQRKM--GPNGP--ELHCA-EDANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K++ R++A + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 TPEQLEFLRFPLGHLPSKDATREMAAQYGLSVADKPDSQDICFVPNGNYASVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IVH +G++LG+H+G+I+YTIGQRRGLG+ + EPL+VV LD + +V+VGP+E L Sbjct: 236 AEPGEIVHADGRVLGQHDGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDRKQVVVGPKELL 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 I +REINWLGD F + VK+RS++ P ++ D V+ E Sbjct: 296 ATRTIPVREINWLGDEPFTSQ--KEWHVSVKVRSTRPPREAIIRPLTDTTAEVELLTPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 GV+ GQACVFY ++ +R+ GGG I Sbjct: 354 GVSPGQACVFY--ETGGSRIFGGGWI 377 >gi|330813834|ref|YP_004358073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Pelagibacter sp. IMCC9063] gi|327486929|gb|AEA81334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Pelagibacter sp. IMCC9063] Length = 379 Score = 367 bits (941), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 187/381 (49%), Positives = 253/381 (66%), Gaps = 13/381 (3%) Query: 4 SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63 + +NSL K P++ +VVVAMSGGVDSS VA LLK Y VIG+TLQLY+ K K Sbjct: 7 TNTNSINSLGFAKAPEETKVVVAMSGGVDSSTVAGLLKEQNYHVIGITLQLYDYGKIGKT 66 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 G+CCAG+D+YDA+RV + +N+ H+VF+YE F+ VI FA SY GETP+PCV CN+T Sbjct: 67 SGTCCAGKDIYDAKRVSEQLNIEHHVFNYESLFKEEVIEKFADSYLKGETPIPCVSCNQT 126 Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183 VKF DL ++LGAD L TGHY++ +G+ + + M +P+D RDQSYFLF+TTQ+ Sbjct: 127 VKFRDLFKSAKKLGADALVTGHYVKR---LGNLNQSK--MYQPVDANRDQSYFLFSTTQE 181 Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243 QL LRFPL D+ K+ RDLA++M L +ADK DSQDICFV G Y V++++ G Sbjct: 182 QLDYLRFPLADLPKQETRDLAKKMNLSVADKPDSQDICFVPNGNYKSVIEKLRPESYDPG 241 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302 +IV L G++LGRHNGIIN+TIGQR+G+ V E +FV+ ++ + VIVG R+ L + + Sbjct: 242 NIVDLEGKVLGRHNGIINFTIGQRKGIKVGGQEEAIFVIKINPETKDVIVGSRQDLNITK 301 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362 I ++EIN+L D ++G F+K+RS+ +P V +D V + E GV+ G Sbjct: 302 IQVKEINFLCD----PKELEG-NFFIKVRSTGRLLPCRV--SDSATSVTLQAGESGVSPG 354 Query: 363 QACVFYTSDSNEARVLGGGII 383 QACVFY D RV GGG I Sbjct: 355 QACVFYRKDDKGMRVYGGGWI 375 >gi|126737635|ref|ZP_01753365.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseobacter sp. SK209-2-6] gi|126721028|gb|EBA17732.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseobacter sp. SK209-2-6] Length = 381 Score = 366 bits (940), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 193/386 (50%), Positives = 252/386 (65%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + T LNSL K P + RVVVAMSGGVDSSVVAA L GYDV+GVTLQLY+ A Sbjct: 1 MALDNDTPLNSLGFAKPPAETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + HYV DYE F++AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL + L AD +ATGHYI+ + G+ G + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETAKDLEADCMATGHYIQRMM--GEQGPE---LHSAEDANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K++ R++A + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 TPEQLDYLRFPLGHLPSKDATREMAAQYGLAVADKPDSQDICFVPDGNYASVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IVH +G++LG H G+I+YTIGQRRGLG+ + EPL+VV LD + +V+VGP++ L Sbjct: 236 AEPGEIVHSDGRVLGTHEGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDKKQVVVGPKDLL 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 I +REINWLGD F K VK+RS++ P ++ + V+ E Sbjct: 296 ATRTIPVREINWLGDAPFTSQKEWHLK--VKVRSTRPPREAIIRPLTETTAEVELLTPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 G++ GQACVFY S+ + R+ GGG I Sbjct: 354 GISPGQACVFYASEGS--RIFGGGWI 377 >gi|288958853|ref|YP_003449194.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Azospirillum sp. B510] gi|288911161|dbj|BAI72650.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Azospirillum sp. B510] Length = 391 Score = 365 bits (936), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 199/385 (51%), Positives = 256/385 (66%), Gaps = 16/385 (4%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSL L K P+D RVVVAMSGGVDSSV AA+L+ +GYDV+G+TLQLY+ A ++ G+CC Sbjct: 1 MNSLGLSKRPQDTRVVVAMSGGVDSSVTAAVLREEGYDVVGITLQLYDHGLALQKPGACC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+YDAR+V D I + HYV DYE RF V+ FA SY GETP+PCV CN+ VKF D Sbjct: 61 AGQDIYDARQVADRIGIPHYVLDYEGRFSQDVMDDFADSYLRGETPIPCVRCNQRVKFRD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R LGAD LATGHY+R R+ G R + R +D +DQSYFLFATT++QL L Sbjct: 121 LLNTARDLGADALATGHYVR-RIA----GPRGAELHRAVDPAKDQSYFLFATTREQLEFL 175 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K R LA GL++A K DSQDICFV G Y +VV ++ G GDIVH+ Sbjct: 176 RFPLGGLTKPETRALAGRHGLEVAAKPDSQDICFVPNGNYAEVVAKLRPGSVEPGDIVHV 235 Query: 249 NGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 +G++LGRH G+++YT+GQR+GLG+ E L+VV L+ RV+VGPR L + Sbjct: 236 DGRVLGRHKGVVHYTVGQRKGLGIGGIRGQEEEALYVVRLEPARRRVVVGPRRDLARSLV 295 Query: 304 YLREINWLG-DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVAS 361 +R++NWLG D + A G + VK+RS+Q P DG V+ + + G+A Sbjct: 296 MVRDVNWLGSDPAPDQADGAGLEVSVKLRSAQPAAPALWHAGPDGTARVELREPQHGIAP 355 Query: 362 GQACVFYTSDSNEARVLGGGIISGS 386 GQACV Y D RVLGGG ISG+ Sbjct: 356 GQACVVYQGD----RVLGGGWISGT 376 >gi|89054998|ref|YP_510449.1| tRNA-specific 2-thiouridylase MnmA [Jannaschia sp. CCS1] gi|122498420|sp|Q28PD8|MNMA_JANSC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|88864547|gb|ABD55424.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Jannaschia sp. CCS1] Length = 380 Score = 363 bits (933), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 191/386 (49%), Positives = 253/386 (65%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + + LNSL K P D RVVVAMSGGVDSS VAA L +GYDV+GVTLQLY+ A Sbjct: 1 MALDRSDGLNSLGFAKAPADTRVVVAMSGGVDSSAVAAQLADEGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG+D++DA RV +T+ HYV DYE F++AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGRDIHDAARVAETMGFPHYVLDYENVFKDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL + L AD +ATGHYI+ ++ G+ + + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETAKDLDADCMATGHYIQRKM-----GREKAELHSAADAARDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 Q+QL LRFPLG ++ K R LA + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 KQEQLDFLRFPLGHLESKAETRALAAKYGLSVADKPDSQDICFVPNGNYAAVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IV ++G +L H G+I+YTIGQRRGLG+ + +PL+VV LD ++ RVIVGP+E L Sbjct: 236 ADPGEIVDIDGNVLAMHRGVIHYTIGQRRGLGIGGLDDPLYVVKLDPDTRRVIVGPKEML 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + +REINWLGD F+ ++ VKIRS++ P ++ + V+ +E Sbjct: 296 STRTVPVREINWLGDTPFDSQ--QEWQMDVKIRSTRPPRGAVIRPVSATEAEVELIVAEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 GV+ GQACVFY + R+ GGG I Sbjct: 354 GVSPGQACVFYAPEGG--RIFGGGWI 377 >gi|126736443|ref|ZP_01752184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseobacter sp. CCS2] gi|126713981|gb|EBA10851.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseobacter sp. CCS2] Length = 379 Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 193/378 (51%), Positives = 249/378 (65%), Gaps = 12/378 (3%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSL K+P RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A +KG+CC Sbjct: 7 LNSLGFAKSPAQTRVVVAMSGGVDSSVVAAKLAEEGYDVVGVTLQLYDHGAALAKKGACC 66 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AG+D++DARRV + + HYV DYE FR AV+ FA SY G TP+PC+ CN VKF D Sbjct: 67 AGRDIHDARRVAEEMGFPHYVLDYENTFREAVMDEFADSYLGGATPVPCIRCNERVKFKD 126 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL + L AD +ATGHYI+ + G +G P +DQSYFLF+TTQ QL L Sbjct: 127 LLETAKDLDADCMATGHYIQRMM--GANGAELHSAADPT---KDQSYFLFSTTQDQLDYL 181 Query: 189 RFPLG-DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 RFPLG KE R LA + GL +ADK DSQDICFV G Y V++++ G A G+IV Sbjct: 182 RFPLGHHASKEETRALAAKYGLSVADKPDSQDICFVPNGDYAAVIEKLRPGAAEPGNIVD 241 Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 +G++LG H G+I+YTIGQRRGLG+ + +PL+VV LD + VIVGP++ L R+ +R Sbjct: 242 TDGKVLGTHKGVIHYTIGQRRGLGIGGLADPLYVVKLDVDRKEVIVGPKDLLATRRVPIR 301 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365 EINW+GDG D + + V++RS++ P ++ ++ V+ +E GV+ GQAC Sbjct: 302 EINWIGDGNLMD--MGERQIAVRVRSTRPPTDAVLRPISETEAEVELLVAEQGVSPGQAC 359 Query: 366 VFYTSDSNEARVLGGGII 383 VFY DS RVLGGG I Sbjct: 360 VFYDPDST--RVLGGGWI 375 >gi|126726432|ref|ZP_01742273.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacterales bacterium HTCC2150] gi|126704295|gb|EBA03387.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacterales bacterium HTCC2150] Length = 377 Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 193/380 (50%), Positives = 248/380 (65%), Gaps = 12/380 (3%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 T LNSL K P D RVVVAMSGGVDSSVVAA+L GYDV+GVTLQLY+ A +KG+ Sbjct: 4 TPLNSLGFAKAPADTRVVVAMSGGVDSSVVAAVLAEQGYDVVGVTLQLYDHGAALAKKGA 63 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 CCAG+D++DARRV +T+ HYV DYE +F+ AVI FA SY AG TP+PC+ CN VKF Sbjct: 64 CCAGRDIHDARRVAETMGFPHYVLDYENKFKEAVIDEFADSYLAGATPVPCIRCNERVKF 123 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 DLL + L AD +ATGHYI+ + G + + + D RDQSYFLF+T Q QL Sbjct: 124 KDLLETAKDLDADCMATGHYIQRMM-----GDTKAELHQAADGNRDQSYFLFSTKQDQLD 178 Query: 187 DLRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 LRFPLG + K R LA + GL +ADK DSQDICFV G Y V++++ G A GDI Sbjct: 179 YLRFPLGHLTSKAETRALAAKYGLPVADKPDSQDICFVPNGNYAAVIEKLRPGSAEPGDI 238 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 V +G ILG HNG+I+YTIGQRRGLG+ + +PL+VV LD + +V+VG +E L + Sbjct: 239 VDTDGNILGAHNGVIHYTIGQRRGLGIGGLADPLYVVRLDVDKRQVVVGAKELLATRTVP 298 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQ 363 L EINWLGD D + V++RS++ P V ++ V+ +E G+++GQ Sbjct: 299 LGEINWLGDEPLMSR--DEWHLDVRVRSTRPPRGAVLRPISETTATVELITAEEGISAGQ 356 Query: 364 ACVFYTSDSNEARVLGGGII 383 ACVFY D+ R+ GGG I Sbjct: 357 ACVFY--DTESTRIFGGGWI 374 >gi|83593359|ref|YP_427111.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodospirillum rubrum ATCC 11170] gi|123526416|sp|Q2RSS1|MNMA_RHORT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|83576273|gb|ABC22824.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodospirillum rubrum ATCC 11170] Length = 377 Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 192/384 (50%), Positives = 247/384 (64%), Gaps = 12/384 (3%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSC 67 ++ L P RVVVAMSGGVDSSV AALLK G+DV+G+T++LY+ K +C Sbjct: 1 MSQTPLSPPPVGGRVVVAMSGGVDSSVTAALLKEQGHDVVGLTMRLYDHGKPLGPGARTC 60 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 CAGQD++DARRV D + ++HYV DYE RFR VI PFA+SY GETP+PCV CN+TVKF Sbjct: 61 CAGQDIHDARRVADRLGIAHYVLDYESRFREDVIEPFAASYGRGETPIPCVLCNQTVKFR 120 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL+ LG LATGHY+R RL DG + R +D RDQSYFLFATT+ QL Sbjct: 121 DLLAAALDLGGTALATGHYVR-RL----DGPEGPRLYRAVDPGRDQSYFLFATTKGQLGR 175 Query: 188 LRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 L FPLG M K+ R +AR +GL + DK DSQDICFV G Y VV+R+ G+ G+IV Sbjct: 176 LLFPLGAMASKDETRAIARRLGLAVGDKPDSQDICFVPDGDYAKVVERLRPGVVEAGEIV 235 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 L+G +LG H G+I++T+GQRRG+G+ EPL+V+ LD + R++VGP +L I + Sbjct: 236 DLDGTVLGHHPGLIHFTVGQRRGVGIGGSAEPLYVIALDTATHRLVVGPHAALARREIAV 295 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVASGQ 363 +NWLG+G E G + +KIR + P P +F V ++ GVA GQ Sbjct: 296 SGLNWLGEG--EGPASAGTRARIKIRHASPPFPGQIFPGAAAGEARVVLDEPAHGVAPGQ 353 Query: 364 ACVFYTSDSNEARVLGGGIISGSK 387 A VFY D N+ARVLGGG I S+ Sbjct: 354 AAVFYGLDDNDARVLGGGWIGASR 377 >gi|83942322|ref|ZP_00954783.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfitobacter sp. EE-36] gi|83846415|gb|EAP84291.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfitobacter sp. EE-36] Length = 380 Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 189/386 (48%), Positives = 250/386 (64%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + LNSL K P D RVVVAMSGGVDSSVVAA+L +GYDV+GVTLQLY+ A Sbjct: 1 MPLDRTPPLNSLGFAKAPADTRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 RKG+CCAG D++DARRV +++ HYV DYE F++AVI FA SY G TP+PC+ C Sbjct: 61 LARKGACCAGIDIHDARRVAESMGFPHYVLDYENVFKDAVIDEFADSYLGGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL + L AD +ATGHYI+ ++ G DG + C D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETAKDLDADCMATGHYIQRKM--GPDGA--ELHCA-ADANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K R LA + GL +ADK DSQDICFV G Y V++++ Sbjct: 176 TPEQLDYLRFPLGHLPSKNDTRALAAKYGLSVADKPDSQDICFVPNGDYASVIRKLRPEA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IV +G +L +H+G+INYTIGQRRGLG+ + +PL+VV LD ++++V+VGP+ L Sbjct: 236 ANPGNIVDTDGNVLAQHDGVINYTIGQRRGLGIGGLADPLYVVKLDADNAQVVVGPKSML 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + ++EINWLGD + V++RS++ P ++ +D V+ E Sbjct: 296 ATRTVPVKEINWLGDTPLMSQ--SEWPIAVRVRSTRPPTDAILRPISDTEATVELLTPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 G++ GQACVFY D R+ GGG I Sbjct: 354 GISPGQACVFY--DPESTRIFGGGWI 377 >gi|310816020|ref|YP_003963984.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ketogulonicigenium vulgare Y25] gi|308754755|gb|ADO42684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ketogulonicigenium vulgare Y25] Length = 379 Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 195/378 (51%), Positives = 252/378 (66%), Gaps = 12/378 (3%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSL + K + RVVVAMSGGVDSSVVAA LKR+GYDV+GVTLQLY+ A +KG+CC Sbjct: 7 LNSLGIAKPVAETRVVVAMSGGVDSSVVAAQLKREGYDVVGVTLQLYDHGAALAKKGACC 66 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AG+D++DARRV + + HYV DYE FR AVI FA SY AG TP+PC+ CN VKF D Sbjct: 67 AGRDIHDARRVAEEMGFPHYVLDYENTFREAVIDEFADSYLAGATPVPCIRCNERVKFKD 126 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL + L AD +ATGHYI+ ++ GD + D RDQSYFLF+TT +QL L Sbjct: 127 LLQTAKDLDADCMATGHYIQRKM--GDYAPE---LHSAADPNRDQSYFLFSTTPEQLAYL 181 Query: 189 RFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 RFPLG +K K R LA E GL +ADK DSQDICFV G Y V++++ A G+IV Sbjct: 182 RFPLGHLKSKAETRALAAEFGLGVADKPDSQDICFVPDGNYAAVIEKLRPDAAQPGEIVD 241 Query: 248 LNGQILGRHNGIINYTIGQ-RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 +NG++LG+H G+I+YT+GQ R +GEP++VV LD ++ RVIVGP+ +L R+ LR Sbjct: 242 MNGKVLGQHPGVIHYTVGQRRGLGVGGLGEPVYVVRLDVDTRRVIVGPKSALATRRVPLR 301 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365 E+NWLGDG F D + V++RSS+ P ++ + V+ E GV+ GQAC Sbjct: 302 EVNWLGDGAFTDMAERHIR--VRVRSSRPPAEAILRPLSATTAEVELLTPEEGVSIGQAC 359 Query: 366 VFYTSDSNEARVLGGGII 383 VFY ++ + RVLGGG I Sbjct: 360 VFYETEGS--RVLGGGWI 375 >gi|329849969|ref|ZP_08264815.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Asticcacaulis biprosthecum C19] gi|328841880|gb|EGF91450.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Asticcacaulis biprosthecum C19] Length = 395 Score = 362 bits (930), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 190/371 (51%), Positives = 252/371 (67%), Gaps = 7/371 (1%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P R+V AMSGGVDS+VVAALL GY+VIGVTLQLY+ A K+ G+CCAGQD++DAR Sbjct: 28 PAGARIVAAMSGGVDSTVVAALLAAAGYEVIGVTLQLYDHGAALKKTGACCAGQDIHDAR 87 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + I + HYV DYE RFR+ VI FA SY GETP+PC+ CN++VKF+DLL V R LG Sbjct: 88 MASEKIGIPHYVLDYESRFRDQVIEEFADSYLRGETPVPCIRCNQSVKFNDLLQVARDLG 147 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A+ +ATGHY+ +DG + R D RDQSYFLFATT++QL LRFPL + K Sbjct: 148 AEAMATGHYVERS---DEDGVVS--LRRAADQSRDQSYFLFATTREQLDYLRFPLAGIPK 202 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VRD+A ++GL +A K DSQDICFV +GKY +++ R+ +G I H++G++LG H+ Sbjct: 203 PQVRDIAVQLGLKVAQKPDSQDICFVPEGKYTNLIDRLRPQGREKGAIRHIDGRVLGTHD 262 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI YTIGQRRGL VA+GEPLFVV +D ++ ++VGPRE+L + L+E NWLG Sbjct: 263 GITGYTIGQRRGLNVAVGEPLFVVKIDPDAKEILVGPREALLTRALTLKETNWLGSETDV 322 Query: 318 DAVVDGFK-CFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 DA K ++RS++ PV + G+ V+F+ +E GVA GQACV Y + + R Sbjct: 323 DAAAGLRKPVLARVRSTRPPVAARLVAGVSGIEVEFDDAEEGVAPGQACVLYDVE-DSGR 381 Query: 377 VLGGGIISGSK 387 VLGGG I+ ++ Sbjct: 382 VLGGGFIAATR 392 >gi|163731902|ref|ZP_02139349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseobacter litoralis Och 149] gi|161395356|gb|EDQ19678.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseobacter litoralis Och 149] Length = 380 Score = 362 bits (929), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 186/386 (48%), Positives = 249/386 (64%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + + LNSL K P RVVVAMSGGVDSSVVAA+L +GYDV+GVTLQLY+ A Sbjct: 1 MPLDPSPMLNSLGFAKPPAQTRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + + HYV DYE F++AVI FA SY G TP+PC+ C Sbjct: 61 LAKKGACCAGLDIHDARRVSEKMGFPHYVLDYENIFKDAVIDEFAESYLGGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL + L AD +ATGHYI+ + G + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETAKDLDADCMATGHYIQRK-----SGPCGAELHSAADANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + KE R LA + GL +A+K DSQDICFV G Y V++++ Sbjct: 176 TPEQLAFLRFPLGHLPSKEDTRALAEKYGLSVANKPDSQDICFVPNGDYASVIRKLRPEA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IV ++G++L H+G+IN+TIGQRRGLG+ + PL+V+ LD + +V+VGP+ L Sbjct: 236 AAPGNIVDVDGRVLATHDGVINFTIGQRRGLGIGGLATPLYVIKLDAQTRQVVVGPKSML 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + +REINWLGD + D + VK+RS++ P ++ ++ V+ E Sbjct: 296 STRTVPVREINWLGDEPLQSR--DEWHLAVKVRSTRPPTDAIIRPISETEATVELTSPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 GV+ GQACVFY +DS+ R+ GGG I Sbjct: 354 GVSPGQACVFYDTDSS--RIYGGGWI 377 >gi|294010267|ref|YP_003543727.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Sphingobium japonicum UT26S] gi|292673597|dbj|BAI95115.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Sphingobium japonicum UT26S] Length = 373 Score = 362 bits (928), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 195/373 (52%), Positives = 240/373 (64%), Gaps = 21/373 (5%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 DL P R+VVAMSGGVDSSVVAAL R G + IGVTLQLY+ A R GSCCAGQ Sbjct: 10 FDLKAPPDARRIVVAMSGGVDSSVVAALAARTGAETIGVTLQLYDHGAAVGRTGSCCAGQ 69 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DAR V D I ++HYVFDYE RFR++VI FA Y AG TP+PCV CN VKF+DL Sbjct: 70 DIRDARAVADRIGIAHYVFDYESRFRDSVIADFADEYMAGRTPIPCVKCNMGVKFTDLFQ 129 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + R LGAD LATGHY+R +G + + R D RDQSYFLFATTQ QL LRFP Sbjct: 130 IARDLGADCLATGHYVRRV-----EGPQGAELHRAADSARDQSYFLFATTQAQLDYLRFP 184 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG + K VR++A E+GL +A K DSQDICFV G Y +V+++ GDIVH++G+ Sbjct: 185 LGGLPKPQVREIAAELGLSVALKPDSQDICFVPDGDYAKIVRKLRPDADEGGDIVHIDGR 244 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 ++G H G+I+YT+GQR+GL + EPL+VV LD + RVIVGP+ +L V L +INW Sbjct: 245 LMGTHKGMIHYTVGQRKGLEIGGQAEPLYVVRLDAEARRVIVGPKAALAVSAARLSDINW 304 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 LG G F + K+RS PVP ++ G + F+ E GVA GQA V Y Sbjct: 305 LG-GDFAGPLT------AKVRSMAKPVPARLE----GDRLVFDAPEYGVAPGQAAVLYAG 353 Query: 371 DSNEARVLGGGII 383 D RVLGGG I Sbjct: 354 D----RVLGGGWI 362 >gi|83953541|ref|ZP_00962262.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfitobacter sp. NAS-14.1] gi|83841486|gb|EAP80655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfitobacter sp. NAS-14.1] Length = 380 Score = 362 bits (928), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 189/386 (48%), Positives = 250/386 (64%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + LNSL K P D RVVVAMSGGVDSSVVAA+L +GYDV+GVTLQLY+ A Sbjct: 1 MPLDRTPPLNSLGFAKAPADTRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 RKG+CCAG D++DARRV +++ HYV DYE F++AVI FA SY G TP+PC+ C Sbjct: 61 LARKGACCAGIDIHDARRVAESMGFPHYVLDYENVFKDAVIDEFADSYLGGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL + L AD +ATGHYI+ ++ G DG + C D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETAKDLDADCMATGHYIQRKM--GLDGA--ELHCA-ADANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K R LA + GL +ADK DSQDICFV G Y V++++ Sbjct: 176 TPEQLDYLRFPLGHLPSKNDTRALAAKYGLSVADKPDSQDICFVPNGDYASVIRKLRPEA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IV +G +L +H+G+INYTIGQRRGLG+ + +PL+VV LD ++++V+VGP+ L Sbjct: 236 ANPGNIVDTDGNVLAQHDGVINYTIGQRRGLGIGGLADPLYVVKLDADNAQVVVGPKSML 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + ++EINWLGD + V++RS++ P ++ +D V+ E Sbjct: 296 ATRTVPVKEINWLGDTPLMSQ--SEWPIAVRVRSTRPPTDAILRPISDTEATVELLTPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 G++ GQACVFY D R+ GGG I Sbjct: 354 GISPGQACVFY--DPESTRIFGGGWI 377 >gi|229586563|ref|YP_002845064.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia africae ESF-5] gi|259495837|sp|C3PN11|MNMA_RICAE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|228021613|gb|ACP53321.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia africae ESF-5] Length = 365 Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 184/367 (50%), Positives = 242/367 (65%), Gaps = 13/367 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +VVAMSGGVDSS VAA+L G++VIG+TLQLY+ A +K +CCAGQD+YDA+ Sbjct: 7 KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 66 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + HYV DYE +F+ +VI F SY GETPLPCV CN++VKF DL+ R+LGA Sbjct: 67 VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 126 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY+R GD+G + +D +DQSYFLF TT++QL LRFPLG + K+ Sbjct: 127 DKLATGHYVRK--INGDNGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGLTKD 181 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R LA + GL++ADK DSQDICF+ G Y V+ +I + G I+H+NG LG H+G Sbjct: 182 ETRKLASKFGLEVADKPDSQDICFIPDGNYKSVINKIRPNSSESGKIIHVNGFELGEHSG 241 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 IINYTIGQRRGLG+A EPL+VV +D + V VGP +L V +R++NWL D + ++ Sbjct: 242 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNVVYVGPESALNVQEFIIRDVNWLADEIKDN 301 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + VKIRS++ P + + DD + V F E VA GQACV Y ARV Sbjct: 302 ---EKLEVAVKIRSTRPPRLAEISKFGDDKMKVKFLCEEKAVAPGQACVIYAG----ARV 354 Query: 378 LGGGIIS 384 LGGG I+ Sbjct: 355 LGGGWIT 361 >gi|119386805|ref|YP_917860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paracoccus denitrificans PD1222] gi|205816904|sp|A1B9H0|MNMA_PARDP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|119377400|gb|ABL72164.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paracoccus denitrificans PD1222] Length = 389 Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 193/381 (50%), Positives = 251/381 (65%), Gaps = 14/381 (3%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 + +NSL K P RVVVAMSGGVDSSVVAA+L GYDVIGVTLQLY+ A +KG+ Sbjct: 15 STVNSLGFPKPPAQTRVVVAMSGGVDSSVVAAMLAAQGYDVIGVTLQLYDHGAALAKKGA 74 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 CCAGQD++DARRV + I HYV DYE +FR +VI FA +Y AG TP+PC+ CN VKF Sbjct: 75 CCAGQDIHDARRVAERIGFPHYVLDYENKFRESVIEEFADAYLAGATPVPCIRCNERVKF 134 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 DLL R+L AD +ATGHYIR RL +G G + P RDQSYFLF+TTQ+QL Sbjct: 135 RDLLQTARELDADCMATGHYIR-RL-MGPKGAELHMAADPA---RDQSYFLFSTTQEQLD 189 Query: 187 DLRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 LRFPLG + K R LA + GL +ADK DSQDICFV G Y V++++ G A G+I Sbjct: 190 FLRFPLGGLASKAETRALAAQYGLAVADKPDSQDICFVPNGDYASVIEKLRPGAADPGEI 249 Query: 246 VHLNGQILGRHNGIINYTIGQ-RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 V ++G +LG H G+I+YTIGQ R +G+PL+VV L+ ++ RV+VGP+++L + Sbjct: 250 VDMDGNVLGSHRGVIHYTIGQRRGLGIGGLGDPLYVVRLEPDTRRVVVGPKQALATKIVP 309 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363 + E+NWLGD FED + +IRS++ P P ++ ++ E GV+ GQ Sbjct: 310 VTEVNWLGDEPFEDEIA----VTARIRSTRPPRPAILRVTGKHRAEIELLDPEEGVSPGQ 365 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 ACVFY ++ + RVLGGG IS Sbjct: 366 ACVFYATEGS--RVLGGGWIS 384 >gi|205821554|sp|A8F172|MNMA_RICM5 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 365 Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 184/367 (50%), Positives = 243/367 (66%), Gaps = 13/367 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +VVAMSGGVDSS VAA+L G++VIG+TLQLY+ A +K +CCAGQD+YDA+ Sbjct: 7 KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 66 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + HYV DYE +F+ +VI F SY GETPLPCV CN++VKF DL+ R+LGA Sbjct: 67 VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVRCNKSVKFRDLIKTARELGA 126 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY+R GD+G + +D +DQSYFLF TT++QL LRFPLG + K+ Sbjct: 127 DKLATGHYVRK--INGDNGAE---LYTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGLTKD 181 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R LA + GL++ADK DSQDICFV G Y V+ +I + G I+H+NG LG H+G Sbjct: 182 ETRKLASKFGLEVADKPDSQDICFVPDGNYKSVINKIRPNSSESGKIIHVNGFKLGEHSG 241 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 IINYTIGQRRGLG+A EPL+VV +D + V VGP +L V +R++NWL D + ++ Sbjct: 242 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDN 301 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + VKIRS++ P + + DD + V F +E VA GQACV Y + RV Sbjct: 302 ---EKLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCAEKAVAPGQACVIYAGE----RV 354 Query: 378 LGGGIIS 384 LGGG I+ Sbjct: 355 LGGGWIT 361 >gi|307293549|ref|ZP_07573393.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sphingobium chlorophenolicum L-1] gi|306879700|gb|EFN10917.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sphingobium chlorophenolicum L-1] Length = 376 Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 192/367 (52%), Positives = 239/367 (65%), Gaps = 21/367 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+VVAMSGGVDSSVVAAL R G + IGVTLQLY+ A R GSCCAGQD+ DAR V D Sbjct: 23 RIVVAMSGGVDSSVVAALAARTGAETIGVTLQLYDHGAAVGRTGSCCAGQDIRDARAVAD 82 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I ++HYVFDYE RFR +VI FA Y AG TP+PCV CN VKF+DL + R LGAD L Sbjct: 83 RIGIAHYVFDYESRFRESVIADFADEYMAGRTPIPCVKCNMGVKFTDLFQIARDLGADCL 142 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R +G + + R D RDQSYFLFATTQ QL LRFPLG + K VR Sbjct: 143 ATGHYVRRV-----EGPQGAELHRAADPARDQSYFLFATTQAQLDYLRFPLGGLPKPQVR 197 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A E+GL +A K DSQDICFV G Y +V+++ GDIVH++G+++G H G+I+ Sbjct: 198 EIAAELGLSVAMKPDSQDICFVPDGDYAKIVRKLRPDADAGGDIVHIDGRLMGTHKGMIH 257 Query: 262 YTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YT+GQR+GL + EPL+VV LD + RVIVGP+ +L V L +INWLG G F + Sbjct: 258 YTVGQRKGLEIGGQAEPLYVVRLDAEARRVIVGPKAALAVSAARLSDINWLG-GDFSGPL 316 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 K+RS PVP ++ G + F+ E GVA GQA V Y D RVLGG Sbjct: 317 T------AKVRSMAKPVPARLE----GDRLLFDAPEYGVAPGQAAVLYAGD----RVLGG 362 Query: 381 GIISGSK 387 G I+ ++ Sbjct: 363 GWIAATE 369 >gi|157828286|ref|YP_001494528.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia rickettsii str. 'Sheila Smith'] gi|166235079|sp|A8GRJ5|MNMA_RICRS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205822057|sp|B0BWZ7|MNMA_RICRO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|157800767|gb|ABV76020.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia rickettsii str. 'Sheila Smith'] Length = 365 Score = 360 bits (924), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 184/367 (50%), Positives = 241/367 (65%), Gaps = 13/367 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +VVAMSGGVDSS VAA+L G++VIG+TLQLY+ A +K +CCAGQD+YDA+ Sbjct: 7 KQSTIVVAMSGGVDSSAVAAMLNEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 66 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + HYV DYE +F+ +VI F SY GETPLPCV CN++VKF DL+ R+LGA Sbjct: 67 VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 126 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY+R GD+G + +D +DQSYFLF TT++QL LRFPLG + K Sbjct: 127 DKLATGHYVRK--INGDNGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGLTKG 181 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R LA + GL++ADK DSQDICF+ G Y V+ +I + G I+H+NG LG H+G Sbjct: 182 ETRKLASKFGLEVADKPDSQDICFIPDGNYKSVINKIRPNSSESGKIIHVNGFELGEHSG 241 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 IINYTIGQRRGLG+A EPL+VV +D + V VGP +L V +R++NWL D + ++ Sbjct: 242 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDN 301 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + VKIRS++ P + + DD + V F E VA GQACV Y ARV Sbjct: 302 ---EKLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCKEKAVAPGQACVIYAG----ARV 354 Query: 378 LGGGIIS 384 LGGG I+ Sbjct: 355 LGGGWIT 361 >gi|71083529|ref|YP_266248.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Pelagibacter ubique HTCC1062] gi|91762051|ref|ZP_01264016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Pelagibacter ubique HTCC1002] gi|123646720|sp|Q4FME4|MNMA_PELUB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71062642|gb|AAZ21645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Pelagibacter ubique HTCC1062] gi|91717853|gb|EAS84503.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Pelagibacter ubique HTCC1002] Length = 371 Score = 360 bits (924), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 178/379 (46%), Positives = 252/379 (66%), Gaps = 13/379 (3%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 T+LNS+ + K+PKD V+VAMSGGVDSS VAA++K +GY+VIG+TL+LYN K + Sbjct: 2 TKLNSIGIAKDPKDTLVIVAMSGGVDSSTVAAMMKNEGYNVIGITLKLYNDSKETASSKQ 61 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 CCAGQD+ DA+RV D + + H + Y+ +F+ VI F SY GETP+PCV CN+TVKF Sbjct: 62 CCAGQDIMDAKRVADKLKIEHKILYYQNKFKEGVIDNFIDSYLNGETPIPCVQCNKTVKF 121 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 +DL ++L AD L TGHY++S K M R +DL RDQSYFLF TT+ QL Sbjct: 122 TDLFEEAKRLNADALVTGHYVKSITE-----KDNTDMYRGIDLNRDQSYFLFNTTKDQLN 176 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 LRFPLG++ K+ R++ARE+ L++ADK DSQDICFV G Y V+++ +G+I Sbjct: 177 FLRFPLGNLLKDETRNIARELDLNVADKPDSQDICFVPNGDYASVIEKFRPNSFSKGNIK 236 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 ++NG+++G H+GIINYTIGQR+G+GV+ PL+VV + + + +IVG +E L +I L+ Sbjct: 237 NMNGEVIGVHDGIINYTIGQRKGIGVSDKNPLYVVKIIADKNEIIVGAKEHLVKTKINLK 296 Query: 307 EINWLGDGLFEDAVVDGFK--CFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 ++N + + + FK FVK+RS+ + + ND V+ + E G+A GQA Sbjct: 297 DLNIITNDQ------NDFKNELFVKVRSTGRLIKAKIDINDTNANVNLLEEEHGIAPGQA 350 Query: 365 CVFYTSDSNEARVLGGGII 383 CVFY ++N +VLGGG I Sbjct: 351 CVFYAKNNNGYKVLGGGWI 369 >gi|94498089|ref|ZP_01304652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sphingomonas sp. SKA58] gi|94422524|gb|EAT07562.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sphingomonas sp. SKA58] Length = 368 Score = 360 bits (924), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 194/373 (52%), Positives = 244/373 (65%), Gaps = 22/373 (5%) Query: 17 NPKDMR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 P+D R +VVAMSGGVDSSVVAAL + G +VIGVTLQLY+ A R GSCCAGQD+ D Sbjct: 9 EPRDQRRIVVAMSGGVDSSVVAALAAKTGAEVIGVTLQLYDHGAAVGRTGSCCAGQDIRD 68 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 AR V D I ++HYVFDYE RFR++VI FA Y AG TP+PCV CN VKF+DL + R Sbjct: 69 ARAVADRIGIAHYVFDYESRFRDSVIADFADEYMAGRTPIPCVKCNMGVKFTDLFQIARD 128 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD LATGHY+R +G + R D RDQSYFLFATTQ QL LRFPLG + Sbjct: 129 LGADCLATGHYVRRV-----EGAAGAELHRAADPARDQSYFLFATTQAQLDYLRFPLGGL 183 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K VR++A E+GL +A K DSQDICFV G Y +V+++ G+IVH++G+++GR Sbjct: 184 PKSQVREIAAELGLSVALKPDSQDICFVPDGDYAKIVRKLRPDADEGGEIVHVDGRVMGR 243 Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H G+I+YT+GQR+GL + EPL+VV LD + RVIVGP+ +L V L +INWLG G Sbjct: 244 HRGLIHYTVGQRKGLEIGGQAEPLYVVRLDAEARRVIVGPKAALAVSGALLSDINWLG-G 302 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 F + K+RS PVP ++ G + F+ E GVA GQA V Y D Sbjct: 303 DFAGPLT------AKVRSMARPVPARLE----GDRLIFDAPEYGVAPGQAAVLYAGD--- 349 Query: 375 ARVLGGGIISGSK 387 RVLGGG I+ ++ Sbjct: 350 -RVLGGGWIASTQ 361 >gi|165932990|ref|YP_001649779.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia rickettsii str. Iowa] gi|165908077|gb|ABY72373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia rickettsii str. Iowa] Length = 370 Score = 360 bits (924), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 184/367 (50%), Positives = 241/367 (65%), Gaps = 13/367 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +VVAMSGGVDSS VAA+L G++VIG+TLQLY+ A +K +CCAGQD+YDA+ Sbjct: 12 KQSTIVVAMSGGVDSSAVAAMLNEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 71 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + HYV DYE +F+ +VI F SY GETPLPCV CN++VKF DL+ R+LGA Sbjct: 72 VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 131 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY+R GD+G + +D +DQSYFLF TT++QL LRFPLG + K Sbjct: 132 DKLATGHYVRK--INGDNGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGLTKG 186 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R LA + GL++ADK DSQDICF+ G Y V+ +I + G I+H+NG LG H+G Sbjct: 187 ETRKLASKFGLEVADKPDSQDICFIPDGNYKSVINKIRPNSSESGKIIHVNGFELGEHSG 246 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 IINYTIGQRRGLG+A EPL+VV +D + V VGP +L V +R++NWL D + ++ Sbjct: 247 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDN 306 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + VKIRS++ P + + DD + V F E VA GQACV Y ARV Sbjct: 307 ---EKLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCKEKAVAPGQACVIYAG----ARV 359 Query: 378 LGGGIIS 384 LGGG I+ Sbjct: 360 LGGGWIT 366 >gi|15892333|ref|NP_360047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia conorii str. Malish 7] gi|20455354|sp|Q92IL0|MNMA_RICCN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|15619478|gb|AAL02948.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia conorii str. Malish 7] Length = 370 Score = 360 bits (924), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 183/367 (49%), Positives = 242/367 (65%), Gaps = 13/367 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +VVAMSGGVDSS VAA+L G++VIG+TLQLY+ A +K +CCAGQD+YDA+ Sbjct: 12 KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 71 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + HYV DYE +F+ +VI F SY GETPLPCV CN++VKF DL+ R+LGA Sbjct: 72 VANKLGIPHYVLDYENKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 131 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY+R GD+G + +D +DQSYFLF TT++QL LRFPLG + K+ Sbjct: 132 DKLATGHYVRK--INGDNGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGLTKD 186 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R LA + GL++ADK DSQDICF+ G Y V+ +I + G I+H+NG LG H+G Sbjct: 187 ETRKLASKFGLEVADKPDSQDICFIPDGNYKSVINKIRPNSSESGKIIHVNGFELGEHSG 246 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 IINYTIGQRRGLG+A EPL+VV +D + V VGP +L V +R++NWL D + ++ Sbjct: 247 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDN 306 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + VKIRS++ P + + DD + V F E VA GQACV Y + RV Sbjct: 307 ---EKLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCEEKAVAPGQACVIYAGE----RV 359 Query: 378 LGGGIIS 384 LGGG I+ Sbjct: 360 LGGGWIT 366 >gi|103487513|ref|YP_617074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sphingopyxis alaskensis RB2256] gi|123379667|sp|Q1GRI1|MNMA_SPHAL RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|98977590|gb|ABF53741.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sphingopyxis alaskensis RB2256] Length = 382 Score = 360 bits (924), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 192/366 (52%), Positives = 244/366 (66%), Gaps = 18/366 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD R+VVAMSGGVDSSVVAAL R G +VIGVTLQLY+ +KR G+CCAGQD+ DAR Sbjct: 27 KDRRIVVAMSGGVDSSVVAALAARSGAEVIGVTLQLYDHGAKAKRVGACCAGQDIRDARA 86 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + H+V D+E RFR+ VI FA Y AG TP+PCV CN VKF+DL + R+LGA Sbjct: 87 VADRLGFVHHVHDHESRFRDTVIDQFADEYLAGRTPIPCVRCNMGVKFTDLFQLARELGA 146 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY+R +G DG M R +D RDQSYFLFATTQ+QL LRFPLG ++K Sbjct: 147 DCLATGHYVRR--VMGPDGAE---MHRAVDPARDQSYFLFATTQEQLDFLRFPLGGLEKN 201 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++AR++GL +A K DSQDICFV G Y +V+++ +GDIVH++G +LG H G Sbjct: 202 VVREIARDLGLGVAGKPDSQDICFVPDGDYASLVRKLRPEAEDQGDIVHVDGTVLGAHKG 261 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 +I+YT+GQRRG+ + EPL+VV L+ + +VIVGPR +L V L + NWL D Sbjct: 262 LIHYTVGQRRGIDIGGQAEPLYVVRLNAATKQVIVGPRRALAVSGARLGDANWLAD---- 317 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 V+G K+RS PVP V N + F E GVA GQA V Y + ++++RV Sbjct: 318 ---VEGRDVLAKVRSMAKPVPARVTAN----RLRFLSPEYGVAPGQAAVLYDA-ADKSRV 369 Query: 378 LGGGII 383 LGGG I Sbjct: 370 LGGGWI 375 >gi|157964381|ref|YP_001499205.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia massiliae MTU5] gi|157844157|gb|ABV84658.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia massiliae MTU5] Length = 374 Score = 360 bits (923), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 184/367 (50%), Positives = 243/367 (66%), Gaps = 13/367 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +VVAMSGGVDSS VAA+L G++VIG+TLQLY+ A +K +CCAGQD+YDA+ Sbjct: 16 KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 75 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + HYV DYE +F+ +VI F SY GETPLPCV CN++VKF DL+ R+LGA Sbjct: 76 VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVRCNKSVKFRDLIKTARELGA 135 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY+R GD+G + +D +DQSYFLF TT++QL LRFPLG + K+ Sbjct: 136 DKLATGHYVRK--INGDNGAE---LYTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGLTKD 190 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R LA + GL++ADK DSQDICFV G Y V+ +I + G I+H+NG LG H+G Sbjct: 191 ETRKLASKFGLEVADKPDSQDICFVPDGNYKSVINKIRPNSSESGKIIHVNGFKLGEHSG 250 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 IINYTIGQRRGLG+A EPL+VV +D + V VGP +L V +R++NWL D + ++ Sbjct: 251 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDN 310 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + VKIRS++ P + + DD + V F +E VA GQACV Y + RV Sbjct: 311 ---EKLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCAEKAVAPGQACVIYAGE----RV 363 Query: 378 LGGGIIS 384 LGGG I+ Sbjct: 364 LGGGWIT 370 >gi|238650755|ref|YP_002916609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia peacockii str. Rustic] gi|259495838|sp|C4K1W0|MNMA_RICPU RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|238624853|gb|ACR47559.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia peacockii str. Rustic] Length = 365 Score = 359 bits (922), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 184/367 (50%), Positives = 241/367 (65%), Gaps = 13/367 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +VVAMSGGVDSS VAA+L G++VIG+TLQLY+ A +K SCCAGQD+YDA+ Sbjct: 7 KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNSCCAGQDIYDAKM 66 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + HYV DYE +F+ +VI F SY GETPLPCV CN++VKF DL+ R+LGA Sbjct: 67 VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 126 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY+R GD+G + +D +DQSYFLF TT++QL LRFPLG + K Sbjct: 127 DKLATGHYVRK--INGDNGAE---LHTGLDPAKDQSYFLFMTTKEQLEYLRFPLGGLTKG 181 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R LA + GL++ADK DSQDICF+ G Y V+ +I + G I+H+NG LG H+G Sbjct: 182 ETRKLASKFGLEVADKPDSQDICFIPDGNYKSVINKIRPNSSESGKIIHVNGFELGEHSG 241 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 IINYTIGQRRGLG+A EPL+VV +D + V VGP +L V +R++NWL D + ++ Sbjct: 242 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDN 301 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + VKIRS++ P + + DD + V F E VA GQACV Y + RV Sbjct: 302 ---EKLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCEEKAVAPGQACVIYAGE----RV 354 Query: 378 LGGGIIS 384 LGGG I+ Sbjct: 355 LGGGWIT 361 >gi|34580653|ref|ZP_00142133.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia sibirica 246] gi|28262038|gb|EAA25542.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia sibirica 246] Length = 365 Score = 359 bits (922), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 183/367 (49%), Positives = 241/367 (65%), Gaps = 13/367 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +VVAMSGGVDSS VAA+L G++VIG+TLQLY+ A +K +CCAGQD+YDA+ Sbjct: 7 KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 66 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + HYV DYE +F+ +VI F SY GETPLPCV CN++VKF DL+ R+LGA Sbjct: 67 VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 126 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY+R GD+G + +D +DQSYFLF TT++QL LRFPLG K+ Sbjct: 127 DKLATGHYVRK--INGDNGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGFTKD 181 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R LA + GL++ADK DSQDICF+ G Y V+ +I + G I+H+NG LG H+G Sbjct: 182 ETRKLASKFGLEVADKPDSQDICFIPDGNYKSVINKIRPNSSESGKIIHVNGFELGEHSG 241 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 IINYTIGQRRGLG+A EPL+VV +D + V VGP +L V +R++NWL D + ++ Sbjct: 242 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDN 301 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + VKIRS++ P + + DD + V F E VA GQACV Y + RV Sbjct: 302 ---EKLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCEEKAVAPGQACVIYAGE----RV 354 Query: 378 LGGGIIS 384 LGGG I+ Sbjct: 355 LGGGWIT 361 >gi|67458888|ref|YP_246512.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia felis URRWXCal2] gi|75536671|sp|Q4UM73|MNMA_RICFE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|67004421|gb|AAY61347.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia felis URRWXCal2] Length = 365 Score = 358 bits (920), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 183/367 (49%), Positives = 241/367 (65%), Gaps = 13/367 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +VVAMSGGVDSS VAA+L G++VIG+TLQLY+ A +K +CCAGQD+YDA+ Sbjct: 7 KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 66 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + HYV DYE +F+ +VI F SY GETPLPCV CN++VKF DL+ R+LGA Sbjct: 67 VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 126 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 LATGHY+R GD+G + +D +DQSYFLF TT++QL L FPLG + K+ Sbjct: 127 AQLATGHYVRK--VNGDNGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLSFPLGGLTKD 181 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R LA + GL++ADK DSQDICFV G Y V+ +I G + G I+H+NG LG H+G Sbjct: 182 ETRRLASKFGLEVADKPDSQDICFVPDGNYKSVINKIRPGASESGKIIHVNGFELGEHSG 241 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 IINYTIGQRRGLG+A EPL+VV +D + V VGP +L V ++ INWL D + ++ Sbjct: 242 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALHVQEFIIKNINWLADEIKDN 301 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + VKIRS++ P + + +DD + V F E VA GQACV Y + RV Sbjct: 302 ---EKLEVEVKIRSTRPPRLAEISKLDDDKMKVKFLSEEKAVAPGQACVIYAGE----RV 354 Query: 378 LGGGIIS 384 LGGG I+ Sbjct: 355 LGGGWIT 361 >gi|241761211|ref|ZP_04759299.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|283856328|ref|YP_162504.2| tRNA-specific 2-thiouridylase MnmA [Zymomonas mobilis subsp. mobilis ZM4] gi|292495018|sp|Q5NPG7|MNMA_ZYMMO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|241374118|gb|EER63615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|283775325|gb|AAV89393.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Zymomonas mobilis subsp. mobilis ZM4] Length = 370 Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 194/375 (51%), Positives = 249/375 (66%), Gaps = 25/375 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 +DK R+VVAMSGGVDSSVVAAL K G + IG+TLQLY+ A RKGSCCAG+ Sbjct: 5 FQIDKPKSAQRIVVAMSGGVDSSVVAALAKATGAETIGITLQLYDHGAAVGRKGSCCAGK 64 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DAR V + I + HYVFDYE F+ +VI F S Y AG TP+PC+ CN+ VKF+DLL+ Sbjct: 65 DIRDARAVAEKIGIPHYVFDYENNFKESVIDDFVSEYVAGRTPVPCIRCNQGVKFTDLLN 124 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 V R+LGAD LATGHY+R RL D R M R +D RDQSYFLFATT++QL LRFP Sbjct: 125 VARELGADCLATGHYVR-RLVNND----RVEMHRALDPARDQSYFLFATTKEQLDYLRFP 179 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG + K VR++A E+GL +A K+DSQDICFV G Y +V+ GDIV + G+ Sbjct: 180 LGGLPKPKVREMAAELGLSVAMKADSQDICFVPDGDYARIVEEKCPESGQGGDIVDMQGR 239 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 +LG+H+G+I++T+GQRRGL + EPL+V+ LD +++VGPR++L V + ++E+NW Sbjct: 240 VLGKHSGLIHFTVGQRRGLEIGGQKEPLYVIRLDPAKKQLVVGPRQALAVAKAEIKEVNW 299 Query: 311 LGDGLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 L VDGF + VKIRS+ PV DG + FEK E GV+ GQA VFY Sbjct: 300 L---------VDGFDREMQVKIRSAAKPVSARF----DGKELVFEKPEYGVSPGQAAVFY 346 Query: 369 TSDSNEARVLGGGII 383 D +VLGGG I Sbjct: 347 DGD----QVLGGGWI 357 >gi|157803967|ref|YP_001492516.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia canadensis str. McKiel] gi|166235078|sp|A8EZE8|MNMA_RICCK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|157785230|gb|ABV73731.1| hypothetical protein A1E_04020 [Rickettsia canadensis str. McKiel] Length = 368 Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 179/363 (49%), Positives = 242/363 (66%), Gaps = 13/363 (3%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 +VVAMSGGVDS+ VAA+L GY+VIG+TLQLY+ A +K +CCAGQD+YDA+ V + Sbjct: 11 IVVAMSGGVDSAAVAAMLHAQGYNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKMVANK 70 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + HYV DYE +F+ +VI F SY GETPLPCV CN++VKF DL+ ++LGA LA Sbjct: 71 LGIPHYVLDYESKFKESVIENFVDSYLQGETPLPCVQCNKSVKFKDLIKTAKELGAAQLA 130 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY+R GD+G I P +DQSYFLF TT++QL L FPLG K+ R Sbjct: 131 TGHYVRK--INGDNGAELHIGIDPA---KDQSYFLFTTTKEQLDYLSFPLGWFTKDETRK 185 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA + GL++A+K DSQDICFV G Y +V+ +I G + +G I+H+NG LG H+GIINY Sbjct: 186 LASKFGLEVANKPDSQDICFVPDGNYKNVINKIRPGSSKKGKIIHVNGFELGEHSGIINY 245 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQRRGLG+A EPL+V+ +D N++ V VGP +L + ++++NWL D + ++ + Sbjct: 246 TIGQRRGLGIAYNEPLYVIKIDPNNNIVYVGPESALNMQEFIIKDVNWLADEIKDN---E 302 Query: 323 GFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + VKIRS++ P + + DD + V F E VA GQACV Y + RVLGGG Sbjct: 303 KLEVAVKIRSTRLPSLAEISKLGDDKMKVKFLSEEKAVAPGQACVIYDGE----RVLGGG 358 Query: 382 IIS 384 I+ Sbjct: 359 WIT 361 >gi|260752750|ref|YP_003225643.1| tRNA-specific 2-thiouridylase MnmA [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552113|gb|ACV75059.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 370 Score = 357 bits (915), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 194/375 (51%), Positives = 248/375 (66%), Gaps = 25/375 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 +DK R+VVAMSGGVDSSVVAAL K G + IG+TLQLY+ A RKGSCCAG+ Sbjct: 5 FQIDKPKSAQRIVVAMSGGVDSSVVAALAKATGAETIGITLQLYDHGAAVGRKGSCCAGK 64 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DAR V + I + HYVFDYE F+ +VI F S Y AG TP+PC+ CN+ VKF+DLL+ Sbjct: 65 DIRDARAVAEKIGIPHYVFDYENNFKESVIDDFVSEYVAGRTPVPCIRCNQGVKFTDLLN 124 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 V R+LGAD LATGHY+R RL D R M R +D RDQSYFLFATT++QL LRFP Sbjct: 125 VARELGADCLATGHYVR-RLVNND----RVEMHRALDPARDQSYFLFATTKEQLDYLRFP 179 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG + K VR++A E+GL +A K+DSQDICFV G Y +V+ GDIV + G+ Sbjct: 180 LGGLPKPKVREMAAELGLSVAMKADSQDICFVPDGDYARIVEEKCPESGQGGDIVDMQGR 239 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 +LG+H+G+I++T+GQRRGL + EPL+V+ LD +++VGPR++L V + ++E+NW Sbjct: 240 VLGKHSGLIHFTVGQRRGLEIGGQKEPLYVIRLDPAKKQLVVGPRQALAVAKAEIKEVNW 299 Query: 311 LGDGLFEDAVVDGFK--CFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 L VDGF VKIRS+ PV DG + FEK E GV+ GQA VFY Sbjct: 300 L---------VDGFDRGMQVKIRSAAKPVSARF----DGKELVFEKPEYGVSPGQAAVFY 346 Query: 369 TSDSNEARVLGGGII 383 D +VLGGG I Sbjct: 347 DGD----QVLGGGWI 357 >gi|239947878|ref|ZP_04699631.1| tRNA-methyltransferase [Rickettsia endosymbiont of Ixodes scapularis] gi|239922154|gb|EER22178.1| tRNA-methyltransferase [Rickettsia endosymbiont of Ixodes scapularis] Length = 370 Score = 356 bits (913), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 182/367 (49%), Positives = 239/367 (65%), Gaps = 13/367 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +VVAMSGGVDSS VAA+L G++VIG+TLQLY+ A +K +CCAGQD+YDA+ Sbjct: 12 KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 71 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + HYV YE +F+ +VI F SY GETPLPCV CN++VKF DL+ R+LGA Sbjct: 72 VANKLGIPHYVLGYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 131 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY+R GD+G + +D +DQSYFLF TT++QL L FPLG + K+ Sbjct: 132 DKLATGHYVRK--INGDNGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLSFPLGGLTKD 186 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R LA + GL++ADK DSQDICFV G Y V+ +I G + G IVH+NG LG H+G Sbjct: 187 ETRKLASKFGLEVADKPDSQDICFVPDGNYKSVINKIRPGSSESGKIVHVNGFELGEHSG 246 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 IINYTIGQRRGLG+A +PL+VV +D + V VGP +L V ++++NWL D E Sbjct: 247 IINYTIGQRRGLGIAYNKPLYVVKIDPKDNIVYVGPESALHVQEFIIKDVNWLAD---ET 303 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + VKIRS++ P + + DD + + F E VA GQACV Y + RV Sbjct: 304 KDNEKLEVAVKIRSTRPPRLAEISKLGDDKMKIKFLSEEKAVAPGQACVIYAGE----RV 359 Query: 378 LGGGIIS 384 LGGG I+ Sbjct: 360 LGGGWIT 366 >gi|91205346|ref|YP_537701.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia bellii RML369-C] gi|157826947|ref|YP_001496011.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia bellii OSU 85-389] gi|122425762|sp|Q1RJ52|MNMA_RICBR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|166235077|sp|A8GVU7|MNMA_RICB8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|91068890|gb|ABE04612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia bellii RML369-C] gi|157802251|gb|ABV78974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia bellii OSU 85-389] Length = 367 Score = 355 bits (910), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 181/372 (48%), Positives = 246/372 (66%), Gaps = 13/372 (3%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ N + +VVAMSGGVDSSVVA +L GY+VIG+TLQLY+ A+ +K +CCAGQD+ Sbjct: 2 INSNDRQSTLVVAMSGGVDSSVVAGILCEQGYNVIGITLQLYDHGMATAKKNACCAGQDI 61 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 YDA+ V + + + HYV DYE +F+ +VI F SY GETPLPCV CN++VKF DL+ Sbjct: 62 YDAKMVANKLGMPHYVLDYESKFKESVIDNFVDSYLRGETPLPCVQCNKSVKFRDLIKTA 121 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 ++LGAD L TGHY+R GD+G + P+ +DQSYFLFATT++QL L FPLG Sbjct: 122 KELGADKLVTGHYVRK--INGDNGPELHMGLDPL---KDQSYFLFATTKEQLEYLDFPLG 176 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 + K+ R LA + GL++ADK DSQDICFV G Y +V+ +I + G I+H+NG L Sbjct: 177 ALTKDETRKLASKFGLEVADKPDSQDICFVPDGNYKNVINKIRPNASESGKILHINGFEL 236 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G H+GIINYTIGQRRGLG++ EPL+V+ +D NS+ V VGP +L V ++++NWL Sbjct: 237 GTHSGIINYTIGQRRGLGISYHEPLYVIKIDPNSNIVYVGPESALNVQEFVIKDVNWLA- 295 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDS 372 G +D + + VK+RS++ P + + D + V F E VA GQACV Y Sbjct: 296 GSLKDG--EKLEVSVKVRSTRPPRLAEISKLEGDRMKVKFLSEEKAVAPGQACVIY---- 349 Query: 373 NEARVLGGGIIS 384 + RVLGGG I+ Sbjct: 350 DGTRVLGGGWIT 361 >gi|163747144|ref|ZP_02154500.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oceanibulbus indolifex HEL-45] gi|161379705|gb|EDQ04118.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oceanibulbus indolifex HEL-45] Length = 380 Score = 352 bits (903), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 187/386 (48%), Positives = 245/386 (63%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + + LNSL K P D RVVVAMSGGVDSSVVAA+L +GYDV+GVTLQLY+ A Sbjct: 1 MALDQTPPLNSLGFAKAPADTRVVVAMSGGVDSSVVAAMLADEGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D+ DARRV + + HYV DYE F++AVI FA SY G TP+PC+ C Sbjct: 61 LAKKGACCAGVDIQDARRVAEEMGFPHYVLDYENVFKDAVIDEFADSYLGGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL + L AD +ATGHYI+ ++ G++G D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETAKDLEADCMATGHYIQRKM--GENGPELHAAA---DGNRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T++QL LRFPLG + K+ R LA + GL +ADK DSQDICFV G Y V++++ Sbjct: 176 TEEQLDYLRFPLGHLPSKDDTRALAAKYGLVVADKPDSQDICFVPNGDYAAVIRKLRPEA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IV G +L +H G+I+YTIGQRRGLG+ + +PL+VV LD V+VGP+ L Sbjct: 236 ADPGNIVDTEGNVLAKHEGVIHYTIGQRRGLGIGGLADPLYVVKLDAERKEVVVGPKSML 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 +I +REINWLGD + V++RS++ P ++ + V+ +E Sbjct: 296 ATRKIPVREINWLGDEPLTSR--SEWNITVRVRSTRPPRDAILRPISATEAEVELLTAEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 GV+ GQACVFY D R+ GGG I Sbjct: 354 GVSPGQACVFY--DPESTRIFGGGWI 377 >gi|126462045|ref|YP_001043159.1| tRNA-specific 2-thiouridylase MnmA [Rhodobacter sphaeroides ATCC 17029] gi|205816923|sp|A3PJ71|MNMA_RHOS1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|126103709|gb|ABN76387.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacter sphaeroides ATCC 17029] Length = 379 Score = 352 bits (902), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 191/383 (49%), Positives = 246/383 (64%), Gaps = 12/383 (3%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSL K P RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A +KG+CC Sbjct: 6 LNSLGFAKPPAATRVVVAMSGGVDSSVVAAELAAEGYDVVGVTLQLYDHGAALAKKGACC 65 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AG+D++DARRV +T+ HYV DYE FR AVI FA +Y AG TP+PC+ CN VKF D Sbjct: 66 AGRDIHDARRVAETMGFPHYVLDYENTFREAVIDEFADAYLAGATPVPCIRCNERVKFKD 125 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL + L AD +ATGHYI+ ++ G G + C D RDQSYFLF+TT +QL L Sbjct: 126 LLQTAKDLDADCMATGHYIQRKM--GPAGP--ELHCA-ADAARDQSYFLFSTTPEQLAFL 180 Query: 189 RFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 RFPLG + K R LA GL +ADK DSQDICFV G Y +V++++ G A G+IV Sbjct: 181 RFPLGHLASKAETRALAARHGLPVADKPDSQDICFVPNGNYAEVIQKLRPGAADPGEIVD 240 Query: 248 LNGQILGRHNGIINYTIGQ-RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 L+G++LG H G+I+YTIGQ R +G+PL+VV LD +VIVGP+E+L + +R Sbjct: 241 LSGRVLGEHRGVIHYTIGQRRGLGIGGLGDPLYVVRLDPERRQVIVGPKEALSTRIVPVR 300 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365 EINWLGD ++ K+RS++ P ++ +D V+ E GV+ GQAC Sbjct: 301 EINWLGDAPLTSR--SEWQVMAKVRSTRAPREAVIRPLSDTEAEVELIAPEDGVSPGQAC 358 Query: 366 VFYTSDSNEARVLGGGIISGSKR 388 VFY ++R+LGGG I R Sbjct: 359 VFYA--PGDSRILGGGWIWRGAR 379 >gi|239787342|emb|CAX83819.1| tRNA-specific 2-thiouridylase MnmA [uncultured bacterium] Length = 366 Score = 352 bits (902), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 187/367 (50%), Positives = 241/367 (65%), Gaps = 17/367 (4%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 PK RV VAMSGGVDSSVVAAL+ ++GY V+G+TLQLY+ +A ++ +CCAGQD+YDAR Sbjct: 14 PKGARVAVAMSGGVDSSVVAALMHKEGYQVVGITLQLYDHGEAIQKTKTCCAGQDIYDAR 73 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV + I HYV DYE F+ VI FA SY GETP+PCV CN+ +KF DLL R L Sbjct: 74 RVSEKIGFHHYVLDYESIFKEEVIDDFADSYLRGETPIPCVQCNQKIKFRDLLRTARDLD 133 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 L TGHY+++ +G+ + + D RDQSYFLF+T QQ L LRFPLG + K Sbjct: 134 CAALVTGHYVQNI-----NGE----LHQAHDPSRDQSYFLFSTKQQDLNYLRFPLGGIPK 184 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 R LA E GL+IA+K DSQDICFV G Y V ++ + GDIV+L+G+ILG+H Sbjct: 185 SQTRILAEEFGLEIANKPDSQDICFVPNGNYAQTVAKLRPEALIAGDIVNLDGKILGQHQ 244 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GII+YTIGQRRGLG+A +PL+VV LD ++VIVGPR +L V I ++++NW D Sbjct: 245 GIIHYTIGQRRGLGIASVDPLYVVALDPIHNQVIVGPRSALAVTHIPVQDVNWFVD---L 301 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 GF C VK+RS+ + VQ D+ V ++ E GV+SGQACVFY + R Sbjct: 302 SKYPCGFYCTVKVRSTGAALSAKVQMIDESHALVTLDQPEYGVSSGQACVFY----DGTR 357 Query: 377 VLGGGII 383 V+GGG I Sbjct: 358 VIGGGWI 364 >gi|77463173|ref|YP_352677.1| tRNA-specific 2-thiouridylase MnmA [Rhodobacter sphaeroides 2.4.1] gi|123592152|sp|Q3J358|MNMA_RHOS4 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|77387591|gb|ABA78776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacter sphaeroides 2.4.1] Length = 379 Score = 350 bits (899), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 190/383 (49%), Positives = 244/383 (63%), Gaps = 12/383 (3%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSL K P RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A +KG+CC Sbjct: 6 LNSLGFAKPPAVTRVVVAMSGGVDSSVVAAELAAEGYDVVGVTLQLYDHGAALAKKGACC 65 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AG+D++DARRV +T+ HYV DYE FR AVI FA +Y AG TP+PC+ CN VKF D Sbjct: 66 AGRDIHDARRVAETMGFPHYVLDYENTFREAVIDEFADAYLAGATPVPCIRCNERVKFKD 125 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL + L AD +ATGHYI+ ++ G G P RDQSYFLF+TT +QL L Sbjct: 126 LLQTAKDLDADCMATGHYIQRKM--GPAGPELHSAADPA---RDQSYFLFSTTPEQLAFL 180 Query: 189 RFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 RFPLG + K R LA GL +ADK DSQDICFV G Y +V++++ G A G+IV Sbjct: 181 RFPLGHLASKAETRALAARHGLPVADKPDSQDICFVPNGNYAEVIQKLRPGAADPGEIVD 240 Query: 248 LNGQILGRHNGIINYTIGQ-RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 L+G++LG H G+I+YTIGQ R +G+PL+VV LD +VIVGP+E+L + +R Sbjct: 241 LSGRVLGEHRGVIHYTIGQRRGLGIGGLGDPLYVVRLDPERRQVIVGPKEALSTRIVPVR 300 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365 EINWLGD ++ K+RS++ P ++ +D V+ E GV+ GQAC Sbjct: 301 EINWLGDAPLTSR--SEWQVMAKVRSTRAPREAVIRPLSDTEAEVELIAPEDGVSPGQAC 358 Query: 366 VFYTSDSNEARVLGGGIISGSKR 388 VFY ++R+LGGG I R Sbjct: 359 VFYA--PGDSRILGGGWIWRGAR 379 >gi|15604175|ref|NP_220690.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia prowazekii str. Madrid E] gi|6226259|sp|Q9ZDM1|MNMA_RICPR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|3860867|emb|CAA14767.1| unknown [Rickettsia prowazekii] gi|292571906|gb|ADE29821.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia prowazekii Rp22] Length = 358 Score = 350 bits (899), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 182/367 (49%), Positives = 237/367 (64%), Gaps = 17/367 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 +VVAMSGGVDSS VAA+L G++VIG+TLQLY+ A +K +CCAGQD+YDA+ V + Sbjct: 4 IVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDYGIAVGKKNACCAGQDIYDAKMVANK 63 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + HYV DYE +F+ +VI F SY GETPLPCV CN++VKF DL++ ++LGAD LA Sbjct: 64 LGIPHYVLDYENKFKESVIDNFVDSYLHGETPLPCVQCNKSVKFRDLINTAKELGADKLA 123 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY+R +G + +D +DQSYFLF T++QL L FPLG K R Sbjct: 124 TGHYVRKI-----NGYNGAELHTGLDTTKDQSYFLFTITREQLEYLSFPLGGFTKYETRK 178 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA + GLDIADK DSQDICFV G Y V+ +I G IVH+NG LG H+GIINY Sbjct: 179 LASKFGLDIADKPDSQDICFVPDGNYKTVINKIRPEANTSGKIVHINGFELGEHSGIINY 238 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL--FEDAV 320 TIGQRRGLG+A EPL+VV +D +++ V VG +L VH ++++NWL D + E Sbjct: 239 TIGQRRGLGIAYNEPLYVVKIDPSNNIVYVGQESALHVHEFIIKDVNWLADEIKDHEKLA 298 Query: 321 VDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 VD VKIRS++ P + + +D + V F E VA GQACV Y + RVLG Sbjct: 299 VD-----VKIRSTRPPCHAEISKLCNDRIKVKFLSKEKAVAPGQACVIYAGE----RVLG 349 Query: 380 GGIISGS 386 GG I+ + Sbjct: 350 GGWITSN 356 >gi|157825546|ref|YP_001493266.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia akari str. Hartford] gi|166235076|sp|A8GMY3|MNMA_RICAH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|157799504|gb|ABV74758.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia akari str. Hartford] Length = 365 Score = 350 bits (898), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 179/367 (48%), Positives = 237/367 (64%), Gaps = 13/367 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +VVAMSGGVDSS VAA+L G++VIG+TLQLY+ A +K +CCAGQD+YDA+ Sbjct: 7 KHSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 66 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + HYV DYE +F+ +VI F SY GETPLPCV CN +VKF DL+ R+LGA Sbjct: 67 VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNNSVKFRDLIKTARELGA 126 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 LATGHY+R GD+G + +D +DQSYFLF TT++QL L FPLG K+ Sbjct: 127 SQLATGHYVRK--VSGDNGVE---LHTGLDPAKDQSYFLFTTTKEQLEYLSFPLGWFTKD 181 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R LA + GL++A K DSQDICFV G Y V+ I + G I+H+NG LG H+G Sbjct: 182 ETRKLASKFGLEVAYKPDSQDICFVPDGNYKSVINTIRPNASESGKIIHINGFALGEHSG 241 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 IINYTIGQRRGLG+A EPL+VV +D + V VGP +L V ++++NWL D + ++ Sbjct: 242 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPEAALHVQEFIIKDVNWLADEIKDN 301 Query: 319 AVVDGFKCFVKIRSSQDP-VPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 ++ VKIRS++ P + + DD + + F +E VA GQACV Y + RV Sbjct: 302 KKLE---VAVKIRSTRPPRLAAISKLGDDKMKIRFLSAEKAVAPGQACVIYAGE----RV 354 Query: 378 LGGGIIS 384 LGGG I+ Sbjct: 355 LGGGWIT 361 >gi|148557644|ref|YP_001265226.1| tRNA-specific 2-thiouridylase MnmA [Sphingomonas wittichii RW1] gi|148502834|gb|ABQ71088.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sphingomonas wittichii RW1] Length = 463 Score = 350 bits (897), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 197/366 (53%), Positives = 246/366 (67%), Gaps = 20/366 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+VVAMSGGVDSSVVAAL G + IGVTLQLY+ A R GSCCAGQD+ DAR V D Sbjct: 108 RIVVAMSGGVDSSVVAALAAASGAETIGVTLQLYDHGAAVGRTGSCCAGQDIRDARAVAD 167 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + ++HYVFDYE RFR++VI FA YAAG TP+PCV CN+ VKF+DL + R LGAD L Sbjct: 168 RLGIAHYVFDYESRFRDSVIADFADEYAAGRTPIPCVRCNQGVKFTDLFGIARDLGADCL 227 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R VG G R + R D RDQSYFLFATT+ QL LRFPLG M K VR Sbjct: 228 ATGHYVRR--VVGAGG--RAELHRAADPARDQSYFLFATTRDQLDYLRFPLGAMPKPRVR 283 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A E+GL +A K DSQDICFV G Y +VKR+ A EG+IV L+G++LGRH G+I+ Sbjct: 284 EIAAELGLGVAAKPDSQDICFVPDGDYASIVKRLRPEAAEEGEIVGLDGRVLGRHRGLIH 343 Query: 262 YTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +T+GQRRG+ + EPL+VV L+ + R++VGPR +L V L ++NW+G+G +E + Sbjct: 344 FTVGQRRGIEIGGSPEPLYVVRLEPETKRLVVGPRRALAVSAAMLDDVNWIGEG-YEGPL 402 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 K+RS PVP R +DG V F++ E GVA GQA V Y D RVLGG Sbjct: 403 T------AKVRSLAKPVPA---RFEDGA-VRFDQPEYGVAPGQAAVLYAGD----RVLGG 448 Query: 381 GIISGS 386 G I + Sbjct: 449 GWIRAT 454 >gi|146277942|ref|YP_001168101.1| tRNA-specific 2-thiouridylase MnmA [Rhodobacter sphaeroides ATCC 17025] gi|205817026|sp|A4WTT2|MNMA_RHOS5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|145556183|gb|ABP70796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacter sphaeroides ATCC 17025] Length = 378 Score = 350 bits (897), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 192/378 (50%), Positives = 243/378 (64%), Gaps = 12/378 (3%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSL K P RVVVAMSGGVDSSVVAA L DGYDV+GVTLQLY+ A +KG+CC Sbjct: 6 LNSLGFAKPPSATRVVVAMSGGVDSSVVAAELAADGYDVVGVTLQLYDHGAALAKKGACC 65 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AG+D++DARRV +T+ HYV DYE FR AVI FA +Y AG TP+PC+ CN VKF D Sbjct: 66 AGRDIHDARRVAETMGFPHYVLDYENTFREAVIDEFADAYLAGATPVPCIRCNERVKFKD 125 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL + L AD +ATGHYI+ ++ G G + C D RDQSYFLF+TT++QL L Sbjct: 126 LLQTAKDLDADCMATGHYIQRKM--GAAGP--ELHCA-ADAARDQSYFLFSTTREQLDYL 180 Query: 189 RFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 RFPLG + K R LA GL +ADK DSQDICFV G Y V++++ G A G+IV Sbjct: 181 RFPLGHLASKAETRALAARHGLPVADKPDSQDICFVPNGNYAAVIEKLRPGAADPGEIVD 240 Query: 248 LNGQILGRHNGIINYTIGQ-RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 L G +LG H G+I+YTIGQ R +G+PLFVV LD +VIVGPRE+L + +R Sbjct: 241 LAGNVLGAHRGVIHYTIGQRRGLGIGGLGDPLFVVRLDPERRQVIVGPREALSTRIVPVR 300 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365 EINWLGD ++ K+RS++ P ++ +D V+ E GV+ GQAC Sbjct: 301 EINWLGDAPLTSQA--EWQVMAKVRSTRAPREAVIRPISDTEAEVELIAPEDGVSPGQAC 358 Query: 366 VFYTSDSNEARVLGGGII 383 VF+ ++R+LGGG I Sbjct: 359 VFHV--PGDSRILGGGWI 374 >gi|205829107|sp|A5VFM2|MNMA_SPHWW RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 378 Score = 349 bits (896), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 197/366 (53%), Positives = 246/366 (67%), Gaps = 20/366 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+VVAMSGGVDSSVVAAL G + IGVTLQLY+ A R GSCCAGQD+ DAR V D Sbjct: 23 RIVVAMSGGVDSSVVAALAAASGAETIGVTLQLYDHGAAVGRTGSCCAGQDIRDARAVAD 82 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + ++HYVFDYE RFR++VI FA YAAG TP+PCV CN+ VKF+DL + R LGAD L Sbjct: 83 RLGIAHYVFDYESRFRDSVIADFADEYAAGRTPIPCVRCNQGVKFTDLFGIARDLGADCL 142 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R VG G R + R D RDQSYFLFATT+ QL LRFPLG M K VR Sbjct: 143 ATGHYVRR--VVGAGG--RAELHRAADPARDQSYFLFATTRDQLDYLRFPLGAMPKPRVR 198 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A E+GL +A K DSQDICFV G Y +VKR+ A EG+IV L+G++LGRH G+I+ Sbjct: 199 EIAAELGLGVAAKPDSQDICFVPDGDYASIVKRLRPEAAEEGEIVGLDGRVLGRHRGLIH 258 Query: 262 YTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +T+GQRRG+ + EPL+VV L+ + R++VGPR +L V L ++NW+G+G +E + Sbjct: 259 FTVGQRRGIEIGGSPEPLYVVRLEPETKRLVVGPRRALAVSAAMLDDVNWIGEG-YEGPL 317 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 K+RS PVP R +DG V F++ E GVA GQA V Y D RVLGG Sbjct: 318 T------AKVRSLAKPVPA---RFEDGA-VRFDQPEYGVAPGQAAVLYAGD----RVLGG 363 Query: 381 GIISGS 386 G I + Sbjct: 364 GWIRAT 369 >gi|221639030|ref|YP_002525292.1| tRNA-specific 2-thiouridylase MnmA [Rhodobacter sphaeroides KD131] gi|254811459|sp|B9KR64|MNMA_RHOSK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|221159811|gb|ACM00791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacter sphaeroides KD131] Length = 379 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 189/383 (49%), Positives = 243/383 (63%), Gaps = 12/383 (3%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSL K P RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A +KG+CC Sbjct: 6 LNSLGFAKPPAATRVVVAMSGGVDSSVVAAELAAEGYDVVGVTLQLYDHGAALAKKGACC 65 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AG+D++DARRV +T+ HYV DYE FR AVI FA +Y AG TP+PC+ CN VKF D Sbjct: 66 AGRDIHDARRVAETMGFPHYVLDYENTFREAVIDEFADAYLAGATPVPCIRCNERVKFKD 125 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL + L AD +ATGHYI+ ++ G G P RDQSYFLF+TT +QL L Sbjct: 126 LLQTAKDLDADCMATGHYIQRKM--GPAGPELHCAADPA---RDQSYFLFSTTPEQLAFL 180 Query: 189 RFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 RFPLG + K R LA GL +ADK DSQDICFV G Y +V++++ G A G+IV Sbjct: 181 RFPLGHLASKAETRALAARHGLPVADKPDSQDICFVPNGNYAEVIQKLRPGAADPGEIVD 240 Query: 248 LNGQILGRHNGIINYTIGQ-RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 L+G++LG H G+I+YTIGQ R +G+PL+VV LD +VIVGP+E+L + +R Sbjct: 241 LSGRVLGEHRGVIHYTIGQRRGLGIGGLGDPLYVVRLDPERRQVIVGPKEALSTRIVPVR 300 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365 EINWLGD ++ K+RS++ ++ +D V+ E GV+ GQAC Sbjct: 301 EINWLGDAPLTSR--SEWQVMAKVRSTRASREAVIRPLSDTEAEVELIAPEDGVSPGQAC 358 Query: 366 VFYTSDSNEARVLGGGIISGSKR 388 VFY ++R+LGGG I R Sbjct: 359 VFYA--PGDSRILGGGWIWRGAR 379 >gi|225631290|ref|ZP_03787968.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591011|gb|EEH12215.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 370 Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 181/372 (48%), Positives = 242/372 (65%), Gaps = 19/372 (5%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAGQDV 73 DK P + VVAMSGGVDSSV AALL GY VIGVTLQLY + A+ RKG+CCAGQD+ Sbjct: 13 DKTPHQTKAVVAMSGGVDSSVAAALLHNLGYQVIGVTLQLYGTDGNANARKGACCAGQDI 72 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 YDA+RV +++ HY+ +YEE F+ VI FAS+Y GETP+PCV CN+TVKF DLL VT Sbjct: 73 YDAKRVAESVGFPHYILNYEEIFKKEVIEDFASTYMRGETPIPCVRCNQTVKFRDLLQVT 132 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + LGADVL TGHY+R RL + K +CR +D +DQSYFLFATTQ+QL LRFPLG Sbjct: 133 KNLGADVLVTGHYVR-RLEKNGEVK----LCRSIDKSKDQSYFLFATTQEQLKLLRFPLG 187 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 K +R LA+ L I++K DSQDICFV + Y + ++ +G IV +NG++L Sbjct: 188 GFYKSDIRKLAKYFSLQISEKPDSQDICFVSES-YSKTIAKLAPQSVQKGKIVDVNGKVL 246 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G H+GI+N+T+GQR+GLG+A EPL+V+ ++ ++ VIVGP L +I ++E+NWL Sbjct: 247 GEHSGIVNFTVGQRKGLGIAHNEPLYVIKINTENNEVIVGPINVLMQKKILIKELNWL-- 304 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVFYTSD 371 + +G + VK+RSS + D+ V G++ GQACV Y + Sbjct: 305 ----EQPKEGMEVTVKLRSSHAGSLATIHSTDEKNKACVILNDDYFGISPGQACVAYKDE 360 Query: 372 SNEARVLGGGII 383 +V+GGG I Sbjct: 361 ----QVIGGGWI 368 >gi|58698498|ref|ZP_00373403.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Wolbachia endosymbiont of Drosophila ananassae] gi|225630917|ref|YP_002727708.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Wolbachia sp. wRi] gi|254811470|sp|C0R4S5|MNMA_WOLWR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|58534992|gb|EAL59086.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Wolbachia endosymbiont of Drosophila ananassae] gi|225592898|gb|ACN95917.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Wolbachia sp. wRi] Length = 370 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 180/372 (48%), Positives = 243/372 (65%), Gaps = 19/372 (5%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAGQDV 73 DK P ++ +VAMSGGVDSSV AALL GY VIGVTLQLY + A+ RKG+CCAGQD+ Sbjct: 13 DKAPHQIKAIVAMSGGVDSSVAAALLHNLGYQVIGVTLQLYGTDGNANARKGACCAGQDI 72 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 YDA+RV +++ HY+ +YEE F+ VI FAS+Y GETP+PCV CN+TVKF DLL VT Sbjct: 73 YDAKRVAESVGFPHYILNYEEIFKKEVIEDFASTYMRGETPIPCVRCNQTVKFRDLLQVT 132 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + LGADVL TGHY+R RL + K +CR +D +DQSYFLFATTQ+QL LRFPLG Sbjct: 133 KNLGADVLVTGHYVR-RLEKNGEVK----LCRSIDKSKDQSYFLFATTQEQLKLLRFPLG 187 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 K +R LA+ L I++K DSQDICFV + Y + ++ +G IV +NG++L Sbjct: 188 GFYKSDIRKLAKYFSLQISEKPDSQDICFVSES-YSKTIAKLAPQSVQKGKIVDVNGKVL 246 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G H+GI+N+T+GQR+GLG+A EPL+V+ ++ ++ VIVGP L +I ++E+NWL Sbjct: 247 GEHSGIVNFTVGQRKGLGIAHNEPLYVIKINTENNEVIVGPINVLMQKKILIKELNWL-- 304 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVFYTSD 371 + +G + VK+RSS + D+ V G++ GQACV Y + Sbjct: 305 ----EQPKEGMEVTVKLRSSHAGSLATIHSTDEKNKACVILNDDYFGISPGQACVAYKGE 360 Query: 372 SNEARVLGGGII 383 +V+GGG I Sbjct: 361 ----QVIGGGWI 368 >gi|51473501|ref|YP_067258.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia typhi str. Wilmington] gi|73920129|sp|Q68X66|MNMA_RICTY RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|51459813|gb|AAU03776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia typhi str. Wilmington] Length = 358 Score = 347 bits (890), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 181/369 (49%), Positives = 239/369 (64%), Gaps = 17/369 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 +VVAMSGGVDSS VAA+L G+ VIG+TLQLY+ A +K +CCAG+D+YDA+ V + Sbjct: 4 IVVAMSGGVDSSAVAAMLHEQGHHVIGITLQLYDYGIAVGKKNACCAGKDIYDAKMVANK 63 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + HYV DYE +F+ +VI F +SY GETPLPCV CN+ VKF DL++ ++LGAD LA Sbjct: 64 LGIPHYVLDYENKFKESVIDNFVNSYLHGETPLPCVQCNKLVKFRDLINTAKELGADKLA 123 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY+R +G + +D +DQSYFLF T++QL L FPLG K R Sbjct: 124 TGHYVRKI-----NGYNGAELHTGLDAAKDQSYFLFTITREQLEYLIFPLGGFTKYETRK 178 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA + GLD+ADK DSQDICFV G Y V+ +I + G IVH+NG LG H+GIINY Sbjct: 179 LASKFGLDVADKPDSQDICFVPDGNYKTVINKIRPEASTSGKIVHINGFELGEHSGIINY 238 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL--FEDAV 320 TIGQRRGLG+A EPL+VV +D +++ V VG +L VH ++++NWL D + E Sbjct: 239 TIGQRRGLGIAYNEPLYVVKIDPSNNIVYVGQESALHVHEFIIKDVNWLADEIKDNEKLA 298 Query: 321 VDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 VD VKIRS++ P + + +D + V F +E VA GQACV Y + RVLG Sbjct: 299 VD-----VKIRSTRPPCHAEISKLCNDKIKVQFLSAEKAVAPGQACVIYAGE----RVLG 349 Query: 380 GGIISGSKR 388 GG I+ + R Sbjct: 350 GGWITRNIR 358 >gi|144899505|emb|CAM76369.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Magnetospirillum gryphiswaldense MSR-1] Length = 360 Score = 345 bits (886), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 191/368 (51%), Positives = 245/368 (66%), Gaps = 17/368 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+VVAMSGGVDSS AALLK G+DV+GVTLQLY+ +A R +CCAG+D++DAR V D Sbjct: 6 RIVVAMSGGVDSSATAALLKEQGWDVVGVTLQLYDHGQAVCRPNTCCAGKDIHDARTVAD 65 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + HYV D E F V+ FA SY GETP+PCV CN+TVKF DL S+ R LGAD L Sbjct: 66 VLGIPHYVMDMESTFHADVVDKFAESYIRGETPIPCVLCNQTVKFRDLFSIARDLGADAL 125 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-MKKESV 200 ATGHY++ + D IM + D RDQSYFLF+TT++QL LRFPLG + K+ Sbjct: 126 ATGHYVQRQ-----DSANGAIMLKGADPGRDQSYFLFSTTREQLEFLRFPLGGFLSKDET 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259 R +A L +A K DSQDICFV G Y +V+R+ G G IVH+ +G+ LGRH GI Sbjct: 181 RAIAARYNLPVAAKRDSQDICFVPDGDYAGLVQRLKPGAIRPGAIVHVEDGRELGRHQGI 240 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 I+YTIGQR+GLG+ G+PL+V+ L+ ++V+VGPRE+L RI +R +NWLGDG D Sbjct: 241 IHYTIGQRKGLGLGGGDPLYVIRLEAEKAQVVVGPREALGRSRITVRGVNWLGDGDGAD- 299 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 F C V++RS++ P+P V+ + G V + E GVA GQACVFY D RVL Sbjct: 300 ----FVCQVRVRSTRPPMPARVRLDGQGGGLVMLDMPEQGVAPGQACVFYDGD----RVL 351 Query: 379 GGGIISGS 386 GGG I G+ Sbjct: 352 GGGWIVGA 359 >gi|296535629|ref|ZP_06897808.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseomonas cervicalis ATCC 49957] gi|296264053|gb|EFH10499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseomonas cervicalis ATCC 49957] Length = 368 Score = 345 bits (885), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 188/369 (50%), Positives = 234/369 (63%), Gaps = 21/369 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR+VVAMSGGVDSSVVA LLK G++VIG TLQLY+ A ++KG+CCAGQD++DAR V Sbjct: 1 MRIVVAMSGGVDSSVVAGLLKEQGHEVIGATLQLYDHGAAIEKKGACCAGQDIHDARDVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + HYV D E RFR+AVI FA +YA GETP+PCV CN+TVKF DL+ + R LGAD Sbjct: 61 DRLGIPHYVLDRERRFRDAVIEDFAEAYARGETPIPCVRCNQTVKFQDLVELARDLGADA 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-MKKES 199 LATGHY+R G+ G R R D RDQSYFLFATT+ QL RFPLGD K Sbjct: 121 LATGHYVRR--TEGEAGAELR---RAADPARDQSYFLFATTRAQLEFCRFPLGDYTSKAE 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A +GL +A+K DSQDICFV QGKY D+V ++ EG I H++G++LG H G+ Sbjct: 176 VRAEALRLGLAVAEKPDSQDICFVPQGKYADLVAKLRPEAVAEGSIEHVDGRVLGTHKGV 235 Query: 260 INYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 YT+GQ RGLG+A EPL+V LD RV+V PR +L + + E+NWL Sbjct: 236 ARYTVGQGRGLGMASRDGEEPLYVTALDPARKRVVVAPRGALASPEVLVGEVNWL----- 290 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDSNE 374 DA C VK+R+ + P P + + V E+ + A GQ CV Y D Sbjct: 291 IDAPAVPLPCQVKLRAREMPQPAIAHWQPESGLLRVVLEQPAI-AAPGQGCVLYDGD--- 346 Query: 375 ARVLGGGII 383 RVLGGG I Sbjct: 347 -RVLGGGFI 354 >gi|42521055|ref|NP_966970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Wolbachia endosymbiont of Drosophila melanogaster] gi|81652123|sp|Q73FR5|MNMA_WOLPM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|42410796|gb|AAS14904.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 370 Score = 345 bits (884), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 180/372 (48%), Positives = 242/372 (65%), Gaps = 19/372 (5%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAGQDV 73 DK P + VVAMSGGVDSSV AALL GY V+GVTLQLY + A+ RKG+CCAGQD+ Sbjct: 13 DKAPHQTKAVVAMSGGVDSSVAAALLHNLGYKVVGVTLQLYGTDGNANARKGACCAGQDI 72 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 YDA+RV +++ HY+ +YEE F+ VI FAS+Y GETP+PCV CN+TVKF DLL VT Sbjct: 73 YDAKRVAESVGFPHYLLNYEEIFKKEVIEDFASTYMRGETPIPCVRCNQTVKFRDLLQVT 132 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + LGADVL TGHY+R RL + K +CR +D +DQSYFLFATTQ+QL LRFPLG Sbjct: 133 KNLGADVLVTGHYVR-RLEKNGEVK----LCRSIDKSKDQSYFLFATTQEQLKLLRFPLG 187 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 K +R LA+ L I++K DSQDICFV + Y + ++ +G IV +NG++L Sbjct: 188 GFYKSDIRKLAKYFSLQISEKQDSQDICFVSES-YSKTIAKLAPQSVQKGKIVDVNGKVL 246 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G H+GI+N+T+GQR+GLG+A EPL+V+ ++ ++ VIVGP L +I ++E+NWL Sbjct: 247 GEHSGIVNFTVGQRKGLGIAHNEPLYVIKINTENNEVIVGPINVLMQKKILIKELNWL-- 304 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVFYTSD 371 + +G + VK+RSS + D+ V G++ GQACV Y + Sbjct: 305 ----EQPKEGMEVTVKLRSSHVGSLATIHSTDEKNKACVILNDDYFGISPGQACVAYKDE 360 Query: 372 SNEARVLGGGII 383 +V+GGG I Sbjct: 361 ----QVIGGGWI 368 >gi|99035878|ref|ZP_01314930.1| hypothetical protein Wendoof_01000225 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 370 Score = 344 bits (883), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 179/372 (48%), Positives = 242/372 (65%), Gaps = 19/372 (5%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAGQDV 73 DK P + VVAMSGGVDSSV AALL GY V+G+TLQLY + A+ RKG+CCAGQD+ Sbjct: 13 DKAPHQTKAVVAMSGGVDSSVAAALLHNLGYKVVGMTLQLYGTDGNANARKGACCAGQDI 72 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 YDA+RV +++ HY+ +YEE F+ VI FAS+Y GETP+PCV CN+TVKF DLL VT Sbjct: 73 YDAKRVAESVGFPHYILNYEEIFKKEVIEDFASTYMRGETPIPCVRCNQTVKFRDLLQVT 132 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + LGADVL TGHY+R RL + K +CR +D +DQSYFLFATTQ+QL LRFPLG Sbjct: 133 KNLGADVLVTGHYVR-RLEKNGEVK----LCRSIDKSKDQSYFLFATTQEQLKLLRFPLG 187 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 K +R LA+ L I++K DSQDICFV + Y + ++ +G IV +NG++L Sbjct: 188 GFYKSDIRKLAKYFSLQISEKQDSQDICFVSES-YSKTIAKLAPQSVQKGKIVDVNGKVL 246 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G H+GI+N+T+GQR+GLG+A EPL+V+ ++ ++ VIVGP L +I ++E+NWL Sbjct: 247 GEHSGIVNFTVGQRKGLGIAHNEPLYVIKINTENNEVIVGPINVLMQKKILIKELNWL-- 304 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVFYTSD 371 + +G + VK+RSS + D+ V G++ GQACV Y + Sbjct: 305 ----EQPKEGMEVTVKLRSSHVGSLATIHSTDEKNKACVILNDDYFGISPGQACVAYKDE 360 Query: 372 SNEARVLGGGII 383 +V+GGG I Sbjct: 361 ----QVIGGGWI 368 >gi|83312118|ref|YP_422382.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Magnetospirillum magneticum AMB-1] gi|123541366|sp|Q2W2V2|MNMA_MAGMM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|82946959|dbj|BAE51823.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Magnetospirillum magneticum AMB-1] Length = 373 Score = 344 bits (882), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 196/388 (50%), Positives = 246/388 (63%), Gaps = 22/388 (5%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS-----RKASKR 63 +N+LD+DK P RVVVAMSGGVDSS VAALLK GYDV+GVTLQLY+ + R Sbjct: 1 MNTLDIDKPPSSTRVVVAMSGGVDSSAVAALLKEQGYDVVGVTLQLYDLATSGIEPGACR 60 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 +CCAG+D++DAR V D + + HYV D+EE FR V+ FA +Y TP+PC++CNRT Sbjct: 61 PNTCCAGKDIHDARAVADALGIPHYVLDFEETFRRDVVERFAQTYLEARTPVPCIECNRT 120 Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183 VKF DLL V + LG D LATGHY+R R G DG + D RDQSYFLFATT+ Sbjct: 121 VKFRDLLGVAKDLGGDALATGHYVRRR--PGVDGPE---LWTGRDPGRDQSYFLFATTRD 175 Query: 184 QLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 QL LRFPLGDM KE R +A L +A K DSQDICFV G Y +V R++ A Sbjct: 176 QLDFLRFPLGDMAGKEETRAIAARHHLPVAAKRDSQDICFVPDGDYAALVTRLHPDAARP 235 Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302 G+IV G++LGRH G+I+YTIGQRRGLG+ G PL+VV L+ + RV+VG RE L Sbjct: 236 GEIVDTAGKVLGRHGGLIHYTIGQRRGLGLGGGPPLYVVALEPETGRVVVGSREDLNCLT 295 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361 I + +NWLG E + VK+RS++ P ++R + D V + E GVA Sbjct: 296 IQVEAVNWLGGDETE------LRVAVKVRSTRPAAPALLRRLSGDRAQVILDHPEQGVAP 349 Query: 362 GQACVFYTSDSNEARVLGGGIISGSKRS 389 GQACVFY + RVLGGG I S+ + Sbjct: 350 GQACVFYQGE----RVLGGGWICPSREA 373 >gi|162148152|ref|YP_001602613.1| tRNA-specific 2-thiouridylase MnmA [Gluconacetobacter diazotrophicus PAl 5] gi|205816818|sp|A9HMI3|MNMA_GLUDA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|161786729|emb|CAP56312.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Gluconacetobacter diazotrophicus PAl 5] Length = 361 Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 186/367 (50%), Positives = 245/367 (66%), Gaps = 20/367 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR++VAMSGGVDSSVVAA L +G++V+G TLQLY+SR+ S RKG+CCAG+D++DARRV Sbjct: 1 MRIMVAMSGGVDSSVVAARLVAEGHEVVGATLQLYDSRE-SARKGACCAGRDIHDARRVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + HYV D E RFR +VI FA +YA GETP+PCV CN+ VKF+DLL + R LGA+ Sbjct: 60 DRLGIPHYVIDAETRFRQSVIETFADAYAGGETPVPCVACNQGVKFTDLLGIARDLGAEA 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199 +ATGHY+R G DG + RP+D RDQS+FLFATT+QQL LRFPLGDM K + Sbjct: 120 MATGHYVRR--IEGPDGAE---LHRPVDEGRDQSWFLFATTRQQLEFLRFPLGDMPDKAA 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A GL +A K DSQD+CFV G Y VV+ + +A EG+IV +G+++GRH+G+ Sbjct: 175 VRAEAERFGLSVAAKPDSQDLCFVPDGSYARVVEALRPEMAGEGEIVDGSGRVVGRHDGV 234 Query: 260 INYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 +T+GQ R LG A G VV +D S RV++GPR V + LR++NWL D Sbjct: 235 TRFTVGQSRRLGDAAMRDGARQMVVGIDPASRRVVIGPRTGSAVRDLSLRDMNWLIDPPE 294 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 D +C V+IR+ + P V+R DG V +++ + A GQACV Y + +R Sbjct: 295 GD-----LRCLVQIRAREAARPATVRRTADGASVTLDEAAM-PAPGQACVLY----DGSR 344 Query: 377 VLGGGII 383 VLGGG I Sbjct: 345 VLGGGFI 351 >gi|189183712|ref|YP_001937497.1| tRNA-specific 2-thiouridylase MnmA [Orientia tsutsugamushi str. Ikeda] gi|189180483|dbj|BAG40263.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Orientia tsutsugamushi str. Ikeda] Length = 369 Score = 343 bits (880), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 178/374 (47%), Positives = 236/374 (63%), Gaps = 13/374 (3%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L+L + +VVAMSGGVDSS VAA+LK DGY+VIG+T+QLYN A RKG+CCAGQ Sbjct: 2 LNLKVAKEQATIVVAMSGGVDSSTVAAILKEDGYNVIGITMQLYNHDTAINRKGACCAGQ 61 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+YDA+ V + + + HYV +Y+++F+ +VI F SY GETPLPCV CN++VKF DLL+ Sbjct: 62 DIYDAKFVANQLQIPHYVLNYKDKFKKSVIDNFIESYINGETPLPCVQCNQSVKFHDLLN 121 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + L AD L TGHY+R R+ D + + +D ++DQSYFLFATT+ QL L FP Sbjct: 122 FAKDLQADALVTGHYVR-RI----DTANGIELHKAVDSKKDQSYFLFATTKSQLQYLHFP 176 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG+M K+ R A GL IADK DSQDICFV G Y +VV R+ G IVH++G Sbjct: 177 LGNMTKDETRYHANRYGLHIADKPDSQDICFVADGSYHNVVARLKPNAKKPGKIVHIDGY 236 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 ILG H GIIN+TIGQRR +G++ +PL+V+ +D + V VGP L + +NWL Sbjct: 237 ILGEHQGIINFTIGQRRRIGISFSDPLYVINIDAQQNIVYVGPESKLFKTTFMIHSLNWL 296 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 G G + +V+ VK+RS+ V ++ V V + E +A GQACV Y Sbjct: 297 GPG---NMLVEPLDVEVKVRSTHSAVQAKLYPYSNSMVKVILNEPEKAIAPGQACVIYKG 353 Query: 371 DSNEARVLGGGIIS 384 D VLGGG I+ Sbjct: 354 D----LVLGGGWIA 363 >gi|326386236|ref|ZP_08207860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Novosphingobium nitrogenifigens DSM 19370] gi|326209461|gb|EGD60254.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Novosphingobium nitrogenifigens DSM 19370] Length = 401 Score = 342 bits (877), Expect = 7e-92, Method: Compositional matrix adjust. Identities = 187/383 (48%), Positives = 241/383 (62%), Gaps = 19/383 (4%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 DL + +D R+VVAMSGGVDSSVVAAL R G +VIGVTLQLY+ A+ RKG+CCAG+ Sbjct: 30 FDLPRPAQDCRIVVAMSGGVDSSVVAALAARSGAEVIGVTLQLYDHGAATGRKGACCAGE 89 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DAR V D + +HYVFD+E FR AV+ FA Y +G TP+PC+ CN KF+DL++ Sbjct: 90 DIRDARAVADRLGFAHYVFDHESDFREAVVERFADDYLSGRTPIPCIRCNMGPKFTDLMA 149 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + R LGAD LATGHY+R R+ + + R +D RDQSYFL+ TT +QL LRFP Sbjct: 150 MARDLGADCLATGHYVR-RVMTATGPE----LHRAVDPARDQSYFLYGTTDEQLAFLRFP 204 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250 LG + K VR +A E+GL +A K DSQDICFV G Y VV I ++ GDIVH G Sbjct: 205 LGGLAKPDVRRIAGELGLGVAAKPDSQDICFVPDGDYARVVSAIRPEGSVAGDIVHAATG 264 Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 ++LG+H GII+YT+GQRRGL + EPL+VV LD + RV+VGP+ L V R ++ E N Sbjct: 265 EVLGQHKGIIHYTVGQRRGLEIGGQAEPLYVVALDAPARRVLVGPKAMLAVDRAHIVETN 324 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ---RNDDGVYVDFEKSEVGVASGQACV 366 +G D + K+RS PVPV V+ + F E GVA GQA V Sbjct: 325 RIGPMPGPDEALT-----AKVRSLAKPVPVAVEGPFGEGAATTIRFFAPEYGVAPGQAAV 379 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 Y D RV+GGG I ++ + Sbjct: 380 IYAGD----RVVGGGWIESTENA 398 >gi|148285130|ref|YP_001249220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Orientia tsutsugamushi str. Boryong] gi|205816896|sp|A5CFJ6|MNMA_ORITB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|146740569|emb|CAM81183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Orientia tsutsugamushi str. Boryong] Length = 369 Score = 341 bits (875), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 177/374 (47%), Positives = 236/374 (63%), Gaps = 13/374 (3%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L+L + +VVAMSGGVDSS VAA+LK DGY+VIG+T+QLYN A RKG+CCAGQ Sbjct: 2 LNLKVAKEQATIVVAMSGGVDSSTVAAILKEDGYNVIGITMQLYNHDTAINRKGACCAGQ 61 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+YDA+ V + + + HYV +Y+++F+ +VI F SY GETPLPCV CN++VKF DLL+ Sbjct: 62 DIYDAKFVANQLQIPHYVLNYKDKFKESVIDNFIESYINGETPLPCVQCNQSVKFHDLLN 121 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + L AD L TGHY+R R+ D + + +D ++DQSYFLFATT+ QL L FP Sbjct: 122 FAKDLQADALVTGHYVR-RI----DTANGIELHKAVDSKKDQSYFLFATTKSQLQYLHFP 176 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG+M K+ R A GL IADK DSQDICFV G Y +VV ++ G IVH++G Sbjct: 177 LGNMTKDETRYHANRYGLHIADKPDSQDICFVADGAYHNVVAKLKPNAKKPGKIVHIDGY 236 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 ILG H GIIN+TIGQRR +G++ +PL+V+ +D + V VGP L + +NWL Sbjct: 237 ILGEHQGIINFTIGQRRRIGISFSDPLYVINIDAQQNIVYVGPESKLFKTTFMIHSLNWL 296 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 G G + +V+ VK+RS+ V ++ V V + E +A GQACV Y Sbjct: 297 GPG---NMLVEPLDVEVKVRSTHSAVRAKLYPYSNSMVKVILNEPEKAIAPGQACVIYKG 353 Query: 371 DSNEARVLGGGIIS 384 D VLGGG I+ Sbjct: 354 D----LVLGGGWIA 363 >gi|46202527|ref|ZP_00053063.2| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Magnetospirillum magnetotacticum MS-1] Length = 373 Score = 341 bits (875), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 193/383 (50%), Positives = 246/383 (64%), Gaps = 22/383 (5%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS-----RKASKR 63 +NSLD+DK RVVVAMSGGVDSS VAALLK GYDV+GVTLQLY+ + R Sbjct: 1 MNSLDIDKPASATRVVVAMSGGVDSSAVAALLKEQGYDVVGVTLQLYDLATSGIEPGACR 60 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 +CCAG+D++DAR V D + + HYV D+EE FR V+ FA +Y +TP+PC++CNRT Sbjct: 61 PNTCCAGKDIHDARAVADALGIPHYVLDFEETFRRDVVERFAQTYLEAKTPVPCIECNRT 120 Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183 VKF DLL V + LGAD LATGHY+R R G + M D RDQSYFL+ATT+ Sbjct: 121 VKFRDLLGVAKDLGADALATGHYVRRR-----SGPQGPEMWAGRDPGRDQSYFLYATTRA 175 Query: 184 QLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 QL LRFPLGDM KE R +A L +A K DSQDICFV G Y +V R++ A Sbjct: 176 QLDFLRFPLGDMSGKEETRAIAARHHLPVAAKRDSQDICFVPDGDYAALVTRLHPEAARP 235 Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302 G+IV +G++LGRH G+I+YTIGQRRGLG+ G PL+VV L+ + RV+VG R+ L+ Sbjct: 236 GEIVDSSGKVLGRHEGLIHYTIGQRRGLGLGGGPPLYVVALEPETDRVVVGGRQDLDCPV 295 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVAS 361 + + +NWLG E + VK+RS++ P ++R +G V + E GVA Sbjct: 296 VPVEAVNWLGGDETE------LRVAVKVRSTRPAAPALLRRLPNGRAEVILDHPEQGVAP 349 Query: 362 GQACVFYTSDSNEARVLGGGIIS 384 GQACVFY + RVLGGG IS Sbjct: 350 GQACVFYQGE----RVLGGGWIS 368 >gi|209542792|ref|YP_002275021.1| tRNA-specific 2-thiouridylase MnmA [Gluconacetobacter diazotrophicus PAl 5] gi|209530469|gb|ACI50406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Gluconacetobacter diazotrophicus PAl 5] Length = 361 Score = 341 bits (874), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 185/367 (50%), Positives = 245/367 (66%), Gaps = 20/367 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR++VAMSGGVDSSVVAA L +G++V+G TLQLY+SR+ S RKG+CCAG+D++DARRV Sbjct: 1 MRIMVAMSGGVDSSVVAARLVAEGHEVVGATLQLYDSRE-SARKGACCAGRDIHDARRVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + HYV D E RFR +VI FA +YA GETP+PCV CN+ VKF+DLL + R LGA+ Sbjct: 60 DRLGIPHYVIDAETRFRQSVIETFADAYAGGETPVPCVACNQGVKFTDLLGMARDLGAEA 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199 +ATGHY+R G DG + RP+D RDQS+FLFATT++QL LRFPLGDM K + Sbjct: 120 MATGHYVRR--IEGPDGAE---LHRPVDEGRDQSWFLFATTRRQLEFLRFPLGDMPDKAA 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A GL +A K DSQD+CFV G Y VV+ + +A EG+IV +G+++GRH+G+ Sbjct: 175 VRAEAERFGLSVAAKPDSQDLCFVPDGSYARVVEALRPEMAGEGEIVDGSGRVVGRHDGV 234 Query: 260 INYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 +T+GQ R LG A G VV +D S RV++GPR V + LR++NWL D Sbjct: 235 TRFTVGQSRRLGDAAMRDGARQMVVGIDPASRRVVIGPRTGSAVRDLSLRDMNWLIDPPE 294 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 D +C V+IR+ + P V+R DG V +++ + A GQACV Y + +R Sbjct: 295 GD-----LRCLVQIRAREAARPATVRRTADGASVTLDEAAM-PAPGQACVLY----DGSR 344 Query: 377 VLGGGII 383 VLGGG I Sbjct: 345 VLGGGFI 351 >gi|58584415|ref|YP_197988.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418731|gb|AAW70746.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contain the PP-loop ATPase domain [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 385 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 177/373 (47%), Positives = 240/373 (64%), Gaps = 20/373 (5%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQD 72 DK P + VVAMSGGVDSSV A LL R GY VIGVTLQLY + +++KG CCAGQD Sbjct: 27 DKVPHQTKAVVAMSGGVDSSVAAVLLHRLGYQVIGVTLQLYGADGNSNTRKKGVCCAGQD 86 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 +YDA+RV + HY+ +YEE F+ VI FA +Y G+TP+PC+ CN+TVKF DLL V Sbjct: 87 IYDAKRVAEGTGFPHYILNYEEIFKKEVIESFAQTYIQGKTPIPCIKCNQTVKFRDLLQV 146 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 TR LGADVL TGHY+R RL + K +CR +D +DQSYFLFATT++QL LRFPL Sbjct: 147 TRNLGADVLITGHYVR-RLEKNGEVK----LCRGIDKSKDQSYFLFATTKEQLKLLRFPL 201 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G K +VR LAR L I++K DSQDICFV + Y + ++ +G IV +NG++ Sbjct: 202 GGFYKCNVRKLARYFSLPISEKPDSQDICFVSEN-YSKTIAKLAPQSIQKGKIVDVNGKV 260 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 LG HNGI+N+T+GQR+GLG+A EPL+VV ++ ++ ++VGP +L +I ++E+NWL Sbjct: 261 LGEHNGIVNFTVGQRKGLGIAYSEPLYVVRINTKNNEIVVGPVNALMQRKILVKELNWL- 319 Query: 313 DGLFEDAVVDGFKCFVKIRS--SQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 + G + VK+RS S ++ + + YV ++ GQACV Y Sbjct: 320 -----EQPKKGMEVTVKLRSLHSGSLAKIYPAKEQNKAYVILNDDYFSISPGQACVAYKD 374 Query: 371 DSNEARVLGGGII 383 + +V+GGG I Sbjct: 375 E----QVIGGGWI 383 >gi|254456653|ref|ZP_05070082.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Pelagibacter sp. HTCC7211] gi|207083655|gb|EDZ61081.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Pelagibacter sp. HTCC7211] Length = 372 Score = 340 bits (871), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 169/378 (44%), Positives = 242/378 (64%), Gaps = 11/378 (2%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 LNS+ ++K P+D VVVAMSGGVDSS VA ++K +GY VIG+TL+LY+ K + Sbjct: 3 NELNSIGINKKPEDTTVVVAMSGGVDSSTVAGMMKNEGYKVIGITLKLYDDGKEVAKSKQ 62 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 CC+GQD+ DA+RV +N+ H + Y+++F+ VI F SY GETP+PCV CN+TVKF Sbjct: 63 CCSGQDIMDAKRVAHKLNIEHKILYYQDKFKQGVIDNFVDSYLNGETPIPCVQCNQTVKF 122 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 DL V+++L AD L TGHY++S M R +D RDQSYFLF TT++QL Sbjct: 123 KDLFEVSKELNADALVTGHYVKSIT-----SNNTTNMYRAIDENRDQSYFLFNTTREQLD 177 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 LRFPLG M K+ R++A+++ L++ADK DSQDICFV G Y V+++ +G+I Sbjct: 178 YLRFPLGGMLKDETREIAKDLDLNVADKPDSQDICFVPNGDYASVIRKFRPDSFQKGNIK 237 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 +L+G ++G H+GIIN+TIGQR+G+ V+ EPL+V+ ++ ++ ++VGP+E L I L+ Sbjct: 238 NLDGDVIGVHDGIINFTIGQRKGIKVSDKEPLYVLKINSENNEIVVGPKEKLGKKSITLK 297 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQAC 365 ++N L D + FVK+RS+ + + DD V E G++ GQAC Sbjct: 298 DLNLLTDKKELKKNI-----FVKVRSTGSLLEAKIDLKDDNTANVSLISPEDGISPGQAC 352 Query: 366 VFYTSDSNEARVLGGGII 383 VFY D +VLGGG I Sbjct: 353 VFYNKDQYGHKVLGGGWI 370 >gi|190571202|ref|YP_001975560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018602|ref|ZP_03334410.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|229487430|sp|B3CLZ0|MNMA_WOLPP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|190357474|emb|CAQ54908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995553|gb|EEB56193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 368 Score = 340 bits (871), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 173/371 (46%), Positives = 244/371 (65%), Gaps = 19/371 (5%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 DK P + +VAMSGGVDSSV AALL GY+VIGVTLQLY S + RKG+CCAGQD+Y Sbjct: 13 DKAPHQTKAIVAMSGGVDSSVAAALLYNLGYEVIGVTLQLYGS-DGNARKGACCAGQDIY 71 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ V +++ HY+ +YEE F+ VI FA++Y GETP+PCV CN+TVKF DLL VT+ Sbjct: 72 DAKYVAESVGFPHYILNYEEIFKKEVIEDFANTYMRGETPIPCVRCNQTVKFRDLLQVTK 131 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGADVL TGHY+R + ++G+ + +CR +D +DQSYFLFATT++QL LRFPLG Sbjct: 132 NLGADVLVTGHYVRR---LEENGEVK--LCRSIDKSKDQSYFLFATTEEQLKLLRFPLGG 186 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 K +R LA+ GL I++K DSQDICFV + Y + ++ +G IV ++G++LG Sbjct: 187 FYKSDIRKLAKYFGLQISEKPDSQDICFVSES-YSKTIAKLAPQSVQKGKIVDIHGKVLG 245 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H+GI+N+T+GQRRGL +A EPL+V+ ++ ++ V+VGP +L +I ++E+NWL Sbjct: 246 EHSGIVNFTVGQRRGLCIAHNEPLYVIKINTENNEVVVGPINALMQKKILVKELNWL--- 302 Query: 315 LFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + +G + VK+RSS ++ + V G++ GQACV Y + Sbjct: 303 ---EQPKEGMEVTVKLRSSHAGSSATIYSTDEKNKACVILNDDYFGISPGQACVAYKGE- 358 Query: 373 NEARVLGGGII 383 +V+GGG I Sbjct: 359 ---QVIGGGWI 366 >gi|205829099|sp|Q5GTC8|MNMA_WOLTR RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 371 Score = 339 bits (870), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 177/373 (47%), Positives = 240/373 (64%), Gaps = 20/373 (5%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQD 72 DK P + VVAMSGGVDSSV A LL R GY VIGVTLQLY + +++KG CCAGQD Sbjct: 13 DKVPHQTKAVVAMSGGVDSSVAAVLLHRLGYQVIGVTLQLYGADGNSNTRKKGVCCAGQD 72 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 +YDA+RV + HY+ +YEE F+ VI FA +Y G+TP+PC+ CN+TVKF DLL V Sbjct: 73 IYDAKRVAEGTGFPHYILNYEEIFKKEVIESFAQTYIQGKTPIPCIKCNQTVKFRDLLQV 132 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 TR LGADVL TGHY+R RL + K +CR +D +DQSYFLFATT++QL LRFPL Sbjct: 133 TRNLGADVLITGHYVR-RLEKNGEVK----LCRGIDKSKDQSYFLFATTKEQLKLLRFPL 187 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G K +VR LAR L I++K DSQDICFV + Y + ++ +G IV +NG++ Sbjct: 188 GGFYKCNVRKLARYFSLPISEKPDSQDICFVSEN-YSKTIAKLAPQSIQKGKIVDVNGKV 246 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 LG HNGI+N+T+GQR+GLG+A EPL+VV ++ ++ ++VGP +L +I ++E+NWL Sbjct: 247 LGEHNGIVNFTVGQRKGLGIAYSEPLYVVRINTKNNEIVVGPVNALMQRKILVKELNWL- 305 Query: 313 DGLFEDAVVDGFKCFVKIRS--SQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 + G + VK+RS S ++ + + YV ++ GQACV Y Sbjct: 306 -----EQPKKGMEVTVKLRSLHSGSLAKIYPAKEQNKAYVILNDDYFSISPGQACVAYKD 360 Query: 371 DSNEARVLGGGII 383 + +V+GGG I Sbjct: 361 E----QVIGGGWI 369 >gi|332187411|ref|ZP_08389149.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sphingomonas sp. S17] gi|332012572|gb|EGI54639.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sphingomonas sp. S17] Length = 365 Score = 338 bits (868), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 186/374 (49%), Positives = 236/374 (63%), Gaps = 22/374 (5%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L +P+ R+VVAMSGGVDSSVVAAL G + IGVTLQLY+ +A R G+CCAG+ Sbjct: 4 FQLGGDPRAKRIVVAMSGGVDSSVVAALAHATGAETIGVTLQLYDHGEAVGRAGACCAGR 63 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DAR VCD + ++HYVFD+E+ FR V+ FA Y AG TP+PCV CN KF+DLL Sbjct: 64 DIRDARAVCDRLGIAHYVFDHEDSFRTQVVDRFADEYLAGRTPIPCVQCNMGPKFTDLLK 123 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + R LGAD LATGHY+R +G + R D RDQSYFLFATTQ+QL LRFP Sbjct: 124 LARDLGADCLATGHYVRRV-----EGTHGAELHRGADPARDQSYFLFATTQEQLNFLRFP 178 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG + K VR++A E+ L +A K DSQDICFV G Y +VK++ GDI+ L+G Sbjct: 179 LGALPKSRVREIAAELSLSVAAKPDSQDICFVPDGDYAGLVKKLRPEADTRGDIIDLSGA 238 Query: 252 ILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 LG H G+I+YT+GQRRGL + EPL+VV L+ ++ RV+VGPR +L V L +N Sbjct: 239 KLGEHRGLIHYTVGQRRGLEIGGSPEPLYVVRLEPDTKRVVVGPRTALAVEAARLTGMNI 298 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 LG +DG F K+RS PVP + G + F+ E GV+ GQA V Y Sbjct: 299 LGP-------LDG-PLFAKVRSMAKPVPARMV----GDRLVFDAPEYGVSPGQAAVLYDG 346 Query: 371 DSNEARVLGGGIIS 384 D RVLGGG I+ Sbjct: 347 D----RVLGGGWIA 356 >gi|258543643|ref|YP_003189076.1| tRNA-specific 2-thiouridylase MnmA [Acetobacter pasteurianus IFO 3283-01] gi|256634721|dbj|BAI00697.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Acetobacter pasteurianus IFO 3283-01] gi|256637777|dbj|BAI03746.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Acetobacter pasteurianus IFO 3283-03] gi|256640831|dbj|BAI06793.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Acetobacter pasteurianus IFO 3283-07] gi|256643886|dbj|BAI09841.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Acetobacter pasteurianus IFO 3283-22] gi|256646941|dbj|BAI12889.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Acetobacter pasteurianus IFO 3283-26] gi|256649994|dbj|BAI15935.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Acetobacter pasteurianus IFO 3283-32] gi|256652984|dbj|BAI18918.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656038|dbj|BAI21965.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Acetobacter pasteurianus IFO 3283-12] Length = 360 Score = 337 bits (864), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 183/367 (49%), Positives = 244/367 (66%), Gaps = 20/367 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR++VAMSGGVDSSVVAA L +G++V+G TLQLY+SR A+K KG+CCAGQD+ DAR V Sbjct: 1 MRILVAMSGGVDSSVVAARLLEEGHEVVGATLQLYDSRGAAK-KGACCAGQDIRDARAVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + HYV D E RF+++VI FA +YA+GETP+PCV CN+ VKF+DLL + R++GAD Sbjct: 60 DLLGFPHYVIDAERRFKDSVIERFADAYASGETPVPCVACNQGVKFTDLLGLAREIGADA 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199 +ATGHY+R G DG + RP D +RDQS+FLFATT+ QL LRFPLGDM K + Sbjct: 120 MATGHYVRR--VEGPDGAE---LHRPCDEDRDQSWFLFATTRDQLEFLRFPLGDMPDKAA 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A GL +A K DSQD+CFV G Y D+V++++ +A G+IV GQI+G+H G+ Sbjct: 175 VRKEAERFGLVVAGKPDSQDLCFVSDGSYVDLVEKMHPEMAGPGEIVDQQGQIVGQHEGV 234 Query: 260 INYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 + +T+GQ + LG A GE VV ++ RVI+GPRE V + +R++NWL Sbjct: 235 MRFTVGQSKRLGNAARLNGERQMVVGVEPGRRRVIIGPREKSFVTALSVRDVNWL----- 289 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 DA +G C V++R+ ++P V DG V E+ + A GQACVFY R Sbjct: 290 VDAPPEGLVCRVQMRAREEPRAARVVPTPDGAMVYLEEPAM-PAPGQACVFYQG----TR 344 Query: 377 VLGGGII 383 +LGGG I Sbjct: 345 ILGGGFI 351 >gi|330993151|ref|ZP_08317089.1| tRNA-specific 2-thiouridylase mnmA [Gluconacetobacter sp. SXCC-1] gi|329759921|gb|EGG76427.1| tRNA-specific 2-thiouridylase mnmA [Gluconacetobacter sp. SXCC-1] Length = 376 Score = 337 bits (863), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 186/388 (47%), Positives = 251/388 (64%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K + MR++VAMSGGVDSSVVAA L +G++VIG TLQLY+SR+++K KG+CCAG+D+ Sbjct: 4 IGKWNQAMRILVAMSGGVDSSVVAARLVDEGHEVIGATLQLYDSRESTK-KGACCAGRDI 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DARRV D + + HYV D E RF ++VI FA +YAAGETP+PCV CN+ VKF+DLL + Sbjct: 63 HDARRVADRLGIPHYVIDAERRFHDSVIGTFADAYAAGETPVPCVACNQGVKFTDLLGMA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 R+LG D +ATGHY+R G DG M RP+D RDQS+FLFATT+ QL LRFPLG Sbjct: 123 RELGVDAMATGHYVRR--VEGPDGPE---MHRPVDAGRDQSWFLFATTRDQLDFLRFPLG 177 Query: 194 DMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 DM K +VR A GL +A K DSQD+CFV G Y +V+++ + G+IV +GQ+ Sbjct: 178 DMPDKAAVRAEAERFGLAVAAKPDSQDLCFVTDGSYAGLVEKLRPDVTGAGEIVDQSGQV 237 Query: 253 LGRHNGIINYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 +GRH G+ YT+GQ R LG A G VV + S RV++GPR + LR++N Sbjct: 238 VGRHEGVTRYTVGQSRRLGNAAMRDGARQMVVGIQPASRRVVIGPRAQAVTRTLMLRDMN 297 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFY 368 W L DG +C V+IR+ + P + Q + G V+ ++ V A GQACV Y Sbjct: 298 W----LVSPPGPDGLRCAVQIRAREAARPATIWQAGNGGARVELDEGAV-PAPGQACVLY 352 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + +RVLGGG I +R D+ E+ + Sbjct: 353 ----DGSRVLGGGFI---RRPDSEEKGV 373 >gi|296282975|ref|ZP_06860973.1| tRNA-specific 2-thiouridylase MnmA [Citromicrobium bathyomarinum JL354] Length = 384 Score = 336 bits (862), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 184/385 (47%), Positives = 234/385 (60%), Gaps = 21/385 (5%) Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69 N DL + + R+VVAMSGGVDSSVVAAL + G DV+G+TLQLY+ A+ RKG+CCA Sbjct: 15 NLFDLPRPASECRIVVAMSGGVDSSVVAALAAKTGADVVGITLQLYDYGAATGRKGACCA 74 Query: 70 GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 G D+ DAR V D + ++HYVFD+E FR +V+ FA Y AG TP+PC+ CN KF+DL Sbjct: 75 GDDIADARAVADRLGIAHYVFDHESAFRESVVEQFADDYLAGRTPVPCIRCNMGPKFTDL 134 Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 L++ R+L AD LATGHY+R + G + R D RDQSYFLFATTQ QL LR Sbjct: 135 LTMARELDADCLATGHYVRRVMGAGGS-----ELHRAEDAGRDQSYFLFATTQPQLDFLR 189 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL- 248 FPLG M K VR LA E GL A K DSQDICFV G Y +VK++ A G IVH Sbjct: 190 FPLGGMPKSQVRALAEEAGLRNAAKPDSQDICFVPDGNYAGIVKKLRPEGATPGAIVHAR 249 Query: 249 NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 G+ LG H G++++T+GQRRGL + EPL+VV LD NS+ V VGP+ L L + Sbjct: 250 TGETLGEHAGVVHFTVGQRRGLEIGGQPEPLYVVELDANSAEVRVGPKAMLATASAQLVD 309 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN---DDGVYVDFEKSEVGVASGQA 364 N +G + K+RS PVPV ++ + V + FE E GVA GQA Sbjct: 310 TNRIGP-------LPDLPLTAKVRSLAKPVPVTLEGSLGEGSPVTITFETPEYGVAPGQA 362 Query: 365 CVFYTSDSNEARVLGGGIISGSKRS 389 V Y D R +GGG I ++ + Sbjct: 363 AVIYAGD----RAVGGGWIDSTRPA 383 >gi|254796826|ref|YP_003081663.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neorickettsia risticii str. Illinois] gi|254590056|gb|ACT69418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neorickettsia risticii str. Illinois] Length = 368 Score = 335 bits (860), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 175/370 (47%), Positives = 240/370 (64%), Gaps = 15/370 (4%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVY 74 K +D++V+VAMSGGVDSS VAA L R GY VIGVTLQL+ NS + +CCAG D++ Sbjct: 11 KASRDIKVMVAMSGGVDSSTVAAYLHRAGYKVIGVTLQLHSNSTSTQTNRKTCCAGSDIF 70 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+RV HYV + EE FR VI FA SY GETP+PCV CN+TVKF DL+ + + Sbjct: 71 DAKRVAAQFGFLHYVVNMEETFRKEVIEDFAKSYLRGETPIPCVKCNQTVKFRDLMKIAK 130 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 L D L TGHY+R RL + + + + +D +DQSYFLF TT++QL LRFPLG+ Sbjct: 131 NLSVDALVTGHYVR-RLTTTNGVE----LHKGIDPSKDQSYFLFNTTREQLEFLRFPLGN 185 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 +KK RDLAR++ +DI++K +SQDICFV Y DV+K+ G I+ NG++LG Sbjct: 186 LKKSETRDLARKLSVDISEKPESQDICFVNGKSYADVIKKFRPDAQKPGKILSTNGEVLG 245 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 HNG I+YTIGQR GL ++ PL+VV +D ++ +IVG R+ L+ +Y++E+NWL DG Sbjct: 246 THNGTIHYTIGQRHGLQLSSPTPLYVVKIDAQNNIIIVGTRDKLQQRSLYVKEVNWL-DG 304 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYTSDSN 373 + G +C VK+RS D V ++ + D + V E+ + +A GQACV Y + Sbjct: 305 ---KELTAGLECEVKLRSGADTVKGYLYPSSDLLKVSLAEEPKCAIAPGQACVMY----H 357 Query: 374 EARVLGGGII 383 ++VLGGG I Sbjct: 358 GSKVLGGGWI 367 >gi|296114840|ref|ZP_06833488.1| tRNA-specific 2-thiouridylase MnmA [Gluconacetobacter hansenii ATCC 23769] gi|295978546|gb|EFG85276.1| tRNA-specific 2-thiouridylase MnmA [Gluconacetobacter hansenii ATCC 23769] Length = 358 Score = 334 bits (857), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 180/367 (49%), Positives = 243/367 (66%), Gaps = 20/367 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR++VAMSGGVDSSVVAA L +G++V+G TLQLY+SR+ S RKG+CCAG+D++DARRV Sbjct: 1 MRILVAMSGGVDSSVVAARLVEEGHEVVGATLQLYDSRE-SARKGACCAGRDIHDARRVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + ++HYV D E RFR++VI FA +YA GETP+PCV CN+ VKF+DLL + R LG D Sbjct: 60 DRLGIAHYVIDAERRFRDSVIETFADAYAEGETPVPCVACNQGVKFTDLLGMARDLGVDA 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199 +ATGHY+R R+ +G + + RP+D RDQS+FLFATT QQL LRFPLGDM K++ Sbjct: 120 MATGHYVR-RI----EGPQGVELHRPVDAGRDQSWFLFATTLQQLGFLRFPLGDMPDKDA 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A GL +A K DSQD+CF+ G Y +V+++ + G+IV L+G ++G H G+ Sbjct: 175 VRAEAERFGLAVAGKPDSQDLCFIPDGSYARLVEKLRPQTSGAGEIVDLSGNVVGTHEGV 234 Query: 260 INYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 YT+GQ R LG A GE VV ++ RV++GPR + LR +NWL Sbjct: 235 ARYTVGQSRRLGDATMQGGERQMVVGIEPGRRRVVIGPRTQGVTRELRLRNMNWL----- 289 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + G +C V+IR+ + P V+R +DG V +++ V A GQACV Y + R Sbjct: 290 VEPPAQGLRCSVQIRAREAVRPATVRRTEDGASVLLDEAAV-PAPGQACVMY----DGTR 344 Query: 377 VLGGGII 383 VLGGG I Sbjct: 345 VLGGGFI 351 >gi|241116858|ref|XP_002401642.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ixodes scapularis] gi|215493186|gb|EEC02827.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ixodes scapularis] Length = 343 Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 170/350 (48%), Positives = 226/350 (64%), Gaps = 13/350 (3%) Query: 36 VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEER 95 VAA+L G++VIG+TLQLY+ A +K +CCAGQD+YDA+ V + + + HYV YE + Sbjct: 2 VAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKMVANKLGIPHYVLGYESK 61 Query: 96 FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGD 155 F+ +VI F SY GETPLPCV CN++VKF DL+ R+LGAD LATGHY+R GD Sbjct: 62 FKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGADKLATGHYVRK--INGD 119 Query: 156 DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKS 215 +G + +D +DQSYFLF TT++QL L FPLG + K+ R LA + GL++ADK Sbjct: 120 NGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLSFPLGGLTKDETRKLASKFGLEVADKP 176 Query: 216 DSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMG 275 DSQDICFV G Y V+ +I G + G IVH+NG LG H+GIINYTIGQRRGLG+A Sbjct: 177 DSQDICFVPDGNYKSVINKIRPGSSESGKIVHVNGFELGEHSGIINYTIGQRRGLGIAYN 236 Query: 276 EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQD 335 +PL+VV +D + V VGP +L V ++++NWL D E + + VKIRS++ Sbjct: 237 KPLYVVKIDPKDNIVYVGPESALHVQEFIIKDVNWLAD---ETKDNEKLEVAVKIRSTRP 293 Query: 336 PVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 P + + DD + + F E VA GQACV Y + RVLGGG I+ Sbjct: 294 PRLAEISKLGDDKMKIKFLSEEKAVAPGQACVIYAGE----RVLGGGWIT 339 >gi|56416599|ref|YP_153673.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaplasma marginale str. St. Maries] gi|222474965|ref|YP_002563380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU) [Anaplasma marginale str. Florida] gi|269958985|ref|YP_003328774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaplasma centrale str. Israel] gi|81359210|sp|Q5PBB1|MNMA_ANAMM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|56387831|gb|AAV86418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaplasma marginale str. St. Maries] gi|222419101|gb|ACM49124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU) [Anaplasma marginale str. Florida] gi|269848816|gb|ACZ49460.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaplasma centrale str. Israel] Length = 387 Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 177/383 (46%), Positives = 245/383 (63%), Gaps = 13/383 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 MV + L+ L K P++ VVVAMSGGVDSSVVAALL GY VIG T+QL++S A Sbjct: 9 MVFDGSLNLDPLVSGKPPEETTVVVAMSGGVDSSVVAALLHERGYKVIGATMQLHSSSPA 68 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 S K SCC D+YDA+RV T+ HYV DYEE FR VI F +SY GETP+PCV C Sbjct: 69 SGAK-SCCGSVDIYDAKRVASTLGFPHYVLDYEEVFRREVIDDFINSYKRGETPIPCVKC 127 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N+TVKF D+L R +G DV+ATGHY+R G+ + + R D ++DQSYFLF+ Sbjct: 128 NQTVKFRDMLKAARAIGGDVVATGHYVRRVEIAGE-----QQILRGKDPQKDQSYFLFSV 182 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 T +QL LRFPLGD+ K +VR LA+++ L++ADK DSQDICFV + Y +V++ ++ Sbjct: 183 TSEQLKFLRFPLGDLAKSNVRLLAQQLNLEVADKPDSQDICFVPENSYREVLRNLDPASV 242 Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300 +G IVH++G++LG H+GI N+T+GQRRGL ++ PL+VV LD + V+VGP+ +L Sbjct: 243 KKGKIVHVDGRLLGEHDGISNFTVGQRRGLNISAPYPLYVVRLDAAQNTVVVGPQSALMK 302 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360 ++++ +NWL D + G ++RSS V + + DG + + V+ Sbjct: 303 RALFVKNLNWLPD---YNIPKRGLAVDARLRSSGATVRATITSDGDGYGTVVLEEDCVVS 359 Query: 361 SGQACVFYTSDSNEARVLGGGII 383 GQACV Y ++ R+LGGG I Sbjct: 360 PGQACVLY----DKERLLGGGWI 378 >gi|294677198|ref|YP_003577813.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacter capsulatus SB 1003] gi|294476018|gb|ADE85406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacter capsulatus SB 1003] Length = 354 Score = 333 bits (855), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 186/361 (51%), Positives = 237/361 (65%), Gaps = 14/361 (3%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSVVAA+LK +GYDVIGVTLQLY+ A +KG+CCAGQD++DARRV + +N Sbjct: 1 MSGGVDSSVVAAMLKEEGYDVIGVTLQLYDHGAALAKKGACCAGQDIHDARRVAEAMNFP 60 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 HYV DYE FR AVI FA +Y AG TP+PC+ CN VKF DLL R L AD +ATGHY Sbjct: 61 HYVLDYENTFREAVIEEFADAYLAGATPVPCIRCNERVKFKDLLETARDLDADCMATGHY 120 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDLAR 205 I+ +L G G PM RDQSYFLF+TT +QL LRFPLG + K R LA Sbjct: 121 IQRKL--GAHGPELHSAADPM---RDQSYFLFSTTPEQLAFLRFPLGHLPSKAETRKLAA 175 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 GL +ADK DSQDICFV + + +++ G A G+IV L G++LG H G+I+YTIG Sbjct: 176 RFGLIVADKPDSQDICFVPT-ELCERHRKLRPGAADPGEIVDLAGKVLGHHKGVIHYTIG 234 Query: 266 QRRGLGVAMG--EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDG 323 QRRGLG+ PL+VV LD ++ RVIVGP+E+L + + EINWLGD FE Sbjct: 235 QRRGLGIGGLGDHPLYVVKLDPDTRRVIVGPKEALATRLLRVAEINWLGDEPFESH--PE 292 Query: 324 FKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGI 382 + V+IRS++ P P ++ + V+ + E GV+ GQACVFY ++ + R+ GGG Sbjct: 293 REVSVRIRSTRAPRPAILRPLSATTAEVELIEPEEGVSPGQACVFYETEGS--RIFGGGW 350 Query: 383 I 383 I Sbjct: 351 I 351 >gi|329113810|ref|ZP_08242581.1| tRNA-specific 2-thiouridylase MnmA [Acetobacter pomorum DM001] gi|326696820|gb|EGE48490.1| tRNA-specific 2-thiouridylase MnmA [Acetobacter pomorum DM001] Length = 360 Score = 333 bits (855), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 181/367 (49%), Positives = 243/367 (66%), Gaps = 20/367 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR++VAMSGGVDSSVVAA L +G++V+G TLQLY+SR A+K KG+CCAGQD+ DAR V Sbjct: 1 MRILVAMSGGVDSSVVAARLLEEGHEVVGATLQLYDSRGAAK-KGACCAGQDIRDARAVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + HYV D E RF+++VI FA +YA+GETP+PCV CN+ VKF+DLL + R++GAD Sbjct: 60 DLLGFPHYVIDAERRFKDSVIERFADAYASGETPVPCVACNQGVKFTDLLGLAREIGADA 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199 +ATGHY+R G +G + RP D +RDQS+FLFATT+ QL LRFPLGDM K + Sbjct: 120 MATGHYVRR--VEGPEGAE---LHRPCDEDRDQSWFLFATTRDQLEFLRFPLGDMPDKAA 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A GL +A K DSQD+CFV G Y D+V++++ +A G+IV GQI+G+H G+ Sbjct: 175 VRKEAERFGLVVAGKPDSQDLCFVSDGSYVDLVEKMHPEMAGPGEIVDQQGQIVGQHEGV 234 Query: 260 INYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 + +T+GQ + LG A GE VV ++ RVI+GPRE V + +R +NWL Sbjct: 235 MRFTVGQSKRLGNAARLNGERQMVVGVEPGRRRVIIGPREKSFVTALSVRNVNWL----- 289 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 DA +G C V++R+ ++P V +G V E+ + A GQACVFY R Sbjct: 290 VDAPPEGLFCRVQMRAREEPRAARVVPTPEGAMVYLEEPAM-PAPGQACVFYQG----TR 344 Query: 377 VLGGGII 383 +LGGG I Sbjct: 345 ILGGGFI 351 >gi|255002942|ref|ZP_05277906.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU) [Anaplasma marginale str. Puerto Rico] gi|255004068|ref|ZP_05278869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU) [Anaplasma marginale str. Virginia] Length = 379 Score = 333 bits (855), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 177/383 (46%), Positives = 245/383 (63%), Gaps = 13/383 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 MV + L+ L K P++ VVVAMSGGVDSSVVAALL GY VIG T+QL++S A Sbjct: 1 MVFDGSLNLDPLVSGKPPEETTVVVAMSGGVDSSVVAALLHERGYKVIGATMQLHSSSPA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 S K SCC D+YDA+RV T+ HYV DYEE FR VI F +SY GETP+PCV C Sbjct: 61 SGAK-SCCGSVDIYDAKRVASTLGFPHYVLDYEEVFRREVIDDFINSYKRGETPIPCVKC 119 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N+TVKF D+L R +G DV+ATGHY+R G+ + + R D ++DQSYFLF+ Sbjct: 120 NQTVKFRDMLKAARAIGGDVVATGHYVRRVEIAGE-----QQILRGKDPQKDQSYFLFSV 174 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 T +QL LRFPLGD+ K +VR LA+++ L++ADK DSQDICFV + Y +V++ ++ Sbjct: 175 TSEQLKFLRFPLGDLAKSNVRLLAQQLNLEVADKPDSQDICFVPENSYREVLRNLDPASV 234 Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300 +G IVH++G++LG H+GI N+T+GQRRGL ++ PL+VV LD + V+VGP+ +L Sbjct: 235 KKGKIVHVDGRLLGEHDGISNFTVGQRRGLNISAPYPLYVVRLDAAQNTVVVGPQSALMK 294 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360 ++++ +NWL D + G ++RSS V + + DG + + V+ Sbjct: 295 RALFVKNLNWLPD---YNIPKRGLAVDARLRSSGATVRATITSDGDGYGTVVLEEDCVVS 351 Query: 361 SGQACVFYTSDSNEARVLGGGII 383 GQACV Y ++ R+LGGG I Sbjct: 352 PGQACVLY----DKERLLGGGWI 370 >gi|254994811|ref|ZP_05277001.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU) [Anaplasma marginale str. Mississippi] Length = 379 Score = 333 bits (854), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 177/383 (46%), Positives = 245/383 (63%), Gaps = 13/383 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 MV + L+ L K P++ VVVAMSGGVDSSVVAALL GY VIG T+QL++S A Sbjct: 1 MVFDGSLNLDPLVSGKPPEETTVVVAMSGGVDSSVVAALLHERGYKVIGATMQLHSSSPA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 S K SCC D+YDA+RV T+ HYV DYEE FR VI F +SY GETP+PCV C Sbjct: 61 SGAK-SCCGSVDIYDAKRVASTLGFPHYVLDYEEVFRREVIDDFINSYKRGETPIPCVKC 119 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N+TVKF D+L R +G DV+ATGHY+R G+ + + R D ++DQSYFLF+ Sbjct: 120 NQTVKFRDMLKAARAIGGDVVATGHYVRRVEIAGE-----QQILRGKDPQKDQSYFLFSV 174 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 T +QL LRFPLGD+ K +VR LA+++ L++ADK DSQDICFV + Y +V++ ++ Sbjct: 175 TSEQLKFLRFPLGDLAKSNVRLLAQQLNLEVADKPDSQDICFVPENSYREVLRNLDPASV 234 Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300 +G IVH++G++LG H+GI N+T+GQRRGL ++ PL+VV LD + V+VGP+ +L Sbjct: 235 KKGKIVHVDGRLLGEHDGISNFTVGQRRGLNISAPYPLYVVRLDAAQNAVVVGPQSALMK 294 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360 ++++ +NWL D + G ++RSS V + + DG + + V+ Sbjct: 295 RALFVKNLNWLPD---YNIPKRGLAVDARLRSSGATVRATITSDGDGYGTVVLEEDCVVS 351 Query: 361 SGQACVFYTSDSNEARVLGGGII 383 GQACV Y ++ R+LGGG I Sbjct: 352 PGQACVLY----DKERLLGGGWI 370 >gi|85375520|ref|YP_459582.1| tRNA-specific 2-thiouridylase MnmA [Erythrobacter litoralis HTCC2594] gi|122543295|sp|Q2N6A6|MNMA_ERYLH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|84788603|gb|ABC64785.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erythrobacter litoralis HTCC2594] Length = 384 Score = 333 bits (854), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 184/383 (48%), Positives = 238/383 (62%), Gaps = 21/383 (5%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 DL + + R+VVAMSGGVDSSVVAAL G +VIG+TLQLY+ A+ RKG+CCAG Sbjct: 17 FDLPRPAAESRIVVAMSGGVDSSVVAALAHASGAEVIGITLQLYDYGAATGRKGACCAGD 76 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DAR V D + ++HYVFD+E FR V+ FA Y +G TP+PC+ CN KF+DLL Sbjct: 77 DIQDARAVADRLGIAHYVFDHESAFREDVVEQFADDYLSGRTPVPCIRCNMGPKFTDLLR 136 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + R+LGAD LATGHY+R G+ G + R +D RDQSYFL+ TT+ QL LRFP Sbjct: 137 MARELGADCLATGHYVRR--VAGEHGPE---LHRALDPARDQSYFLYGTTETQLDFLRFP 191 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NG 250 LGD+ K +VR+LA GL A K DSQDICFV G Y +VK + GDIVH G Sbjct: 192 LGDLPKTAVRELAEAAGLRNAAKPDSQDICFVPDGDYAKIVKTMRPEGGTPGDIVHAQTG 251 Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 ++LG+H GI++YT+GQRRGL + EPL+VV LD +SRV VGP+ L V + E N Sbjct: 252 EVLGQHKGIVHYTVGQRRGLEIGGQPEPLYVVGLDAAASRVKVGPKRLLAVQAASVIETN 311 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVY--VDFEKSEVGVASGQACV 366 +G + K+RS PVP+ + + DG + FE+ E GVA GQA V Sbjct: 312 RIGP-------LPDVPLTAKVRSLAKPVPITLDGSLGDGATTRITFEQPEFGVAPGQAGV 364 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 Y D RV+GGG I ++ + Sbjct: 365 IYAGD----RVIGGGWIDSTESA 383 >gi|85709728|ref|ZP_01040793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erythrobacter sp. NAP1] gi|85688438|gb|EAQ28442.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erythrobacter sp. NAP1] Length = 390 Score = 332 bits (851), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 186/380 (48%), Positives = 238/380 (62%), Gaps = 20/380 (5%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 DL + + R+VVAMSGGVDSSVVAAL G +VIG+TLQLY+ A+ RKG+CCAG Sbjct: 21 FDLPRPASECRIVVAMSGGVDSSVVAALAADTGAEVIGITLQLYDYGAATGRKGACCAGD 80 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DAR V D + ++HYVFD+E FR V+ FA Y AG TP+PC+ CN KF+DL Sbjct: 81 DIADARAVSDRLGIAHYVFDHESAFREDVVEQFADEYLAGRTPVPCIRCNMGPKFTDLFR 140 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + R+LGAD LATGHY+R V +G + R D RDQSYFL+ATTQ+QL +RFP Sbjct: 141 MARELGADCLATGHYVRR---VEAEGGPH--LYRANDPSRDQSYFLYATTQEQLDFIRFP 195 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250 LG + K VR+LA GL A K DSQDICFV G Y +VK++ + G IVH G Sbjct: 196 LGGLPKTKVRELAEAAGLRNAAKPDSQDICFVPDGNYAGIVKKLRPEGGVPGAIVHAATG 255 Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 + LG H GII+YT+GQR+GL + EPL+V+ LD S V VGP+ L V + E N Sbjct: 256 ETLGDHKGIIHYTVGQRKGLEIGGQPEPLYVISLDAESREVRVGPKRMLGVESAEVIETN 315 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDG--VYVDFEKSEVGVASGQACV 366 +G A+ DG + K+RS PVPV ++ + DG V + FE+ E GVA GQA V Sbjct: 316 RIG------AIPDGAQLTAKVRSLAKPVPVTLEGDLGDGATVTLHFEQPEFGVAPGQAAV 369 Query: 367 FYTSDSNEARVLGGGIISGS 386 Y D RV+GGG I+ + Sbjct: 370 IYADD----RVIGGGWINAT 385 >gi|58616948|ref|YP_196147.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ehrlichia ruminantium str. Gardel] gi|75432674|sp|Q5FFJ0|MNMA_EHRRG RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|58416560|emb|CAI27673.1| Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ehrlichia ruminantium str. Gardel] Length = 370 Score = 332 bits (851), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 170/377 (45%), Positives = 237/377 (62%), Gaps = 14/377 (3%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +++ L +K P VVAMSGGVDSSV AALL + GY VIG+TLQLYN+ K S KG+C Sbjct: 6 KIDLLVKNKPPTSTTAVVAMSGGVDSSVAAALLHKLGYKVIGITLQLYNNNKNSNTKGAC 65 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 C D DA++V ++ HY +YE+ FR VI F +Y G+TP+PC+ CN+ +KF Sbjct: 66 CGSLDTKDAKQVASSMGFPHYTLNYEKVFREEVIEDFIDTYTQGKTPIPCIKCNQVIKFR 125 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL+ T+ LGADVL TGHYIR ++ DD + D ++DQSYFLFATT +QL Sbjct: 126 DLLNATKSLGADVLVTGHYIR-KIEQDDD----IYVYSSKDTKKDQSYFLFATTVEQLRL 180 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 LRFPLG+ KE +R LA+ L +A+K DSQ+ICFV Y + + +G+I+ Sbjct: 181 LRFPLGNFHKEDIRKLAKYFNLQVANKPDSQNICFVTD-TYKKTIAELRPHTIKKGNIID 239 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 +NG IL +HNGI+N+TIGQR+G+G++ PL+V+ L+ +++ V VGP+ +L +++Y+RE Sbjct: 240 INGNILSQHNGIVNFTIGQRKGIGISSKAPLYVIKLNPDTNEVTVGPKSALLQNKLYIRE 299 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACV 366 INWL E +G VK+RSS P + N++ + + S V GQACV Sbjct: 300 INWLAK---EKIPHNGLNVKVKLRSSHSGSPATIFPNNNNTATILLQDSYCTVTPGQACV 356 Query: 367 FYTSDSNEARVLGGGII 383 Y D R+LGGG I Sbjct: 357 IYDHD----RMLGGGWI 369 >gi|87198069|ref|YP_495326.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Novosphingobium aromaticivorans DSM 12444] gi|123487802|sp|Q2G2Z1|MNMA_NOVAD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|87133750|gb|ABD24492.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Novosphingobium aromaticivorans DSM 12444] Length = 384 Score = 332 bits (851), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 185/382 (48%), Positives = 236/382 (61%), Gaps = 21/382 (5%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 DLD R+VVAMSGGVDSSVVA L G +VIGVTLQLY+ A+ RKG+CCAG Sbjct: 14 FDLDGPMSARRIVVAMSGGVDSSVVAGLAAATGAEVIGVTLQLYDYGAATGRKGACCAGD 73 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DAR V D + ++HYVFD+E FR V+ FA Y +G TP+PCV CN KF+DLL+ Sbjct: 74 DIRDARAVADRLGIAHYVFDHESSFREEVVERFADDYLSGRTPIPCVRCNMGPKFTDLLA 133 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + R+LGAD LATGHY+R +G G + R +D RDQSYFL+ TT++QL LRFP Sbjct: 134 MARELGADCLATGHYVRR--VMGPAGPE---LHRAVDPARDQSYFLYGTTEEQLAFLRFP 188 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250 LG + K R +A E+GL +A K DSQDICFV G Y VV+ + G+IVH G Sbjct: 189 LGGLPKTETRLIAEELGLAVAAKPDSQDICFVPDGDYARVVRSVRPEGDAPGEIVHAATG 248 Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 ++LG H GII+YT+GQRRGL + EPL+V+ LD S RV+VGPR L V + E N Sbjct: 249 EVLGTHRGIIHYTVGQRRGLEIGGQPEPLYVIGLDAPSRRVLVGPRPMLAVASATIVETN 308 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN---DDGVYVDFEKSEVGVASGQACV 366 +G DA + K+RS PVPV ++ + + F + E GVA GQA V Sbjct: 309 RIGP--LPDAPLT-----AKVRSLARPVPVVLEGSFGEGASARIRFSQPEYGVAPGQAAV 361 Query: 367 FYTSDSNEARVLGGGIISGSKR 388 Y D RV+GGG I ++R Sbjct: 362 LYAGD----RVVGGGWIDSTER 379 >gi|205822510|sp|Q5FR73|MNMA_GLUOX RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 361 Score = 331 bits (849), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 183/373 (49%), Positives = 248/373 (66%), Gaps = 25/373 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR++VAMSGGVDSSVVAALLKR G++VIG TLQLY+ +A+K G+CCAG+D+ DAR V Sbjct: 1 MRILVAMSGGVDSSVVAALLKRQGHEVIGATLQLYDHGQAAK-PGACCAGRDIMDARAVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + HYV D E RFR++V+ FA +YA GETP+PCV CN+ VKF+DLL + R LG + Sbjct: 60 DRLGFPHYVIDAESRFRDSVVESFADAYARGETPVPCVACNQGVKFTDLLGMARDLGCEA 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199 +ATGHY+R G +G M RP+D ERDQ++FLFATT+ QL LRFPLG+M K Sbjct: 120 MATGHYVRR--VEGPEGAE---MHRPVDAERDQTWFLFATTKDQLDYLRFPLGEMPDKAH 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA+E+GL+IA K DSQDICFV G Y ++V+++ + EG+IV +G++LGRH G+ Sbjct: 175 VRALAQELGLEIAAKPDSQDICFVPSGSYAELVEKLRPEVRGEGEIVDEDGRVLGRHEGV 234 Query: 260 INYTIGQRRGLG---VAMGEPLFVVYLDKNSSRVIVGPR----ESLEVHRIYLREINWLG 312 YT+GQ + LG A GE V +D R++VGPR E+ + LR++NWL Sbjct: 235 ARYTVGQSKRLGDIHTATGERQMVTRIDVPKRRIVVGPRVQVSEADSRRSVRLRDMNWL- 293 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV-ASGQACVFYTSD 371 DA +G +C V+IR+ + V+ ++G + E +E + A GQACV Y Sbjct: 294 ----IDAPAEGVRCGVQIRAREKLREALVKPLENGGAL-VELTEAAMPAPGQACVLY--- 345 Query: 372 SNEARVLGGGIIS 384 + +RVLGGG I+ Sbjct: 346 -DGSRVLGGGFIT 357 >gi|88608438|ref|YP_506353.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neorickettsia sennetsu str. Miyayama] gi|123491921|sp|Q2GDU3|MNMA_NEOSM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|88600607|gb|ABD46075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neorickettsia sennetsu str. Miyayama] Length = 371 Score = 330 bits (847), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 171/366 (46%), Positives = 240/366 (65%), Gaps = 15/366 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGSCCAGQDVYDARR 78 D++V+VAMSGGVDSS VAA L R GY VIGVTLQL+N+ +++ + +CCAG D++DA+R Sbjct: 18 DVKVMVAMSGGVDSSTVAAYLHRVGYKVIGVTLQLHNNFTSTQTNRKTCCAGSDIFDAKR 77 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V HYV + EE FR VI FA SY GETP+PCV CN+TVKF DL+ + + L Sbjct: 78 VAAQFGFLHYVVNMEETFRKEVIENFAESYLKGETPVPCVKCNQTVKFRDLMKIAKSLSV 137 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY+R RL + + + + +D +DQSYFLF TT++QL LRFPLG++KK Sbjct: 138 DALATGHYVR-RLTTTNGVE----LHKGIDPSKDQSYFLFNTTREQLEFLRFPLGNLKKS 192 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 RDLAR++ +DI++K +SQDICFV Y DV+K+ G I+ +G++LG HNG Sbjct: 193 ETRDLARKLSVDISEKPESQDICFVNGKSYADVIKKFRPDAQRPGKILSTDGEVLGTHNG 252 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I+YTIGQR GL ++ PL+VV +D ++ +IVG R+ L+ +Y++E+NWL Sbjct: 253 TIHYTIGQRHGLQLSAPIPLYVVKIDAQNNIIIVGTRDKLQQRSLYVKEVNWLD----RK 308 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYTSDSNEARV 377 + G +C VK+RS D V ++ N + + V E+ + +A GQACV Y + ++V Sbjct: 309 ELTAGLECEVKLRSGADTVKGYLYPNGELLKVSLAEEPKCAIAPGQACVMY----HGSKV 364 Query: 378 LGGGII 383 LGGG I Sbjct: 365 LGGGWI 370 >gi|149185324|ref|ZP_01863641.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erythrobacter sp. SD-21] gi|148831435|gb|EDL49869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erythrobacter sp. SD-21] Length = 383 Score = 329 bits (843), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 183/384 (47%), Positives = 235/384 (61%), Gaps = 21/384 (5%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 DL+K + R+VVAMSGGVDSSVVAAL + G +VIG+TLQLY+ A+ RKG+CCAG Sbjct: 16 FDLEKPASESRIVVAMSGGVDSSVVAALAAKSGAEVIGITLQLYDYGAATGRKGACCAGD 75 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DAR V D + ++HYV D+E FR V+ FA Y AG TP+PC+ CN KF+DL + Sbjct: 76 DIADARAVADRLGIAHYVSDHESAFREEVVETFADEYLAGRTPVPCIRCNMGPKFTDLFA 135 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + R+LGAD LATGHY++ RL +G G + R D RDQSYFL+ATT+ QL LRFP Sbjct: 136 MARELGADCLATGHYVQ-RL-MGPAGPE---LHRANDPARDQSYFLYATTEDQLNFLRFP 190 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250 LG + K VR+LA GL A K DSQDICFV G Y +VK++ A G IVH G Sbjct: 191 LGGLPKAQVRELAEAAGLRNAAKPDSQDICFVPDGDYAKIVKKMRPEGAAPGAIVHAATG 250 Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 + LG H G+++YT+GQRRGL + EPL+VV +D + ++V VGP+ L V +L E N Sbjct: 251 EELGTHKGVVHYTVGQRRGLEIGGQPEPLYVVGIDADQAQVKVGPKRMLAVSAAHLVETN 310 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ---RNDDGVYVDFEKSEVGVASGQACV 366 +G + K+RS PVP+ + + FE E GVA GQA V Sbjct: 311 RIGP-------LPDVPLTAKVRSLAKPVPITLDGPLGEGAATTLRFETPEFGVAPGQAAV 363 Query: 367 FYTSDSNEARVLGGGIISGSKRSD 390 Y D RVLGGG I + R D Sbjct: 364 IYAGD----RVLGGGWIDSTTRCD 383 >gi|57238956|ref|YP_180092.1| tRNA-specific 2-thiouridylase MnmA [Ehrlichia ruminantium str. Welgevonden] gi|58578889|ref|YP_197101.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ehrlichia ruminantium str. Welgevonden] gi|81557340|sp|Q5HBV2|MNMA_EHRRW RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|57161035|emb|CAH57941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ehrlichia ruminantium str. Welgevonden] gi|58417515|emb|CAI26719.1| Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ehrlichia ruminantium str. Welgevonden] Length = 370 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 169/377 (44%), Positives = 236/377 (62%), Gaps = 14/377 (3%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +++ L +K P VVAMSGGVDSSV AALL + GY VIG+TLQLYN+ S KG+C Sbjct: 6 KIDLLVKNKPPTSTTAVVAMSGGVDSSVAAALLHKLGYKVIGITLQLYNNNNNSNTKGAC 65 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 C D DA++V ++ HY +YE+ FR VI F +Y G+TP+PC+ CN+ +KF Sbjct: 66 CGSLDTQDAKQVASSMGFPHYTLNYEKVFREEVIEDFIDTYTQGKTPIPCIKCNQVIKFR 125 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL+ T+ LGADVL TGHYIR ++ DD + D ++DQSYFLFATT +QL Sbjct: 126 DLLNATKSLGADVLVTGHYIR-KIEQDDD----IYVYSSKDTKKDQSYFLFATTVEQLRL 180 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 LRFPLG+ KE +R LA+ L +A+K DSQ+ICFV Y + + +G+I+ Sbjct: 181 LRFPLGNFHKEDIRKLAKYFNLQVANKPDSQNICFVTD-TYKKTIAELRPHTIKKGNIID 239 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 +NG IL +HNGI+N+TIGQR+G+G++ PL+V+ L+ +++ V VGP+ +L +++Y+RE Sbjct: 240 INGNILSQHNGIVNFTIGQRKGIGISSKAPLYVIKLNPDTNEVTVGPKSALLQNKLYIRE 299 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACV 366 INWL E +G VK+RSS P + N++ + + S V GQACV Sbjct: 300 INWLAK---EKIPHNGLNVKVKLRSSHSGSPATIFPNNNNTATILLQDSYCTVTPGQACV 356 Query: 367 FYTSDSNEARVLGGGII 383 Y D R+LGGG I Sbjct: 357 IYDHD----RMLGGGWI 369 >gi|256092379|ref|XP_002581921.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methy lt ransferase [Schistosoma mansoni] gi|238668268|emb|CAZ38161.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methy lt ransferase,putative [Schistosoma mansoni] Length = 313 Score = 323 bits (827), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 158/299 (52%), Positives = 209/299 (69%), Gaps = 8/299 (2%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQD 72 DK P + VVAMSGGVDSSV A LL R GY VIGVTLQLY + +++KG CCAGQD Sbjct: 13 DKVPHQTKAVVAMSGGVDSSVAAVLLHRLGYQVIGVTLQLYGADGNSNTRKKGVCCAGQD 72 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 +YDA+RV + HY+ +YEE F+ VI FA +Y G+TP+PC+ CN+TVKF DLL V Sbjct: 73 IYDAKRVAEGTGFPHYILNYEEIFKKEVIESFAQTYIQGKTPIPCIKCNQTVKFRDLLQV 132 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 TR LGADVL TGHY+R RL + K +CR +D +DQSYFLFATT++QL LRFPL Sbjct: 133 TRNLGADVLITGHYVR-RLEKNGEVK----LCRGIDKSKDQSYFLFATTKEQLKLLRFPL 187 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G K +VR LAR L I++K DSQDICFV + Y + ++ +G IV +NG++ Sbjct: 188 GGFYKCNVRKLARYFSLPISEKPDSQDICFVSEN-YSKTIAKLAPQSIQKGKIVDVNGKV 246 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 LG HNGI+N+T+GQR+GLG+A EPL+VV ++ ++ ++VGP +L +I ++E+NWL Sbjct: 247 LGEHNGIVNFTVGQRKGLGIAYSEPLYVVRINTKNNEIVVGPVNALMQRKILVKELNWL 305 >gi|58039815|ref|YP_191779.1| tRNA-specific 2-thiouridylase MnmA [Gluconobacter oxydans 621H] gi|58002229|gb|AAW61123.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Gluconobacter oxydans 621H] Length = 355 Score = 322 bits (826), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 179/367 (48%), Positives = 242/367 (65%), Gaps = 25/367 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSVVAALLKR G++VIG TLQLY+ +A+K G+CCAG+D+ DAR V D + Sbjct: 1 MSGGVDSSVVAALLKRQGHEVIGATLQLYDHGQAAK-PGACCAGRDIMDARAVADRLGFP 59 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 HYV D E RFR++V+ FA +YA GETP+PCV CN+ VKF+DLL + R LG + +ATGHY Sbjct: 60 HYVIDAESRFRDSVVESFADAYARGETPVPCVACNQGVKFTDLLGMARDLGCEAMATGHY 119 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDLAR 205 +R G +G M RP+D ERDQ++FLFATT+ QL LRFPLG+M K VR LA+ Sbjct: 120 VRR--VEGPEGAE---MHRPVDAERDQTWFLFATTKDQLDYLRFPLGEMPDKAHVRALAQ 174 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 E+GL+IA K DSQDICFV G Y ++V+++ + EG+IV +G++LGRH G+ YT+G Sbjct: 175 ELGLEIAAKPDSQDICFVPSGSYAELVEKLRPEVRGEGEIVDEDGRVLGRHEGVARYTVG 234 Query: 266 QRRGLG---VAMGEPLFVVYLDKNSSRVIVGPR----ESLEVHRIYLREINWLGDGLFED 318 Q + LG A GE V +D R++VGPR E+ + LR++NWL D Sbjct: 235 QSKRLGDIHTATGERQMVTRIDVPKRRIVVGPRVQVSEADSRRSVRLRDMNWL-----ID 289 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV-ASGQACVFYTSDSNEARV 377 A +G +C V+IR+ + V+ ++G + E +E + A GQACV Y + +RV Sbjct: 290 APAEGVRCGVQIRAREKLREALVKPLENGGAL-VELTEAAMPAPGQACVLY----DGSRV 344 Query: 378 LGGGIIS 384 LGGG I+ Sbjct: 345 LGGGFIT 351 >gi|326403958|ref|YP_004284040.1| tRNA-specific 2-thiouridylase MnmA [Acidiphilium multivorum AIU301] gi|325050820|dbj|BAJ81158.1| tRNA-specific 2-thiouridylase MnmA [Acidiphilium multivorum AIU301] Length = 345 Score = 320 bits (820), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 177/364 (48%), Positives = 226/364 (62%), Gaps = 21/364 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MRVVVAMSGGVDSSVVA L+ G++VIGVTLQLY+ A+ RKG+CCAGQD++DAR V Sbjct: 1 MRVVVAMSGGVDSSVVAGLMHEAGHEVIGVTLQLYDHGAATSRKGACCAGQDIHDARNVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + ++HYV D E FR AVI FA SYA G TP+PCV CN+ +KF DLL + R LGA+ Sbjct: 61 DRLGIAHYVIDAEAAFRAAVIGDFAESYAEGRTPVPCVRCNQHLKFGDLLGLARDLGAEA 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199 LATGHY+R +DG + R +D RDQS+FLFATT+ QL RFPLG M K++ Sbjct: 121 LATGHYVRR-----EDGPEGAELHRAVDARRDQSWFLFATTRDQLAFSRFPLGTMPDKDA 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A M L +A+K DSQDICFV G Y D+V ++ A G+IV +G +L RH GI Sbjct: 176 VRAEAARMNLPVAEKPDSQDICFVPSGTYADIVAKLRPDAAAPGEIVTEDGAVLDRHQGI 235 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YT+GQ + LG A G V +D R++VGPR + + + E NWL D Sbjct: 236 ARYTVGQAKRLGAASGH--VVTRIDAARRRIVVGPRGA-GGREVRIAEPNWL-----IDP 287 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 F+ VK+R+ + P P + + V +D + A GQACV Y E+RVLG Sbjct: 288 PAAPFRASVKLRAGETPHPAEIDIARNLVTLD---TPALAAPGQACVVY----RESRVLG 340 Query: 380 GGII 383 GG I Sbjct: 341 GGFI 344 >gi|148260759|ref|YP_001234886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidiphilium cryptum JF-5] gi|205811039|sp|A5FZD5|MNMA_ACICJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|146402440|gb|ABQ30967.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidiphilium cryptum JF-5] Length = 345 Score = 320 bits (819), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 177/364 (48%), Positives = 226/364 (62%), Gaps = 21/364 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MRVVVAMSGGVDSSVVA L+ G++VIGVTLQLY+ A+ RKG+CCAGQD++DAR V Sbjct: 1 MRVVVAMSGGVDSSVVAGLMHEAGHEVIGVTLQLYDHGAATGRKGACCAGQDIHDARNVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + ++HYV D E FR AVI FA SYA G TP+PCV CN+ +KF DLL + R LGA+ Sbjct: 61 DRLGIAHYVIDAEAAFRAAVIGDFAESYAEGRTPVPCVRCNQHLKFGDLLGLARDLGAEA 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199 LATGHY+R +DG + R +D RDQS+FLFATT+ QL RFPLG M K++ Sbjct: 121 LATGHYVRR-----EDGPEGAELHRAVDARRDQSWFLFATTRDQLAFSRFPLGTMPDKDA 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A M L +A+K DSQDICFV G Y D+V ++ A G+IV +G +L RH GI Sbjct: 176 VRAEAARMNLPVAEKPDSQDICFVPSGTYADIVAKLRPDAAAPGEIVTEDGAVLDRHQGI 235 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YT+GQ + LG A G V +D R++VGPR + + + E NWL D Sbjct: 236 ARYTVGQAKRLGAASGH--VVTRIDAARRRIVVGPRGA-GGREVRIAEPNWL-----IDP 287 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 F+ VK+R+ + P P + + V +D + A GQACV Y E+RVLG Sbjct: 288 PAAPFRASVKLRAGETPHPAEIDIARNLVTLD---TPALAAPGQACVVY----RESRVLG 340 Query: 380 GGII 383 GG I Sbjct: 341 GGFI 344 >gi|73666857|ref|YP_302873.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyl transferase [Ehrlichia canis str. Jake] gi|123615064|sp|Q3YSN0|MNMA_EHRCJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|72393998|gb|AAZ68275.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ehrlichia canis str. Jake] Length = 367 Score = 319 bits (818), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 170/382 (44%), Positives = 231/382 (60%), Gaps = 27/382 (7%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +++ L +K+P VVVAMSGGVDSSV AALL + GY VIG+TLQLYN+ KG C Sbjct: 6 KIDPLVKNKSPSSTTVVVAMSGGVDSSVAAALLHKLGYKVIGITLQLYNNTSG---KGGC 62 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 C D DA++V ++ HY +YE+ FR VI F +Y G+TP+PCV CN+ +KF Sbjct: 63 CGSTDTQDAKQVASSMGFPHYTLNYEKAFREEVIENFIDTYTQGKTPIPCVKCNQVIKFR 122 Query: 128 DLLSVTRQLGADVLATGHYIRS-----RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 DLL+ T+ LGADVL TGHYIR +YV D ++DQSYFLFATT Sbjct: 123 DLLNTTKSLGADVLVTGHYIRKVEQDDEIYVYSS----------KDTKKDQSYFLFATTI 172 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 +QL LRFPLG+ K+++R LA+ L +A K DSQ+ICFV Y + + + + Sbjct: 173 EQLKFLRFPLGNFHKDNIRKLAKYFNLSVAAKPDSQNICFVTD-TYKNTIAHLRPQTVKK 231 Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302 G I+ NG ILG HNGI+N+TIGQRRG+G+A EPL+V L+ +++ V VGP+ +L ++ Sbjct: 232 GHIIDTNGNILGEHNGIVNFTIGQRRGIGLASKEPLYVTKLNPDTNEVTVGPKSALLQNK 291 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVAS 361 +++ +INWL L + G VK+RSS + ND + V + + V Sbjct: 292 LHIEDINWL---LKDKIPYSGLSVKVKLRSSHSGSTAIIYPNDMNKATVILQDTYCTVTP 348 Query: 362 GQACVFYTSDSNEARVLGGGII 383 GQACV Y D R+LGGG I Sbjct: 349 GQACVVYDGD----RMLGGGWI 366 >gi|88607883|ref|YP_505483.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaplasma phagocytophilum HZ] gi|123494742|sp|Q2GJG8|MNMA_ANAPZ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|88598946|gb|ABD44416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaplasma phagocytophilum HZ] Length = 378 Score = 318 bits (816), Expect = 7e-85, Method: Compositional matrix adjust. Identities = 175/377 (46%), Positives = 241/377 (63%), Gaps = 15/377 (3%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +L+SL K P++ VVVAMSGGVDSSVVA LL + GY VIG T+QLY+S AS K SC Sbjct: 6 QLDSLVPGKRPEETTVVVAMSGGVDSSVVAVLLHKMGYKVIGATMQLYSSPNASSGK-SC 64 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 C D+YDA++V + HYV +YEE FR VI F +SY AGETP+PC+ CN+TVKF Sbjct: 65 CGNADIYDAKKVAASFGFPHYVLNYEEVFRKEVIEDFVNSYKAGETPIPCIKCNQTVKFR 124 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 D+L + R +G DV+ATGHY+R RL V +G+ + + D +DQSYFLF+ T +QL Sbjct: 125 DMLKMARTIGGDVVATGHYVR-RLEV--EGELQ--IWSGKDKNKDQSYFLFSMTLEQLKF 179 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 +RFPLG++ K VR +A+ + +++ADK DSQDICFV + Y + ++ +G I H Sbjct: 180 VRFPLGNLVKGDVRKIAQYLNIEVADKPDSQDICFVPK-NYKKTLASLDPSAIKKGKIHH 238 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 ++G +LG H+GI N+T+GQR+GLG+A PL+VV LD + VIVGP SL +++LR+ Sbjct: 239 IDGSVLGEHDGIANFTVGQRKGLGIAYPYPLYVVALDPVKNTVIVGPSSSLVKTQLFLRD 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACV 366 +NWL + G V++RSS V + R+ DG V+ GQACV Sbjct: 299 LNWLSKDQIPE---HGLSASVRLRSSSSAVQATISRSAKDGKGRVVLHEGCVVSPGQACV 355 Query: 367 FYTSDSNEARVLGGGII 383 Y ++ R+LGGG I Sbjct: 356 IYDNE----RLLGGGWI 368 >gi|218506374|ref|ZP_03504252.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhizobium etli Brasil 5] Length = 229 Score = 305 bits (782), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 138/219 (63%), Positives = 172/219 (78%) Query: 94 ERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYV 153 +RFR VI PFA SY AGETP+PCV CN+TVKF+DLL+ ++LGAD LATGHYIRSR Sbjct: 11 KRFRETVINPFAESYVAGETPIPCVSCNQTVKFADLLATAKELGADALATGHYIRSRPNP 70 Query: 154 GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIAD 213 + RR + RP D +RDQSYFLFATTQ+Q+ LRFPLG + K R LA EMGL +A Sbjct: 71 SPEHPGRRALFRPADADRDQSYFLFATTQEQIDYLRFPLGGLPKAETRRLAEEMGLVVAK 130 Query: 214 KSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVA 273 K+DSQDICFV QGKY D++ ++ AL G+IVHL+G++LG H GI+++TIGQRRG+G+A Sbjct: 131 KADSQDICFVPQGKYSDIITKLKPNAALAGEIVHLDGRVLGSHEGILHFTIGQRRGIGIA 190 Query: 274 MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 GEPL+VVYLD S RVIVGP+E+LE HR+YLR++NWLG Sbjct: 191 TGEPLYVVYLDARSRRVIVGPKEALETHRVYLRDVNWLG 229 >gi|68171265|ref|ZP_00544667.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ehrlichia chaffeensis str. Sapulpa] gi|88657652|ref|YP_507667.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ehrlichia chaffeensis str. Arkansas] gi|123492948|sp|Q2GFW6|MNMA_EHRCR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|67999312|gb|EAM85959.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ehrlichia chaffeensis str. Sapulpa] gi|88599109|gb|ABD44578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ehrlichia chaffeensis str. Arkansas] Length = 367 Score = 304 bits (779), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 164/378 (43%), Positives = 235/378 (62%), Gaps = 19/378 (5%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +++ L +K+P VVAMSGGVDSSV AALL + GY VIG+TLQLYN+ KG+C Sbjct: 6 KIDPLVKNKSPSATTAVVAMSGGVDSSVAAALLHKLGYKVIGITLQLYNNTTG---KGAC 62 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 C D DA++V + HY +YE+ F+ VI F +Y G+TP+PC+ CN+ VKF Sbjct: 63 CGSLDTQDAKQVASIMGFPHYTLNYEKVFKEEVIDDFIDTYMQGKTPIPCIKCNQVVKFR 122 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL+ T+ L AD+L TGHYIR ++ DD + D ++DQSYFLFATT +QL Sbjct: 123 DLLNATKSLDADILVTGHYIR-KIEQDDD----IYVYSSKDTKKDQSYFLFATTIEQLKF 177 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 LRFPLG+ K+++R LA L IA+K DSQ+ICFV Y + + ++ +G+I+ Sbjct: 178 LRFPLGNFHKDNIRKLAEHFNLPIANKPDSQNICFVAD-TYKNTIAQLRPNAIKKGNIID 236 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 +G ILG+H+GI+N+TIGQRRG+G++ EPL+V+ L+ +++ V VG + +L +++++ + Sbjct: 237 TSGNILGQHDGIVNFTIGQRRGIGLSSKEPLYVIKLNPDTNEVTVGHKSALLQNKLHIEK 296 Query: 308 INWLGDGLFEDAVVD-GFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365 INW L +D + G VK+RSS V ND+ V + + V GQAC Sbjct: 297 INW----LVKDKIPHTGLNVKVKLRSSHSGSTAIVYPNDNNKATVLLQDTYCTVTPGQAC 352 Query: 366 VFYTSDSNEARVLGGGII 383 V Y D R+LGGG I Sbjct: 353 VIYDGD----RMLGGGWI 366 >gi|117924260|ref|YP_864877.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Magnetococcus sp. MC-1] gi|205816907|sp|A0L678|MNMA_MAGSM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|117608016|gb|ABK43471.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Magnetococcus sp. MC-1] Length = 358 Score = 296 bits (758), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 163/368 (44%), Positives = 218/368 (59%), Gaps = 16/368 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDA 76 + RV VAMSGGVDSS AALL GY+VIG+T+QL++ + K GS CCA D+YDA Sbjct: 3 QPQRVAVAMSGGVDSSATAALLVEQGYEVIGLTMQLWD-HSSPKVAGSRSCCALDDLYDA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R+V T+ + +YV +YE FR AV+ F +YAAG+TP PCV CN+ +KF LL L Sbjct: 62 RQVAQTLGIPYYVVNYEADFRQAVVDDFIQTYAAGQTPNPCVRCNQILKFDLLLKKALAL 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD LATGHY R +D + + + D +DQSYFLF TT QL +RFPLG+M Sbjct: 122 GADFLATGHYAIRR----EDAQGVPQLWQGSDPAKDQSYFLFTTTMAQLAHVRFPLGEMD 177 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ R LA+ GL ++ K +SQD+CFV G Y + + G IV G LG+H Sbjct: 178 KQQTRQLAQRFGLHLSTKQESQDVCFVPDGDYSAFFAKQAPHLLTPGAIVDQQGHSLGQH 237 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G+ YT+GQR+GLG+A PL+V+ LD ++VIVGP E+L ++ L +NWL Sbjct: 238 KGLGCYTVGQRKGLGIAHPTPLYVLALDAPHNQVIVGPAEALYQQQLTLHHVNWLE---- 293 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + F KIR + PV V+ D G + F + + + GQACVFY + A Sbjct: 294 PTPPTEPFASMAKIRYAAPPVEARVEPLPDGGAQIYFNQPQRAITPGQACVFY----DGA 349 Query: 376 RVLGGGII 383 RV+GGG I Sbjct: 350 RVVGGGWI 357 >gi|299138824|ref|ZP_07032001.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidobacterium sp. MP5ACTX8] gi|298598978|gb|EFI55139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidobacterium sp. MP5ACTX8] Length = 375 Score = 293 bits (750), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 155/385 (40%), Positives = 226/385 (58%), Gaps = 24/385 (6%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-------KGSCCAG 70 P + + VAMSGGVDSS VAALL +G D+IG+TLQL+N R+ + R +G CC+ Sbjct: 2 PLNNTIAVAMSGGVDSSAVAALLHAEGRDLIGLTLQLWNQRRLAGREGMPETVQGRCCSI 61 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 DVYDARRV + I + +Y+ + +ERF N V+ PF Y AG TP+PC CN +KF LL Sbjct: 62 DDVYDARRVAEQIGIPYYLVNAQERFENEVVRPFVDEYLAGRTPIPCTLCNNHLKFDQLL 121 Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 RQ+GAD +ATGHY R+ D+ + R ++ RP D +DQ+YFLF TQ QL F Sbjct: 122 LTARQIGADRIATGHYARNHY---DEARERWVLSRPADKSKDQTYFLFGLTQDQLSRTLF 178 Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI--NAGIAL---EGDI 245 PLG+M+K +VR +A + GL++A K DSQ+ICF+ G Y +K G L G++ Sbjct: 179 PLGEMQKPAVRSMAADHGLELAQKPDSQEICFIPGGSYSQFLKAYLDEQGRELPDSSGEL 238 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 V +G++LG H GI +T+GQR+GLG++ +PL+V+ + +S V VG + L + Sbjct: 239 VSASGEVLGHHEGIHGFTVGQRKGLGLSSPQPLYVLNIHPDSHAVQVGTDDQLLSRTLIA 298 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQA 364 +NW+ ++ + + +KIR +P P ++ D V F++ + + GQ+ Sbjct: 299 DRLNWVSIPEPKEEI----RVTIKIRHRHEPAPATLRVTAFDRVEATFDEPQRAITPGQS 354 Query: 365 CVFYTSDSNEARVLGGGIISGSKRS 389 VFY D V GGG I R+ Sbjct: 355 AVFYQGDE----VAGGGWIKAEDRA 375 >gi|322434612|ref|YP_004216824.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidobacterium sp. MP5ACTX9] gi|321162339|gb|ADW68044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidobacterium sp. MP5ACTX9] Length = 379 Score = 292 bits (748), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 158/389 (40%), Positives = 223/389 (57%), Gaps = 31/389 (7%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-------KG 65 DL + P+ + VAMSGGVDSS VAALL GYD+IG+TLQL+N R+ + +G Sbjct: 3 DLSQIPET--IAVAMSGGVDSSAVAALLHEQGYDLIGLTLQLWNQRRLAGHEGMPESVQG 60 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 CC+ DVYDARRV + I + +Y+ + +ERF V+ PF S Y AG TP+PC CN +K Sbjct: 61 RCCSIDDVYDARRVAEKIGIPYYLVNQQERFEADVVKPFVSEYLAGRTPIPCTLCNNHLK 120 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F LL RQ+GA +ATGHY R+R D+ R I+ RP D +DQ+YFLF TQ QL Sbjct: 121 FDQLLLTARQVGATKIATGHYARNRF---DEATGRWILSRPADRSKDQTYFLFGLTQDQL 177 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI--NAGIAL-- 241 FPLG+M+K +VR +A E GLD+A K DSQ+ICF+ G Y ++ G L Sbjct: 178 AHTLFPLGEMQKPAVRVMATEAGLDVAAKPDSQEICFIPGGDYQTFLRAYLDEQGEELPD 237 Query: 242 -EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300 G++V +G+++GRH GI N+T+GQR+GLG+ PL+V+ + +S +V VG L Sbjct: 238 SSGELVTSSGEVVGRHTGIHNFTVGQRKGLGLTSANPLYVLAIHPDSHQVQVGSDAELMT 297 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD------FEK 354 + +NW+ + + + K+R +P P + G D F++ Sbjct: 298 RELRANRLNWISI----PEITEPIRVLAKVRHRHEPQPATLSSGGIGPDGDPIAIAIFDE 353 Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGII 383 + + GQA +FY D V+GGG I Sbjct: 354 PQRAITPGQAAIFYREDD----VVGGGWI 378 >gi|308513324|ref|NP_953615.2| tRNA-specific 2-thiouridylase MnmA [Geobacter sulfurreducens PCA] gi|81701559|sp|Q74A22|MNMA_GEOSL RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|41152729|gb|AAR35942.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacter sulfurreducens PCA] gi|298506604|gb|ADI85327.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34)-thioltransferase [Geobacter sulfurreducens KN400] Length = 365 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 166/369 (44%), Positives = 215/369 (58%), Gaps = 18/369 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG----SCCAGQDVYDAR 77 R+V+AMSGGVDSSV AALLK +G++VIG+++Q+++ + +G +CC+ D++DAR Sbjct: 8 RIVIAMSGGVDSSVAAALLKEEGHEVIGISMQVWDYANFAAPEGEKFDTCCSLDDIHDAR 67 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV + I + YV ++EE FR VI F Y G TP PCV CN+ VKF LL R+LG Sbjct: 68 RVAEQIGIPFYVVNFEEEFRRLVIDDFVDEYFRGRTPNPCVRCNQRVKFELLLHKARELG 127 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD LATGHY +R G+DG + R +D +DQSYFLF TQ QL FPLG+M K Sbjct: 128 ADFLATGHY--ARRVRGEDGLYH--LLRGLDPAKDQSYFLFTLTQDQLARTLFPLGEMTK 183 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 E VR LA E GL +A+K +SQ+ICFV Y ++ + G+IV G +LGRH Sbjct: 184 EQVRRLAAERGLRVAEKGESQEICFVPDDDYVRFLEEERGTGLMAGEIVDRKGNVLGRHG 243 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 G YT+GQRRGLG+A PL+VV +D +VIVGP E L + E+ W+ + Sbjct: 244 GTYRYTVGQRRGLGIAHPTPLYVVGVDAERRQVIVGPAEELLATGLTATEVTWVVPPQGQ 303 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + KIR PVP V R D V F + E V GQA VFY D Sbjct: 304 TV-----EASCKIRYRHQPVPCTVAVRADGSAEVRFRQPEKSVTPGQAVVFYRDDE---- 354 Query: 377 VLGGGIISG 385 VLGGG I G Sbjct: 355 VLGGGWIEG 363 >gi|148263558|ref|YP_001230264.1| tRNA-specific 2-thiouridylase MnmA [Geobacter uraniireducens Rf4] gi|205816712|sp|A5GE36|MNMA_GEOUR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|146397058|gb|ABQ25691.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacter uraniireducens Rf4] Length = 375 Score = 289 bits (740), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 162/374 (43%), Positives = 224/374 (59%), Gaps = 18/374 (4%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG----SCCAGQ 71 KN K RVV+AMSGGVDSSV AALLK +G++VIG+++Q+++ + + +G +CC+ Sbjct: 3 KNNKRKRVVIAMSGGVDSSVAAALLKEEGHEVIGISMQVWDYTRFTAEEGEKFDTCCSLD 62 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D++DARRV + + + YV ++EE F+N VI F + Y G TP PCV CN+ +KF LL Sbjct: 63 DIHDARRVAEQLEIPFYVVNFEEEFQNLVIDDFVNEYLLGRTPNPCVRCNQWIKFELLLK 122 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 R LGAD++ATGHY R+ D R R+M + +D +DQSYFLF TQ+QL FP Sbjct: 123 KARGLGADMIATGHYARTE---QDADGRYRLM-KGVDPAKDQSYFLFTLTQEQLAMTLFP 178 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG M K+ VR LA GL +A+K +SQ+ICFV Y ++ L G+IV G+ Sbjct: 179 LGGMTKQEVRALAAGYGLRVAEKGESQEICFVPDNDYVRFIEEERGKQLLSGNIVDRKGK 238 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 +LG H+G YT+GQR+GLG+A EPL+V+ +D V VGPR++L + INW+ Sbjct: 239 VLGVHDGTYRYTVGQRKGLGIAHPEPLYVLGVDAARKEVTVGPRDALYSDGLIATAINWI 298 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 E A+ + KIR P+P + D+ V F + E V GQA VFY Sbjct: 299 AP-TPETAI----EASCKIRYRHHPIPCRILPLADNRAEVRFTEREKSVTPGQAVVFYDG 353 Query: 371 DSNEARVLGGGIIS 384 D+ VLGGG I Sbjct: 354 DT----VLGGGWIE 363 >gi|296133414|ref|YP_003640661.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermincola sp. JR] gi|296031992|gb|ADG82760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermincola potens JR] Length = 358 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 158/367 (43%), Positives = 220/367 (59%), Gaps = 14/367 (3%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 PK +VVVAMSGGVDSS+ AALL+ GYDVIGVT+Q++ + + ++ G CC+ V DAR Sbjct: 2 PKS-KVVVAMSGGVDSSLAAALLQEQGYDVIGVTMQIWPAEEQAE--GGCCSLAAVEDAR 58 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV DT+ + +YV ++ + FR VI F + Y AG TP PC+ CNR VKF LL LG Sbjct: 59 RVADTLGIPYYVMNFRDLFRKTVIADFCAEYMAGRTPNPCIVCNRKVKFEALLQKALALG 118 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A+ +ATGHY R D+ +RR +M R +D +DQ+Y L+ TQ QL PLG+ K Sbjct: 119 AEYIATGHYARLSY---DEARRRYLMRRALDRGKDQTYALYNLTQYQLKHTLMPLGNYTK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 R++A ++GL +A+K DSQ+ICFV Y ++ G + L G +LGRH Sbjct: 176 AEAREMAAKLGLRVANKPDSQEICFVTDNNYRRFLEENVDQEIKPGPFLDLEGNVLGRHE 235 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI YTIGQR+GLG+A+G+P++VV +D + VI+G E + + + N+ ++ Sbjct: 236 GIPFYTIGQRKGLGIALGKPMYVVDIDPERNAVILGSNEDVFARGLISTDNNF----IYI 291 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + D + VKIR S P + +DDGV V+FEK + V GQA VFY D V Sbjct: 292 PELKDPMEVEVKIRYSAQPAKAIIYPHDDGVRVEFEKPQRAVTPGQAAVFYKDDY----V 347 Query: 378 LGGGIIS 384 +GGG I Sbjct: 348 VGGGTIK 354 >gi|322419745|ref|YP_004198968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacter sp. M18] gi|320126132|gb|ADW13692.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacter sp. M18] Length = 356 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 158/364 (43%), Positives = 213/364 (58%), Gaps = 16/364 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVC 80 R+VVAMSGGVDSSV AALLK G+DVIGV+LQLY + + G +CC+ DV DA RV Sbjct: 6 RIVVAMSGGVDSSVTAALLKEQGHDVIGVSLQLYERPEQTVSGGKTCCSLTDVMDAARVA 65 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + V D ERFR VI F + YAAG TP PC CN +KF LL +T AD+ Sbjct: 66 RRLGIPFQVIDLRERFRELVIDDFITEYAAGRTPNPCARCNERIKFGLLLELTASFDADL 125 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R + DG + + +D +DQ+YFLF QQQL FP+G ++K V Sbjct: 126 LATGHYAR----IEADGTGTYQLLKGLDPRKDQTYFLFGMNQQQLARTIFPVGRLEKHEV 181 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R+LA L +A K +SQ+ICF+ Y ++ + G+IV +G LG H+GI Sbjct: 182 RELAARFNLPVAQKQESQEICFIPDNDYVRFLEE-HGVTPPAGEIVDSSGARLGTHDGIH 240 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YT+GQRRGLG+A EPL+V ++ +++RV+VGPRE L+ + E+ W + + Sbjct: 241 RYTVGQRRGLGIAWKEPLYVTSIETDTARVVVGPREELQRTGLLAEELTWT-----DSPI 295 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 F+ IR Q PVP +DG + V+F+ + GV GQA V Y +D RV+G Sbjct: 296 TGTFRGSCSIRYRQKPVPCSALMREDGRLQVEFDAPQSGVTPGQAVVLYDAD----RVVG 351 Query: 380 GGII 383 GG I Sbjct: 352 GGWI 355 >gi|291545182|emb|CBL18291.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ruminococcus sp. 18P13] Length = 359 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 154/366 (42%), Positives = 211/366 (57%), Gaps = 15/366 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR---KASKRKGSCCAGQDVYDARR 78 +V++ MSGGVDSSV A L+++GYDV GVTL+L+ +A +CCA +DV DAR Sbjct: 3 KVMIGMSGGVDSSVAALRLQQEGYDVTGVTLKLFGDEDIIQAPDATRTCCALRDVEDARS 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + H VF++++ FR+ V+ PF SY GETP PC+DCNR +KF +L LG Sbjct: 63 VAYRLGFEHLVFNFKDAFRSHVMQPFCDSYLRGETPNPCIDCNRHIKFDAMLRRAEALGY 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R D R ++CRP D +DQ+Y L+ TQ QL FPLGD++K Sbjct: 123 DYIATGHYAVRRQ---DPATGRYLLCRPKDRSKDQTYVLYNLTQHQLAHTLFPLGDLEKA 179 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A GL + K DSQDICFV G Y ++ GD + G +GRH G Sbjct: 180 QVRQMAEAAGLVNSHKPDSQDICFVPDGDYAGYIRHATGAEIQPGDFLDTTGNPIGRHRG 239 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 +I+YTIGQR+GLG+++G P +VV D S+ V +G L +RE+NW+ Sbjct: 240 LIHYTIGQRKGLGLSLGRPAYVVGKDAASNTVTIGAESDLYTDSFTVRELNWIS----IP 295 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSNEARV 377 A+ + VK R SQ VP ++ +DG FE + V +GQ+ VFY D+ V Sbjct: 296 ALTAPMQVTVKTRYSQTEVPCRIEPMEDGTCRAVFEAPQRAVTAGQSAVFYDGDT----V 351 Query: 378 LGGGII 383 +GGGII Sbjct: 352 VGGGII 357 >gi|116619734|ref|YP_821890.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Solibacter usitatus Ellin6076] gi|122255775|sp|Q02BG1|MNMA_SOLUE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|116222896|gb|ABJ81605.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Solibacter usitatus Ellin6076] Length = 371 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 154/372 (41%), Positives = 217/372 (58%), Gaps = 18/372 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK------RKGSCCAGQDVYDA 76 + VAMSGGVDSSVVAA+L R+G V+G+T+QL+N R+ + G CC+ DVYDA Sbjct: 6 IAVAMSGGVDSSVVAAMLVREGRTVVGMTMQLWNQRRLPELAVEGATTGRCCSLDDVYDA 65 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV + + + +YV ++EE+F V+ PF Y AG TP+PC CN +KF L + + Sbjct: 66 RRVAEQVGIPYYVVNFEEQFEEHVVKPFVDEYLAGRTPIPCTLCNNYIKFDRFLEMADSV 125 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GA +ATGHY R R D+ R + R +D +DQ+YFLF TQ QL FPLG++ Sbjct: 126 GAYHMATGHYARIR---HDEATGRYQLLRAVDDSKDQTYFLFGLTQAQLARTLFPLGELN 182 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKY--FDVVKRINAGIALE---GDIVHLNGQ 251 K VRD+AR M L +A K DSQ+ICFV G Y F G+A+E G+IV +G+ Sbjct: 183 KPEVRDMARSMDLAVAAKGDSQEICFVPNGDYAAFMSAYLKEKGVAVEETSGEIVTTDGR 242 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 LGRH G+ +T+GQR+GLGVA GEPL+V+ + + +V+VG + L +++NW+ Sbjct: 243 TLGRHEGVHRFTVGQRKGLGVATGEPLYVISTNPANHQVVVGGNDDLLRGGFTAKDVNWI 302 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 E + ++ R + P + + D V V F++++ V GQ VFY D Sbjct: 303 SIAGVEPGAPVRAQVKIRNRHAAAPARLVATSDRDRVEVVFDEAQRAVTPGQGAVFYAGD 362 Query: 372 SNEARVLGGGII 383 VLGGG I Sbjct: 363 ----LVLGGGWI 370 >gi|225873266|ref|YP_002754725.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidobacterium capsulatum ATCC 51196] gi|259495822|sp|C1F792|MNMA_ACIC5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|225792803|gb|ACO32893.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidobacterium capsulatum ATCC 51196] Length = 374 Score = 283 bits (724), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 157/378 (41%), Positives = 217/378 (57%), Gaps = 28/378 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-------KGSCCAGQDVYD 75 V VAMSGGVDSS VAA+L+ +GYD+IG+TLQL+N R+ + + +G CC+ DVYD Sbjct: 7 VAVAMSGGVDSSTVAAMLREEGYDLIGLTLQLWNQRRLAGKDGMPEPVQGRCCSIDDVYD 66 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 ARRV +T+ + +Y+ + +ERF + V+ PF S Y G TP+PC CN +KF LL RQ Sbjct: 67 ARRVAETLGIPYYLVNEQERFESDVVRPFVSEYLHGRTPIPCSLCNNHLKFDQLLLRARQ 126 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 GAD +ATGHY R+ D + R I+ RP D +DQ++FLF TQ+QL FPLG Sbjct: 127 FGADRIATGHYARNEY---DPARGRWILKRPADRSKDQTWFLFGLTQEQLSRTLFPLGGY 183 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI--NAGIALE---GDIVHLNG 250 K VR++A L +A K DSQ+ICF+ G Y + G ++ G++V G Sbjct: 184 TKPEVREIAATHKLALAAKPDSQEICFIPNGDYKRFIDAYLDEQGESIPDSAGELVSTTG 243 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 ++LGRH GI N+T+GQR+GLGV PL+V+ +D S RV VG L R+ NW Sbjct: 244 EVLGRHAGIHNFTVGQRKGLGVTAPNPLYVLQIDPASHRVTVGSDTELATETFRARDCNW 303 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVY---VDFEKSEVGVASGQAC 365 + + + VKIR +P V+ R DG + F++ + V GQ+ Sbjct: 304 ISIA----DLTGERRAQVKIRHRHEPAWATVRPVRGADGTAEAEITFDEPQRAVTPGQSA 359 Query: 366 VFYTSDSNEARVLGGGII 383 VFY D V+GGG I Sbjct: 360 VFYDEDE----VIGGGWI 373 >gi|222055075|ref|YP_002537437.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacter sp. FRC-32] gi|221564364|gb|ACM20336.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacter sp. FRC-32] Length = 370 Score = 281 bits (720), Expect = 9e-74, Method: Compositional matrix adjust. Identities = 161/376 (42%), Positives = 221/376 (58%), Gaps = 18/376 (4%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG----SCCA 69 ++K RVV+AMSGGVDSSV AALL+ G++VIG+++Q+++ K + +G +CC+ Sbjct: 1 MNKEKSKKRVVIAMSGGVDSSVSAALLQEQGFEVIGISMQVWDYGKFAAAEGEKFDTCCS 60 Query: 70 GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 D++DARRV + + + YV ++E+ F + VI F Y G TP PCV CN+ +KF L Sbjct: 61 LDDIHDARRVAEQLGIPFYVVNFEDEFEDLVIKDFVDEYLKGRTPNPCVRCNQWIKFELL 120 Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 L R LGAD +ATGHY R+ + DD R ++ + +D +DQSYFLF TQ+QL Sbjct: 121 LKKARGLGADFIATGHYART---LRDDTGRFHLL-KGVDQTKDQSYFLFTLTQEQLAMTL 176 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 FPLG+M K VR LA L +A+K +SQ+ICFV Y ++ L G+IV + Sbjct: 177 FPLGEMTKTQVRALAARYNLRVAEKGESQEICFVPDNDYVRFIEEERGKELLSGNIVDRS 236 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 G+ILGRH G YTIGQRRGLG+A EPL V+ L+ + V+VGP+++L H + N Sbjct: 237 GKILGRHRGTYRYTIGQRRGLGIAHPEPLHVLELNAETKEVVVGPKDALFSHGLVAANTN 296 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368 W+ DA + C KIR PV V+ V V F + E V GQA VFY Sbjct: 297 WINPA--PDAAIVA-TC--KIRYRHQPVSCTVKPLPCSRVEVRFAEREKSVTPGQAVVFY 351 Query: 369 TSDSNEARVLGGGIIS 384 D+ VLGGG I Sbjct: 352 EGDT----VLGGGWIE 363 >gi|78222093|ref|YP_383840.1| tRNA-specific 2-thiouridylase MnmA [Geobacter metallireducens GS-15] gi|123572471|sp|Q39XA9|MNMA_GEOMG RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|78193348|gb|ABB31115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacter metallireducens GS-15] Length = 368 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 162/370 (43%), Positives = 214/370 (57%), Gaps = 18/370 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG----SCCAGQDVYDAR 77 R+VVAMSGGVDSSV AALLK +G++VIG+++Q+++ K S +G +CC+ D++DAR Sbjct: 8 RIVVAMSGGVDSSVTAALLKEEGHEVIGISMQVWDYSKFSAPEGEKFDTCCSLDDIHDAR 67 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV + I + YV ++EE F+ VI F Y G TP PCV CN+ VKF LL R+LG Sbjct: 68 RVAEQIGIPFYVVNFEEEFQRLVIDDFVDEYFRGRTPNPCVRCNQRVKFELLLRKARELG 127 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD+LATGHY +R+ G DG + R D +DQSYFLF TQ+QL + FPLG M K Sbjct: 128 ADLLATGHY--ARIERGGDGLFH--LLRGDDPGKDQSYFLFTLTQEQLARVTFPLGGMTK 183 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR LA GL +A+K +SQ+ICFV Y ++ L G+IV G +LG H Sbjct: 184 PEVRQLATRFGLRVAEKGESQEICFVPDNDYVRFLEDERGAGQLVGEIVDRAGTVLGHHE 243 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 G YT+GQRRGLG+A PL+VV +D +VIVGP+E L + ++ W+ Sbjct: 244 GTYRYTVGQRRGLGIAHPHPLYVVGVDAERRQVIVGPKEELLAPGLVATDVTWV-----I 298 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + KIR PVP V + V F + E V GQA VFY D Sbjct: 299 ALATETLEAACKIRYRHHPVPCTVTVLAGNRAQVRFREPEKSVTPGQAVVFYHGDE---- 354 Query: 377 VLGGGIISGS 386 VLGGG I + Sbjct: 355 VLGGGWIDAA 364 >gi|320108171|ref|YP_004183761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Terriglobus saanensis SP1PR4] gi|319926692|gb|ADV83767.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Terriglobus saanensis SP1PR4] Length = 389 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 150/381 (39%), Positives = 214/381 (56%), Gaps = 28/381 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK-------ASKRKGSCCAGQDVYD 75 + VAMSGGVDSS VAALL+ G+ ++G+TLQL+N R+ + +G CC+ DVYD Sbjct: 20 IAVAMSGGVDSSAVAALLRSQGHTLVGLTLQLWNQRRLAGHEGMPEQVRGRCCSIDDVYD 79 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 ARRV + + + +YV + +ERF V+ PF + Y AG TP+PC CN +KF LL RQ Sbjct: 80 ARRVAEQLEIPYYVVNQQERFEADVVKPFVAEYLAGRTPIPCTLCNNHLKFDQLLLTARQ 139 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 +GA+ +ATGHY R+ D + R I+ RP D +DQ+YFLF TQ QL FPLG M Sbjct: 140 IGAEKIATGHYARNEF---DVARNRWILKRPTDRSKDQTYFLFGLTQPQLARTLFPLGHM 196 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-----RINAGIALEGDIVHLNG 250 +K +VR +A E L +A K DSQ+ICF+ G Y + + A G++V G Sbjct: 197 EKPAVRAMAEEHDLAVAHKPDSQEICFIPGGDYKAFLAAYLDDQDQAMPDTAGELVDTTG 256 Query: 251 QILGRHNGIINYTIGQRRG----LGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 +G H GI N+T+GQR+G L P +V+ +D + V VG + L V + Sbjct: 257 NTVGHHTGIHNFTVGQRKGVQQNLNAHAASPFYVLGIDATTHNVTVGSDDDLFVRTARID 316 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365 +NW+ E + + KIR +P P + N+DG + + F++ + V GQ+ Sbjct: 317 RLNWISIATLETPL----RVEAKIRHRHEPAPATIAPNEDGTITLTFDEPQRAVTPGQSA 372 Query: 366 VFYTSDSNEARVLGGGIISGS 386 VFY D V+GGG IS + Sbjct: 373 VFYQDDE----VVGGGWISSN 389 >gi|77919454|ref|YP_357269.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pelobacter carbinolicus DSM 2380] gi|123573968|sp|Q3A3F8|MNMA_PELCD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|77545537|gb|ABA89099.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pelobacter carbinolicus DSM 2380] Length = 352 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 157/366 (42%), Positives = 216/366 (59%), Gaps = 17/366 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ ++VAMSGGVDS+V AALL G+ V GVT++++++ G + DAR+ Sbjct: 4 KNKHILVAMSGGVDSTVAAALLLAQGHQVSGVTMRVWDTEPL----GDGREPAHIRDARK 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + +V D E F V+ PF Y +G TP PCV CNR KFS LL +LGA Sbjct: 60 VAFDLGIPLHVVDLREEFLQQVVTPFCEEYLSGRTPNPCVLCNRVFKFSRLLREADRLGA 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY R V DG + ++ + + ++DQSYFLF TQQQL + FPLG+M KE Sbjct: 120 DALATGHYAR---IVEHDGLK--VLAKGSNRQKDQSYFLFTLTQQQLQRVVFPLGEMSKE 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR A +GL +A K DSQDICF+ G Y ++R + EG IVH++G+ LG+H G Sbjct: 175 EVRTHAERLGLHVAQKGDSQDICFIPDGDYIGFLERQSHATDTEGSIVHVSGKRLGKHRG 234 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 +T+GQRRGLG+A EPL+VV +D +VIVG +E L V R+ NW+ + + Sbjct: 235 AYRFTVGQRRGLGIAWPEPLYVVAIDAAKKQVIVGEKEHLHVDRLVTTGTNWI---VAQP 291 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 +C ++ R + P + V ND V V F++ + GV+ GQA VFY D RVL Sbjct: 292 QQPLQARCRIRYRHQEAPCTLVVLGNDR-VEVRFDEPQSGVSPGQAAVFYDED----RVL 346 Query: 379 GGGIIS 384 GGG I+ Sbjct: 347 GGGWIA 352 >gi|302389695|ref|YP_003825516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermosediminibacter oceani DSM 16646] gi|302200323|gb|ADL07893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermosediminibacter oceani DSM 16646] Length = 364 Score = 279 bits (714), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 160/376 (42%), Positives = 221/376 (58%), Gaps = 19/376 (5%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCA 69 + L+KN RVVVAMSGGVDSS A LLK+ GY+VIG+T+Q++ S + R+G CC+ Sbjct: 1 MSLNKN----RVVVAMSGGVDSSTCAYLLKKQGYEVIGITMQIWQDPSEDYTYREGGCCS 56 Query: 70 GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 VYDAR+V + + + +YV +++E F VI F Y G TP PC+ CNR +KF L Sbjct: 57 IGAVYDARKVAEKLGIPYYVLNFKEEFNQKVIEYFIEEYLRGRTPNPCIACNRYIKFEAL 116 Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 L ++ A LATGHY R D R ++ + +D +DQSY L+ TQ QL L Sbjct: 117 LQKAMEVDAYYLATGHYARIEY---DSASGRYLLKKAVDKSKDQSYALYNLTQGQLEHLI 173 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 PLG K +RD+A+E GL +A+K DSQ+ICFV Y + +K +G G IV N Sbjct: 174 MPLGYFTKSQIRDIAKEAGLPVAEKPDSQEICFVND-DYKEFLKEKASGRIKPGPIVDKN 232 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 G+ILG+H GI YTIGQRRGLG++ G+PL+V+ +D+ + V+VG + L +N Sbjct: 233 GRILGQHKGIAFYTIGQRRGLGISAGKPLYVIDIDRKRNAVVVGEEKDLLTKEFTADHVN 292 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W+ D + D + F KIR + D P + + G V V F++ + V GQ+ VFY Sbjct: 293 WIA----FDVLDDKKRVFAKIRYNFDEKPAQIMPLNSGMVKVVFDEPQKSVTPGQSVVFY 348 Query: 369 TSDSNEARVLGGGIIS 384 D VLGGGIIS Sbjct: 349 DGDV----VLGGGIIS 360 >gi|197118358|ref|YP_002138785.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34)-thioltransferase [Geobacter bemidjiensis Bem] gi|197087718|gb|ACH38989.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34)-thioltransferase [Geobacter bemidjiensis Bem] Length = 359 Score = 279 bits (713), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 157/365 (43%), Positives = 214/365 (58%), Gaps = 18/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVC 80 +++VAMSGGVDSSV AALLK G+DV+GV+LQLY +++ G +CC+ DV DA RV Sbjct: 9 QILVAMSGGVDSSVTAALLKEQGHDVMGVSLQLYERPESTPSGGKTCCSLTDVMDAARVA 68 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + V D ERF+ VI F + YAAG TP PC CN +KF LL + GAD+ Sbjct: 69 KRLGIPFEVIDLRERFKELVIDNFTAEYAAGRTPNPCARCNERIKFGLLLDMAASFGADL 128 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R + D + + + +D +DQSYFLF Q+QL + FP+G+++K V Sbjct: 129 LATGHYAR----IEQDAEEIYQLLKGLDPGKDQSYFLFGMNQEQLSRIVFPVGNLEKRVV 184 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGI 259 R+ A L +A K +SQ+ICF+ Y ++ AG+ E GDIV +G LG H GI Sbjct: 185 REHAARFNLPVAQKQESQEICFIPDNDYVRFLE--EAGVRPEAGDIVDKSGNKLGSHVGI 242 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YTIGQRRGLG+A EPL+V +D +SRV+VGP E L++ + E+ W + Sbjct: 243 HKYTIGQRRGLGIAWKEPLYVTAIDGATSRVVVGPEEDLKIGGLVAGELTWT-----DKP 297 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + GF IR PVP + +DG + V+FE + V GQA V Y D +V+ Sbjct: 298 ISGGFNGSCSIRYRMQPVPCSARLIEDGRMQVEFETPQRAVTPGQAVVLYQGD----KVV 353 Query: 379 GGGII 383 GGG I Sbjct: 354 GGGWI 358 >gi|262196730|ref|YP_003267939.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Haliangium ochraceum DSM 14365] gi|262080077|gb|ACY16046.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Haliangium ochraceum DSM 14365] Length = 391 Score = 278 bits (712), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 160/378 (42%), Positives = 223/378 (58%), Gaps = 29/378 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRVCD 81 +V A+SGGVDS+V AA+L G+ V+G+T++LY++ S G CC +D+ DARRVC Sbjct: 7 IVAALSGGVDSAVTAAMLVEQGHRVVGMTMRLYDASGTSASVGGRCCGPRDIEDARRVCA 66 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + YV ++E F + VI F +Y AGETP PCV CN+ +KF+ LL+ R LGA+ + Sbjct: 67 HLGIPFYVVNFEVDFAHTVIDDFVDTYLAGETPNPCVKCNQHIKFTPLLARARALGAETV 126 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + D G R+ R D +DQSYFLF+ +++L +RFPLG M K+ VR Sbjct: 127 ATGHYAR----LEDTGAGIRLR-RGRDASKDQSYFLFSMPREELASVRFPLGAMTKDEVR 181 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVK----RINAGIALEGDIVHLNGQILGRHN 257 D AR GL A K+DSQ+ICFV G Y V+ R + + GDIV GQ+LGRH Sbjct: 182 DKARAYGLPNAAKADSQEICFVPDGDYAGFVEAEALRRSRPVPASGDIVDGEGQVLGRHR 241 Query: 258 GIINYTIGQRRGLG-----VAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G+ +YTIGQRRGLG PL+V+ +D+ RV+VGPRE + +R++ WL Sbjct: 242 GVHHYTIGQRRGLGNLRTQTRSPTPLYVIGVDRARDRVVVGPREQAARRSVPVRDVRWLS 301 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG------VYVDFEKSEVGVASGQACV 366 E + G V++R P+P ++ +G V V F+ + V + GQA V Sbjct: 302 TPPAEGRLSAG----VQVRYRSSPLPATLELCGEGDERGKRVRVHFDDAAVIASPGQAAV 357 Query: 367 FYTSDSNEARVLGGGIIS 384 FY D+ VLGGG I+ Sbjct: 358 FYDGDT----VLGGGWIA 371 >gi|94969297|ref|YP_591345.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Koribacter versatilis Ellin345] gi|189036216|sp|Q1IPC9|MNMA_ACIBL RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|94551347|gb|ABF41271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Koribacter versatilis Ellin345] Length = 370 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 151/381 (39%), Positives = 220/381 (57%), Gaps = 30/381 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-------SCCAGQ 71 K + VAMSGGVDSS VAA+L+ +GY+++G+T+QL+N R+ + +G CC+ Sbjct: 3 KSETIAVAMSGGVDSSTVAAMLRAEGYNLVGLTMQLWNQRRLAHHEGFGEPGVGRCCSLD 62 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 DVYDARRV +T+ + +YV + E+RF V+ PF Y +G TP+PC CN +KF LL Sbjct: 63 DVYDARRVAETLAIPYYVVNQEDRFERDVVKPFVEDYLSGRTPIPCSLCNNHLKFDQLLR 122 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 +Q+GA+ +ATGHY R+ + R + RP D +DQ+YFLF TQ+QL FP Sbjct: 123 TAQQIGAEKIATGHYARNDF---NAQTGRWELKRPADRAKDQTYFLFGLTQEQLSRTLFP 179 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI--NAGIAL---EGDIV 246 LG K VR+ A+ GL + +K DSQ+ICF+ G Y + G +L G++V Sbjct: 180 LGHKTKPEVREDAKNHGLKLFEKPDSQEICFIPNGDYKKFLDAYLEEQGESLPDTSGELV 239 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 +G+++G H GI N+T+GQR+GLGVA G PL+V+ L + +V+VG + L + + Sbjct: 240 TSSGEVVGHHTGIHNFTVGQRKGLGVATGSPLYVIELRGDKRQVVVGNNDELLTRNLRAK 299 Query: 307 EINWLGDGLFEDAVVD---GFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASG 362 +NW+ AV D + KIR +P +++ DD V V F+ + V G Sbjct: 300 RMNWI-------AVSDLAQPMRVHAKIRHKHEPAWATIEKTGDDEVLVTFDDPQRAVTPG 352 Query: 363 QACVFYTSDSNEARVLGGGII 383 QA V Y D V+GGG I Sbjct: 353 QAVVLYDGDV----VVGGGWI 369 >gi|317056376|ref|YP_004104843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ruminococcus albus 7] gi|315448645|gb|ADU22209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ruminococcus albus 7] Length = 360 Score = 276 bits (706), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 153/367 (41%), Positives = 212/367 (57%), Gaps = 13/367 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+ AMSGGVDSS LL GY+V G T+ LYN+ R+ SCC+ DV DAR V Sbjct: 5 KVLAAMSGGVDSSTAVKLLLDAGYEVAGATMHLYNNEDIGIREKSCCSLNDVEDARLVAL 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + +VF++ + F+ V+ F +Y AG TP PC++CN+ +KF L R LG D + Sbjct: 65 KLGIDFHVFNFSDEFKTCVMDNFVDTYLAGGTPNPCIECNKHLKFGRFLDRARMLGFDYI 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+ S DD R ++ R D +DQSY L+ TQ QL FP+G+M K +R Sbjct: 125 ATGHYVTSHY---DDASGRWLLKRSADSSKDQSYVLYGMTQDQLAHTIFPVGEMSKPEIR 181 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A E GL A K DSQDICF+ G Y + AG EGDIV +G +LGRH G+I+ Sbjct: 182 AIAEENGLINAHKRDSQDICFIPDGDYASFITE-RAGEQPEGDIVLSDGTVLGRHKGLIH 240 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQRRG+GV+ EPLFV D S+R+I+G E + R+ ++N++ FE Sbjct: 241 YTIGQRRGVGVSYSEPLFVTAKDMVSNRLIMGTAEQVCSKRLSAHDVNFI---TFEKLTA 297 Query: 322 DGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 +C + R Q VP V ++ V V+F+ V+ GQ+ VFY + V+GG Sbjct: 298 P-LRCTAQTRYHQKDVPCTVFPTGENTVEVEFDTPHKAVSKGQSVVFYDGE----YVIGG 352 Query: 381 GIISGSK 387 G ISG++ Sbjct: 353 GTISGTE 359 >gi|164688541|ref|ZP_02212569.1| hypothetical protein CLOBAR_02186 [Clostridium bartlettii DSM 16795] gi|164602954|gb|EDQ96419.1| hypothetical protein CLOBAR_02186 [Clostridium bartlettii DSM 16795] Length = 362 Score = 275 bits (704), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 223/369 (60%), Gaps = 15/369 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK---RKGSCCAGQDVYDARR 78 +V++ MSGGVDSSV A LLK GYDVIGVT++L+ + + G CC+ + V DAR Sbjct: 4 KVMIGMSGGVDSSVAAYLLKEQGYDVIGVTMKLWQDDEEYELIENDGGCCSLEAVEDARS 63 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V +++ YV +++E F+ VI F Y G TP PC+ CN+ +KF DL RQ+G Sbjct: 64 VAQKLDIPFYVLNFKEVFKEKVIDYFIDEYINGRTPNPCIACNKYIKFEDLYRRARQIGC 123 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R D+ R ++ + + ++DQ+Y L+ TQ QL P+GD +KE Sbjct: 124 DYVATGHYARIE---KDEETGRYLLTKSVTDKKDQTYALYNMTQDQLEHTLLPIGDFEKE 180 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E+GL + +K DSQ+ICFV+ Y + VKR + EG+ V G +LGRH G Sbjct: 181 KVREMAKELGLVVHNKPDSQEICFVKDNDYANYVKRHSNASIKEGNFVDTKGNVLGRHKG 240 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I+NYTIGQR+GLG+A G+P+FV+ ++ ++ VI+G + L H + +++N++ ED Sbjct: 241 IVNYTIGQRKGLGIAFGKPMFVIDINAKNNTVILGDNKDLFQHNLIAKDVNFIS---IED 297 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + + K+R + P V + D + + F++++ + GQ+ V Y D +V Sbjct: 298 -IKEPIRVKAKVRYAAKPADATVYKVGQDKIKIVFDEAQRAITKGQSVVMYDGD----KV 352 Query: 378 LGGGIISGS 386 +GGGII S Sbjct: 353 VGGGIIESS 361 >gi|157273520|gb|ABV27419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Chloracidobacterium thermophilum] Length = 392 Score = 275 bits (703), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 159/396 (40%), Positives = 218/396 (55%), Gaps = 45/396 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK------ASKRKGSCCAGQDVYD 75 R+ VAMSGGVDSS AALLK GYDV+G ++QL+N R+ + CC+ D+YD Sbjct: 4 RIAVAMSGGVDSSTAAALLKEQGYDVVGFSMQLWNQRRINVDAEGNPLPSRCCSLDDLYD 63 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 AR V + + + YV ++EE F V+ PF SY G TP PCV CN +KF L+++ R Sbjct: 64 ARAVAEALGIPFYVLNFEEEFEARVVRPFVVSYLNGNTPSPCVACNSRMKFDTLVALARD 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 +GA +ATGHY R + +D R + + DL +DQSYFLF TQ+QL FPLG++ Sbjct: 124 VGAAKVATGHYARVQF---NDTTGRWELRKGRDLHKDQSYFLFELTQEQLAWALFPLGEL 180 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA------------------ 237 K R LAR GL A+K++SQ+ICF+ G Y ++R A Sbjct: 181 SKAETRALARRYGLPTAEKAESQEICFIPDGNYARFIERYLAEAGGTVAGEPQSPVAPTL 240 Query: 238 -------GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGE--PLFVVYLDKNSS 288 + G+IV +G++LGRHNGI +YT+GQRRGLGV G+ PL+VV +D Sbjct: 241 VQLGLRRNMPQPGEIVTTDGRVLGRHNGIHHYTVGQRRGLGVTAGDGRPLYVVRIDAARG 300 Query: 289 RVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG- 347 +VIVGP E+L + +NW+ L E + +C +IR P + DG Sbjct: 301 QVIVGPEEALTGKTLTATRVNWI--TLPE--LTAPRRCAARIRYRHLEAPATIYPLPDGN 356 Query: 348 VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 V V F+ + + GQA VFY + VLGGG I Sbjct: 357 VRVVFDIPQKAITPGQAVVFYDGEL----VLGGGWI 388 >gi|253700862|ref|YP_003022051.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacter sp. M21] gi|251775712|gb|ACT18293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacter sp. M21] Length = 359 Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 160/373 (42%), Positives = 217/373 (58%), Gaps = 21/373 (5%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDV 73 DK+ K R++VAMSGGVDSSV AALLK G+DVIGV+LQLY +++ G +CC+ DV Sbjct: 3 DKSLKK-RILVAMSGGVDSSVTAALLKEQGHDVIGVSLQLYERPESTPSGGKTCCSLTDV 61 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA RV + + V D ERF+ VI F + YAAG TP PC CN +KF LL +T Sbjct: 62 MDAARVAKRLGIPFEVVDLRERFKELVIDNFTAEYAAGRTPNPCARCNERIKFGLLLEMT 121 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 G D+LATGHY R + D + + + +D +DQSYFLF Q+QL + FP+G Sbjct: 122 ASFGTDLLATGHYAR----IEQDSEGIYQLLKGLDPGKDQSYFLFGMNQEQLSRIVFPVG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQI 252 +++K VR+ A L +A K +SQ+ICF+ Y ++ AG+ E GDIV +G Sbjct: 178 NLEKRVVREHAARFNLPVAQKQESQEICFIPDNDYVRFLE--EAGVKPEAGDIVDGSGNK 235 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 LG H GI YT+GQRRGLG+A EPL+V ++ +SRV+VGP E L+ + E+ W Sbjct: 236 LGSHVGIHKYTVGQRRGLGIAWKEPLYVTAINGATSRVVVGPEEDLKTGGLVAGELTWT- 294 Query: 313 DGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 D + G F IR PVP + ++G + V+FE + V GQA V Y Sbjct: 295 -----DKPISGTFNGSCSIRYRMKPVPCSARLIEEGSIQVEFETPQRAVTPGQAVVLYQG 349 Query: 371 DSNEARVLGGGII 383 D +V+GGG I Sbjct: 350 D----KVVGGGWI 358 >gi|283781959|ref|YP_003372714.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Pirellula staleyi DSM 6068] gi|283440412|gb|ADB18854.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Pirellula staleyi DSM 6068] Length = 373 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 159/381 (41%), Positives = 213/381 (55%), Gaps = 28/381 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTL-----------------QLYNSRKASKRK 64 R+V+AMSGGVDSSV AA+L R G++VIGV + QL ++ S K Sbjct: 3 RIVLAMSGGVDSSVAAAILTRAGHEVIGVFMRHGEEAQAACAVDAPGFQLPIFKERSDHK 62 Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 CC+ D DARRV D +++ Y + + FR +I F Y G TP PCV CN + Sbjct: 63 QGCCSASDAEDARRVADRLDIPFYALNLQSEFRQ-IIDYFIDEYTVGRTPNPCVQCNNWL 121 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 KF L +GA+ +ATGHY R GD +CR +D +DQSY LF ++ Sbjct: 122 KFGKLFDYADSVGAEFVATGHYARLAQIDGD-----LALCRGVDDGKDQSYVLFGIKKEL 176 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 L + P+GD K +R LA E+GL +ADK DSQ+ICFV GK+ + V+ I G+ Sbjct: 177 LPRMLLPIGDYYKPQIRKLAHEIGLRVADKRDSQEICFVTSGKHDEFVRARRPDIDTRGE 236 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 IV + G++LG+H GI +TIGQRRGLGVA+GE FVV ++ ++ RV+VG R+ L + Sbjct: 237 IVTMEGKVLGQHAGIERFTIGQRRGLGVALGERAFVVRIEPDTHRVVVGTRDDLARTALT 296 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363 NW A+ + F+C KIR + DP P R DD + VDF++ GVA GQ Sbjct: 297 AANCNWHTTKSPVGAIGEPFRCEAKIRYNSDPAPATAVRLTDDRLQVDFDEPRHGVAPGQ 356 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 A V Y D RVLGGG I Sbjct: 357 AVVVYDGD----RVLGGGWIE 373 >gi|126698878|ref|YP_001087775.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile 630] gi|123174593|sp|Q18BE2|MNMA_CLOD6 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|115250315|emb|CAJ68137.1| transfer RNA-specific 2-thiouridylase MnmA [Clostridium difficile] Length = 361 Score = 273 bits (697), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 140/366 (38%), Positives = 220/366 (60%), Gaps = 12/366 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++ MSGGVDSSV A LLK+ GYDVIGVT++L+ + +G CC+ V DARRV + Sbjct: 6 KVMIGMSGGVDSSVAAYLLKQQGYDVIGVTMKLWQDDDVVEIEGGCCSLSAVEDARRVAN 65 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + YV ++ E F+ VI F Y G+TP PC+ CN+ +KF D RQ+G D + Sbjct: 66 KIGIPFYVLNFREVFKEKVIDYFIDEYLEGKTPNPCIACNKHIKFDDFYKKARQIGCDYV 125 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + D+ R ++ + + ++DQ+Y L+ TQ+QL P+GD +K+ VR Sbjct: 126 ATGHYAKIE---KDESTGRYLLKKSVTDKKDQTYALYNLTQEQLEHTLLPIGDYEKDRVR 182 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A+EMG+ + +K DSQ+ICFV+ Y + VK+ + EG V G ILG+H GI+ Sbjct: 183 EIAKEMGMAVHNKPDSQEICFVKDNDYANYVKKHSKKRIEEGFFVDTKGNILGKHKGILY 242 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQR+GLG+ G+P+FV+ ++ ++ +++G E L + +++N++ E+ + Sbjct: 243 YTIGQRKGLGITFGKPMFVIDINPINNTIVLGDNEDLFKKELIAKDVNFISIDTLEEPL- 301 Query: 322 DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 + KIR S P P + R +D + + F++++ + GQ+ V Y D V+GG Sbjct: 302 ---RVQAKIRYSAKPSPATIHRVGEDTIKIVFDEAQRAITKGQSVVMYDGDI----VVGG 354 Query: 381 GIISGS 386 GII S Sbjct: 355 GIIEKS 360 >gi|295695739|ref|YP_003588977.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Bacillus tusciae DSM 2912] gi|295411341|gb|ADG05833.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Bacillus tusciae DSM 2912] Length = 363 Score = 272 bits (696), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 154/366 (42%), Positives = 216/366 (59%), Gaps = 14/366 (3%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVVAMSGGVDSSV AALLK GYDVIG+T++L + S +G CC+ DV DARRVC + Sbjct: 6 VVVAMSGGVDSSVTAALLKERGYDVIGITMRLRGGEETSSGRG-CCSVDDVSDARRVCQS 64 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + Y +Y E F VI F Y G TP PC+ CN +K+ LL LGAD LA Sbjct: 65 LGIPFYAVNYREAFEKRVIQYFEDEYKRGRTPNPCIACNMYMKYDLLLEQAVDLGADYLA 124 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R LY D+ + R ++ + D +DQ+Y L+ TQ+QL FPLG+ +K VR+ Sbjct: 125 TGHYARV-LY--DESRGRYVLRKAEDRRKDQTYVLYHLTQEQLARTLFPLGEYEKSEVRE 181 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNGIIN 261 +AR+ GL +A+K++SQDICF+ G Y + ++R A+ GD V G ++GRH G+ Sbjct: 182 MARKFGLRVANKAESQDICFIPNGDYGEFLRRRMGDSAVAPGDFVDTEGHVVGRHEGVSF 241 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQR+GLGVA+G P++VV + +RV++GP+E + + ++NWL + Sbjct: 242 YTIGQRKGLGVAVGHPVYVVDIQPERNRVVLGPKERVFSPGLVASKVNWLSLPRPNGPI- 300 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 + KIR + + G V V+F++ + V GQA VFY + V+GG Sbjct: 301 ---RVSAKIRYGAPEAAATLYPEEAGRVRVEFDEPQRAVTPGQAVVFYRGEE----VVGG 353 Query: 381 GIISGS 386 G I S Sbjct: 354 GTIEKS 359 >gi|254974826|ref|ZP_05271298.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile QCD-66c26] gi|255092214|ref|ZP_05321692.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile CIP 107932] gi|255100299|ref|ZP_05329276.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile QCD-63q42] gi|255306238|ref|ZP_05350410.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile ATCC 43255] gi|255313953|ref|ZP_05355536.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile QCD-76w55] gi|255516633|ref|ZP_05384309.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile QCD-97b34] gi|255649732|ref|ZP_05396634.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile QCD-37x79] gi|260682888|ref|YP_003214173.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile CD196] gi|260686486|ref|YP_003217619.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile R20291] gi|260209051|emb|CBA62172.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile CD196] gi|260212502|emb|CBE03431.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile R20291] Length = 359 Score = 272 bits (696), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 140/366 (38%), Positives = 220/366 (60%), Gaps = 12/366 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++ MSGGVDSSV A LLK+ GYDVIGVT++L+ + +G CC+ V DARRV + Sbjct: 4 KVMIGMSGGVDSSVAAYLLKQQGYDVIGVTMKLWQDDDVVEIEGGCCSLSAVEDARRVAN 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + YV ++ E F+ VI F Y G+TP PC+ CN+ +KF D RQ+G D + Sbjct: 64 KIGIPFYVLNFREVFKEKVIDYFIDEYLEGKTPNPCIACNKHIKFDDFYKKARQIGCDYV 123 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + D+ R ++ + + ++DQ+Y L+ TQ+QL P+GD +K+ VR Sbjct: 124 ATGHYAKIE---KDESTGRYLLKKSVTDKKDQTYALYNLTQEQLEHTLLPIGDYEKDRVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A+EMG+ + +K DSQ+ICFV+ Y + VK+ + EG V G ILG+H GI+ Sbjct: 181 EIAKEMGMAVHNKPDSQEICFVKDNDYANYVKKHSKKRIEEGFFVDTKGNILGKHKGILY 240 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQR+GLG+ G+P+FV+ ++ ++ +++G E L + +++N++ E+ + Sbjct: 241 YTIGQRKGLGITFGKPMFVIDINPINNTIVLGDNEDLFKKELIAKDVNFISIDTLEEPL- 299 Query: 322 DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 + KIR S P P + R +D + + F++++ + GQ+ V Y D V+GG Sbjct: 300 ---RVQAKIRYSAKPSPATIHRVGEDTIKIVFDEAQRAITKGQSVVMYDGDI----VVGG 352 Query: 381 GIISGS 386 GII S Sbjct: 353 GIIEKS 358 >gi|296451277|ref|ZP_06893017.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile NAP08] gi|296880371|ref|ZP_06904334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile NAP07] gi|296259883|gb|EFH06738.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile NAP08] gi|296428612|gb|EFH14496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile NAP07] Length = 361 Score = 272 bits (695), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 140/366 (38%), Positives = 220/366 (60%), Gaps = 12/366 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++ MSGGVDSSV A LLK+ GYDVIGVT++L+ + +G CC+ V DARRV + Sbjct: 6 KVMIGMSGGVDSSVAAYLLKQQGYDVIGVTMKLWQDDDDVEIEGGCCSLSAVEDARRVAN 65 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + YV ++ E F+ VI F Y G+TP PC+ CN+ +KF D RQ+G D + Sbjct: 66 KIGIPFYVLNFREVFKEKVIDYFIDEYLEGKTPNPCIACNKHIKFDDFYKKARQIGCDYV 125 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + D+ R ++ + + ++DQ+Y L+ TQ+QL P+GD +K+ VR Sbjct: 126 ATGHYAKIE---KDESTGRYLLKKSVTDKKDQTYALYNLTQEQLEHTLLPIGDYEKDRVR 182 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A+EMG+ + +K DSQ+ICFV+ Y + VK+ + EG V G ILG+H GI+ Sbjct: 183 EIAKEMGMAVHNKPDSQEICFVKDNDYANYVKKHSKKRIEEGFFVDTKGNILGKHKGILY 242 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQR+GLG+ G+P+FV+ ++ ++ +++G E+L + +++N++ E+ + Sbjct: 243 YTIGQRKGLGITFGKPMFVIDINPINNTIVLGDNENLFKKELIAKDVNFISIDTLEEPL- 301 Query: 322 DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 + KIR S P P + R D + + F++++ + GQ+ V Y D V+GG Sbjct: 302 ---RVQAKIRYSAKPSPATIHRVGKDTIKIVFDEAQRAITKGQSVVMYDEDI----VVGG 354 Query: 381 GIISGS 386 GII S Sbjct: 355 GIIEKS 360 >gi|255655293|ref|ZP_05400702.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile QCD-23m63] Length = 359 Score = 271 bits (694), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 140/366 (38%), Positives = 220/366 (60%), Gaps = 12/366 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++ MSGGVDSSV A LLK+ GYDVIGVT++L+ + +G CC+ V DARRV + Sbjct: 4 KVMIGMSGGVDSSVAAYLLKQQGYDVIGVTMKLWQDDDDVEIEGGCCSLSAVEDARRVAN 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + YV ++ E F+ VI F Y G+TP PC+ CN+ +KF D RQ+G D + Sbjct: 64 KIGIPFYVLNFREVFKEKVIDYFIDEYLEGKTPNPCIACNKHIKFDDFYKKARQIGCDYV 123 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + D+ R ++ + + ++DQ+Y L+ TQ+QL P+GD +K+ VR Sbjct: 124 ATGHYAKIE---KDESTGRYLLKKSVTDKKDQTYALYNLTQEQLEHTLLPIGDYEKDRVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A+EMG+ + +K DSQ+ICFV+ Y + VK+ + EG V G ILG+H GI+ Sbjct: 181 EIAKEMGMAVHNKPDSQEICFVKDNDYANYVKKHSKKRIEEGFFVDTKGNILGKHKGILY 240 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQR+GLG+ G+P+FV+ ++ ++ +++G E+L + +++N++ E+ + Sbjct: 241 YTIGQRKGLGITFGKPMFVIDINPINNTIVLGDNENLFKKELIAKDVNFISIDTLEEPL- 299 Query: 322 DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 + KIR S P P + R D + + F++++ + GQ+ V Y D V+GG Sbjct: 300 ---RVQAKIRYSAKPSPATIHRVGKDTIKIVFDEAQRAITKGQSVVMYDEDI----VVGG 352 Query: 381 GIISGS 386 GII S Sbjct: 353 GIIEKS 358 >gi|153813145|ref|ZP_01965813.1| hypothetical protein RUMOBE_03554 [Ruminococcus obeum ATCC 29174] gi|149830800|gb|EDM85890.1| hypothetical protein RUMOBE_03554 [Ruminococcus obeum ATCC 29174] Length = 375 Score = 268 bits (686), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 152/364 (41%), Positives = 210/364 (57%), Gaps = 13/364 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRVC 80 + ++AMSGGVDSSV A L+ ++GYD G TL+LY++ + S +CC D DAR V Sbjct: 14 KAIIAMSGGVDSSVAAYLMVKEGYDCAGATLKLYDNPQCSFPGHRACCTPSDTEDARSVA 73 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + +YVF + FR++VI FA +Y G TP PC+DCNR +KFS LL R+LG + Sbjct: 74 ARLGMLYYVFPMHDEFRHSVIDKFADTYLHGGTPNPCIDCNRFLKFSALLDKARELGCEY 133 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A+GHY R D R I+ + +D +DQSY L+A TQ QL FPLG K+ + Sbjct: 134 IASGHYARREQ---DPETGRFILKKGLDPTKDQSYVLYAMTQDQLAHTLFPLGSYTKKEI 190 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A++ G ADK DSQDICFV G Y +++ + GD V G +LG+H G I Sbjct: 191 RHIAQKQGFINADKPDSQDICFVPDGDYASFIEQYTGQSSEPGDFVDKEGNVLGKHKGQI 250 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +YTIGQRRGLG++ E L+V +S++VI+G ++ L Y+ +IN + D + Sbjct: 251 HYTIGQRRGLGISAPESLYVCGKSLDSNKVILGGKQDLMSTCCYINDINLIP----WDHL 306 Query: 321 VDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 KC VK R Q P V Q DD + + FE+ + V GQA V Y D VLG Sbjct: 307 DKPIKCKVKTRYRQPEQPATVEQLGDDLLKITFEEPQRAVTPGQAAVLYDGD----MVLG 362 Query: 380 GGII 383 GG I Sbjct: 363 GGTI 366 >gi|153814505|ref|ZP_01967173.1| hypothetical protein RUMTOR_00719 [Ruminococcus torques ATCC 27756] gi|317500546|ref|ZP_07958768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089354|ref|ZP_08338254.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium 3_1_46FAA] gi|145847999|gb|EDK24917.1| hypothetical protein RUMTOR_00719 [Ruminococcus torques ATCC 27756] gi|316898056|gb|EFV20105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|330405417|gb|EGG84952.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium 3_1_46FAA] Length = 356 Score = 268 bits (686), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 152/365 (41%), Positives = 212/365 (58%), Gaps = 15/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + G CC V DARRV Sbjct: 3 KVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEEDVCTVEENGGCCGLSAVEDARRV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + +YV ++ E F+ VI FA SY G+TP PC+ CNR VK+ LL + +GAD Sbjct: 63 AAALGIPYYVMNFREEFQKNVIDYFADSYVNGQTPNPCIACNRYVKWEALLKRSISIGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R V R + R +DQ+Y L+ TQ+QL P+G+ KE Sbjct: 123 FIATGHYAR----VEQLSNGRYALRRSATAAKDQTYALYNLTQEQLKRTLMPVGEYTKEE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++GL +ADK DSQDICFVQ G Y ++ A EG+ V +G ++GRH GI Sbjct: 179 VRVIAEKIGLLVADKPDSQDICFVQDGNYAAFIEEHTGKKASEGNFVTSDGTVIGRHKGI 238 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 I+YT+GQR+GLG+A+G P FV+ + ++ V++G E + +++N++ ED Sbjct: 239 IHYTVGQRKGLGLALGYPAFVLEIRPETNEVVIGTYEESLTTVVRAKQLNFMS---VED- 294 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + + F KIR + V+R +D V FE+ + V GQA VFY + VL Sbjct: 295 LKEPLRVFAKIRYNHKGAWCTVERTKEDEVTCCFEEPQRAVTPGQAIVFYDGE----YVL 350 Query: 379 GGGII 383 GGG I Sbjct: 351 GGGTI 355 >gi|268608557|ref|ZP_06142284.1| tRNA-specific 2-thiouridylase MnmA [Ruminococcus flavefaciens FD-1] Length = 358 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 147/366 (40%), Positives = 212/366 (57%), Gaps = 15/366 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR---KASKRKGSCCAGQDVYDARR 78 +V+V MSGGVDSSV A LL+ GYDV+GVTL+L++ +A K +CCA DV DAR Sbjct: 3 KVMVGMSGGVDSSVAAMLLREQGYDVMGVTLKLFSDEDIDQAQKEGKTCCALSDVEDARS 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + H VF++++ FR V+ F+ SY G TP PC++CNR VKF +L +L Sbjct: 63 VARRLGFEHLVFNFKDNFREHVMKQFSDSYLCGRTPNPCIECNRHVKFDKMLRRALELEY 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY D+ + R ++ R D +DQ+Y L++ TQ+QL FPLG + K Sbjct: 123 DYIATGHYAVCEY---DEERGRWLLKRSADRSKDQTYVLYSLTQEQLSHTLFPLGSLDKT 179 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR+LA + GL ++K DSQDICFV G Y ++R G+ V + G++LG H G Sbjct: 180 QVRELAEKAGLVNSNKPDSQDICFVPDGDYAGFIRRFTGTDVPHGNFVDMEGKVLGEHKG 239 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 IINYT+GQR+GLG+++G+P +VV D +++ V +G L + + N + Sbjct: 240 IINYTVGQRKGLGISLGKPAYVVKKDVDTNTVTLGDESDLYTKTLIADDFNLISVA---- 295 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARV 377 + + + K R SQ+ P V +G Y V+F++ + V SGQA V Y D V Sbjct: 296 ELTEPMRVTAKTRYSQNEQPATVSYLGNGEYMVEFDQPQRAVTSGQAVVLYDGDI----V 351 Query: 378 LGGGII 383 +GGG I Sbjct: 352 VGGGTI 357 >gi|121535962|ref|ZP_01667756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermosinus carboxydivorans Nor1] gi|121305454|gb|EAX46402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermosinus carboxydivorans Nor1] Length = 364 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 151/370 (40%), Positives = 212/370 (57%), Gaps = 14/370 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQDVYDARRV 79 RVVVAMSGGVDSS+ AALL GYDVIGVT+Q++ + + CC+ V DARRV Sbjct: 6 RVVVAMSGGVDSSLTAALLVHQGYDVIGVTMQIWENDLPEIDPEHRGCCSLSAVNDARRV 65 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + +YV ++ E F+ V+ F YAAG+TP PC+ CNR VKF LL L A Sbjct: 66 ADKLGIPYYVLNFREMFQETVVDYFIREYAAGKTPNPCIACNRYVKFEGLLQKALALDAQ 125 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R D G+ R I+ + +D +DQSY L+ Q L PLG+ K Sbjct: 126 YVATGHYARIEY---DKGRGRYILRKGVDRTKDQSYALYHLNQHTLRHFLMPLGEYTKVQ 182 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R +AR+ GL +A+K DSQ+ICF+ Y ++ G+IV +G+ILGRH G+ Sbjct: 183 TRQMARQFGLAVAEKPDSQEICFIPNDDYKSFLEEKAPETLRPGNIVDTHGRILGRHKGL 242 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YT+GQR+GLG+A+G+PL+VV LD + VIVG E + + ++N++ D Sbjct: 243 PLYTVGQRKGLGIAVGKPLYVVALDYERNEVIVGSDEDVFASELIAEDLNFIT----VDK 298 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + KIR S P + +G VYV F++ + + GQ+ VFY D+ V+ Sbjct: 299 LASPLRVAAKIRYSAREAPATITPEREGAVYVRFDEPQRAITPGQSVVFYDGDT----VV 354 Query: 379 GGGIISGSKR 388 GGGII + R Sbjct: 355 GGGIIRKAIR 364 >gi|16330399|ref|NP_441127.1| tRNA-specific 2-thiouridylase MnmA [Synechocystis sp. PCC 6803] gi|3122978|sp|P73755|MNMA_SYNY3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|1652889|dbj|BAA17807.1| sll0844 [Synechocystis sp. PCC 6803] Length = 358 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 157/373 (42%), Positives = 216/373 (57%), Gaps = 23/373 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV AALL R GY V+GVTL L K KG CC+ + + DA +C+ Sbjct: 4 KVVVGLSGGVDSSVAAALLHRQGYAVVGVTLWLM------KGKGQCCS-EGLVDAASICE 56 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + V H + D + F+N +I Y G TPLPC CN+ VKF +L +Q LG D Sbjct: 57 QLGVPHEIVDTRDLFQNHIIDYLVQGYGEGVTPLPCSQCNKAVKFGPMLQYAQQSLGIDK 116 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R ++ +R + R +D ++DQSYFL+ +Q+ L FPLG+ K Sbjct: 117 IATGHYARIRF---NEASQRYELLRAVDRQKDQSYFLYDLSQEILAATLFPLGEQTKTVT 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R LA E L A+K DSQD+C ++ G D + + A A G+IV L+G +LG H GI Sbjct: 174 RQLAAEFDLSTAEKKDSQDLCLIEAHGSMRDFLDKYIAPKA--GEIVDLSGAVLGHHEGI 231 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQR+GLG+A EPL+VV LD +RVIVG R+S Y++ +NW+ + E Sbjct: 232 HHYTIGQRKGLGIAAAEPLYVVKLDPVMNRVIVGDRQSAGSGECYVQRLNWV--SIPEPT 289 Query: 320 VVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 +C V++R PV V + +D + + F++ + G+ GQA V Y D RVL Sbjct: 290 A--PIRCEVQVRYRSAPVTVNAIPWHDQQIKLVFDEPQFGITPGQAAVLYDGD----RVL 343 Query: 379 GGGIISGSKRSDA 391 GGGII K A Sbjct: 344 GGGIICPQKSETA 356 >gi|255020959|ref|ZP_05293015.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidithiobacillus caldus ATCC 51756] gi|254969750|gb|EET27256.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidithiobacillus caldus ATCC 51756] Length = 348 Score = 268 bits (684), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 155/364 (42%), Positives = 212/364 (58%), Gaps = 21/364 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+VVA+SGGVDS+V AALL G+D++GVTL+L+ + CC +D+ DA +C Sbjct: 3 RIVVALSGGVDSAVAAALLADAGHDLVGVTLRLWPQSR-------CCDERDIEDAADLCA 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + V DY +RFR A++ PF + Y AG TP PC CN+ +KF+ L + LGAD L Sbjct: 56 QLGIPYRVLDYRQRFREAIVEPFVADYLAGRTPNPCARCNQLLKFTALWQESAALGADFL 115 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R R VGDD + RR + D +DQSYFLFA + L LRFPLG+ +KE VR Sbjct: 116 ATGHYVRLR-EVGDDWQLRRAV----DERKDQSYFLFAVPGELLPRLRFPLGEWRKEEVR 170 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 AR+ GL IA K DSQD+CF+ G +K GDIV G +LG+H G+++ Sbjct: 171 TWARQRGLAIAAKGDSQDLCFIPDGDTGAFIKSQTQVEVRPGDIVDATGAVLGQHEGLVH 230 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YT+GQRRGLG P +V+ LD +R+ VGP +L LR+ NW L +V Sbjct: 231 YTVGQRRGLGGGAAVPRYVLALDAKHNRLQVGPEAALFRGEARLRDCNW----LTTQSVA 286 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 VK+R + PVP ++ D ++ F + + GQA V Y D R+LGG Sbjct: 287 LDTPVTVKLRYAASPVPATLRLLDGAAAHLRFATPQRAITPGQAAVCYDGD----RLLGG 342 Query: 381 GIIS 384 G I+ Sbjct: 343 GWIA 346 >gi|326791915|ref|YP_004309736.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium lentocellum DSM 5427] gi|326542679|gb|ADZ84538.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium lentocellum DSM 5427] Length = 360 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 140/363 (38%), Positives = 211/363 (58%), Gaps = 12/363 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV MSGGVDSSV A LLK GY+VIG+T+Q++ G CC V DARRVC Sbjct: 8 KVVVGMSGGVDSSVTAYLLKEQGYEVIGMTMQIWQEGAPEDSDGGCCGLSAVDDARRVCQ 67 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ HYV ++ F+ VI F Y TP PC+ CNR VK+ +L Q+GAD + Sbjct: 68 KLDIPHYVVNFRSDFKKHVIDYFLDEYQNARTPNPCIACNRYVKWESMLQKALQIGADYI 127 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + D+ R + + L +DQ+Y L+ TQ QL PLGD K+ VR Sbjct: 128 ATGHYAR---VIRDEVTGRYSLKQSKTLAKDQTYALYNLTQHQLAHTLMPLGDYTKDEVR 184 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A+E+GL +A K DSQ+ICFV Y ++ + G+ V+ +G++LG+H GII+ Sbjct: 185 AIAKEIGLAVATKPDSQEICFVPDNNYAKYIEEETGKKPVVGNFVNKDGKVLGKHKGIIH 244 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQR+GLG+++G+P FV +++ ++ V++G E L + ++N++ E + Sbjct: 245 YTIGQRKGLGLSLGKPGFVQRINQKTNEVVIGDNEDLFDTTVTANQVNFMPFEHLEGEM- 303 Query: 322 DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 C KIR +Q P P ++ ++D + F++ + + GQA V Y D +++GG Sbjct: 304 ---HCLGKIRYNQAPQPCTIKMIDEDTIQCIFDEKQRAITPGQALVLYDGD----KLIGG 356 Query: 381 GII 383 G I Sbjct: 357 GTI 359 >gi|325679422|ref|ZP_08159007.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ruminococcus albus 8] gi|324109019|gb|EGC03250.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ruminococcus albus 8] Length = 356 Score = 267 bits (683), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 148/363 (40%), Positives = 208/363 (57%), Gaps = 13/363 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+ AMSGGVDSS LL GY+V G T+ LYN+ R+ +CC+ DV DAR V Sbjct: 5 RVLAAMSGGVDSSAAVKLLLDKGYEVAGATMHLYNNEDIGIREKNCCSLNDVEDARLVAL 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + +VF++ + F+ V+ F ++Y +G TP PC++CN+ +KF L LG D + Sbjct: 65 KLGIDFHVFNFSDEFKMRVMDDFVNTYLSGGTPNPCIECNKHLKFGRFLERAELLGFDYI 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+ S D+ R ++ R D +DQSY L+ TQ QL FP+GDM K +R Sbjct: 125 ATGHYVTSHY---DEASGRWLLKRSADRAKDQSYVLYGMTQHQLAHTIFPVGDMNKTDIR 181 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DSQDICF+ G Y + AG GDIV +G +LG+H G+I+ Sbjct: 182 ALAEENGLINAHKRDSQDICFIPDGDYAKFITEA-AGEQPAGDIVLSDGTVLGKHRGLIH 240 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YT+GQRRG+GV+ EPLFV D +++I+G E L + E+N++ D + Sbjct: 241 YTVGQRRGVGVSYSEPLFVTSKDMAQNKLIMGTAEQLCSKTLTAGEVNFIT----VDKLT 296 Query: 322 DGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 KC + R Q VP V Q +++ V V+F+K ++ GQA VFY + V+GG Sbjct: 297 SPLKCTAQTRYHQQDVPCTVFQIDENTVKVEFDKPHKAISKGQAVVFYDGE----YVVGG 352 Query: 381 GII 383 G I Sbjct: 353 GKI 355 >gi|295110441|emb|CBL24394.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ruminococcus obeum A2-162] Length = 373 Score = 267 bits (682), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 150/364 (41%), Positives = 212/364 (58%), Gaps = 13/364 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRVC 80 + ++AMSGGVDSSV A L+ ++GYD G TL+LY++ + S +CC D DAR V Sbjct: 4 KAMIAMSGGVDSSVAAYLMVQNGYDCAGATLKLYDNPQCSFPGHRACCTPSDTEDARSVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + +YVF + FR++VI FA +Y G TP PC+DCNR +KFS LL R+LG + Sbjct: 64 ARLGMLYYVFPMHDEFRHSVIDKFADTYLHGGTPNPCIDCNRFLKFSALLDKARELGCEY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A+GHY R D R I+ + +D +DQSY L+A TQ QL FPLG K+ + Sbjct: 124 IASGHYARREQ---DPETGRFILKKGLDPTKDQSYVLYAMTQDQLAHTLFPLGGYTKKEI 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A+E G ADK DSQDICFV G Y +++ + GD V G++LG+H G I Sbjct: 181 RHIAQEQGFINADKPDSQDICFVPDGDYASFIEQYTGQSSEPGDFVDKEGKVLGKHKGQI 240 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +YTIGQRRGLG++ E L+V +S+ VI+G ++ L + Y+ +IN + D + Sbjct: 241 HYTIGQRRGLGISAPESLYVCGKSLDSNEVILGGKQDLMSNYCYINDINLIP----WDHL 296 Query: 321 VDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 KC VK R Q P V++ +D + + F++ + V GQA V Y D VLG Sbjct: 297 DAPIKCKVKTRYRQPEQPATVEQIGEDLIKITFDEPQRAVTPGQAAVLYDDD----MVLG 352 Query: 380 GGII 383 GG I Sbjct: 353 GGTI 356 >gi|227824500|ref|ZP_03989332.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226904999|gb|EEH90917.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 357 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 146/367 (39%), Positives = 211/367 (57%), Gaps = 15/367 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+ ++AMSGGVDSSV A L+ GY+ +G T++LYN+ A +CC+ +DV DAR V Sbjct: 1 MKALIAMSGGVDSSVAAKLMLDQGYECVGCTMKLYNNPDAGCSSKTCCSIRDVEDARSVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + ++VF+Y + FR V+ FA SY G+TP PC+DCN+ +KF L ++LG D Sbjct: 61 VRLGMPYFVFNYMDEFRRDVMETFARSYTLGKTPNPCIDCNKFLKFGALYERAKELGCDT 120 Query: 141 LATGHYIRSRLYVGDDGKRRRI--MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + TGHY R R KR + R D ++DQSY L+ TQ+QL +FPLGD +K Sbjct: 121 IVTGHYARIR-------KRNGCYELLRAKDPKKDQSYVLYNLTQEQLAHTQFPLGDYEKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R++A E G + K DSQDICFV G Y + V+RI + G + L+G+ +G H G Sbjct: 174 HTREIAEESGFINSHKPDSQDICFVPNGTYTEAVQRILSYEPQPGPFLTLDGKEIGTHKG 233 Query: 259 IINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 II YTIGQ + LG+ + PL+V+ +D + VIVGP ++L ++E NW+ G Sbjct: 234 IIYYTIGQHKKLGLPQPDGPLYVIAIDPKKNAVIVGPSQALFRRDAAVKEANWI-SGKVP 292 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 DA F C VK+R Q+ P V D + F++ + + GQ+ V Y Sbjct: 293 DAP---FACLVKVRYRQEAQPAIVTPTGSDTFSILFDEPQRAITPGQSAVLYGLGDETDV 349 Query: 377 VLGGGII 383 V+GGGI+ Sbjct: 350 VIGGGIL 356 >gi|312143962|ref|YP_003995408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Halanaerobium sp. 'sapolanicus'] gi|311904613|gb|ADQ15054.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Halanaerobium sp. 'sapolanicus'] Length = 357 Score = 266 bits (680), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 148/371 (39%), Positives = 217/371 (58%), Gaps = 23/371 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80 +V++AMSGGVDSSV AALLK GY+VIG T+ ++ + +A+ R+ CC+ + DA+RV Sbjct: 3 KVMIAMSGGVDSSVAAALLKEKGYEVIGGTMHIFPDYEEATDREDHCCSYSAIRDAKRVA 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + H+VF+ ++ F+ VI F Y+ TP PCV CN+ +KF LL R++G D Sbjct: 63 QKLEIPHFVFNLKDEFQEKVIDYFVYEYSKARTPNPCVMCNKKIKFDALLRKAREIGCDY 122 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + G R ++ + D +DQSY L+ Q+QL FPLGD K+ + Sbjct: 123 IATGHYSKIEKNNG-----RYLLKKGRDESKDQSYMLYVLNQEQLSRALFPLGDFTKQEI 177 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R A+E+G +I +K++SQ+ICFV Y + I+ G I+ G +G HNGI Sbjct: 178 RQKAKELGFEIHNKAESQEICFVPDDDYVRFLDNNYPEISKPGPILDSEGNKVGTHNGIS 237 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG----DGLF 316 NYTIGQRRGLGVA+G P +VV LD +++ VI+G E + ++ +IN + DG Sbjct: 238 NYTIGQRRGLGVALGYPAYVVKLDPDNNAVILGEDEEVFSKGLFAEDINIIPFSSLDGKI 297 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 E A +IR + PVP +++ +D + V+F+ S+ V GQ+ VFY D Sbjct: 298 EVA--------AQIRYNSYPVPAIIEKIGEDKIKVEFKDSQRAVTPGQSVVFYLDD---- 345 Query: 376 RVLGGGIISGS 386 V GGGII S Sbjct: 346 LVFGGGIIKES 356 >gi|160881034|ref|YP_001560002.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium phytofermentans ISDg] gi|205813731|sp|A9KPI9|MNMA_CLOPH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|160429700|gb|ABX43263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium phytofermentans ISDg] Length = 357 Score = 266 bits (680), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 144/365 (39%), Positives = 215/365 (58%), Gaps = 15/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + + G CC V DARRV Sbjct: 3 KVVVGMSGGVDSSVAAYLLKEAGYDVIGVTMQIWQDEDNQTVEENGGCCGLSAVDDARRV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +++++ +YV +++ F+ V+ F Y AG TP PC+ CNR VK+ LL+ + Q+GAD Sbjct: 63 ANSLDIPYYVMNFKSEFKANVMDYFVKEYQAGRTPNPCIACNRYVKWESLLTRSLQIGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY +R+ +G R + + +DQ+Y L+ TQ QL P+G+ KE Sbjct: 123 YIATGHY--ARIVTLPNG--RFALKKSATAAKDQTYALYNLTQDQLSKTLMPVGEYTKEE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A ++GL +A+K DSQ+ICFV Y ++ + G+ V G ILGRH GI Sbjct: 179 VREIAAKIGLLVANKPDSQEICFVPDNNYAGFIEDYTGQKIIPGNFVDTKGNILGRHQGI 238 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 I+YT+GQR+GLG+A+G P FVV + ++ V++G + + R+ ++N + FE Sbjct: 239 IHYTVGQRKGLGIALGRPAFVVEIRPETNEVVIGSNDDIFTDRLIANKLNAMAVEEFE-- 296 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 DG + KIR + + +++ +D + +FE + V GQA VFY D V+ Sbjct: 297 --DGMEVIAKIRYNHEGSKCTIRKVSDTEIACEFETPQRAVTPGQAVVFYQGDI----VV 350 Query: 379 GGGII 383 GGG I Sbjct: 351 GGGTI 355 >gi|304436306|ref|ZP_07396284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370711|gb|EFM24358.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 361 Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 150/364 (41%), Positives = 209/364 (57%), Gaps = 14/364 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVC 80 RVVVAMSGGVDSSV AALL+ GY+V+GVT++L + + G SCC+ V DARRV Sbjct: 5 RVVVAMSGGVDSSVTAALLQEQGYEVVGVTMRLSEEARDADLDGRSCCSLSSVDDARRVA 64 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + HYV D+ + F+ VI F YA G TP PC+ CNR +KF LL TR LGA Sbjct: 65 DILGIPHYVMDFTDPFQRLVIDYFTQEYARGRTPNPCIACNRYIKFEGLLEKTRALGAQY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY +R+ +DG + + +D +DQSY L+ TQ+ + + FPLGD +K+ + Sbjct: 125 IATGHY--ARITHTEDGTYH--LRKGIDAAKDQSYVLYHLTQEMMDHVLFPLGDYRKDEI 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL +A K++SQ+ICFV + Y ++ G I G +LG H GI Sbjct: 181 RRMAEDYGLPVAHKAESQEICFVPRDDYKSYLRTHAPQTMQTGAITDRTGHVLGTHEGIA 240 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQRRGLG+A PL+V LD + +RVIVG + + H + +++W Sbjct: 241 FYTIGQRRGLGIAAEHPLYVTALDASENRVIVGASDEIFAHALTASDLSW----TLSRPP 296 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + KIR + +++ DG V V F + + V GQ+ VFY D+ VLG Sbjct: 297 HKPRRVRAKIRYGKREADAWMEPQGDGTVAVHFSEPQRAVTPGQSIVFYEGDA----VLG 352 Query: 380 GGII 383 GG I Sbjct: 353 GGSI 356 >gi|148656262|ref|YP_001276467.1| tRNA-specific 2-thiouridylase MnmA [Roseiflexus sp. RS-1] gi|205816909|sp|A5UV64|MNMA_ROSS1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|148568372|gb|ABQ90517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseiflexus sp. RS-1] Length = 373 Score = 266 bits (679), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 154/377 (40%), Positives = 215/377 (57%), Gaps = 22/377 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +++VAMSGGVDSS+ AALL G+DV GVTL L+ + CC+ + ARRVC Sbjct: 3 KIMVAMSGGVDSSLAAALLHEAGHDVTGVTLHLWEGDDDRLAESLCCSQEMTESARRVCA 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + +YVF+Y+ FR VI F YA+G TP PC++CNR +KF LL+ R LG D + Sbjct: 63 QLGIPYYVFNYQREFRRYVIEYFLREYASGFTPNPCLECNREIKFRALLARARTLGFDYV 122 Query: 142 ATGHYIRSRL----YVGDDG------KRRRI---MCRPMDLERDQSYFLFATTQQQLCDL 188 ATGHY R R + G+D + +R + R +D E+DQSY L+ Q L L Sbjct: 123 ATGHYARIRADETRHNGEDAGLPPAERAQRTTYRLLRAVDREKDQSYMLYMLGQDDLARL 182 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 FP+G+ K VR +A GL A++ +SQDICFV G Y ++++ G I+ L Sbjct: 183 IFPIGEYTKAEVRAMAAARGLASANRPESQDICFVPGGDYRNLLREERPDALRPGPILDL 242 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 G+ +GRH G+ YTIGQRRGLG+A G+P++V LD + VIVGP +L + + Sbjct: 243 EGREVGRHQGLPLYTIGQRRGLGIATGQPMYVTALDVARNAVIVGPESALRRESLRAEWV 302 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVF 367 ++ G++ +A F C +IR+ D VP V + G V V F + + V GQA VF Sbjct: 303 TFV-SGMWPEAP---FDCLAQIRAHADAVPARVIPGEAGTVDVHFSRPQRAVTPGQAIVF 358 Query: 368 YTSDSNEARVLGGGIIS 384 Y D VLGGG I+ Sbjct: 359 YDGDV----VLGGGRIA 371 >gi|284047421|ref|YP_003397760.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Acidaminococcus fermentans DSM 20731] gi|283951642|gb|ADB46445.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Acidaminococcus fermentans DSM 20731] Length = 356 Score = 265 bits (678), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 146/366 (39%), Positives = 208/366 (56%), Gaps = 14/366 (3%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGSCCAGQDVYDARRV 79 M+ ++AMSGGVDSSV A L++ GYD IG ++LYN+ A +CC+ DV DAR V Sbjct: 1 MKALIAMSGGVDSSVSAKLMQDAGYDCIGCNMKLYNNPDAGYCSTKTCCSLSDVEDARSV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C + + YVF+Y E F++ V+ FA SY G TP PC+DCN+ +KF L R+LG D Sbjct: 61 CARLGMPFYVFNYTEEFKHDVMEKFARSYTLGHTPNPCIDCNKFLKFGALYQRARELGCD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 + TGHY R R ++ + + + +D ++DQSY L+ TQ+QL FPLG K Sbjct: 121 CVVTGHYARIR---KNETTGKYELLKALDPKKDQSYVLYNLTQEQLAHTCFPLGGYHKTH 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R++A E G + K DSQDICFV G+Y D V+RI G + L G ++G+H GI Sbjct: 178 TREIAEENGFINSHKPDSQDICFVPNGQYTDAVQRILDYRPQPGPFLDLEGNVIGQHRGI 237 Query: 260 INYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I YT+GQ + LG+ + PL+VV +D + ++VGP E+L + + E NW+ + Sbjct: 238 IYYTLGQHKHLGLNQPDFPLYVVKIDPKKNAIVVGPSEALFSRKASVGEANWISGEVPAG 297 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 V +C VK+R QD P V D + F++ + + GQA V Y + V Sbjct: 298 PV----RCQVKVRYRQDAQPATVTPTGKDTFTIQFDEPQRAITPGQAAVLYDGEV----V 349 Query: 378 LGGGII 383 LGGG I Sbjct: 350 LGGGTI 355 >gi|325265024|ref|ZP_08131751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium sp. D5] gi|324029714|gb|EGB91002.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium sp. D5] Length = 356 Score = 265 bits (677), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 149/366 (40%), Positives = 217/366 (59%), Gaps = 17/366 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ R + G CC V DARRV Sbjct: 3 KVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDRAVQEENGGCCGLSAVEDARRV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + +YV ++++ F+ VI F Y G TP PC+ CNR VK+ LL + +GA+ Sbjct: 63 AAELEIPYYVMNFKQEFKEHVIDYFVEEYRNGRTPNPCIACNRYVKWESLLHRSMAIGAE 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY +R+ D+G R + R L +DQ+Y L+ TQ+QL P+G+ K+ Sbjct: 123 YIATGHY--ARVVKLDNG--RFTLRRSATLAKDQTYALYNLTQEQLEHTLMPVGEYSKDE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNG 258 VR +A ++GL +A+K DSQDICFV G Y ++ AGI + EG+ V +G++LGRH G Sbjct: 179 VRRIAEKIGLMVANKPDSQDICFVPDGDYASYIEE-TAGIRMPEGNFVSSDGRVLGRHKG 237 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I +YT+GQR+GLG+A+G P FV+ + +++ V++G E H + +N++ ED Sbjct: 238 ITHYTVGQRKGLGLALGYPAFVLEIRPDTNEVVIGTNEESMTHTLKADRLNFMS---VED 294 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + + F KIR + +++ D V FE+ + V GQA VFY + V Sbjct: 295 -LTEPLRVFTKIRYNHKGAWCIIEKTGTDEVLCTFEEPQRAVTPGQAVVFYDGEY----V 349 Query: 378 LGGGII 383 LGGG I Sbjct: 350 LGGGTI 355 >gi|255659674|ref|ZP_05405083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mitsuokella multacida DSM 20544] gi|260848239|gb|EEX68246.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mitsuokella multacida DSM 20544] Length = 366 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 154/374 (41%), Positives = 208/374 (55%), Gaps = 14/374 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKGSCCAGQDVYDARRVC 80 +VVVAMSGGVDSS+ AALLK GY+ IGVT++L SR + CC+ V DARRV Sbjct: 5 KVVVAMSGGVDSSLTAALLKEQGYEAIGVTMRLSEESRDFDENDRGCCSLSSVDDARRVA 64 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + I + HY +++E F+ VI F + YA G TP PC+ CNR VKF LL +LGAD Sbjct: 65 EIIGIPHYTMNFKEMFQEKVIDYFLADYAKGWTPNPCIACNRYVKFEGLLQKAMELGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + D R ++ + +D +DQSY L+ QQ L PLGD K Sbjct: 125 VATGHYAR----IAQDESGRYVLKKGIDTHKDQSYALYHLNQQSLAHFLMPLGDYTKVET 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A L +A K DSQ+ICFV Y ++ N GDIV G +LG H G+ Sbjct: 181 REMAERYKLPVAHKPDSQEICFVPHDDYKAYLRAKNPSCLHPGDIVDKEGHVLGHHEGVP 240 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQR+GLG+A EPL+VV LD +RV+VG + + ++NW+ DA+ Sbjct: 241 LYTIGQRKGLGIAHPEPLYVVDLDMAHNRVVVGGAGDVFSDGLIAGDLNWIAI----DAL 296 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + K+R + V+ G V V F + + V GQ+ VFY D+ V+G Sbjct: 297 EAPIEVTAKVRYGRREGRAHVEPLAGGKVRVHFAEPQRAVTPGQSVVFYAGDT----VVG 352 Query: 380 GGIISGSKRSDAVE 393 GGII + R +A E Sbjct: 353 GGIIEKAIRKEAAE 366 >gi|163781841|ref|ZP_02176841.1| hypothetical protein HG1285_03123 [Hydrogenivirga sp. 128-5-R1-1] gi|159883061|gb|EDP76565.1| hypothetical protein HG1285_03123 [Hydrogenivirga sp. 128-5-R1-1] Length = 356 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 159/376 (42%), Positives = 222/376 (59%), Gaps = 30/376 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS---CCAGQDVYDAR 77 MRV V MSGGVDSSV A L+K G++VIGVTL+ +++ +A + +G+ CC+ +DV DA Sbjct: 1 MRVAVGMSGGVDSSVTALLMKEKGHEVIGVTLR-FHTIEACEVEGTHNVCCSPKDVQDAA 59 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV + + H FD+E F+ VI F Y+ G TP PC CNR VK R + Sbjct: 60 RVSQKLGIPHLTFDWERIFKERVIDYFVEEYSRGRTPNPCAVCNREVKTGYFARYLRAVA 119 Query: 138 -ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 D LATGHY R + +D R++ R D +RDQSYFL ++ L L FPLG+M Sbjct: 120 DIDRLATGHYAR----IEEDPSFGRVIKRGTDRKRDQSYFLALVRREDLDLLEFPLGNMT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 KE VR+LAR GL++ADK DSQ++CF+ G+Y + + + EG+I H++G+ L Sbjct: 176 KEEVRELARSYGLEVADKRDSQEVCFLMGKSPGEYLEKIVGLR-----EGEIRHVSGKTL 230 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW-LG 312 GRH+GI N+TIGQRRGLG++ +PL+VV +D +++ V VG E L ++Y+RE+N + Sbjct: 231 GRHSGIYNFTIGQRRGLGISYSKPLYVVDIDASTNTVFVGEEEYLYNDKLYVRELNLHVP 290 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 +ED +IR PV V V+R DG V F + G+ GQ FY+ D Sbjct: 291 MERWEDVS-------AQIRYRHSPVRVESVKRTSDGYEVKFREEVRGITPGQVVAFYSGD 343 Query: 372 SNEARVLGGGIISGSK 387 +LGGGII K Sbjct: 344 I----LLGGGIIEAYK 355 >gi|291519700|emb|CBK74921.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Butyrivibrio fibrisolvens 16/4] Length = 354 Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 139/365 (38%), Positives = 211/365 (57%), Gaps = 15/365 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRV 79 M+ ++AMSGGVDSSV A L+K +GY+ IG T++LY + +CC+ DV DA+ V Sbjct: 1 MKALIAMSGGVDSSVAALLMKENGYECIGCTMKLYGNEDVDLSDTSTCCSLDDVQDAKDV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + HY ++++++F+ VI F Y TP PC++CN+ +KF +L ++LG D Sbjct: 61 ARKLGMLHYTWNFKDQFKEKVIDNFTYCYEHAMTPNPCIECNKHLKFCELYRRAKELGCD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 + TGHY R R D+G + + + D +DQSY L++ TQ +L FPLG+ K+ Sbjct: 121 KIVTGHYARVR--KCDNGYQ---LLKGKDASKDQSYVLYSMTQDELAHTDFPLGEYSKDE 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R +A + A+K DSQDICFV G Y +KR GD V + G +LGRH G+ Sbjct: 176 IRRIAEKNEFVNANKPDSQDICFVPNGDYVSALKRFTGKEYEPGDFVDMEGNVLGRHKGL 235 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 + YTIGQR+GLG++ PL+VV LD ++V++G E L +Y+ +INW+G + Sbjct: 236 VCYTIGQRKGLGISAAYPLYVVKLDTEKNQVVLGKNEDLFSRDVYVEDINWIG----PEE 291 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + F+C K+R P VQR + F++ + + GQ+ VFY + VL Sbjct: 292 LPETFRCAAKVRYRMVEQPCEVQRLGKTSAKILFDEPQRAITPGQSAVFYDGEI----VL 347 Query: 379 GGGII 383 GGGII Sbjct: 348 GGGII 352 >gi|210615810|ref|ZP_03290791.1| hypothetical protein CLONEX_03009 [Clostridium nexile DSM 1787] gi|210150146|gb|EEA81155.1| hypothetical protein CLONEX_03009 [Clostridium nexile DSM 1787] Length = 362 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 147/369 (39%), Positives = 214/369 (57%), Gaps = 15/369 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK +GYDVIGVT+Q++ R + G CC V DARRV Sbjct: 5 KVVVGMSGGVDSSVAAYLLKEEGYDVIGVTMQIWQDEDRAIQEENGGCCGLTAVDDARRV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + +YV ++++ F+ VI F Y G TP PC+ CNR VK+ LL + +GAD Sbjct: 65 ASDLGIPYYVMNFKKEFKENVIDYFVDEYLNGRTPNPCIACNRYVKWESLLKRSMDIGAD 124 Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R +L G R + R L +DQ+Y L+ TQ+QL P+G KE Sbjct: 125 YIATGHYARIEKLPNG-----RYSLRRSATLAKDQTYALYNLTQEQLKRTLMPVGAYAKE 179 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A ++GL +A+K DSQDICFV G Y + ++ EG+ V +G ++GRH G Sbjct: 180 EVREIAEKIGLRVANKPDSQDICFVPDGNYAEFIEETIEKKIPEGNFVLSDGTVVGRHKG 239 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I +YT+GQR+GLG+++G P+FV+ + ++ V++G E + + ++N++ ++ Sbjct: 240 ITHYTVGQRKGLGLSLGHPVFVLEIRPETNEVVIGSNEESLTYTLRANQLNFMSIEDLKE 299 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + F KIR + V+R +D V FE+ + V GQA VFY D V Sbjct: 300 G--EKIRVFAKIRYNHKGAWCEVERIGEDEVRCTFEEQQRAVTPGQAVVFYDGDY----V 353 Query: 378 LGGGIISGS 386 LGGG I G Sbjct: 354 LGGGTIIGE 362 >gi|254519285|ref|ZP_05131341.1| tRNA-specific 2-thiouridylase mnmA [Clostridium sp. 7_2_43FAA] gi|226913034|gb|EEH98235.1| tRNA-specific 2-thiouridylase mnmA [Clostridium sp. 7_2_43FAA] Length = 360 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 139/367 (37%), Positives = 219/367 (59%), Gaps = 17/367 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GY+VIGVT++ ++ +R+G CC+ V DARRV Sbjct: 4 KVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMKHFDDEDEDYIEREGGCCSLSSVEDARRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + YV ++++ F+ VI F Y G+TP PC+ CN+ +KF + L + +GAD Sbjct: 64 ADKLGIPFYVLNFKDSFKEKVIDYFVQEYMEGKTPNPCIACNKHIKFDEFLRRAKGIGAD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY +++ +DG R ++ + D ++DQ+Y L+ TQ+QL P GD K+ Sbjct: 124 YVATGHY--AKIEKNEDG--RYLLIKADDDKKDQTYALYNFTQEQLSQTLMPCGDYTKDK 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R++A+E+GL + +K DS++ICF+ + + EG+ V NG ILG+H GI Sbjct: 180 IREIAKEIGLAVHNKKDSEEICFIPDNNHGKYILNARPNQVREGNFVDKNGNILGKHKGI 239 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFED 318 + YTIGQR+GLG+A+G P+FV ++ ++ V++GP E + + +++N++ + L E+ Sbjct: 240 VYYTIGQRKGLGLALGTPIFVTDINPRTNEVVIGPEEDVFKTDLVAKDVNFIPFNSLSEE 299 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 V F K+R P + DG V V F++ + + GQ+ VFY + V Sbjct: 300 ITV-----FAKVRYQAKPSEAIISPLADGRVKVSFKEKQRAITKGQSVVFYDGNV----V 350 Query: 378 LGGGIIS 384 +GGGII Sbjct: 351 VGGGIIE 357 >gi|310821277|ref|YP_003953635.1| tRNA-specific 2-thiouridylase mnma [Stigmatella aurantiaca DW4/3-1] gi|309394349|gb|ADO71808.1| tRNA-specific 2-thiouridylase MnmA [Stigmatella aurantiaca DW4/3-1] Length = 348 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 159/364 (43%), Positives = 211/364 (57%), Gaps = 18/364 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MRVVVAMSGGVDSS AALLK G++VIG+TL+++ S + + GSCC+ D+ DAR V Sbjct: 1 MRVVVAMSGGVDSSAAAALLKEQGHEVIGITLRVW-SYEGKAQCGSCCSPDDIDDARAVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +++ YV + EE F++ VI PF SY G TP+PCV CNR VKF+ LL R LGA Sbjct: 60 QKLDIPFYVANAEEIFKDRVINPFVQSYLGGRTPIPCVACNRDVKFNFLLKRARALGAQ- 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R V +G R ++ R +DL +DQSYFLF Q +L D+ FP+G M K V Sbjct: 119 LATGHYAR----VEREGD-RHVLRRAVDLAKDQSYFLFTLGQAELADVLFPVGGMTKAEV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A L + K +S +ICFV G Y V+++ AG GDI+ +G +LG H GI Sbjct: 174 RAVAERHALPTSQKPESMEICFVPDGDYAGFVEKV-AGPQPSGDIIDTDGHVLGTHGGIH 232 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +T+GQRRGL + GE +V L+ ++RV+VG + L + +W+ D Sbjct: 233 RFTVGQRRGLNLGGGEARYVQRLEPEANRVVVGTASAAGRDAFGLLQPHWVDAPPAPDQT 292 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 V+ V+IR VP V+ + G V V E V GQA V Y D RVLG Sbjct: 293 VE-----VRIRHRHAGVPGRVEISTHGLVSVRLEAPARAVTPGQAAVVYAQD----RVLG 343 Query: 380 GGII 383 GG I Sbjct: 344 GGWI 347 >gi|20807693|ref|NP_622864.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Thermoanaerobacter tengcongensis MB4] gi|24638309|sp|Q8RAH7|MNMA1_THETN RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 gi|20516242|gb|AAM24468.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Thermoanaerobacter tengcongensis MB4] Length = 364 Score = 263 bits (673), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 147/370 (39%), Positives = 216/370 (58%), Gaps = 14/370 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRV 79 RVVV MSGGVDSSV A LLK G++VIGVT++++ KA SCC+ + ++DA++V Sbjct: 6 RVVVGMSGGVDSSVTAYLLKEQGFEVIGVTMRVWVDPYGKARDDDKSCCSLKAIHDAKKV 65 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + + HY + E F + ++ F Y G TP PCV CNR +KF DLL +LGA Sbjct: 66 AEILGIPHYTVNLSEVFYDKIVKYFIDEYLKGRTPNPCVFCNRFIKFGDLLEKAHELGAY 125 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R D+ ++R ++ + +D ++DQSY L+ TQ+QL FPLG+ KE Sbjct: 126 YIATGHYVRKEY---DEDRKRYLLKKGLDFKKDQSYMLYRLTQEQLKHALFPLGNYTKEE 182 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA ++GL +ADK +SQ+ICF+ Y +KR G+ ++G LG H GI Sbjct: 183 VRALAEKIGLPVADKRESQEICFIPDNDYKAFIKRQIKKDVKPGEFRDIHGNFLGYHKGI 242 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 INYTIGQR+GLG++ PL+VV +D ++ VIVG +E + + N++ E+ Sbjct: 243 INYTIGQRKGLGLSSDRPLYVVDIDPENNVVIVGHQEDVWGEELISSNNNFISIEKLEEE 302 Query: 320 VVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + K KIR ++++ + DD V V F + + + GQ+ VFY D V+ Sbjct: 303 I----KVTAKIRYTAKEDEAIIKPYGDDKVLVRFLRPQRAITPGQSVVFYDGDV----VV 354 Query: 379 GGGIISGSKR 388 GGGII R Sbjct: 355 GGGIIEKKVR 364 >gi|167629936|ref|YP_001680435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Heliobacterium modesticaldum Ice1] gi|205816855|sp|B0TFA7|MNMA_HELMI RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|167592676|gb|ABZ84424.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Heliobacterium modesticaldum Ice1] Length = 385 Score = 262 bits (670), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 152/365 (41%), Positives = 202/365 (55%), Gaps = 16/365 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVVAMSGGVDSSV AALL GYDVIGVTLQ++ +G CC+ V DA+RV Sbjct: 5 VVVAMSGGVDSSVTAALLLEQGYDVIGVTLQIWPKDAPEGAEGGCCSLSAVEDAKRVASK 64 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + V HYV ++ + F VI F Y AG+TP PC+ CNR +KF LL + LGA +A Sbjct: 65 LGVPHYVLNFRDYFETEVIEYFGREYLAGQTPNPCIRCNRVIKFEGLLQKSLALGAAKVA 124 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R D R + R +D +DQSY LF TQ+QL FPLG K +R+ Sbjct: 125 TGHYARIEQ---DSATGRYRLGRGIDANKDQSYALFNMTQEQLSRTLFPLGGFTKPEIRE 181 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHNGIIN 261 A ++GL +A K DSQ+ICF+ Y + +R G V G ++G H G+ Sbjct: 182 KAAQLGLAVASKPDSQEICFIPDNDYRRFLEERYPDHRFQPGPFVDQEGNVIGTHRGLPF 241 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDAV 320 YT+GQR+GLGVA G P +V+ LD + V++GP E+++ R+ ++NW+ GL Sbjct: 242 YTVGQRKGLGVAFGFPAYVIALDVEHNAVVIGPDEAVKGRRLLADDLNWIDIAGLKAPME 301 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 V+ KIR S P + DG V V+F + + GQA VFY D V+ Sbjct: 302 VE-----AKIRYSASPAIAVISPVKDGSAVIVEFAAPQRAITPGQAVVFYRGDW----VV 352 Query: 379 GGGII 383 GGG I Sbjct: 353 GGGTI 357 >gi|149921054|ref|ZP_01909513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Plesiocystis pacifica SIR-1] gi|149818058|gb|EDM77515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Plesiocystis pacifica SIR-1] Length = 367 Score = 262 bits (669), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 154/371 (41%), Positives = 214/371 (57%), Gaps = 16/371 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGSCCAGQDVYDARRV 79 MRVV AMSGGVDSSV AAL+ G++VIG+T+ LY+++ K R G+CC+ ++ ARR Sbjct: 1 MRVVCAMSGGVDSSVAAALMVEAGHEVIGLTMALYDAKGERKGRGGTCCSPAEIDLARRA 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + V HY D ERF+ AVI FA Y AG TP PC CN VKF LL+ R LGA+ Sbjct: 61 CDLLGVPHYTVDERERFQAAVIDDFAREYLAGRTPNPCARCNEHVKFGPLLARARALGAE 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +L TGHY + DG+ + R +D +DQSYFLFA ++ L ++ FPLG K Sbjct: 121 LLVTGHYAQIV-----DGEAGPALHRGVDASKDQSYFLFAMGRETLAEVAFPLGAWSKAQ 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE------GDIVHLNGQIL 253 VR+ ARE+G+ AD DSQ++CFV G + +VV+ + L+ G I +G +L Sbjct: 176 VREKARELGMPNADAPDSQELCFVPGGDHGEVVEARAKALGLDTARLEPGPIRDESGAVL 235 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G H GI T+GQRRGLGV+ P +V+ + + V+VG E LEV + + + L D Sbjct: 236 GEHRGIHRVTVGQRRGLGVSADRPRYVLRVLPSERAVVVGDPEGLEVRELMVGDFRALAD 295 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + + + V+ RS+ P V + + + V F++ VA GQA V Y + + Sbjct: 296 LPVGEPIA--ARVQVRHRSAASPATVEIL-GEGALKVRFDQPIRAVAPGQAAVVYAGERD 352 Query: 374 EA-RVLGGGII 383 RVLGGG I Sbjct: 353 AGDRVLGGGWI 363 >gi|292670858|ref|ZP_06604284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Selenomonas noxia ATCC 43541] gi|292647479|gb|EFF65451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Selenomonas noxia ATCC 43541] Length = 365 Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 153/372 (41%), Positives = 214/372 (57%), Gaps = 14/372 (3%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQD 72 +++ K RVVVAMSGGVDSS+ AALL+ GYDV+GVT++L +R A SCC+ Sbjct: 1 MERKMKKERVVVAMSGGVDSSLAAALLQERGYDVVGVTMRLSAENRDAPSNDRSCCSLIS 60 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 V DARRV D + + HYV D+ E F++AVI F + Y G TP PC+ CNR +KF LL Sbjct: 61 VDDARRVADVLGIPHYVMDFTEPFQHAVIDYFFNEYLHGRTPNPCIACNRFIKFEGLLHK 120 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 +++LGA +ATGHY +R+ G DG R + + +DLE+DQSY L+ Q+ L + PL Sbjct: 121 SKELGASYIATGHY--ARIDHGKDGTYR--LRKGLDLEKDQSYVLYHMNQEILAHVLLPL 176 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G K R +A + L +A K++SQ+ICFV + Y ++ G+IV G + Sbjct: 177 GVFSKHETRRMAEQYHLPVAYKAESQEICFVPRDDYKSYLREKRPESCCPGNIVDRAGNV 236 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 LG H GI YTIGQR+GLG+A +PL+V LD +RV+VG + + ++NW Sbjct: 237 LGIHEGIAFYTIGQRKGLGIAATQPLYVTALDTLHNRVVVGTANEVYARGLTASDLNW-- 294 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 A+ + KIR + + + DG V+V F + + V GQ+ VFY D Sbjct: 295 --TMPIALDNPRTVQAKIRYGKRSASATITSHKDGEVHVLFSELQRAVTPGQSIVFYEDD 352 Query: 372 SNEARVLGGGII 383 VLGGGII Sbjct: 353 V----VLGGGII 360 >gi|309388972|gb|ADO76852.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Halanaerobium praevalens DSM 2228] Length = 360 Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 144/368 (39%), Positives = 219/368 (59%), Gaps = 17/368 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80 +V++AMSGGVDSSV AALLK +GY+VIG T+ ++ + +A+ R+ CC+ V DA+RV Sbjct: 3 KVMIAMSGGVDSSVAAALLKEEGYEVIGGTMHIFPDYEEATDREDHCCSYSAVRDAKRVA 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + H+VF+ E F+ VI F Y+ G TP PCV CN+ +KF+ L ++G D Sbjct: 63 QKLEIPHFVFNLREEFQEKVIDYFVDEYSLGRTPNPCVMCNKEIKFAALHKKAIEIGCDY 122 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A+GHY + G R I+ + +D +DQSY L+ Q+QL FPL + K + Sbjct: 123 IASGHYAKIEKENG-----RYILKKGLDENKDQSYMLYVLNQEQLSQTLFPLSEYTKSEI 177 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R+ A+ +G +I +K++SQ+ICFV Y + I+ G I+ G +G H G+ Sbjct: 178 REKAKNLGFEIHNKAESQEICFVPDDDYVRFLDNNYPEISNTGPILDSEGNKVGEHEGLA 237 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +YTIGQRRGLG++MG P++V LD + VIVG +S+ + E+N++ FED Sbjct: 238 HYTIGQRRGLGISMGYPIYVTNLDYEKNAVIVGKDKSVFSDGLIAEELNFIP---FED-- 292 Query: 321 VDG-FKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 +DG + +IR + PV ++++ +D V V+FE+++ V GQ+ VFY D VL Sbjct: 293 IDGRMEVEAQIRYNSFPVKAYIEKIKNDEVKVEFEEAQRAVTPGQSVVFYLGD----LVL 348 Query: 379 GGGIISGS 386 GGGII S Sbjct: 349 GGGIIKKS 356 >gi|166367576|ref|YP_001659849.1| tRNA-specific 2-thiouridylase MnmA [Microcystis aeruginosa NIES-843] gi|205816884|sp|B0JVR4|MNMA_MICAN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|166089949|dbj|BAG04657.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Microcystis aeruginosa NIES-843] Length = 352 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 157/367 (42%), Positives = 216/367 (58%), Gaps = 21/367 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV AA L GYDVIG+TL L K KG CC+ + + DA +C+ Sbjct: 3 KVVVGLSGGVDSSVAAAALHAQGYDVIGLTLWLM------KGKGQCCS-EGMVDAAFICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + V H++ D E F+ +I S Y AG TPLPC CN+ VKFS +L R+ L D Sbjct: 56 QLGVPHHIVDSRELFQKEIIDYLVSGYEAGITPLPCSQCNKAVKFSPMLHYARETLQTDT 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R ++ R + R +D +DQSYFL+ TQ L FPLG+ K Sbjct: 116 IATGHYARIRFSPENN---RYQLLRAVDQNKDQSYFLYDLTQDVLRGTLFPLGEQTKAET 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNGI 259 R +A+E GL ADK DSQD+C ++ + + ++ IA+ EGDIV L+G++LG+H+GI Sbjct: 173 RRIAQEFGLKTADKPDSQDLCLIE--AHGTMRSFLDKYIAVSEGDIVDLDGKVLGKHSGI 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQR+G+G+A EPL+VV LD +RVIVG RES + +NW+ + E Sbjct: 231 HHYTIGQRKGIGIAAAEPLYVVKLDPVMNRVIVGNRESAVSAACLVGRMNWV--SIAEPT 288 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + V+ RS PV V N+ V + F++ + + GQA V Y + VLG Sbjct: 289 TPIRAQVQVRYRSPAVPVNVIPLENNQ-VKLVFDQPQFSITPGQAAVIYEGEI----VLG 343 Query: 380 GGIISGS 386 GGIISG+ Sbjct: 344 GGIISGA 350 >gi|210622568|ref|ZP_03293250.1| hypothetical protein CLOHIR_01198 [Clostridium hiranonis DSM 13275] gi|210154151|gb|EEA85157.1| hypothetical protein CLOHIR_01198 [Clostridium hiranonis DSM 13275] Length = 357 Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 137/364 (37%), Positives = 221/364 (60%), Gaps = 16/364 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++ MSGGVDSSV A LLK GYDVIGV + L N +++ + DARRV + Sbjct: 4 KVMLGMSGGVDSSVAAYLLKEQGYDVIGVNMMLSNDNTEEEKR---MTEDSIRDARRVAE 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +V D+ F+ VI F YA G TP PC+ CN+ +KF V + G D + Sbjct: 61 KLDIPLHVLDFRREFKEKVIDDFIKEYAEGRTPNPCIVCNKFIKFGLFFDVAEKFGCDYV 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R D+ R ++ + ++DQ+Y L+ Q+QL + P+G+ +K++VR Sbjct: 121 ATGHYARVER---DEKTGRLVLKKGESAKKDQTYNLYNIKQEQLERILLPIGNYEKDTVR 177 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGII 260 ++A+++GLD+ +K DSQ+ICF++ Y +K N+ I ++ G+ V +G +LG+HNGII Sbjct: 178 EIAKKIGLDVHNKKDSQEICFIKDNDYVRYLKE-NSDIKIKTGEFVEADGTVLGKHNGII 236 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 NYTIGQR+GLG+A G+P+FVV ++ +RV++G + L + ++++N + F+ A Sbjct: 237 NYTIGQRKGLGIAFGKPMFVVDINAKKNRVVLGSNDDLFKKELVIKDVNTIP---FDFAD 293 Query: 321 VDGFKCFVKIRSSQDP-VPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 VD FK + K+R + P + + +D+ V FE+++ + GQ+ V Y D ++G Sbjct: 294 VDEFKVYAKVRYAAKPSLATVTKLSDNTAKVVFEEAQRAITKGQSLVMYDGDI----LVG 349 Query: 380 GGII 383 GGII Sbjct: 350 GGII 353 >gi|197303193|ref|ZP_03168235.1| hypothetical protein RUMLAC_01916 [Ruminococcus lactaris ATCC 29176] gi|197297733|gb|EDY32291.1| hypothetical protein RUMLAC_01916 [Ruminococcus lactaris ATCC 29176] Length = 358 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 141/365 (38%), Positives = 210/365 (57%), Gaps = 15/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + + + G CC V DARRV Sbjct: 5 KVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEENTVQEENGGCCGLSAVDDARRV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 I + +YV ++++ F+ +VI F Y AG TP PC+ CNR VK+ LL + +GAD Sbjct: 65 AAAIGIPYYVMNFKDEFQKSVIEYFTKEYLAGRTPNPCIACNRYVKWEALLQRSLSIGAD 124 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + R + R +E+DQ+Y L+ TQ+QL P+G+ K+ Sbjct: 125 YIATGHYAR----IEHLPNGRYAIRRSATMEKDQTYALYNLTQEQLARTLMPVGEYSKDR 180 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R++A E+GL +A K DSQDICFV G Y ++ + G+ V G++LG+H GI Sbjct: 181 IREMADEIGLLVAHKPDSQDICFVPDGDYASFIENTTDQVLPTGNFVTPEGKVLGKHKGI 240 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 I+YT+GQR+GLG+A+G P FV+ + ++ V++G E + + E+N++ + Sbjct: 241 IHYTVGQRKGLGLALGYPAFVLEIRPETNEVVIGTYEESLTYTVRANELNFMS----VEQ 296 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + + F KIR + V+R +D + F++ GQA V Y + VL Sbjct: 297 ITEPVRIFAKIRYNHKGAWCTVERTGEDEIVCTFDEPIRAATPGQAVVLYDGE----YVL 352 Query: 379 GGGII 383 GGG I Sbjct: 353 GGGTI 357 >gi|219849660|ref|YP_002464093.1| tRNA-specific 2-thiouridylase MnmA [Chloroflexus aggregans DSM 9485] gi|254811448|sp|B8G5F1|MNMA_CHLAD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|219543919|gb|ACL25657.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chloroflexus aggregans DSM 9485] Length = 359 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 158/364 (43%), Positives = 218/364 (59%), Gaps = 15/364 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V+VAMSGGVDSS+ AALL+ G+ V GVT+ L++ + R+ CCA + ARRVC Sbjct: 4 VLVAMSGGVDSSLAAALLQEAGHQVTGVTMHLWDDDEQGLRESLCCAAEAATSARRVCAL 63 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + YVF+Y+ FR VI F +Y G TP PCV+CNR +KF LL R LG D +A Sbjct: 64 LGIPFYVFNYQREFRRHVIEYFIRAYTHGLTPNPCVECNRMIKFRALLDRARALGFDAVA 123 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R V DD R ++ R +D E+DQSY L Q L L FP+G+ K+ VR+ Sbjct: 124 TGHYAR---IVRDDCGRYQLW-RAVDTEKDQSYMLHMLGQADLARLLFPIGEYTKQQVRE 179 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNGIIN 261 +A L A++ +SQDICFV G Y +++ RI A +L G IV L G+ +GRH G+ Sbjct: 180 MAAARCLPSANREESQDICFVPDGDYRNLL-RIEAPESLIPGPIVDLEGREIGRHRGLPL 238 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YT+GQRRGLG+ GEP +VV +D + +IVGP E+L R + + W+ D Sbjct: 239 YTVGQRRGLGLGGGEPRYVVAIDPARNALIVGPVEALNRERFIVTDARWVDDA----PPA 294 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 + F C V++R+ +P+P V DG + V+ E+ + V+ GQA VFY + RVLGG Sbjct: 295 ETFHCQVQVRAHAEPLPARVSAQPDGRWLVELERPQRAVSPGQAAVFY----DGVRVLGG 350 Query: 381 GIIS 384 G I+ Sbjct: 351 GWIA 354 >gi|153005212|ref|YP_001379537.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaeromyxobacter sp. Fw109-5] gi|205811178|sp|A7HCV7|MNMA_ANADF RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|152028785|gb|ABS26553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaeromyxobacter sp. Fw109-5] Length = 349 Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 155/363 (42%), Positives = 205/363 (56%), Gaps = 15/363 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MRV+VA+SGGVDSS AALL +G+DVIGV++++ + A +R SCCA D+ DAR Sbjct: 1 MRVLVALSGGVDSSTAAALLVAEGHDVIGVSMRVADYSDA-RRGRSCCAPDDLEDARAAA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +++ YV + E RFR VI PF Y G TP PCV CN VKF LL+ R LGA Sbjct: 60 RRLDIPFYVANVEARFRERVIEPFVRDYVEGRTPNPCVACNSDVKFDWLLARARALGAK- 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R G R +CR D +DQ+YFL+ Q+ L D+ FP+GD+ K V Sbjct: 119 LATGHYARVERRGG-----RFALCRAGDPAKDQTYFLYGLGQEALRDVLFPVGDLAKRDV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A+K++SQ+ICFV QG D V G G+IV G++LGRH+G+ Sbjct: 174 RAVAAQAGLPNAEKAESQEICFVTQGDAGDFVALRAPGSVRAGEIVSTAGEVLGRHDGVH 233 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +T+GQRRGLG+A P +VV L+ ++RV+VG R + E+ W+ V Sbjct: 234 RFTVGQRRGLGLAGPAPRYVVRLEPGTARVVVGSAGEASRDRFAVTEVRWIAGAPPPRPV 293 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 VK+R + V + G V + GVA GQA VFY D VLGG Sbjct: 294 A----ARVKVRHRHEGEEGTVTPDGGGGQVRLARPVRGVAPGQAAVFYDGDE----VLGG 345 Query: 381 GII 383 G I Sbjct: 346 GRI 348 >gi|220931733|ref|YP_002508641.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Halothermothrix orenii H 168] gi|259495830|sp|B8CWH7|MNMA_HALOH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|219993043|gb|ACL69646.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Halothermothrix orenii H 168] Length = 358 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 141/364 (38%), Positives = 209/364 (57%), Gaps = 14/364 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80 RV+VAMSGGVDSSV AALLK GY+VIG T++++ + + +G CC+ + DARRV Sbjct: 3 RVLVAMSGGVDSSVTAALLKEQGYEVIGGTMEIFPDYEQPPLDEGGCCSLSSIEDARRVA 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 I + HY F+ ++ F VI F + Y TP PCV CN +KF LL +L AD Sbjct: 63 HHIGIRHYTFNLKKVFEEEVINNFVNEYKNARTPNPCVVCNNEIKFRSLLKKALELDADY 122 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY V + + ++ + D+++DQ+Y L+ TQ QL PLG+ K+ V Sbjct: 123 IATGHY----AIVEHNVNGKHLLKKAKDVDKDQTYMLYGLTQFQLSHTLMPLGNYTKQEV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A++ G I +K +SQ+ICFV Y + G+ G ++ +G ILG+H G+ Sbjct: 179 RQMAKDFGFRIHNKPESQEICFVPDNNYTRFLDENYPGLGKPGPVMDTDGNILGKHKGLH 238 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +YTIGQRRGLG+++G P++VV LD+ + VI+GP E + + ++NW+ D + Sbjct: 239 HYTIGQRRGLGISLGYPVYVVKLDREKNAVIIGPEEEVYSKSLIANKVNWISI----DKL 294 Query: 321 VDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + K +IR +S + ND+ V V F+K + V GQ+ VFY V+G Sbjct: 295 TEPIKVTARIRYNSPESHAKIYPVNDNEVKVVFDKKQRAVTPGQSVVFYDGKV----VVG 350 Query: 380 GGII 383 GGII Sbjct: 351 GGII 354 >gi|309790491|ref|ZP_07685051.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oscillochloris trichoides DG6] gi|308227478|gb|EFO81146.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oscillochloris trichoides DG6] Length = 359 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 139/363 (38%), Positives = 209/363 (57%), Gaps = 13/363 (3%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++VAMSGGVDSS+ AALL G+ V+GVT+ L++ + CC+ + ARRVC+ Sbjct: 4 IMVAMSGGVDSSLTAALLHEQGHTVVGVTMHLWDGDDDHLAESLCCSLEMTASARRVCNQ 63 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + +YVF+Y+ FR AV+ F +Y+ G TP PC+ CNR +KF LL+ QLG D +A Sbjct: 64 LGIPYYVFNYQREFRRAVVDAFVHAYSHGYTPNPCIACNREIKFRALLARANQLGYDYVA 123 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY+R R+ D + +++ R D +DQSY L+ Q +L L FPLG+ +K VR Sbjct: 124 TGHYVRRRV---TDANQYKLL-RAHDHGKDQSYVLYMLGQTELARLLFPLGEYQKSEVRA 179 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A GL+ AD+ +SQDICFV G Y +++ + G IV +G+ +G+H G+ Y Sbjct: 180 MATARGLESADRPESQDICFVPDGDYRQLLRTEAPASLVPGPIVDQHGREVGQHQGLPLY 239 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQRRGLGV PL+V LD + +IVGP +L H ++ + + E Sbjct: 240 TIGQRRGLGVYAATPLYVTGLDTARNTLIVGPAAALLRHEFWVEAASSVAATWPESP--- 296 Query: 323 GFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 F C V++R+ P V + + +++ + ++ GQA V Y + RV+GGG Sbjct: 297 -FTCEVQVRAHGATAPATVTAHPGERLHIQLQSPIRAISPGQAAVLYAGE----RVIGGG 351 Query: 382 IIS 384 I+ Sbjct: 352 TIA 354 >gi|159028008|emb|CAO87968.1| trmU [Microcystis aeruginosa PCC 7806] Length = 352 Score = 260 bits (665), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 157/367 (42%), Positives = 217/367 (59%), Gaps = 21/367 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV AA L GYDVIG+TL L K KG CC+ + + DA +C+ Sbjct: 3 KVVVGLSGGVDSSVAAAALHAQGYDVIGLTLWLM------KGKGQCCS-EGMVDAAFICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + V H++ D E F+ +I S Y AG TPLPC CN+ VKFS +L R+ L D Sbjct: 56 QLGVPHHIVDSRELFQKEIIDYLVSGYEAGITPLPCSQCNKAVKFSPMLHYARETLETDT 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R + R ++M R +D +DQSYFL+ TQ L FPLG+ K Sbjct: 116 IATGHYARIRF--SPENNRYQLM-RAVDKNKDQSYFLYDLTQDVLRGTLFPLGEQTKAET 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNGI 259 R +A+E GL ADK DSQD+C ++ + + ++ IA+ EGDIV L+G++LG+H+GI Sbjct: 173 RRIAQEFGLKTADKPDSQDLCLIE--AHGTMRSFLDKYIAVSEGDIVDLDGKVLGKHSGI 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQR+G+G+A EPL+VV LD +RVIVG RES + +NW+ + + Sbjct: 231 HHYTIGQRKGIGIAAAEPLYVVKLDPVMNRVIVGNRESAVSADCLVGRMNWV--SIAQPT 288 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + V+ RS PV V N+ V + F++ + + GQA V Y + VLG Sbjct: 289 TPIRAQVQVRYRSPAVPVNVIPLENNQ-VKLVFDEPQFSITPGQAAVIYEGEI----VLG 343 Query: 380 GGIISGS 386 GGIISG+ Sbjct: 344 GGIISGA 350 >gi|219669597|ref|YP_002460032.1| tRNA-specific 2-thiouridylase MnmA [Desulfitobacterium hafniense DCB-2] gi|219539857|gb|ACL21596.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfitobacterium hafniense DCB-2] Length = 370 Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 147/369 (39%), Positives = 206/369 (55%), Gaps = 15/369 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV MSGGVDSS+ AALLK +GY+VIG+TLQ S G CC+ + DARRV Sbjct: 8 KVVVGMSGGVDSSMAAALLKEEGYEVIGITLQTMPS-GGPDDVGGCCSITAIDDARRVAH 66 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + HYV ++ F VI F ++Y +GETP PC CNR V++ + L R LGAD L Sbjct: 67 QLGIPHYVLNFRTIFEENVIDYFTNAYLSGETPNPCTMCNRVVRWGEFLRKARALGADYL 126 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + + D R +M RP+D +DQ+Y L+ TQ QL FPL D KKE +R Sbjct: 127 ATGHYAK---ILQDPDSGRYLMSRPVDTWKDQTYMLYNLTQDQLKHTLFPLADYKKEHIR 183 Query: 202 DLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 ++A E GL ++ K DSQ+ICF+ Y ++ + G+ V G ILGRH G+I Sbjct: 184 EMAAERGLLRVSRKPDSQEICFIPDDDYVSFIRERSPDKIKPGNFVDRQGNILGRHQGLI 243 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 NYT+GQR+GLGV G+P+FV+ + + VI+G + + H + ++NW+ E + Sbjct: 244 NYTVGQRKGLGVTFGKPMFVLGFNVEGNEVILGEDQEVYAHTLLATDLNWIAITGLEGPL 303 Query: 321 VDGFKCFVKIRSSQDP-VPVFVQRNDDG-----VYVDFEKSEVGVASGQACVFYTSDSNE 374 K K ++ +P+ G V V+F + + GQA VFY D Sbjct: 304 TVQAKIRYKAPLAEAKIIPLKDSETLPGAIGPVVRVEFTTPQRAITPGQAVVFYQGD--- 360 Query: 375 ARVLGGGII 383 V+GGG I Sbjct: 361 -LVVGGGKI 368 >gi|291550046|emb|CBL26308.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ruminococcus torques L2-14] Length = 358 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 147/367 (40%), Positives = 215/367 (58%), Gaps = 19/367 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + + G CC V DARRV Sbjct: 5 KVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEENEVQEENGGCCGLSAVDDARRV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +I + +YV ++++ F+ VI F Y G TP PC+ CNR VK+ LL + +GAD Sbjct: 65 ASSIGIPYYVMNFKQEFQKNVIDYFTKEYLNGRTPNPCIACNRYVKWEALLQRSLSIGAD 124 Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R +L G R + R L +DQ+Y L+ TQ+QL P+G+ K+ Sbjct: 125 YIATGHYARIDKLSNG-----RYAIRRSATLAKDQTYALYNLTQEQLEHTLMPVGNYSKD 179 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257 +R++A ++GL +A+K DSQDICFV G Y ++ NA + +G+ V +G+ILG+H Sbjct: 180 QIREMAEKIGLQVANKPDSQDICFVPDGDYASFIEE-NADTPIRQGNFVTPDGKILGKHK 238 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GII+YT+GQR+GLG+A+G P FV+ + + V++G E H + E+N++ E Sbjct: 239 GIIHYTVGQRKGLGLALGYPAFVLEIRPETDEVVIGTYEESLTHTLRANELNFMS---VE 295 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 D + + + F KIR + V++ +D + F++ V GQA V Y + Sbjct: 296 D-LTEPMRVFAKIRYNHKGAWCTVEKTGEDEITCTFDEPIRAVTPGQAVVLYDGE----Y 350 Query: 377 VLGGGII 383 VLGGG I Sbjct: 351 VLGGGTI 357 >gi|331091036|ref|ZP_08339878.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium 2_1_46FAA] gi|330405258|gb|EGG84794.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium 2_1_46FAA] Length = 360 Score = 259 bits (663), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 141/367 (38%), Positives = 211/367 (57%), Gaps = 15/367 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ R + G CC V DARRV Sbjct: 5 KVVVGMSGGVDSSVAAHLLKEQGYDVIGVTMQIWQDEDRAIQEENGGCCGLSAVDDARRV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + +YV ++++ F+ VI F Y G TP PC+ CNR VK+ LL + +GAD Sbjct: 65 AGQLEIPYYVMNFKKEFKKEVIDYFIEEYRQGRTPNPCIACNRYVKWESLLKRSMDIGAD 124 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY +R+ ++G R + R L +DQ+Y L+ TQ QL P+G+ K+ Sbjct: 125 YIATGHY--ARIVKLENG--RYTLKRSATLAKDQTYALYNLTQNQLSHTLMPVGEYTKDE 180 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R +A ++ L +A+K DSQDICFV G Y ++ G+ V LNG ILG+H GI Sbjct: 181 IRQIAEKIHLQVANKPDSQDICFVPDGDYASFIEETTGERIQTGNFVDLNGNILGQHKGI 240 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 I+YT+GQR+GLG+++G P FV+ + ++ V++G E + + +N++ E Sbjct: 241 IHYTVGQRKGLGLSLGRPAFVLEIRPETNEVVIGTNEDAMSYTLRANHLNFMSISDLEGE 300 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + F KIR + +++ ++D V F++ + + GQA VFY ++ V+ Sbjct: 301 M----HVFAKIRYNHKGAWCTIKKTSEDEVLCTFDEPQRAITPGQAVVFY----DDEYVI 352 Query: 379 GGGIISG 385 GGG I G Sbjct: 353 GGGTIIG 359 >gi|114776442|ref|ZP_01451487.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mariprofundus ferrooxydans PV-1] gi|114553272|gb|EAU55670.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mariprofundus ferrooxydans PV-1] Length = 374 Score = 259 bits (663), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 156/368 (42%), Positives = 203/368 (55%), Gaps = 18/368 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKGSCCAGQDVYDAR 77 K +RV+ AMSGGVDSSV+A LLK G DVIGV L +++ SR R GSCC+ +D YDAR Sbjct: 20 KGVRVIAAMSGGVDSSVMAVLLKEAGVDVIGVFLNVWDYSRDEVNRHGSCCSLEDSYDAR 79 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV D I + Y D + FR VI PF Y G TP PC CNR VKF LL +L Sbjct: 80 RVADHIGIPFYAMDMRDEFRRDVIDPFIQDYETGRTPNPCERCNRFVKFGALLEAADKLE 139 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A +ATGHY+R R DD + + D +DQSYFL T + Q + FP+G ++K Sbjct: 140 AAYVATGHYVRRR----DDNDGIHLF-KGNDARKDQSYFLATTNRAQAERILFPVGGLEK 194 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRH 256 + R LA L ADK +SQDICF+ G +KR A EGDIV G+ILGRH Sbjct: 195 DDTRRLAHFYKLPTADKHESQDICFIPAGDRIAFLKREGAEAGFREGDIVDTTGRILGRH 254 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GI +YT+GQR+GLG+ G P VV LD ++RV V E + + + E W+ + Sbjct: 255 QGIAHYTLGQRKGLGLPDG-PWHVVALDGATARVTVAHPEDAMIGGVDVSEAVWIREPKS 313 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 +AV K+R P ++ D+ + V F + + A GQ FY D Sbjct: 314 GEAVT------AKVRYQMQPAACVLEHFDESLRVTFAQPQKPSAPGQVAAFYAGDE---- 363 Query: 377 VLGGGIIS 384 +LGGGI+S Sbjct: 364 LLGGGIVS 371 >gi|110802009|ref|YP_699068.1| tRNA-specific 2-thiouridylase MnmA [Clostridium perfringens SM101] gi|123047295|sp|Q0SS39|MNMA_CLOPS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|110682510|gb|ABG85880.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium perfringens SM101] Length = 359 Score = 259 bits (662), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 141/365 (38%), Positives = 211/365 (57%), Gaps = 15/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARRVC 80 +VV+ MSGGVDSSV A LLK GYDVIGVT+Q++ K +R+G CC+ V DARRV Sbjct: 5 KVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARRVA 64 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +++ YV ++ + F+ VI F Y G TP PC+ CN+ +KF +LL + +GAD Sbjct: 65 QKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + G R + R D +DQ+Y L+ TQ+QL P G+ K+ + Sbjct: 125 VATGHYAKIEERDG-----RFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKDKI 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+E+GLD+ +K DS++ICF+ + + G+ V G +LG+H GI+ Sbjct: 180 REIAKEIGLDVHNKKDSEEICFIPDNNHGRYICEAAPNKVRTGNFVDKYGNVLGKHKGIV 239 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQR+GLG+A+G P+FV ++ ++ V+VGP E + + ++IN++ ED + Sbjct: 240 YYTIGQRKGLGLALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISIDKLEDPM 299 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + KIR S P + ++G V V FE + + GQ+ VFY D V+G Sbjct: 300 ----EVEAKIRYSAKPAKATISPMENGRVKVSFEDKQRAITKGQSVVFYKDD----LVVG 351 Query: 380 GGIIS 384 GGII Sbjct: 352 GGIIE 356 >gi|147677391|ref|YP_001211606.1| tRNA-specific 2-thiouridylase MnmA [Pelotomaculum thermopropionicum SI] gi|205816885|sp|A5D3F0|MNMA_PELTS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|146273488|dbj|BAF59237.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Pelotomaculum thermopropionicum SI] Length = 365 Score = 259 bits (662), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 145/371 (39%), Positives = 220/371 (59%), Gaps = 15/371 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDA 76 + +VVVAMSGGVDSSV AALL G++VIG+T+Q++N + ++ KG +CC+ + DA Sbjct: 2 EKTKVVVAMSGGVDSSVTAALLLEQGFEVIGITMQIWNPGEEAESKGERTCCSLTAIDDA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV D + +SHYV ++ F VI F S Y G TP PC+ CNR VKF LL + Sbjct: 62 RRVADKLGISHYVLNFRSIFEEKVIDYFTSEYLRGRTPNPCIACNRYVKFEALLDRALSI 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GA+ +ATGHY R Y G+ G R + RP+D +DQ+Y L+ TQ+Q+ PLG+ Sbjct: 122 GAEYIATGHYARLG-YSGEYG--RYTVRRPVDRRKDQTYVLYGMTQRQIARTMMPLGNYT 178 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A + GL +A K++SQ+ICF+ Y ++ AGI G +++ G+++GRH Sbjct: 179 KGQVRKIAEDFGLPVAGKAESQEICFILDDDYRRFLREKAAGIK-PGPFLNMKGEVIGRH 237 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 NGI YT+GQRRGLG+A GE L+VV +D ++ + +GP E++ + ++N + L+ Sbjct: 238 NGIPFYTVGQRRGLGLAAGERLYVVKIDPENNAITLGPEEAVWGRSLIAADVNLI---LY 294 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375 E ++ + + ++R + P + +G V V F + + GQA VFY D Sbjct: 295 E-SLEEPLEVEAQVRYNARTSPATLVPLPEGRVGVHFHTPQRSITPGQAVVFYRGDY--- 350 Query: 376 RVLGGGIISGS 386 ++GG I + Sbjct: 351 -LIGGATIEST 360 >gi|291522307|emb|CBK80600.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coprococcus catus GD/7] Length = 368 Score = 259 bits (662), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 151/365 (41%), Positives = 201/365 (55%), Gaps = 15/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK+ GYDVIGVT+Q++ + G CC V DARRV Sbjct: 5 KVVVGMSGGVDSSVAAWLLKQQGYDVIGVTMQIWQEEEDEIVEENGGCCGLSAVDDARRV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + I + +YV ++ E FR VI F S Y G TP PC+ CNR VK+ LL LGAD Sbjct: 65 AERIGIPYYVMNFREVFREKVIDNFVSEYEKGRTPNPCIVCNRYVKWEALLEKALALGAD 124 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R V R I D +DQ+Y L+ Q QL P+G K Sbjct: 125 YIATGHYAR---IVHLPNGRYAIEKAAFD-RKDQTYALYNLNQHQLAHTLMPVGAYDKSE 180 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E+GL +A+K DSQDICFV G Y ++ EGD V NG++LG H GI Sbjct: 181 VRRIAGEIGLSVANKMDSQDICFVSDGNYQAFIEDYTGKKLPEGDFVDKNGKVLGHHRGI 240 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YTIGQR+GL +AMG P+FV ++ +++I+G + L +Y +N + ++ Sbjct: 241 GAYTIGQRKGLNLAMGHPVFVTGINPEENKIIIGENDELFQRALYASNVNLMSRASLDEP 300 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 V + KIR + P ++ DG +YV F++ + + GQA V Y D V Sbjct: 301 V----RLTAKIRYAHKAAPCIARQLPDGSLYVCFDEPQRAITPGQAVVLYDGD----LVA 352 Query: 379 GGGII 383 GGGII Sbjct: 353 GGGII 357 >gi|313905756|ref|ZP_07839115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium cellulosolvens 6] gi|313469362|gb|EFR64705.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium cellulosolvens 6] Length = 363 Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust. Identities = 149/368 (40%), Positives = 208/368 (56%), Gaps = 13/368 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDA 76 KD VVV MSGGVDSSV A LLK GY+VIGVT+Q++ + +G CC V DA Sbjct: 4 KDKTVVVGMSGGVDSSVAAYLLKEQGYNVIGVTMQIWQDESECRLENEGGCCGVTAVEDA 63 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV + + +YV +++E F+ VI F Y G TP PC+ CNR VK+ LL+ + + Sbjct: 64 RRVAGVLGIPYYVMNFKEEFQKNVIDYFVDEYLHGRTPNPCIACNRYVKWESLLTKSLAI 123 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R R D+G R + + ++DQ+Y L+ TQ QL P+GD + Sbjct: 124 GADYIATGHYARIRHL--DNG--RYAIANSVTAKKDQTYALYGLTQNQLAHTLMPVGDYE 179 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL +A KSDSQ+ICFV G Y ++R + + EG+ V +G++LGRH Sbjct: 180 KPKVREIAERAGLPVAHKSDSQEICFVPDGDYASFIERDSGIVMPEGNFVTKDGEVLGRH 239 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GI +YT+GQRRGL + MG +FV + ++ V+VG E + + +N++G G Sbjct: 240 RGITHYTVGQRRGLDLPMGRRVFVTEIRPETNEVVVGEAEDVWSETLKANRLNFMGIGDL 299 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 D F KIR + V+R +D + F+ V GQA VFY D Sbjct: 300 PLGEEDHF--LAKIRYNHAGTGCRVKRTGEDEITCVFDDPVRAVTPGQALVFYKDDY--- 354 Query: 376 RVLGGGII 383 V GGG+I Sbjct: 355 -VAGGGVI 361 >gi|154503928|ref|ZP_02040988.1| hypothetical protein RUMGNA_01754 [Ruminococcus gnavus ATCC 29149] gi|153795527|gb|EDN77947.1| hypothetical protein RUMGNA_01754 [Ruminococcus gnavus ATCC 29149] Length = 356 Score = 259 bits (661), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 146/367 (39%), Positives = 216/367 (58%), Gaps = 17/367 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + A + G CC V DARRV Sbjct: 3 KVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEEQAAQEENGGCCGLSAVDDARRV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + +YV ++++ F+ VI F Y G TP PC+ CNR VK+ LL + +GA+ Sbjct: 63 AAALEIPYYVMNFKKEFKENVIDYFVEEYQNGRTPNPCIACNRYVKWESLLQRSLSIGAE 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY +R+ ++G R + R L +DQ+Y L+ TQ+QL P+G K+ Sbjct: 123 YIATGHY--ARVVQLENG--RYTLRRSATLAKDQTYALYNLTQEQLKRTLMPVGKYTKDE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNG 258 VR +A ++ L IA+K DSQDICFV G Y ++ AG+ + EG+ V +G +LGRH G Sbjct: 179 VRAIAEKINLRIANKPDSQDICFVPDGDYAAYIEE-EAGVKVPEGNFVLTDGTVLGRHKG 237 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I +YT+GQR+GLG+A+G P FV+ + ++ V++G +E ++ R +N++ ED Sbjct: 238 ITHYTVGQRKGLGLALGYPAFVLEIRPETNEVVIGTKEESMTTQLRARNLNFMA---VED 294 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + F KIR + +++ +D V F++ + V GQA VFY + V Sbjct: 295 -LTEPLHVFTKIRYNHKGAWCTIEKTGEDEVLCTFDEPQRAVTPGQAVVFYDGEY----V 349 Query: 378 LGGGIIS 384 LGGG I Sbjct: 350 LGGGTIQ 356 >gi|167759055|ref|ZP_02431182.1| hypothetical protein CLOSCI_01402 [Clostridium scindens ATCC 35704] gi|167663462|gb|EDS07592.1| hypothetical protein CLOSCI_01402 [Clostridium scindens ATCC 35704] Length = 361 Score = 259 bits (661), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 147/370 (39%), Positives = 217/370 (58%), Gaps = 17/370 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ R + +G CC V DARRV Sbjct: 5 KVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEERIVEEEQGGCCGLSAVDDARRV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 ++ + +YV ++++ F+ VI F Y G TP PC+ CNR VK+ LL + ++GAD Sbjct: 65 AASLGIPYYVMNFKQEFKTYVIDYFMDEYLHGRTPNPCIACNRYVKWESLLKRSMEIGAD 124 Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R RL G R + +DQ+Y L++ TQ+QL P+G+ K+ Sbjct: 125 YIATGHYARIERL-----GNGRCSLRTSAASAKDQTYALYSLTQEQLKRTLMPVGEYTKD 179 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R LA ++GL++ADK DSQDICFV G Y ++ + L G+ V +G ++GRH G Sbjct: 180 EIRKLAGKIGLNVADKPDSQDICFVPDGDYASYIEANSGARILPGNFVLSDGTVVGRHKG 239 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I++YT+GQR+GLG+++G P+FV+ + ++ +IVG E + IN++ ED Sbjct: 240 IVHYTVGQRKGLGLSLGHPVFVLDIRPETNEIIVGTNEESLTCHVRADRINFMA---IED 296 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + D + + KIR + V++ +D + FE+ + VA GQA V Y + V Sbjct: 297 -LADKKRVWAKIRYNHRGAWCTVEKTGEDEILCIFEEPQRAVAPGQAVVLYDGEY----V 351 Query: 378 LGGGIISGSK 387 LGGG I G + Sbjct: 352 LGGGTIIGDE 361 >gi|226322606|ref|ZP_03798124.1| hypothetical protein COPCOM_00378 [Coprococcus comes ATCC 27758] gi|225208943|gb|EEG91297.1| hypothetical protein COPCOM_00378 [Coprococcus comes ATCC 27758] Length = 359 Score = 258 bits (660), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 150/369 (40%), Positives = 217/369 (58%), Gaps = 19/369 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ K + G CC V DAR+V Sbjct: 5 KVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEESKIQEENGGCCGLSAVDDARKV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 I + +YV ++++ F+ VI F Y G TP PC+ CNR VK+ LL+ + ++GAD Sbjct: 65 AAQIGIPYYVMNFKKDFQEKVIDYFVDEYLHGRTPNPCIACNRYVKWESLLTRSMEIGAD 124 Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R +L G R + +DQ+Y L+ TQ QL P+G+ +K+ Sbjct: 125 YIATGHYARVEQLPNG-----RYAIRHSATWSKDQTYALYNLTQDQLRRTLMPVGEYEKD 179 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A+E+GL IA+K DSQDICFV Y ++ + EG+ V +G+ILGRH G Sbjct: 180 QIREIAKEIGLQIANKPDSQDICFVSDDDYASFIEEESDQKIPEGNFVTPDGKILGRHKG 239 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 II+YTIGQR+GLG+++G P FV+ + +++ V++G E L R+ ++N++ ED Sbjct: 240 IIHYTIGQRKGLGLSLGYPAFVLEIRPDTNEVVIGTNEDLMTTRVRANKLNFM---TVED 296 Query: 319 AVVDG-FKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 ++G + F KIR + V++ +D + FE + V GQA V Y D Sbjct: 297 --LEGEMRVFAKIRYNHKGDWCTVRKTGEDEIECIFETPQRAVTPGQALVLYDGDY---- 350 Query: 377 VLGGGIISG 385 VLGGG I G Sbjct: 351 VLGGGTILG 359 >gi|269217070|ref|ZP_06160924.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Slackia exigua ATCC 700122] gi|269129207|gb|EEZ60292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Slackia exigua ATCC 700122] Length = 362 Score = 258 bits (660), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 149/373 (39%), Positives = 210/373 (56%), Gaps = 23/373 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS-------RKASKRKGSCCAGQDVY 74 RV+V MSGGVDSSV A +LK+ GY+VIG T++L+ S R + R +CC+ DV Sbjct: 4 RVMVGMSGGVDSSVTAYVLKQQGYEVIGATMRLHGSDLPGRDARSCASR--TCCSLDDVE 61 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ V + ++H D+ +RF +AVI PF +Y TP PC+DCNR +KF +L Sbjct: 62 DAKSVARRLGIAHRTIDFTDRFEDAVIKPFVRAYETARTPNPCIDCNRRLKFGSMLERAL 121 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LG D +ATGHY + + GD R + R D +DQSY L++ TQ QL PLG Sbjct: 122 DLGCDYVATGHYAQI-VRRGD----RFALVRGADASKDQSYVLYSLTQYQLAHTLLPLGG 176 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 M+K VR +A E G ADK +SQDICF+ G Y ++R + G+I G ++G Sbjct: 177 MRKSEVRAIAAEQGFINADKPESQDICFIPDGDYVGFLERYSGHTPQPGEIRDEAGAVIG 236 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 RH+GI ++T+GQR+G+G+A PL+VV D ++VGP++SL + NW+ D Sbjct: 237 RHSGIESFTVGQRKGIGIAASGPLYVVAKDARDHALVVGPKDSLLSDGCVADDWNWVADP 296 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 ED + F+ VK Q P P V+R DG V + + A GQA V Y D Sbjct: 297 --ED--LASFEVMVKTHYRQTPHPARVERRQDGTVRIVYASPARLAAPGQAVVVYQGDE- 351 Query: 374 EARVLGGGIISGS 386 V+GGG ++ + Sbjct: 352 ---VIGGGTVAST 361 >gi|225026476|ref|ZP_03715668.1| hypothetical protein EUBHAL_00725 [Eubacterium hallii DSM 3353] gi|224956215|gb|EEG37424.1| hypothetical protein EUBHAL_00725 [Eubacterium hallii DSM 3353] Length = 354 Score = 258 bits (658), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 140/364 (38%), Positives = 207/364 (56%), Gaps = 17/364 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80 + ++AMSGGVDSSV A L+K GYD IGVT++LY N R+ +CC+ D+ DAR VC Sbjct: 4 KALIAMSGGVDSSVAAYLMKEAGYDCIGVTMKLYDNEDIGMAREKTCCSLSDIEDARSVC 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + +YVF++++ F+ VI F S Y G TP PC++CNR +KF L + L DV Sbjct: 64 VKLGIPYYVFNFKDDFKEKVIDNFISCYQNGMTPNPCIECNRHLKFEHLYKRAKVLHCDV 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 + TGHY + + D + ++ + +D +DQSY L++ TQ+QL + FPLGD K + Sbjct: 124 IVTGHYAK----ITHDEQGYHLL-KGVDDSKDQSYVLYSLTQEQLANTCFPLGDYSKTEI 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E G A K DSQDICF+ G Y +++ + GD V+ G+++GRH G Sbjct: 179 RKIAEEQGFFNAHKHDSQDICFIPDGDYMSFIEKTTGKKSEPGDFVNQEGEVVGRHKGYY 238 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQR+GLG++ +P +V + ++VIVG E L + + NW+ + L ED V Sbjct: 239 GYTIGQRKGLGISAPKPYYVTEIRPEENKVIVGSNEDLFKTDLIANDFNWI-ENLAEDEV 297 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 +IR Q ++N DG V + F + + + GQA V Y + V+G Sbjct: 298 AKA-----RIRYHQTEKEATARKNSDGTVDIHFLEPQRAITKGQAVVLYRDN----HVVG 348 Query: 380 GGII 383 GG I Sbjct: 349 GGTI 352 >gi|227872028|ref|ZP_03990409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oribacterium sinus F0268] gi|227842120|gb|EEJ52369.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oribacterium sinus F0268] Length = 362 Score = 258 bits (658), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 142/371 (38%), Positives = 212/371 (57%), Gaps = 16/371 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGSCCAGQDVYDARRVC 80 + ++AMSGGVDSSV AAL++ GYD IG+T++LY+S R +CC +DV DAR+V Sbjct: 3 KALIAMSGGVDSSVAAALMQEKGYDCIGITMKLYDSETGQACRSRTCCTLEDVEDARQVA 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 T+++ YV ++++ F+ VI+PF +Y G TP PC+ CNR +K L +L Sbjct: 63 STLSMPFYVLNFKDDFQKKVILPFVETYENGGTPNPCIRCNRFMKHDKLYQRAEELSCSY 122 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199 + TGHY R D+ R ++ + D ++DQSY L+ +Q+QL FPLG+ KE Sbjct: 123 IVTGHYARIE---KDESSGRYLLKKAKDEKKDQSYVLYFLSQEQLAHTLFPLGEYSSKEE 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A + G +DK DSQDICFV G Y D +++ GD V NG+ LG H G Sbjct: 180 VREIADKYGFINSDKPDSQDICFVTNGDYGDFLEKFRGKPYPSGDFVDENGKKLGEHRGT 239 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 + YTIGQR+GLG+++ +P++V + ++VI+ +E + + + NW+ ED Sbjct: 240 VRYTIGQRKGLGLSLKKPMYVSGKNIEKNQVILSDKEGIYFEGLLANDFNWISLPPTEDM 299 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 V+ K R + VP V ++G V++ F + E V GQA V Y D VL Sbjct: 300 AVE-----AKTRYNGKAVPAIVSVRENGDVFLRFPEKERAVTKGQAVVLYDGD----LVL 350 Query: 379 GGG-IISGSKR 388 GGG I+ G K+ Sbjct: 351 GGGTIVEGYKK 361 >gi|83590486|ref|YP_430495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Moorella thermoacetica ATCC 39073] gi|123524262|sp|Q2RHY7|MNMA_MOOTA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|83573400|gb|ABC19952.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Moorella thermoacetica ATCC 39073] Length = 357 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 149/363 (41%), Positives = 210/363 (57%), Gaps = 13/363 (3%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCDT 82 +VAMSGGVDSS AALLK GY+VIGVTL L+ + CC+ + V DARRV + Sbjct: 1 MVAMSGGVDSSTAAALLKEAGYEVIGVTLALWPEDTPPPPGETGCCSLKAVDDARRVANI 60 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 +++ +YV ++ + F VI F +SY GETP PC+ CNR +KF LL+ R LG D +A Sbjct: 61 LDIPYYVLNFRDLFEREVIDYFIASYLEGETPNPCIACNRRIKFGALLAKARALGIDYIA 120 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R R Y D K R ++ R D +DQSY L+ TQ+QL PLGD K VR+ Sbjct: 121 TGHYAR-RWY--DKEKGRYLLARGRDAGKDQSYALYTFTQEQLAHTLLPLGDYTKVEVRE 177 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A GL +A K++SQ+ICFV +G Y D ++ G I+ G++LG+H G+ Y Sbjct: 178 IAARYGLPVARKAESQEICFVTEGDYRDYIQSRAREKIKPGPILDTRGRVLGQHRGLPFY 237 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A+G+P FVV LD + VIVG +E LE +Y R+ N++ G Sbjct: 238 TIGQRKGLGLALGKPCFVVALDPERNAVIVGDKEDLERRVLYARDNNYILWGELPGKA-- 295 Query: 323 GFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + +IR + + + ++F++ + + GQA V+Y D V+GGG Sbjct: 296 --RVTARIRYRAPEAAATWHPLAGGRARLEFDEPQRAITPGQAVVYYQGDL----VVGGG 349 Query: 382 IIS 384 I Sbjct: 350 TIE 352 >gi|160931216|ref|ZP_02078618.1| hypothetical protein CLOLEP_00053 [Clostridium leptum DSM 753] gi|156869771|gb|EDO63143.1| hypothetical protein CLOLEP_00053 [Clostridium leptum DSM 753] Length = 357 Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 147/364 (40%), Positives = 201/364 (55%), Gaps = 15/364 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80 +V++ MSGGVDSSV A LL + GYDV GVT++L + A + G CC+ D+ DARRV Sbjct: 4 KVMLGMSGGVDSSVAALLLLQQGYDVTGVTMKLRPDQYMAESQSGGCCSLDDIDDARRVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + H V ++ + F VI FAS Y AG TP PC+ CN VKF LL L D Sbjct: 64 YRLGIEHLVLNFTQVFSEKVIDYFASEYLAGRTPNPCIACNAHVKFDALLRKALSLEYDY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + + D+G R + + +DQSY L+ TQ QL PL M+K Sbjct: 124 VATGHY--AVITQNDEG---RWLLKKAPCSKDQSYVLYHLTQHQLAHTLMPLAGMEKSEA 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R+LARE GL +A K DSQ+ICFVQ Y ++R G+ + G +LG H GI Sbjct: 179 RELAREAGLPVAHKPDSQEICFVQDNDYASFIRRYTGKEPPPGNFIDQAGNVLGTHKGIT 238 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +YTIGQR+GLG++ G+P+FV +D S+ V +G S + ++N + E + Sbjct: 239 HYTIGQRKGLGISFGKPMFVTKIDPISNTVTLGENGSQYASSLIAGKVNLISADTLEAPI 298 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 VK+R P P + D+G + VDF++ + V GQA VFY D VLG Sbjct: 299 ----SAQVKVRYQAPPAPARLTPLDNGKIRVDFQEPQRSVTPGQAAVFYDGD----LVLG 350 Query: 380 GGII 383 GGII Sbjct: 351 GGII 354 >gi|260438131|ref|ZP_05791947.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Butyrivibrio crossotus DSM 2876] gi|292809456|gb|EFF68661.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Butyrivibrio crossotus DSM 2876] Length = 357 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 149/366 (40%), Positives = 204/366 (55%), Gaps = 16/366 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A +LK GYDVIGVT+Q++ G CC V DARRV Sbjct: 4 KVVVGMSGGVDSSVAALILKEQGYDVIGVTMQIWQDEDYCDMSENGGCCGLSAVDDARRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +TI + +YV +++E F+ VI F + Y G TP PC+ CNR VK+ LL +GAD Sbjct: 64 AETIGIPYYVMNFKEEFKKTVIDYFVAEYLRGRTPNPCIACNRYVKWEALLHRCLGIGAD 123 Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY +L G R + + L +DQSY L+ TQ++L FP+ M+K+ Sbjct: 124 YIATGHYGNIEKLPNG-----RFAVTKSASLNKDQSYVLYNLTQEELSHTLFPISTMEKD 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A GL +A K DSQDICF++ G Y ++ + GD V G +LGRH G Sbjct: 179 EVRKIAERAGLPVAHKKDSQDICFIKDGDYASFIEEQTGVKSGPGDFVDSKGNVLGRHAG 238 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 II+YT+GQR+GLG+A GEP +V+ LD ++V++G + L + +IN++ + Sbjct: 239 IIHYTVGQRKGLGIAFGEPRYVIRLDVPKNQVVLGTLDELMTKEVLFDDINYMSVSDINE 298 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARV 377 V K K+R S VP + DGV FE+ GQA VFY + V Sbjct: 299 PV----KVTGKVRYSAKDVPCTLYPAKDGVMKAVFEEPVRAATPGQAAVFY---KDGCIV 351 Query: 378 LGGGII 383 GG II Sbjct: 352 CGGSII 357 >gi|317498544|ref|ZP_07956838.1| tRNA methyl transferase [Lachnospiraceae bacterium 5_1_63FAA] gi|316894237|gb|EFV16425.1| tRNA methyl transferase [Lachnospiraceae bacterium 5_1_63FAA] Length = 363 Score = 257 bits (657), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 149/365 (40%), Positives = 210/365 (57%), Gaps = 16/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK+ GYDVIGVT+Q++ + G CC V DARRV Sbjct: 4 KVVVGMSGGVDSSVAAYLLKKQGYDVIGVTMQIWQEEDEFVQEENGGCCGLSAVDDARRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 I + HYV ++ + F++ VI F Y TP PC+ CNR VK+ LL +GAD Sbjct: 64 AQMIGIPHYVMNFRKDFKDKVIDYFCEEYLNARTPNPCIACNRYVKWESLLKRCLDIGAD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY S++ D+G R + C ++DQ+Y L+ TQ QL P+G K+ Sbjct: 124 YIATGHY--SQITKLDNG-RYALKCSKTQ-KKDQTYALYNLTQNQLSKTLMPIGAYTKDE 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E+GL +A+K DSQDICFV Y + ++ +G+ V G +LG H GI Sbjct: 180 VRQIAEEIGLLVANKPDSQDICFVDD-NYGEFIEETTGTKIPKGNFVDPEGNVLGEHKGI 238 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 I YT+GQRRGLG+++ +P +V+ +DK+++ V+VG ++ L + +Y ++N + FE Sbjct: 239 IYYTVGQRRGLGLSLKKPGYVIKVDKDTNEVVVGDKQDLFANVLYGNKVNCMSVPEFE-- 296 Query: 320 VVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 DG K KIR + VP V +D V V F++ + + GQA VFY D V Sbjct: 297 --DGMKLMAKIRYNSPEVPCRVYMTGEDEVRVVFDEPQRAITPGQAVVFYDGDI----VA 350 Query: 379 GGGII 383 GG I Sbjct: 351 GGATI 355 >gi|167765590|ref|ZP_02437654.1| hypothetical protein CLOSS21_00084 [Clostridium sp. SS2/1] gi|167712775|gb|EDS23354.1| hypothetical protein CLOSS21_00084 [Clostridium sp. SS2/1] Length = 363 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 149/365 (40%), Positives = 210/365 (57%), Gaps = 16/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK+ GYDVIGVT+Q++ + G CC V DARRV Sbjct: 4 KVVVGMSGGVDSSVAAYLLKKQGYDVIGVTMQIWQEEDEFVQEENGGCCGLSAVDDARRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 I + HYV ++ + F++ VI F Y TP PC+ CNR VK+ LL +GAD Sbjct: 64 AQMIGIPHYVMNFRKDFKDKVIDYFCEEYLNARTPNPCIACNRYVKWESLLKRCLDIGAD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY S++ D+G R + C ++DQ+Y L+ TQ QL P+G K+ Sbjct: 124 YIATGHY--SQITKLDNG-RYALKCSKTQ-KKDQTYALYNLTQNQLSKTLMPIGAYTKDE 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E+GL +A+K DSQDICFV Y + ++ +G+ V G +LG H GI Sbjct: 180 VRQIAEEIGLLVANKPDSQDICFVDD-NYGEFIEETTGTKIPKGNFVDPEGNVLGEHKGI 238 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 I YT+GQRRGLG+++ +P +V+ +DK+++ V+VG ++ L + +Y ++N + FE Sbjct: 239 IYYTVGQRRGLGLSLKKPGYVIKVDKDTNEVVVGDKQDLFANVLYGNKVNCMSVPEFE-- 296 Query: 320 VVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 DG K KIR + VP V +D V V F++ + + GQA VFY D V Sbjct: 297 --DGMKLMAKIRYNSPEVPCRVYMTGEDEVRVVFDEPQRAITPGQAVVFYDGDI----VA 350 Query: 379 GGGII 383 GG I Sbjct: 351 GGATI 355 >gi|27262188|gb|AAN87375.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Heliobacillus mobilis] Length = 376 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 148/365 (40%), Positives = 205/365 (56%), Gaps = 16/365 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVVAMSGGVDSSV AALL GY+VIGVTLQ++ +G CC+ V DARRV T Sbjct: 5 VVVAMSGGVDSSVTAALLLEKGYNVIGVTLQIWPKDAPEGAEGGCCSLSAVEDARRVAFT 64 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + HYV ++ + F VI F Y AG+TP PC+ CNR +KF LL + LGAD +A Sbjct: 65 LGIPHYVMNFRDYFEEEVINYFGQEYLAGQTPNPCIRCNRVIKFEGLLQKSLALGADKVA 124 Query: 143 TGHYIRSRLYVGDDGKRRRI-MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 TGHY R + D +R+R + + D ++DQSY LF TQ+QL FPLG K +R Sbjct: 125 TGHYAR----IEYDAERQRYRLGQAKDAKKDQSYVLFNMTQEQLSRTMFPLGGFTKPEIR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHLNGQILGRHNGII 260 ++AR L +A K DSQ+ICF+ Y ++ R G V +G ++G H G+ Sbjct: 181 EMARAYNLAVASKPDSQEICFIPDNDYRRFLQERYPENSFAPGPFVDTSGNVIGTHQGLP 240 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YT+GQR+GLG A G P +VV LD + VI+G E + R+ ++NW+ + + Sbjct: 241 FYTVGQRKGLGQAFGYPAYVVGLDVARNAVIIGRDEDVFSRRLLAGDLNWIE----VNRL 296 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + KIR S ++ +G V V+FE+ + + GQA VFY D ++ Sbjct: 297 TAPMEVQAKIRYSALKAKAIIRPVGEGDQVIVEFEEKQRAITPGQAVVFYQGDW----IV 352 Query: 379 GGGII 383 GGG I Sbjct: 353 GGGTI 357 >gi|331085021|ref|ZP_08334108.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408721|gb|EGG88186.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium 9_1_43BFAA] Length = 357 Score = 256 bits (655), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 142/365 (38%), Positives = 212/365 (58%), Gaps = 15/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ R + G CC V DARRV Sbjct: 4 KVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDRAVEEENGGCCGLSAVDDARRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + +YV ++++ F+ VI F Y G TP PC+ CNR VK+ LL + +GAD Sbjct: 64 AAALEIPYYVMNFKKEFKEKVIDYFVQEYLHGRTPNPCIACNRYVKWESLLKRSMDIGAD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R V + R + C L +DQ+Y L+ TQ+QL P+G+ K+ Sbjct: 124 YIATGHYARV---VQLENGRYTLKCSAT-LAKDQTYALYNLTQEQLKRTLMPVGEYTKDQ 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A ++ L IA+K DSQDICFV G Y ++ A EG+ V L+G++LGRH GI Sbjct: 180 VREIAEKINLRIANKPDSQDICFVPDGDYASFIEEEAAVKIPEGNFVDLDGRVLGRHKGI 239 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YT+GQR+GLG+++G P FV+ + ++ +++G E + + ++N++ ED Sbjct: 240 THYTVGQRKGLGLSLGHPAFVLEIRPETNEIVIGSNEDSMSYTLRANQLNFMS---IED- 295 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + + KIR + ++++ D V FE+ + + GQA VFY + V+ Sbjct: 296 LTGEMRVWTKIRYNHKGAWCTIRKSGKDEVTCTFEEPQRAITPGQAVVFYDGEY----VV 351 Query: 379 GGGII 383 GGG I Sbjct: 352 GGGTI 356 >gi|238922133|ref|YP_002935647.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium eligens ATCC 27750] gi|238873805|gb|ACR73513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium eligens ATCC 27750] Length = 355 Score = 256 bits (655), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 137/363 (37%), Positives = 210/363 (57%), Gaps = 13/363 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + CC V DARRV Sbjct: 4 KVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDDATEAAENGCCGISAVDDARRVAG 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +YV +++ F+ VI F Y G TP PC+ CNR VK+ LL + ++GAD + Sbjct: 64 QLDIPYYVMNFKNEFKCNVIDYFVDEYKKGRTPNPCIACNRYVKWESLLKRSLEIGADYI 123 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +R++ +G R +C + +DQ+Y L+ TQ+QL P+GD K+ VR Sbjct: 124 ATGHY--ARIHQLPNG--RYTICNSVTARKDQTYALYNLTQEQLSHTLLPIGDYTKDQVR 179 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++G+ +A K DS +ICF+ Y +KR ++ G+ + +NG ++GRH GII+ Sbjct: 180 EIASKIGITVAKKPDSMEICFIPDNDYAGFIKRETGYTSVPGNFIDVNGNVIGRHQGIIH 239 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YT+GQR+GLG+A+G+P FVV + ++ V++G + ++Y +N++ E + Sbjct: 240 YTVGQRKGLGLALGKPAFVVAIRPETNEVVIGDNSDVFSPKLYANNLNFMSIPSLEGEM- 298 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 + KIR S + ++ D+ F++ V GQA V Y D+ VLGG Sbjct: 299 ---RAKGKIRYSHEGAMCTIRMFDENTLECTFDEPVRAVTPGQALVLYDGDN----VLGG 351 Query: 381 GII 383 G I Sbjct: 352 GTI 354 >gi|302670955|ref|YP_003830915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU [Butyrivibrio proteoclasticus B316] gi|302395428|gb|ADL34333.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU [Butyrivibrio proteoclasticus B316] Length = 373 Score = 256 bits (655), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 144/363 (39%), Positives = 202/363 (55%), Gaps = 15/363 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCD 81 ++AMSGGVDSSV AAL + GY+ IG T++LY N G+CC+ +D DAR VCD Sbjct: 19 ALIAMSGGVDSSVAAALTLKKGYNCIGCTMRLYENDMVGLDLLGTCCSIEDTKDARSVCD 78 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + ++ YE FR+ VI PF SY GETP PC+ CN+ +KF L R+LG D + Sbjct: 79 KLGIDYNIYHYEAEFRDKVIEPFVCSYERGETPNPCIRCNKYLKFDSLYKRARELGCDYI 138 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 TGHY R G + + DL +DQSY L+ +++QL FPLG+ K VR Sbjct: 139 VTGHYARIEERDG-----HFYLLKAKDLNKDQSYVLYDLSEEQLRHTLFPLGEFTKPEVR 193 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A E G + KS+SQDICFV G Y ++ R +GD V +G +LG H+GIIN Sbjct: 194 AIAEENGFVTSHKSESQDICFVPDGDYAGMIHRYRGKDYPKGDFVDKDGNVLGTHDGIIN 253 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQRRGLG+ L+V LD +++VI+ L + +R+ +W+ Sbjct: 254 YTIGQRRGLGIPADRRLYVTKLDVENNKVILADNIDLFKREMIIRDFHWITGS----EPT 309 Query: 322 DGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 + F+C KIR P V + V F++++ + +GQ+ V Y D VLGG Sbjct: 310 NEFRCQAKIRYKHKEQPASVLPLGEKRARVVFDEAQRAITAGQSAVLYDGDI----VLGG 365 Query: 381 GII 383 GII Sbjct: 366 GII 368 >gi|291556233|emb|CBL33350.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium siraeum V10Sc8a] Length = 358 Score = 256 bits (654), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 149/370 (40%), Positives = 212/370 (57%), Gaps = 23/370 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++ +AMSGGVDSSV LLK D YDV G TL+L++SR + G C + D+ DA+ + Sbjct: 3 KLAIAMSGGVDSSVALVLLK-DKYDVSGYTLKLHDSR-GTDDSGLCGSASDIEDAKAIAA 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 V HY+ D E F V F SY +G TP PCV+CN T+KF LL ++ G + + Sbjct: 61 KFGVPHYLLDMRELFSKTVQKSFTESYLSGRTPNPCVECNETIKFGALLDAVKKQGINHI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLE-----RDQSYFLFATTQQQLCDLRFPLGDMK 196 ATGHY+RS D+ R ++ + ++ + +DQSY L+ +QQQL FPLG+M Sbjct: 121 ATGHYVRSCY---DEKSGRWLLKKAINADGTSNAKDQSYVLYRLSQQQLAASVFPLGEMT 177 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ +R +A + GL +DK DSQDICFV G Y ++R +GD + NG ++GRH Sbjct: 178 KDEIRHIAADSGLINSDKPDSQDICFVPDGDYAGFIERYTGNTYPDGDFLDENGNVIGRH 237 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G+I YTIGQRRG+G G+P++V+ + +++ V +G E L +Y +NW+ F Sbjct: 238 KGVIFYTIGQRRGIGTGFGKPMYVIGKNADNNTVTLGSNELLFTDTLYADNLNWIA---F 294 Query: 317 EDAVVDGFKCFVKI--RSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 E + FKC K R ++ P V+ Q RN V V F++ V GQ VFY D Sbjct: 295 EYPESE-FKCKAKTRYRQTEQPCTVYPQGRNT--VRVVFDEKIRAVTPGQHVVFYDGDI- 350 Query: 374 EARVLGGGII 383 VLGGG+I Sbjct: 351 ---VLGGGVI 357 >gi|326390151|ref|ZP_08211712.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter ethanolicus JW 200] gi|325993799|gb|EGD52230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter ethanolicus JW 200] Length = 364 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 143/370 (38%), Positives = 215/370 (58%), Gaps = 14/370 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDARRV 79 RV + MSGGVDSSV A LLK++G+DVIG+T++++ + KA SCC+ + DA++V Sbjct: 6 RVAIGMSGGVDSSVAAYLLKKEGFDVIGLTMKVWVDHEAKAFDSDKSCCSLRATQDAKKV 65 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + V HY D+ E F + ++ F + Y G TP PCV CNR +KF +LL +LGA Sbjct: 66 AEMLGVPHYTVDFSEVFYDKIVNYFINEYLKGRTPNPCVLCNRQIKFGELLEKAFELGAY 125 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R D+ +R ++ + +D +DQSY L+ TQ+QL FPLG+ KKE Sbjct: 126 YIATGHYVRKDY---DEKTKRYLLKKGIDSSKDQSYVLYRLTQKQLEHALFPLGNYKKEE 182 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R LA E+ L +A K +SQ+ICF+ Y +KR G+ ++G+ LG H GI Sbjct: 183 IRALAEELKLPVAKKPESQEICFIPDNDYSGFIKRQVKDEIKPGEFRDVHGKFLGYHKGI 242 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 I+YTIGQRRGLG++ PL+VV +D ++ V+VG +E + + N++ + Sbjct: 243 IHYTIGQRRGLGLSSDRPLYVVDIDVKNNVVVVGHQEDVWGEELISSNNNFISI----EK 298 Query: 320 VVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + K KIR ++++ + +D V V F K + + GQ+ VFY D V+ Sbjct: 299 LKREMKVTAKIRYTAKEEEAIIKPYEEDKVLVKFLKPQRAITPGQSVVFYDKDV----VV 354 Query: 379 GGGIISGSKR 388 GGGII R Sbjct: 355 GGGIIEKKVR 364 >gi|168218238|ref|ZP_02643863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium perfringens NCTC 8239] gi|182379744|gb|EDT77223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium perfringens NCTC 8239] Length = 359 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 140/365 (38%), Positives = 210/365 (57%), Gaps = 15/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARRVC 80 +VV+ MSGGVDSSV A LLK GYDVIGVT+Q++ K +R+G CC+ V DARRV Sbjct: 5 KVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARRVA 64 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +++ YV ++ + F+ VI F Y G TP PC+ CN+ +KF +LL + +GAD Sbjct: 65 QKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + G R + R D +DQ+Y L+ TQ+QL P G+ K+ + Sbjct: 125 VATGHYAKIEERDG-----RFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKDKI 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+E+GLD+ +K DS++ICF+ + + G+ V G +LG+H GI+ Sbjct: 180 REIAKEIGLDVHNKKDSEEICFIPDNNHGRYICEAAPNKVRPGNFVDKYGNVLGKHKGIV 239 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQR+GLG+A+G P+FV ++ ++ V+VGP E + + ++IN++ E + Sbjct: 240 YYTIGQRKGLGLALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISIDKLEGPM 299 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + KIR S P + ++G V V FE + + GQ+ VFY D V+G Sbjct: 300 ----EVEAKIRYSARPAKATISPMENGKVKVSFEDKQRAITKGQSVVFYKDD----LVVG 351 Query: 380 GGIIS 384 GGII Sbjct: 352 GGIIE 356 >gi|187933232|ref|YP_001885369.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum B str. Eklund 17B] gi|205813703|sp|B2THM7|MNMA_CLOBB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|187721385|gb|ACD22606.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum B str. Eklund 17B] Length = 361 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 138/367 (37%), Positives = 217/367 (59%), Gaps = 17/367 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS-RKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LLK GY+VIG T+Q++ ++ +R+G CC+ V DARRVC Sbjct: 7 KVLVGMSGGVDSSVAAYLLKEQGYEVIGATMQIWQEDKEVEEREGGCCSLSAVEDARRVC 66 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D +++ YV ++ + F+ VI PF Y G TP PC++CN+ +KF +LL + +G D Sbjct: 67 DKLDIPFYVLNFRDSFKKKVIEPFIQEYIDGRTPNPCIECNKHLKFDELLRKAQGIGVDY 126 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY +++ DD R ++ R D +DQ+Y L+ TQ QL P G+ K+ + Sbjct: 127 IATGHY--AKIDKKDD---RYMLIRSDDDRKDQTYALYNFTQDQLAHTLMPCGEYTKDRI 181 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+E+GL + +K DS++ICF+ + + G G+ V +G ILG+H GI+ Sbjct: 182 REIAKEIGLAVHNKKDSEEICFISDNDHGKYILNAKPGAVKSGNFVDKSGNILGKHKGIV 241 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDA 319 YTIGQR+GLG+++G P+FV ++ ++ V++G E + + ++N++ D L ++ Sbjct: 242 YYTIGQRKGLGLSVGRPVFVTDINPKTNEVVIGAEEDIFKTELIAGDLNFITFDKLEKEI 301 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 V+ KIR S P + DG V V F + + + GQ+ VFY N V+ Sbjct: 302 EVEA-----KIRYSARPGKATIVPLKDGRVKVVFNEKQRAITKGQSVVFY----NGNIVI 352 Query: 379 GGGIISG 385 GGG+I Sbjct: 353 GGGVIEA 359 >gi|325661222|ref|ZP_08149849.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium 4_1_37FAA] gi|325472729|gb|EGC75940.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium 4_1_37FAA] Length = 357 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 142/365 (38%), Positives = 212/365 (58%), Gaps = 15/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ R + G CC V DARRV Sbjct: 4 KVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDRAVEEENGGCCGLSAVDDARRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + +YV ++++ F+ VI F Y G TP PC+ CNR VK+ LL + +GAD Sbjct: 64 AAALEIPYYVMNFKKEFKEKVIDYFVQEYLHGRTPNPCIACNRYVKWESLLKRSMDIGAD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R V + R + C L +DQ+Y L+ TQ+QL P+G+ K+ Sbjct: 124 YIATGHYARV---VQLENGRYTLKCSAT-LAKDQTYALYNLTQEQLKRTLMPVGEYTKDQ 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A ++ L IA+K DSQDICFV G Y ++ A EG+ V L+G++LGRH GI Sbjct: 180 VREIAEKINLRIANKPDSQDICFVPDGDYASFIEEEAAVKIPEGNFVDLDGRVLGRHKGI 239 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YT+GQR+GLG+++G P FV+ + ++ +++G E + + ++N++ ED Sbjct: 240 THYTVGQRKGLGLSLGHPAFVLEIRPETNEIVIGSNEDSLSYTLKANQLNFMS---IED- 295 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + + KIR + ++++ D V FE+ + + GQA VFY + V+ Sbjct: 296 LTGEMRVWTKIRYNHKGAWGTIRKSGKDEVTCTFEEPQRAITPGQAVVFYDGEY----VV 351 Query: 379 GGGII 383 GGG I Sbjct: 352 GGGTI 356 >gi|282901416|ref|ZP_06309341.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Cylindrospermopsis raciborskii CS-505] gi|281193695|gb|EFA68667.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Cylindrospermopsis raciborskii CS-505] Length = 350 Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust. Identities = 149/372 (40%), Positives = 208/372 (55%), Gaps = 37/372 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV AA+L GYDVIG+TL L K KG CC+ + + DA +C Sbjct: 4 KVVVGLSGGVDSSVAAAILHNQGYDVIGLTLWLM------KGKGQCCS-EGMVDAATICQ 56 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 +++ H + D + F+ ++ S Y+AG TPLPC CNRTVKF +L R+ LG+DV Sbjct: 57 QLSIPHEIVDMRDVFQTNIVDYLVSGYSAGITPLPCSQCNRTVKFGPMLEYAREKLGSDV 116 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R D G R + R D +DQSYFL+ +Q+ L FPLG++ K Sbjct: 117 IATGHYARIAY---DHGTERYQLLRAFDRNKDQSYFLYDLSQELLAGTIFPLGELNKNDT 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQG--------KYFDVVKRINAGIALEGDIVHLNGQI 252 R +A E GL ADK +SQD+C V+ KY + GDIV NG+I Sbjct: 174 RKIAAEYGLKTADKPESQDLCLVESNGSMRAFLDKYL---------VPKPGDIVDSNGKI 224 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 LG+H+G+ +YTIGQR+GLG+A EPL+V+ LD ++ V+VG R + +NW+ Sbjct: 225 LGKHDGVHHYTIGQRKGLGIAAAEPLYVIKLDTVNNLVVVGDRTKGTEKECTVERVNWVS 284 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + + V+IR PV + D V + F++ + + GQA V+Y D Sbjct: 285 MAEPRGTI----RGEVQIRYRSQPVLATIIPGETDCVQLVFDEPQFSITPGQAAVWYEGD 340 Query: 372 SNEARVLGGGII 383 +VLGGGII Sbjct: 341 ----KVLGGGII 348 >gi|110801338|ref|YP_696468.1| tRNA-specific 2-thiouridylase MnmA [Clostridium perfringens ATCC 13124] gi|168211408|ref|ZP_02637033.1| tRNA -methyltransferase [Clostridium perfringens B str. ATCC 3626] gi|24638315|sp|Q8XJH3|MNMA_CLOPE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|123049729|sp|Q0TPH2|MNMA_CLOP1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|110675985|gb|ABG84972.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium perfringens ATCC 13124] gi|170710614|gb|EDT22796.1| tRNA -methyltransferase [Clostridium perfringens B str. ATCC 3626] Length = 359 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 140/365 (38%), Positives = 210/365 (57%), Gaps = 15/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARRVC 80 +VV+ MSGGVDSSV A LLK GYDVIGVT+Q++ K +R+G CC+ V DARRV Sbjct: 5 KVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARRVA 64 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +++ YV ++ + F+ VI F Y G TP PC+ CN+ +KF +LL + +GAD Sbjct: 65 QKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + G R + R D +DQ+Y L+ TQ+QL P G+ K+ + Sbjct: 125 VATGHYAKIEERDG-----RFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKDKI 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+E+GLD+ +K DS++ICF+ + + G+ V G +LG+H GI+ Sbjct: 180 REIAKEIGLDVHNKKDSEEICFIPDNNHGRYICEAAPNKVRPGNFVDKYGNVLGKHKGIV 239 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQR+GLG+A+G P+FV ++ ++ V+VGP E + + ++IN++ E + Sbjct: 240 YYTIGQRKGLGLALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISIDKLEGPM 299 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + KIR S P + ++G V V FE + + GQ+ VFY D V+G Sbjct: 300 ----EVEAKIRYSARPAKATISPMENGRVKVSFEDKQRAITKGQSVVFYKDD----LVVG 351 Query: 380 GGIIS 384 GGII Sbjct: 352 GGIIE 356 >gi|289450037|ref|YP_003475194.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184584|gb|ADC91009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 380 Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 144/363 (39%), Positives = 203/363 (55%), Gaps = 11/363 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80 +V+VAMSGGVDSSV A LL GYDV G T+Q++ N R+ + CC+ V DARRV Sbjct: 5 KVLVAMSGGVDSSVAAKLLVDHGYDVTGATMQIWQNEREENHCDRGCCSLSAVEDARRVA 64 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 I + +YV ++++ FR VI PF +Y GETP PC+ CNR +KF + L +G D Sbjct: 65 AKIGIPYYVLNFKDDFRKQVIAPFVDAYWQGETPNPCILCNRHIKFEEFLQKALMMGFDH 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R V + R + +DQ+Y L+ TQQQL L PLGD+ KE V Sbjct: 125 IATGHYGR---VVYNQATGRYALALSATTAKDQTYALYTLTQQQLSHLLLPLGDLVKERV 181 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A E GL +A+K DSQ+ICFV Y V+ +A + G+ + +G +LGRH G+I Sbjct: 182 REIALEAGLPVANKRDSQEICFVTDNNYARFVEEFSARTSRPGNFILSDGTVLGRHRGLI 241 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +YTIGQR+GLG+A PLFV L +++ VI+ E L + W + + Sbjct: 242 HYTIGQRKGLGIAYKHPLFVKALRMDTNEVILAADEDLYATALIANNPVWSAWPKLSEPL 301 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 K ++ R++ P ++ DD V + F + + + GQA V Y D VLGG Sbjct: 302 --SVKAKIRYRATAAPATLY-PLADDQVGLIFAEPQRAITPGQAVVCYKDD----LVLGG 354 Query: 381 GII 383 I Sbjct: 355 ATI 357 >gi|168207849|ref|ZP_02633854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium perfringens E str. JGS1987] gi|169343749|ref|ZP_02864748.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium perfringens C str. JGS1495] gi|169298309|gb|EDS80399.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium perfringens C str. JGS1495] gi|170660837|gb|EDT13520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium perfringens E str. JGS1987] Length = 359 Score = 255 bits (652), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 140/365 (38%), Positives = 210/365 (57%), Gaps = 15/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARRVC 80 +VV+ MSGGVDSSV A LLK GYDVIGVT+Q++ K +R+G CC+ V DARRV Sbjct: 5 KVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARRVA 64 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +++ YV ++ + F+ VI F Y G TP PC+ CN+ +KF +LL + +GAD Sbjct: 65 QKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + G R + R D +DQ+Y L+ TQ+QL P G+ K+ + Sbjct: 125 VATGHYAKIEERDG-----RFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKDKI 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+E+GLD+ +K DS++ICF+ + + G+ V G +LG+H GI+ Sbjct: 180 REIAKEIGLDVHNKKDSEEICFIPDNNHGRYICEAAPNKVRPGNFVDKYGNVLGKHKGIV 239 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQR+GLG+A+G P+FV ++ ++ V+VGP E + + ++IN++ D + Sbjct: 240 YYTIGQRKGLGLALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISI----DKL 295 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + KIR S P + ++G V V FE + + GQ+ VFY D V+G Sbjct: 296 EGHMEVEAKIRYSARPAKATISPMENGRVKVSFEDKQRAITKGQSVVFYKDD----LVVG 351 Query: 380 GGIIS 384 GGII Sbjct: 352 GGIIE 356 >gi|189426122|ref|YP_001953299.1| tRNA-specific 2-thiouridylase MnmA [Geobacter lovleyi SZ] gi|226704771|sp|B3E966|MNMA_GEOLS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|189422381|gb|ACD96779.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacter lovleyi SZ] Length = 354 Score = 255 bits (652), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 149/371 (40%), Positives = 217/371 (58%), Gaps = 31/371 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+ VAMSGGVDSSVVAALL++ G++VIG+T+QL+ + G +D +V Sbjct: 3 RIAVAMSGGVDSSVVAALLQQQGHEVIGITMQLFEPCSSGP-------GTPAHDGAQVAA 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H++ E +FR+ +I F Y G+TP PC+ CNR +KF LL R+LGA++L Sbjct: 56 QLGIPHHLLRLEPQFRDLIIDNFIDQYRQGQTPNPCILCNRLIKFGLLLEQARELGAELL 115 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCR---PMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197 ATGHY+R VG DG +C + +DQSYFL++ +QQQL + FPLG++ K Sbjct: 116 ATGHYVRRT--VGPDG-----LCHLRTAANQAKDQSYFLYSLSQQQLRQVIFPLGEIASK 168 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRH 256 + VR LA GL +A K DSQ++CF+ Y +++ GI A G+IVH+ GQ+LGRH Sbjct: 169 DEVRSLATGFGLAVATKGDSQEVCFIPNDDYAAFLEQ--QGIKASPGNIVHIGGQVLGRH 226 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 +G YTIGQR+GLG+ EPL+V+ +D + + ++VG ++ L + +I+W+ Sbjct: 227 SGTHRYTIGQRKGLGIGWSEPLYVLEIDSSRNLIVVGEQQHLLKAGLIGADISWI----- 281 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 F KIR PVP V+ DD V F++++ V GQ VFY D Sbjct: 282 IPPPATSFNTTCKIRYRHQPVPCRVELLADDQCRVLFDEAQRSVTPGQFVVFYQDD---- 337 Query: 376 RVLGGGIISGS 386 +VLGGG I + Sbjct: 338 QVLGGGRIQAA 348 >gi|162455579|ref|YP_001617946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sorangium cellulosum 'So ce 56'] gi|205828973|sp|A9EXM5|MNMA_SORC5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|161166161|emb|CAN97466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sorangium cellulosum 'So ce 56'] Length = 385 Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 149/377 (39%), Positives = 203/377 (53%), Gaps = 21/377 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV +AMSGGVDSSV AA L GY+V+GVTL L++ K CCA +D +DARRV D Sbjct: 23 RVFIAMSGGVDSSVAAARLCDAGYEVVGVTLHLWDYPDDGSVKSRCCAPEDQHDARRVAD 82 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + HY FD FR V+ PF +Y AGETP PCV CNR+VK +L + +LG + Sbjct: 83 HLGIPHYTFDRRALFREHVVDPFVEAYLAGETPSPCVACNRSVKLRELFPLAERLGVSWV 142 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +R+ + + G R + R D +DQSYFL +L L FPLGD K+ VR Sbjct: 143 ATGHY--ARVVLEEGGAR---LYRGRDRHKDQSYFLHMLRSDELSRLLFPLGDSTKDEVR 197 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 A GL A+K +SQ++CF+ G+Y V A G IV +G+++G H G+ Sbjct: 198 AEAIARGLPGAEKGESQELCFIPSGRYAPFVADRAADRLRPGPIVDRDGRVVGSHGGVHG 257 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 +T+GQR+G+GV++G P FVV LD S V +G L + + W D +F Sbjct: 258 FTVGQRKGIGVSLGRPAFVVGLDAASGAVHLGDEGDLYAAGAEIADAVWCDDAVFP---- 313 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDD------GVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + V++R+ + P ++R D F V+ GQ V Y D Sbjct: 314 --LEAEVRVRARHEAAPGIIERRRDPATGAESFVARFASPVRSVSPGQMAVVYRGD---- 367 Query: 376 RVLGGGIISGSKRSDAV 392 RVLGGG I + RS A Sbjct: 368 RVLGGGRIKAALRSQAA 384 >gi|302387623|ref|YP_003823445.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium saccharolyticum WM1] gi|302198251|gb|ADL05822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium saccharolyticum WM1] Length = 372 Score = 255 bits (651), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 141/367 (38%), Positives = 210/367 (57%), Gaps = 18/367 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK--GSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ ++ G CC V DARRV Sbjct: 18 KVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEDTGTQEENGGCCGLSAVDDARRV 77 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + +YV +++E F++ VI F Y G TP PC+ CNR VK+ LL + +GAD Sbjct: 78 AWDLGIPYYVMNFKEEFKSQVIDYFVGEYQKGRTPNPCIACNRYVKWESLLKRSLDIGAD 137 Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY + +L G R + + + +DQ+Y L+ TQ QL P+G K+ Sbjct: 138 YIATGHYAQIEKLPNG-----RYALKKSVTAAKDQTYALYNLTQHQLSHTLMPVGAYSKD 192 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A + L +A K DSQ+ICF+ Y ++ A EG+ V L+GQ++GRH G Sbjct: 193 QIREIADRINLMVAHKPDSQEICFIPDNDYAGFIEESAGEKAPEGNFVDLSGQVIGRHKG 252 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFE 317 I +YT+GQR+GL ++MG P+FVV + ++ V++G + + + INW+ DGL Sbjct: 253 ITHYTVGQRKGLNLSMGRPVFVVEIRPEANEVVIGTGDDVFSQTLRANHINWMAVDGLHG 312 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEAR 376 +++ + KIR S ++ +DGV F++ + + GQA VFY D Sbjct: 313 ESM----RVLAKIRYSHKGAMCTIREAEDGVVECRFDEPQRAITPGQAVVFYEGD----Y 364 Query: 377 VLGGGII 383 V+GGG I Sbjct: 365 VVGGGTI 371 >gi|197119634|ref|YP_002140061.1| tRNA-specific 2-thiouridylase MnmA [Geobacter bemidjiensis Bem] gi|197088994|gb|ACH40265.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34)-thioltransferase [Geobacter bemidjiensis Bem] Length = 355 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 158/377 (41%), Positives = 215/377 (57%), Gaps = 29/377 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQD 72 + N K +V VAMSGGVDSS VAALLK G +VIG+ ++L+ + + KG Sbjct: 1 MSGNFKGKKVAVAMSGGVDSSTVAALLKEQGAEVIGINMKLFARDGEDPQAKG------- 53 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DA+ V + + + ++ EE+F ++ F + Y GETP PCV CNR VKF LL Sbjct: 54 --DAQIVAEYLGIEFHLVHLEEQFSRLIMEDFRAQYLGGETPNPCVRCNRYVKFGLLLDK 111 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 +LGA+ LATGHY+R+ DDG ++ + L +DQSYFL+ TQ+QL + FPL Sbjct: 112 ALELGAEYLATGHYVRTSR---DDGGSYHLL-KAAFLAKDQSYFLYTLTQKQLSHVVFPL 167 Query: 193 GDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 GDM K+ VR LA + GL +A KSDSQ+ICFV Y +++ GDIVH++G Sbjct: 168 GDMPSKDEVRRLAEKFGLPVAQKSDSQEICFVPGDDYVAFLEKGGRVAGKSGDIVHVDGT 227 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 +LGRH G YTIGQRRGLGVA EPL+VV +D RV+VG L + ++NW+ Sbjct: 228 VLGRHGGTHRYTIGQRRGLGVAWKEPLYVVSIDALQGRVVVGEAGQLFASGLVACDLNWV 287 Query: 312 GDGLFEDAVVDG--FKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFY 368 V+G F+ KIR Q P+ V+ +G+ V F + + V GQ+ VFY Sbjct: 288 -------VPVEGETFETTCKIRYRQQPIACRVKLLGEGLGEVYFAEPQKSVTPGQSVVFY 340 Query: 369 TSDSNEARVLGGGIISG 385 D +LGGG I G Sbjct: 341 REDE----LLGGGRIVG 353 >gi|197122790|ref|YP_002134741.1| tRNA-specific 2-thiouridylase MnmA [Anaeromyxobacter sp. K] gi|196172639|gb|ACG73612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaeromyxobacter sp. K] Length = 351 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 156/364 (42%), Positives = 203/364 (55%), Gaps = 13/364 (3%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR++VAMSGGVDSS AALL G++VIGVT+++ + A++ + SCCA DV DAR Sbjct: 1 MRILVAMSGGVDSSTAAALLAGHGHEVIGVTMRVADYSDAARGR-SCCAPDDVEDARAAA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + YV + E RFR VI F Y G TP PCV CN VKF LL+ R LGA Sbjct: 60 RRLGIPFYVANVEARFRERVIDRFVDDYVEGRTPNPCVACNTEVKFDWLLARARALGAK- 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R V + G RR ++ D +DQSYFL+ Q L D+ FP+G + K V Sbjct: 119 LATGHYAR----VEERGGRRALLT-AADPAKDQSYFLYGLGQDALRDVLFPVGALAKPVV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R A GL +ADK DSQ+ICFV +G D V G+IV G++LGRH+G+ Sbjct: 174 RAEAARAGLAVADKPDSQEICFVTRGDAGDYVALRAPARIRPGEIVSTAGEVLGRHDGVH 233 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +T+GQRRGLG+A P +VV LD ++RV+VG E R +RE +W+ AV Sbjct: 234 RFTVGQRRGLGIAGAVPRYVVRLDAAAARVVVGSAEEASRDRFEVREASWVSGAPPAGAV 293 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 + V+ R + V G V + GVA GQA VFY D V+GG Sbjct: 294 E--LRVKVRHRHEGERGTVRAVSGGAGAEVRLARPVRGVAPGQAAVFYAGDE----VVGG 347 Query: 381 GIIS 384 G I+ Sbjct: 348 GRIA 351 >gi|223936336|ref|ZP_03628248.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [bacterium Ellin514] gi|223894854|gb|EEF61303.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [bacterium Ellin514] Length = 349 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 144/358 (40%), Positives = 203/358 (56%), Gaps = 12/358 (3%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSS AALL GYDVIG+TL+L+ ++ + CC Q V DAR V + + + Sbjct: 1 MSGGVDSSAAAALLLEQGYDVIGITLKLWPQDCVNRAEDKCCGPQAVMDARSVSNKLGIP 60 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 +Y+ D F+ VI FA Y AG TP PCV CN +KF L+S +QLGA+ +ATGH+ Sbjct: 61 YYLVDESADFQKQVIGYFAEEYKAGRTPNPCVMCNEKLKFGTLISRAQQLGAEYIATGHF 120 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 R+ DG R ++ R D +DQSYFLF+ Q QL FPLG + K R +AR+ Sbjct: 121 ARTEKSA--DGSRM-LLKRGRDPRKDQSYFLFSLRQDQLARTIFPLGQLTKTDTRTVARQ 177 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 L ADK +S +ICFV Y +++ N +G+IV+++G +LG+H+GI YTIGQ Sbjct: 178 CELKTADKEESMEICFVPDNDYGKFLQQANLVKKHKGEIVNVHGHVLGQHDGIEFYTIGQ 237 Query: 267 RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKC 326 RRGLG++ +PL+VV LD ++RV+VG +L+ + NW+ + + F+ Sbjct: 238 RRGLGISSAKPLYVVELDAINNRVMVGDESALDRDEFTVERCNWIPFA----SPPETFEV 293 Query: 327 FVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 KIR + + +G V + + GQACVFY D V+GGG I Sbjct: 294 SAKIRYNHPGTGATITPQPNGTAKVKLHVPQRAITPGQACVFYQDD----LVVGGGWI 347 >gi|167037462|ref|YP_001665040.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300914208|ref|ZP_07131524.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter sp. X561] gi|307724557|ref|YP_003904308.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter sp. X513] gi|320115876|ref|YP_004186035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|205810696|sp|B0K991|MNMA2_THEP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|205815314|sp|B0K0P8|MNMA2_THEPX RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|166856296|gb|ABY94704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300889143|gb|EFK84289.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter sp. X561] gi|307581618|gb|ADN55017.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter sp. X513] gi|319928967|gb|ADV79652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 364 Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 141/366 (38%), Positives = 213/366 (58%), Gaps = 14/366 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDARRV 79 RV + MSGGVDSSV A LLK+ G+DVIG+T++++ + KA SCC+ + DA++V Sbjct: 6 RVAIGMSGGVDSSVAAYLLKKQGFDVIGLTMRVWVDHEAKAFDSDKSCCSLKATQDAKKV 65 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + + HY D + F + ++ F + Y G TP PCV CNR +KF +LL +LGA Sbjct: 66 AEILGIPHYTVDLSKIFYDKIVNYFVNEYLKGRTPNPCVLCNRQIKFGELLEKAFELGAY 125 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R D+ +R ++ + +D +DQSY L+ TQ+QL FPLG+ KKE Sbjct: 126 YIATGHYVRKEY---DEKTKRYLLKKGIDSSKDQSYVLYRLTQKQLEHALFPLGNYKKEE 182 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R LA E+ L +A K +SQ+ICF+ Y ++KR G+ ++G+ LG H GI Sbjct: 183 IRALAEELKLPVAKKPESQEICFIPDNDYSGLIKRQVKDEIKPGEFRDVHGKFLGYHKGI 242 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 I+YTIGQRRGLG++ PL+VV +D ++ V+VG +E + + N++ E Sbjct: 243 IHYTIGQRRGLGLSSDRPLYVVDIDVKNNVVVVGHQEDVWGEELISSNNNFISIEKLEKE 302 Query: 320 VVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + K KIR ++++ + +D V V F K + + GQ+ VFY D V+ Sbjct: 303 M----KVTAKIRYTAKEEEAIIKPYEEDKVLVKFLKPQRAITPGQSVVFYDKDV----VV 354 Query: 379 GGGIIS 384 GGGII Sbjct: 355 GGGIIE 360 >gi|238926764|ref|ZP_04658524.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Selenomonas flueggei ATCC 43531] gi|238885296|gb|EEQ48934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Selenomonas flueggei ATCC 43531] Length = 366 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 150/364 (41%), Positives = 202/364 (55%), Gaps = 14/364 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS-RKASKRKGSCCAGQDVYDARRVC 80 RVVVAMSGGVDSSV AALL+ GY+V+GVT++L R A SCC+ V DARRV Sbjct: 10 RVVVAMSGGVDSSVTAALLQEQGYEVVGVTMRLSEEGRDADPDGRSCCSLSSVDDARRVA 69 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + HYV D+ E F+ VI F YA G TP PC+ CNR +KF LL R LGA Sbjct: 70 DILGIPHYVMDFTEPFQQLVIDYFTQEYARGRTPNPCIACNRYIKFEGLLGKIRALGAQH 129 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY +R+ DG + + +D +DQSY L+ TQ+ + + FPLGD +K+ + Sbjct: 130 IATGHY--ARITRTGDGIYH--LRKGIDTAKDQSYVLYHLTQKMMDHVLFPLGDYRKDEI 185 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL +A K++SQ+ICFV Y ++ G I G ILG H GI Sbjct: 186 RHMAEDYGLPVAHKAESQEICFVPHDDYKSYLRMHALQTMRPGAITDRAGHILGTHEGIA 245 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQRRGLG++ PL+V+ LD +RVIVG + + + ++W Sbjct: 246 FYTIGQRRGLGISAEHPLYVIALDAAENRVIVGASDEVFACALTASNLSW----TLPQPP 301 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 KIR + +++ DG V V F + + V GQ+ VFY D+ VLG Sbjct: 302 HAPRSVRAKIRYGKREADAWMEPQGDGTVAVHFSEPQRAVTPGQSIVFYEGDA----VLG 357 Query: 380 GGII 383 GG I Sbjct: 358 GGSI 361 >gi|167040124|ref|YP_001663109.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter sp. X514] gi|166854364|gb|ABY92773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter sp. X514] Length = 387 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 141/366 (38%), Positives = 213/366 (58%), Gaps = 14/366 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDARRV 79 RV + MSGGVDSSV A LLK+ G+DVIG+T++++ + KA SCC+ + DA++V Sbjct: 29 RVAIGMSGGVDSSVAAYLLKKQGFDVIGLTMRVWVDHEAKAFDSDKSCCSLKATQDAKKV 88 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + + HY D + F + ++ F + Y G TP PCV CNR +KF +LL +LGA Sbjct: 89 AEILGIPHYTVDLSKIFYDKIVNYFVNEYLKGRTPNPCVLCNRQIKFGELLEKAFELGAY 148 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R D+ +R ++ + +D +DQSY L+ TQ+QL FPLG+ KKE Sbjct: 149 YIATGHYVRKEY---DEKTKRYLLKKGIDSSKDQSYVLYRLTQKQLEHALFPLGNYKKEE 205 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R LA E+ L +A K +SQ+ICF+ Y ++KR G+ ++G+ LG H GI Sbjct: 206 IRALAEELKLPVAKKPESQEICFIPDNDYSGLIKRQVKDEIKPGEFRDVHGKFLGYHKGI 265 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 I+YTIGQRRGLG++ PL+VV +D ++ V+VG +E + + N++ E Sbjct: 266 IHYTIGQRRGLGLSSDRPLYVVDIDVKNNVVVVGHQEDVWGEELISSNNNFISIEKLEKE 325 Query: 320 VVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + K KIR ++++ + +D V V F K + + GQ+ VFY D V+ Sbjct: 326 M----KVTAKIRYTAKEEEAIIKPYEEDKVLVKFLKPQRAITPGQSVVFYDKDV----VV 377 Query: 379 GGGIIS 384 GGGII Sbjct: 378 GGGIIE 383 >gi|168214260|ref|ZP_02639885.1| tRNA -methyltransferase [Clostridium perfringens CPE str. F4969] gi|170714272|gb|EDT26454.1| tRNA -methyltransferase [Clostridium perfringens CPE str. F4969] Length = 359 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 140/365 (38%), Positives = 209/365 (57%), Gaps = 15/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARRVC 80 +VV+ MSGGVDSSV A LLK GYDVIGVT+Q++ K +R+G CC+ V DARRV Sbjct: 5 KVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARRVA 64 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +++ YV ++ + F+ VI F Y G TP PC+ CN+ +KF +LL + +GAD Sbjct: 65 QKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + G R + R D +DQ+Y L+ TQ+QL P G+ K+ + Sbjct: 125 VATGHYAKIEERDG-----RFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKDKI 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+E+GLD+ +K DS++ICF+ + + G+ V G LG+H GI+ Sbjct: 180 REIAKEIGLDVHNKKDSEEICFIPDNNHGRYICEAAPNKVRPGNFVDKYGNALGKHKGIV 239 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQR+GLG+A+G P+FV ++ ++ V+VGP E + + ++IN++ E + Sbjct: 240 YYTIGQRKGLGLALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISIDKLEGPM 299 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + KIR S P + ++G V V FE + + GQ+ VFY D V+G Sbjct: 300 ----EVEAKIRYSARPAKATISPMENGRVKVSFEDKQRAITKGQSVVFYKDD----LVVG 351 Query: 380 GGIIS 384 GGII Sbjct: 352 GGIIE 356 >gi|118580257|ref|YP_901507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pelobacter propionicus DSM 2379] gi|205816920|sp|A1AQ29|MNMA_PELPD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|118502967|gb|ABK99449.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pelobacter propionicus DSM 2379] Length = 355 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 154/374 (41%), Positives = 211/374 (56%), Gaps = 24/374 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC-CAGQDVYDARRV 79 M++ VAMSGGVDSSV AALLK G+++IG+T+Q + SC AG +DA V Sbjct: 1 MKIAVAMSGGVDSSVAAALLKEQGHEIIGITMQFFAP--------SCQGAGTPAHDAAVV 52 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + ++H++ D E FR +I F S Y +G+TP PCV CNR VKF LL R+ GAD Sbjct: 53 AAHLGITHHLLDLEHDFRQLIINDFISQYRSGQTPNPCVRCNRFVKFGLLLDAARERGAD 112 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KKE 198 +LATGHY R+ + DG R + +L +DQ+YFL +Q++L + FPLGD+ K+ Sbjct: 113 LLATGHYARTS--IDPDGTRHLRVA--ANLRKDQTYFLHTLSQERLARVVFPLGDIGSKD 168 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VRDLA GL +A+K DSQ++CF+ Y ++ A GDIVH+NG++LGRH G Sbjct: 169 EVRDLAHRFGLPVAEKGDSQEVCFIPNDDYVSYLEENCALGGETGDIVHVNGRLLGRHRG 228 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 YTIGQR+GLG+A EPL+VV +D V+VG + + E+ W+ E+ Sbjct: 229 THRYTIGQRKGLGIAWSEPLYVVEIDAARKLVVVGEEPHVYAQGLKAEEVGWIIAPGKEE 288 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSNEARV 377 F+ KIR PV V G V F + V GQ+ VFY D V Sbjct: 289 -----FEASCKIRYRHQPVACRVTLLQGGACRVLFHEPLKAVTPGQSVVFYQDDE----V 339 Query: 378 LGGGIISGSKRSDA 391 LGGG I+ + + D Sbjct: 340 LGGGRITAAIKRDG 353 >gi|220929349|ref|YP_002506258.1| tRNA-specific 2-thiouridylase MnmA [Clostridium cellulolyticum H10] gi|219999677|gb|ACL76278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium cellulolyticum H10] Length = 359 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 137/365 (37%), Positives = 210/365 (57%), Gaps = 14/365 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK--GSCCAGQDVYDARRV 79 +V++ MSGGVDSSV AA+L R GY+VIGVTLQ++ +RK G CC+ V DARRV Sbjct: 5 KVMLGMSGGVDSSVAAAILLRQGYEVIGVTLQIWQDMDEERRKSEGGCCSLSAVDDARRV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + + +YV ++++ F VI F Y G TP PC+ CNR VK+ +L +G D Sbjct: 65 ANKLGIPYYVLNFKDIFSKTVIEYFKEEYFKGRTPNPCIACNRHVKWQAMLDKALSMGID 124 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + + D R I+ + + ++DQ+Y L+ TQQQL P+GD K+ Sbjct: 125 YIATGHYAK---VIQDAETGRFILKKSVTDKKDQTYALYNLTQQQLSHTLMPVGDYTKDE 181 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R++A+E+GL +A K DSQ+ICF+ Y + + G V G +LG H GI Sbjct: 182 IREIAKEIGLSVATKPDSQEICFIHDNDYGKFLSENCDKKIVPGKFVDTKGNVLGNHKGI 241 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 ++YTIGQR+GLG+A G+P+FVV +D ++ V++G + ++ ++N++ + Sbjct: 242 VHYTIGQRKGLGIAFGKPMFVVAVDPVNNTVVLGDDSEVFSEKLTASDLNFIS----IEK 297 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 +DG + KIR S P + D+ + V F+ + + GQ+ VFY D V+ Sbjct: 298 PIDGMRVNAKIRYSAKEAPATISIIDENRIRVVFDTPQRAITPGQSVVFYDGDV----VV 353 Query: 379 GGGII 383 GGG I Sbjct: 354 GGGTI 358 >gi|78043170|ref|YP_361010.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Carboxydothermus hydrogenoformans Z-2901] gi|123575599|sp|Q3AA24|MNMA_CARHZ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|77995285|gb|ABB14184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Carboxydothermus hydrogenoformans Z-2901] Length = 365 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 147/366 (40%), Positives = 210/366 (57%), Gaps = 14/366 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDARRV 79 +V+VAMSGGVDSSV AALL GY+V+GVT+Q+++ + + CC+ V DARRV Sbjct: 8 KVLVAMSGGVDSSVTAALLLEQGYEVVGVTMQIWDPKIEVIGEEYVGCCSIYAVNDARRV 67 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + +YV ++ E F VI F Y G TP PC+ CNR +KF LL LG D Sbjct: 68 ADRLGIPYYVLNFRELFERKVIDYFTEEYLRGRTPNPCIACNRYIKFDALLKKALSLGMD 127 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R +Y D GK + R +D ++DQ+Y L+ TQ L L PLG+ KE Sbjct: 128 YMATGHYARV-VYKDDIGKYG--LFRGVDRKKDQTYVLYNLTQDMLRRLLLPLGEYTKEQ 184 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR+LAR+ L ADK +SQ+ICFV Y +K G+ V +NG++LG+H G Sbjct: 185 VRELARKYNLVTADKPESQEICFVPDNDYRKFLKERRGEEIKPGNFVDVNGRVLGQHQGY 244 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YTIGQR+GLG+A+G+P +VV + ++ V++G + + ++N+ L+ D Sbjct: 245 PYYTIGQRKGLGLALGKPYYVVDIRPETNEVVIGEASEIFSPGLIASDLNF----LWFDE 300 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + F+ +IR + P P V+R D V V F + + + GQA VFY D +L Sbjct: 301 IPERFEAQAQIRYNAKPQPAVVERIGKDKVKVVFNEPQRAITPGQAVVFYRGDE----LL 356 Query: 379 GGGIIS 384 GGG I Sbjct: 357 GGGTIE 362 >gi|108756833|ref|YP_631693.1| tRNA-specific 2-thiouridylase MnmA [Myxococcus xanthus DK 1622] gi|123374481|sp|Q1D6N0|MNMA_MYXXD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|108460713|gb|ABF85898.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Myxococcus xanthus DK 1622] Length = 348 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 158/364 (43%), Positives = 203/364 (55%), Gaps = 18/364 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MRVVVAMSGGVDSS AALLK G++VIG+TL+++ S + GSCC+ D+ DAR V Sbjct: 1 MRVVVAMSGGVDSSAAAALLKEQGHEVIGITLRVW-SYEGKATCGSCCSPDDIDDARAVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 T+ + YV + EE F++ VI PF SY G TP+PCV CNR VKF+ LL R LGA Sbjct: 60 QTLGIPFYVANAEEIFQDRVINPFVQSYLGGRTPIPCVACNRDVKFNFLLKRARALGAR- 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R G R ++ R +D +DQSYFLF Q +L D+ FP+G M K V Sbjct: 119 LATGHYARVEEVDG-----RFVLRRAVDAAKDQSYFLFTLGQDELRDILFPVGGMTKAEV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A GL + K +S +ICFV G Y V+++ AG GDIV G +LG H GI Sbjct: 174 RAVAERHGLVTSQKPESMEICFVPDGDYAGFVEKV-AGPQPAGDIVDTEGNVLGTHQGIH 232 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YT+GQR+GL + GE +V L+ + RV+VGP E L + +W+ Sbjct: 233 RYTVGQRKGLNLGGGEIRYVHRLEPETQRVVVGPAEGTGRDNFGLLQPHWVDGPPPASQP 292 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 V+ V+IR V + G V V + V GQA V Y D RVLG Sbjct: 293 VE-----VRIRHRHSGAQGRVHVSPHGLVSVKLDAPARAVTPGQAAVVYDQD----RVLG 343 Query: 380 GGII 383 GG I Sbjct: 344 GGWI 347 >gi|303241870|ref|ZP_07328364.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acetivibrio cellulolyticus CD2] gi|302590544|gb|EFL60298.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acetivibrio cellulolyticus CD2] Length = 360 Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 141/365 (38%), Positives = 216/365 (59%), Gaps = 16/365 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDARRVC 80 V++ MSGGVDSSV AA+L GYDVIGVT+Q++ K + +G CC+ V DAR V Sbjct: 6 VMIGMSGGVDSSVAAAVLLEKGYDVIGVTMQIWPETKEEVKLTEGGCCSLSAVDDARGVA 65 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +++ + +YV +++E F VI F Y G+TP PC+ CNR VKF LLS +G D Sbjct: 66 NSLGIPYYVLNFKEVFEEKVINYFIDEYLKGKTPNPCIACNRHVKFESLLSKAVSMGLDY 125 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + D+ ++R ++ + + ++DQ+Y L+ TQ QL + P+G+ K+ V Sbjct: 126 VATGHY---AIIEYDENRKRYLLKKSVTQQKDQTYALYNLTQDQLSKVLMPIGNYSKDVV 182 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R A E+GL +A K DSQ+ICFV Y ++ + G+ V G ILGRH G+I Sbjct: 183 RQKAAELGLCVASKPDSQEICFVDDNNYGRFIQENTDKKIVPGNFVDTKGNILGRHKGLI 242 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDA 319 +YT+GQR+GLG+A G+P++V+ LD ++ VI+G + ++ ++N++ DGL+E Sbjct: 243 HYTVGQRKGLGIAFGKPMYVIGLDVKNNNVILGDNSEVFSDKLIADDLNFISIDGLYEPM 302 Query: 320 VVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 V KIR S+++ + + V V+F+ + + GQ+ VFY D V+ Sbjct: 303 RVKA-----KIRYSAKEGDATIIPIENGKVRVEFDTPQRAITPGQSVVFYEDDI----VV 353 Query: 379 GGGII 383 GGGII Sbjct: 354 GGGII 358 >gi|253580125|ref|ZP_04857392.1| tRNA methyl transferase [Ruminococcus sp. 5_1_39B_FAA] gi|251848644|gb|EES76607.1| tRNA methyl transferase [Ruminococcus sp. 5_1_39BFAA] Length = 360 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 138/365 (37%), Positives = 208/365 (56%), Gaps = 13/365 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80 + ++AMSGGVDSSV A L K G + IG T++L+ N KR+ +CC+ DV DAR VC Sbjct: 3 KAIIAMSGGVDSSVAALLTKETGDECIGATMKLFHNEDIGVKREKTCCSLDDVEDARNVC 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + +YVF++ ERF+ V+ F +Y G TP PC+DCNR +KF + R+L D Sbjct: 63 YRMGIRYYVFNFSERFKEDVMDRFVDAYEHGSTPNPCIDCNRYLKFDKMFQRMRELEYDY 122 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 + TGHY R D+ K R ++ + +D +DQSY L+ TQ+QL + PLG ++K V Sbjct: 123 IVTGHYARVEY---DEEKNRYLLKKAVDDTKDQSYVLYMLTQEQLAHISLPLGGLRKTEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A + G A K DSQDICFV G Y +++ ++ GD V G ILG+H GII Sbjct: 180 REIAEKHGFVNARKHDSQDICFVPDGDYAKFIEQYTGRKSIPGDFVDTEGNILGKHKGII 239 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +YT+GQRRGLG+ L+V + +++V++G E L + ++N + +++ Sbjct: 240 HYTLGQRRGLGIPAASRLYVCDISPKTNQVVLGNNEDLFHSELTATKVNLISC----ESL 295 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + + KIR + +DGV +V F+K + + GQA V Y D V+G Sbjct: 296 KEPMRLKAKIRYRHPEQEAVAWQTEDGVLHVRFDKPQRAITRGQAVVLYDGDI----VVG 351 Query: 380 GGIIS 384 GG+I Sbjct: 352 GGVIE 356 >gi|159897370|ref|YP_001543617.1| tRNA-specific 2-thiouridylase MnmA [Herpetosiphon aurantiacus ATCC 23779] gi|205816856|sp|A9AYA7|MNMA_HERA2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|159890409|gb|ABX03489.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Herpetosiphon aurantiacus ATCC 23779] Length = 357 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 212/369 (57%), Gaps = 15/369 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +++VAMSGGVDSS+ A LLK G+DV GVT+ L+ + CC+ + ARRVC Sbjct: 3 KIMVAMSGGVDSSLTAVLLKEQGHDVTGVTMHLWEGDDNGIMESQCCSVEMTAGARRVCA 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 ++ +YVF+Y++ FR VI F Y++G TP PC+ CNR +KF LL LG D L Sbjct: 63 QYDIPYYVFNYQKDFRKHVIDYFLREYSSGATPNPCLACNRDLKFRVLLERAELLGFDGL 122 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGH+++ + G++ + R +D+ +DQSY L+ +Q++L L FPLG K VR Sbjct: 123 ATGHFVQ----ITGGGEQPYDLRRGIDINKDQSYVLYMLSQRELGRLHFPLGGFTKPQVR 178 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +ARE GL ADK +S DICF+ Y + I G IV+ +G +LG+H G+ Sbjct: 179 QMARERGLVTADKPESMDICFIPDNNYRRFLNEERPEIMQPGPIVNRHGTVLGQHKGLPQ 238 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQR+GLG+A G PLFV+ +D + +IVG + LE + ++ + G E + Sbjct: 239 YTIGQRKGLGIAAGSPLFVIEIDTVRNLLIVGDADELERRDFVIDDVRSV-YGQIEAGIY 297 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 V+IR+ + VP + +DG +++ +++ + V GQA V Y D RV GG Sbjct: 298 A-----VQIRAHGEAVPATITPREDGTLHIRYDQPQRSVTPGQAAVLYRDD----RVFGG 348 Query: 381 GIISGSKRS 389 G IS + S Sbjct: 349 GRISTERYS 357 >gi|291562415|emb|CBL41231.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [butyrate-producing bacterium SS3/4] Length = 358 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 145/367 (39%), Positives = 208/367 (56%), Gaps = 18/367 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + + G CC V DARRV Sbjct: 4 KVVVGMSGGVDSSVAACLLKEQGYDVIGVTMQIWQEEDSCTVEENGGCCGLSAVEDARRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 T+ + +YV ++ + F+ VI F + Y G TP PC+ CNR VK+ LL + ++GAD Sbjct: 64 AWTLGIPYYVMNFRKEFQKNVIDYFVAEYLHGRTPNPCIACNRYVKWEALLERSLEIGAD 123 Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R S+L G R + + +DQ+Y L+ TQ QL P+GD K+ Sbjct: 124 YIATGHYARISQLPNG-----RYTIRNSVTAAKDQTYALYNLTQFQLSKTLMPIGDYTKD 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A + GL +A K DS +ICFV Y ++R + + G+ V NG ILG+H G Sbjct: 179 EVRKIAEDRGLAVAKKKDSMEICFVPDNDYAGFIEREASDVPGCGNFVDKNGVILGKHKG 238 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFE 317 I +YT+GQR+GL +AMG P+FV + ++ V++G + + R++NW+ DGL Sbjct: 239 ITHYTVGQRKGLNLAMGHPVFVTGIRPETNEVVIGDGNDVFSDHLICRDVNWMAIDGLHG 298 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + KIR S P ++ DG V F++ + + GQA VFY + Sbjct: 299 EEK----EVLAKIRYSHKGSPCIIRELPDGTVECQFKEPQRAITPGQAVVFYEDEC---- 350 Query: 377 VLGGGII 383 V+GGG I Sbjct: 351 VVGGGTI 357 >gi|254478804|ref|ZP_05092171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Carboxydibrachium pacificum DSM 12653] gi|214035259|gb|EEB75966.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Carboxydibrachium pacificum DSM 12653] Length = 376 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 145/380 (38%), Positives = 221/380 (58%), Gaps = 17/380 (4%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKG 65 RL +L + KN RVVV MSGGVDSSV A LLK GY+VIGVT+Q++ + +A + +G Sbjct: 7 RLENLSMQKNN---RVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDKDEEAVRVEG 63 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 CC+ V DARRV + I + +YV ++++ F+ VI F Y G TP PC+ CN+ +K Sbjct: 64 GCCSLAAVNDARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNKYIK 123 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F +LL + A +ATGHY D+ + R ++ + +D +DQ+Y L+ TQ QL Sbjct: 124 FEELLKRAWMIDAYYVATGHYAIKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQL 180 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 + FPLG KK+ VR+LA+ +GL +A K DSQ+ICFV Y ++ G+ Sbjct: 181 EHILFPLGKYKKDEVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEF 240 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 G+ LG H GII+YTIGQR+GLG+++G+PL+VV +D ++ V++G + + + Sbjct: 241 RDTRGRFLGYHKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVYGDEL-- 298 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364 I++ + + D + + KIR + ++ +DG V+V F+ + + GQ+ Sbjct: 299 --ISYNNNFISIDKLEKEMRVKAKIRYTAKEQDAVIRPLEDGRVFVKFDNPQRAITPGQS 356 Query: 365 CVFYTSDSNEARVLGGGIIS 384 VFY D V+GGGII Sbjct: 357 VVFYDGDI----VVGGGIIE 372 >gi|89895170|ref|YP_518657.1| hypothetical protein DSY2424 [Desulfitobacterium hafniense Y51] gi|122482441|sp|Q24US9|MNMA_DESHY RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|89334618|dbj|BAE84213.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 370 Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 146/370 (39%), Positives = 204/370 (55%), Gaps = 14/370 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV MSGGVDSS+ AALLK +GY+VIG+TLQ S G CC+ + DARRV Sbjct: 8 KVVVGMSGGVDSSMAAALLKEEGYEVIGITLQTMPS-GGPDDVGGCCSITAIDDARRVAH 66 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + HYV ++ F VI F ++Y +GETP PC CNR V++ + L R LGAD L Sbjct: 67 QLGIPHYVLNFRTIFDENVIDYFTNAYLSGETPNPCTMCNRVVRWGEFLRKARALGADYL 126 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + + D R + RP D +DQ+Y L+ TQ QL FPL D KKE +R Sbjct: 127 ATGHYAK---VLQDPQSGRCFLSRPTDTWKDQTYMLYNLTQDQLKHTLFPLADYKKEHIR 183 Query: 202 DLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 ++A E GL ++ K DSQ+ICF+ Y ++ + G+ V G ILGRH G+I Sbjct: 184 EMAAERGLLRVSRKPDSQEICFIPDDDYVSFIRERSPEKIKPGNFVDRQGNILGRHQGLI 243 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 NYT+GQR+GLGV G+P+FV+ + + VI+G + + H + ++NW+ E + Sbjct: 244 NYTVGQRKGLGVTFGKPMFVLGFNVEGNEVILGEDQEVYAHTLLATDLNWIAIPGVEGPL 303 Query: 321 VDGFKCFVKIRSSQDP-VPVFVQRNDDG-----VYVDFEKSEVGVASGQACVFYTSDSNE 374 K K ++ +P+ G V V+F + + GQA VFY E Sbjct: 304 TVQAKIRYKAPLAEAKIIPLKDSETLPGAIGPVVRVEFTTPQRAITPGQAVVFY---QGE 360 Query: 375 ARVLGGGIIS 384 V GG II+ Sbjct: 361 LVVGGGKIIT 370 >gi|182418877|ref|ZP_02950134.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium butyricum 5521] gi|237667388|ref|ZP_04527372.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377160|gb|EDT74728.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium butyricum 5521] gi|237655736|gb|EEP53292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 360 Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 134/365 (36%), Positives = 207/365 (56%), Gaps = 15/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARRVC 80 +V++ MSGGVDSSV A LLK GY+VIG T+Q++ K +R+G CC+ V DARRVC Sbjct: 6 KVLIGMSGGVDSSVAAYLLKEQGYEVIGATMQIWQEDKEFEEREGGCCSLSAVEDARRVC 65 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + YV ++ + F+ VI PF Y G TP PC++CN+ +KF +LL R +GAD Sbjct: 66 DKLGIPFYVLNFRDYFKEKVIEPFIQEYMDGRTPNPCIECNKHLKFDELLRRARGIGADY 125 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + G R ++ R D +DQ+Y L+ TQ QL P G +K + Sbjct: 126 VATGHYAKIEERDG-----RYLLIRSDDDSKDQTYALYNFTQDQLAHTLMPCGAYEKTKI 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+E+GL + +K DS++ICF+ + + G+ V G +LG+H GI+ Sbjct: 181 REIAKEIGLAVHNKKDSEEICFISDNNHGKYISEARPSRVKPGNFVDKEGNVLGKHKGIV 240 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQR+GLG+++G P+FV ++ ++ VI+G + + + + ++N++ D + Sbjct: 241 YYTIGQRKGLGLSLGRPVFVTGINAKTNEVIIGSEDEIFKNDLIATDVNFIS----FDKL 296 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 KIR S P + +G V V F+ + + GQ+ VFY + V+G Sbjct: 297 EGELNVQAKIRYSARPAEAIIYPLPNGKVKVSFKDKQRAITKGQSVVFYDKEV----VVG 352 Query: 380 GGIIS 384 GGII Sbjct: 353 GGIIE 357 >gi|323485784|ref|ZP_08091119.1| hypothetical protein HMPREF9474_02870 [Clostridium symbiosum WAL-14163] gi|323693136|ref|ZP_08107354.1| hypothetical protein HMPREF9475_02217 [Clostridium symbiosum WAL-14673] gi|323400772|gb|EGA93135.1| hypothetical protein HMPREF9474_02870 [Clostridium symbiosum WAL-14163] gi|323502619|gb|EGB18463.1| hypothetical protein HMPREF9475_02217 [Clostridium symbiosum WAL-14673] Length = 359 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 140/367 (38%), Positives = 210/367 (57%), Gaps = 18/367 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + + G CC V DARRV Sbjct: 5 KVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEEPEIQEENGGCCGLSAVDDARRV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + + +YV +++ F+ V+ F Y G+TP PC+ CNR VK+ LL + +GAD Sbjct: 65 AENLGIPYYVMNFKREFKENVMDYFVQEYIEGKTPNPCIACNRFVKWESLLKRSMDIGAD 124 Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R +L G R + + +DQ+Y L+ TQ QL P+G+ K+ Sbjct: 125 YIATGHYARIEQLENG-----RYTLRKSATAAKDQTYALYNLTQHQLSHTLMPVGEYTKD 179 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R +A ++GL++A K DSQ+ICF+ Y ++ EG+ V +G++LGRH G Sbjct: 180 EIRGMADKIGLNVAHKPDSQEICFIPDHDYAKFIEENTDCRLPEGNFVDKDGRVLGRHKG 239 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFE 317 I +YT+GQR+GL +A+G P+FV + +++ V++G E + R+ ++NW+ +GL + Sbjct: 240 ITHYTVGQRKGLNLALGRPVFVTEIRPDTNEVVIGDNEDVFSRRLTCGKLNWMAVEGLPD 299 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 DG K KIR S P ++ +D V F+ + GQA VFY + Sbjct: 300 ----DGMKVTAKIRYSHKGAPCMIRTIGEDLVECVFDDPQRAATPGQAVVFYDGEY---- 351 Query: 377 VLGGGII 383 V+GGG I Sbjct: 352 VVGGGTI 358 >gi|253699615|ref|YP_003020804.1| tRNA-specific 2-thiouridylase MnmA [Geobacter sp. M21] gi|251774465|gb|ACT17046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacter sp. M21] Length = 355 Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 158/377 (41%), Positives = 215/377 (57%), Gaps = 29/377 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQD 72 + N K +V VAMSGGVDSS VAALLK G +VIG+ ++L+ + + KG Sbjct: 1 MSANYKGRKVAVAMSGGVDSSTVAALLKEQGAEVIGINMKLFARDGEDPQAKG------- 53 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DA+ V + + + ++ EE F ++ F + Y GETP PCV CNR VKF LL Sbjct: 54 --DAQIVAEYLGIEFHLVHLEEEFSRLIMEDFRAQYLGGETPNPCVRCNRYVKFGLLLDK 111 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 +LGA+ LATGHY+R+ DDG ++ + L +DQSYFL+ TQ+QL + FPL Sbjct: 112 ALELGAEYLATGHYVRTSR---DDGGSYHLL-KAAFLAKDQSYFLYTLTQKQLSHVVFPL 167 Query: 193 GDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 GDM K+ VR LA + GL +A KSDSQ+ICFV Y +++ GDIVH++G Sbjct: 168 GDMPSKDEVRRLAEKFGLPVAQKSDSQEICFVPGDDYVAFLEKGGRVAGKSGDIVHVDGA 227 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 +LGRH+G YTIGQRRGLGVA EPL+VV +D RV+VG L + ++NW+ Sbjct: 228 VLGRHSGTHRYTIGQRRGLGVAWKEPLYVVSIDALEGRVVVGEVGRLFAAGLVACDLNWV 287 Query: 312 GDGLFEDAVVDG--FKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFY 368 V+G F+ KIR Q P+ V+ +G+ V F + + V GQ+ VFY Sbjct: 288 -------VPVEGETFETTCKIRYRQQPIACRVKLLGEGLGEVFFAEPQKSVTPGQSVVFY 340 Query: 369 TSDSNEARVLGGGIISG 385 D +LGGG I G Sbjct: 341 RDDE----LLGGGRIVG 353 >gi|167749316|ref|ZP_02421443.1| hypothetical protein EUBSIR_00268 [Eubacterium siraeum DSM 15702] gi|167657707|gb|EDS01837.1| hypothetical protein EUBSIR_00268 [Eubacterium siraeum DSM 15702] Length = 387 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 147/370 (39%), Positives = 213/370 (57%), Gaps = 23/370 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++ +AMSGGVDSSV LLK D Y+V G TL+L++SR + G C + D+ DA+ + Sbjct: 32 KLAIAMSGGVDSSVALVLLK-DKYEVSGYTLKLHDSR-GTDDSGLCGSASDIEDAKAIAA 89 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 V HY+ D + F + V F SY +G TP PCV+CN T+KF LL ++ G + + Sbjct: 90 KFGVPHYLLDMRDLFSDTVQKSFVQSYLSGRTPNPCVECNETIKFGALLDAVKKQGINHI 149 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLE-----RDQSYFLFATTQQQLCDLRFPLGDMK 196 ATGHY+RS D+ R ++ + ++ + +DQSY L+ +QQQL FPLG+M Sbjct: 150 ATGHYVRS---CYDEKSGRWLLKKAINADGTSNAKDQSYVLYRLSQQQLAASVFPLGEMT 206 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ +R +A + GL +DK DSQDICFV G Y ++R +GD + NG ++GRH Sbjct: 207 KDEIRHIAADSGLINSDKPDSQDICFVPDGDYAGFIERYTGNTYPDGDFLDENGNVIGRH 266 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G+I YTIGQRRG+G G+P++V+ + +++ V +G E L +Y +NW+ F Sbjct: 267 KGVIFYTIGQRRGIGTGFGKPMYVIGKNADNNTVTLGSNELLFTDTLYADNLNWIA---F 323 Query: 317 EDAVVDGFKCFVKI--RSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 E + FKC K R ++ P V+ Q RN V V F++ V GQ VFY D Sbjct: 324 EYPESE-FKCRAKTRYRQTEQPCTVYPQGRNT--VRVVFDEKIRAVTPGQHVVFYDGDI- 379 Query: 374 EARVLGGGII 383 VLGGG+I Sbjct: 380 ---VLGGGVI 386 >gi|170760751|ref|YP_001786568.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum A3 str. Loch Maree] gi|205810328|sp|B1KZE1|MNMA1_CLOBM RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 gi|169407740|gb|ACA56151.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A3 str. Loch Maree] Length = 356 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 141/366 (38%), Positives = 214/366 (58%), Gaps = 17/366 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LLK GY+VIGVT+Q++ + + +++G CC+ V DARRV Sbjct: 4 KVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARRVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + I + YV ++++ F+ VI F Y G TP PC+ CN+ +KFS L +G D Sbjct: 64 NKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCITCNKFIKFSSFLDKAMAMGIDY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + + R I+ + D ++DQ+Y L+ TQ QL P G KK + Sbjct: 124 VATGHYA-----IIEKHNDRYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKSKI 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+E+GL + +K DS++ICF+ + +K EG+ V G +LGRH GI+ Sbjct: 179 REIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNVLGRHKGIV 238 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDA 319 YTIGQR+GLG+A G+P++VV ++ + V++G E L + ++IN++ D L E Sbjct: 239 YYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDINYIPFDTLKEPM 298 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 V+ KIR SQ P + +DG V V+F++ + + GQ+ VFY D ++ Sbjct: 299 EVEA-----KIRYSQTPSKAIITPIEDGRVRVNFQEKQRAITKGQSVVFYKDD----LLI 349 Query: 379 GGGIIS 384 GGGII Sbjct: 350 GGGIIE 355 >gi|150015984|ref|YP_001308238.1| tRNA-specific 2-thiouridylase MnmA [Clostridium beijerinckii NCIMB 8052] gi|205813680|sp|A6LSF2|MNMA_CLOB8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|149902449|gb|ABR33282.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium beijerinckii NCIMB 8052] Length = 358 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 136/365 (37%), Positives = 217/365 (59%), Gaps = 15/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LLK+ GYDVIG T+Q++ + + +R+G CC+ V DARRVC Sbjct: 4 KVLVGMSGGVDSSVAAYLLKQQGYDVIGATMQIWQHDEEFEEREGGCCSLSAVDDARRVC 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D +++ YV ++ + F+ VI F Y G+TP PC++CN+ +KF +LL R +GAD Sbjct: 64 DKLDIPFYVLNFRDYFKEKVIDKFVQEYIDGKTPNPCIECNKHLKFDELLRRARGIGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY +++ DD R ++ R D +DQ+Y L+ TQ QL P GD +K + Sbjct: 124 VATGHY--AKIEKRDD---RYLLIRSDDDRKDQTYALYNFTQDQLEHTLMPCGDYEKTKI 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+E+GL + +K DS++ICF+ + + G+ V +G ILG+H GI+ Sbjct: 179 REIAKEIGLAVHNKKDSEEICFISDNNHGKYISEAEPNRVKPGNFVDKSGNILGKHKGIV 238 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQR+GLG+++G P+FV ++ ++ V++G + + + ++N++ E + Sbjct: 239 YYTIGQRKGLGLSLGRPVFVTNINAKTNEVVLGSEDDIFKTELIATDVNFIPFDKLEKEI 298 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + KIR S P + +G V V F++ + + GQ+ VFY ++ V+G Sbjct: 299 ----EVTAKIRYSARPAEATLIPLPNGRVKVIFKEKQRAITKGQSVVFY----DDEIVVG 350 Query: 380 GGIIS 384 GGII Sbjct: 351 GGIIE 355 >gi|257060381|ref|YP_003138269.1| tRNA-specific 2-thiouridylase MnmA [Cyanothece sp. PCC 8802] gi|256590547|gb|ACV01434.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cyanothece sp. PCC 8802] Length = 349 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 151/365 (41%), Positives = 210/365 (57%), Gaps = 23/365 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV AA+L GY+VIG+TL L K KG CC+ + + DA +C+ Sbjct: 3 KVVVGLSGGVDSSVAAAVLHHQGYEVIGLTLWLM------KGKGQCCS-EGMVDAAFICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + H++ D + F+ ++ S Y AG TPLPC CNR VKF +L RQ LG D Sbjct: 56 QLGIPHHIVDSRDVFQANIVNYLVSGYEAGITPLPCSQCNRAVKFGPMLDYARQELGCDR 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R D+ +R + R +D +DQSYFL+ +Q+ L FPLGD KE Sbjct: 116 IATGHYARIRY---DEISQRYQLLRAIDRNKDQSYFLYDLSQEMLAGTVFPLGDQTKEDT 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVV--KRINAGIALEGDIVHLNGQILGRHNG 258 R +A E L A K +SQD+C ++ + IN EGDIV L G++LG+H G Sbjct: 173 RRIAAEFDLKTASKPESQDLCLIEAHGSMKTFLDQYINQK---EGDIVDLEGKVLGKHQG 229 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I +YTIGQR+GLGVA EPL+VV LD ++VIV R + + +NW+ + E Sbjct: 230 IHHYTIGQRKGLGVAAPEPLYVVKLDPIMNQVIVANRANAGRSHCTVTRLNWV--SIAEP 287 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + ++ RSS PV + D+ V + F++ E G+ GQA VFY + +L Sbjct: 288 STPIRVETQIRYRSSAVPVD-LIPLEDNRVKLVFDEPEFGITPGQAAVFYDGEI----LL 342 Query: 379 GGGII 383 GGGII Sbjct: 343 GGGII 347 >gi|188588033|ref|YP_001920516.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum E3 str. Alaska E43] gi|251778087|ref|ZP_04821007.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|205813690|sp|B2V3V9|MNMA_CLOBA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|188498314|gb|ACD51450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum E3 str. Alaska E43] gi|243082402|gb|EES48292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 361 Score = 253 bits (645), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 131/351 (37%), Positives = 210/351 (59%), Gaps = 13/351 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS-RKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LLK GY+VIG T+Q++ ++ +R+G CC+ V DARRVC Sbjct: 7 KVLVGMSGGVDSSVAAYLLKEQGYEVIGATMQIWQEDKEVEEREGGCCSLSAVEDARRVC 66 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D +++ YV ++ + F+ VI PF Y G TP PC++CN+ +KF +LL + +G D Sbjct: 67 DKLDIPFYVLNFRDSFKKKVIEPFIQEYIDGRTPNPCIECNKHLKFDELLRKAQGIGVDY 126 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY +++ DD R ++ R D +DQ+Y L+ TQ QL P G+ K+ + Sbjct: 127 IATGHY--AKIEKKDD---RYMLIRSDDDRKDQTYALYNFTQDQLAHTLMPCGEYTKDRI 181 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+E+GL + +K DS++ICF+ + + G G+ V +G +LG+H GI+ Sbjct: 182 REIAKEIGLAVHNKKDSEEICFISDNDHGKYILNAKPGAVKSGNFVDKSGNVLGKHKGIV 241 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDA 319 YTIGQR+GLG+++G P+FV ++ ++ V++G E + + ++N++ D L ++ Sbjct: 242 YYTIGQRKGLGLSVGRPVFVTDINPRTNEVVIGAEEDIFKTELIAGDLNFITFDKLEKEI 301 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 V+ KIR S P + DG V V F++ + + GQ+ VFY Sbjct: 302 EVEA-----KIRYSAKPAKATIVPLKDGRVKVVFDEKQRAITKGQSVVFYN 347 >gi|307265214|ref|ZP_07546773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter wiegelii Rt8.B1] gi|306919836|gb|EFN50051.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter wiegelii Rt8.B1] Length = 387 Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 142/370 (38%), Positives = 215/370 (58%), Gaps = 14/370 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDARRV 79 RV + MSGGVDSSV A LLK++G+DVIG+T++++ ++ KA SCC+ + DA++V Sbjct: 29 RVAIGMSGGVDSSVAAYLLKKEGFDVIGLTMKVWVDHAAKAFDSDKSCCSLRATQDAKKV 88 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + V HY D+ E F + ++ F + Y G TP PCV CNR +KF +LL +LGA Sbjct: 89 AEMLGVPHYTVDFSEVFYDKIVNYFINEYLKGRTPNPCVLCNRQIKFGELLEKAFELGAY 148 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R D+ +R ++ + +D +DQSY L+ TQ+QL FPLG+ KKE Sbjct: 149 YIATGHYVRKDY---DEKTKRYLLKKGIDSSKDQSYVLYRLTQKQLEHALFPLGNYKKEE 205 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R LA + L +A K +SQ+ICF+ Y +KR G+ ++G+ LG H GI Sbjct: 206 IRALAEGLKLPVAKKPESQEICFIPDNDYSGFIKRQVKDEIKPGEFRDVHGKFLGYHKGI 265 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 I+YTIGQRRGLG++ PL+VV +D ++ V+VG +E + + N++ + Sbjct: 266 IHYTIGQRRGLGLSSDRPLYVVDIDVKNNVVVVGHQEDVWGEELISSNNNFISI----EK 321 Query: 320 VVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + K KIR ++++ + +D V V F K + + GQ+ VFY D V+ Sbjct: 322 LKREMKVTAKIRYTAKEEEAIIKPYEEDKVLVKFLKPQRAITPGQSVVFYDKDV----VV 377 Query: 379 GGGIISGSKR 388 GGGII R Sbjct: 378 GGGIIEKKVR 387 >gi|167751458|ref|ZP_02423585.1| hypothetical protein EUBSIR_02454 [Eubacterium siraeum DSM 15702] gi|167655704|gb|EDR99833.1| hypothetical protein EUBSIR_02454 [Eubacterium siraeum DSM 15702] Length = 358 Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 142/364 (39%), Positives = 210/364 (57%), Gaps = 15/364 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80 + V+AMSGGVDSSV A L+K+ G+D IGVT++L+ N R+ SCC+ DV DAR V Sbjct: 4 KAVIAMSGGVDSSVAAYLMKQRGFDCIGVTMKLFANEDIGISREHSCCSLDDVEDARSVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 ++++ +YVF++ +RF VI F ++Y G TP PC+DCNR +KF L ++L D Sbjct: 64 YSLDMPYYVFNFSDRFETDVIDRFINAYENGITPNPCIDCNRYLKFDKLYMRAKELDRDY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 + TGHY R V DG R ++ + +D +DQSY L+ TQ+QL FPLG+M+K Sbjct: 124 VVTGHYAR----VEKDGNGRFLLKKALDDTKDQSYVLYCLTQEQLSHTIFPLGEMRKSQA 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A G A K+DSQDICFVQ G Y D +++ +GD + +G ++GRH G+I Sbjct: 180 REIAESQGFINARKADSQDICFVQNGSYADFIEQYTGKNYPDGDFLDKDGNVIGRHKGVI 239 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YT+GQR+GLG++ EPL+V ++ S+ V + + L + +IN L Sbjct: 240 RYTVGQRKGLGISAPEPLYVKAVNPVSNTVTLSYNDWLYSSIVKAGDIN-----LISVPE 294 Query: 321 VDG-FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + G + K+R V +N D + F++ + V GQA V Y D+ V+G Sbjct: 295 IKGEMRVKAKVRYRHTEQWATVTQNGDTITAVFDEPQRAVTCGQALVLYDGDT----VVG 350 Query: 380 GGII 383 GG I Sbjct: 351 GGTI 354 >gi|15606458|ref|NP_213838.1| hypothetical protein aq_1224 [Aquifex aeolicus VF5] gi|6226257|sp|O67274|MNMA_AQUAE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|2983672|gb|AAC07238.1| hypothetical protein aq_1224 [Aquifex aeolicus VF5] Length = 356 Score = 252 bits (644), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 146/373 (39%), Positives = 212/373 (56%), Gaps = 26/373 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARR 78 MRV V MSGGVDSSV A LLK G+DVI VTL+ + + ++ CC+ +DV DA R Sbjct: 1 MRVAVGMSGGVDSSVTALLLKEQGHDVIRVTLRFHTVEACEVNETHNVCCSPKDVQDASR 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137 V + + H VF +EE F++ VI F Y G TP PC CNR VK +Q+ Sbjct: 61 VAKRLGIPHLVFSWEEIFKSKVIDYFVEEYKRGRTPNPCALCNREVKTGFFARYLKQVAD 120 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D LATGHY + + +D K ++ RP D +RDQ+YFL ++ L L FPLG K Sbjct: 121 IDKLATGHYAK----IEEDKKYGLVIKRPKDRKRDQTYFLSLVRREDLELLTFPLGAYTK 176 Query: 198 ESVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 E VR++A+ GL++A K DSQ++CF+ G+Y + + G+ I H++G++LG Sbjct: 177 EEVREIAKRYGLEVAQKRDSQEVCFLMGKSPGEYLEGILGKQRGL-----IKHVSGKVLG 231 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H G+ YTIGQRRGLG++ G+P++V+ +D ++ +IVG E L ++ ++EIN Sbjct: 232 EHEGVYRYTIGQRRGLGISYGKPVYVIDIDAKTNTLIVGEEEYLYNDKLLVKEIN----- 286 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F + +IR PVPV +++ ++G V F++ G+ GQ FY D Sbjct: 287 -FHVPLEKWENVSAQIRYRHKPVPVERIEKTEEGFLVKFKEDVRGITPGQVVAFYDGDV- 344 Query: 374 EARVLGGGIISGS 386 +LGGGII S Sbjct: 345 ---LLGGGIIEES 354 >gi|182625650|ref|ZP_02953419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium perfringens D str. JGS1721] gi|177909052|gb|EDT71527.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium perfringens D str. JGS1721] Length = 359 Score = 252 bits (644), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 139/365 (38%), Positives = 209/365 (57%), Gaps = 15/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARRVC 80 +VV+ MSGGVDSSV A LLK GYDVIGVT+Q++ K +R+G CC+ V DARRV Sbjct: 5 KVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARRVA 64 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +++ YV ++ + F+ VI F Y G TP PC+ CN+ +KF +LL + +GAD Sbjct: 65 QKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + G R + R D +DQ+Y L+ TQ+QL P G+ K+ + Sbjct: 125 VATGHYAKIEERDG-----RFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKDKI 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+E+GLD+ +K DS++ICF+ + + G+ V G +LG+H GI+ Sbjct: 180 REIAKEIGLDVHNKKDSEEICFIPDNNHGRYICEAAPNKVRPGNFVDKYGNVLGKHKGIV 239 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQR+GLG+A+G P+FV ++ ++ V+VGP E + + ++IN++ E + Sbjct: 240 YYTIGQRKGLGLALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISIDKLEGPM 299 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + KIR S P + ++ V V FE + + GQ+ VFY D V+G Sbjct: 300 ----EVEAKIRYSARPAKATISPMENVRVKVSFEDKQRAITKGQSVVFYKDD----LVVG 351 Query: 380 GGIIS 384 GGII Sbjct: 352 GGIIE 356 >gi|95930240|ref|ZP_01312978.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfuromonas acetoxidans DSM 684] gi|95133703|gb|EAT15364.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfuromonas acetoxidans DSM 684] Length = 346 Score = 252 bits (644), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 148/366 (40%), Positives = 205/366 (56%), Gaps = 22/366 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K V+VAMSGGVDSSV AALL GY+VIG ++L ++ + + DARR Sbjct: 2 KKNTVLVAMSGGVDSSVTAALLIDQGYEVIGAHMRLLPGDQSIQGEA---------DARR 52 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + + D + F A+I F Y AG TP PCV CN+ KF L ++ +LGA Sbjct: 53 IAEELEIPFHSLDCRDTFNAAIIGDFCREYRAGRTPNPCVRCNQQFKFGALFALADELGA 112 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY R D K +CR + ++DQSYFLF + QL + FPLG + K Sbjct: 113 DYLATGHYARI-----DRQKDHVRLCRGLYKQKDQSYFLFVLSAAQLKRVLFPLGGLTKP 167 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR+LA + L KS+SQDICFV Y ++R ++ G+IVH+NG++LG H+G Sbjct: 168 EVRNLAEKYHLSSRKKSESQDICFVPDNDYIGFLERYDSPWPDHGEIVHINGKVLGTHHG 227 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 YTIGQRRGLG+ EPL+V+ LD RVIVG + +L+ R+ +R++ W Sbjct: 228 THRYTIGQRRGLGIGWTEPLYVIELDAEQQRVIVGEKAALQRDRLQVRDVTWSVPPQHTS 287 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 VD C ++ R + ++ N D V V F++ + GV GQ VFY D VL Sbjct: 288 LRVD---CRIRYRHHPAMATLSIRPNGD-VDVVFDEPQYGVTPGQCAVFYDDDC----VL 339 Query: 379 GGGIIS 384 GGG I+ Sbjct: 340 GGGWIT 345 >gi|297545060|ref|YP_003677362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842835|gb|ADH61351.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 364 Score = 252 bits (644), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 142/369 (38%), Positives = 217/369 (58%), Gaps = 14/369 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDA 76 K+ RVVV MSGGVDSSV A LLK GY+VIGVT+Q++ + +A + +G CC+ V DA Sbjct: 3 KNNRVVVGMSGGVDSSVSAYLLKEQGYEVIGVTMQIWQDKDEEAVRVEGGCCSLAAVNDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV + I + +YV ++++ F+ VI F Y G TP PC+ CN+ +KF +LL + Sbjct: 63 RRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNKYIKFEELLKRAWMI 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 A +ATGHY D+ +RR ++ + +D +DQ+Y L+ TQ QL + FPLG K Sbjct: 123 DAYYVATGHYAIKEY---DEERRRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKYK 179 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ VR LA+++GL +A K DSQ+ICFV Y ++ G+ G+ LG H Sbjct: 180 KDEVRKLAKDLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGYH 239 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GII+YTIGQR+GLG+++G+PL+VV +D ++ V++G + + + I++ + + Sbjct: 240 KGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVYGDEL----ISYNNNFIS 295 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375 D + + KIR + ++ +DG V+V F+ + + GQ+ VFY D Sbjct: 296 IDKLEGEMRVKAKIRYTAKEQDAVIRPLEDGRVFVKFDSPQRAITPGQSVVFYDGDI--- 352 Query: 376 RVLGGGIIS 384 V+GGGII Sbjct: 353 -VVGGGIIE 360 >gi|330838778|ref|YP_004413358.1| tRNA-specific 2-thiouridylase mnmA [Selenomonas sputigena ATCC 35185] gi|329746542|gb|AEB99898.1| tRNA-specific 2-thiouridylase mnmA [Selenomonas sputigena ATCC 35185] Length = 352 Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 144/363 (39%), Positives = 211/363 (58%), Gaps = 19/363 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V VAMSGGVDSS+ AALL+ GY+V+G+T+QL + + S DARRV D Sbjct: 4 KVAVAMSGGVDSSLCAALLQEQGYEVLGITMQLSDDSREMNGVSSAAT-----DARRVAD 58 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H V D+ F + V+ F + Y TP PCV CNR +KF +LLS ++ GAD L Sbjct: 59 FLGIEHVVADFRTLFSDKVVDYFLTEYLTARTPNPCVICNRFLKFGELLSFAKEKGADFL 118 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R + +DG + + D ++DQSY L+ ++ L + FPLG +KE R Sbjct: 119 ATGHYVR--VEKEEDGSFS--LKKGRDEKKDQSYVLYRLPREILSHILFPLGSYRKEETR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA+++ L +A+K++SQ+ICFV + Y + + GDIV + GQILG+H G+ Sbjct: 175 ALAQKLSLPVANKAESQEICFVPEDDYKAYLSQHRPNRFHTGDIVDMQGQILGQHRGLPF 234 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQR+GLG+A PL+V+ LD+ ++RVIVG E L ++ ++NWL + ++ V Sbjct: 235 YTIGQRKGLGIAAAHPLYVIALDEANNRVIVGKNEELYASSLFASDVNWLMEEPTQEISV 294 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 KIR V V +DG V V F + + V GQ+ VFY+ + R++GG Sbjct: 295 HA-----KIRYGSREVQANVLPLEDGAVKVSFLEPQRAVTPGQSVVFYSGE----RLVGG 345 Query: 381 GII 383 I Sbjct: 346 ATI 348 >gi|291542284|emb|CBL15394.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ruminococcus bromii L2-63] Length = 357 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 139/364 (38%), Positives = 207/364 (56%), Gaps = 13/364 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80 + ++AMSGGVDSSV A L K GYD G+TL+L+ N KR+ +CC+ D+ DARRVC Sbjct: 4 KALIAMSGGVDSSVAAFLTKDMGYDATGITLKLFDNEDIGEKREKTCCSLDDIDDARRVC 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + +YV+++++ F+ VI F +Y G TP PC+DCNR +KF L+ +L D Sbjct: 64 LKLGIPYYVYNFKDSFKENVIDRFIRAYENGTTPNPCIDCNRFIKFEKLIRRAEELDFDC 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 + TGHY D G R ++ + +D +DQSY L+ TQ+QL PLG KE V Sbjct: 124 VVTGHYSTIEY---DKGADRYLLKKSVDSTKDQSYVLYCLTQRQLAKTLLPLGTYTKEKV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A E+GL A K DSQDICFV G Y +++ G+ V G ILG H GII Sbjct: 181 REIANELGLINARKHDSQDICFVPDGDYAKFIEQYTGRTYPNGNFVDTKGHILGEHKGII 240 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YT+GQR+GLG+A+ P++V + +++ VI+ L +Y +IN + D + Sbjct: 241 RYTVGQRKGLGLALPHPMYVKEKNLDTNEVILCDNNELFSKELYATDINLIT----CDKI 296 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 K ++R SQ V++ DD +++ F++ + ++ GQA V Y + V+G Sbjct: 297 DKPIKVKARVRYSQPEKDAIVEQIDDNTLHIVFDEPQRAISKGQAAVLYDGEY----VVG 352 Query: 380 GGII 383 GG I Sbjct: 353 GGTI 356 >gi|307151112|ref|YP_003886496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cyanothece sp. PCC 7822] gi|306981340|gb|ADN13221.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cyanothece sp. PCC 7822] Length = 353 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 151/364 (41%), Positives = 208/364 (57%), Gaps = 23/364 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV +SGGVDSS AA L GY+V+G+TL L K KG CC+ + + DA +C+ Sbjct: 4 VVVGLSGGVDSSTAAATLHHQGYEVVGLTLWLM------KGKGQCCS-EGMVDAAFICEQ 56 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVL 141 + + H++ D + F+ +I S Y AG TPLPC CNR VKF +L RQ LG D + Sbjct: 57 LGIPHHIVDSRDVFQENIIDYLVSGYEAGITPLPCSQCNRAVKFGPMLRYARQELGIDCI 116 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R D+ +R + R +D +DQSYFL+ TQ L FPLG+ KE R Sbjct: 117 ATGHYARIRY---DETTQRYQLLRAVDRNKDQSYFLYDLTQDLLAGTIFPLGNQTKEETR 173 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVV--KRINAGIALEGDIVHLNGQILGRHNGI 259 +A E GL ADK +SQD+C ++ + I+ EGDIV L G++LG+H GI Sbjct: 174 RIANEFGLKTADKPESQDLCLIEAHGSMQAFLDQYIHQK---EGDIVDLKGKVLGKHKGI 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQR+G+GVA EPL+VV LD ++VIVG R + +NW+ + E + Sbjct: 231 HHYTIGQRKGIGVAAAEPLYVVKLDPVMNQVIVGNRADAGKPECSVSRMNWV--SIAEPS 288 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + V+ RSS PV V + D+ V + F++ + G+ GQA V Y + +LG Sbjct: 289 SPIHTEVQVRYRSSAVPVDV-IPLGDNRVKLVFDEPQFGITPGQAAVLYDGEV----LLG 343 Query: 380 GGII 383 GGII Sbjct: 344 GGII 347 >gi|323702190|ref|ZP_08113857.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfotomaculum nigrificans DSM 574] gi|323532877|gb|EGB22749.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfotomaculum nigrificans DSM 574] Length = 366 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 142/369 (38%), Positives = 211/369 (57%), Gaps = 16/369 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG---SCCAGQDVYDARR 78 +V+ AMSGGVDSSV AALL++ GY+V+GVT+Q+++ + G CC+ V DARR Sbjct: 6 KVIAAMSGGVDSSVTAALLQQQGYEVVGVTMQIWDP-DVTVVDGDYVGCCSLSAVDDARR 64 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + +YVF++ E F VI F Y G TP PC+ CNR +KF LL RQ+G Sbjct: 65 VANILGIPYYVFNFRELFTEKVIQYFVDEYLRGRTPNPCIACNRFIKFEALLQKARQMGF 124 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY +RL ++ KR + + D +DQ+Y L+ TQ Q+ PL D KE Sbjct: 125 DYIATGHY--ARLGYSEEYKRYTVR-KARDERKDQTYVLYGFTQDQIAHTLMPLADYTKE 181 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++AR GL A K +SQ+ICFV Y + ++ + G + L G ++G+H G Sbjct: 182 QVREMARRWGLPTATKPESQEICFVHDNNYRNFLEERSVEGIKPGPFLDLKGNVIGQHRG 241 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I YTIGQRRGLG+A GE ++VV +D + VIVGP E++ + + N+ + D Sbjct: 242 IPFYTIGQRRGLGIATGERVYVVDIDPERNAVIVGPEEAIWGTELIASDNNF----ILYD 297 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + ++R + P P ++ ++G V V F+ + + GQA V+Y D + Sbjct: 298 KITGPTEVEAQVRYNSKPSPALLEPLENGLVKVTFKYPQRSITPGQAVVYYQGDY----L 353 Query: 378 LGGGIISGS 386 +GGG I S Sbjct: 354 VGGGTIEKS 362 >gi|125973240|ref|YP_001037150.1| tRNA-specific 2-thiouridylase MnmA [Clostridium thermocellum ATCC 27405] gi|256003718|ref|ZP_05428706.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium thermocellum DSM 2360] gi|281417440|ref|ZP_06248460.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium thermocellum JW20] gi|205813738|sp|A3DDC8|MNMA_CLOTH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|125713465|gb|ABN51957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium thermocellum ATCC 27405] gi|255992279|gb|EEU02373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium thermocellum DSM 2360] gi|281408842|gb|EFB39100.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium thermocellum JW20] gi|316940529|gb|ADU74563.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium thermocellum DSM 1313] Length = 359 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 137/365 (37%), Positives = 210/365 (57%), Gaps = 14/365 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDARRV 79 +V+V MSGGVDSSV AA+L GY+VIG T+Q++ + +G CC+ V DAR V Sbjct: 5 KVMVGMSGGVDSSVAAAILLEQGYEVIGATMQIWPDTDEETKLVEGGCCSLSAVDDARSV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + + +YV ++++ F +VI F Y G TP PC+ CNR VKF +L+ +G D Sbjct: 65 ANKLGIPYYVLNFKDIFEKSVINYFKDEYLKGRTPNPCIACNRFVKFESMLNKALSMGID 124 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + DD K+R ++ + + ++DQ+Y L+ TQ+QL + P+G+ KE Sbjct: 125 YIATGHY---AIITYDDNKKRYLLKKSVTQQKDQTYALYNVTQEQLKHILMPIGNFTKEQ 181 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A+E+GL +A K DSQ+ICFV Y ++ G V G ILG+H GI Sbjct: 182 VRAKAKELGLYVASKPDSQEICFVNDNDYGKFIEENTDKEIKPGYFVDTKGNILGKHRGI 241 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 I+YT+GQR+GLG+A+G+P++VV +D ++ V++G + + ++N++ E+ Sbjct: 242 IHYTVGQRKGLGIALGKPMYVVRIDAENNTVVLGDENEVYSKELTAYDLNFISIDKLEEP 301 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + KIR S + +DG V V F+ + V GQ+ VFY D V+ Sbjct: 302 M----RVKAKIRYSAKEADAVIYPLEDGKVRVVFDTPQRAVTPGQSVVFYDGDI----VV 353 Query: 379 GGGII 383 GGGII Sbjct: 354 GGGII 358 >gi|291526521|emb|CBK92108.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium rectale DSM 17629] Length = 362 Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 141/365 (38%), Positives = 204/365 (55%), Gaps = 15/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ K+ +G CC V DARRV Sbjct: 4 KVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDVFKQSQEGGCCGLSAVEDARRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +++ +YV +++ F+ VI F S Y TP PC+ CNR VK+ LL + ++GAD Sbjct: 64 AAVLDIPYYVMNFKADFKKYVIDYFVSEYERAYTPNPCIACNRYVKWESLLHRSLEIGAD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + R + + E+DQ+Y L+ TQ+QL P+G+ +K Sbjct: 124 YIATGHYAR----IAQLPNGRYTIANSVTAEKDQTYALYNLTQEQLRRTLMPVGEYEKPQ 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R +A E GL +A KSDSQDICFV Y ++ G+ V +G ILGRH G+ Sbjct: 180 IRRIAEEAGLPVAHKSDSQDICFVPDHDYASFIENETGKTYEPGNFVDESGNILGRHKGL 239 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 I+YTIGQR+GLG+ PLFV L ++ V++ ESL Y+ +IN++ ++ Sbjct: 240 IHYTIGQRKGLGITAATPLFVKELRPATNEVVISTNESLFSDTCYISDINYMA----QEH 295 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + G + K+R S + ++G + F++ + + GQA VFY + VL Sbjct: 296 ITPGTRSIGKVRYSHRGADCTLTPMENGMIKCVFDEPQRAMTPGQAAVFY----QDGHVL 351 Query: 379 GGGII 383 GG I Sbjct: 352 CGGTI 356 >gi|22299799|ref|NP_683046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermosynechococcus elongatus BP-1] gi|30173409|sp|Q8CWM0|MNMA_THEEB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|22295983|dbj|BAC09808.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Thermosynechococcus elongatus BP-1] Length = 369 Score = 251 bits (641), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 148/365 (40%), Positives = 208/365 (56%), Gaps = 24/365 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV +SGGVDSSV A LK G+ V+G+TL L K KG CC+ + + DA R+C+ Sbjct: 7 VVVGLSGGVDSSVAIASLKAQGHPVVGLTLWLM------KGKGQCCS-EGLVDAARLCEQ 59 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADVL 141 + V H++ D E F ++ S YA G TPLPC CNR VKF +L+ +R QLG D + Sbjct: 60 LGVPHHIVDSREIFEKYIVNYLISGYANGVTPLPCSQCNRLVKFGPMLAYSREQLGIDYI 119 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + + D R + R +D +DQSYFL+ Q+ L + FPLG K R Sbjct: 120 ATGHYAQVKYNPTSD---RYELWRAVDRHKDQSYFLYDLPQEILAHVLFPLGQQTKAETR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 LA + GL A K +SQD+C ++ G + + +G+IV + G++LG H GI Sbjct: 177 ALAAQYGLPTASKPESQDLCLIEAHGSMRQFLDQYLP--RQQGEIVDVYGRVLGYHQGIH 234 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +YTIGQR+GLG+A EPL+VV LD+ +RVIVG R + + +NW+ ++ + Sbjct: 235 HYTIGQRKGLGIAAPEPLYVVALDREHNRVIVGDRATAGRRECTVARVNWVSIPPPKEPM 294 Query: 321 VDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 V+IR PVPV + N + V ++F + + GV GQA V+Y D R+L Sbjct: 295 T----ATVQIRYRTPPVPVTIIPDANAEQVQLEFAEPQFGVTPGQAAVWYAGD----RLL 346 Query: 379 GGGII 383 GGGII Sbjct: 347 GGGII 351 >gi|326390968|ref|ZP_08212518.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter ethanolicus JW 200] gi|325993010|gb|EGD51452.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter ethanolicus JW 200] Length = 376 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 144/380 (37%), Positives = 220/380 (57%), Gaps = 17/380 (4%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKG 65 RL + + KN RVVV MSGGVDSSV A LLK G+DVIGVT+Q++ + +A + +G Sbjct: 7 RLKNFFMKKNN---RVVVGMSGGVDSSVSAYLLKEQGFDVIGVTMQIWQDKDEEAVRVEG 63 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 CC+ V DARRV + I + +YV ++++ F+ VI F Y G TP PC+ CN+ +K Sbjct: 64 GCCSLSAVNDARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLKGRTPNPCIACNKYIK 123 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F +LL + A +ATGHY D+ +RR ++ + +D +DQ+Y L+ TQ QL Sbjct: 124 FEELLKRAWMIDAYYVATGHYAIKEY---DEERRRYLLKKSVDTSKDQTYVLYNLTQTQL 180 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 + FPLG KK+ VR+LA+ +GL +A K DSQ+ICFV Y ++ G+ Sbjct: 181 EHILFPLGKYKKDEVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEF 240 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 G+ LG H GII+YTIGQR+GLG+++G+PL+VV +D ++ V++G + + + Sbjct: 241 RDTRGRFLGYHKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVFGDEL-- 298 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364 I++ + + D + + KIR + ++ +DG V+V F+ + + GQ+ Sbjct: 299 --ISYNNNFISIDKLEGEMRVKAKIRYTAKEQDAVIRPLEDGRVFVKFDNPQRAITPGQS 356 Query: 365 CVFYTSDSNEARVLGGGIIS 384 VFY D V+GGG I Sbjct: 357 VVFYDGDI----VVGGGTIE 372 >gi|307265916|ref|ZP_07547465.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter wiegelii Rt8.B1] gi|306919085|gb|EFN49310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter wiegelii Rt8.B1] Length = 376 Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 144/386 (37%), Positives = 221/386 (57%), Gaps = 17/386 (4%) Query: 2 VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--K 59 ++ RL +L + KN RVVV MSGGVDSSV A LLK GY+VIGVT+Q++ + + Sbjct: 1 MIESTRRLENLSMQKNN---RVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDKDEE 57 Query: 60 ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119 A + +G CC+ V DARRV + I + +YV ++++ F+ VI F Y G TP PC+ Sbjct: 58 AVRVEGGCCSLSAVNDARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLKGRTPNPCIA 117 Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 CN+ +KF +LL + A +ATGHY D+ + R ++ + +D +DQ+Y L+ Sbjct: 118 CNKYIKFEELLKRAWMIDAYYVATGHYAIKEY---DEERGRYLLKKSVDTSKDQTYVLYN 174 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 TQ QL + FPLG KK+ VR LA+ +GL +A K DSQ+ICFV Y ++ Sbjct: 175 LTQTQLEHILFPLGKYKKDEVRKLAQNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEE 234 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE 299 G+ G+ LG H GII+YTIGQR+GLG+++G+PL+VV +D ++ V++G + + Sbjct: 235 IKPGEFRDTRGRFLGYHKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVF 294 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVG 358 + I++ + + D + + KIR + ++ +DG V+V F+ + Sbjct: 295 GDEL----ISYNNNFISIDKLEGEMRVKAKIRYTAKEQDAVIRPLEDGRVFVKFDNPQRA 350 Query: 359 VASGQACVFYTSDSNEARVLGGGIIS 384 + GQ+ VFY D V+GGG I Sbjct: 351 ITPGQSVVFYDGDI----VVGGGTIE 372 >gi|37520120|ref|NP_923497.1| tRNA-specific 2-thiouridylase MnmA [Gloeobacter violaceus PCC 7421] gi|73920124|sp|Q7MBC9|MNMA_GLOVI RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|35211112|dbj|BAC88492.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Gloeobacter violaceus PCC 7421] Length = 357 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 148/373 (39%), Positives = 216/373 (57%), Gaps = 26/373 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++V A+SGGVDSSV AAL+++ GY V GVTL L + KGSCC+ + DA RVC+ Sbjct: 6 KIVAALSGGVDSSVAAALVRKQGYRVCGVTLWLM------RGKGSCCS-DGMKDAARVCE 58 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140 +++ H++ D ++F ++ Y G TPLPC CN+ +KF LL R +LG Sbjct: 59 QLDIPHHIVDIRQQFEETIVDFLVEGYREGITPLPCSRCNKELKFGLLLEYARRKLGIGT 118 Query: 141 LATGHYIRSRLYVGDDGKR-RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R+ G DG+ R + R +D +DQSYFL+ +Q+QL FPLG+M K+ Sbjct: 119 VATGHYART----GFDGQTGRHWLARAVDRTKDQSYFLYDLSQEQLASAVFPLGEMTKDQ 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHNG 258 R LA E+GL +A K +S D+C V+ + +NA I G+IV +G+ILG H+G Sbjct: 175 TRTLAAELGLSVAHKPESMDLCLVEAAG--SMRNFLNAHIDTRRGEIVDTSGKILGEHDG 232 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 +YT+GQRRGLGVA PL+VV +D ++RV+VG RE + ++NW+ E Sbjct: 233 AHHYTVGQRRGLGVAAPYPLYVVAVDAANNRVVVGAREEATACECTVGQVNWVSMAEPEA 292 Query: 319 AVVDGFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKS-EVGVASGQACVFYTSDSNEAR 376 + + V++R PV + G + F+ + + ++ GQA V+Y + R Sbjct: 293 PI----QAEVQVRYRSQPVQATIIPLPARGARIAFDDAPQFAISPGQAAVWYAGE----R 344 Query: 377 VLGGGIISGSKRS 389 VLGGGII S RS Sbjct: 345 VLGGGIILASGRS 357 >gi|18310765|ref|NP_562699.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium perfringens str. 13] gi|18145446|dbj|BAB81489.1| probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium perfringens str. 13] Length = 350 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 138/360 (38%), Positives = 206/360 (57%), Gaps = 15/360 (4%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARRVCDTINV 85 MSGGVDSSV A LLK GYDVIGVT+Q++ K +R+G CC+ V DARRV +++ Sbjct: 1 MSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARRVAQKLDI 60 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145 YV ++ + F+ VI F Y G TP PC+ CN+ +KF +LL + +GAD +ATGH Sbjct: 61 PFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGADYVATGH 120 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y + G R + R D +DQ+Y L+ TQ+QL P G+ K+ +R++A+ Sbjct: 121 YAKIEERDG-----RFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKDKIREIAK 175 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 E+GLD+ +K DS++ICF+ + + G+ V G +LG+H GI+ YTIG Sbjct: 176 EIGLDVHNKKDSEEICFIPDNNHGRYICEAAPNKVRPGNFVDKYGNVLGKHKGIVYYTIG 235 Query: 266 QRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFK 325 QR+GLG+A+G P+FV ++ ++ V+VGP E + + ++IN++ E + + Sbjct: 236 QRKGLGLALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISIDKLEGPM----E 291 Query: 326 CFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 KIR S P + ++G V V FE + + GQ+ VFY D V+GGGII Sbjct: 292 VEAKIRYSARPAKATISPMENGRVKVSFEDKQRAITKGQSVVFYKDD----LVVGGGIIE 347 >gi|170755439|ref|YP_001780808.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum B1 str. Okra] gi|205810574|sp|B1IIY2|MNMA2_CLOBK RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|169120651|gb|ACA44487.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum B1 str. Okra] Length = 356 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 139/365 (38%), Positives = 210/365 (57%), Gaps = 15/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LLK GY+VIGVT+Q++ + + +++G CC+ V DARRV Sbjct: 4 KVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARRVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + I + YV ++++ F+ VI F Y G TP PC+ CN+ +KFS L +G D Sbjct: 64 NKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAMGIDY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + + R I+ + D +DQ+Y L+ TQ QL P G KK + Sbjct: 124 VATGHYA-----IIEKHNDRYIIKKSEDDRKDQTYALYNLTQFQLERTLMPCGQYKKSKI 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+E+GL + +K DS++ICF+ + +K EG+ V G ILG H GI+ Sbjct: 179 REIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNILGTHKGIV 238 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQR+GLG+A G+P++VV ++ + V++G E L + ++IN++ D + Sbjct: 239 YYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDINYIP----FDTL 294 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 D + KIR SQ P + +DG V V+F + + + GQ+ VFY D ++G Sbjct: 295 KDPMEVEAKIRYSQTPSKAIITPIEDGRVRVNFHEKQRAITKGQSVVFYKDD----LLIG 350 Query: 380 GGIIS 384 GGII Sbjct: 351 GGIIE 355 >gi|160892535|ref|ZP_02073325.1| hypothetical protein CLOL250_00064 [Clostridium sp. L2-50] gi|156865576|gb|EDO59007.1| hypothetical protein CLOL250_00064 [Clostridium sp. L2-50] Length = 362 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 146/365 (40%), Positives = 204/365 (55%), Gaps = 17/365 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDARRVC 80 V V MSGGVDSSV A LLK GY+VIGVT+Q++ A + G CC V DARRV Sbjct: 6 VCVGMSGGVDSSVAAYLLKEQGYNVIGVTMQIWQDEDADQISEHGGCCGLSAVDDARRVA 65 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + +YV +++E FR VI F Y G TP PC+ CNR VK+ LL + +G D Sbjct: 66 AQLEIPYYVMNFKEDFRKYVIDYFVDEYRNGRTPNPCIACNRYVKWESLLRRSLSIGGDY 125 Query: 141 LATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R +L G R + +E+DQ+Y L+ TQ QL P+G+ K Sbjct: 126 IATGHYARVEQLSSG-----RYTLRVAKGIEKDQTYALYNLTQDQLSKTLMPVGEYNKTQ 180 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R +A ++G+ +A+K DSQDICFV G Y ++R A+ G+ V +NG++LG H GI Sbjct: 181 IRQIAADIGIQVANKPDSQDICFVPDGDYAGYLEREEGLKAVPGNFVDMNGKVLGTHKGI 240 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 I+YTIGQR+GLG+AMG P+FVV + ++ V++G + + N++ E Sbjct: 241 IHYTIGQRKGLGLAMGHPVFVVDIIPETNEVVIGENADTFSKELIADKTNFMSVERPE-- 298 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 DG + KIR + P + D D V V F++ GQA VFY D ++ Sbjct: 299 --DGMQVIGKIRYAHKGAPCRIYMLDADRVRVVFDEPVRAATKGQAVVFYEDD----HIV 352 Query: 379 GGGII 383 GGG I Sbjct: 353 GGGTI 357 >gi|225174584|ref|ZP_03728582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dethiobacter alkaliphilus AHT 1] gi|225169711|gb|EEG78507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dethiobacter alkaliphilus AHT 1] Length = 366 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 148/375 (39%), Positives = 212/375 (56%), Gaps = 16/375 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS---RKASKRKG-SCCAGQDVY 74 K+ RV+VAMSGGVDSS+ AALLK GY+ IGVT++L+ S +K G CC+ V Sbjct: 3 KNNRVLVAMSGGVDSSLCAALLKEQGYEAIGVTMRLWVSPDFEDEAKHSGRGCCSLSAVD 62 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DARRV D + + YV +++E FR V+ F Y G TP PC+ CNR +KF LL Sbjct: 63 DARRVADKMEMPFYVLNFKESFRTQVVDYFVDEYRRGRTPNPCIACNRYLKFDLLLKKAF 122 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 +L A +ATGHY R D+ R + + D +DQ+Y L+ TQ+QL FPLG Sbjct: 123 ELEAWYVATGHYARVEY---DESLERFRLKKAADARKDQTYTLYNLTQKQLAHTLFPLGG 179 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 K VR++A + GL +ADK DSQ+ICF+ Y ++ + G I+ L+G LG Sbjct: 180 FLKSEVREMAAKYGLAVADKPDSQEICFIPDDDYKRFLREETDVESKPGPILDLDGNRLG 239 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H G++NYT+GQR+GLG+A+G P+FVV LD ++ +IVG + + ++N+ Sbjct: 240 THQGLVNYTVGQRKGLGIAVGRPIFVVELDVENNTLIVGDDRDVFFRALVADDLNF---- 295 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + D + + + KIR VP + G ++F++ E V GQ+ VFY D Sbjct: 296 ILIDELKEPRRVMAKIRYHAKEVPALLSPLPHGQAKLEFDEPERAVTPGQSVVFYEGDD- 354 Query: 374 EARVLGGGIISGSKR 388 V+GGGII + R Sbjct: 355 ---VVGGGIIQQAIR 366 >gi|283795899|ref|ZP_06345052.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium sp. M62/1] gi|291076535|gb|EFE13899.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium sp. M62/1] Length = 359 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 139/367 (37%), Positives = 205/367 (55%), Gaps = 18/367 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK+ GYDVIGVT+Q++ + A + G CC V DARRV Sbjct: 5 KVVVGMSGGVDSSVAAWLLKKQGYDVIGVTMQIWQDEEPEAVEENGGCCGLSAVDDARRV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + + +YV ++++ FR V+ F + Y G TP PC+ CNR VK+ LL + ++GAD Sbjct: 65 AEDLAIPYYVMNFKKEFRENVMDYFVAEYLRGRTPNPCIACNRFVKWESLLKRSLEIGAD 124 Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R +L G R + + +DQ+Y L+ TQ+QL P+G+ K+ Sbjct: 125 YIATGHYARIEKLPNG-----RYALKKSATAAKDQTYALYNLTQEQLAHTLMPVGEYTKD 179 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R +A+E+ L +A K DSQ+ICF+ Y ++ EG+ V L G +LGRH G Sbjct: 180 EIRKMAQELNLRVAHKPDSQEICFIPDNDYAKFIREDIGKELPEGNFVDLQGNVLGRHKG 239 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFE 317 I +YT+GQR+GL ++MG P+FVV + ++ V++G + + INW+ DGL Sbjct: 240 ITHYTVGQRKGLNLSMGHPVFVVEIRPETNEVVIGENSDVFSRTLRFNRINWMAVDGLHG 299 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + KIR P V+ D F++ + + GQA V Y + Sbjct: 300 EE----HRFIAKIRYGHKGAPCTVREIGSDLAECVFDEPQRAITPGQAVVLYDGEY---- 351 Query: 377 VLGGGII 383 V GGG I Sbjct: 352 VAGGGTI 358 >gi|220917573|ref|YP_002492877.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaeromyxobacter dehalogenans 2CP-1] gi|219955427|gb|ACL65811.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaeromyxobacter dehalogenans 2CP-1] Length = 351 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 155/364 (42%), Positives = 203/364 (55%), Gaps = 13/364 (3%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR++VAMSGGVDSS AALL G++VIGVT+++ + ++ + SCCA DV DAR Sbjct: 1 MRILVAMSGGVDSSTAAALLAGHGHEVIGVTMRVADYSDVARGR-SCCAPDDVEDARAAA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + YV + E RFR VI F Y G TP PCV CN VKF LL+ R LGA Sbjct: 60 RRLGIPFYVANVEARFRERVIDRFVDDYVEGRTPNPCVACNTEVKFDWLLARARALGAK- 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R V + G RR ++ D +DQSYFL+ Q L D+ FP+G + K V Sbjct: 119 LATGHYAR----VEERGGRRALLT-AADPAKDQSYFLYGLGQDALRDVLFPVGALAKPVV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R A GL +ADK DSQ+ICFV +G D V G+IV G++LGRH+G+ Sbjct: 174 RAEAARAGLAVADKPDSQEICFVTRGDAGDFVALRAPARIRAGEIVSTAGEVLGRHDGVH 233 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +T+GQRRGLG+A P +VV LD ++RV+VG E R +RE +W+ G Sbjct: 234 RFTVGQRRGLGIAGAVPRYVVRLDAATARVVVGSAEEASRDRFEVREASWV-SGAPPAGP 292 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 V+ + V+ R + V G V + GVA GQA VFY D V+GG Sbjct: 293 VE-LRVKVRHRHEGERGTVRAVSGGAGADVRLARPVRGVAPGQAAVFYAGDE----VVGG 347 Query: 381 GIIS 384 G I+ Sbjct: 348 GRIA 351 >gi|300868100|ref|ZP_07112736.1| tRNA-specific 2-thiouridylase mnmA [Oscillatoria sp. PCC 6506] gi|300333898|emb|CBN57914.1| tRNA-specific 2-thiouridylase mnmA [Oscillatoria sp. PCC 6506] Length = 352 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 148/366 (40%), Positives = 214/366 (58%), Gaps = 25/366 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++VV +SGGVDSS AA+L GY+V+G+TL L K KG CC+ + + DA ++C+ Sbjct: 3 KIVVGLSGGVDSSTAAAILHHQGYEVVGLTLWLM------KGKGQCCS-EGMVDAAQICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + H + D + F+ +++ Y AG TPLPC CNRTVKF +L R+ LG + Sbjct: 56 QLGIPHEIVDSRDLFQASIVDYLVEGYGAGITPLPCSQCNRTVKFGPMLRYAREKLGIEK 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCR-PMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + + DG R R +D +DQSYFL+ TQ+ L FPLGD+ K Sbjct: 116 IATGHYAQ----ISYDGSVDRYQLRRAVDSTKDQSYFLYDLTQEMLAGSVFPLGDIAKTE 171 Query: 200 VRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R +A E GL ADK++SQD+C V+ G + + A L+GDIV +G++LG+H+G Sbjct: 172 TRRIAAEFGLKTADKAESQDLCLVESNGSMRAFLDKYIA--PLKGDIVDKDGRVLGQHDG 229 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I +YTIGQR+GLG+A EPL+V+ LD +RVIVG R S + + +NW+ + E Sbjct: 230 IQHYTIGQRKGLGIAWAEPLYVIGLDVARNRVIVGDRASAAQNECIVNRVNWV--SIAEP 287 Query: 319 AVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + V+IR PVPV + D V + F++ + G+ GQ V+Y D + Sbjct: 288 GAP--IRAEVQIRYRSHPVPVSVIPLPDARVKLIFDEPQFGITPGQGAVWYDGDI----L 341 Query: 378 LGGGII 383 LGGGII Sbjct: 342 LGGGII 347 >gi|163846255|ref|YP_001634299.1| tRNA-specific 2-thiouridylase MnmA [Chloroflexus aurantiacus J-10-fl] gi|222524010|ref|YP_002568480.1| tRNA-specific 2-thiouridylase MnmA [Chloroflexus sp. Y-400-fl] gi|205811637|sp|A9WFH2|MNMA_CHLAA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|254811449|sp|B9LK98|MNMA_CHLSY RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|163667544|gb|ABY33910.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chloroflexus aurantiacus J-10-fl] gi|222447889|gb|ACM52155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chloroflexus sp. Y-400-fl] Length = 359 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 154/363 (42%), Positives = 218/363 (60%), Gaps = 13/363 (3%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V+VAMSGGVDSS+ AALL G+ V GVT+ L++ + R+ CCA + ARRVC Sbjct: 4 VLVAMSGGVDSSLAAALLLEAGHQVTGVTMHLWDDDEQGLRESLCCAAEAAASARRVCAL 63 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + YVF+Y+ FR VI F +Y G TP PCV+CNR +KF LL R LG D +A Sbjct: 64 LGIPFYVFNYQREFRRHVIDYFIRAYTHGLTPNPCVECNRMIKFRALLDRARTLGFDAVA 123 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY +R+ G+DG+ + + R +DLE+DQSY L Q +L L FP+G K VR+ Sbjct: 124 TGHY--ARIIQGEDGRYQ--LWRAVDLEKDQSYMLHMLGQAELSRLIFPIGAYTKREVRE 179 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A GL AD+ +SQDICFV G Y ++++ + + G IV L G+ +GRH G+ Y Sbjct: 180 MAAARGLPSADREESQDICFVPDGDYRNLLRIESPESLVPGPIVDLEGREIGRHRGLPLY 239 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 T+GQRRGLG+ GEP +VV +D + +IVGP +L R + + W+ D + Sbjct: 240 TVGQRRGLGLGGGEPRYVVAIDPARNALIVGPAAALNRARFTVIDACWVDDA----PPAE 295 Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 F C V++R+ +P+P V + DG + V+ E+ + V+ GQA VFY +VLGGG Sbjct: 296 SFTCLVQVRAHAEPLPARVSQQPDGRWLVELERPQRAVSPGQAAVFYRGQ----QVLGGG 351 Query: 382 IIS 384 I+ Sbjct: 352 WIA 354 >gi|20808819|ref|NP_623990.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Thermoanaerobacter tengcongensis MB4] gi|24638308|sp|Q8R7F0|MNMA2_THETN RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|20517470|gb|AAM25594.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Thermoanaerobacter tengcongensis MB4] Length = 364 Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 216/369 (58%), Gaps = 14/369 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDA 76 K+ RVVV MSGGVDSSV A LLK GY+VIGVT+Q++ + +A + +G CC+ V DA Sbjct: 3 KNNRVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDKDEEAVRVEGGCCSLAAVNDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV + I + +YV ++++ F+ VI F Y G TP PC+ CN+ +KF +LL + Sbjct: 63 RRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNKYIKFEELLKRAWMI 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 A +ATGHY D+ + R ++ + +D +DQ+Y L+ TQ QL + FPLG K Sbjct: 123 DAYYVATGHYAIKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKYK 179 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ VR+LA+ +GL +A K DSQ+ICFV Y ++ G+ G+ LG H Sbjct: 180 KDKVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGYH 239 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GII+YTIGQR+GLG+++G+PL+VV +D ++ V++G + + + I++ + + Sbjct: 240 KGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVYGDEL----ISYNNNFIS 295 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375 D + + KIR + ++ +DG V+V F+ + + GQ+ VFY D Sbjct: 296 IDKLEKEMRVKAKIRYTAKEQDAVIRPLEDGRVFVKFDNPQRAITPGQSVVFYDGDI--- 352 Query: 376 RVLGGGIIS 384 V+GGGII Sbjct: 353 -VVGGGIIE 360 >gi|291459813|ref|ZP_06599203.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oribacterium sp. oral taxon 078 str. F0262] gi|291417603|gb|EFE91322.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oribacterium sp. oral taxon 078 str. F0262] Length = 363 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 148/366 (40%), Positives = 205/366 (56%), Gaps = 14/366 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGSCCAGQDVYDARRVC 80 + +VAMSGGVDSSV AAL+K GYD IGVT++LY R GSCC +D DAR+ Sbjct: 4 KALVAMSGGVDSSVAAALMKERGYDCIGVTMKLYEKEGGGTCRVGSCCTAEDAEDARQAA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + +YVF++ F VI FA +Y G TP PC+DCNR +K L R+LG D Sbjct: 64 SVLGIPYYVFNFTGDFEREVIRRFAETYLKGGTPNPCIDCNRYMKHRRLYQRARELGFDS 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199 +ATGHY R D G+ R ++ + + +DQSY L+ +Q+QL FPLGD + KE Sbjct: 124 IATGHYARVSF---DAGRGRWLLKKARNAAKDQSYVLYFLSQEQLSHSVFPLGDFETKEE 180 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR+LA ++ A K DSQDICFV +G Y D ++ G+ V G+ILGRH GI Sbjct: 181 VRELAEKLHFLNARKRDSQDICFVTEGDYGDFLESYLGRSFPPGNFVDEEGRILGRHRGI 240 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 + YTIGQR+GLG+++ P++V D + V + E L + + NW+ L++ + Sbjct: 241 VRYTIGQRKGLGLSLEAPMYVYEKDLLKNEVYLTRGEKLYQKELIADDFNWI---LYDPS 297 Query: 320 VVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + G K R VP + DG V V F++ E A GQA V Y ++ V Sbjct: 298 EIKGAIPVTAKSRYRAKEVPAEAELLPDGRVRVRFQEPERAPAIGQAIVLYEGEN----V 353 Query: 378 LGGGII 383 +GGG I Sbjct: 354 VGGGTI 359 >gi|225388352|ref|ZP_03758076.1| hypothetical protein CLOSTASPAR_02087 [Clostridium asparagiforme DSM 15981] gi|225045595|gb|EEG55841.1| hypothetical protein CLOSTASPAR_02087 [Clostridium asparagiforme DSM 15981] Length = 361 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 146/366 (39%), Positives = 209/366 (57%), Gaps = 18/366 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDARRVC 80 VVV MSGGVDSSV A LLK+ GY VIGVT+Q++ + +G CC V DARRV Sbjct: 8 VVVGMSGGVDSSVAAYLLKQQGYRVIGVTMQIWQDEDGDVQEEQGGCCGLSAVDDARRVA 67 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + +YV ++++ FR V+ FA Y G TP PC+ CNR VK+ LL + +GAD Sbjct: 68 MQLEIPYYVMNFKQEFREHVMDYFAGEYLEGRTPNPCIACNRYVKWESLLRRSIAIGADY 127 Query: 141 LATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R RL G R + R + +DQ+Y L+ TQ+QL P+G K+ Sbjct: 128 IATGHYARIERLENG-----RFALRRSVTEAKDQTYALYNLTQEQLSRTLMPVGSYHKDE 182 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R +A E+GL++A K DSQ+ICFV Y ++ EG+ V L+G +LGRH GI Sbjct: 183 IRRMAEEIGLNVAHKPDSQEICFVPDKDYASFIEDYTGKSCPEGNFVDLHGNVLGRHKGI 242 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFED 318 +YT+GQR+GL ++MG P+FVV + +++ V++G E + + + ++NW+ DGL Sbjct: 243 SHYTVGQRKGLNLSMGRPVFVVEIRPDTNEVVIGEGEDVFTNILRCSKLNWMAVDGLHGG 302 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + KIR S ++ +D V F++ V GQA VFYT D V Sbjct: 303 RL----RVDAKIRYSHRGAACTIREIGEDLVECVFDEPVRAVTPGQAVVFYTGDY----V 354 Query: 378 LGGGII 383 GGG I Sbjct: 355 AGGGTI 360 >gi|269926148|ref|YP_003322771.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Thermobaculum terrenum ATCC BAA-798] gi|269789808|gb|ACZ41949.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Thermobaculum terrenum ATCC BAA-798] Length = 355 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 148/362 (40%), Positives = 204/362 (56%), Gaps = 17/362 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRVC 80 VVVAMSGGVDSSV AA+L+ GYDVIGV L+LY+ +A CC + DA VC Sbjct: 4 VVVAMSGGVDSSVAAAMLRDQGYDVIGVNLRLYSKEDSQAYSLNKQCCTLDSMRDAEAVC 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + Y + E F V+ F S Y G+TP PC+ CN +KF L LGAD Sbjct: 64 RKLGIPFYALNMEREFTRDVVDYFVSEYLQGKTPNPCLACNAHIKFHHLFERAMALGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY +RL + G + + +D +DQSY L+ +Q++L P+G+ K Sbjct: 124 IATGHY--ARLRRTESGVK---LLTGVDAAKDQSYTLYMLSQRELERTLLPIGEQTKAET 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R+LAR+ GL A+K +SQDICF+ G Y V+R+ G IV +G+ LG H+G+ Sbjct: 179 RELARKYGLVTANKPESQDICFIPSGDYRAFVRRLAPHAESPGPIVDTSGRQLGVHHGVA 238 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQR+GLG+ +G+P++VV LD + V+VG +E L I L ++N++ DG Sbjct: 239 FYTIGQRKGLGITVGKPMYVVRLDPEKNMVVVGTKEELSSREIRLCDVNYI-DG---SPR 294 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + F+C VK+R +P V DD V V+ VA GQA VFY + VLG Sbjct: 295 TEAFECEVKLRYRGASIPAIVHPEDDRSVRVEL-LGPGNVAPGQAVVFYQGEE----VLG 349 Query: 380 GG 381 GG Sbjct: 350 GG 351 >gi|255283411|ref|ZP_05347966.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bryantella formatexigens DSM 14469] gi|255266059|gb|EET59264.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bryantella formatexigens DSM 14469] Length = 357 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 141/366 (38%), Positives = 205/366 (56%), Gaps = 17/366 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDV+GVT+Q++ + + G CC V DARRV Sbjct: 4 KVVVGMSGGVDSSVAAWLLKEQGYDVVGVTMQIWQDEEEQTQEENGGCCGLSAVEDARRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 T+ + +YV +++ F+ V+ FA Y G TP PC+ CNR VK+ LL + +GAD Sbjct: 64 AQTLEIPYYVMNFKAEFKEKVMDYFAQEYLCGRTPNPCIACNRYVKWEALLQRSLAIGAD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R G R +CR +DQ+Y L+ TQ+QL P+G+ KE Sbjct: 124 YIATGHYARIRQLPGG----RYTICRSATAAKDQTYALYNLTQEQLAHTLMPVGEYTKEE 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R +A ++GL +A+K DSQ+ICFV Y ++ G+ V +G +LG+H GI Sbjct: 180 IRGIAEKIGLRVANKPDSQEICFVPDDDYASFIEEYTGREMPAGNFVTADGTVLGQHRGI 239 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQRRGL + MG +FV + ++ V++G E L R+ ++N++ Sbjct: 240 THYTIGQRRGLQLPMGHRVFVTDIRPETNEVVIGENEELFKRRLLANKLNFM-----SVP 294 Query: 320 VVDG-FKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 +DG + KIR + P ++ D V F++ + + GQA VFY ++ V Sbjct: 295 EIDGDTRVTAKIRYNHRGAPATIRMAGPDMVECIFDEPQRAMTPGQAVVFYDGEN----V 350 Query: 378 LGGGII 383 LGGG I Sbjct: 351 LGGGTI 356 >gi|218248292|ref|YP_002373663.1| tRNA-specific 2-thiouridylase MnmA [Cyanothece sp. PCC 8801] gi|226704769|sp|B7K1G5|MNMA_CYAP8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|218168770|gb|ACK67507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cyanothece sp. PCC 8801] Length = 349 Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 150/366 (40%), Positives = 208/366 (56%), Gaps = 25/366 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV AA+L GY+VIG+TL L K KG CC+ + + DA +C+ Sbjct: 3 KVVVGLSGGVDSSVAAAVLHHQGYEVIGLTLWLM------KGKGQCCS-EGMVDAAFICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + H++ D + F+ ++ S Y AG TPLPC CNR VKF +L+ RQ LG D Sbjct: 56 QLGIPHHIVDSRDVFQANIVNYLVSGYEAGITPLPCSQCNRAVKFGPMLNYARQELGCDR 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R D+ +R + R +D +DQSYFL+ +Q+ L FPLGD KE Sbjct: 116 IATGHYARIRY---DEISQRYQLLRAIDRNKDQSYFLYDLSQEMLAGTVFPLGDQTKEDT 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVV--KRINAGIALEGDIVHLNGQILGRHNG 258 R +A E L A K +SQD+C ++ + I+ EGDIV L G++LG+H G Sbjct: 173 RRIAAEFDLKTASKPESQDLCLIEAHGSMKTFLDQYIHQK---EGDIVDLEGKVLGKHQG 229 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I +YTIGQR+GLGVA EPL+VV LD ++VIV R + + +NW+ Sbjct: 230 IHHYTIGQRKGLGVAAPEPLYVVKLDPIMNQVIVANRANAGRSDCTVTRLNWVSIA---- 285 Query: 319 AVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 A + +IR VPV + D+ V + F++ E G+ GQA VFY + + Sbjct: 286 APSTPIRVETQIRYRSSAVPVDLIPLEDNRVKLVFDEPEFGITPGQAAVFYDGEI----L 341 Query: 378 LGGGII 383 LGGGII Sbjct: 342 LGGGII 347 >gi|291527010|emb|CBK92596.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium rectale M104/1] Length = 362 Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 141/365 (38%), Positives = 203/365 (55%), Gaps = 15/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ K+ +G CC V DARRV Sbjct: 4 KVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDVFKQSQEGGCCGLSAVEDARRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +++ +YV +++ F+ VI F S Y TP PC+ CNR VK+ LL + ++GAD Sbjct: 64 AAVLDIPYYVMNFKADFKKYVIDYFVSEYERAYTPNPCIACNRYVKWESLLHRSLEIGAD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + R + + E+DQ+Y L+ TQ+QL P+G+ +K Sbjct: 124 YIATGHYAR----IAQLPNGRYTIANSVTAEKDQTYALYNLTQEQLRRTLMPVGEYEKPQ 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R +A E GL +A KSDSQDICFV Y ++ G+ V +G ILGRH G+ Sbjct: 180 IRRIAEEAGLPVAHKSDSQDICFVPDHDYASFIENETGKTYEPGNFVDESGNILGRHKGL 239 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 I+YTIGQR+GLG+ PLFV L ++ V++ ESL Y+ +IN++ +D Sbjct: 240 IHYTIGQRKGLGITAATPLFVKELRPATNEVVISTNESLFSDTCYISDINYMA----QDH 295 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + K+R S + ++G + F++ + + GQA VFY + VL Sbjct: 296 ITPDTRSIGKVRYSHRGADCTLTPMENGMIKCVFDEPQRAMTPGQAAVFY----QDGHVL 351 Query: 379 GGGII 383 GG I Sbjct: 352 CGGTI 356 >gi|295091002|emb|CBK77109.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium cf. saccharolyticum K10] Length = 359 Score = 249 bits (637), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 139/367 (37%), Positives = 205/367 (55%), Gaps = 18/367 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK+ GYDVIGVT+Q++ + A + G CC V DARRV Sbjct: 5 KVVVGMSGGVDSSVAAWLLKKQGYDVIGVTMQIWQDEEPEAVEENGGCCGLSAVDDARRV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + + +YV ++++ FR V+ F + Y G TP PC+ CNR VK+ LL + ++GAD Sbjct: 65 AEDLAIPYYVMNFKKEFRENVMDYFVAEYLRGRTPNPCIACNRFVKWESLLKRSLEIGAD 124 Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R +L G R + + +DQ+Y L+ TQ+QL P+G+ K+ Sbjct: 125 YIATGHYARIEKLPNG-----RYALKKSATAAKDQTYALYNLTQEQLAHTLMPVGEYTKD 179 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R +A+E+ L +A K DSQ+ICF+ Y ++ EG+ V L G +LGRH G Sbjct: 180 EIRKMAQELNLRVAHKPDSQEICFIPDNDYARFIREDIGKELPEGNFVDLQGNVLGRHKG 239 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFE 317 I +YT+GQR+GL ++MG P+FVV + ++ V++G + + INW+ DGL Sbjct: 240 ITHYTVGQRKGLNLSMGHPVFVVEIRPETNEVVIGENSDVFSRTLRFNRINWMAVDGLHG 299 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + KIR P V+ D F++ + + GQA V Y + Sbjct: 300 EE----HRFIAKIRYGHKGAPCTVREIGSDLAECVFDEPQRAITPGQAVVLYDGEY---- 351 Query: 377 VLGGGII 383 V GGG I Sbjct: 352 VAGGGTI 358 >gi|288818711|ref|YP_003433059.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Hydrogenobacter thermophilus TK-6] gi|288788111|dbj|BAI69858.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Hydrogenobacter thermophilus TK-6] gi|308752298|gb|ADO45781.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Hydrogenobacter thermophilus TK-6] Length = 354 Score = 249 bits (637), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 155/368 (42%), Positives = 209/368 (56%), Gaps = 20/368 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARR 78 MRV V MSGGVDSSV A LLK G++VIGVTL+ + ++ CC+ +DV DA + Sbjct: 1 MRVAVGMSGGVDSSVSALLLKMAGHEVIGVTLRFHTIPESCSTDDLRVCCSPEDVKDAAK 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137 V + + + H FD+E F+ VI F YA G+TP PC CNR VK L R++ Sbjct: 61 VSEKLGIPHITFDWERIFKERVIDYFVQEYAEGKTPNPCAICNRDVKTGFLARYLREVAQ 120 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D LATGHY R Y G +R++ R D +DQSYFL ++ L L FPLGD+ K Sbjct: 121 VDRLATGHYARLVEYKG-----KRLIARAKDKSKDQSYFLALVRKKDLELLEFPLGDLTK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 E VR +A E L +A K DSQ++CF+ K + +K G A G I H++G++LG H Sbjct: 176 EQVRRIAVEYSLPVAQKRDSQEVCFLMGKKPGEFIKE-RVGEA-SGYIKHVSGRVLGTHT 233 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI N+TIGQRRGLGV+ EPL+VV +D ++ VIVG E + + L++IN+ L Sbjct: 234 GIYNFTIGQRRGLGVSYHEPLYVVDIDAQTNTVIVGSEELIYKSSLKLKDINF---HLHI 290 Query: 318 DAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 D G + +R V V ++ DG V+FE G+ GQ C FY D Sbjct: 291 DKW--GKDVYAVVRYRTQAVKVKDIKETKDGFVVEFETPVRGITPGQVCAFYEGDV---- 344 Query: 377 VLGGGIIS 384 +LGGGII+ Sbjct: 345 LLGGGIIA 352 >gi|307243659|ref|ZP_07525800.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Peptostreptococcus stomatis DSM 17678] gi|306492969|gb|EFM64981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Peptostreptococcus stomatis DSM 17678] Length = 350 Score = 249 bits (637), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 136/364 (37%), Positives = 214/364 (58%), Gaps = 17/364 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV++ MSGGVDSSV A LL+++GY+V+G T+ L++ + +K + DAR VC+ Sbjct: 3 RVLLGMSGGVDSSVAAFLLQKEGYEVVGATMALWDFKDGNK-------DTSIEDARVVCN 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H+V D+ E F++ V+ F Y AG+TP PCV CN+T+KF L R+LG D + Sbjct: 56 KLKIDHHVLDFREDFKDLVVDNFIDEYFAGKTPNPCVFCNKTIKFGLLFDKARELGCDYV 115 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + + + + I D +DQ+Y L+ Q++L FP+G K+++R Sbjct: 116 ATGHY--ALVDFNEKSGKYEIKKASSD-SKDQTYVLYNLNQEKLARTLFPIGKYDKDTIR 172 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 D+A+E+GL++ +K DSQDICF+ Y +K + G+ V +G++LGRH GII+ Sbjct: 173 DMAKEIGLEVHNKPDSQDICFIPDHDYEAFLKENSKKKVEVGNFVDRSGKVLGRHKGIIS 232 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQR+GLG+ G+P +VV ++ +++G + L + R++N++ +D VV Sbjct: 233 YTIGQRKGLGITFGKPTYVVAINGQDKSIVLGDNDDLFKTSLTARDVNFV--EWSQDEVV 290 Query: 322 DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 + K+R + P V V VDF + + + SGQ+ VFY+ D R+LGG Sbjct: 291 GPIDVYAKVRYAAKPAQAKVTYIGKYRVRVDFVEPQRAITSGQSVVFYSED----RLLGG 346 Query: 381 GIIS 384 GII Sbjct: 347 GIIE 350 >gi|205829096|sp|B1XM11|MNMA_SYNP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 353 Score = 249 bits (637), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 148/366 (40%), Positives = 203/366 (55%), Gaps = 25/366 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V V +SGGVDSSV A +L R GY V GVTL L K KG CC+ + + DA +C+ Sbjct: 3 KVAVGLSGGVDSSVTAGILHRQGYTVEGVTLWLM------KGKGQCCS-EGMVDAADICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140 + + H++ D + F+ ++ S Y G TPLPC CNR VKF +L + +LG D Sbjct: 56 QLGIPHHIVDSRDLFQKYIVDYVVSGYEVGVTPLPCSQCNRMVKFGPMLQWAKAELGIDQ 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R +D R + R +D +DQSYFL+ TQ+ L FPLG+M K Sbjct: 116 IATGHYARIRY---NDQTGRYELLRAVDRHKDQSYFLYDLTQEMLAGTLFPLGEMTKGET 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVV--KRINAGIALEGDIVHLNGQILGRHNG 258 R +A EM L A K +SQD+C ++ K I EG+IV L+G++LG H G Sbjct: 173 RQIAAEMQLSTAKKPESQDLCLIEAHGSMKTFLDKYIEQ---REGEIVDLDGKVLGHHTG 229 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I +YTIGQR+GLG+A EPL+VV LD +RV+V R+ ++ +NWL Sbjct: 230 IHHYTIGQRKGLGIAAPEPLYVVKLDNVMNRVVVSTRDRAGQSECTVQRMNWLA----LP 285 Query: 319 AVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + V++R VPV V D + + FE+ + G+ GQA V Y D RV Sbjct: 286 GITSPIRAEVQVRYRSGAVPVTVIPLEGDRLKLVFEEPQFGITPGQAAVLYDGD----RV 341 Query: 378 LGGGII 383 LGGGII Sbjct: 342 LGGGII 347 >gi|291531960|emb|CBK97545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium siraeum 70/3] Length = 358 Score = 249 bits (637), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 139/363 (38%), Positives = 206/363 (56%), Gaps = 13/363 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80 + V+AMSGGVDSSV A L+K+ G+D IGVT++L+ N R+ SCC+ DV D R V Sbjct: 4 KAVIAMSGGVDSSVAAYLMKQRGFDCIGVTMKLFANEDIGISREHSCCSLDDVDDVRSVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 ++++ +YVF++ +RF VI F +Y G TP PC+DCNR +KF L ++L D Sbjct: 64 YSLDMPYYVFNFSDRFETDVIDRFIHAYENGITPNPCIDCNRYLKFDKLYMRAKELDRDY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 + TGHY R V DG R ++ + +D +DQSY L+ TQ+QL FPLG M+K Sbjct: 124 VVTGHYAR----VEKDGNGRFLLKKALDDTKDQSYVLYCLTQEQLSHTIFPLGKMRKSQA 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A G A K+DSQDICFVQ G Y D +++ +GD + NG ++GRH G+I Sbjct: 180 REIAESQGFINARKADSQDICFVQNGSYADFIEQYTGKNYPDGDFLDTNGNVIGRHKGVI 239 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YT+GQR+GLG++ EPL+V ++ S+ V + + L + +IN + + Sbjct: 240 RYTVGQRKGLGISAPEPLYVKAVNPVSNTVTLSYNDGLYSSIVKAGDINLIS----VPEI 295 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 + K+R V +N + + F++ + V GQA V Y D+ V+GG Sbjct: 296 KGEMRVKAKVRYRHTEQWATVTQNGETLTAVFDEPQRAVTCGQALVLYDGDT----VVGG 351 Query: 381 GII 383 G I Sbjct: 352 GTI 354 >gi|289578840|ref|YP_003477467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter italicus Ab9] gi|289528553|gb|ADD02905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter italicus Ab9] Length = 364 Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 141/369 (38%), Positives = 216/369 (58%), Gaps = 14/369 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDA 76 K+ RVVV MSGGVDSSV A LLK GY+VIGVT+Q++ + +A + +G CC+ V DA Sbjct: 3 KNNRVVVGMSGGVDSSVSAYLLKEQGYEVIGVTMQIWQDKDEEAVRVEGGCCSLSAVNDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV + I + +YV ++++ F+ VI F Y G TP PC+ CN+ +KF +LL + Sbjct: 63 RRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNKYIKFEELLKRAWMI 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 A +ATGHY D+ + R ++ + +D +DQ+Y L+ TQ QL + FPLG K Sbjct: 123 EAYYVATGHYAIKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKYK 179 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ VR LA+++GL +A K DSQ+ICFV Y ++ G+ G+ LG H Sbjct: 180 KDEVRKLAKDLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGYH 239 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GII+YTIGQR+GLG+++G+PL+VV +D ++ V++G + + + I++ + + Sbjct: 240 KGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVYGDEL----ISYNNNFIS 295 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375 D + + KIR + ++ +DG V+V F+ + + GQ+ VFY D Sbjct: 296 IDKLEGEMRVKAKIRYTAKEQDAVIRPLEDGKVFVKFDSPQRAITPGQSVVFYDGDI--- 352 Query: 376 RVLGGGIIS 384 V+GGGII Sbjct: 353 -VVGGGIIE 360 >gi|148379169|ref|YP_001253710.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A str. ATCC 3502] gi|153931319|ref|YP_001383546.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum A str. ATCC 19397] gi|153936775|ref|YP_001387095.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum A str. Hall] gi|205810260|sp|A7FT69|MNMA1_CLOB1 RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 gi|205810283|sp|A5I123|MNMA1_CLOBH RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 gi|148288653|emb|CAL82734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A str. ATCC 3502] gi|152927363|gb|ABS32863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A str. ATCC 19397] gi|152932689|gb|ABS38188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A str. Hall] Length = 356 Score = 249 bits (636), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 140/366 (38%), Positives = 212/366 (57%), Gaps = 17/366 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LLK GY+VIGVT+Q++ + + +++G CC+ V DARRV Sbjct: 4 KVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARRVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + I + YV ++++ F+ VI F Y G TP PC+ CN+ +KFS L +G D Sbjct: 64 NKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAIGIDY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + + R I+ + D ++DQ+Y L+ TQ QL P G KK + Sbjct: 124 VATGHYA-----IIEKHNDRYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKSKI 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+E+GL + +K DS++ICF+ + +K EG+ V G ILG H GI+ Sbjct: 179 REIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNILGTHKGIV 238 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDA 319 YTIGQR+GLG+A G+P++VV ++ + V++G E L ++ ++ N++ D L E Sbjct: 239 YYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTKLIAKDTNYIPFDTLKEPM 298 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 V+ KIR SQ P + +DG V V+F + + + GQ+ VFY D ++ Sbjct: 299 EVEA-----KIRYSQTPSKAIITPIEDGRVRVNFHEKQRAITKGQSVVFYKDD----LLI 349 Query: 379 GGGIIS 384 GGGII Sbjct: 350 GGGIIE 355 >gi|75910268|ref|YP_324564.1| tRNA-specific 2-thiouridylase MnmA [Anabaena variabilis ATCC 29413] gi|123608374|sp|Q3M5R7|MNMA_ANAVT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|75703993|gb|ABA23669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anabaena variabilis ATCC 29413] Length = 352 Score = 249 bits (636), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 146/364 (40%), Positives = 210/364 (57%), Gaps = 21/364 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSS AA+L GY+VIG+TL L K KG CC+ + + DA +C+ Sbjct: 3 KVVVGLSGGVDSSTAAAILHNQGYEVIGLTLWLM------KGKGQCCS-EGMIDAAYICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140 + + H V D + F+ ++ + Y AG TPLPC CN+TVKF ++ R QLG D Sbjct: 56 QLGIPHEVVDMRDVFQTHIVDYLVTGYGAGITPLPCSQCNKTVKFGPMVQYAREQLGCDR 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R D+ R + R +D +DQSYFL+ +Q L FPLG+M+K Sbjct: 116 IATGHYARISY---DEASGRYQLLRAVDRNKDQSYFLYDLSQDLLAASLFPLGEMEKADT 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGI 259 R +A E GL ADK +SQD+C V+ ++ IA + GDIV G+ILG+H+G+ Sbjct: 173 RRIATEHGLKTADKPESQDLCLVESNGSMRAF--LDKYIAPKKGDIVDTAGKILGQHDGV 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQR+GLG+A EPL+VV LD +++V+VG R + +NW+ + E + Sbjct: 231 HHYTIGQRKGLGIAAPEPLYVVELDAVNNKVVVGDRTKATQEECTVSRVNWV--SIPEPS 288 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 ++ RS+ +PV V N V + F++ + + GQA V+Y D +VLG Sbjct: 289 TPIRAAVQIRYRSAPEPVTVIPLENSR-VRLVFDEPQFSITPGQAAVWYDGD----KVLG 343 Query: 380 GGII 383 GGII Sbjct: 344 GGII 347 >gi|315652097|ref|ZP_07905095.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium saburreum DSM 3986] gi|315485589|gb|EFU75973.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium saburreum DSM 3986] Length = 363 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 143/366 (39%), Positives = 205/366 (56%), Gaps = 16/366 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDV GVT+Q++ S GS CC V DARRV Sbjct: 5 KVVVGMSGGVDSSVAAYLLKEAGYDVTGVTMQIWQSEDEEDMSGSGGCCGLSAVDDARRV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 I + +YV ++ + F++ VI F + Y TP PC+ CNR VK+ LL + LGAD Sbjct: 65 ARDIGIPYYVMNFRDEFKDKVIDYFVNEYVQARTPNPCIACNRYVKWESLLERSMMLGAD 124 Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R +L G R + +DQ+Y L+ TQ QL P+GD +K+ Sbjct: 125 YIATGHYARIEKLENG-----RYALRTSKTSAKDQTYALYNLTQDQLSRTLMPVGDYEKD 179 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A++ L +A+K DSQ+ICFV Y V+ EG+ V +G+ILG+H G Sbjct: 180 EIREIAKKFNLRVANKPDSQEICFVSDNDYASFVESEIGKKMPEGNFVTADGEILGKHKG 239 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I++YTIGQR+GLG+A+G P+FV + +++ V++G E + + + +N + F Sbjct: 240 ILHYTIGQRKGLGIALGHPIFVTEIRPDTNEVVIGENEDVFGYSLEANNLNAMAVEKF-- 297 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 DG + KIR S ++ +D + +DF+K + GQA V Y V Sbjct: 298 --FDGMRAVGKIRYSHKGEHCSIKVIGEDRIRIDFDKKVRAITPGQAVVLY---DESGLV 352 Query: 378 LGGGII 383 LGGG I Sbjct: 353 LGGGTI 358 >gi|291547860|emb|CBL20968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ruminococcus sp. SR1/5] Length = 362 Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 135/365 (36%), Positives = 205/365 (56%), Gaps = 13/365 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRVC 80 +V++AMSGGVDSSV A L K G + IG T++LYN+ R+ +CC+ DV DAR V Sbjct: 3 KVIIAMSGGVDSSVAALLTKESGDECIGATMKLYNNEDIGVHREKTCCSLDDVEDARSVA 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +++ +YVF++ F V+ F +Y G TP PC+DCNR +KF + +++G D Sbjct: 63 YQMDMPYYVFNFTADFHTEVMDRFVDAYENGCTPNPCIDCNRYLKFDKMFHRMQEIGYDY 122 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 + TGHY R D+ + R ++ + +D +DQSY L+ TQ+QL ++ PLG ++K+ V Sbjct: 123 IVTGHYARVEY---DEKRDRYLLKKAVDDTKDQSYVLYMLTQEQLAHVKLPLGGLRKDQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + G A K DSQDICFV G Y +++ EGD V G +GRH GII Sbjct: 180 RVIAEKHGFINARKHDSQDICFVPDGDYAKFIEKYTGKKTPEGDFVDKEGNYIGRHKGII 239 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +YTIGQRRGLG+ L+V + ++ V++G E L + +N + D++ Sbjct: 240 HYTIGQRRGLGIPAASRLYVCEISPKTNTVVLGDNEDLFSSELEADNVNLIS----VDSL 295 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + + KIR P + DG+ +V F++ + + GQA V Y D V+G Sbjct: 296 TEPKRVTAKIRYRHKEQPATAWQTPDGILHVKFDEPQRAITKGQAVVMYDGDE----VVG 351 Query: 380 GGIIS 384 GG+I+ Sbjct: 352 GGVIN 356 >gi|260588149|ref|ZP_05854062.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Blautia hansenii DSM 20583] gi|260541676|gb|EEX22245.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Blautia hansenii DSM 20583] Length = 361 Score = 249 bits (635), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 143/369 (38%), Positives = 210/369 (56%), Gaps = 17/369 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRV 79 +VVV +SGGVDSSV A LLK+ GYDVIGVT+Q++ + + G CC V DARRV Sbjct: 5 KVVVGLSGGVDSSVAAYLLKKQGYDVIGVTMQIWQEEDNEFQEENGGCCGLSAVDDARRV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +++ +YV ++ + F+ VI F Y G TP PC+ CNR VK+ LL + +GAD Sbjct: 65 AQILDIPYYVMNFRKEFKEKVIDYFNQEYLEGRTPNPCIACNRYVKWESLLKRSLDIGAD 124 Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R +L G R + + +DQ+Y L+ TQ+QL P+G+ KE Sbjct: 125 YIATGHYARVEQLPNGRYAIRNSVTAK-----KDQTYALYNLTQEQLSRTLMPVGEYTKE 179 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R +A+E GL +A K DSQ+ICFV Y ++ EG+ V +G ++G+H G Sbjct: 180 EIRRIAQEAGLPVAHKKDSQEICFVPDNDYAGFIEESTGKKLEEGNYVLEDGTVIGKHKG 239 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 II+YTIGQR+GL ++MG P+FV + +++ V++G E L V + +N++ D Sbjct: 240 IIHYTIGQRKGLNLSMGHPVFVTEIRPDTNEVVIGENEDLFVTDLICDRVNFMAI----D 295 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + +G + KIR + ++ +G V V F +S+ V GQA VFY + V Sbjct: 296 HLEEGKEFTAKIRYNHPGAVCTLEDLGEGKVKVLFRESQRAVTPGQAVVFYDGEY----V 351 Query: 378 LGGGIISGS 386 GGGII G Sbjct: 352 AGGGIILGK 360 >gi|262066104|ref|ZP_06025716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium periodonticum ATCC 33693] gi|291380199|gb|EFE87717.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium periodonticum ATCC 33693] Length = 362 Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 145/387 (37%), Positives = 212/387 (54%), Gaps = 38/387 (9%) Query: 2 VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61 V SE ++ ++ D N K ++V VAMSGGVDSS VA LLK+ GYD+ GVT++ + + Sbjct: 7 VASEFSKY--IEFDSNKKGIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS- 63 Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 DA++VCD + + HYV D + F+ V+ F + Y G TP PC+ CN Sbjct: 64 -------------DAKKVCDDLGIEHYVLDVRDEFKEKVMDYFVNEYMNGRTPNPCMVCN 110 Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLF 178 R +KF +L GA +ATGHY + + L VGDD +DQ YFL Sbjct: 111 RHIKFGKMLDFILSKGASFMATGHYTKLKNGLLSVGDDS------------NKDQVYFLS 158 Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG 238 + +L + FP+GD++K +R+LA+++G+ + K DSQ+ICFV GK + + G Sbjct: 159 QIQKDRLSKIIFPVGDLEKPKLRELAKQIGVRVYSKKDSQEICFVDDGKLKEFLIENTKG 218 Query: 239 IALE-GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES 297 A + G+IV NG ILG+H G YTIGQR+GLG++ EPL+V+ DK+++ +IVG E Sbjct: 219 KAQKPGNIVDKNGNILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDKDNNNIIVGENED 278 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV 357 L + +N E +D +CF K RS +++N D V F ++V Sbjct: 279 LFKDELTATRLNLFSVPSLES--LDNLECFAKTRSRDILHKCVLKKNGDNFQVKFIDNKV 336 Query: 358 -GVASGQACVFYTSDSNEARVLGGGII 383 + GQ VFY +D N V+ GG I Sbjct: 337 RAITPGQGIVFYNNDGN---VIAGGFI 360 >gi|322805504|emb|CBZ03068.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum H04402 065] Length = 356 Score = 248 bits (634), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 140/366 (38%), Positives = 211/366 (57%), Gaps = 17/366 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LLK GY+VIGVT+Q++ + + +++G CC+ V DARRV Sbjct: 4 KVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARRVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + I + YV ++++ F+ VI F Y G TP PC+ CN+ +KFS L +G D Sbjct: 64 NKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAMGIDY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + + R I+ + D ++DQ+Y L+ TQ QL P G KK + Sbjct: 124 VATGHYA-----IIEKHNDRYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKSKI 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+E+GL + +K DS++ICF+ + +K EG+ V G ILG H GI+ Sbjct: 179 REIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNILGTHKGIV 238 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDA 319 YTIGQR+GLG+A G+P++VV ++ + V++G E L + ++ N++ D L E Sbjct: 239 YYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDTNYIPFDTLKEPM 298 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 V+ KIR SQ P + +DG V V+F + + + GQ+ VFY D ++ Sbjct: 299 EVEA-----KIRYSQTPSKAIITPIEDGRVRVNFHEKQRAITKGQSVVFYKDD----LLI 349 Query: 379 GGGIIS 384 GGGII Sbjct: 350 GGGIIE 355 >gi|153938615|ref|YP_001390533.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum F str. Langeland] gi|205810312|sp|A7GCM3|MNMA1_CLOBL RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 gi|152934511|gb|ABS40009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum F str. Langeland] gi|295318614|gb|ADF98991.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum F str. 230613] Length = 356 Score = 248 bits (634), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 140/366 (38%), Positives = 211/366 (57%), Gaps = 17/366 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LLK GY+VIGVT+Q++ + + +++G CC+ V DARRV Sbjct: 4 KVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARRVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + I + YV ++++ F+ VI F Y G TP PC+ CN+ +KFS L +G D Sbjct: 64 NKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAMGIDY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + + R I+ + D ++DQ+Y L+ TQ QL P G KK + Sbjct: 124 VATGHYA-----IIEKHNDRYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKSKI 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+E+GL + +K DS++ICF+ + +K EG+ V G ILG H GI+ Sbjct: 179 REIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGSILGTHKGIV 238 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDA 319 YTIGQR+GLG+A G+P++VV ++ + V++G E L + ++ N++ D L E Sbjct: 239 YYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDTNYIPFDTLKEPM 298 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 V+ KIR SQ P + +DG V V+F + + + GQ+ VFY D ++ Sbjct: 299 EVEA-----KIRYSQTPSKAIITPIEDGRVRVNFHEKQRAITKGQSVVFYKDD----LLI 349 Query: 379 GGGIIS 384 GGGII Sbjct: 350 GGGIIE 355 >gi|237794471|ref|YP_002862023.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum Ba4 str. 657] gi|229260617|gb|ACQ51650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum Ba4 str. 657] Length = 356 Score = 248 bits (634), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 141/366 (38%), Positives = 211/366 (57%), Gaps = 17/366 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LLK GY+VIGVT+Q++ + + +++G CC+ V DARRV Sbjct: 4 KVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARRVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + I + YV ++++ F+ VI F Y G TP PC+ CN+ +KFS L +G D Sbjct: 64 NKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAMGIDY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + + R I+ + D ++DQ+Y L+ TQ QL P G KK + Sbjct: 124 VATGHYAIIKKH-----NDRYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKSKI 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+E+GL + +K DS++ICF+ + +K EG+ V G ILG H GI+ Sbjct: 179 REIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNILGTHKGIV 238 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDA 319 YTIGQR+GLG+A G+P++VV ++ + V++G E L + ++ N++ D L E Sbjct: 239 YYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDTNYIPFDTLKEPM 298 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 V+ KIR SQ P + DDG V V+F + + + GQ+ VFY D ++ Sbjct: 299 EVEA-----KIRYSQIPSKAIITPIDDGRVRVNFHEKQRAITKGQSVVFYKDD----LLI 349 Query: 379 GGGIIS 384 GGGII Sbjct: 350 GGGIIE 355 >gi|238922734|ref|YP_002936247.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium rectale ATCC 33656] gi|238874406|gb|ACR74113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium rectale ATCC 33656] Length = 362 Score = 248 bits (634), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 140/365 (38%), Positives = 203/365 (55%), Gaps = 15/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ K+ +G CC V DARRV Sbjct: 4 KVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDVFKQSQEGGCCGLSAVEDARRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +++ +YV +++ F+ VI F S Y TP PC+ CNR VK+ LL + ++GAD Sbjct: 64 AAVLDIPYYVMNFKADFKKYVIDYFVSEYERAYTPNPCIACNRYVKWESLLHRSLEIGAD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + R + + E+DQ+Y L+ TQ+QL P+G+ +K Sbjct: 124 YIATGHYAR----IAQLPNGRYTIANSVTAEKDQTYALYNLTQEQLRRTLMPVGEYEKPQ 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R +A E GL +A KSDSQDICFV Y ++ G+ V +G ILGRH G+ Sbjct: 180 IRRIAEEAGLPVAHKSDSQDICFVPDHDYASFIENETGKTYEPGNFVDESGNILGRHKGL 239 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 I+YTIGQR+GLG+ PLFV L ++ V++ ESL Y+ +IN++ ++ Sbjct: 240 IHYTIGQRKGLGITAATPLFVKELRPATNEVVISTNESLFSDTCYISDINYMA----QEH 295 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + K+R S + ++G + F++ + + GQA VFY + VL Sbjct: 296 ITPDTRSIGKVRYSHRGADCTLTPMENGMIKCVFDEPQRAMTPGQAAVFY----QDGHVL 351 Query: 379 GGGII 383 GG I Sbjct: 352 CGGTI 356 >gi|218133009|ref|ZP_03461813.1| hypothetical protein BACPEC_00870 [Bacteroides pectinophilus ATCC 43243] gi|217991882|gb|EEC57886.1| hypothetical protein BACPEC_00870 [Bacteroides pectinophilus ATCC 43243] Length = 375 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 141/372 (37%), Positives = 208/372 (55%), Gaps = 20/372 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRV 79 RVVV MSGGVDSSV A LLK GYDVIGVT+Q++ + + G CC V DARRV Sbjct: 16 RVVVGMSGGVDSSVAACLLKEQGYDVIGVTMQIWQDEDSCSMEENGGCCGWSAVEDARRV 75 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +++ +YV +++ FR VI F + Y G TP PC+ CNR VK+ LL + ++GAD Sbjct: 76 AQQLDIPYYVMNFKNEFRENVIEYFVNEYKNGRTPNPCIACNRYVKWESLLKRSMEIGAD 135 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + R ++ + +DQ+Y L+ TQ+QL P+G+ KE Sbjct: 136 YIATGHYAR----IEQLSNGRYVVRNSVTAAKDQTYALYNLTQEQLRHTLMPIGEYDKEH 191 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN-----AGIALEGDIVHLNGQILG 254 +R +A + GL +A+K DSQDICFV G Y + + + + G+ V+L G+++G Sbjct: 192 IRQIAAQRGLMVANKPDSQDICFVPDGDYAGFIMNSDYAQSCSKACVPGNFVNLAGEVIG 251 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 RH G ++YTIGQR+GLG+AMG P+FVV + ++ V++G R+ +N++ Sbjct: 252 RHKGYLHYTIGQRKGLGLAMGHPVFVVDIRPETNEVVIGDNSDCFSDRLVADRLNFMA-- 309 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 D + + +IR S V+ +DD + F++ + V GQA V Y Sbjct: 310 --VDRLTEPKHLMARIRYSHKGGECTVRMIDDDRIECVFDEPQRAVTKGQAVVLY----E 363 Query: 374 EARVLGGGIISG 385 + V GGG I G Sbjct: 364 DGHVFGGGTIIG 375 >gi|168178604|ref|ZP_02613268.1| tRNA -methyltransferase [Clostridium botulinum NCTC 2916] gi|226948452|ref|YP_002803543.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum A2 str. Kyoto] gi|182670342|gb|EDT82316.1| tRNA -methyltransferase [Clostridium botulinum NCTC 2916] gi|226842334|gb|ACO85000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A2 str. Kyoto] Length = 356 Score = 248 bits (634), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 140/366 (38%), Positives = 210/366 (57%), Gaps = 17/366 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LLK GY+VIGVT+Q++ + + +++G CC+ V DARRV Sbjct: 4 KVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARRVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + I + YV ++++ F+ VI F Y G TP PC+ CN+ +KFS L +G D Sbjct: 64 NKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAMGIDY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + + R I+ + D ++DQ+Y L+ TQ QL P G KK + Sbjct: 124 VATGHYA-----IIEKHNDRYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKSKI 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+E+GL + +K DS++ICF+ + +K EG+ V G ILG H GI+ Sbjct: 179 REIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNILGTHKGIV 238 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDA 319 YTIGQR+GLG+A G+P++VV ++ + V++G E L + ++ N++ D L E Sbjct: 239 YYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDTNYIPFDTLKEPM 298 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 V+ KIR SQ P + DD V V+F + + + GQ+ VFY D ++ Sbjct: 299 EVEA-----KIRYSQTPSKAIITPIEDDRVRVNFHEKQRAITKGQSVVFYKDD----LLI 349 Query: 379 GGGIIS 384 GGGII Sbjct: 350 GGGIIE 355 >gi|167036708|ref|YP_001664286.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115132|ref|YP_004185291.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855542|gb|ABY93950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928223|gb|ADV78908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 376 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 146/393 (37%), Positives = 217/393 (55%), Gaps = 43/393 (10%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKG 65 RL + + KN RVVV MSGGVDSSV A LLK G+DVIGVT+Q++ + +A + +G Sbjct: 7 RLENFFMKKNN---RVVVGMSGGVDSSVSAYLLKEQGFDVIGVTMQIWQDKDEEAVRVEG 63 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 CC+ V DARRV + I + +YV ++++ F+ VI F Y G TP PC+ CN+ +K Sbjct: 64 GCCSLSAVNDARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLKGRTPNPCIACNKYIK 123 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F +LL + A +ATGHY D+ + R ++ + +D +DQ+Y L+ TQ QL Sbjct: 124 FEELLKRAWMIDAYYVATGHYAIKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQL 180 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 + FPLG KK+ VR+LA+ +GL +A K DSQ+ICFV Y ++ G+ Sbjct: 181 EHILFPLGKYKKDEVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEF 240 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 G+ LG H GII+YTIGQR+GLG+++G+PL+VV +D ++ V++G Sbjct: 241 RDTRGRFLGYHKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLG------------ 288 Query: 306 REINWLGDGLFEDAVVDGFKCFV-------------KIRSSQDPVPVFVQRNDDG-VYVD 351 GD +F D ++ F+ KIR + ++ +DG V+V Sbjct: 289 -----YGDEVFGDELISYNNNFISIDKLEREMRVKAKIRYNAKEQDAVIRPLEDGKVFVK 343 Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F+ + + GQ+ VFY D V+GGG I Sbjct: 344 FDNPQRAITPGQSVVFYEGDI----VVGGGTIE 372 >gi|167745698|ref|ZP_02417825.1| hypothetical protein ANACAC_00390 [Anaerostipes caccae DSM 14662] gi|167655010|gb|EDR99139.1| hypothetical protein ANACAC_00390 [Anaerostipes caccae DSM 14662] Length = 356 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 144/366 (39%), Positives = 205/366 (56%), Gaps = 18/366 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GY+VIGVT+Q++ + G CC V DARRV Sbjct: 4 KVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDEEQELLEENGGCCGLSAVDDARRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +++ +YV ++++ F+ VI F Y G TP PC+ CNR VK+ LL + +GAD Sbjct: 64 AQALDIPYYVMNFKQDFKEHVIDYFIDEYLDGRTPNPCIACNRYVKWESLLKRSLDIGAD 123 Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R +L G R + R E+DQ+Y L+ TQ QL P+G+ K+ Sbjct: 124 YIATGHYARIEKLSNG-----RYALKRSATPEKDQTYALYNLTQNQLSKTLMPVGEYTKD 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A ++ L +A K DSQDICFV G Y D ++ G+ V ++G ILG H G Sbjct: 179 EIREIAEKIHLPVAHKPDSQDICFV-DGSYGDFIEETTGQKIRPGNFVDMDGNILGTHKG 237 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I+ YT+GQRRGLG+++ +P +VV +DK + V++G E L +Y +N + E Sbjct: 238 IVCYTVGQRRGLGLSLKQPGYVVRIDKERNEVVIGSNEDLMTDTLYGDHVNLMSVSSIE- 296 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 DG + K+R + P V + D + V F++ + V GQA VFY D V Sbjct: 297 ---DGMRFQAKVRYNHRGAPCTVSMDGKDRIKVLFDEPQRAVTPGQAVVFYDGDY----V 349 Query: 378 LGGGII 383 GG I Sbjct: 350 AGGATI 355 >gi|225376291|ref|ZP_03753512.1| hypothetical protein ROSEINA2194_01929 [Roseburia inulinivorans DSM 16841] gi|225211937|gb|EEG94291.1| hypothetical protein ROSEINA2194_01929 [Roseburia inulinivorans DSM 16841] Length = 358 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 142/367 (38%), Positives = 206/367 (56%), Gaps = 18/367 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK+ GYDVIGVT+Q++ ++ G CC V DARRV Sbjct: 4 KVVVGMSGGVDSSVAAYLLKKQGYDVIGVTMQIWQDEDEFTQEKNGGCCGLSAVNDARRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + +YV ++++ F+ V+ F + Y G TP PC+ CNR VK+ LL + +GAD Sbjct: 64 ADRLEIPYYVMNFKQEFKKNVMDYFTAEYLKGRTPNPCIACNRYVKWEALLDRSLAIGAD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R V R + + E+DQ+Y L+ TQ QL P+GD K+ Sbjct: 124 YIATGHYAR----VEQLPNGRYAIKNSVTAEKDQTYALYNLTQTQLSRTLMPVGDYHKDE 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHNG 258 +R +A E+GL +A K DS +ICF+ Y + K + G+ V +G+ILGRH G Sbjct: 180 IRQIAEEIGLMVAHKKDSMEICFIPDDDYAGFIDKECGKLVPPPGNFVSTDGKILGRHKG 239 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I +YT+GQR+GLG+A+G P+FV + ++ V++G E + +Y +N++ D Sbjct: 240 ITHYTVGQRKGLGIALGYPVFVTEIRPETNEVVLGSNEDVFTTELYADHVNFMS---LPD 296 Query: 319 AVVDG-FKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 +DG + KIR S V R +D ++ FE+ V GQA V Y D Sbjct: 297 --IDGEMELKAKIRYSHSGSMCKVTRTGEDQIHCVFEEPVRAVTPGQAVVLYDGD----Y 350 Query: 377 VLGGGII 383 + GGG+I Sbjct: 351 IAGGGVI 357 >gi|160940314|ref|ZP_02087659.1| hypothetical protein CLOBOL_05203 [Clostridium bolteae ATCC BAA-613] gi|158436894|gb|EDP14661.1| hypothetical protein CLOBOL_05203 [Clostridium bolteae ATCC BAA-613] Length = 351 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 142/362 (39%), Positives = 202/362 (55%), Gaps = 18/362 (4%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRVCDTIN 84 MSGGVDSSV A LLK GYDVIGVT+Q++ + + +G CC V DARRV + Sbjct: 1 MSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEDTEVQEAEGGCCGLSAVDDARRVAMDLG 60 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + +YV +++E FR V+ F Y G TP PC+ CNR VK+ LL + +GAD +ATG Sbjct: 61 IPYYVMNFKEEFRKNVMDYFVGEYVEGRTPNPCIACNRHVKWESLLRRSMAIGADYIATG 120 Query: 145 HYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 HY + RL G R + + +DQ+Y L+ TQ+QL P+G KE +RD+ Sbjct: 121 HYAQIDRLPGG-----RYSLKTSVTAAKDQTYALYNLTQEQLSHTLMPVGSYHKEEIRDM 175 Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263 A+ +GL +A K DSQ+ICF+ Y ++ G+ V L+G++LGRH GI +YT Sbjct: 176 AKRLGLPVAHKPDSQEICFIPDHDYASFIEEYTGRELPPGNFVDLDGRVLGRHRGITHYT 235 Query: 264 IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDAVVD 322 +GQR+GL ++MG P+FVV + ++ V++G E + + + ++NW+ DGL + Sbjct: 236 VGQRKGLNLSMGRPVFVVEIRPETNEVVIGNNEDVFTNVLRCDKLNWMAVDGLHGKPM-- 293 Query: 323 GFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 KIR S P ++ DD V F + V GQA VFY D V GGG Sbjct: 294 --DVMAKIRYSHRGSPCTIREIGDDMVECCFHEPVRAVTPGQAVVFYDGDY----VAGGG 347 Query: 382 II 383 I Sbjct: 348 TI 349 >gi|186685498|ref|YP_001868694.1| tRNA-specific 2-thiouridylase MnmA [Nostoc punctiforme PCC 73102] gi|205816898|sp|B2J5L9|MNMA_NOSP7 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|186467950|gb|ACC83751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nostoc punctiforme PCC 73102] Length = 351 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 142/364 (39%), Positives = 211/364 (57%), Gaps = 21/364 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSS AA+L GY+VIG+TL L K KG CC+ + + DA +C+ Sbjct: 3 KVVVGLSGGVDSSTAAAILHHQGYEVIGLTLWLM------KGKGQCCS-EGMIDAADLCE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + V H + D + F+ ++ + Y+AG TPLPC CN+TVKF ++ R+ LG D Sbjct: 56 QLGVPHQIVDIRDLFQTHIVDYLVTGYSAGITPLPCSQCNKTVKFGPMVQYAREELGCDR 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R D+ R + R +D +DQSYFL+ +Q L FPLG+++K Sbjct: 116 IATGHYARISY---DEATGRYQLLRAIDRNKDQSYFLYDLSQDLLAATIFPLGELEKTDT 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R +A E GL ADK +SQD+C V+ G + + A GDIV G+ILG+H+G+ Sbjct: 173 RRIATEYGLKTADKPESQDLCLVESNGSMRAFLDKYLA--PKSGDIVDTTGKILGQHDGV 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQR+GLG+A EPL+V+ LD +++V+VG R + + +NW+ + E + Sbjct: 231 HHYTIGQRKGLGIAAAEPLYVIELDAENNKVVVGDRTKVTQPECTVNRVNWV--SIAEPS 288 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + ++ RS+ PV V N V + F++ + + GQA V+Y + +VLG Sbjct: 289 TPIHAEVQIRYRSTPTPVTVIPLENSR-VRLVFDEPQFSITPGQAAVWYDGE----KVLG 343 Query: 380 GGII 383 GGII Sbjct: 344 GGII 347 >gi|325290391|ref|YP_004266572.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Syntrophobotulus glycolicus DSM 8271] gi|324965792|gb|ADY56571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Syntrophobotulus glycolicus DSM 8271] Length = 352 Score = 248 bits (632), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 147/364 (40%), Positives = 205/364 (56%), Gaps = 17/364 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V VAMSGGVDSSV A LLKR+GYDV+GVT+Q++ + ++ +CC+ V DARRV Sbjct: 3 KVFVAMSGGVDSSVAALLLKREGYDVVGVTMQIWP--QPEDKEKACCSLDAVNDARRVAW 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + HYV ++ + F VI F Y AG TP PC+ CNR +KF L +GAD + Sbjct: 61 KLGIPHYVLNFRDDFEEKVIRYFCREYLAGRTPNPCIACNRYLKFDLFLQKALAMGADYI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 +TGHY R R ++ R + + +D +DQSY L+ Q QL FPLG KKE R Sbjct: 121 STGHYARIRR---NEQTERYELRKGLDQTKDQSYALYNLQQDQLQHTLFPLGTYKKEETR 177 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA+E GL +A K DSQ+ICFV + + + + + G V +G ++G H GI Sbjct: 178 KLAQEGGLPVAFKKDSQEICFVDHSHAQFIEEYLQSPLT-PGKFVDADGSVVGIHQGIYR 236 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL-GDGLFEDAV 320 YTIGQ +GLG+AMG P++V ++ S+ V VG E L + ++N++ G+G Sbjct: 237 YTIGQHKGLGLAMGYPVYVTKIEPESNTVRVGKMEELFQDALLAEDLNFVSGEG-----P 291 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 K VKIR + VP + +G + V FE + + GQA VFY D VLG Sbjct: 292 TGPMKVQVKIRYNAQAVPAVIHPRAEGKMKVVFEIPQKSITPGQAVVFYDHDI----VLG 347 Query: 380 GGII 383 GG I Sbjct: 348 GGTI 351 >gi|205815324|sp|B0KC14|MNMA1_THEP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 Length = 364 Score = 248 bits (632), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 213/382 (55%), Gaps = 40/382 (10%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDA 76 K+ RVVV MSGGVDSSV A LLK G+DVIGVT+Q++ + +A + +G CC+ V DA Sbjct: 3 KNNRVVVGMSGGVDSSVSAYLLKEQGFDVIGVTMQIWQDKDEEAVRVEGGCCSLSAVNDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV + I + +YV ++++ F+ VI F Y G TP PC+ CN+ +KF +LL + Sbjct: 63 RRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLKGRTPNPCIACNKYIKFEELLKRAWMI 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 A +ATGHY D+ + R ++ + +D +DQ+Y L+ TQ QL + FPLG K Sbjct: 123 DAYYVATGHYAIKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKYK 179 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ VR+LA+ +GL +A K DSQ+ICFV Y ++ G+ G+ LG H Sbjct: 180 KDEVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGYH 239 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GII+YTIGQR+GLG+++G+PL+VV +D ++ V++G GD +F Sbjct: 240 KGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLG-----------------YGDEVF 282 Query: 317 EDAVVDGFKCFV-------------KIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASG 362 D ++ F+ KIR + ++ +DG V+V F+ + + G Sbjct: 283 GDELISYNNNFISIDKLEREMRVKAKIRYNAKEQDAVIRPLEDGKVFVKFDNPQRAITPG 342 Query: 363 QACVFYTSDSNEARVLGGGIIS 384 Q+ VFY D V+GGG I Sbjct: 343 QSVVFYEGDI----VVGGGTIE 360 >gi|320160878|ref|YP_004174102.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaerolinea thermophila UNI-1] gi|319994731|dbj|BAJ63502.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaerolinea thermophila UNI-1] Length = 361 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 143/367 (38%), Positives = 203/367 (55%), Gaps = 14/367 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 +D VVVAMSGGVDSSV AALL GY VIG+ L+L+ S + + + CC + ARR Sbjct: 4 RDETVVVAMSGGVDSSVAAALLVEQGYRVIGMMLRLW-SEEGKEDQNRCCTPDAMALARR 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + Y D E+F+ V+ F YA+G TP PC+ CNR +++ L + LGA Sbjct: 63 VAAKLGIPFYAVDVREKFKEVVVSHFLEGYASGITPNPCLKCNRYIRWGVLHEYAQSLGA 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 ATGHY R R + + + R +D+E+DQSY L Q+QL FP+G+ K Sbjct: 123 TWFATGHYARLRRLESGEVQ----LLRGVDVEKDQSYVLSVLPQEQLRHTFFPVGEYHKP 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR+LAR GL +A+++DSQD+CF+ G Y D + R ++ G IV+ G+ILG H G Sbjct: 179 EVRELARRFGLPVANRADSQDLCFLAGGDYRDFLSRHAPEVSRPGVIVNRQGEILGEHQG 238 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 + YTIGQR+GLG+A PL+V+ D +R++VG L + +NW+ Sbjct: 239 LAFYTIGQRKGLGIAFPRPLYVLEKDVVRNRLVVGEEHELGRSTLIAERVNWISG----Q 294 Query: 319 AVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 V + VKIR +++ V + D V V+F+ + GQ CVFY + Sbjct: 295 PPVSSIQVEVKIRYKAREAHGVVIPLTPDRVKVEFDHPLRDITPGQQCVFYQGEI----C 350 Query: 378 LGGGIIS 384 LGGG IS Sbjct: 351 LGGGTIS 357 >gi|15895501|ref|NP_348850.1| tRNA-specific 2-thiouridylase MnmA [Clostridium acetobutylicum ATCC 824] gi|24638326|sp|Q97GY2|MNMA_CLOAB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|15025232|gb|AAK80190.1|AE007723_8 TRNA 5-methylaminomethyl-2-thiouridylate)-methyltransferase, PP-loop ATPase [Clostridium acetobutylicum ATCC 824] gi|325509648|gb|ADZ21284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium acetobutylicum EA 2018] Length = 355 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 145/367 (39%), Positives = 215/367 (58%), Gaps = 15/367 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78 + +VV+ MSGGVDSSV A LLK GYDVIGVT++L + ++++G CC+ V DARR Sbjct: 2 NKKVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMKLTPDDAFYTEQEGGCCSLSAVEDARR 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V I + YV ++ + F+ VI F Y G+TP PC+ CN+ +KF LL LGA Sbjct: 62 VAYRIGIPFYVVNFTDIFKEKVIDYFTEEYLNGKTPNPCIACNKYIKFDALLKKAESLGA 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R V ++G R ++ + D ++DQ+Y ++ TQ QL P GD KK+ Sbjct: 122 DYIATGHYCR---IVEENG--RYVIRKSEDEKKDQTYVMYNMTQDQLKHTLMPCGDYKKD 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++ARE+GL++ DK DS++ICF+ + +KR G+ V G++LG+H G Sbjct: 177 RIREIAREIGLNVFDKKDSEEICFIPDNDHGGFIKRECPKAVKTGNFVDKEGKVLGKHKG 236 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFE 317 II YTIGQR+GLG+A G+ +FV +D ++V++G E + + + + N++ D L E Sbjct: 237 IIYYTIGQRKGLGIATGKRVFVTNIDAMKNQVVIGEEEEIFENELISFKNNFIPFDKLTE 296 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 VD + S PV +D+ V V FEK + + GQ+ VFY D + Sbjct: 297 PMEVDAKIRYNAKASKATIYPV----DDENVKVKFEKPQRAITKGQSVVFYDGD----LL 348 Query: 378 LGGGIIS 384 +GGGII Sbjct: 349 VGGGIIK 355 >gi|187780204|ref|ZP_02996677.1| hypothetical protein CLOSPO_03800 [Clostridium sporogenes ATCC 15579] gi|187773829|gb|EDU37631.1| hypothetical protein CLOSPO_03800 [Clostridium sporogenes ATCC 15579] Length = 359 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 140/366 (38%), Positives = 211/366 (57%), Gaps = 17/366 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LLK GY+VIGVT+Q++ + + +++G CC+ V DARRV Sbjct: 7 KVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARRVA 66 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + I + YV ++++ F+ VI F Y G TP PC+ CN+ +KFS L +G D Sbjct: 67 NKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAMGIDY 126 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + + R I+ + D ++DQ+Y L+ TQ QL P G KK + Sbjct: 127 VATGHYA-----IIEKHNDRYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKSKI 181 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+E+GL + +K DS++ICF+ + +K EG+ V G ILG H GI+ Sbjct: 182 REIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNILGTHKGIV 241 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDA 319 YTIGQR+GLG+A G+P++VV ++ + V++G E L + ++ N++ D L E Sbjct: 242 YYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDTNYIPFDTLKEPM 301 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 V+ KIR SQ P + +DG V V+F + + + GQ+ VFY D ++ Sbjct: 302 EVEA-----KIRYSQIPSKAIITTVEDGRVRVNFHEKQRAITKGQSVVFYKDD----LLI 352 Query: 379 GGGIIS 384 GGGII Sbjct: 353 GGGIIE 358 >gi|256752949|ref|ZP_05493777.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter ethanolicus CCSD1] gi|256748170|gb|EEU61246.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter ethanolicus CCSD1] Length = 376 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 146/393 (37%), Positives = 217/393 (55%), Gaps = 43/393 (10%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKG 65 RL + + KN RVVV MSGGVDSSV A LLK G+DVIGVT+Q++ + +A + +G Sbjct: 7 RLENFFMKKNN---RVVVGMSGGVDSSVSAYLLKEQGFDVIGVTMQIWQDKDEEAVRVEG 63 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 CC+ V DARRV + I + +YV ++++ F+ VI F Y G TP PC+ CN+ +K Sbjct: 64 GCCSLSAVNDARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLKGRTPNPCIACNKYIK 123 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F +LL + A +ATGHY D+ + R ++ + +D +DQ+Y L+ TQ QL Sbjct: 124 FEELLKRAWMIDAYYVATGHYAVKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQL 180 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 + FPLG KK+ VR+LA+ +GL +A K DSQ+ICFV Y ++ G+ Sbjct: 181 EHILFPLGKYKKDEVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEF 240 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 G+ LG H GII+YTIGQR+GLG+++G+PL+VV +D ++ V++G Sbjct: 241 RDTRGRFLGYHKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLG------------ 288 Query: 306 REINWLGDGLFEDAVVDGFKCFV-------------KIRSSQDPVPVFVQRNDDG-VYVD 351 GD +F D ++ F+ KIR + ++ +DG V+V Sbjct: 289 -----YGDEVFGDELISYNNNFISIDKLEREMRVKAKIRYNAKEQDAVIRPLEDGRVFVK 343 Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F+ + + GQ+ VFY D V+GGG I Sbjct: 344 FDNPQRAITPGQSVVFYDGDI----VVGGGTIE 372 >gi|331002457|ref|ZP_08325975.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae oral taxon 107 str. F0167] gi|330410273|gb|EGG89707.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae oral taxon 107 str. F0167] Length = 363 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 140/365 (38%), Positives = 208/365 (56%), Gaps = 14/365 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDV GVT+Q++ S GS CC V DARRV Sbjct: 5 KVVVGMSGGVDSSVAAYLLKEAGYDVTGVTMQIWQSEDEEDMSGSGGCCGLSAVDDARRV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 I + +YV ++ + F++ VI F + Y TP PC+ CNR VK+ LL + LGAD Sbjct: 65 ARDIGIPYYVMNFRDEFKDKVIDYFVNEYVQARTPNPCIACNRYVKWESLLERSMMLGAD 124 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY +R+ ++G+ M + +DQ+Y L+ TQ QL P+GD +K+ Sbjct: 125 YIATGHY--ARIEKLENGRFALRMSKTS--AKDQTYALYNLTQDQLSKTLMPVGDYEKDE 180 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R++A++ L +A+K DSQ+ICFV Y V+ G+ V +G+ILG+H GI Sbjct: 181 IREIAKKFNLRVANKPDSQEICFVSDNDYASFVESEIGKKMPVGNFVTADGEILGKHKGI 240 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 ++YTIGQR+GLG+A+G P+FV + +++ V++G E + + + +N + ++ Sbjct: 241 LHYTIGQRKGLGIALGHPIFVTEIRPDTNEVVIGENEDVFGYSLEANNLN----AMAVES 296 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 DG + KIR S ++ +D + +DF+K + GQA V Y VL Sbjct: 297 FFDGMRAVGKIRYSHKGEHCTIKVLGEDRIRIDFDKKVRAITPGQAVVLY---DESGLVL 353 Query: 379 GGGII 383 GGG I Sbjct: 354 GGGTI 358 >gi|257063219|ref|YP_003142891.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Slackia heliotrinireducens DSM 20476] gi|256790872|gb|ACV21542.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Slackia heliotrinireducens DSM 20476] Length = 353 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 144/365 (39%), Positives = 204/365 (55%), Gaps = 19/365 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV A LL R GY+V+G T+ LY+ + D+ DAR V + Sbjct: 4 RVLVGMSGGVDSSVTAYLLLRQGYEVVGATMNLYDPGRLGVPDVRDGESNDLEDARSVAN 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + ++H+V D+ F N V+ PFA +YA G TP PC+ CNR +KF +L R+LG D + Sbjct: 64 RLGIAHHVLDFGCEFENNVVRPFAQAYADGLTPNPCIACNRHLKFGLMLKAARELGCDGI 123 Query: 142 ATGHYIR--SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ATGHY R RL DG R ++ + +D +DQ+Y L+ TQ QL PLG+ K+ Sbjct: 124 ATGHYARIAQRL----DG--RFVLMKGLDDAKDQAYVLYHMTQDQLAHTVLPLGEYTKQQ 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E G A K +SQDICFV G Y ++R + GD++ NG +LG+H G Sbjct: 178 VRAIAAEQGFANARKHESQDICFVPDGDYVGFLERYAGLVPEPGDVLDENGAVLGQHRGA 237 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 I YT+GQR+G+G+A + L+V D ++ + +GP ++L + NW+ L ++ Sbjct: 238 IRYTLGQRKGIGIASTQALYVTAKDMAANTITMGPADALLADGCTVGNWNWI---LPDEG 294 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 V VK Q P V +DG V DF++ A GQ+ V Y D+ VL Sbjct: 295 PV---HAMVKTHYRQKPHGAMVVPQEDGTVRFDFDEPSRLAAPGQSAVAYIGDT----VL 347 Query: 379 GGGII 383 GGGI+ Sbjct: 348 GGGIV 352 >gi|134298633|ref|YP_001112129.1| tRNA-specific 2-thiouridylase MnmA [Desulfotomaculum reducens MI-1] gi|172044262|sp|A4J2K1|MNMA_DESRM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|134051333|gb|ABO49304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfotomaculum reducens MI-1] Length = 367 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 142/366 (38%), Positives = 209/366 (57%), Gaps = 14/366 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDARRV 79 RV+VAMSGGVDSSV AALL++ GYD++GVT+Q+++ CC+ V DARRV Sbjct: 6 RVLVAMSGGVDSSVTAALLQQQGYDIVGVTMQIWDPEVTVVGDDYVGCCSLTAVDDARRV 65 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + + +YV ++ E F VI F Y G TP PC+ CNR +KF LL RQ+G D Sbjct: 66 ANVLGIPYYVLNFRELFTEKVIQYFVDEYFQGRTPNPCIACNRFIKFEALLQRARQMGFD 125 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY +RL ++ +R + + +D ++DQSY L+ TQ Q+ PL D K+ Sbjct: 126 YIATGHY--ARLGYSEEFQRYTVK-KALDDKKDQSYVLYGFTQDQIAHTLMPLADYTKDQ 182 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A+EMGL K +SQ+ICFV Y + + + G G L G +LG H GI Sbjct: 183 VRGIAKEMGLPTYSKPESQEICFVHDNNYRNFLDERSQGGIKPGPFKDLAGNVLGEHKGI 242 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YTIGQRRGLG+A GE +V+ +D +++ V VG E++ + E N++ LFE+ Sbjct: 243 PFYTIGQRRGLGLATGERTYVIDIDPDNNVVTVGSEEAIWGTELIASENNFI---LFEN- 298 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + ++R + P P ++ +G V V F+ + + GQA V+Y D ++ Sbjct: 299 LTGPQELEAQVRYNSKPSPAIIEPYGEGLVKVTFKYPQRAITPGQAVVYYQGDY----LV 354 Query: 379 GGGIIS 384 GGG I Sbjct: 355 GGGTIE 360 >gi|108804192|ref|YP_644129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rubrobacter xylanophilus DSM 9941] gi|123177389|sp|Q1AWB1|MNMA_RUBXD RecName: Full=Bifunctional protein nifU/mnmA; Includes: RecName: Full=NifU-like protein; Includes: RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|108765435|gb|ABG04317.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rubrobacter xylanophilus DSM 9941] Length = 488 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 146/362 (40%), Positives = 202/362 (55%), Gaps = 23/362 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VV AMSGGVDS+V A LLK GY+V+ VT +L++ S+ SCC+ V AR Sbjct: 146 VVAAMSGGVDSAVTALLLKERGYEVVAVTFRLHDGEPGSR---SCCSPDTVLFARETAHG 202 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + H+ + E F V+ F SYAAG TP PCV CN VKF + +LG +A Sbjct: 203 LGIPHFTLNLRELFDRRVMRDFVGSYAAGRTPNPCVACNAHVKFHAAAFLADRLGLRHVA 262 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R VG+ + RP D +DQ+Y L+ + L FPLGD +K VR Sbjct: 263 TGHYAR----VGEG----PCLERPEDGRKDQTYVLWPVPPRLLGRTIFPLGDYRKSEVRR 314 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A E GL +A +SQDICF+ G Y V+R + G+IV G++LGRH G++++ Sbjct: 315 IAEERGLAVARTPESQDICFIPDGDYRSFVRRRVR--SEPGEIVDRQGRVLGRHAGVVDF 372 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 T+GQRRGLG++ PL+V + S +V+VG R LEV R+ +R NW D Sbjct: 373 TVGQRRGLGISAPTPLYVTEVRPRSRQVVVGSRRELEVRRMLVRGANWFLD--------P 424 Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGI 382 V++R + +PVP ++ G V + GVA GQ+ VFYT D A+V+GGGI Sbjct: 425 REAALVQVRYNGEPVPCELEEGAGGWEVALLEPVFGVAPGQSAVFYTRDG--AKVVGGGI 482 Query: 383 IS 384 I+ Sbjct: 483 IA 484 >gi|226226536|ref|YP_002760642.1| tRNA-specific 2-thiouridylase MnmA [Gemmatimonas aurantiaca T-27] gi|226089727|dbj|BAH38172.1| tRNA-specific 2-thiouridylase MnmA [Gemmatimonas aurantiaca T-27] Length = 381 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 147/376 (39%), Positives = 205/376 (54%), Gaps = 19/376 (5%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 PK RV+VAMSGGVDSSV AA+L G DV+GVT++L+ A CC+ DAR Sbjct: 6 PKGARVLVAMSGGVDSSVAAAILMEHGCDVVGVTMKLHGD-GADVPDRPCCSLDATSDAR 64 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RVC+ + + HYV + + F + V+ F YA G TP+PCV CN KF DLL + Sbjct: 65 RVCEKLGIPHYVTNLVDHFSHDVLDDFVQEYARGRTPIPCVRCNTFTKFRDLLHKADAID 124 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A LATGHY R G + +M R +D +DQSYFL+ + L L P+G K Sbjct: 125 APWLATGHYARIGHRHG-----QAVMVRGLDTSKDQSYFLWGIDRPVLDRLVLPIGAQTK 179 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR---INAGIALEGDIVHLNGQILG 254 RD+AR GL A+K +SQDICFV G + V+ +A G + +G+I+G Sbjct: 180 AETRDIARRFGLRTAEKIESQDICFVPDGDHVRVIAEHLGADAPALQPGPLRLASGEIIG 239 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H G +TIGQR+GL EP+FVV + + V+VGPRE+L + RE+NWL Sbjct: 240 EHQGFARFTIGQRKGLPGGFAEPMFVVEIVPSERAVVVGPREALLGRGVEARELNWLA-- 297 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSN 373 +A G + V++R+ P P + R D G+ + +++ ++ GQ+ V + D Sbjct: 298 ---EAPPVGAQVQVQVRNRARPSPATIVRVDPQGIELALDEAVQAISPGQSLVVFDGDV- 353 Query: 374 EARVLGGGIISGSKRS 389 VLGGGII R+ Sbjct: 354 ---VLGGGIIERGMRA 366 >gi|255524816|ref|ZP_05391766.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium carboxidivorans P7] gi|296188647|ref|ZP_06857035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium carboxidivorans P7] gi|255511483|gb|EET87773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium carboxidivorans P7] gi|296046911|gb|EFG86357.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium carboxidivorans P7] Length = 358 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 138/366 (37%), Positives = 213/366 (58%), Gaps = 15/366 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARR 78 + +VV+ MSGGVDSSV A LLK+ GYDVIGVT+Q++ + + +G CC+ V DARR Sbjct: 2 NKKVVIGMSGGVDSSVAAYLLKQQGYDVIGVTMQVWQEDEEYEAVEGGCCSLSAVEDARR 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V +++ YV ++++ F+ VI F Y G TP PCV CN+ +KF LL +LGA Sbjct: 62 VAYKLDIPFYVMNFKDIFKKNVIDYFIDEYMQGRTPNPCVACNKFIKFDALLKKAMELGA 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY V + R I+ + D ++DQ+Y L+ TQ QL P G KKE Sbjct: 122 DYVATGHYA-----VVEKHDNRYILRKSEDDKKDQTYALYNLTQFQLEHTLMPCGVYKKE 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A+E+GL + +K DS++ICF+ + +K+ G+ V G +LGRH G Sbjct: 177 RIREIAKEIGLLVHNKKDSEEICFIPDNDHGGYIKKQVPSKVKPGNFVDKEGNVLGRHKG 236 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I+ YTIGQR+GLG+A G P++V ++ + V++G + + ++IN++ D Sbjct: 237 IVYYTIGQRKGLGIAFGVPMYVTDINPLRNEVVLGSENDIFKTELIAKDINFIP----FD 292 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 ++ + K+R S P ++ D+G V V+FE + + GQ+ VFY +D + Sbjct: 293 SLQGTMEIQAKVRYSAKPSRAWITALDNGRVKVEFENKQRAITKGQSVVFYNND----LL 348 Query: 378 LGGGII 383 LGGG+I Sbjct: 349 LGGGVI 354 >gi|87306814|ref|ZP_01088960.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Blastopirellula marina DSM 3645] gi|87290187|gb|EAQ82075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Blastopirellula marina DSM 3645] Length = 363 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 145/378 (38%), Positives = 205/378 (54%), Gaps = 35/378 (9%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGV-------------------TLQLYNSRKASKRKGSC 67 MSGGVDSSV A LL +G++VIGV L + N R K+ C Sbjct: 1 MSGGVDSSVAAHLLLEEGHEVIGVFMRHGEQSPVASCQIDGQSALPILNDRPDHKQ--GC 58 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 C+ D DARRV D + + Y + + F +I F Y AG TP PCV CN +KF Sbjct: 59 CSASDAADARRVADNLQIPFYALNLQREF-GQIIDYFVDEYVAGRTPNPCVMCNNWIKFG 117 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 L +GA+ +ATGHY R + D + R +D +DQ+Y LF ++ L Sbjct: 118 KLFDYADSVGAEYVATGHYAR---LITDQTDALPRLVRGVDSGKDQTYVLFGIGREYLRR 174 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 + P+G +K +R+LA ++G+ +ADK DSQ+ICFV GK+ + +K A + G+IV Sbjct: 175 MLLPVGQFEKSRIRELAGQIGMRVADKKDSQEICFVTSGKHDEFIKSRRADLQTAGEIVT 234 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 G+++G H+GI YTIGQR+GLGVA+GEP FVV +D +++V++G +E L + R+ Sbjct: 235 TAGEVVGTHDGIEKYTIGQRKGLGVALGEPRFVVRIDAETNQVVIGEKEELGRTELTARD 294 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 NWL D +C +IR + D P V+ DG + V F++ GVA GQA V Sbjct: 295 CNWL-----VDLPAGPLRCRAQIRYNSDDAPATVEHLPDGRIAVTFDEPRRGVAPGQAVV 349 Query: 367 FYTSDSNEARVLGGGIIS 384 Y D +VLGGG I Sbjct: 350 CYDGD----QVLGGGWIE 363 >gi|167039428|ref|YP_001662413.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter sp. X514] gi|300915481|ref|ZP_07132794.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter sp. X561] gi|307725247|ref|YP_003904998.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter sp. X513] gi|166853668|gb|ABY92077.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter sp. X514] gi|300888541|gb|EFK83690.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter sp. X561] gi|307582308|gb|ADN55707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter sp. X513] Length = 376 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 146/393 (37%), Positives = 217/393 (55%), Gaps = 43/393 (10%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKG 65 RL + + KN RVVV MSGGVDSSV A LLK G+DVIGVT+Q++ + +A + +G Sbjct: 7 RLENFFMKKNN---RVVVGMSGGVDSSVSAYLLKEQGFDVIGVTMQIWQDKDEEAVRVEG 63 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 CC+ V DARRV + I + +YV ++++ F+ VI F Y G TP PC+ CN+ +K Sbjct: 64 GCCSLSAVNDARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNKYIK 123 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F +LL + A +ATGHY D+ + R ++ + +D +DQ+Y L+ TQ QL Sbjct: 124 FEELLKRAWMIDAYYVATGHYAVKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQL 180 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 + FPLG KK+ VR+LA+ +GL +A K DSQ+ICFV Y ++ G+ Sbjct: 181 EHILFPLGKYKKDEVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEF 240 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 G+ LG H GII+YTIGQR+GLG+++G+PL+VV +D ++ V++G Sbjct: 241 RDTRGRFLGYHKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLG------------ 288 Query: 306 REINWLGDGLFEDAVVDGFKCFV-------------KIRSSQDPVPVFVQRNDDG-VYVD 351 GD +F D ++ F+ KIR + ++ +DG V+V Sbjct: 289 -----YGDEVFGDELISYNNNFISIDKLEREMRVKAKIRYNAKEQDAVIRPLEDGKVFVK 343 Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F+ + + GQ+ VFY D V+GGG I Sbjct: 344 FDNPQRAITPGQSVVFYDGDI----VVGGGTIE 372 >gi|331082285|ref|ZP_08331411.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium 6_1_63FAA] gi|330400771|gb|EGG80372.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium 6_1_63FAA] Length = 361 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 142/369 (38%), Positives = 209/369 (56%), Gaps = 17/369 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRV 79 +VVV +SGGVDSSV A LLK+ GYDVIGVT+Q++ + + G CC V DARRV Sbjct: 5 KVVVGLSGGVDSSVAAYLLKKQGYDVIGVTMQIWQEEDNEFQEENGGCCGLSAVDDARRV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +++ +YV ++ + F+ VI F Y G TP PC+ CNR VK+ LL + +GAD Sbjct: 65 AQILDIPYYVMNFRKEFKEKVIDYFNQEYLEGRTPNPCIACNRYVKWESLLKRSLDIGAD 124 Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R +L G R + + +DQ+Y L+ TQ+QL P+G+ KE Sbjct: 125 YIATGHYARVEQLPNGRYAIRNSVTAK-----KDQTYALYNLTQEQLSRTLMPVGEYTKE 179 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R +A+E GL +A K DSQ+ICFV Y ++ EG+ V +G ++G+H G Sbjct: 180 EIRRIAQEAGLPVAHKKDSQEICFVPDNDYAGFIEESTGKKLEEGNYVLEDGTVIGKHKG 239 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 II+YTIGQR+GL ++MG P+FV + +++ V++G E L V + +N++ D Sbjct: 240 IIHYTIGQRKGLNLSMGHPVFVTEIRPDTNEVVIGENEDLFVTDLICDRVNFMAI----D 295 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + +G + KIR + ++ +G V V F + + V GQA VFY + V Sbjct: 296 HLEEGKEFTAKIRYNHPGAVCTLEDLGEGKVKVLFREPQRAVTPGQAVVFYDGEY----V 351 Query: 378 LGGGIISGS 386 GGGII G Sbjct: 352 AGGGIILGK 360 >gi|322420793|ref|YP_004200016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacter sp. M18] gi|320127180|gb|ADW14740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacter sp. M18] Length = 357 Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 156/375 (41%), Positives = 212/375 (56%), Gaps = 27/375 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ VAMSGGVDSS VAALLK G +VIG+ ++L+ +R+G Q DAR Sbjct: 6 KGKKIAVAMSGGVDSSTVAALLKEQGAEVIGINMKLF------RREGE--DPQAKGDARI 57 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + + EE F ++ F S Y GETP PCV CNR VKF LL +LGA Sbjct: 58 VAEYLGIEFHQVHLEEEFARLIMEDFRSQYLGGETPNPCVRCNRYVKFGLLLDKALELGA 117 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197 D LATGHY+R+ DD ++ + L +DQSYFL+ TQ QL + FPLGDM K Sbjct: 118 DYLATGHYVRTSR---DDSGTYHLL-KAAHLAKDQSYFLYTLTQPQLARVLFPLGDMPSK 173 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + VR A G+ +A KSDSQ+ICFV Y +++ G+IVH+NG +LGRHN Sbjct: 174 DEVRKRAAAFGIPVAQKSDSQEICFVPGDDYVAFLEKDGRLAGKSGEIVHVNGTVLGRHN 233 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL--GDGL 315 G YTIGQRRGLG+A EPL+VV +D ++RV+VG L + +++W+ DG Sbjct: 234 GTHRYTIGQRRGLGIAWKEPLYVVAIDAINARVVVGEVGILFAPGLTACDLSWVVPPDG- 292 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSNE 374 + + KIR Q+PV V+ DG V F + + V GQ+ VFY + Sbjct: 293 ------ETVQTTCKIRYRQNPVECSVKLLGDGRGEVRFSEPQKSVTPGQSVVFYQDEE-- 344 Query: 375 ARVLGGGIISGSKRS 389 ++GGG I G+ S Sbjct: 345 --LVGGGRIVGALSS 357 >gi|17228854|ref|NP_485402.1| tRNA-specific 2-thiouridylase MnmA [Nostoc sp. PCC 7120] gi|24638319|sp|Q8YX56|MNMA_ANASP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|17130706|dbj|BAB73316.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Nostoc sp. PCC 7120] Length = 352 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 145/364 (39%), Positives = 211/364 (57%), Gaps = 21/364 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSS AA+L GY+VIG+TL L K KG CC+ + + DA +C+ Sbjct: 3 KVVVGLSGGVDSSTAAAILHNQGYEVIGLTLWLM------KGKGQCCS-EGMIDAAYICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140 + + H V D + F+ ++ + Y AG TPLPC CN+TVKF ++ + +LG D Sbjct: 56 QLGIPHEVVDMRDVFQTHIVDYLVTGYGAGITPLPCSQCNKTVKFGPMVQYASEKLGCDR 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R D+ R + R +D +DQSYFL+ +Q L FPLG+M+K Sbjct: 116 IATGHYARIRY---DEATGRYQLLRAVDRNKDQSYFLYDLSQDLLAASLFPLGEMEKADT 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGI 259 R +A E GL ADK +SQD+C V+ ++ IA + GDIV G++LG+H+G+ Sbjct: 173 RRIATEHGLKTADKPESQDLCLVESNGSMRAF--LDKYIAPKKGDIVDTAGKVLGQHDGV 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQR+GLG+A EPL+VV LD ++V+VG R + +NW+ + E + Sbjct: 231 HHYTIGQRKGLGIAAPEPLYVVELDAVHNKVVVGDRTKATQEECTVNRVNWV--SIAEPS 288 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 ++ RS+ +PV V N V + F++ + + GQA V+Y D N +VLG Sbjct: 289 TPIRAAVQIRYRSAPEPVTVIPLENSR-VRLVFDEPQFSITPGQAAVWY--DGN--KVLG 343 Query: 380 GGII 383 GGII Sbjct: 344 GGII 347 >gi|205815331|sp|B0K584|MNMA1_THEPX RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 Length = 364 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 213/382 (55%), Gaps = 40/382 (10%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDA 76 K+ RVVV MSGGVDSSV A LLK G+DVIGVT+Q++ + +A + +G CC+ V DA Sbjct: 3 KNNRVVVGMSGGVDSSVSAYLLKEQGFDVIGVTMQIWQDKDEEAVRVEGGCCSLSAVNDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV + I + +YV ++++ F+ VI F Y G TP PC+ CN+ +KF +LL + Sbjct: 63 RRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNKYIKFEELLKRAWMI 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 A +ATGHY D+ + R ++ + +D +DQ+Y L+ TQ QL + FPLG K Sbjct: 123 DAYYVATGHYAVKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKYK 179 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ VR+LA+ +GL +A K DSQ+ICFV Y ++ G+ G+ LG H Sbjct: 180 KDEVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGYH 239 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GII+YTIGQR+GLG+++G+PL+VV +D ++ V++G GD +F Sbjct: 240 KGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLG-----------------YGDEVF 282 Query: 317 EDAVVDGFKCFV-------------KIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASG 362 D ++ F+ KIR + ++ +DG V+V F+ + + G Sbjct: 283 GDELISYNNNFISIDKLEREMRVKAKIRYNAKEQDAVIRPLEDGKVFVKFDNPQRAITPG 342 Query: 363 QACVFYTSDSNEARVLGGGIIS 384 Q+ VFY D V+GGG I Sbjct: 343 QSVVFYDGDI----VVGGGTIE 360 >gi|302392703|ref|YP_003828523.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acetohalobium arabaticum DSM 5501] gi|302204780|gb|ADL13458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acetohalobium arabaticum DSM 5501] Length = 361 Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 140/376 (37%), Positives = 218/376 (57%), Gaps = 20/376 (5%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAG 70 L LD+N RVVVAMSGGVDSS+ AA+LK++GY+VIG+T++++ S + + CC+ Sbjct: 2 LGLDQN----RVVVAMSGGVDSSLAAAILKKEGYEVIGITMKIWPSEETPVDNENGCCSL 57 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 V DARRV +++ YV ++E+ F+ VI F + YA TP PCV CN+ +KF+ L Sbjct: 58 SAVNDARRVAYKLDIPFYVINFEDLFKRTVIQNFKNEYAQARTPNPCVVCNKVIKFNAFL 117 Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 + ++LGA +ATGHY +++ +DG R ++ + ++DQ+Y L+ TQ+QL F Sbjct: 118 NKAKELGAYYMATGHY--AKIIQNEDG--RYLLKKSAAPDKDQTYMLYNLTQEQLKHTIF 173 Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250 PL + K+ R+LA++ L + DK +SQ+ICF+ Y ++ + I G I+ + G Sbjct: 174 PLAEYTKQQTRELAKDYDLKVYDKPESQEICFIPDDDYRRFLQENHPEIIEPGPILDVEG 233 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 LG H G+ YTIGQRRGLG+ + L+VV +D + +IVG E + + + EINW Sbjct: 234 NKLGEHKGLPFYTIGQRRGLGLENNKKLYVVDMDPERNALIVGDNEDVFAKELIVEEINW 293 Query: 311 LG-DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFY 368 + + L E V KIR + + ++ V V F + + + GQ+ VFY Sbjct: 294 ISIEKLTEPKEVQA-----KIRYNSPAAEATIYPVEENVAKVVFAEPQRAITPGQSAVFY 348 Query: 369 TSDSNEARVLGGGIIS 384 N+ V+GGG+I Sbjct: 349 ----NQNIVVGGGVIK 360 >gi|291558301|emb|CBL35418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium siraeum V10Sc8a] Length = 358 Score = 246 bits (629), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 138/363 (38%), Positives = 209/363 (57%), Gaps = 13/363 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80 + V+AMSGGVDSSV A L+K+ +D IGVT++L+ N R+ SCC+ DV DAR V Sbjct: 4 KAVIAMSGGVDSSVAAYLMKQRVFDCIGVTMKLFANEDIGISREHSCCSLDDVEDARSVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 ++++ +YVF++ +RF VI F +Y G TP PC+DCNR +KF L ++L D Sbjct: 64 YSLDMPYYVFNFSDRFETDVIDRFIHAYENGITPNPCIDCNRYLKFDKLYMRAKELDRDY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 + TGHY +R+ G++G R ++ + +D +DQSY L+ TQ+QL FPLG+M+K Sbjct: 124 VVTGHY--ARVEKGENG--RFLLKKALDDTKDQSYVLYCLTQEQLSHTIFPLGEMRKSQA 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A G A K+DSQDICFVQ G Y D +++ +GD + NG ++GRH G+I Sbjct: 180 REIAESQGFINARKADSQDICFVQNGSYADFIEQYTGKNYPDGDFLDTNGNVIGRHKGVI 239 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YT+GQR+GLG++ EPL+V ++ + V + + L + +IN + + Sbjct: 240 RYTVGQRKGLGISAPEPLYVKAVNPVINTVTLSYNDGLYSSIVKAGDINLIS----VPEI 295 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 + K+R V +N D + F++ + V GQA V Y D+ V+GG Sbjct: 296 KGEMRVKAKVRYRHTEQWATVTQNSDTITAVFDEPQRAVTCGQALVLYDGDT----VVGG 351 Query: 381 GII 383 G I Sbjct: 352 GTI 354 >gi|205814656|sp|B1X0U7|MNMA_CYAA5 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 355 Score = 246 bits (629), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 150/367 (40%), Positives = 206/367 (56%), Gaps = 27/367 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV AA L GYDVIG+TL L K KG CC+ + + DA +C+ Sbjct: 3 KVVVGLSGGVDSSVAAASLHHQGYDVIGLTLWLM------KGKGQCCS-EGMVDAAFICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + V H++ D E F +I S Y +G TPLPC CNR VKF +L+ ++ L D Sbjct: 56 QLGVPHHIVDTRELFEANIINYLVSGYESGVTPLPCSQCNRAVKFGPMLAYAKEELNCDR 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R D+ RR + R +D +DQSYFL+ +Q L FPLG+ KE Sbjct: 116 IATGHYARIRY---DEQTRRYQLLRAIDRNKDQSYFLYDLSQDILKGTIFPLGEQTKEET 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQ----QGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 R +A E L A K +SQD+C ++ + D + EG+IV L+G++LG H Sbjct: 173 RRIAAEFDLKTASKPESQDLCLIEAHGSMASFLDQYIKPK-----EGEIVDLDGKVLGTH 227 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GI +YTIGQR+GLG+A EPL+VV LD +RVIVG R + + +NW+ + Sbjct: 228 QGIHHYTIGQRKGLGIAAPEPLYVVKLDAVMNRVIVGNRAAGGRSDCTVGRLNWV--SIA 285 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 E + + V+ RS PV + N+ V + F + + G+ GQA VFY + Sbjct: 286 EPSSPITVEVQVRYRSKAVPVSIIPIENNR-VTLQFNEPQFGITPGQAAVFYDGEI---- 340 Query: 377 VLGGGII 383 VLGGGII Sbjct: 341 VLGGGII 347 >gi|254423006|ref|ZP_05036724.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. PCC 7335] gi|196190495|gb|EDX85459.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. PCC 7335] Length = 365 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 148/375 (39%), Positives = 210/375 (56%), Gaps = 22/375 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++VV +SGGVDSSV AA L G++VIG+TL L K KG CC+ + + DA ++CD Sbjct: 3 KIVVGLSGGVDSSVAAATLHNQGHEVIGLTLWLM------KGKGQCCS-EGMTDAAKLCD 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140 + +++ V D E F ++ Y+ G TPLPC CN TVKF +L ++GAD Sbjct: 56 HLGIAYNVVDSREVFEKYIVNYLVEGYSRGVTPLPCSQCNSTVKFGPMLDYAVNEMGADY 115 Query: 141 LATGHYIR--SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R L G R + R +D +DQSYFL+ +Q L +FPLGD K Sbjct: 116 IATGHYARITHNLETG-----RYELRRAVDRNKDQSYFLYDLSQTHLAASQFPLGDTTKS 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 R +A +GL A+K +SQD+C V+Q G + + A GDIV +GQ+LG+H Sbjct: 171 ETRKIAASLGLHTAEKPESQDLCLVEQHGSMKTFLDKFLA--PKPGDIVTTSGQVLGQHE 228 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI +YTIGQRRGLG+A PL+VV LD ++V+VG R+S+ H + +NW+ Sbjct: 229 GIHHYTIGQRRGLGIAAPNPLYVVSLDVGRNQVVVGERDSVTSHGCIVHRVNWVSIAPPT 288 Query: 318 DAVVDGFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + + ++ Q V P D V + F++ + GV GQA V+Y S + R Sbjct: 289 SPISVEVQIRYRSQAVQATVIPTCRVDGTDRVRIIFDEPQFGVTPGQAAVWYDS---KGR 345 Query: 377 VLGGGIISGSKRSDA 391 VLGGGII + D Sbjct: 346 VLGGGIIEPTCSDDT 360 >gi|172038551|ref|YP_001805052.1| tRNA-specific 2-thiouridylase MnmA [Cyanothece sp. ATCC 51142] gi|171700005|gb|ACB52986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cyanothece sp. ATCC 51142] Length = 367 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 150/367 (40%), Positives = 206/367 (56%), Gaps = 27/367 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV AA L GYDVIG+TL L K KG CC+ + + DA +C+ Sbjct: 15 KVVVGLSGGVDSSVAAASLHHQGYDVIGLTLWLM------KGKGQCCS-EGMVDAAFICE 67 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + V H++ D E F +I S Y +G TPLPC CNR VKF +L+ ++ L D Sbjct: 68 QLGVPHHIVDTRELFEANIINYLVSGYESGVTPLPCSQCNRAVKFGPMLAYAKEELNCDR 127 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R D+ RR + R +D +DQSYFL+ +Q L FPLG+ KE Sbjct: 128 IATGHYARIRY---DEQTRRYQLLRAIDRNKDQSYFLYDLSQDILKGTIFPLGEQTKEET 184 Query: 201 RDLAREMGLDIADKSDSQDICFVQ----QGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 R +A E L A K +SQD+C ++ + D + EG+IV L+G++LG H Sbjct: 185 RRIAAEFDLKTASKPESQDLCLIEAHGSMASFLDQYIKPK-----EGEIVDLDGKVLGTH 239 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GI +YTIGQR+GLG+A EPL+VV LD +RVIVG R + + +NW+ + Sbjct: 240 QGIHHYTIGQRKGLGIAAPEPLYVVKLDAVMNRVIVGNRAAGGRSDCTVGRLNWV--SIA 297 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 E + + V+ RS PV + N+ V + F + + G+ GQA VFY + Sbjct: 298 EPSSPITVEVQVRYRSKAVPVSIIPIENNR-VTLQFNEPQFGITPGQAAVFYDGEI---- 352 Query: 377 VLGGGII 383 VLGGGII Sbjct: 353 VLGGGII 359 >gi|73920128|sp|Q72Q44|MNMA_LEPIC RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 375 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 143/381 (37%), Positives = 219/381 (57%), Gaps = 13/381 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDARRV 79 +++VAMSGGVDS+V A LL DGY+VIGV L+ Y + K SCC+ +D+ DAR V Sbjct: 5 KIIVAMSGGVDSAVTAGLLMEDGYEVIGVNLRTWEYEAPACDTTKKSCCSPEDIRDARDV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 ++ + YV E+ F+ VI F Y G+TP PCV+CN VKF L + LG D Sbjct: 65 GISLKIPFYVIKMEKVFQEKVIDRFIEDYQHGKTPNPCVECNTFVKFGALFEKAKALGID 124 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + +G+R I +D+ ++Q+Y+L+ +Q+ L ++ FPLG+M K Sbjct: 125 KIATGHYAR----IARNGERYAI-ANGIDVGKNQAYYLYGLSQENLKNVIFPLGEMTKPE 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +AR MGL +ADKS+SQ+ICF+ + Y +++ N G +G+I+G+H G Sbjct: 180 VRQIARRMGLPVADKSESQEICFIPENDYRKFLEKKNVEFT-PGFFKLKDGRIVGKHKGR 238 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 N+TIGQR+GLG+A PL+V+ ++ + S VI+G + ++N+ G + Sbjct: 239 ENFTIGQRKGLGIAWKNPLYVISIEDDGS-VILGEENETYNESFSVIDLNFQGLAPLNEG 297 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + +C V++R P+ + + +G+ V + GV GQ+ VFY DS+ +L Sbjct: 298 --ESLECRVQVRYRHIPIRCKITKMKEGLIVHPLEDVRGVTPGQSAVFYPLDSD--YLLL 353 Query: 380 GGIISGSKRSDAVEESLLSVI 400 GGIIS V E +SV+ Sbjct: 354 GGIISKGSIQMRVAEPAISVL 374 >gi|258515487|ref|YP_003191709.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Desulfotomaculum acetoxidans DSM 771] gi|257779192|gb|ACV63086.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Desulfotomaculum acetoxidans DSM 771] Length = 362 Score = 246 bits (629), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 214/371 (57%), Gaps = 21/371 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKGSCCAGQDVYDAR 77 K +VVVAMSGGVDSSV AALL +GY++ GVT+Q+++ +K + + CC+ V DAR Sbjct: 2 KGKKVVVAMSGGVDSSVTAALLLEEGYEITGVTMQIWDPEQKDATGEEGCCSLSAVDDAR 61 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV + +N+ +YV ++ ++F +VI F + Y G TP PC+ CNR VKF+ LL +G Sbjct: 62 RVANILNIPYYVLNFRKQFEKSVIDYFLAEYLEGRTPNPCIACNRYVKFTALLQKAISIG 121 Query: 138 ADVLATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 AD +ATGHY R S+ Y R I+ + D+++DQ+Y L+ TQ Q+ PLG Sbjct: 122 ADFIATGHYARLGYSKEY------NRYIIKKSADIKKDQTYVLYNLTQNQIAHTLMPLGV 175 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 KE VR++A + L +A K +SQ+ICFV Y +++ G + + G+++G Sbjct: 176 YTKEQVREMALKYCLPVAAKPESQEICFVPDNDYRSFIQKKTDAEIKPGLFLDIQGKVIG 235 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE-INWLGD 313 H GI YT GQRRGLG+A GE ++VV +D + V +G E I+ RE I+ + Sbjct: 236 EHRGIPYYTYGQRRGLGIAAGERMYVVDIDPARNTVTLGYEED-----IFTRELISGQNN 290 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + D ++ + KIR + P V +D V V F++ + V GQA VFY+ D+ Sbjct: 291 FIAIDKLIAPMEVEAKIRYNSKPYKAVIFSEGEDRVKVVFDEPQRSVTPGQAVVFYSGDT 350 Query: 373 NEARVLGGGII 383 V+GGG I Sbjct: 351 ----VIGGGTI 357 >gi|168183036|ref|ZP_02617700.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum Bf] gi|182673881|gb|EDT85842.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum Bf] Length = 356 Score = 246 bits (628), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 140/366 (38%), Positives = 210/366 (57%), Gaps = 17/366 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LLK GY+VIGVT+Q++ + + +++G CC+ V DARRV Sbjct: 4 KVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARRVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + I + YV ++++ F+ VI F Y G TP PC+ CN+ +KFS L +G D Sbjct: 64 NKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAMGIDY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + + R I+ + D ++DQ+Y L+ TQ QL P G KK + Sbjct: 124 VATGHYAIIKKH-----NDRYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKSKI 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+E+GL + +K DS++ICF+ + +K EG+ V G ILG H GI+ Sbjct: 179 REIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNILGTHKGIV 238 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDA 319 YTIGQR+GL +A G+P++VV ++ + V++G E L + ++ N++ D L E Sbjct: 239 YYTIGQRKGLSIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDTNYIPFDTLKEPM 298 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 V+ KIR SQ P + DDG V V+F + + + GQ+ VFY D ++ Sbjct: 299 EVEA-----KIRYSQIPSKAIITPIDDGRVRVNFHEKQRAITKGQSVVFYKDD----LLI 349 Query: 379 GGGIIS 384 GGGII Sbjct: 350 GGGIIE 355 >gi|237739900|ref|ZP_04570381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 2_1_31] gi|229423508|gb|EEO38555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 2_1_31] Length = 362 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 140/377 (37%), Positives = 208/377 (55%), Gaps = 36/377 (9%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++ D + K ++V VAMSGGVDSS VA LLK+ GYD+ GVT++ + + Sbjct: 15 IEFDSDKKGIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 DA++VCD + + HYV D + F+ V+ F + Y G TP PC+ CNR +KF +L Sbjct: 64 ---DAKKVCDDLGIEHYVLDVRDEFKEKVMDYFVNEYMNGRTPNPCMVCNRHIKFGKMLD 120 Query: 132 VTRQLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 GA +ATGHY + + L VGDD +DQ YFL + +L + Sbjct: 121 FILSKGASFMATGHYTKLKNGLLSVGDDS------------NKDQVYFLSQIQKDRLSKI 168 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVH 247 FP+GD++K +R+LA+++G+ + K DSQ+ICF+ GK + + G A + G+IV Sbjct: 169 IFPVGDLEKPKLRELAKQIGVRVYSKKDSQEICFIDDGKLKEFLIENTKGKAEKPGNIVD 228 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 NG+ILG+H G YTIGQR+GLG++ EPL+V+ DK+++ +IVG E L + Sbjct: 229 KNGKILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDKDNNNIIVGENEDLFKDELVATR 288 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACV 366 +N E +D +CF K RS +++N D V F ++V + GQ V Sbjct: 289 LNLFSVPSLES--LDNLECFAKTRSRDILHKCVLKKNGDNFQVKFIDNKVRAITPGQGIV 346 Query: 367 FYTSDSNEARVLGGGII 383 FY +D N V+ GG I Sbjct: 347 FYNNDGN---VIAGGFI 360 >gi|298490709|ref|YP_003720886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase ['Nostoc azollae' 0708] gi|298232627|gb|ADI63763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase ['Nostoc azollae' 0708] Length = 351 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 147/365 (40%), Positives = 212/365 (58%), Gaps = 23/365 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV AA+L GYDVIG+TL L K KG CC+ + + DA VC+ Sbjct: 3 KVVVGLSGGVDSSVAAAMLHNQGYDVIGLTLWLM------KGKGQCCS-EGMIDAASVCE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + H V D + F+ ++ S Y+ G TPLPC CN+TVKF ++ R+ LG++ Sbjct: 56 QLGIPHEVVDIRDVFQANIVDYLLSGYSMGITPLPCSQCNKTVKFGPMVEYAREKLGSNA 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + R D+ R + R + +DQSYFL+ +Q L FPLG++ K Sbjct: 116 IATGHYAQVRY---DETTGRYKLLRAVYRNKDQSYFLYDLSQDLLSASVFPLGELNKTDT 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R +A E GL ADK +SQD+C V+ G + R + GDI+ G++LG+H+G+ Sbjct: 173 RRIAAEYGLTTADKPESQDLCLVESNGSMRAFLDRYL--VPKPGDILDTTGKVLGQHDGV 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQR+G+G+A EPL+V+ LD ++RV+VG R L +NW+ + E A Sbjct: 231 HHYTIGQRKGIGIAADEPLYVIELDAVNNRVVVGERTKGTQSECTLNRVNWV--SIAEPA 288 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + V+IR PVPV V +D V + F++ + + GQA V+Y D +VL Sbjct: 289 T--PIRAEVQIRYRSQPVPVTVIPLEDFRVRLVFDEPQFSITPGQAAVWYEGD----KVL 342 Query: 379 GGGII 383 GGGII Sbjct: 343 GGGII 347 >gi|326201928|ref|ZP_08191798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium papyrosolvens DSM 2782] gi|325987723|gb|EGD48549.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium papyrosolvens DSM 2782] Length = 359 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 134/366 (36%), Positives = 208/366 (56%), Gaps = 16/366 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK--GSCCAGQDVYDARRV 79 +V++ MSGGVDSSV AA+L + GY+VIGVTLQ++ ++K G CC+ V DARRV Sbjct: 5 KVMLGMSGGVDSSVAAAILLKQGYEVIGVTLQIWQDMDEERQKSEGGCCSLSAVDDARRV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + + +YV ++++ F VI F Y G TP PC+ CNR VK+ +L +G D Sbjct: 65 ANKLGIPYYVLNFKDIFNKTVIEYFKEEYFKGRTPNPCIACNRHVKWQAMLDKALSMGID 124 Query: 140 VLATGHYIRSRLYVGDDGKRRR-IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY + V D K R I+ + + +DQ+Y L+ TQQQL P+GD K+ Sbjct: 125 YIATGHYAK----VMQDAKTGRFILKKSVTDRKDQTYALYNLTQQQLSHTLMPVGDYTKD 180 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A+E+GL +A K DSQ+ICF+ Y + + G + G +LG H G Sbjct: 181 EIREIAKEIGLSVATKPDSQEICFIHDNDYGKFLSENCDKKIVPGKFLDTKGNVLGNHKG 240 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I++YT+GQR+GLG+A G+P+FVV ++ ++ V++G + + ++N++ Sbjct: 241 IVHYTVGQRKGLGIAFGKPMFVVAVNPENNTVVLGDDSEVFSETLTASDLNFIS----IP 296 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 +DG + KIR S P + D+ + V F+ + + GQ+ VFY D V Sbjct: 297 KPIDGMRVNAKIRYSAKEAPATINVIDENRISVVFDIPQRAITPGQSVVFYDGDV----V 352 Query: 378 LGGGII 383 +GGG I Sbjct: 353 VGGGTI 358 >gi|237744375|ref|ZP_04574856.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 7_1] gi|229431604|gb|EEO41816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 7_1] Length = 362 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 142/384 (36%), Positives = 209/384 (54%), Gaps = 37/384 (9%) Query: 6 ATRLNS-LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64 A+ N ++ D + K+++V VAMSGGVDSS VA LLK+ GYD+ GVT++ + + Sbjct: 8 ASEFNKYIEFDSSKKNIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS---- 63 Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 DA++VCD + + HYV D + F+ V+ F S Y G TP PC+ CNR + Sbjct: 64 ----------DAKKVCDDLGIEHYVLDVRDEFKKKVVDYFVSEYMNGRTPNPCMVCNRHI 113 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181 KF +L GA +ATGHY + + L VGDD +DQ YFL Sbjct: 114 KFGKMLDFILSKGASFMATGHYTKLKNGLLSVGDDS------------NKDQVYFLSQIQ 161 Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 + +L + FP+GD++K +R+LA ++G+ + K DSQ+ICFV GK + + G A Sbjct: 162 KDRLNKIIFPVGDLEKSKLRELAEQLGVRVYSKKDSQEICFVDDGKLKEFLIENTKGKAK 221 Query: 242 E-GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300 + G+IV +G ILGRH G YTIGQR+GLG++ EPL+V+ D+ ++ +IVG E L Sbjct: 222 KTGNIVDRDGNILGRHKGFSFYTIGQRKGLGISSEEPLYVLAFDRETNNIIVGKNEDLFK 281 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GV 359 + +N E +D +CF K RS ++++ D V F ++V + Sbjct: 282 DELIATRLNLFSVSSLES--LDNLECFAKTRSRDILHKCLLKKDGDNFQVKFIDNKVRAI 339 Query: 360 ASGQACVFYTSDSNEARVLGGGII 383 GQ VFY +NE V+ GG I Sbjct: 340 TPGQGIVFY---NNEGNVIAGGFI 360 >gi|56752503|ref|YP_173204.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus elongatus PCC 6301] gi|81300318|ref|YP_400526.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus elongatus PCC 7942] gi|81561195|sp|Q5MZ36|MNMA_SYNP6 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|123556790|sp|Q31N30|MNMA_SYNE7 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|56687462|dbj|BAD80684.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Synechococcus elongatus PCC 6301] gi|81169199|gb|ABB57539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus elongatus PCC 7942] Length = 357 Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 210/371 (56%), Gaps = 23/371 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDSSV AALL R GY V G+TL L K KG CC+ + + DA +C+ Sbjct: 3 RVVVGLSGGVDSSVAAALLHRQGYAVEGLTLWLM------KGKGQCCS-EGMVDAAGICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140 + V ++V D +RF+ A++ Y AG TPLPC CNR VKF +L + +L AD Sbjct: 56 QMGVPYHVVDSRDRFQEAIVDYVVQGYEAGITPLPCSQCNRAVKFGPMLDYAKTELKADA 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R + R + R +D +DQ+YFL+ Q L ++FPLG++ K Sbjct: 116 IATGHYARLRQ---NPETGRTELLRAVDRNKDQTYFLYDLPQSVLQSVKFPLGELTKPET 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R +A E+GL A+K +SQD+C + G + R + EG+IV +G++LG+H GI Sbjct: 173 RQIAAELGLRTAEKPESQDLCLAEVHGSMRAFLDRYIE--SREGEIVDQSGRVLGKHTGI 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQR+GLG+A EPL+V+ +D +RV+VG R S + +NW+ + Sbjct: 231 HHYTIGQRKGLGIAHSEPLYVIAIDPIQNRVVVGDRHSAAQSECTVSRVNWVSIAQPDAP 290 Query: 320 VVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + V++R PVP + D + F + + GQA V+Y D R+L Sbjct: 291 I----QAAVQVRYRSAPVPCTVIPLAGDRARILFADPQFSITPGQAAVWYDGD----RLL 342 Query: 379 GGGIISGSKRS 389 GGG+I +R+ Sbjct: 343 GGGLIDRVERT 353 >gi|218439179|ref|YP_002377508.1| tRNA-specific 2-thiouridylase MnmA [Cyanothece sp. PCC 7424] gi|226704768|sp|B7KHE5|MNMA_CYAP7 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|218171907|gb|ACK70640.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cyanothece sp. PCC 7424] Length = 349 Score = 246 bits (627), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 151/366 (41%), Positives = 205/366 (56%), Gaps = 25/366 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDSS AA L GYDV+G+TL L K KG CC+ + + DA +C+ Sbjct: 3 RVVVGLSGGVDSSTAAASLHHQGYDVVGLTLWLM------KGKGQCCS-EGMVDAAFICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + H++ D + F +I S Y G TPLPC CNR VKF +L+ RQ LG D Sbjct: 56 QLGIPHHIVDSRDVFEKNIIDYLVSGYEVGITPLPCSQCNRAVKFGPMLNYARQELGIDR 115 Query: 141 LATGHYIRSRLYVG-DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R +G D+ R + R +D +DQSYFL+ TQ L FPLG+ KE Sbjct: 116 IATGHYAR----IGYDEVSGRYQLLRAVDRNKDQSYFLYDLTQDLLAATLFPLGNQTKEE 171 Query: 200 VRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R +A E GL ADK +SQD+C ++ G + + + EGDIV L G++LG+H G Sbjct: 172 TRRIAHEFGLKTADKPESQDLCLIEAHGSMQEFLDKYIK--QKEGDIVDLKGKVLGKHKG 229 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I +YTIGQR+GLGVA EPL+VV LD +RVIVG R + +NW+ D Sbjct: 230 IHHYTIGQRKGLGVAAPEPLYVVKLDPIMNRVIVGNRADAGQSECNVSRMNWVS---IPD 286 Query: 319 AVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + ++R PV V + D+ + + F++ + G+ GQA V Y D + Sbjct: 287 PSTP-IQTEAQVRYRSFPVRVNVIPLGDNRITLVFDEPQFGITPGQAAVLYQGDI----L 341 Query: 378 LGGGII 383 LGGGII Sbjct: 342 LGGGII 347 >gi|260886459|ref|ZP_05897722.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Selenomonas sputigena ATCC 35185] gi|260863841|gb|EEX78341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Selenomonas sputigena ATCC 35185] Length = 344 Score = 246 bits (627), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 141/358 (39%), Positives = 207/358 (57%), Gaps = 19/358 (5%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSS+ AALL+ GY+V+G+T+QL + + S DARRV D + + Sbjct: 1 MSGGVDSSLCAALLQEQGYEVLGITMQLSDDSREMNGVSSAAT-----DARRVADFLGIE 55 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 H V D+ F + V+ F + Y TP PCV CNR +KF +LLS ++ GAD LATGHY Sbjct: 56 HVVADFRTLFSDKVVDYFLTEYLTARTPNPCVICNRFLKFGELLSFAKEKGADFLATGHY 115 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 +R + +DG + + D ++DQSY L+ ++ L + FPLG +KE R LA++ Sbjct: 116 VR--VEKEEDGSFS--LKKGRDEKKDQSYVLYRLPREILSHILFPLGSYRKEETRALAQK 171 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 + L +A+K++SQ+ICFV + Y + + GDIV + GQILG+H G+ YTIGQ Sbjct: 172 LSLPVANKAESQEICFVPEDDYKAYLSQHRPNRFHTGDIVDMQGQILGQHRGLPFYTIGQ 231 Query: 267 RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKC 326 R+GLG+A PL+V+ LD+ ++RVIVG E L ++ ++NWL + ++ V Sbjct: 232 RKGLGIAAAHPLYVIALDEANNRVIVGKNEELYASSLFASDVNWLMEEPTQEISVHA--- 288 Query: 327 FVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 KIR V V +DG V V F + + V GQ+ VFY+ + R++GG I Sbjct: 289 --KIRYGSREVQANVLPLEDGAVKVSFLEPQRAVTPGQSVVFYSGE----RLVGGATI 340 >gi|307691533|ref|ZP_07633770.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ruminococcaceae bacterium D16] Length = 361 Score = 246 bits (627), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 138/363 (38%), Positives = 197/363 (54%), Gaps = 12/363 (3%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK-ASKRKGSCCAGQDVYDARRVCD 81 + AMSGGVDSS LL++ GYD +G T+ L++ ++ C +DV DA+ V Sbjct: 4 IAAAMSGGVDSSTAVWLLQQAGYDPVGFTMSLFSPDALPPDQRSQCHTARDVADAQAVAQ 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + +SH+ D E F V+ PF +Y G+TP PCV CNR +KF LL +++G +L Sbjct: 64 RLGISHHTLDLSESFCREVMDPFVQAYEQGQTPNPCVLCNRAIKFGALLQAAQEMGCPLL 123 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + D G R ++ + + ++DQSY L+ TQQQL RFPLG + KE +R Sbjct: 124 ATGHYAQVE---QDSGSGRWLLKKALHPDKDQSYVLWTLTQQQLAATRFPLGQLSKEEIR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A E GL A KSDSQDICFV G Y + GD V G +LGRH GII+ Sbjct: 181 AIALEQGLVSARKSDSQDICFVPDGDYASFICHHTGKHYPSGDFVDPQGNVLGRHQGIIH 240 Query: 262 YTIGQRRGLGVAMGEP-LFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YT+GQRRGLGV+ + L+V L + V +G +L + ++N + + + Sbjct: 241 YTLGQRRGLGVSSNQGRLYVTGLSPQDNTVTLGSNAALLHRSLTAGQLNLIAMERLDQPI 300 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 K V+ R ++ P + Q D + F++ + + GQ+ VFY D VLGG Sbjct: 301 QVMAK--VRYRMTEQPA-ILEQTGPDTARLTFQEPQRAITPGQSVVFYQDDV----VLGG 353 Query: 381 GII 383 GII Sbjct: 354 GII 356 >gi|139438964|ref|ZP_01772424.1| Hypothetical protein COLAER_01430 [Collinsella aerofaciens ATCC 25986] gi|133775675|gb|EBA39495.1| Hypothetical protein COLAER_01430 [Collinsella aerofaciens ATCC 25986] Length = 366 Score = 246 bits (627), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 143/369 (38%), Positives = 208/369 (56%), Gaps = 13/369 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+VAMSGGVDSSV A LLK GY+ +G T++L G +D+ DA+ V + Sbjct: 5 RVLVAMSGGVDSSVTAYLLKSQGYECVGATMRL-TCPAPDPTTGMSKVDRDIADAKAVAE 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H+V D ++ F VI F ++Y G TP PC+ CNR +KF LL +G D + Sbjct: 64 RLGIPHHVLDLQQTFDRNVIERFVNAYQEGLTPNPCIICNRHIKFGALLDAALDMGCDYI 123 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE-SV 200 ATGHY ++ DG + + R D ++DQSYFL++ TQ++L FPL + KE V Sbjct: 124 ATGHYAKTSQAA--DGTWQ--LHRGEDPKKDQSYFLYSLTQERLAHTIFPLAGLDKERDV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E G A K++S+DICF+ G Y D ++R A GDIV +G ++GRHNG + Sbjct: 180 RRIAAEQGFTNAQKAESEDICFIPDGDYADYIERRCGHTAAPGDIVWRDGSVVGRHNGAL 239 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQR+GLGVAM P++V +D ++ V +G E L + E W +A Sbjct: 240 RYTIGQRKGLGVAMAHPVYVTGIDAANNTVHLGEAEDLTAVALTADEWIWSAPDARMEAE 299 Query: 321 VD--GFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 +D G + K R Q + R++DG + + F++ + +A GQA V Y D V Sbjct: 300 LDAGGIRVGAKYRYRQKDQAATLTRDEDGQMLLTFDEPQRAIAPGQAVVVYRGDI----V 355 Query: 378 LGGGIISGS 386 LGGG ++G+ Sbjct: 356 LGGGTVTGA 364 >gi|289428353|ref|ZP_06430040.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes J165] gi|289158502|gb|EFD06718.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes J165] Length = 366 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 151/376 (40%), Positives = 213/376 (56%), Gaps = 25/376 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+V+ AMSGGVDS+V AA L G+DV GV L L + + S R+GS CC+ +D +DARR Sbjct: 1 MKVLAAMSGGVDSAVAAARLVEAGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG Sbjct: 60 AADRLGIPFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGY 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R+++ DG + + R +D +DQSY L Q QL FPLG+ K Sbjct: 120 DAVATGHYARTKVV---DGVTK--LYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKM 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHN 257 +VR A +GL +ADK DS DICF+ G D ++ I + +G+I +G ++G HN Sbjct: 175 NVRQEATALGLSVADKPDSNDICFIPDG---DTPGWLSEKIGSADGEIRDESGALVGHHN 231 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G ++TIGQRRGL + + G+P +V+ ++ ++ V+VG E L VH I W Sbjct: 232 GYHHFTIGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWC-- 289 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 V+ + ++R+ DPVP + GV V+ E S GVA GQA VFY D Sbjct: 290 ---SSEPVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD-- 344 Query: 374 EARVLGGGIISGSKRS 389 V+G I G+ R+ Sbjct: 345 --LVVGSATICGTDRA 358 >gi|156741716|ref|YP_001431845.1| tRNA-specific 2-thiouridylase MnmA [Roseiflexus castenholzii DSM 13941] gi|156233044|gb|ABU57827.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseiflexus castenholzii DSM 13941] Length = 383 Score = 246 bits (627), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 152/375 (40%), Positives = 215/375 (57%), Gaps = 20/375 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++++AMSGGVDSS+ AALL G+DV GVTL L+ + CC+ + ARRVC Sbjct: 15 KIMIAMSGGVDSSLAAALLHEAGHDVTGVTLHLWEGDDDRLAESLCCSQEMTESARRVCA 74 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + +YVF+Y+ FR +VI F YA+G TP PC++CNR +KF LL+ R LG D + Sbjct: 75 QLGIPYYVFNYQREFRRSVIEYFLREYASGFTPNPCLECNREIKFRALLARARALGFDYV 134 Query: 142 ATGHYIRSRL---------YVGDDGKRRRI--MCRPMDLERDQSYFLFATTQQQLCDLRF 190 ATGHY R R+ +G +R + + R +D E+DQSY L+ Q L L F Sbjct: 135 ATGHYARIRVDKTPADHSASPSPNGAQRAVYRLLRAVDEEKDQSYMLYMLGQDDLARLMF 194 Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250 P+G+ K VR LA GL A++ +SQDICFV G Y ++++ G I+ L G Sbjct: 195 PIGEYTKAEVRALAAARGLASANRPESQDICFVPGGDYRNLLREERPDALRPGPILDLEG 254 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 + +GRH G+ YTIGQRRGLG+A G+P++V+ LD + VIVGP +L + + + Sbjct: 255 REVGRHQGLPLYTIGQRRGLGIATGQPMYVMALDVARNAVIVGPESALRRTTLRAERVTF 314 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + G + +A F C +IR+ D VP V + V V FE + + GQA VFY Sbjct: 315 V-SGSWPEA---PFDCLAQIRAHADAVPARVTPVEPERVEVRFEHPQRAITPGQAIVFY- 369 Query: 370 SDSNEARVLGGGIIS 384 + A VLGGG I+ Sbjct: 370 ---DGAVVLGGGRIA 381 >gi|50842596|ref|YP_055823.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes KPA171202] gi|289425475|ref|ZP_06427252.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes SK187] gi|81611733|sp|Q6A8Q1|MNMA_PROAC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|50840198|gb|AAT82865.1| probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes KPA171202] gi|289154453|gb|EFD03141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes SK187] Length = 366 Score = 245 bits (626), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 151/376 (40%), Positives = 213/376 (56%), Gaps = 25/376 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+V+ AMSGGVDS+V AA L G+DV GV L L + + S R+GS CC+ +D +DARR Sbjct: 1 MKVLAAMSGGVDSAVAAARLVEAGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG Sbjct: 60 AADRLGIPFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGY 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R+++ DG + + R +D +DQSY L Q QL FPLG+ K Sbjct: 120 DAVATGHYARTKVV---DGVTK--LYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKM 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHN 257 +VR A +GL +ADK DS DICF+ G D ++ I + +G+I +G ++G HN Sbjct: 175 NVRQEAAALGLSVADKPDSNDICFIPDG---DTPGWLSEKIGSADGEIRDESGALVGHHN 231 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G ++TIGQRRGL + + G+P +V+ ++ ++ V+VG E L VH I W Sbjct: 232 GYHHFTIGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWC-- 289 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 V+ + ++R+ DPVP + GV V+ E S GVA GQA VFY D Sbjct: 290 ---SSEPVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD-- 344 Query: 374 EARVLGGGIISGSKRS 389 V+G I G+ R+ Sbjct: 345 --LVVGSATICGTDRA 358 >gi|86157907|ref|YP_464692.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaeromyxobacter dehalogenans 2CP-C] gi|123497474|sp|Q2IHX6|MNMA_ANADE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|85774418|gb|ABC81255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaeromyxobacter dehalogenans 2CP-C] Length = 351 Score = 245 bits (626), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 153/364 (42%), Positives = 200/364 (54%), Gaps = 13/364 (3%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR++VAMSGGVDSS AALL +G++VIGVT+++ + A++ + SCCA DV DAR Sbjct: 1 MRILVAMSGGVDSSTAAALLAGEGHEVIGVTMRVADYSDAARGR-SCCAPDDVEDARAAA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + YV + E RFR VI F Y G TP PCV CN VKF LL+ R LGA Sbjct: 60 RRLGIPFYVANVEARFRERVIDRFVDDYVEGRTPNPCVACNTEVKFDWLLARARALGAK- 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R RR + D +DQSYFL+ Q L D+ FP+G + K +V Sbjct: 119 LATGHYARVEER-----GGRRRLLTAADPAKDQSYFLYGLGQDALGDVLFPVGALAKPAV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R A GL +A+K DSQ+ICFV G D V G+IV G++LGRH+G+ Sbjct: 174 RAEAARAGLAVAEKPDSQEICFVTLGDAGDFVALRAPARVRPGEIVSTAGEVLGRHDGVH 233 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +T+GQRRGLG+A P +VV LD ++RV+VG E R +RE W+ AV Sbjct: 234 RFTVGQRRGLGLAGPAPRYVVRLDAAAARVVVGSAEEASRDRFEVREATWVSGAPPGGAV 293 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 + V+ R + V + G V + GVA GQA VFY D V+GG Sbjct: 294 E--LRVKVRHRHEGERGTVRARAGGAGAEVRLARPVRGVAPGQAAVFYDGDE----VVGG 347 Query: 381 GIIS 384 G I+ Sbjct: 348 GRIA 351 >gi|24214187|ref|NP_711668.1| tRNA-specific 2-thiouridylase MnmA [Leptospira interrogans serovar Lai str. 56601] gi|59799068|sp|Q8F625|MNMA_LEPIN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|24195088|gb|AAN48686.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Leptospira interrogans serovar Lai str. 56601] Length = 375 Score = 245 bits (626), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 142/381 (37%), Positives = 219/381 (57%), Gaps = 13/381 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDARRV 79 +++VAMSGGVDS+V A LL DGY+VIGV L+ Y + K SCC+ +D+ DAR V Sbjct: 5 KIIVAMSGGVDSAVTAGLLMEDGYEVIGVNLRTWEYEAPACDTTKKSCCSPEDIRDARDV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 ++ + YV E+ F+ VI F Y G+TP PCV+CN VKF L + LG D Sbjct: 65 GISLKIPFYVIKMEKVFQEKVIDRFIEDYQHGKTPNPCVECNTFVKFGALFEKAKALGID 124 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + +G+R I +D+ ++Q+Y+L+ +Q+ L ++ FPLG+M K Sbjct: 125 KIATGHYAR----IARNGERYAI-ANGIDVGKNQAYYLYGLSQENLKNVIFPLGEMTKPE 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +AR MGL +ADKS+SQ+ICF+ + Y +++ N G +G+I+G+H G Sbjct: 180 VRQIARRMGLPVADKSESQEICFIPENDYRKFLEKKNVEFT-PGFFKLKDGRIVGKHKGR 238 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 N+TIGQR+GLG+A PL+V+ ++ + S VI+G + ++N+ G + Sbjct: 239 ENFTIGQRKGLGIAWKNPLYVISIEDDGS-VILGEENETYNESFSVIDLNFQGLAPLNEG 297 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + +C V++R P+ + + +G+ V + GV GQ+ VFY DS+ +L Sbjct: 298 --ESLECRVQVRYRHIPIRCKITKMKEGLIVHPLEDVRGVTPGQSAVFYPLDSD--YLLL 353 Query: 380 GGIISGSKRSDAVEESLLSVI 400 GGIIS + E +SV+ Sbjct: 354 GGIISKGSIQMRIVEPAISVL 374 >gi|225573524|ref|ZP_03782279.1| hypothetical protein RUMHYD_01717 [Blautia hydrogenotrophica DSM 10507] gi|225039121|gb|EEG49367.1| hypothetical protein RUMHYD_01717 [Blautia hydrogenotrophica DSM 10507] Length = 362 Score = 245 bits (626), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 133/365 (36%), Positives = 211/365 (57%), Gaps = 15/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS-RKASKRKGSCCAGQDVYDARRVC 80 RVV+ MSGGVDSSV A LLK+ GY+V+GVT++ + +++ G + + + DA+ V Sbjct: 5 RVVIGMSGGVDSSVAAYLLKKAGYEVLGVTMKTWTPVSESADDPGLGGSPEVIEDAKEVA 64 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + +S+YV D++ F + V+ F Y G TP PCV CNR VK+ LL+ ++LGAD Sbjct: 65 RALGISYYVVDFQRDFSDYVVDYFTQEYLEGRTPNPCVVCNRYVKWEALLNKAKELGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY +R+ ++G+ C +DQ+Y L+ TQ QL P+GD KE + Sbjct: 125 IATGHY--ARIVCLENGRYALKTCEVS--AKDQTYALYNLTQAQLAHTLMPVGDYNKEEI 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A ++GL +ADK DSQ+ICF+ Y + +++ +G+ V G ++G+H GII Sbjct: 181 REIASKIGLPVADKPDSQEICFIPDHDYANFIRQRTGKEVCQGNFVTAGGTVVGQHRGII 240 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +YTIGQR+GL ++MG P+FV + ++ V++G + + + +IN++G FE Sbjct: 241 HYTIGQRKGLNLSMGRPVFVTEIRPKTNEVVIGDAQEVFASALRCTKINYMGIEKFE--- 297 Query: 321 VDGFKCFVKIRSSQDPVPVFVQR--NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 +G + KIR + P ++++ D V F + + + GQA VFY E V Sbjct: 298 -EGMELLAKIRYNHKGAPCWIEKVLPDGDVICRFAQPQRAITPGQAVVFY----QEGYVA 352 Query: 379 GGGII 383 GG I Sbjct: 353 AGGTI 357 >gi|34763143|ref|ZP_00144111.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887172|gb|EAA24275.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 362 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 140/377 (37%), Positives = 204/377 (54%), Gaps = 36/377 (9%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L+ + N +++V VAMSGGVDSS VA LLK+ GYD+ GVT++ + + Sbjct: 15 LEFNSNNSNIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 DA++VCD + + HYV D F+ V+ F + Y G TP PC+ CNR +KF +L Sbjct: 64 ---DAKKVCDDLGIEHYVLDVRNEFKEKVMDYFVNEYMNGRTPNPCMVCNRHIKFGKMLD 120 Query: 132 VTRQLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 GA +ATGHY + + L VGDD +DQ YFL + +L + Sbjct: 121 FILSKGASFMATGHYTKLKNGLLSVGDDS------------NKDQVYFLSQIEKDRLSKI 168 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVH 247 FP+GD++K +R+LA++MG+ + K DSQ+ICFV GK + G A + G+IV Sbjct: 169 IFPVGDLEKTKLRELAKQMGVRVYSKKDSQEICFVDDGKLKQFLIENTKGEAEKPGNIVD 228 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 NG ILG+H G YTIGQR+GLG++ EPL+V+ DK ++ +IVG E L + Sbjct: 229 KNGNILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDKKTNNIIVGENEDLFKDELIATR 288 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACV 366 +N E +D +CF K RS ++++ + V F ++V + GQ V Sbjct: 289 LNLFSVSSLES--LDNLECFAKTRSRDILHKCLLKKDGNNFQVKFIDNKVRAITPGQGIV 346 Query: 367 FYTSDSNEARVLGGGII 383 FY +NE V+ GG I Sbjct: 347 FY---NNEGNVIAGGFI 360 >gi|291296936|ref|YP_003508334.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Meiothermus ruber DSM 1279] gi|290471895|gb|ADD29314.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Meiothermus ruber DSM 1279] Length = 362 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 145/369 (39%), Positives = 208/369 (56%), Gaps = 31/369 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+ AMSGGVDSSV AALLK+ GY+VIG ++ + K +CC+ Y+ARRV D Sbjct: 4 RVLAAMSGGVDSSVSAALLKQQGYEVIGAMMRFWPDNKKDDCFETCCSPDAAYEARRVAD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + Y+ DY E F+ +I PF + Y GETP PCV+CN VKF LL R LG D + Sbjct: 64 IIGIPFYLLDYREEFQEKIIDPFIAGYQQGETPNPCVNCNTRVKFDSLLKKARMLGCDYV 123 Query: 142 ATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 ATGHY+ +R LY GD K DQ+YFL+ T ++ + + FP+G ++K Sbjct: 124 ATGHYVINRDGGLYRGDPKK-------------DQTYFLWGTPKEAIPHMLFPVGHLEKP 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR LA + GL A K +SQ+ICFV QG D + + + A G ++ L GQ +G HN Sbjct: 171 QVRALAEQFGLPTAKKPESQNICFV-QGDLKDFLAQHLS--ARPGPLIDLETGQQIGEHN 227 Query: 258 GIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G YT+GQ++GLG+ +VV ++ ++ VIVGPRE+ + +RE+N L Sbjct: 228 GAQFYTVGQKKGLGLWKSHLERYVVQVNTTTNEVIVGPREACMWGGLEIREVN-----LL 282 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375 +A + V++R PVP V+ + G + + + + V GQ+ V Y + Sbjct: 283 VEAQDLPERLEVQVRYRTRPVPARVEAMEAGRMVIRLAEPQFAVTPGQSAVLYQGE---- 338 Query: 376 RVLGGGIIS 384 R+LGGG I+ Sbjct: 339 RLLGGGFIT 347 >gi|205822073|sp|A7NK07|MNMA_ROSCS RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 371 Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 152/375 (40%), Positives = 215/375 (57%), Gaps = 20/375 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++++AMSGGVDSS+ AALL G+DV GVTL L+ + CC+ + ARRVC Sbjct: 3 KIMIAMSGGVDSSLAAALLHEAGHDVTGVTLHLWEGDDDRLAESLCCSQEMTESARRVCA 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + +YVF+Y+ FR +VI F YA+G TP PC++CNR +KF LL+ R LG D + Sbjct: 63 QLGIPYYVFNYQREFRRSVIEYFLREYASGFTPNPCLECNREIKFRALLARARALGFDYV 122 Query: 142 ATGHYIRSRL---------YVGDDGKRRRI--MCRPMDLERDQSYFLFATTQQQLCDLRF 190 ATGHY R R+ +G +R + + R +D E+DQSY L+ Q L L F Sbjct: 123 ATGHYARIRVDKTPADHSASPSPNGAQRAVYRLLRAVDEEKDQSYMLYMLGQDDLARLMF 182 Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250 P+G+ K VR LA GL A++ +SQDICFV G Y ++++ G I+ L G Sbjct: 183 PIGEYTKAEVRALAAARGLASANRPESQDICFVPGGDYRNLLREERPDALRPGPILDLEG 242 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 + +GRH G+ YTIGQRRGLG+A G+P++V+ LD + VIVGP +L + + + Sbjct: 243 REVGRHQGLPLYTIGQRRGLGIATGQPMYVMALDVARNAVIVGPESALRRTTLRAERVTF 302 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + G + +A F C +IR+ D VP V + V V FE + + GQA VFY Sbjct: 303 V-SGSWPEAP---FDCLAQIRAHADAVPARVTPVEPERVEVRFEHPQRAITPGQAIVFY- 357 Query: 370 SDSNEARVLGGGIIS 384 + A VLGGG I+ Sbjct: 358 ---DGAVVLGGGRIA 369 >gi|28211134|ref|NP_782078.1| tRNA-specific 2-thiouridylase MnmA [Clostridium tetani E88] gi|75542384|sp|Q894S7|MNMA2_CLOTE RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|28203574|gb|AAO36015.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Clostridium tetani E88] Length = 358 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 139/366 (37%), Positives = 210/366 (57%), Gaps = 17/366 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LLK GY+VIG T+Q++ K +R+G CC+ V DARRV Sbjct: 7 KVLVGMSGGVDSSVAAYLLKEQGYEVIGATMQIWQDDKEFIEREGGCCSLSAVADARRVA 66 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + I + YV ++++ F+ VI F Y G TP PCV CN+ +KFS L LG D Sbjct: 67 NKIGIPFYVMNFKDAFKKNVIDYFVDEYMEGRTPNPCVACNKFIKFSSFLDKAMTLGIDY 126 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + + R I+ + D ++DQ+Y L+ TQ QL P G KK + Sbjct: 127 VATGHYA-----IIEKQNNRYIVRKSEDDKKDQTYALYNLTQFQLERTLMPCGRYKKSEI 181 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+++GL + +K DSQ+ICF+ + +K +G+ V +G +LG H GI+ Sbjct: 182 REIAKKIGLRVHNKKDSQEICFIPDNDHGKYIKNRFPSKVRQGNFVDKSGNVLGTHKGIV 241 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDA 319 YTIGQR+GL +A+G+P++VV ++ + V++G + L + +++N++ D L E Sbjct: 242 YYTIGQRKGLDIALGKPMYVVDINPFRNEVVLGNLDDLLNTELIAKDVNYIPFDNLKEPM 301 Query: 320 VVDGFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 V+ KIR SQ P V +D V V+F + + + GQ+ VFY D ++ Sbjct: 302 EVEA-----KIRYSQIPSKAVITPMENDKVKVNFTEKQRAITKGQSVVFYKGD----LLI 352 Query: 379 GGGIIS 384 GGGII Sbjct: 353 GGGIIE 358 >gi|296328692|ref|ZP_06871209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154291|gb|EFG95092.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 362 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 139/377 (36%), Positives = 203/377 (53%), Gaps = 36/377 (9%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L D N ++R+ VAMSGGVDSS VA LLK+ GYD+ GVT++ + + Sbjct: 15 LKFDSNNSNIRIGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 DA++VCD + + HY+ D + F+ V+ F + Y G TP PC+ CNR +KF +L Sbjct: 64 ---DAKKVCDDLGIEHYILDVRDEFKEKVVDYFVNEYMNGRTPNPCMVCNRHIKFGKMLD 120 Query: 132 VTRQLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 GA +ATGHY + + L VGDD +DQ YFL + +L + Sbjct: 121 FILSKGASFMATGHYTKLKNGLLSVGDDS------------NKDQVYFLSQIEKNKLSKI 168 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVH 247 FP+GD++K +R+LA ++G+ + K DSQ+ICFV GK + G A + G+IV Sbjct: 169 IFPVGDLEKTKLRELAEQLGVRVYSKKDSQEICFVDDGKLKQFLIENTKGKAEKPGNIVD 228 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 NG ILG+H G YTIGQR+GLG++ EPL+V+ D+ ++ +IVG E L + Sbjct: 229 KNGNILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDRKTNNIIVGQNEDLFRDELIATR 288 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACV 366 +N E +D +CF K RS ++++ D V F ++V + GQ V Sbjct: 289 LNLFSVSSLEG--LDNLECFAKTRSRDILHKCLLKKDGDNFQVKFIDNKVRAITPGQGIV 346 Query: 367 FYTSDSNEARVLGGGII 383 FY +D N V+ GG I Sbjct: 347 FYNNDGN---VIAGGFI 360 >gi|310780562|ref|YP_003968894.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ilyobacter polytropus DSM 2926] gi|309749885|gb|ADO84546.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ilyobacter polytropus DSM 2926] Length = 376 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 141/358 (39%), Positives = 205/358 (57%), Gaps = 23/358 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY---NSRKASKRKGSCCAGQDVYDARRV 79 V V MSGGVDSS VA +LK+ GY+VIG+T++ + + +CC+ D+YDA+RV Sbjct: 23 VAVGMSGGVDSSTVAYMLKKQGYNVIGITMKHWSGMDELSEDSNSKTCCSLDDIYDAKRV 82 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD +++ HYV + +E F+ V+ F Y G TP PC+ CNR +K LL ++GAD Sbjct: 83 CDDLDIPHYVINLKEPFKEKVVDYFIEEYEKGRTPNPCMVCNRYIKLGKLLEYGIKMGAD 142 Query: 140 VLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 +ATGHY + + LY+GDD K +DQ YFL ++ L L FP+GD++ Sbjct: 143 FVATGHYAKIKNGNLYMGDDPK------------KDQVYFLSQVKRENLKYLMFPVGDLE 190 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG-IALEGDIVHLNGQILGR 255 K VR +A +G+ + K DSQ++CF++ GK + + + G + EGDIV +G++LG+ Sbjct: 191 KPQVRKIAEYLGVRVYAKRDSQEVCFIEDGKLKEFLVDMTDGRVEKEGDIVTKDGKVLGK 250 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H G YTIGQR+GLG+ PL+V+ LD +RVIVG E L + ++ IN L Sbjct: 251 HKGFAFYTIGQRKGLGIQHETPLYVLKLDSKKNRVIVGGNEDLFKNELFADSINVLSFDK 310 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV-GVASGQACVFYTSD 371 ED +DG +C K RS V+ D+ + V F ++V V GQ V Y D Sbjct: 311 IED--IDGIECQAKTRSRDILHLCKVEVIKDNLIKVKFLDNKVRAVTPGQGLVLYDFD 366 >gi|85860332|ref|YP_462534.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Syntrophus aciditrophicus SB] gi|123517346|sp|Q2LWA6|MNMA1_SYNAS RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 gi|85723423|gb|ABC78366.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Syntrophus aciditrophicus SB] Length = 372 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 142/363 (39%), Positives = 200/363 (55%), Gaps = 19/363 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV++A+SGGVDSSV A LLK +GY+V GVT+ L + + K CC + + DAR VC+ Sbjct: 22 RVLLAISGGVDSSVAALLLKEEGYEVAGVTMCL--GVREEENKVRCCGREAIEDARGVCE 79 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + HYV DY VI F Y G TP PC+DCNR +KF LL R +G D L Sbjct: 80 ILGIPHYVLDYAPLLETCVIDKFVREYRLGRTPNPCIDCNRYLKFGHLLDSARTMGFDYL 139 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + + + R I+ + DL +DQ+YFL+ L + FPL D K+ VR Sbjct: 140 ATGHYAKI-----ERKESRWILKKAKDLVKDQTYFLYPIPVAALEHILFPLADRTKDEVR 194 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++AR+ L IA+K +SQD+CFV Q Y D ++ + G IV +G++LG H+G + Sbjct: 195 EIARQALLPIAEKPESQDLCFVTQDSYRDFLQEQGCPVH-PGPIVDRSGRVLGEHSGTVF 253 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQR GLG++ PL+VV +D + VIV +E + + E+NWL ++A Sbjct: 254 YTIGQRHGLGISSPFPLYVVAIDVAGNSVIVSGKEDVYAQGLVAGEMNWLTPERPQEAE- 312 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 +IR + + D + V F + + V GQA V Y D VLGGG Sbjct: 313 ------ARIRHRKRTCSCRIVPEGDRIRVYFAEDQDAVTPGQAVVLYQEDE----VLGGG 362 Query: 382 IIS 384 +I Sbjct: 363 VIE 365 >gi|295130676|ref|YP_003581339.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes SK137] gi|291375276|gb|ADD99130.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes SK137] Length = 366 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 151/376 (40%), Positives = 213/376 (56%), Gaps = 25/376 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+V+ AMSGGVDS+V AA L G+DV GV L L + + S R+GS CC+ +D +DARR Sbjct: 1 MKVLAAMSGGVDSAVAAARLVEAGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG Sbjct: 60 AADRLGIPFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGY 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R+++ DG + + R +D +DQSY L Q QL FPLG+ K Sbjct: 120 DAVATGHYARTKVV---DGVTK--LYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKM 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHN 257 +VR A +GL +ADK DS DICF+ G D ++ I + +G+I +G ++G HN Sbjct: 175 NVRQEAAALGLSVADKPDSNDICFIPDG---DTRGWLSEKIGSADGEIRDESGALVGHHN 231 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G ++TIGQRRGL + + G+P +V+ ++ ++ V+VG E L VH I W Sbjct: 232 GYHHFTIGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWC-- 289 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 V+ + ++R+ DPVP + GV V+ E S GVA GQA VFY D Sbjct: 290 ---SSEPVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD-- 344 Query: 374 EARVLGGGIISGSKRS 389 V+G I G+ R+ Sbjct: 345 --LVVGSATICGTDRA 358 >gi|237741734|ref|ZP_04572215.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 4_1_13] gi|294785652|ref|ZP_06750940.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 3_1_27] gi|229429382|gb|EEO39594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 4_1_13] gi|294487366|gb|EFG34728.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 3_1_27] Length = 362 Score = 244 bits (624), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 139/377 (36%), Positives = 205/377 (54%), Gaps = 36/377 (9%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L+ + N +++V VAMSGGVDSS VA LLK+ GYD+ GVT++ + + Sbjct: 15 LEFNSNNSNIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 DA++VCD + + HYV D F+ V+ F + Y G TP PC+ CNR +KF +L Sbjct: 64 ---DAKKVCDDLGIEHYVLDVRNEFKEKVMDYFVNEYMNGRTPNPCMVCNRHIKFGKMLD 120 Query: 132 VTRQLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 GA +ATGHY + + L VGDD +DQ YFL + +L + Sbjct: 121 FILSKGASFMATGHYTKLKNGLLSVGDDS------------NKDQVYFLSQIEKDRLSKI 168 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVH 247 FP+GD++K +R+LA++MG+ + K DSQ+ICFV GK + G A + G+IV Sbjct: 169 IFPVGDLEKTKLRELAKQMGVRVYSKKDSQEICFVDDGKLKQFLIENTKGEAEKPGNIVD 228 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 NG ILG+H G YTIGQR+GLG++ EPL+V+ DK ++ +IVG E L + Sbjct: 229 KNGNILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDKKTNNIIVGENEDLFKDELIATR 288 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACV 366 +N E +D +CF K RS ++++++ V F ++V + GQ V Sbjct: 289 LNLFSVSSLES--LDNLECFAKTRSRDILHKCLLKKDENNFQVKFIDNKVRAITPGQGIV 346 Query: 367 FYTSDSNEARVLGGGII 383 FY ++E V+ GG I Sbjct: 347 FY---NDEGNVIAGGFI 360 >gi|160944760|ref|ZP_02091987.1| hypothetical protein FAEPRAM212_02275 [Faecalibacterium prausnitzii M21/2] gi|158443944|gb|EDP20948.1| hypothetical protein FAEPRAM212_02275 [Faecalibacterium prausnitzii M21/2] Length = 367 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 132/371 (35%), Positives = 204/371 (54%), Gaps = 13/371 (3%) Query: 16 KNPKDM-RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDV 73 +NP + R ++AMSGGVDSSV A L+++ GYD G+T++L +N +CC+ +D+ Sbjct: 4 QNPANRPRALIAMSGGVDSSVAACLMQQAGYDCTGITMRLTHNETLGQSGYQTCCSEKDI 63 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA V +++ + V D+ FR +I F Y AG TP PC+DCN+ +KF LL Sbjct: 64 EDAAEVAFALDMPYQVLDFTADFRAQIIEKFIRVYEAGGTPNPCIDCNKYMKFRHLLDWA 123 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + G + + TGHY R D R ++ + +D +DQSY L+ TQ+QL +R PLG Sbjct: 124 EEHGMEYVVTGHYARVEQ---DAATGRWLLKKGLDEGKDQSYVLYNLTQEQLAHIRLPLG 180 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 + K VR++A+E A K DSQDICFV G Y +++ GD + +G+++ Sbjct: 181 ALHKTEVREIAQEHSFINAQKHDSQDICFVPDGDYARFMEQFTGKHYPAGDFLDRSGKVV 240 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G H+G + YT+GQR+GLG+A+G P++V D ++ V VGP L +Y ++NW+ Sbjct: 241 GTHSGAVRYTLGQRKGLGLALGAPVYVCGKDMQANTVTVGPESELFDSIVYAEDVNWIAI 300 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 A+ + + R Q V ++G ++F++ + GQA V Y D Sbjct: 301 ----PALTGPLRVTARTRYHQAEQQATVYPAENGFRLEFDQPQRAPTPGQAAVLYQGDV- 355 Query: 374 EARVLGGGIIS 384 VLGGG I+ Sbjct: 356 ---VLGGGTIT 363 >gi|266623735|ref|ZP_06116670.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium hathewayi DSM 13479] gi|288864455|gb|EFC96753.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium hathewayi DSM 13479] Length = 369 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 139/366 (37%), Positives = 203/366 (55%), Gaps = 16/366 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + + G CC V DARRV Sbjct: 15 KVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEETEVQEESGGCCGLSAVDDARRV 74 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + +YV +++E FR VI F Y G TP PC+ CNR VK+ LL + +GAD Sbjct: 75 AWDLGIPYYVMNFKEEFRENVIDYFVDEYRNGRTPNPCIACNRYVKWESLLKRSLDIGAD 134 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY +R+ ++G R + + +DQ+Y L+ TQ QL P+G K+ Sbjct: 135 YIATGHY--ARIEQLENG--RYALKMSVTAAKDQTYALYNLTQYQLAHTLMPVGAYSKDQ 190 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R++A + L +A K DSQ+ICF+ Y ++ +G+ V L+G +LGRH GI Sbjct: 191 IREIADRINLKVAHKPDSQEICFIPDHDYARFIEENTGKEPAKGNFVDLDGNVLGRHEGI 250 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFED 318 +YT+GQR+GL ++MG P+FV + ++ V++G + + INW+ DGL Sbjct: 251 THYTVGQRKGLNLSMGHPVFVTEIRPETNEVVIGNSADVFSDTLRCSRINWMAIDGLHGG 310 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + KIR S P ++ +D V F++ + + GQA VFY E V Sbjct: 311 EM----RVTAKIRYSHKGAPCTIREVGEDLVECRFDEPQRAITPGQAVVFYL----ENYV 362 Query: 378 LGGGII 383 GGG I Sbjct: 363 AGGGTI 368 >gi|198282965|ref|YP_002219286.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666259|ref|YP_002425168.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidithiobacillus ferrooxidans ATCC 23270] gi|259495823|sp|B7J5X6|MNMA_ACIF2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|259495824|sp|B5ENY8|MNMA_ACIF5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|198247486|gb|ACH83079.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518472|gb|ACK79058.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 352 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 144/370 (38%), Positives = 209/370 (56%), Gaps = 22/370 (5%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D + ++A+SGGVDS+V A L++ GY++ GVT++L+ + CC +D+ DA + Sbjct: 3 DKKALIALSGGVDSAVAALLMQGQGYELTGVTMRLWP-------RSRCCDEKDIEDAAEI 55 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C + + + V DY E FR V+ F + Y AG TP PC CN+ +KF LL+ +LGA Sbjct: 56 CARLGIPYTVLDYREAFRRQVVDVFVAEYQAGRTPNPCARCNQFLKFDALLAEGEKLGAT 115 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +LATGHY +RL G + R D +DQSYFLFA L LRFP+G M K+ Sbjct: 116 MLATGHY--ARLAETSSGT---ALLRGRDHAKDQSYFLFAIGAGILSRLRFPVGGMNKDE 170 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI--ALEGDIVHLNGQILGRHN 257 VR +AR+ GL +A K DSQDICFV G Y ++ AG+ A EG++V +GQ+LG H Sbjct: 171 VRAMARKHGLPVAAKQDSQDICFVPDGDYRRFLEDY-AGLDMAQEGEMVDSSGQVLGHHP 229 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 G +++T+GQR+GLG +P +V+ LD +RVIVG + L + L E NWL D Sbjct: 230 GTLHFTVGQRKGLGGGSDQPRYVLALDPAQNRVIVGGEDELYRGVVSLAECNWLTD--LS 287 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 ++ RS + + + +D + F + + V GQA V Y + R+ Sbjct: 288 PGETHAVTVKLRYRSRAESAMLHLL-SDARAELRFREPQRAVTPGQAAVCYQGE----RL 342 Query: 378 LGGGIISGSK 387 LGGG I G++ Sbjct: 343 LGGGWIQGTE 352 >gi|294783011|ref|ZP_06748335.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 1_1_41FAA] gi|294479889|gb|EFG27666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 1_1_41FAA] Length = 362 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 144/387 (37%), Positives = 211/387 (54%), Gaps = 38/387 (9%) Query: 2 VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61 V SE ++ D DK K ++V VAMSGGVDSS VA LLK+ GYD+ GVT++ + + Sbjct: 7 VASEFSKYIEFDSDK--KGIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS- 63 Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 DA++VC + + HYV D + F+ V+ F + Y G TP PC+ CN Sbjct: 64 -------------DAKKVCGDLGIEHYVLDVRDEFKEKVMDYFVNEYMNGRTPNPCMVCN 110 Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLF 178 R +KF +L GA +ATGHY + + L VGDD +DQ YFL Sbjct: 111 RHIKFGKMLDFILSKGASFMATGHYTKLKNGLLSVGDDS------------NKDQVYFLS 158 Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG 238 + +L + FP+GD++K +R+LA+++G+ + K DSQ+ICFV GK + + G Sbjct: 159 QIQKDRLSKIIFPVGDLEKPKLRELAKQIGVRVYSKKDSQEICFVDDGKLKEFLIENTKG 218 Query: 239 IALE-GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES 297 A + G+I+ NG+ILG+H G YTIGQR+GLG++ EPL+V+ DK+++ +IVG E Sbjct: 219 KAEKPGNIIDKNGKILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDKDNNNIIVGENED 278 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV 357 L + +N E +D +CF K RS +++N D V F ++V Sbjct: 279 LFKDELTATRLNLFSVPSLES--LDNLECFAKTRSRDILHKCVLKKNGDNFQVKFIDNKV 336 Query: 358 -GVASGQACVFYTSDSNEARVLGGGII 383 + GQ VFY +D N V+ GG I Sbjct: 337 RAITPGQGIVFYNNDGN---VIAGGFI 360 >gi|239626056|ref|ZP_04669087.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridiales bacterium 1_7_47_FAA] gi|239520286|gb|EEQ60152.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridiales bacterium 1_7_47FAA] Length = 358 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 140/367 (38%), Positives = 207/367 (56%), Gaps = 18/367 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK+ GYDVIGVT+Q++ + +G CC V DARRV Sbjct: 4 KVVVGMSGGVDSSVAAWLLKQQGYDVIGVTMQIWQDEDTDVQEAEGGCCGLSAVDDARRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + +YV +++E FR V+ F Y AG TP PC+ CNR VK+ LL + +GAD Sbjct: 64 AMDLGIPYYVMNFKEEFRTNVMDYFVGEYVAGRTPNPCIACNRYVKWESLLRRSMAIGAD 123 Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY + +L G R + + ++DQ+Y L+ TQ+QL P+G K+ Sbjct: 124 YIATGHYAQICQLPSG-----RYALKTSVTAQKDQTYALYNLTQEQLARTLMPVGSYHKD 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R +A ++GL +A K DSQ+ICF+ + ++ EG+ V L G +LG+H G Sbjct: 179 EIRRMAEDIGLQVAHKPDSQEICFIPDHDHARFIEAYTGMQVPEGNFVDLEGNVLGKHKG 238 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFE 317 I +YTIGQR+GL ++MG P+FVV + ++ V++G + + + + ++NW+ DGL Sbjct: 239 ISHYTIGQRKGLNLSMGHPVFVVEIRPETNEVVIGEGKDVFTNVLCCDKLNWMAIDGLHG 298 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 +++ + KIR S P ++ G V F + GQA VFY D Sbjct: 299 ESM----EVTAKIRYSHKGSPCTIREIGRGLVECRFHEPVRAATPGQAVVFYDGD----Y 350 Query: 377 VLGGGII 383 V GGG I Sbjct: 351 VAGGGTI 357 >gi|119486285|ref|ZP_01620344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lyngbya sp. PCC 8106] gi|119456498|gb|EAW37628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lyngbya sp. PCC 8106] Length = 352 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 144/368 (39%), Positives = 207/368 (56%), Gaps = 26/368 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSS AA+L Y+V+G+TL L K KG CC+ + + DA +C+ Sbjct: 3 KVVVGLSGGVDSSAAAAILHHQDYEVVGLTLWLM------KGKGQCCS-EGMVDAAFICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGADV 140 + V H++ D E F+ ++ Y+AG TPLPC CN+TVKF +L +LG D+ Sbjct: 56 QLGVPHHIVDSRELFQTHIVDYLVEGYSAGITPLPCSQCNKTVKFGPMLRHAKEELGIDL 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R D+ R + R +D +DQSYFL+ TQ L + FPLG++ K Sbjct: 116 IATGHYARIRY---DEQNNRYQLLRAVDKSKDQSYFLYDLTQDLLAGVVFPLGEVLKTET 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R +A + L ADK +SQD+C V+ G + + G GDIV NG++LG+H GI Sbjct: 173 RRIAAQYNLKTADKPESQDLCLVEANGSMQAFLDKYITGKT--GDIVDENGKVLGQHEGI 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQR+GLG+A PL+V+ +D + VIVG RE+ ++ +NW+ Sbjct: 231 HHYTIGQRKGLGIAAPNPLYVIGIDAGRNLVIVGDRENATQTECIIKRVNWVSIAPPTSP 290 Query: 320 VVDGFKCFVKIRSSQDPVPVFV----QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + + V+IR P PV V D+ V + F++ G+ GQA V+Y + Sbjct: 291 I----RAEVQIRYRTKPQPVTVVPLNSAEDEQVKLIFDEPIFGITPGQAAVWYDGEI--- 343 Query: 376 RVLGGGII 383 VLGGGII Sbjct: 344 -VLGGGII 350 >gi|120403098|ref|YP_952927.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium vanbaalenii PYR-1] gi|166235070|sp|A1T6X1|MNMA_MYCVP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|119955916|gb|ABM12921.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium vanbaalenii PYR-1] Length = 357 Score = 244 bits (623), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 155/374 (41%), Positives = 206/374 (55%), Gaps = 24/374 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+VAMSGGVDSSV AA + G+DV+GV L L +S + R GS CC+ +D DARR Sbjct: 1 MRVLVAMSGGVDSSVAAARMVDAGHDVVGVHLAL-SSAPGTLRTGSRGCCSKEDAGDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ +RF+ VI F SYA GETP PCV CN +KFS L + LG Sbjct: 60 VADVLGIPFYVWDFADRFKEDVIDDFVESYARGETPNPCVRCNERIKFSALSARALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY R DG+ RR +D ++DQSY L T +QL FP+GD K Sbjct: 120 DALATGHYARLT-----DGRLRRA----VDHDKDQSYVLAVLTAEQLRHAVFPIGDTPKP 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257 ++R+ A GL +ADK+DS DICF+ G D + A I + G +V G +L H+ Sbjct: 171 AIREEAARRGLAVADKADSHDICFIPSG---DTRAFLGARIGVRRGSVVDATGAVLAEHD 227 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+ +TIGQR+GLG+ G P +V +D + V VG LEV + L E Sbjct: 228 GVHGFTIGQRKGLGIPGPGPDGRPRYVTGIDAETGTVHVGDVTDLEVTSL-LGEAPVFTS 286 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 G+ DA V+ C V++R+ V + D + V GVA GQ V Y SD + Sbjct: 287 GVAPDAPVE---CAVQVRAHGGVVDAVAELRDGALEVSLRTPLRGVAPGQTLVLYRSDPD 343 Query: 374 EARVLGGGIISGSK 387 VLG IS ++ Sbjct: 344 GDEVLGSATISAAR 357 >gi|167772092|ref|ZP_02444145.1| hypothetical protein ANACOL_03466 [Anaerotruncus colihominis DSM 17241] gi|167665890|gb|EDS10020.1| hypothetical protein ANACOL_03466 [Anaerotruncus colihominis DSM 17241] Length = 349 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 141/362 (38%), Positives = 196/362 (54%), Gaps = 22/362 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V+VAMSGGVDSSV A LLKR GY+V G T +L+N C +V DAR VCD Sbjct: 5 VLVAMSGGVDSSVAALLLKRQGYEVAGATFELFNG----------CPEGNVRDARAVCDC 54 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + HYVFDY F+ V+ F SY G+TP PCV CNR+VKF L +LG ++ Sbjct: 55 LGIRHYVFDYRALFQKRVLEHFVDSYLTGKTPNPCVACNRSVKFGAFLQDAMRLGYTHIS 114 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY D R + R +DQSY L+ +Q+QL L P+ K+ VR Sbjct: 115 TGHYAGVAY---DQTAGRYCLQRSRQTRKDQSYVLYHLSQEQLSRLLLPVDGYTKDEVRA 171 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 A E GL + K+DSQDICFV G Y ++R + G+ + G+++GRH G+++Y Sbjct: 172 FAAEAGLPVQAKADSQDICFVPDGDYAAFIERYTGQASEPGNFIDDEGRVIGRHRGVLHY 231 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQRRGLGVA G +V LD ++ V + S+ ++ ++ + + E + Sbjct: 232 TIGQRRGLGVAFGTHRYVRRLDPGANTVTLSDESSVFCDQLIADDLRLIAFDVLETPL-- 289 Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + KIR + P P + D+G ++V F+ + + GQA VFY D RVLGG Sbjct: 290 --RACAKIRYAHTPAPATITMLDEGRIHVRFDTPQRAITPGQAVVFYDDD----RVLGGA 343 Query: 382 II 383 I Sbjct: 344 TI 345 >gi|323141806|ref|ZP_08076673.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Phascolarctobacterium sp. YIT 12067] gi|322413729|gb|EFY04581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Phascolarctobacterium sp. YIT 12067] Length = 357 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 136/364 (37%), Positives = 206/364 (56%), Gaps = 13/364 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80 + ++AMSGGVDSSV A ++ Y+ GVT++L+ N + SCC+ DV DAR V Sbjct: 4 KALIAMSGGVDSSVSALMMLEQDYECTGVTMKLFANEDIGVSKANSCCSIDDVADARSVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 ++ + +YVF++ +RF VI F +Y G TP PC+DCNR +KF L ++LG D Sbjct: 64 TSLGMLYYVFNFADRFERDVIDRFVDAYVNGRTPNPCIDCNRYLKFDQLFVRAQELGCDY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 + TGHY + D+ K R ++ + +D +DQSY L+A TQ+QL FPLG + K V Sbjct: 124 VVTGHYAQISY---DEAKGRYLLRKAVDPLKDQSYVLYALTQEQLAHAMFPLGGLYKTQV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A + G A K DSQDICF+Q G Y D ++ G+ V G +LGRH GII Sbjct: 181 REIAEKHGFVNAQKHDSQDICFIQTGTYADFIEARLGRKFNPGNFVDEAGNVLGRHKGII 240 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +YT+GQR+GLG+A+ +P++V +D ++ VI+ E L + + IN + DA+ Sbjct: 241 HYTVGQRKGLGLALPQPMYVKEIDTKNNAVILTTNEGLFTKNVTAKNINLID----CDAI 296 Query: 321 VDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + + +IR Q+ Q + D + + F+ + + GQ+ V Y D V+G Sbjct: 297 TEPRRVKARIRYHQQEQWATVTQPDADTLQLVFDDPQRAITKGQSVVMYDGDV----VVG 352 Query: 380 GGII 383 GG I Sbjct: 353 GGTI 356 >gi|314923325|gb|EFS87156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL001PA1] Length = 396 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 152/381 (39%), Positives = 215/381 (56%), Gaps = 25/381 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 ++V+ AMSGGVDS+V AA L G+DV GV L L + + S R+GS CC+ +D +DARR Sbjct: 31 VKVLAAMSGGVDSAVAAARLVETGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFDARR 89 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG Sbjct: 90 AADRLGIPFYVWDFSDRFVVEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGY 149 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R+++ DG + + R +D +DQSY L Q QL FPLG+ K Sbjct: 150 DAVATGHYARTKVI---DGVTK--LYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKV 204 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257 +VR A +GL +ADK DS DICF+ G D ++ I L +G+I +G ++G HN Sbjct: 205 NVRQEAAALGLSVADKPDSNDICFIPDG---DTPGWLSDKIGLADGEIRDESGALVGHHN 261 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G ++TIGQRRGL + + G+P +V+ ++ ++ V+VG E L VH I + W Sbjct: 262 GYHHFTIGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEVIRPVWC-- 319 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 V+ + ++R+ DPVP + GV V+ E S GVA GQA VFY D Sbjct: 320 ---SGEPVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAVVFYDGD-- 374 Query: 374 EARVLGGGIISGSKRSDAVEE 394 V+G I G+ R+ E Sbjct: 375 --LVVGSATICGTDRAGVKAE 393 >gi|260494072|ref|ZP_05814203.1| tRNA methyl transferase [Fusobacterium sp. 3_1_33] gi|260198218|gb|EEW95734.1| tRNA methyl transferase [Fusobacterium sp. 3_1_33] Length = 362 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 139/377 (36%), Positives = 206/377 (54%), Gaps = 36/377 (9%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++ D + K+++V VAMSGGVDSS VA LLK+ GYD+ GVT++ + + Sbjct: 15 IEFDSSKKNIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 DA++VCD + + HYV D + F+ V+ F S Y G TP PC+ CNR +KF +L Sbjct: 64 ---DAKKVCDDLGIEHYVLDVRDEFKKKVVDYFVSEYMNGRTPNPCMVCNRHIKFGKMLD 120 Query: 132 VTRQLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 GA +ATGHY + + L VGDD +DQ YFL + +L + Sbjct: 121 FILSKGASFMATGHYTKLKNGLLSVGDDS------------NKDQVYFLSQIQKDRLNKI 168 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVH 247 FP+GD++K +R+LA ++G+ + K DSQ+ICFV GK + + G A + G+IV Sbjct: 169 IFPVGDLEKSKLRELAEQLGVRVYSKKDSQEICFVDDGKLKEFLIENTKGKAEKTGNIVD 228 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 +G ILGRH G YTIGQR+GLG++ EPL+V+ D+ ++ +IVG E L + Sbjct: 229 KDGNILGRHKGFSFYTIGQRKGLGISSEEPLYVLAFDRETNNIIVGKNEDLFKDELIATR 288 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACV 366 +N E +D +CF K RS ++++ D V F ++V + GQ V Sbjct: 289 LNLFSVSSLES--LDNLECFAKTRSRDILHKCLLKKDGDNFQVKFIDNKVRAITPGQGIV 346 Query: 367 FYTSDSNEARVLGGGII 383 FY ++E V+ GG I Sbjct: 347 FY---NDEGNVIAGGFI 360 >gi|312898012|ref|ZP_07757421.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Megasphaera micronuciformis F0359] gi|310620937|gb|EFQ04488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Megasphaera micronuciformis F0359] Length = 358 Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 146/366 (39%), Positives = 200/366 (54%), Gaps = 16/366 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK---GSCCAGQDVYDARRV 79 + VAMSGGVDSSV A LLK GY+VIG+TL+L+ A K + +CC+ V DA+ V Sbjct: 5 IAVAMSGGVDSSVTAGLLKEQGYEVIGITLRLWEEEPACKVERNIHACCSLDSVNDAKAV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + HY D+ + FR+ VI F SYA G+TP PC+ CNR +KF L +Q GAD Sbjct: 65 ADVLGIRHYTLDFRDVFRHDVIDYFIDSYAHGKTPNPCIACNRFIKFGLLWDQAQQFGAD 124 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +LATGHY R V D+ ++ + R D +DQSY L+ TQ L + FP+ D++K Sbjct: 125 LLATGHYAR---IVYDNERKIYTLRRGKDERKDQSYVLYQLTQDLLKHIIFPMADLEKTK 181 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R+LA+E GL + +K +SQDICF+ Y +K+ I G G+ +G H GI Sbjct: 182 TRELAKEWGLPVFNKPESQDICFIPDNDYKGFLKKEAPYIFKAGRFTDGQGRTVGTHKGI 241 Query: 260 INYTIGQRR-GLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 YTIGQRR G P +VV LD+ ++ V VG L I ++ W E Sbjct: 242 AAYTIGQRRGLNLGGPGGPYYVVSLDEKNNEVRVGSERELFSAEIKAHDVTWT-----ET 296 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + FK + KIR + P V + + V F+K + +GQA V Y D RVL Sbjct: 297 VREEPFKAYGKIRYAAQAAPCTVYPAGNEMKVVFDKPQRAATAGQALVLYEDD----RVL 352 Query: 379 GGGIIS 384 GGG I+ Sbjct: 353 GGGTIT 358 >gi|256845062|ref|ZP_05550520.1| tRNA methyl transferase [Fusobacterium sp. 3_1_36A2] gi|256718621|gb|EEU32176.1| tRNA methyl transferase [Fusobacterium sp. 3_1_36A2] Length = 362 Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 139/377 (36%), Positives = 204/377 (54%), Gaps = 36/377 (9%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L+ + N +++V VAMSGGVDSS VA LLK+ GYD+ GVT++ + + Sbjct: 15 LEFNSNNSNIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 DA++VCD + + HYV D F+ V+ F + Y G TP PC+ CNR +KF +L Sbjct: 64 ---DAKKVCDDLGIEHYVLDVRNEFKEKVMDYFVNEYMNGRTPNPCMVCNRHIKFGKMLD 120 Query: 132 VTRQLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 GA +ATGHY + + L VGDD +DQ YFL + +L + Sbjct: 121 FILSKGASFMATGHYTKLKNGLLSVGDDS------------NKDQVYFLSQIEKDRLSKI 168 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVH 247 FP+GD++K +R+LA+++G+ + K DSQ+ICFV GK + G A + G+IV Sbjct: 169 IFPVGDLEKTKLRELAKQIGVRVYSKKDSQEICFVDDGKLKQFLIENTKGEAEKPGNIVD 228 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 NG ILG+H G YTIGQR+GLG++ EPL+V+ DK ++ +IVG E L + Sbjct: 229 KNGNILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDKKTNNIIVGENEDLFKDELIATR 288 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACV 366 +N E +D +CF K RS ++++ + V F ++V + GQ V Sbjct: 289 LNLFSVSSLES--LDNLECFAKTRSRDILHKCLLKKDGNNFQVKFIDNKVRAITPGQGIV 346 Query: 367 FYTSDSNEARVLGGGII 383 FY +NE V+ GG I Sbjct: 347 FY---NNEGNVIAGGFI 360 >gi|153953713|ref|YP_001394478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium kluyveri DSM 555] gi|219854333|ref|YP_002471455.1| hypothetical protein CKR_0990 [Clostridium kluyveri NBRC 12016] gi|205813712|sp|A5N749|MNMA_CLOK5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|146346594|gb|EDK33130.1| TrmU [Clostridium kluyveri DSM 555] gi|219568057|dbj|BAH06041.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 356 Score = 243 bits (620), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 135/364 (37%), Positives = 207/364 (56%), Gaps = 15/364 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGSCCAGQDVYDARRVC 80 +VVV MSGGVDSSV A LLK GY+VIGVT+Q++ + + CC+ V DA+ V Sbjct: 4 KVVVGMSGGVDSSVAAHLLKEQGYEVIGVTMQVWQEDDYYEDMESGCCSLSAVEDAKMVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +N+ HYV +++E F+ VI F Y G+TP PC+ CN+ +KF +LL LGAD Sbjct: 64 YHLNIPHYVMNFKEAFKKNVIDYFIQEYMEGKTPNPCIACNKYIKFDELLKRAMDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + D R + + D +DQ+Y L+ TQ QL P G KKE + Sbjct: 124 VATGHYATVEK-IND----RYTLRKSKDHNKDQTYALYNLTQFQLAHTLMPCGIYKKEEI 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++ARE+GL + K DS++ICF+ + +KRI EG+ + G +LG+H GI+ Sbjct: 179 REIAREIGLMVHSKRDSEEICFIPDNDHGAYIKRITKDKVKEGNFIDKEGNVLGKHKGIV 238 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YT+GQR+GLG++ G P +V+ + ++ V++G E + + +++N+L FE+ + Sbjct: 239 YYTLGQRKGLGLSFGVPTYVIDIKPYTNEVVLGSEEDIFKTDLVAKDVNFLP---FEN-L 294 Query: 321 VDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 K KIR S P + +++ + V F + + GQ+ VFY + ++G Sbjct: 295 TSPMKVEAKIRYSSKPAEATISCLDEERIKVKFTDRQRAITKGQSVVFYKDNI----LIG 350 Query: 380 GGII 383 GGII Sbjct: 351 GGII 354 >gi|328907390|gb|EGG27156.1| tRNA-specific 2-thiouridylase MnmA [Propionibacterium sp. P08] Length = 366 Score = 243 bits (620), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 151/381 (39%), Positives = 212/381 (55%), Gaps = 25/381 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+V+ AMSGG+DS+V AA L G+DV GV L L + + S R+GS CC+ +D +DARR Sbjct: 1 MKVLAAMSGGIDSAVAAARLVEAGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG Sbjct: 60 AADRLGIPFYVWDFSDRFAAEVIDPFIAEYQAGRTPNPCLRCNERIKFAALLERGLDLGY 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY ++++ DG + + R +D +DQSY L Q QL FPLG+ K Sbjct: 120 DAVATGHYAQAKVI---DGVTK--LYRSVDPGKDQSYVLAVLDQDQLAHSLFPLGNSLKT 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHN 257 VR A +GL +ADK DS DICF+ G D ++ I + +G+I +G ++GRHN Sbjct: 175 DVRQEAAALGLSVADKPDSNDICFIPDG---DTPGWLSEKIGSADGEIRDESGALVGRHN 231 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G +TIGQRRGL + + G+P +V+ ++ ++ V+VG E L V+ I W Sbjct: 232 GYHRFTIGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVYHIEAIRPVWC-- 289 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 D + V++R+ DPVP V GV V+ E GVA GQA VFY D Sbjct: 290 ---SGEPADTWHGQVQVRAHGDPVPATVSTVPSGVSVELEDPLRGVAPGQAAVFYDGD-- 344 Query: 374 EARVLGGGIISGSKRSDAVEE 394 V+G I G+ R+ E Sbjct: 345 --LVVGSATICGTDRAGTTAE 363 >gi|282853930|ref|ZP_06263267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes J139] gi|282583383|gb|EFB88763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes J139] Length = 366 Score = 243 bits (620), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 151/376 (40%), Positives = 213/376 (56%), Gaps = 25/376 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+V+ AMSGGVDS+V AA L G+DV GV L L + + S R+GS CC+ +D +DARR Sbjct: 1 MKVLAAMSGGVDSAVAAARLVEAGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG Sbjct: 60 AADRLGIPFYVWDFSDRFVVEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGY 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R+++ DG + + R +D +DQSY L Q QL FPLG+ K Sbjct: 120 DAVATGHYARTKVI---DGVTK--LYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKV 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHN 257 +VR A +GL +ADK DS DICF+ G D ++ I + +G+I +G ++G HN Sbjct: 175 NVRQEAAALGLSVADKPDSNDICFIPDG---DTPGWLSDKIGSADGEIRDESGALVGHHN 231 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G ++TIGQRRGL + + G+P +V+ ++ ++ V+VG E L VH I W Sbjct: 232 GYHHFTIGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWC-- 289 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 V+ + ++R+ DPVP + GV V+ E S GVA GQA VFY D Sbjct: 290 ---SGEPVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAVVFYDGD-- 344 Query: 374 EARVLGGGIISGSKRS 389 V+G I G+ R+ Sbjct: 345 --LVVGSATICGTDRA 358 >gi|163815111|ref|ZP_02206492.1| hypothetical protein COPEUT_01267 [Coprococcus eutactus ATCC 27759] gi|158449520|gb|EDP26515.1| hypothetical protein COPEUT_01267 [Coprococcus eutactus ATCC 27759] Length = 363 Score = 243 bits (619), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 144/378 (38%), Positives = 210/378 (55%), Gaps = 19/378 (5%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGS 66 + +D DK V V MSGGVDSSV A LLK GY+VIGVT+Q++ R Sbjct: 1 MKLIDTDKK----TVCVGMSGGVDSSVAALLLKEQGYNVIGVTMQIWQDEDRDVVSAHAG 56 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 CC V DARRV +++ +YV +++E F+ VI F Y G TP PC+ CNR VK+ Sbjct: 57 CCGLSAVDDARRVASQLDIPYYVMNFKEEFKKYVIDYFVDEYKHGRTPNPCIACNRYVKW 116 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 LL+ +G D +ATGHY +R+ +G+ R +D +DQ+Y L+ TQ+QL Sbjct: 117 ESLLTRCMAIGGDYIATGHY--ARIIQLPNGRYTLQEARGID--KDQTYALYNLTQEQLA 172 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 P+G+ K +R +A + GL +A K DSQDICFV G Y ++ A+ GD V Sbjct: 173 RTLMPVGEYSKPEIRKIAEDHGLMVAHKPDSQDICFVPDGDYAGYLENEAGLKAVPGDFV 232 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 ++G ++GRH GII+YTIGQR+GLG+AMG P+FVV + +++V++G + R+ Sbjct: 233 DIHGNVIGRHKGIIHYTIGQRKGLGLAMGHPVFVVDIIPETNQVVIGENGDVFSERLTCN 292 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365 +N++ + + KIR + +++ ++D V F++ V GQA Sbjct: 293 RLNFMSIA----DLTEPMHVKAKIRYNHKGSMCTIRKIDEDLVEAVFDEPVRAVTKGQAV 348 Query: 366 VFYTSDSNEARVLGGGII 383 VFY D VLGGG I Sbjct: 349 VFYECD----HVLGGGSI 362 >gi|313113898|ref|ZP_07799457.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Faecalibacterium cf. prausnitzii KLE1255] gi|310623777|gb|EFQ07173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Faecalibacterium cf. prausnitzii KLE1255] Length = 367 Score = 243 bits (619), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 134/364 (36%), Positives = 198/364 (54%), Gaps = 12/364 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80 R ++AMSGGVDSSV A L+++ GYD G+T++L N +CC+ +D+ DA V Sbjct: 11 RALIAMSGGVDSSVAAWLMQQAGYDCTGITMRLTRNETLGQSGFHTCCSEKDIEDAAEVA 70 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +++ + V D+ FR +I F Y AG TP PC+DCN+ +KF LL R G + Sbjct: 71 YAMDIPYEVLDFTADFREQIIEKFVRVYEAGGTPNPCIDCNKYMKFRHLLDWARAHGMEY 130 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 + TGHY R D+ R ++ + +D +DQSY L+ TQ+QL +R PLG + K V Sbjct: 131 VVTGHYARVEQ---DEATGRFLLKKGLDEGKDQSYVLYNLTQEQLAHIRLPLGGLHKTEV 187 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A + A K DSQDICFV G Y ++ GD + +G+++G HNG + Sbjct: 188 REIAEQHKFVNARKHDSQDICFVPDGDYARFMEDFTGKHYPAGDFLDESGRVVGPHNGAV 247 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQR+GLG+AMG P++V D ++ V VGP E L +Y E+NW+ + Sbjct: 248 RYTIGQRKGLGLAMGAPVYVCGKDMQANTVTVGPEEMLFDRIVYADEVNWIAI----PEL 303 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 + + R Q V + G ++F++ + GQA V Y D+ VLGG Sbjct: 304 TGPLRVTARTRYHQVEQAATVYPAECGFRLEFDQPQRAPTPGQAVVLYQGDT----VLGG 359 Query: 381 GIIS 384 G I+ Sbjct: 360 GTIT 363 >gi|188586399|ref|YP_001917944.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Natranaerobius thermophilus JW/NM-WN-LF] gi|205816905|sp|B2A5K1|MNMA_NATTJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|179351086|gb|ACB85356.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 368 Score = 243 bits (619), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 142/367 (38%), Positives = 205/367 (55%), Gaps = 16/367 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY----NSRKASKRKGSCCAGQDVYDAR 77 RV+VAMSGGVDSSV A +LK GY+VIG ++++ + + CC+ V+DA+ Sbjct: 6 RVLVAMSGGVDSSVAALMLKEQGYEVIGAHMRIWYREEDEELYEQNVKGCCSLAAVHDAK 65 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV D I + YV +++E F + V+ F Y G TP PC+ CNR +K+ + L L Sbjct: 66 RVADKIGIPFYVLNFKEPFYDWVVKNFIDEYLQGRTPNPCIACNRFIKWEEFLKRAMALE 125 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D +ATGHY + V D+ K R ++ R D +DQSY L TQ+QL FPLGD K Sbjct: 126 CDYIATGHYSK---IVYDNLKNRYLLYRGKDKTKDQSYMLSQLTQEQLARTLFPLGDYYK 182 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 E VR++A + L +ADK DSQ+ICFV Y + ++ + G I+ G LG H Sbjct: 183 EDVRNIAEQNELGVADKPDSQEICFVPNNDYGEFLQSVVPEHINPGPILDAQGNKLGEHK 242 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI YTIGQRRGLG+++G P++V+ +D +++ +IVG +E L + EIN + E Sbjct: 243 GIAFYTIGQRRGLGISLGRPVYVIDIDADNNALIVGDKEELYSDGLIAEEINLIPYEQIE 302 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 +++ +C KIR + V +Q +D + V F + V GQ FY D Sbjct: 303 NSI--DIEC--KIRYNSRNVSSTLQPYGNDQLLVKFNQPVEAVTPGQGVTFYQDD----L 354 Query: 377 VLGGGII 383 V+GGG I Sbjct: 355 VIGGGTI 361 >gi|19704100|ref|NP_603662.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|81479855|sp|Q8R5X3|MNMA1_FUSNN RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 gi|19714304|gb|AAL94961.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 362 Score = 242 bits (618), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 139/377 (36%), Positives = 202/377 (53%), Gaps = 36/377 (9%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L D N ++RV VAMSGGVDSS VA LLK+ GYD+ GVT++ + + Sbjct: 15 LKFDSNNSNIRVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 DA++VCD + + HY+ D + F+ V+ F + Y G TP PC+ CNR +KF +L Sbjct: 64 ---DAKKVCDDLGIEHYILDVRDEFKEKVVDYFVNEYMNGRTPNPCMVCNRYIKFGKMLD 120 Query: 132 VTRQLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 A +ATGHY + + L VGDD +DQ YFL + +L + Sbjct: 121 FILSKDASFMATGHYTKLKNGLLSVGDDS------------NKDQVYFLSQIEKNKLSKI 168 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVH 247 FP+GD++K +R+LA ++G+ + K DSQ+ICFV GK + G A + G+IV Sbjct: 169 IFPVGDLEKTKLRELAEQLGVRVYSKKDSQEICFVDDGKLKQFLIENTKGKAEKPGNIVD 228 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 NG ILG+H G YTIGQR+GLG++ EPL+V+ D+ ++ +IVG E L + Sbjct: 229 KNGNILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDRKTNNIIVGQNEDLFRDELIATR 288 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACV 366 +N E +D +CF K RS ++++ D V F ++V + GQ V Sbjct: 289 LNLFSVSSLEG--LDNLECFAKTRSRDILHKCLLKKDGDNFQVKFIDNKVRAITPGQGIV 346 Query: 367 FYTSDSNEARVLGGGII 383 FY +D N V+ GG I Sbjct: 347 FYNNDGN---VIAGGFI 360 >gi|282896191|ref|ZP_06304214.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Raphidiopsis brookii D9] gi|281198880|gb|EFA73758.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Raphidiopsis brookii D9] Length = 350 Score = 242 bits (618), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 144/372 (38%), Positives = 205/372 (55%), Gaps = 37/372 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV AA+L GYDVIG+TL L K KG CC+ + + DA +C Sbjct: 4 KVVVGLSGGVDSSVAAAILHNQGYDVIGLTLWLM------KGKGQCCS-EGMVDAATICQ 56 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140 +++ H + D + F+ ++ S Y+AG TPLPC CNRTVKF +L + +L +D Sbjct: 57 QLDIPHEIVDMRDVFQTNIVDYLVSGYSAGITPLPCSQCNRTVKFGPMLQYAKDKLQSDT 116 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R D R + R D +DQSYFL+ +Q+ L FPLG++ K Sbjct: 117 IATGHYARIAY---DHRTERYQLLRAFDRNKDQSYFLYDLSQELLAGTIFPLGELNKNDT 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQG--------KYFDVVKRINAGIALEGDIVHLNGQI 252 R +A E GL ADK +SQD+C V+ KY GDIV +G++ Sbjct: 174 RKIASEYGLKTADKPESQDLCLVESNGSMRAFLDKYLS---------PKPGDIVDSDGKV 224 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 LG+H+G+ +YTIGQR+GLG+A EPL+V+ LD ++ V+VG R + +NW+ Sbjct: 225 LGKHDGVHHYTIGQRKGLGIAAAEPLYVIKLDTVNNLVVVGDRTKGTEKECTVERVNWV- 283 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + E + V+IR PV + D V + F++ + + GQA V+Y D Sbjct: 284 -SMVEPRGT--IRGEVQIRYRSQPVLATIIPGEKDCVQMVFDEPQFSITPGQAAVWYEGD 340 Query: 372 SNEARVLGGGII 383 +VLGGGII Sbjct: 341 ----KVLGGGII 348 >gi|313674593|ref|YP_004052589.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Marivirga tractuosa DSM 4126] gi|312941291|gb|ADR20481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Marivirga tractuosa DSM 4126] Length = 378 Score = 242 bits (617), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 142/386 (36%), Positives = 210/386 (54%), Gaps = 19/386 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDA 76 K RV+VAMSGG+DSS+ A LL GY+VIG+T++ Y S +SK++ CC+ + DA Sbjct: 3 KKGRVLVAMSGGIDSSLAAVLLHEQGYEVIGMTMKTWDYASSGSSKKETGCCSLDSINDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + + HY+ D E F + VI F Y AG TP PCV CN +K+ LL +L Sbjct: 63 RNLAVNLGFPHYILDIREEFGDYVIDHFTDEYLAGRTPNPCVLCNTHIKWDSLLRRADKL 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 G D +ATGHY + R G R I+ R DL +DQSY L+ +Q+ L PLGD+ Sbjct: 123 GCDYIATGHYAKVREENG-----RYIISRGKDLNKDQSYALWGVSQESLSRTILPLGDLT 177 Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252 K +R +A + G ++ +KS+S +ICFV Y +KR G+ E G+ V +G + Sbjct: 178 KPEIRKMAEDKGFYELVNKSESYEICFVPDNDYRGFLKRRVEGLEEEVKGGEFVLEDGTV 237 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G H G YT+GQR+GLG+A+G P++V + K+ +RV++G + L +Y++ + Sbjct: 238 VGTHEGYPFYTVGQRKGLGIALGYPVYVTEIQKDKNRVVLGTFDELSRDGMYVKNLVMSK 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 ED + K+R + D P +++ D + V F +A GQA VFY D Sbjct: 298 YTSLEDRL----DTVTKVRYNDDGAPAVIEQVGDTMKVFFGNGVPAIAPGQAAVFYEGDD 353 Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398 V+GGG I S ++ LS Sbjct: 354 ----VIGGGWIHSSFNQQKLKNEALS 375 >gi|254416844|ref|ZP_05030593.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Microcoleus chthonoplastes PCC 7420] gi|196176390|gb|EDX71405.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Microcoleus chthonoplastes PCC 7420] Length = 359 Score = 242 bits (617), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 147/374 (39%), Positives = 213/374 (56%), Gaps = 25/374 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV AA L GY+V+G+TL L K KG CC+ + + DA +C+ Sbjct: 8 KVVVGLSGGVDSSVAAATLHHQGYEVVGLTLWLM------KGKGQCCS-EGMVDAAFICE 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + H++ D E F+ ++ S Y +G TPLPC CN+TVKF +L+ R+ LG D Sbjct: 61 QLGIPHHIVDSREVFQANIVDYLVSGYESGITPLPCSQCNKTVKFGPMLAYARETLGIDK 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R D R + R +D +DQSYFL+ +Q+ L FPLG+++K Sbjct: 121 IATGHYARIRY---DAKSDRYQLLRAVDSNKDQSYFLYDLSQELLAASIFPLGELEKTQT 177 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNGQILGRHNGI 259 R LA E L A K +SQD+C V+ + + ++ I+ GDIV NG++LG+H GI Sbjct: 178 RQLAAEYQLKTAAKPESQDLCLVE--SHGSMRTFLDQYISQTTGDIVDTNGKVLGQHQGI 235 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQR+GLG+A EPL+VV +D ++RVIVG R S + +NW+ Sbjct: 236 HHYTIGQRKGLGIAAPEPLYVVAIDAGANRVIVGDRASATQPDCTVGRVNWISI----HP 291 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + V++R PV V V D + + + F++ + + GQA V Y + +L Sbjct: 292 PTTPIQASVQVRYRSHPVDVTVIPLDGNRMKLIFDQPQFSITPGQAAVLYDGE----MLL 347 Query: 379 GGGIISGSKRSDAV 392 GGGII + DAV Sbjct: 348 GGGII--ERNQDAV 359 >gi|225570688|ref|ZP_03779711.1| hypothetical protein CLOHYLEM_06788 [Clostridium hylemonae DSM 15053] gi|225160515|gb|EEG73134.1| hypothetical protein CLOHYLEM_06788 [Clostridium hylemonae DSM 15053] Length = 361 Score = 242 bits (617), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 135/369 (36%), Positives = 205/369 (55%), Gaps = 15/369 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ R + G CC V DARRV Sbjct: 5 KVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEEERAVQEENGGCCGLSAVDDARRV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + +YV ++ + F+ VI F Y G TP PC+ CNR VK+ LL + +GAD Sbjct: 65 AAQLGIPYYVMNFRQEFKEHVIDYFVDEYTHGRTPNPCIACNRYVKWESLLKRSMDIGAD 124 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R +R + D +DQ+Y L+ TQ+QL P+G +KE Sbjct: 125 YIATGHYARIEQL---PNERYALKVSATDT-KDQTYALYNLTQEQLRRTLMPVGMYEKEE 180 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R +A +GL++A+K DSQDICFV G Y +++ +L G+ V +G ++G H GI Sbjct: 181 IRRIAGSLGLEVANKPDSQDICFVPDGDYASYIEKEAGVKSLPGNFVTSDGTVVGTHKGI 240 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 ++YT+GQR+GLG+++G P+FV+ + ++ ++VG E + +N++ G Sbjct: 241 VHYTVGQRKGLGLSLGHPVFVLDIRPGTNEIVVGSNEESMSRYVRADNVNFMSVG----G 296 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + + + KIR + ++ D + F++ + GQA V Y + VL Sbjct: 297 LPEKKRVWAKIRYNHRGAWCTAEKTGPDEIVCTFDEPQRAATPGQAVVLYDGEY----VL 352 Query: 379 GGGIISGSK 387 GGG I G + Sbjct: 353 GGGTIIGDE 361 >gi|268316383|ref|YP_003290102.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Rhodothermus marinus DSM 4252] gi|262333917|gb|ACY47714.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Rhodothermus marinus DSM 4252] Length = 382 Score = 242 bits (617), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 141/370 (38%), Positives = 201/370 (54%), Gaps = 20/370 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS---CCAGQDVYDARR 78 RV+VAMSGGVDSSV AALL GY+V+G+T++ ++ + R G CC+ + + DAR Sbjct: 6 RVLVAMSGGVDSSVTAALLHEQGYEVVGITMKTWDYTSSGVRTGKEVGCCSLESMNDARA 65 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + H++ D E F + VI F Y AG TP PC+ CN +K++ LL +LG Sbjct: 66 VAVRLGFPHFIVDIREEFGDWVIERFTEEYLAGRTPNPCILCNTHIKWAALLRRADRLGC 125 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R D+ R ++ R DL +DQSY L+ Q+ L PLGD K Sbjct: 126 DYIATGHYARIRY---DESLGRYVISRGRDLNKDQSYVLWGIAQEHLARTLLPLGDYTKP 182 Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILG 254 +R +A EMG + +A K DS +ICF+ Y +++ + + G V +G ++G Sbjct: 183 EIRRMAAEMGFERLAQKPDSYEICFIPDNDYRRFLRQRVPDLDRKVGPGKFVLKDGTVVG 242 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-D 313 H G YTIGQR GLG+A+G P +V ++D ++ + VGPRE L R+ R+IN + Sbjct: 243 THRGYPFYTIGQRHGLGLALGYPAYVTHIDSETNTITVGPREELLRQRLVARQINLVKYP 302 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 L E+ G KIR + P V + D ++V F + + GQA V Y D Sbjct: 303 DLREERPAIG-----KIRYKDEGAPCLVWQEGDALHVAFAEPRPAITPGQAVVLYEGDD- 356 Query: 374 EARVLGGGII 383 VL GG I Sbjct: 357 ---VLAGGWI 363 >gi|295104304|emb|CBL01848.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Faecalibacterium prausnitzii SL3/3] Length = 367 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 202/371 (54%), Gaps = 13/371 (3%) Query: 16 KNPKDM-RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDV 73 +NP + ++AMSGGVDSSV A L+++ GYD G+T++L +N +CC+ +D+ Sbjct: 4 QNPANRPHALIAMSGGVDSSVAACLMQQAGYDCTGITMRLTHNETLGQSGYQTCCSEKDI 63 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA V +++ + V D+ FR +I F Y AG TP PC+DCN+ +KF LL Sbjct: 64 EDAAEVAFALDMPYQVLDFTADFRAQIIEKFIRVYEAGGTPNPCIDCNKYMKFRHLLDWA 123 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + G + + TGHY R D R ++ + +D +DQSY L+ TQ+QL +R PLG Sbjct: 124 EEHGMEYVVTGHYARVEQ---DAATGRWLLKKGLDEGKDQSYVLYNLTQEQLAHIRLPLG 180 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 + K VR +A+E A K DSQDICFV G Y +++ GD + +G+++ Sbjct: 181 ALHKTEVRKIAQEHSFINAQKHDSQDICFVPDGDYARFMEQFTGKHYPAGDFLDRSGKVV 240 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G H+G + YT+GQR+GLG+A+G P++V D ++ V VGP L +Y ++NW+ Sbjct: 241 GTHSGAVRYTLGQRKGLGLALGAPVYVCGKDMQANTVTVGPESELFDRIVYAEDVNWIAI 300 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 A+ + + R Q V ++G ++F++ + GQA V Y D Sbjct: 301 ----PALTGPLRVTARTRYHQAEQQATVYPAENGFRLEFDQPQRAPTPGQAAVLYQGDV- 355 Query: 374 EARVLGGGIIS 384 VLGGG I+ Sbjct: 356 ---VLGGGTIT 363 >gi|119512160|ref|ZP_01631251.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nodularia spumigena CCY9414] gi|119463191|gb|EAW44137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nodularia spumigena CCY9414] Length = 351 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 142/364 (39%), Positives = 210/364 (57%), Gaps = 21/364 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSS AA+L GY+VIG+TL L K KG CC+ + + DA +C+ Sbjct: 3 KVVVGLSGGVDSSTAAAILHHQGYEVIGLTLWLM------KGKGQCCS-EGMIDAADICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + V H V D E F+ ++ + Y+AG TPLPC CN+TVKF ++ R+ L D Sbjct: 56 QLGVPHEVVDIREVFQTQIVDFLVTGYSAGITPLPCSQCNKTVKFGPMVQYAREKLDCDR 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + D+ R + R +D +DQSYFL+ +Q+ L FPLG + K Sbjct: 116 IATGHYAQINY---DEATGRYQLLRAVDRNKDQSYFLYDLSQELLKATVFPLGKLDKADT 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R +A E GL A+K +SQD+C V+ G + + A GDIV + G++LG+H+G+ Sbjct: 173 RRIAAEYGLTTANKPESQDLCLVESNGSMRAFLDKYLA--PKPGDIVDVAGKVLGQHDGV 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQR+GLG+A EPL+V+ LD +++V+VG R + ++NW+ + E + Sbjct: 231 HHYTIGQRKGLGIAAAEPLYVIELDAVNNKVVVGDRTKGTQPECTVNQVNWV--SMAEPS 288 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + ++ RSS PV V N V + F++ + + GQA V+Y D +VLG Sbjct: 289 TPIRAEVQIRYRSSPTPVTVIPLENSR-VRLVFDEPQFSITPGQAAVWYDGD----KVLG 343 Query: 380 GGII 383 GGII Sbjct: 344 GGII 347 >gi|257470341|ref|ZP_05634432.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|317064551|ref|ZP_07929036.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|313690227|gb|EFS27062.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium ulcerans ATCC 49185] Length = 359 Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 142/378 (37%), Positives = 215/378 (56%), Gaps = 37/378 (9%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L D+N K + VAMSGGVDSS VA LLK+ GY+V GVT++ C + Sbjct: 12 LQYDENNKSTTIAVAMSGGVDSSTVAYLLKKQGYNVFGVTMK-------------TCKPE 58 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D DA++VCD + + +Y+ D + F+ V+ F Y G+TP PC+ CN+ +K L+ Sbjct: 59 DS-DAKKVCDDLGIPYYLLDVTKEFKEKVMDYFVDEYLKGKTPNPCMVCNKYIKLGLLID 117 Query: 132 VTRQLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 R GAD +ATGHY + + L +GDD + DQ YFL + L L Sbjct: 118 FARSKGADFMATGHYTQMKDGVLSMGDDAGK------------DQVYFLSQMKKDNLKYL 165 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVH 247 +FP+G+++K VR+LA+ +G+ + K DSQ+ICFV+ GK + + ++ G A + G+I+ Sbjct: 166 KFPIGNLEKPKVRELAQLLGVRVYAKKDSQEICFVEDGKLKEFLMEMSNGKAGKPGNIID 225 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 +NG++LG+H G+ YTIGQR+GLG+A+ PL+V+ LD + VIVGP E L + + Sbjct: 226 VNGKVLGKHKGLSFYTIGQRKGLGIALESPLYVIELDSKRNCVIVGPNEMLFKNSLIAES 285 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEV-GVASGQAC 365 +N + ED ++G +C+ K RS ++ G + V+F +++V V GQ Sbjct: 286 VNLISVDNIED--LNGIECWAKTRSRDQLHKCKLEVLSSGNIKVNFIENQVRAVTPGQGV 343 Query: 366 VFYTSDSNEARVLGGGII 383 VFY D +VLG G I Sbjct: 344 VFYDEDH---KVLGSGFI 358 >gi|126656453|ref|ZP_01727714.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cyanothece sp. CCY0110] gi|126622139|gb|EAZ92846.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cyanothece sp. CCY0110] Length = 349 Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 148/367 (40%), Positives = 204/367 (55%), Gaps = 27/367 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV AA L+ GY VIG+TL L K KG CC+ + + DA +C+ Sbjct: 3 KVVVGLSGGVDSSVAAASLQHQGYTVIGLTLWLM------KGKGQCCS-EGMVDAAFICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + V H++ D E F +I S Y +G TPLPC CNR VKF +L+ R+ L D Sbjct: 56 QLGVPHHIVDTRELFEANIINYLVSGYESGVTPLPCSQCNRAVKFGPMLAYAREELNCDR 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R D+ R + R +D +DQSYFL+ +Q L FPLG+ KE Sbjct: 116 IATGHYARIRY---DEQMDRYQLLRAIDRNKDQSYFLYDLSQDILKGTIFPLGEQTKEET 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQ----QGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 R +A E L A K +SQD+C ++ + D + EG+IV L+G++LG H Sbjct: 173 RRIAAEFDLKTASKPESQDLCLIEAHGSMASFLDQYIKPK-----EGEIVDLDGKVLGTH 227 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GI +YTIGQR+GLG+A EPL+VV LD +RVIVG R + + +NW+ Sbjct: 228 QGIHHYTIGQRKGLGIAAPEPLYVVKLDAVMNRVIVGNRAAGGRSDCTVGRLNWVSIAEP 287 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + V+ RS V + N+ V + F++++ G+ GQA VFY N Sbjct: 288 SSPITAAVQ--VRYRSKAVAVTIIPIENNR-VKLQFDEAQFGITPGQAAVFY----NGEI 340 Query: 377 VLGGGII 383 VLGGGII Sbjct: 341 VLGGGII 347 >gi|314966673|gb|EFT10772.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL082PA2] gi|314981402|gb|EFT25496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL110PA3] gi|315092068|gb|EFT64044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL110PA4] gi|315103674|gb|EFT75650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL050PA2] gi|327327498|gb|EGE69274.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL103PA1] Length = 396 Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 151/381 (39%), Positives = 214/381 (56%), Gaps = 25/381 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 ++V+ AMSGGVDS+V AA L G+DV GV L L + + S R+GS CC+ +D +DARR Sbjct: 31 VKVLAAMSGGVDSAVAAARLVEAGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFDARR 89 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG Sbjct: 90 AADRLGIPFYVWDFSDRFVVEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGY 149 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R+++ DG + + R +D +DQSY L Q QL FPLG+ K Sbjct: 150 DAVATGHYARTKVI---DGVTK--LYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKV 204 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHN 257 +VR A +GL +ADK DS DICF+ G D ++ I + +G+I +G ++G HN Sbjct: 205 NVRQEAAALGLSVADKPDSNDICFIPDG---DTPGWLSDKIGSADGEIRDESGALVGHHN 261 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G ++TIGQRRGL + + G+P +V+ ++ ++ V+VG E L VH I W Sbjct: 262 GYHHFTIGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWC-- 319 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 V+ + ++R+ DPVP + GV V+ E S GVA GQA VFY D Sbjct: 320 ---SGEPVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAVVFYDGD-- 374 Query: 374 EARVLGGGIISGSKRSDAVEE 394 V+G I G+ R+ E Sbjct: 375 --LVVGSATICGTDRAGVKAE 393 >gi|187778511|ref|ZP_02994984.1| hypothetical protein CLOSPO_02106 [Clostridium sporogenes ATCC 15579] gi|187772136|gb|EDU35938.1| hypothetical protein CLOSPO_02106 [Clostridium sporogenes ATCC 15579] Length = 353 Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 128/364 (35%), Positives = 206/364 (56%), Gaps = 19/364 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V +AMSGGVDSSV A +LK GYDVIG+ + L+ + C DARRV + Sbjct: 6 VALAMSGGVDSSVSAYILKERGYDVIGIYMDLWRDEREE-----YCNKSASEDARRVAEK 60 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 +N+ +V + E++F++ VI F Y +G TP PCV CN+T+KF + ++ GAD +A Sbjct: 61 LNIPFHVINIEKKFKDNVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEFGADFMA 120 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ R+++ + D ++DQ+Y ++ Q QL P G+ KK+ +R+ Sbjct: 121 TGHYCKI-----EERNERKVIVKAEDDKKDQTYMMYNLKQYQLDRTIMPCGEYKKDHIRE 175 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A +GLD+ +K DSQ+ICF+ + +KR EG+ V G I+G+H GII Y Sbjct: 176 IAESIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKRKISEGNFVDKEGNIIGKHKGIIYY 235 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A+G+P +V+ ++ ++ V++G E + + +++N++ E + Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGEEEDIFRTELIAKDVNFIPFDKLEKPM-- 293 Query: 323 GFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + K+R S P + ++ V V FE + + GQ+ VFY D + GGG Sbjct: 294 --ELEAKVRYSAKPSKATIIPLENNKVKVVFENKQRAITKGQSVVFYDKDV----LAGGG 347 Query: 382 IISG 385 II G Sbjct: 348 IIEG 351 >gi|256027773|ref|ZP_05441607.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Fusobacterium sp. D11] gi|289765727|ref|ZP_06525105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. D11] gi|289717282|gb|EFD81294.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. D11] Length = 362 Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 141/387 (36%), Positives = 211/387 (54%), Gaps = 38/387 (9%) Query: 2 VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61 V SE ++ ++ D + ++++V VAMSGGVDSS VA LLK+ GYD+ GVT++ + + Sbjct: 7 VASEFSKY--IEFDSSKRNIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS- 63 Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 DA++VCD + + HYV D + F+ V+ F S Y G TP PC+ CN Sbjct: 64 -------------DAKKVCDDLGIEHYVLDVRDEFKKKVVDYFVSEYMNGRTPNPCMVCN 110 Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLF 178 R +KF +L GA +ATGHY + + L VGDD +DQ YFL Sbjct: 111 RHIKFGKMLDFILSKGASFMATGHYTKLKNGLLSVGDDS------------NKDQVYFLS 158 Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG 238 + +L + FP+GD++K +R+LA ++G+ + K DSQ+ICFV GK + + G Sbjct: 159 QIQKDRLNKIIFPVGDLEKSKLRELAEQLGVRVYSKKDSQEICFVDDGKLKEFLIENTKG 218 Query: 239 IALE-GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES 297 A + G+IV +G ILGRH G YTIGQR+GLG++ EPL+V+ D+ ++ +IVG E Sbjct: 219 KAEKTGNIVDKDGNILGRHKGFSFYTIGQRKGLGISSEEPLYVLAFDRETNNIIVGKNED 278 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV 357 L + +N E +D +CF K RS ++++ D V F ++V Sbjct: 279 LFKDELIATRLNLFLVSSLEG--LDNLECFAKTRSRDILHKCLLKKDGDNFQVKFIDNKV 336 Query: 358 -GVASGQACVFYTSDSNEARVLGGGII 383 + GQ VFY ++E V+ GG I Sbjct: 337 RAITPGQGIVFY---NDEGNVIAGGFI 360 >gi|160946390|ref|ZP_02093599.1| hypothetical protein PEPMIC_00350 [Parvimonas micra ATCC 33270] gi|158447506|gb|EDP24501.1| hypothetical protein PEPMIC_00350 [Parvimonas micra ATCC 33270] Length = 350 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 132/357 (36%), Positives = 200/357 (56%), Gaps = 11/357 (3%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDS V LL ++GY+VIGVT+ L + CC+ V DA+ V + + V Sbjct: 1 MSGGVDSCVACHLLLKEGYEVIGVTMNLVPKGHLYDEEKGCCSLSSVMDAKIVAEAMGVK 60 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 HY + E F VI F Y+ G TP PCV CN+ +KF+ + R L AD ++TGHY Sbjct: 61 HYTMSFREEFDRKVIENFVREYSLGYTPNPCVACNKYIKFNSFVDKIRPLKADFISTGHY 120 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 + D R ++ R D ++DQ+YFL+ T+Q+ L FPL D++KE VR +A++ Sbjct: 121 AKVEF---DKNYNRYLLKRAKDSKKDQTYFLYNTSQEVLSKTLFPLADLEKEKVRQIAKD 177 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 + K DS++ICFVQ + +K+ N + EG V NG LG+H GI+ YT+GQ Sbjct: 178 ENILTYSKKDSEEICFVQNRDHGLFIKQRNPELIKEGYFVDENGNKLGKHKGIVYYTVGQ 237 Query: 267 RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKC 326 R+GLG+A+G+ +FV ++ + V + ++L ++I +RE N++ DA+ + Sbjct: 238 RKGLGIALGKRVFVSKINAIDNTVTLSDEDALYKNKIRIREENFIP----FDALEKPLEV 293 Query: 327 FVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 VK+R Q + ++ ++V+FEK GQ+ VFY D V+GGGII Sbjct: 294 SVKVRHGQSETKGLLFYKNNDLFVEFEKQVRAPNKGQSAVFYLDDI----VVGGGII 346 >gi|317133301|ref|YP_004092615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ethanoligenens harbinense YUAN-3] gi|315471280|gb|ADU27884.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ethanoligenens harbinense YUAN-3] Length = 363 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 142/362 (39%), Positives = 203/362 (56%), Gaps = 15/362 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V+ AMSGGVDSSV AALLK G VIG+TL ++ + + SCC+ DV DAR VC+ Sbjct: 12 VLAAMSGGVDSSVTAALLKEQGASVIGITLNVWPEEENPCAR-SCCSVTDVDDARAVCNV 70 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + HYV + + F+ VI FA+ Y G TP PC+ CN VKF+ +L + AD +A Sbjct: 71 LGIPHYVLNTQADFKRGVIDYFAAEYLRGRTPNPCIACNARVKFTAMLRKADEFQADFIA 130 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R + D G R + R D +DQ+Y L+ TQ QL + FP G +K +R Sbjct: 131 TGHYAR---ILRDAGGCR--LVRAADARKDQTYVLYMLTQTQLGRILFPCGGYEKPQIRA 185 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA+ GL K+DSQD+CF+ +G Y ++ AG+ G+IV +GQ+LGRH+G+ + Sbjct: 186 LAKAFGLPTFQKTDSQDLCFIGRGGYTGFLRENCAGLLRPGNIVDESGQVLGRHDGVYRF 245 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQ +GLG + L+V+ +D + V VG +L + + + G E D Sbjct: 246 TIGQHKGLGAFSEKKLYVLSIDAARAEVRVGENAALFAAGALVGGTHRILPGALE----D 301 Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 G + KIR + VP + ++G + F++ + V GQA VFY D+ VLGGG Sbjct: 302 GARVQAKIRYNAPAVPATLHTVENGALRLLFDEPQRAVTPGQAAVFYDGDT----VLGGG 357 Query: 382 II 383 I Sbjct: 358 TI 359 >gi|260892132|ref|YP_003238229.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ammonifex degensii KC4] gi|260864273|gb|ACX51379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ammonifex degensii KC4] Length = 344 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 141/363 (38%), Positives = 196/363 (53%), Gaps = 27/363 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV VA+SGGVDS+ A LL + GY+V GVT+ G++ A V Sbjct: 3 RVAVALSGGVDSATAAFLLLQAGYEVFGVTM--------------LVTGEEGEKAAEVAA 48 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H+VFD + F VI PF +Y AG TP PCV CNR +KF LL +LGAD L Sbjct: 49 KLKIPHFVFDLRQEFAQEVIKPFVEAYLAGLTPNPCVWCNRKLKFGLLLEKALKLGADFL 108 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R D + R ++ R D +DQSYFL++ QQQL + FPLG K Sbjct: 109 ATGHYARVWF---DPARERYLLARGKDRRKDQSYFLYSLNQQQLARVLFPLGGRTKAENL 165 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 L +++GL + + +SQD+CF++ G Y +++K + G I+ G+ +G H G+ Sbjct: 166 LLVKKLGLPL--REESQDVCFLKGGDYRELIKAMAQEKVKPGPILDPQGKKIGTHRGLAF 223 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQRRGLG A G+P +V+ LD + +IVGP E L + IN++ LFE Sbjct: 224 YTIGQRRGLGHAWGKPYYVLALDPRRNALIVGPEEMLYRPSCRVEGINFI---LFERP-P 279 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 F V++R + VP + + V V+F + V GQA VFY D V+GGG Sbjct: 280 GPFTAAVQVRYTSPAVPATLFPEGEAVRVEFASPQRAVTPGQAAVFYQEDL----VVGGG 335 Query: 382 IIS 384 I+ Sbjct: 336 TIA 338 >gi|86608667|ref|YP_477429.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. JA-2-3B'a(2-13)] gi|123502696|sp|Q2JM78|MNMA_SYNJB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|86557209|gb|ABD02166.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 368 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 137/350 (39%), Positives = 199/350 (56%), Gaps = 19/350 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+V A+SGGVDSS VAALL+ GY V GVTL L + KG CC + + DA VC+ Sbjct: 19 RIVAALSGGVDSSTVAALLQEQGYAVEGVTLWLM------RGKGQCCT-EGLVDAAAVCE 71 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + H+V D E F+ ++ + YA G TPLPC CN+ VKF LL+ R+ LG Sbjct: 72 QLGIPHHVVDSRELFQANIVDYLVAGYAEGITPLPCSQCNKLVKFGPLLAYAREKLGISQ 131 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R + + G+ + + R +D ++DQSYFL+ +Q+ L FPLG+ K Sbjct: 132 MATGHYARVR-FNAELGRYQ--LLRAVDRQKDQSYFLYDLSQEHLAHSLFPLGEYTKAQT 188 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNGI 259 R LA GL ADK +SQD+C ++ Y + ++ + G+IV G++LG H GI Sbjct: 189 RQLAARYGLVTADKPESQDLCLIE--TYGSMRSFLDQYLGQRPGEIVDTQGRVLGSHEGI 246 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YT+GQR+GLG+A PL+VV +D +RV+VG RE ++ ++NW+ A Sbjct: 247 HHYTVGQRKGLGIASSRPLYVVRIDAAMNRVVVGEREEATQAEAWVSQVNWVSI----PA 302 Query: 320 VVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFY 368 V++R PVP V + + V + F + + GV GQA V+Y Sbjct: 303 PTGSLAVEVQVRYRTPPVPAMVIPESPERVKLQFAEPQFGVTPGQAAVWY 352 >gi|54026238|ref|YP_120480.1| tRNA-specific 2-thiouridylase MnmA [Nocardia farcinica IFM 10152] gi|81602523|sp|Q5YRS5|MNMA_NOCFA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|54017746|dbj|BAD59116.1| putative tRNA methyl transferase [Nocardia farcinica IFM 10152] Length = 372 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 151/380 (39%), Positives = 209/380 (55%), Gaps = 24/380 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV+GV L L ++ + R GS CC+ +D DARR Sbjct: 2 MRVLAAMSGGVDSAVAAARAVDAGHDVVGVHLAL-SATPGTLRTGSRGCCSKEDAGDARR 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ +RF+ VI F ++YAAGETP PC+ CN +KFS L LG Sbjct: 61 AADVLGIPFYVWDFADRFKEDVIDDFVAAYAAGETPNPCLRCNEKIKFSALADRAVALGF 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGHY R DG ++ R +D ++DQSY L T +QL FP+GD K Sbjct: 121 DAVVTGHYARL-----SDG----VLRRAVDADKDQSYVLAVLTAEQLARAMFPVGDTPKP 171 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257 +R A E GL +A+K DS DICF+ G D + A I + G +V +GQ+L H Sbjct: 172 QIRAEAAERGLAVANKPDSHDICFIPSG---DTRAFLGARIGIRPGAVVDADGQVLAEHE 228 Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+ +TIGQR+GLG+ A G+P +V +D S V VG E L+V ++ W Sbjct: 229 GVHGFTIGQRKGLGLPGPAADGKPRYVTDIDPASGTVRVGSAEDLQVRQVRAERAVWT-S 287 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 G + +D C ++R+ P + D G+ V + GVA GQA V Y D Sbjct: 288 GRTPEGPID---CVAQVRAHGGTAPATAEAVDGGLVVRLHEPLTGVAKGQAVVLYRPDPL 344 Query: 374 EARVLGGGIISGSKRSDAVE 393 VLG G ISG+ R+ A++ Sbjct: 345 GDEVLGSGTISGTARTHALD 364 >gi|227832922|ref|YP_002834629.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Corynebacterium aurimucosum ATCC 700975] gi|262182589|ref|ZP_06042010.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium aurimucosum ATCC 700975] gi|254811450|sp|C3PFT7|MNMA_CORA7 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|227453938|gb|ACP32691.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Corynebacterium aurimucosum ATCC 700975] Length = 361 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 152/377 (40%), Positives = 201/377 (53%), Gaps = 26/377 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRV 79 MRV+VAMSGGVDSSV AA G+DVIGV L L+ + ++ K CC+ +D DARR+ Sbjct: 1 MRVLVAMSGGVDSSVAAARAVEAGHDVIGVHLALHKDAQQTREKARGCCSLEDSADARRI 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + + YV+D+ E F+ AVI F SYA GETP PC+ CN +KF+ LL LG D Sbjct: 61 CDKLGIPFYVWDFSEEFKEAVIGDFVDSYARGETPNPCLRCNEKIKFAALLRKGMALGFD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + DG R R +D +DQSY L T+++L FP+GD K Sbjct: 121 AVATGHYAT----IDSDGYMR----RSLDENKDQSYVLGVITKEELDHCFFPIGDTPKPQ 172 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNG 258 +R+ A+ G A K DS DICF+ G + R I L G IV G L H+G Sbjct: 173 IREEAKRHGFSTAAKPDSYDICFIPDGNTQAFLGR---SIGLRPGMIVDTEGNELKEHDG 229 Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 NYTIGQR+GL + A G P +V +D + V VG R L V I + +L Sbjct: 230 AWNYTIGQRKGLDIKTPTADGSPRYVTDIDAATGTVTVGSRADLAVTHIEADRLKYLHPA 289 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + D F C V++R+ VP V R D + ++ + GVA GQA V Y Sbjct: 290 MEGD-----FDCEVQVRAHGSVVPCHAHVDREADRMTLELNEPLSGVARGQAAVLYLPSP 344 Query: 373 NEAR--VLGGGIISGSK 387 +E VLG G I G++ Sbjct: 345 DELGDIVLGSGTICGTE 361 >gi|45658118|ref|YP_002204.1| tRNA-specific 2-thiouridylase MnmA [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45601360|gb|AAS70841.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 366 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 141/376 (37%), Positives = 214/376 (56%), Gaps = 13/376 (3%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDARRVCDTIN 84 MSGGVDS+V A LL DGY+VIGV L+ Y + K SCC+ +D+ DAR V ++ Sbjct: 1 MSGGVDSAVTAGLLMEDGYEVIGVNLRTWEYEAPACDTTKKSCCSPEDIRDARDVGISLK 60 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV E+ F+ VI F Y G+TP PCV+CN VKF L + LG D +ATG Sbjct: 61 IPFYVIKMEKVFQEKVIDRFIEDYQHGKTPNPCVECNTFVKFGALFEKAKALGIDKIATG 120 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY R + +G+R I +D+ ++Q+Y+L+ +Q+ L ++ FPLG+M K VR +A Sbjct: 121 HYAR----IARNGERYAI-ANGIDVGKNQAYYLYGLSQENLKNVIFPLGEMTKPEVRQIA 175 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI 264 R MGL +ADKS+SQ+ICF+ + Y +++ N G +G+I+G+H G N+TI Sbjct: 176 RRMGLPVADKSESQEICFIPENDYRKFLEKKNVEFT-PGFFKLKDGRIVGKHKGRENFTI 234 Query: 265 GQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGF 324 GQR+GLG+A PL+V+ ++ + S VI+G + ++N+ G + + Sbjct: 235 GQRKGLGIAWKNPLYVISIEDDGS-VILGEENETYNESFSVIDLNFQGLAPLNEG--ESL 291 Query: 325 KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 +C V++R P+ + + +G+ V + GV GQ+ VFY DS+ +L GGIIS Sbjct: 292 ECRVQVRYRHIPIRCKITKMKEGLIVHPLEDVRGVTPGQSAVFYPLDSD--YLLLGGIIS 349 Query: 385 GSKRSDAVEESLLSVI 400 V E +SV+ Sbjct: 350 KGSIQMRVAEPAISVL 365 >gi|313896558|ref|ZP_07830107.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Selenomonas sp. oral taxon 137 str. F0430] gi|312974743|gb|EFR40209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Selenomonas sp. oral taxon 137 str. F0430] Length = 365 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 148/365 (40%), Positives = 207/365 (56%), Gaps = 16/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDARRV 79 RVVVAMSGGVDSS+ AALL GYDV+GVT++L N + + SCC+ V DARRV Sbjct: 9 RVVVAMSGGVDSSLAAALLLAQGYDVVGVTMRLSNENRDVDPENDRSCCSLSSVDDARRV 68 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + HYV D+ F+ +VI F Y G TP PC+ CNR +KF LL + +LGA Sbjct: 69 ADVLGIRHYVMDFTMPFQTSVIDYFLDEYLLGRTPNPCIACNRYIKFEGLLHKSAELGAS 128 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + DG R+ + D+++DQSY L+ Q+ L + PLGD K + Sbjct: 129 HVATGHYAR----IDFDGGMYRLR-KGKDVDKDQSYVLYHLNQETLAHVLLPLGDFDKGT 183 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R +A E L +A K +SQ+ICFV + Y +K G ++ GDIV G +LG H+GI Sbjct: 184 TRRMAEEYRLPVAHKPESQEICFVPRDDYKSYMKEKRPGRSVPGDIVDRAGNVLGHHDGI 243 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW-LGDGLFED 318 YTIGQRRGLG+A +PL+V LD + V+VG E + + +++W + + L E Sbjct: 244 SFYTIGQRRGLGIAAPQPLYVTALDAVHNHVVVGTAEEVFARELTASDLSWTMWESLDEV 303 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + K + +P+ R + V F + + V GQ+ VFY D VL Sbjct: 304 CMAHAKIRYGKREAEARIMPLDGNR----LRVRFTEPQRAVTPGQSIVFYEGDV----VL 355 Query: 379 GGGII 383 GGG+I Sbjct: 356 GGGVI 360 >gi|294793679|ref|ZP_06758816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Veillonella sp. 3_1_44] gi|294455249|gb|EFG23621.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Veillonella sp. 3_1_44] Length = 363 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 136/362 (37%), Positives = 202/362 (55%), Gaps = 18/362 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + VAMSGGVDSS+ AA+L + GY V G+TL L+ S V DA+++CD Sbjct: 15 IAVAMSGGVDSSLTAAMLLKQGYKVFGITLWLWVSGTPYDE-----VPLAVTDAKKMCDF 69 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + H+V D + F V+ F YA G TP PCV CN+ +KF +L+ +LGA + Sbjct: 70 LGIEHHVIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATHMV 129 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ + + +D +DQSY ++ Q+ L L FPLG K R Sbjct: 130 TGHYAQVNY---NEKTGLYELHKGVDPTKDQSYVMYNMNQRILSHLMFPLGGQCKTETRK 186 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA E L +A K DS DICF+ G Y +V G G+IV +G++LG+HNG+ NY Sbjct: 187 LAAEYDLPVAKKPDSVDICFLPHGNYQKLVVEEMKGKPESGNIVTEDGEVLGKHNGLFNY 246 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A PL+V+ + + + VIVGP E L +R+ + N+L D + ++ + Sbjct: 247 TIGQRKGLGIAYKHPLYVIGFNGDRNEVIVGPNEHLFTNRMICKFYNFLDDTIHKELKAE 306 Query: 323 GFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 G KIR + +P P + +DD + V FE+ + + GQ+ FY N ++LGG Sbjct: 307 G-----KIRYAANPSPCTARILDDDTMEVIFEEPQRAITPGQSVAFY----NGTQLLGGA 357 Query: 382 II 383 +I Sbjct: 358 VI 359 >gi|269797937|ref|YP_003311837.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Veillonella parvula DSM 2008] gi|282850166|ref|ZP_06259545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Veillonella parvula ATCC 17745] gi|269094566|gb|ACZ24557.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Veillonella parvula DSM 2008] gi|282579659|gb|EFB85063.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Veillonella parvula ATCC 17745] Length = 353 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 138/362 (38%), Positives = 203/362 (56%), Gaps = 18/362 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + VAMSGGVDSS+ AA+L + GY V G+TL L+ S V DA+++CD Sbjct: 5 IAVAMSGGVDSSLTAAMLLKQGYKVFGITLWLWVSGTPYDE-----VPLAVTDAKKMCDF 59 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + H+V D + F V+ F YA G TP PCV CN+ +KF +L+ +LGA + Sbjct: 60 LGIEHHVIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATHMV 119 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + Y + G + + +D +DQSY ++ Q+ L L FPLG K R Sbjct: 120 TGHYAQVN-YNEETGLYE--LHKGVDPTKDQSYVMYNMNQRILSHLMFPLGGQCKTETRK 176 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA E L +A K DS DICF+ G Y +V G G+IV +G++LG+HNG+ NY Sbjct: 177 LAAEYDLPVAKKPDSVDICFLPHGNYQKLVVEEMKGKPESGNIVTEDGEVLGKHNGLFNY 236 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A PL+V+ + + + VIVGP E L +R+ + N+L D + ++ + Sbjct: 237 TIGQRKGLGIAYKHPLYVIGFNGDRNEVIVGPNERLFTNRMICKFYNFLDDTIHKELKAE 296 Query: 323 GFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 G KIR + +P P + +DD + V FE+ + + GQ+ FY N ++LGG Sbjct: 297 G-----KIRYAANPSPCTARILDDDTMEVIFEEPQRAITPGQSVAFY----NGTQLLGGA 347 Query: 382 II 383 +I Sbjct: 348 VI 349 >gi|294791818|ref|ZP_06756966.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Veillonella sp. 6_1_27] gi|294457048|gb|EFG25410.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Veillonella sp. 6_1_27] Length = 363 Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 136/362 (37%), Positives = 202/362 (55%), Gaps = 18/362 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + VAMSGGVDSS+ AA+L + GY V G+TL L+ S V DA+++CD Sbjct: 15 IAVAMSGGVDSSLTAAMLLKQGYKVFGITLWLWVSGTPYDE-----VPLAVTDAKKMCDF 69 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + H+V D + F V+ F YA G TP PCV CN+ +KF +L+ +LGA + Sbjct: 70 LGIEHHVIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATHMV 129 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ + + +D +DQSY ++ Q+ L L FPLG K R Sbjct: 130 TGHYAQVNY---NEKTGLYELHKGVDPTKDQSYVMYNMNQRILSHLMFPLGGQCKTETRK 186 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA E L +A K DS DICF+ G Y +V G G+IV +G++LG+HNG+ NY Sbjct: 187 LAAEYDLPVAKKPDSVDICFLPHGNYQKLVVEEMKGKPESGNIVTEDGEVLGKHNGLFNY 246 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A PL+V+ + + + VIVGP E L +R+ + N+L D + ++ + Sbjct: 247 TIGQRKGLGIAYKHPLYVIGFNGDRNEVIVGPNEHLFTNRMICKFYNFLDDTIHKELKAE 306 Query: 323 GFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 G KIR + +P P + +DD + V FE+ + + GQ+ FY N ++LGG Sbjct: 307 G-----KIRYAANPSPCTARILDDDTMEVIFEEPQRAITPGQSVAFY----NGTQLLGGA 357 Query: 382 II 383 +I Sbjct: 358 VI 359 >gi|320529055|ref|ZP_08030147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Selenomonas artemidis F0399] gi|320138685|gb|EFW30575.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Selenomonas artemidis F0399] Length = 361 Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 148/365 (40%), Positives = 207/365 (56%), Gaps = 16/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDARRV 79 RVVVAMSGGVDSS+ AALL GYDV+GVT++L N + + SCC+ V DARRV Sbjct: 5 RVVVAMSGGVDSSLAAALLLAQGYDVVGVTMRLSNENRDVDPENDRSCCSLSSVDDARRV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + HYV D+ F+ +VI F Y G TP PC+ CNR +KF LL + +LGA Sbjct: 65 ADVLGIRHYVMDFTMPFQTSVIDYFLDEYLLGRTPNPCIACNRYIKFEGLLHKSAELGAS 124 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + DG R+ + D+++DQSY L+ Q+ L + PLGD K + Sbjct: 125 HVATGHYAR----IDFDGGMYRLR-KGKDVDKDQSYVLYHLNQETLAHVLLPLGDFDKGT 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R +A E L +A K +SQ+ICFV + Y +K G ++ GDIV G +LG H+GI Sbjct: 180 TRRMAEEYRLPVAHKPESQEICFVPRDDYKSYMKEKRPGRSVPGDIVDRAGNVLGHHDGI 239 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW-LGDGLFED 318 YTIGQRRGLG+A +PL+V LD + V+VG E + + +++W + + L E Sbjct: 240 SFYTIGQRRGLGIAAPQPLYVTALDAVHNHVVVGTAEEVFARELTASDLSWTMWESLDEV 299 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + K + +P+ R + V F + + V GQ+ VFY D VL Sbjct: 300 RMAHAKIRYGKREAEARIMPLDGNR----LRVRFTEPQRAVTPGQSIVFYEGDV----VL 351 Query: 379 GGGII 383 GGG+I Sbjct: 352 GGGVI 356 >gi|237738505|ref|ZP_04568986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium mortiferum ATCC 9817] gi|229420385|gb|EEO35432.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium mortiferum ATCC 9817] Length = 357 Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 141/375 (37%), Positives = 215/375 (57%), Gaps = 37/375 (9%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 D+ K++++ VAMSGGVDSS VA +LK+ GYD+IG+T++ C +D Sbjct: 13 DEKNKNIKIAVAMSGGVDSSTVAYILKKQGYDLIGITMR-------------TCNPED-E 58 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA++VC+ + + HYV D + F+ V+ F Y G+TP PC+ CN+ +KF L+ R Sbjct: 59 DAKKVCEDLGIPHYVLDATKEFKTKVMDYFIEEYLQGKTPNPCMVCNKHIKFGMLIDFAR 118 Query: 135 QLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GAD +ATGHY + + L +GDD +DQ YFL ++ L L FP Sbjct: 119 SKGADFMATGHYTQLKDGVLSMGDDP------------NKDQVYFLSQINKENLKYLMFP 166 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNG 250 +GD++K VR+LA ++G+ + K DSQ+ICFV+ GK + + G A +G+IV +G Sbjct: 167 IGDLEKPKVRELAEQLGVRVYAKKDSQEICFVEDGKLKEFLLENTKGRAGKKGNIVTTDG 226 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 ++LG+HNG+ YTIGQR+GLG++ +PL+V+ LD ++ VIVG E L + +N Sbjct: 227 KVLGKHNGLAFYTIGQRKGLGISQEKPLYVIELDSKNNNVIVGDNEQLFKGELIAENVNL 286 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEV-GVASGQACVFY 368 + E+ ++G C+ K RS ++ ++G V V F + +V V GQ VFY Sbjct: 287 ISFDRLEE--LNGVVCWAKTRSRDKLHKCQLEVLENGNVKVRFIEDKVRAVTPGQGVVFY 344 Query: 369 TSDSNEARVLGGGII 383 + E +VLG G I Sbjct: 345 ---NEEKKVLGSGFI 356 >gi|254303789|ref|ZP_04971147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323981|gb|EDK89231.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 362 Score = 240 bits (612), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 138/377 (36%), Positives = 203/377 (53%), Gaps = 36/377 (9%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L+ D N ++R+ VAMSGGVDSS VA LLK+ GYD+ GVT++ + + Sbjct: 15 LEFDSNNSNIRIGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 DA++VCD + + HYV D + F+ V+ F Y G TP PC+ CNR +KF +L Sbjct: 64 ---DAKKVCDDLGIEHYVLDVRDEFKEKVMDYFVDEYMNGRTPNPCMVCNRHIKFGKMLD 120 Query: 132 VTRQLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 GA+ +ATGHY + + L VGDD +DQ YFL + +L + Sbjct: 121 FILSKGANFMATGHYTKLKNGLLSVGDDS------------NKDQVYFLSQIEKDRLSKI 168 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVH 247 FP+GD++K +R+ A++MG+ + K DSQ+ICFV GK + G A + G+IV Sbjct: 169 IFPVGDLEKPKLREFAQQMGVRVYSKKDSQEICFVDDGKLKQFLIENTKGKAEKPGNIVD 228 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 NG ILG+H G YTIGQR+GLG++ EPL+V+ D+ ++ +IVG + L + Sbjct: 229 KNGNILGKHRGFSFYTIGQRKGLGISSEEPLYVLAFDRETNNIIVGENKDLFKDELTATR 288 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACV 366 +N + +D +CF K RS ++++ D V F ++V V GQ V Sbjct: 289 LNLFSVSSLDS--LDNLECFAKTRSRDILHKCLLKKDGDNFQVKFIDNKVRAVTPGQGIV 346 Query: 367 FYTSDSNEARVLGGGII 383 FY + N V+ GG I Sbjct: 347 FYNIEGN---VIAGGFI 360 >gi|195952741|ref|YP_002121031.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Hydrogenobaculum sp. Y04AAS1] gi|226704772|sp|B4U7E2|MNMA_HYDS0 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|195932353|gb|ACG57053.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Hydrogenobaculum sp. Y04AAS1] Length = 342 Score = 239 bits (611), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 149/368 (40%), Positives = 210/368 (57%), Gaps = 30/368 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + V MSGGVDSSV A LLK G+DVIGVTL+ Y + + CC+ +DV DAR VC Sbjct: 1 MIIAVGMSGGVDSSVAAYLLKEQGHDVIGVTLRFY-KEECKENARVCCSPKDVQDARIVC 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-AD 139 D + + H D+E F+ VI F SY G TP PC CN+ VK + L +Q D Sbjct: 60 DMLGIPHITLDWENLFKERVIDYFIKSYKTGLTPNPCAICNKDVKTAFLGFYLKQTADID 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 LATGHY+ + ++GK +R E+DQSYF+ +Q L L FP+G M K+ Sbjct: 120 FLATGHYV-----IKEEGKIKRAK------EKDQSYFMALVPKQSLDYLMFPVGYMTKQE 168 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQ-ILGRHN 257 +RD+A+++ L +A+K +SQD+CF+ K D+ ++ I + +GDIVH+ Q LG+H Sbjct: 169 IRDIAKKINLPVANKIESQDVCFL---KGMDLEDYLSQFIDMTQGDIVHIATQKTLGKHK 225 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI YTIGQR GLGV+ +PL+VV D + + VG +E L I L++ N L D FE Sbjct: 226 GIHRYTIGQRHGLGVSYHKPLYVVEKDIEKNILYVGEKEYLLKDAITLKDYNKLED--FE 283 Query: 318 DAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 +++IR + P+P+ ++ N D V + ++ VA GQ Y D Sbjct: 284 KD-----NMYIQIRYNSKPIPIKHIEENKDNVIIFLKEPATQVAKGQVGAIYFGDI---- 334 Query: 377 VLGGGIIS 384 +LGGGIIS Sbjct: 335 LLGGGIIS 342 >gi|154484582|ref|ZP_02027030.1| hypothetical protein EUBVEN_02298 [Eubacterium ventriosum ATCC 27560] gi|149734430|gb|EDM50347.1| hypothetical protein EUBVEN_02298 [Eubacterium ventriosum ATCC 27560] Length = 358 Score = 239 bits (611), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 134/366 (36%), Positives = 200/366 (54%), Gaps = 15/366 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRV 79 + ++AMSGGVDSSV A +K GYD IGVT++LY++ SK K +CC+ DV DAR V Sbjct: 3 KALIAMSGGVDSSVAAVFMKEKGYDPIGVTMKLYDNEDINMSKEK-TCCSLSDVEDARSV 61 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + +YVF+++ F+ VI F Y G TP PC+DCNR +KF +L + LG D Sbjct: 62 AYKVGFPYYVFNFKAEFKEKVIDKFVGCYMCGMTPNPCIDCNRYLKFEELYRRAKALGCD 121 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 V+ TGHY R R D+ + + + +D +DQSY L+ TQ+QL FPLG+ K+ Sbjct: 122 VIVTGHYARIRF---DEATGKYQLMKGIDDSKDQSYVLYHMTQEQLAHTMFPLGEYTKDE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R A E GL ADK DSQDICF+ G + ++ +G+ + +NG+++G+HNG Sbjct: 179 IRKKAAETGLINADKHDSQDICFIPDGNHMKFIEEYTHKKVGKGNFLDINGKVIGQHNGY 238 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YT+GQR+G+ V +V+ + ++ V+VG + L + + NW+ +A Sbjct: 239 YRYTVGQRKGINVNRDGKHYVLEIRPETNEVVVGRNKDLFTEELVATDFNWISG----EA 294 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 K + R Q + ++G V V F++ + GQ+ V Y D VL Sbjct: 295 PTGEIKVSGRTRYHQPLTEGVAKVLENGDVKVSFDEPIRAITKGQSVVLYDGDV----VL 350 Query: 379 GGGIIS 384 GGG I Sbjct: 351 GGGTIK 356 >gi|72382697|ref|YP_292052.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str. NATL2A] gi|123620903|sp|Q46JH9|MNMA_PROMT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|72002547|gb|AAZ58349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus str. NATL2A] Length = 388 Score = 239 bits (611), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 148/380 (38%), Positives = 211/380 (55%), Gaps = 35/380 (9%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV +SGGVDSS+ AALL + G+DV G+TL L K KGSCC+ + DA +CD Sbjct: 23 VVVGLSGGVDSSLTAALLCKAGWDVEGLTLWLM------KGKGSCCS-DGLVDAAGICDQ 75 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVL 141 + + H++ D +E F+ +I Y G TPLPC CN++VKFS++L V + + Sbjct: 76 LGIKHHIVDSKEIFQKEIINNVLKGYEEGITPLPCSRCNKSVKFSEMLKWVKENKNIEKI 135 Query: 142 ATGHYIRSRLY--------VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 ATGHY R R + DG +R + R DL +DQSYFL+ Q+ L FPLG Sbjct: 136 ATGHYARIRYSNESFNENDLPSDGIKRHKLLRGKDLNKDQSYFLYDLPQEILGKTIFPLG 195 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQI 252 ++ KE R A + L A K +SQD+C + Y + I+ + + G++V NGQI Sbjct: 196 ELTKEITRIEALKHSLKTAKKPESQDLCLAEH--YGSMNAFIDKYLPQKKGEVVLKNGQI 253 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G HNGI ++TIGQR+GLG+A PL VV +D + +RVIV PRE +++INW+ Sbjct: 254 IGSHNGIQHFTIGQRKGLGIAWEVPLHVVEIDASLNRVIVAPREDSGKSECIVKDINWVS 313 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDP-----VPVFVQRNDDGVY---VDFEKSEVGVASGQA 364 +A + + V+IR +P+F ++ Y + FEK + + GQA Sbjct: 314 I----EAPQEPIEVEVQIRYRSKAMKAKLIPIFDSNKENYCYKCNIHFEKDQFSITPGQA 369 Query: 365 CVFYTSDSNEARVLGGGIIS 384 VFY D VLGGG+IS Sbjct: 370 AVFYKGD----YVLGGGLIS 385 >gi|297565299|ref|YP_003684271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Meiothermus silvanus DSM 9946] gi|296849748|gb|ADH62763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Meiothermus silvanus DSM 9946] Length = 371 Score = 239 bits (611), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 145/369 (39%), Positives = 205/369 (55%), Gaps = 31/369 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+VAMSGGVDSSV AALLK GY+VIG ++ + K +CC+ Y+ARRV D Sbjct: 7 RVLVAMSGGVDSSVSAALLKAQGYEVIGAMMRFWPDNKKDDCFETCCSPDAAYEARRVAD 66 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + V Y+ DY E F+ +I PF + YAAGETP PCV+CN VKF LL R LG D + Sbjct: 67 IVGVPFYLLDYREEFQEKIIDPFIAGYAAGETPNPCVNCNTRVKFDSLLKKARMLGCDFV 126 Query: 142 ATGHYI---RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 ATGHY+ + L+ GD ++DQ+YFL+ T ++ + + FP+G ++K Sbjct: 127 ATGHYVIREGNALFRGDP-------------KKDQTYFLWGTPKEAIPHMMFPVGHLEKP 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR +A + GL A K +SQ+ICFV QG + + N A G +V L G+++G H Sbjct: 174 QVRAIAEQYGLPTAKKPESQNICFV-QGDLKEFLS--NHLTARPGPLVDLETGEVIGEHA 230 Query: 258 GIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G YT+GQ++GLG+ +VV ++ ++ VIVGPRE+ + RE+N L Sbjct: 231 GAQFYTVGQKKGLGLFKTHLERYVVRVNPATNEVIVGPREACLWSGLEAREVN-----LL 285 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + V++R PV V+R D G+ V + + V GQ+ V Y D Sbjct: 286 VEPEELPETLEVQVRYRTKPVLGKVERLGDGGMTVRLAEPQFAVTPGQSMVLYQGD---- 341 Query: 376 RVLGGGIIS 384 R+LGGG I Sbjct: 342 RLLGGGFIQ 350 >gi|311740584|ref|ZP_07714411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304104|gb|EFQ80180.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] Length = 365 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 151/376 (40%), Positives = 203/376 (53%), Gaps = 26/376 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRV 79 MRV+VAMSGGVDSSV AA G++VIGV L L+ + ++ K CC+ +D DARR+ Sbjct: 5 MRVLVAMSGGVDSSVAAARAVEAGHEVIGVHLALHKDAQQTREKARGCCSLEDSADARRI 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + + YV+D+ E F+ VI F SYA GETP PC+ CN +KF LL LG D Sbjct: 65 CDKLGIPFYVWDFSEEFKEEVITDFVDSYARGETPNPCLRCNEKIKFRALLQKGMALGFD 124 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + DG R R +D ++DQSY L + ++L FP+GD K Sbjct: 125 AVATGHYAT----IDKDGYMR----RSLDEKKDQSYVLGVISAEELEHCFFPIGDTPKPQ 176 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNG 258 +R+ A G A K DS DICF+ G + + A I L G IV G L H+G Sbjct: 177 IREEAAAHGFSTAKKPDSYDICFIPDG---NTQAFLGARIGLRPGMIVDQEGTELKEHDG 233 Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 NYTIGQR+GL + A G P +V +D + V VG RE L V I + +L G Sbjct: 234 AWNYTIGQRKGLDIKAPAADGRPRYVTDIDAVTGTVTVGAREDLAVTSIQADRLKYLHPG 293 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + D F+C V++R+ VP V R D + ++ ++S GVA GQA V Y Sbjct: 294 MDGD-----FECEVQVRAHGSVVPCTAHVDREADEMRLELKESLSGVARGQAAVLYLPSP 348 Query: 373 NEAR--VLGGGIISGS 386 +E V+G G I G+ Sbjct: 349 DELGDIVIGSGTICGT 364 >gi|170755772|ref|YP_001782543.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum B1 str. Okra] gi|205810298|sp|B1ILH4|MNMA1_CLOBK RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 gi|169120984|gb|ACA44820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum B1 str. Okra] Length = 353 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 206/363 (56%), Gaps = 19/363 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V +AMSGGVDSSV A +LK GYDVIG+ + L+ + C DARRV + Sbjct: 6 VALAMSGGVDSSVSAYILKERGYDVIGIYMDLWRDEREE-----YCNKSAAEDARRVAEK 60 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 +++ +V + E++F++ VI F Y +G TP PCV CNRT+KF + ++ GAD +A Sbjct: 61 LDIPFHVINIEKKFKDNVIDYFIDEYLSGRTPNPCVACNRTIKFEAFFNAAKEFGADFMA 120 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + G R+++ + D ++DQ+Y ++ Q QL P G+ KK+ +R+ Sbjct: 121 TGHYCKIEERNG-----RKVIVKAEDDKKDQTYMMYNLKQYQLERTIMPCGEYKKDYIRE 175 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A +GLD+ +K DSQ+ICF+ + +KR EG+ V G I+G+H GII Y Sbjct: 176 IAENIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKSKVSEGNFVDKKGNIIGKHKGIIYY 235 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A+G+P +V+ ++ ++ V++G E + + R++N++ E ++ Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGDEEDIFRTELIARDVNFIPFDKLEKSM-- 293 Query: 323 GFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + K+R S P + ++ V V F+ + + GQ+ VFY D ++GGG Sbjct: 294 --ELEAKVRYSAKPSKATIIPLENNKVKVVFQNKQRAITKGQSVVFYDKDM----LVGGG 347 Query: 382 IIS 384 II Sbjct: 348 IIE 350 >gi|153939777|ref|YP_001392187.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum F str. Langeland] gi|205810589|sp|A7GHC7|MNMA2_CLOBL RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|152935673|gb|ABS41171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum F str. Langeland] gi|295320186|gb|ADG00564.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum F str. 230613] Length = 353 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 128/364 (35%), Positives = 205/364 (56%), Gaps = 19/364 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V +AMSGGVDSSV A +LK GYDVIG+ + L+ + C DARRV + Sbjct: 6 VALAMSGGVDSSVSAYILKERGYDVIGIYMDLWRDEREE-----YCNKSAAEDARRVAEK 60 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 +++ +V + E++F+N VI F Y +G TP PCV CN+T+KF + ++ GAD +A Sbjct: 61 LDIPFHVINIEKKFKNNVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEFGADFMA 120 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + G R+++ + D ++DQ+Y ++ Q QL P G+ KK+ +R+ Sbjct: 121 TGHYCKIEERNG-----RKVIVKAEDDKKDQTYMMYNLKQYQLERTIMPCGEYKKDHIRE 175 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A +GLD+ +K DSQ+ICF+ + +KR EG+ V G I+G+H GII Y Sbjct: 176 IAESIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKRKISEGNFVDKEGNIIGKHKGIIYY 235 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A+G+P +V+ ++ ++ V++G E + + +++N++ E + Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGEEEDIFRTELIAKDVNFIPFDKLEKPM-- 293 Query: 323 GFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + K+R S P + ++ V V F+ + + GQ+ VFY D + GGG Sbjct: 294 --ELEAKVRYSAKPSKATIIPLENNKVKVVFQNKQRAITKGQSVVFYDKDI----LAGGG 347 Query: 382 IISG 385 II G Sbjct: 348 IIEG 351 >gi|116328677|ref|YP_798397.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330666|ref|YP_800384.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122281579|sp|Q04TZ4|MNMA_LEPBJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|122283538|sp|Q04ZN1|MNMA_LEPBL RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|116121421|gb|ABJ79464.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124355|gb|ABJ75626.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 377 Score = 239 bits (611), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 140/380 (36%), Positives = 222/380 (58%), Gaps = 13/380 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDARRV 79 +++VAMSGGVDS+V A LL +GY+VIGV L+ Y + K SCC+ +D+ DAR V Sbjct: 5 KIIVAMSGGVDSAVTAGLLMEEGYEVIGVNLRTWEYEAPVCDTTKKSCCSPEDIRDARDV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 ++ + YV E+ F+ VI F Y G+TP PCV+CN VKF L + LG D Sbjct: 65 GLSLKIPFYVVKMEKVFQEKVIDRFIDDYQHGKTPNPCVECNTFVKFGALFEKAKALGID 124 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + +G+R I +D+ ++Q+Y+L+ +Q+ L ++ FPLG M K Sbjct: 125 KIATGHYAR----IVRNGERYAI-SNGVDIGKNQAYYLYGLSQENLKNVTFPLGGMTKPE 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++AR MGL +ADK++SQ+ICF+ + Y +++ + G +G+I+G+H G Sbjct: 180 VREIARRMGLSVADKAESQEICFIPENDYRKFLEKKHVEFT-PGFFKLRDGRIIGKHKGR 238 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 N+TIGQR+GLG+A PL+V+ ++ + S VI+G + ++N+ G + Sbjct: 239 ENFTIGQRKGLGIAWRNPLYVIAIEDDGS-VILGEENETYAESFSVIDVNYQGFAPLGEG 297 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + F+C V++R P+ + + ++ + V+ + GV GQ+ VFY +S+ +LG Sbjct: 298 --ESFECRVQVRYRHTPIRCRITKMNEDLVVNPLEEVRGVTPGQSAVFYPLNSDYL-LLG 354 Query: 380 GGIISGSKRSD-AVEESLLS 398 G I GS R A EES ++ Sbjct: 355 GIIRKGSIRMQVAKEESAIA 374 >gi|220906770|ref|YP_002482081.1| tRNA-specific 2-thiouridylase MnmA [Cyanothece sp. PCC 7425] gi|219863381|gb|ACL43720.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cyanothece sp. PCC 7425] Length = 368 Score = 239 bits (610), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 141/376 (37%), Positives = 214/376 (56%), Gaps = 26/376 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 ++ ++ VVV +SGGVDSSV AA L GY V+G+TL L K KG CC+ + + Sbjct: 7 NQTEQNKSVVVGLSGGVDSSVAAASLHHQGYRVVGLTLWLM------KGKGQCCS-EGLV 59 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA ++C+ + V H++ D E F++ ++ + Y+ G TPLPC CNRTVKF +L + Sbjct: 60 DAAQLCEELGVPHHIVDSRELFQSQIVDYLVAGYSDGITPLPCSQCNRTVKFGPMLHYAQ 119 Query: 135 -QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +LG + +ATGHY R + D R + R +D +DQSYFL+ TQ L FPLG Sbjct: 120 TELGIETIATGHYARITV---DPQTGRYQLRRAVDRSKDQSYFLYDLTQAHLAHTLFPLG 176 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV--KRINAGIALEGDIVHLNGQ 251 + K + R +A + L A+K +SQD+C ++ K IN ++G+IV G+ Sbjct: 177 EQTKATTRQIAAQFNLHTAEKPESQDLCLIETHGSMQAFLDKYINP---IQGEIVDRQGR 233 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 +LG H GI +YTIGQR+GLG+A +PL+V+ LD+ +RVIVG RE ++ +NW+ Sbjct: 234 VLGYHQGIHHYTIGQRKGLGIAAAQPLYVIGLDRAMNRVIVGDREEAVQSECTVQRVNWV 293 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG----VYVDFEKSEVGVASGQACVF 367 + + + ++ RSS PV V ++G V + F++ + G+ GQA V+ Sbjct: 294 SIAPPDAPIAAEVQ--IRYRSSPVPVTVVPLPEEEGRSNRVKLIFDQPQFGITPGQAAVW 351 Query: 368 YTSDSNEARVLGGGII 383 Y D +LGGGI+ Sbjct: 352 YQGDV----LLGGGIL 363 >gi|166031729|ref|ZP_02234558.1| hypothetical protein DORFOR_01429 [Dorea formicigenerans ATCC 27755] gi|166028182|gb|EDR46939.1| hypothetical protein DORFOR_01429 [Dorea formicigenerans ATCC 27755] Length = 359 Score = 239 bits (610), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 144/368 (39%), Positives = 205/368 (55%), Gaps = 20/368 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK--GSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ K++ G CC V DARRV Sbjct: 5 KVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEDEFKQQEEGGCCGLSAVEDARRV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + +YV +++ F+ VI F Y G TP PC+ CNR VK+ LL+ ++GAD Sbjct: 65 AARLGIPYYVMNFKNEFKKYVIDYFIDDYLHGRTPNPCIACNRYVKWESLLTRAMEIGAD 124 Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY + +L G R I + +DQ+Y L+ TQ QL P+G K+ Sbjct: 125 YIATGHYAQVEQLPSG----RYSIKTSVTSM-KDQTYALYNLTQDQLSKTLMPVGKYSKD 179 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR-INAGIALEGDIVHLNGQILGRHN 257 VR +A +GL +A K DSQDICFV G Y ++ AG G+ V +G I+G+H Sbjct: 180 EVRKMAENIGLLVAHKPDSQDICFVPDGDYATYIEENTAAGSIRPGNFVTSDGTIVGQHK 239 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GII+YT+GQR+GLG+++G P FV+ + ++ V+VG E + +N++ Sbjct: 240 GIIHYTVGQRKGLGLSLGHPAFVLEIRPETNEVVVGTNEESMSRYVRANHVNFM-----S 294 Query: 318 DAVVDGFK-CFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 A +DG K + KIR + V+R +D + F++ + GQA V Y + Sbjct: 295 VADIDGKKRAWGKIRYNHKGAWCTVERTGEDEILCTFDEPVRAITPGQALVLYDGE---- 350 Query: 376 RVLGGGII 383 VLGGG I Sbjct: 351 YVLGGGTI 358 >gi|237756395|ref|ZP_04584939.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfurihydrogenibium yellowstonense SS-5] gi|237691446|gb|EEP60510.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfurihydrogenibium yellowstonense SS-5] Length = 352 Score = 239 bits (610), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 136/366 (37%), Positives = 211/366 (57%), Gaps = 17/366 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSS A LLK+ GY+V+G++L+ + CC+ +D+ DA++V + Sbjct: 3 KVVVGLSGGVDSSTAAFLLKKQGYEVVGISLKFTDIDSCEVDTQVCCSDKDILDAKKVAE 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + HYV ++++ F VI F Y +G TP PC CNR VK + LG D L Sbjct: 63 FLEIPHYVINWKDIFEKKVINYFIEGYKSGLTPNPCSICNREVKTGLFAKYIKSLGFDYL 122 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHYIR+ + +DG +++ R +D +DQSYF+ ++ + L FPLG++ KE VR Sbjct: 123 ATGHYIRTDI---EDG--VKVLKRGIDKNKDQSYFMALVEREVVDTLIFPLGNLTKEEVR 177 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A+E + ++ K +S +ICF + + K +N EG+IVH++G++LGRH GI N Sbjct: 178 KIAQENKIPVSQKEESFEICFTKGKSPEEYFKTLNIKTN-EGEIVHISGKVLGRHKGIEN 236 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQRRGL +A EPL+V+ D +++++VG ++ L ++ ++ N+L + Sbjct: 237 YTIGQRRGLNIAWKEPLYVIEKDALNNKIVVGEKDYLLTDKVVAKDFNFLV------PIE 290 Query: 322 DGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 K V+ R Q P+ D + + V FE+ A GQ Y D+ +LGG Sbjct: 291 KWKKIEVQGRYKQKPIKAKEYHFDGENLTVIFEEKVPRFAPGQILAVYDGDT----LLGG 346 Query: 381 GIISGS 386 GIIS S Sbjct: 347 GIISRS 352 >gi|313807611|gb|EFS46098.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL087PA2] gi|313818648|gb|EFS56362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL046PA2] gi|313820418|gb|EFS58132.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL036PA1] gi|313822776|gb|EFS60490.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL036PA2] gi|313825290|gb|EFS63004.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL063PA1] gi|314925110|gb|EFS88941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL036PA3] gi|314960438|gb|EFT04540.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL002PA2] gi|314978611|gb|EFT22705.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL072PA2] gi|314988029|gb|EFT32120.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL005PA2] gi|314989840|gb|EFT33931.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL005PA3] gi|315084219|gb|EFT56195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL027PA2] gi|315085563|gb|EFT57539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL002PA3] gi|315088383|gb|EFT60359.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL072PA1] gi|327443626|gb|EGE90280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL013PA2] gi|328753381|gb|EGF66997.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL020PA1] Length = 360 Score = 239 bits (610), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 148/370 (40%), Positives = 208/370 (56%), Gaps = 25/370 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84 MSGGVDS+V AA L G+DV GV L L + + S R+GS CC+ +D +DARR D + Sbjct: 1 MSGGVDSAVAAARLVEAGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFDARRAADRLG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG D +ATG Sbjct: 60 IPFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATG 119 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY R+++ DG + + R +D +DQSY L Q QL FPLG+ K +VR A Sbjct: 120 HYARTKVV---DGVTK--LYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKMNVRQEA 174 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHNGIINYT 263 +GL +ADK DS DICF+ G D ++ I + +G+I +G ++G HNG ++T Sbjct: 175 TALGLSVADKPDSNDICFIPDG---DTPGWLSEKIGSADGEIRDESGALVGHHNGYHHFT 231 Query: 264 IGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 IGQRRGL + + G+P +V+ ++ ++ V+VG E L VH I W Sbjct: 232 IGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWC-----SSE 286 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 V+ + ++R+ DPVP + GV V+ E S GVA GQA VFY D V+G Sbjct: 287 PVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD----LVVG 342 Query: 380 GGIISGSKRS 389 I G+ R+ Sbjct: 343 SATICGTDRA 352 >gi|313764363|gb|EFS35727.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL013PA1] gi|313792051|gb|EFS40152.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL110PA1] gi|313802000|gb|EFS43234.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL110PA2] gi|313812853|gb|EFS50567.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL025PA1] gi|313815901|gb|EFS53615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL059PA1] gi|313827583|gb|EFS65297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL063PA2] gi|313838822|gb|EFS76536.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL086PA1] gi|314915354|gb|EFS79185.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL005PA4] gi|314918090|gb|EFS81921.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL050PA1] gi|314920172|gb|EFS84003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL050PA3] gi|314931695|gb|EFS95526.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL067PA1] gi|314955597|gb|EFS99998.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL027PA1] gi|314957994|gb|EFT02097.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL002PA1] gi|314962706|gb|EFT06806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL082PA1] gi|314967428|gb|EFT11527.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL037PA1] gi|315098625|gb|EFT70601.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL059PA2] gi|315101372|gb|EFT73348.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL046PA1] gi|315105724|gb|EFT77700.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL030PA1] gi|315108590|gb|EFT80566.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL030PA2] gi|327330347|gb|EGE72096.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL097PA1] gi|327450691|gb|EGE97345.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL087PA3] gi|327453231|gb|EGE99885.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL092PA1] gi|327453970|gb|EGF00625.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL083PA2] gi|328753227|gb|EGF66843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL025PA2] gi|328754110|gb|EGF67726.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL087PA1] Length = 360 Score = 239 bits (609), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 148/370 (40%), Positives = 208/370 (56%), Gaps = 25/370 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84 MSGGVDS+V AA L G+DV GV L L + + S R+GS CC+ +D +DARR D + Sbjct: 1 MSGGVDSAVAAARLVEAGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFDARRAADRLG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG D +ATG Sbjct: 60 IPFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATG 119 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY R+++ DG + + R +D +DQSY L Q QL FPLG+ K +VR A Sbjct: 120 HYARTKVV---DGVTK--LYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKMNVRQEA 174 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHNGIINYT 263 +GL +ADK DS DICF+ G D ++ I + +G+I +G ++G HNG ++T Sbjct: 175 AALGLSVADKPDSNDICFIPDG---DTPGWLSEKIGSADGEIRDESGALVGHHNGYHHFT 231 Query: 264 IGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 IGQRRGL + + G+P +V+ ++ ++ V+VG E L VH I W Sbjct: 232 IGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWC-----SSE 286 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 V+ + ++R+ DPVP + GV V+ E S GVA GQA VFY D V+G Sbjct: 287 PVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD----LVVG 342 Query: 380 GGIISGSKRS 389 I G+ R+ Sbjct: 343 SATICGTDRA 352 >gi|322807224|emb|CBZ04798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum H04402 065] Length = 353 Score = 239 bits (609), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 127/363 (34%), Positives = 207/363 (57%), Gaps = 19/363 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V +AMSGGVDSSV A +LK GYDVIG+ + L+ + C DARRV + Sbjct: 6 VALAMSGGVDSSVSAYILKERGYDVIGIYMDLWRDEREE-----YCNKSAAEDARRVAEK 60 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 +++ +V + E++F++ VI F Y +G TP PCV CN+T+KF + ++ GAD +A Sbjct: 61 LDIPFHVINIEKKFKDNVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEFGADFMA 120 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + G R+++ + D ++DQ+Y ++ Q QL P G+ KK+ +R+ Sbjct: 121 TGHYCKIEERNG-----RKVIVKAEDDKKDQTYMMYNLKQYQLERTIMPCGEYKKDHIRE 175 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A +GLD+ +K DSQ+ICF+ + +KR +G+ V G+I+G+H GII Y Sbjct: 176 IAENIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKSKIKQGNFVDKAGKIIGKHKGIIYY 235 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A+G+P +V+ ++ ++ V++G E + + R++N++ E ++ Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGDEEDIFRTELIARDVNFIPFDKLEKSM-- 293 Query: 323 GFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + K+R S P + ++ V V FE + + GQ+ VFY D ++GGG Sbjct: 294 --ELEAKVRYSAKPSKATIIPLENNKVKVVFESKQRAITKGQSVVFYDKDM----LVGGG 347 Query: 382 IIS 384 II Sbjct: 348 IIE 350 >gi|168179339|ref|ZP_02614003.1| tRNA -methyltransferase [Clostridium botulinum NCTC 2916] gi|226950335|ref|YP_002805426.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum A2 str. Kyoto] gi|182669769|gb|EDT81745.1| tRNA -methyltransferase [Clostridium botulinum NCTC 2916] gi|226844215|gb|ACO86881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A2 str. Kyoto] Length = 353 Score = 239 bits (609), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 128/364 (35%), Positives = 205/364 (56%), Gaps = 19/364 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V +AMSGGVDSSV A +LK GYDVIG+ + L+ + C DARRV + Sbjct: 6 VALAMSGGVDSSVSAYILKERGYDVIGIYMDLWRDEREE-----YCNKSAAEDARRVAEK 60 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 +++ +V + E++F++ VI F Y +G TP PCV CN+T+KF + ++ GAD +A Sbjct: 61 LDIPFHVINIEKKFKDNVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEFGADFMA 120 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + G R+++ + D ++DQ+Y ++ Q QL P G+ KK+ +R+ Sbjct: 121 TGHYCKIEERNG-----RKVIVKAEDDKKDQTYMMYNLKQYQLERTIMPCGEYKKDHIRE 175 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A +GLD+ +K DSQ+ICF+ + +KR EG+ V G I+G+H GII Y Sbjct: 176 IAESIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKRKISEGNFVDKEGNIIGKHKGIIYY 235 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A+G+P +V+ ++ ++ V++G E + + +++N++ E + Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGEEEDIFRTELIAKDVNFIPFDKLEKPM-- 293 Query: 323 GFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + K+R S P + ++ V V FE + + GQ+ VFY D + GGG Sbjct: 294 --ELEAKVRYSAKPSKATIIPLENNKVKVVFENKQRAITKGQSVVFYDKDI----LAGGG 347 Query: 382 IISG 385 II G Sbjct: 348 IIEG 351 >gi|148380860|ref|YP_001255401.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A str. ATCC 3502] gi|153934263|ref|YP_001385167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A str. ATCC 19397] gi|153935159|ref|YP_001388636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A str. Hall] gi|205810535|sp|A7FXG3|MNMA2_CLOB1 RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|205810559|sp|A5I5Y9|MNMA2_CLOBH RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|148290344|emb|CAL84469.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A str. ATCC 3502] gi|152930307|gb|ABS35807.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A str. ATCC 19397] gi|152931073|gb|ABS36572.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A str. Hall] Length = 353 Score = 239 bits (609), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 210/363 (57%), Gaps = 19/363 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V +AMSGGVDSSV A +LK GYDVIG+ + L+ +RKG C DARRV + Sbjct: 6 VALAMSGGVDSSVSAYILKERGYDVIGIYMDLWRD----ERKGYCNKSA-AEDARRVAEK 60 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 +++ +V + E++F++ VI F Y +G TP PCV CN+T+KF + ++ GAD +A Sbjct: 61 LDIPFHVINIEKKFKDNVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEFGADFMA 120 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + G R+++ + D ++DQ+Y ++ Q QL P G+ KK+ +R+ Sbjct: 121 TGHYCKIEERNG-----RKVIVKAEDDKKDQTYMMYNLKQYQLERTIMPCGEYKKDHIRE 175 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A +GLD+ +K DSQ+ICF+ + +KR +G+ V G+I+G+H GII Y Sbjct: 176 IAENIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKSKIKQGNFVDKAGKIIGKHKGIIYY 235 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A+G+P +V+ ++ ++ V++G E + + +++N++ E ++ Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGDEEDIFRTELIAKDVNFIPFDKLEKSM-- 293 Query: 323 GFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + K+R S P + ++ V V F+ + + GQ+ VFY D ++GGG Sbjct: 294 --ELEAKVRYSAKPSKATIIPLENNKVKVVFQNKQRAITKGQSVVFYDKDM----LVGGG 347 Query: 382 IIS 384 II Sbjct: 348 IIE 350 >gi|328950099|ref|YP_004367434.1| tRNA-specific 2-thiouridylase mnmA [Marinithermus hydrothermalis DSM 14884] gi|328450423|gb|AEB11324.1| tRNA-specific 2-thiouridylase mnmA [Marinithermus hydrothermalis DSM 14884] Length = 374 Score = 239 bits (609), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 145/365 (39%), Positives = 200/365 (54%), Gaps = 20/365 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+ AMSGGVDSSV AALLK GY+VIG ++ + K +CC+ Y+ARRV D Sbjct: 8 RVLAAMSGGVDSSVTAALLKEQGYEVIGAMMRFWPDNKPEDCFNTCCSPDAAYEARRVAD 67 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + Y+ DY E F +I PF Y GETP+PCV CN VKF LL R LG D + Sbjct: 68 QIGIPFYLLDYREVFEVEIIQPFLEGYRRGETPIPCVWCNTRVKFDALLKKARMLGCDYV 127 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R +G + R D +DQ+YFL+ T ++ + + FP+G M+K VR Sbjct: 128 ATGHYVRR-----VEGPQGIEFHRGGDPRKDQTYFLWGTPREAMPHILFPVGHMQKPEVR 182 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGII 260 LA GL A K +SQ+ICFV G ++ G G ++ L G+++G H G Sbjct: 183 RLAERFGLITAKKPESQNICFV-PGSVRAFLEEHLGGQP--GPVIDLETGEVIGEHAGAQ 239 Query: 261 NYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YT+GQR+GLG+ +VV + ++ VIVGPRE+ + + REIN L D Sbjct: 240 FYTVGQRKGLGLWKTHLERYVVEVRPQTNEVIVGPREACQWRGLEAREINLLLDPETLPE 299 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYV-DFEKSEVGVASGQACVFYTSDSNEARVL 378 VV ++R Q P V+ G +V +F++ + V GQ+ V Y D R+L Sbjct: 300 VVT-----AQVRYRQRPARARVRELGAGRFVLEFDEPQFAVTRGQSVVLYDGD----RLL 350 Query: 379 GGGII 383 GGG+I Sbjct: 351 GGGVI 355 >gi|254431220|ref|ZP_05044923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cyanobium sp. PCC 7001] gi|197625673|gb|EDY38232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cyanobium sp. PCC 7001] Length = 399 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 148/389 (38%), Positives = 215/389 (55%), Gaps = 33/389 (8%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 L P + RV V +SGGVDSS+ AALL G++V G+TL L + KG+CCA + + Sbjct: 25 LRHWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMSG------KGACCA-EGL 77 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA +C+ + V H+V D+ + FR ++ YAAG TPLPC CNR VKF+ +L+ Sbjct: 78 VDAAGICEQLGVPHHVVDFRDHFRAQIVDFLVDGYAAGVTPLPCSRCNREVKFAPMLAWA 137 Query: 134 R-QLGADVLATGHYIRSR-------LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 R Q G + LATGHY R R L V DG+ R + R +D +DQSYFL+ Q+ L Sbjct: 138 REQRGLERLATGHYARVRRADAADPLPVPGDGRGRHQLLRGLDARKDQSYFLYDLPQEVL 197 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGD 244 L FPLG++ K R A GL A K +SQD+C + + ++A + +G+ Sbjct: 198 GRLVFPLGELTKPDTRQEAERHGLRTAHKPESQDLCLADH--HGSMRAFLDAHLPPRDGE 255 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 IV +G+++GRH+GI ++TIGQR+GLGVA EPL VV LD +RV+V PR Sbjct: 256 IVLQDGRVVGRHDGIEHFTIGQRKGLGVAWSEPLHVVRLDAAFNRVVVAPRREAARGDCV 315 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQD-----PVPVF----VQRNDDGVYVDFEKS 355 + +NW+ DA ++ V+ RS+ + P+P + V ++F + Sbjct: 316 VGAVNWVSMAA-PDAPLE-VMVQVRYRSAPEWALLTPLPATEVDQAAQRPHRVRLEFAEE 373 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGIIS 384 + + GQA VFY + +LGGG+I Sbjct: 374 QFSITPGQAAVFYAGEV----LLGGGLIQ 398 >gi|327331848|gb|EGE73585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL096PA3] Length = 360 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 148/370 (40%), Positives = 208/370 (56%), Gaps = 25/370 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84 MSGGVDS+V AA L G+DV GV L L + + S R+GS CC+ +D +DARR D + Sbjct: 1 MSGGVDSAVAAARLVEAGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFDARRAADRLG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG D +ATG Sbjct: 60 IPFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATG 119 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY R+++ DG + + R +D +DQSY L Q QL FPLG+ K +VR A Sbjct: 120 HYARTKVV---DGVTK--LYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKMNVRQEA 174 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHNGIINYT 263 +GL +ADK DS DICF+ G D ++ I + +G+I +G ++G HNG ++T Sbjct: 175 TALGLSVADKPDSNDICFIPDG---DTPGWLSDKIGSADGEIRDESGALVGHHNGYHHFT 231 Query: 264 IGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 IGQRRGL + + G+P +V+ ++ ++ V+VG E L VH I W Sbjct: 232 IGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWC-----SSE 286 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 V+ + ++R+ DPVP + GV V+ E S GVA GQA VFY D V+G Sbjct: 287 PVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD----LVVG 342 Query: 380 GGIISGSKRS 389 I G+ R+ Sbjct: 343 SATICGTDRA 352 >gi|295102218|emb|CBK99763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Faecalibacterium prausnitzii L2-6] Length = 370 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 134/364 (36%), Positives = 196/364 (53%), Gaps = 13/364 (3%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCD 81 ++AMSGGVDSSV A L++RDG+D GVT++L N ++ +CC+ +D+ DA V Sbjct: 13 ALIAMSGGVDSSVAAWLMQRDGFDCTGVTMRLTRNEAVNTEGLHTCCSERDIEDAAEVAY 72 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ + V D+ F+ +I F Y AG TP PC+DCNR +KF LL G D + Sbjct: 73 AMDIPYEVLDFTADFQERIIDKFIRVYEAGGTPNPCIDCNRYMKFDHLLRWAEAHGLDHV 132 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 TGHY R D+ R ++ + +D +DQSY L+ TQ+QL +R PLG + K VR Sbjct: 133 VTGHYARVEQ---DEATGRWLLKKGLDENKDQSYVLYNLTQEQLAHVRLPLGGLHKSEVR 189 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + A K DSQDICFV G Y ++ GD + + G+ +G H+G + Sbjct: 190 AIAEQQHFVNARKHDSQDICFVPDGDYARFMEEFTGKHYPAGDFLDVGGKKVGTHSGAVR 249 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQR+GLG+AMG P++V D ++ V VGP L +Y E+NW+ + + Sbjct: 250 YTIGQRKGLGLAMGAPVYVCAKDMQANTVTVGPESELFDTIVYANEVNWIAIPELKGPL- 308 Query: 322 DGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 + + R Q P V D ++F++ + GQA V Y D VLGG Sbjct: 309 ---RVTARTRYHQTEQPATVYPAGPDSFRLEFDQPQRAPTPGQAVVLYQGDV----VLGG 361 Query: 381 GIIS 384 G I+ Sbjct: 362 GTIT 365 >gi|313772254|gb|EFS38220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL074PA1] gi|313810119|gb|EFS47840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL083PA1] gi|313830448|gb|EFS68162.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL007PA1] gi|313833819|gb|EFS71533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL056PA1] gi|314973449|gb|EFT17545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL053PA1] gi|314976129|gb|EFT20224.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL045PA1] gi|314983850|gb|EFT27942.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL005PA1] gi|315080547|gb|EFT52523.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL078PA1] gi|315095996|gb|EFT67972.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL038PA1] gi|327326276|gb|EGE68066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL096PA2] gi|327445830|gb|EGE92484.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL043PA2] gi|327448188|gb|EGE94842.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL043PA1] gi|328760764|gb|EGF74330.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL099PA1] Length = 360 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 148/370 (40%), Positives = 208/370 (56%), Gaps = 25/370 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84 MSGGVDS+V AA L G+DV GV L L + + S R+GS CC+ +D +DARR D + Sbjct: 1 MSGGVDSAVAAARLVEAGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFDARRAADRLG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG D +ATG Sbjct: 60 IPFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATG 119 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY R+++ DG + + R +D +DQSY L Q QL FPLG+ K +VR A Sbjct: 120 HYARTKVV---DGVTK--LYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKMNVRQEA 174 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHNGIINYT 263 +GL +ADK DS DICF+ G D ++ I + +G+I +G ++G HNG ++T Sbjct: 175 AALGLSVADKPDSNDICFIPDG---DTRGWLSEKIGSADGEIRDESGALVGHHNGYHHFT 231 Query: 264 IGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 IGQRRGL + + G+P +V+ ++ ++ V+VG E L VH I W Sbjct: 232 IGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWC-----SSE 286 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 V+ + ++R+ DPVP + GV V+ E S GVA GQA VFY D V+G Sbjct: 287 PVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD----LVVG 342 Query: 380 GGIISGSKRS 389 I G+ R+ Sbjct: 343 SATICGTDRA 352 >gi|206901317|ref|YP_002250407.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dictyoglomus thermophilum H-6-12] gi|206740420|gb|ACI19478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dictyoglomus thermophilum H-6-12] Length = 345 Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 134/365 (36%), Positives = 207/365 (56%), Gaps = 27/365 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 ++V V MSGGVDSS A LLK++GY+VIG+T+ + S + DA ++ Sbjct: 3 IKVAVGMSGGVDSSTTAYLLKKEGYEVIGLTMNIAYS-------------DSIKDAEKIA 49 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +N+ H+ D + F +I F SY +G TP PC CNR +KF LL ++LGA+ Sbjct: 50 KYLNIPHFYVDLRKEFEEQIIKYFIDSYKSGYTPNPCTFCNRIIKFGLLLKKAQELGAEY 109 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY+R V D+ K+ ++ R DL++DQSYFL TQ+Q+ FPLGD+ K V Sbjct: 110 LATGHYVRK---VWDEEKKVFLLKRAKDLKKDQSYFLAYLTQEQIEKSLFPLGDLTKNEV 166 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R LA E+GL ++DK +SQDICF+ Y + R + +G I+ +G +G H+G+ Sbjct: 167 RKLAEEIGLFVSDKEESQDICFLPDRDYRKFLSRYL--VEKKGKIITEDGVEVGYHDGVF 224 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 ++TIGQRRGL VA+G+P++V + V+V RE + +Y + +N+ G+ + Sbjct: 225 SFTIGQRRGLRVALGKPVYVKKIIPEEGIVVVADREKIFSREVYAKNVNY-PSGMPREKE 283 Query: 321 VDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 ++ IR + +P P ++ ++ +Y+ FE+ + + GQ V Y D VL Sbjct: 284 LE---VKAMIRYNMEPQPALLKILSEKEIYLTFEEPQWAITPGQILVCYKDDY----VLC 336 Query: 380 GGIIS 384 GG+I Sbjct: 337 GGVIE 341 >gi|257437854|ref|ZP_05613609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Faecalibacterium prausnitzii A2-165] gi|257199514|gb|EEU97798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Faecalibacterium prausnitzii A2-165] Length = 371 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 135/370 (36%), Positives = 197/370 (53%), Gaps = 13/370 (3%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVY 74 +N K ++AMSGGVDSSV A L+++ GYD G+T++L N +CC+ +D+ Sbjct: 9 QNTKRPGALIAMSGGVDSSVAAWLMQQAGYDCTGITMRLTRNETLGQSGFHTCCSEKDIE 68 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA V +++ + V D+ FR +I F Y G TP PC+DCNR +KF LL Sbjct: 69 DAAEVAFAMDIPYEVLDFTADFREKIIEKFIRVYEMGGTPNPCIDCNRYMKFDHLLRWAE 128 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 G + + TGHY R D+ R ++ + +D +DQSY L+ TQ+QL +R PLG Sbjct: 129 SHGMEYVVTGHYARVEQ---DEATGRWLLKKGLDEGKDQSYVLYNLTQEQLAHVRLPLGG 185 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 + K VR++A + A K DSQDICFV G Y ++ GD + NG+ +G Sbjct: 186 LHKAEVREIAEKQHFINARKHDSQDICFVPDGDYARFMEDFTGKHYPAGDFLDENGKKVG 245 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 HNG + YTIGQR+GLG+AMG P++V D ++ V VGP E+L +Y E+NW+ Sbjct: 246 THNGAVRYTIGQRKGLGLAMGAPVYVCAKDMQANTVTVGPEENLFDRIVYADEVNWIAI- 304 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSN 373 + + + R Q V +G + ++F++ + GQA V Y D Sbjct: 305 ---PELTAPLRVTARTRYHQTEQAATVYPAGEGQFRLEFDQPQRAPTPGQAVVLYQGDV- 360 Query: 374 EARVLGGGII 383 VLGGG I Sbjct: 361 ---VLGGGTI 367 >gi|255324545|ref|ZP_05365662.1| tRNA-methyltransferase [Corynebacterium tuberculostearicum SK141] gi|255298451|gb|EET77751.1| tRNA-methyltransferase [Corynebacterium tuberculostearicum SK141] Length = 365 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 150/376 (39%), Positives = 202/376 (53%), Gaps = 26/376 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRV 79 MRV+VAMSGGVDSSV AA G++VIGV L L+ + ++ K CC+ +D DARR+ Sbjct: 5 MRVLVAMSGGVDSSVAAARAVEAGHEVIGVHLALHKDAQQTREKARGCCSLEDSADARRI 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + + YV+D+ E F+ VI F SYA GETP PC+ CN +KF LL LG D Sbjct: 65 CDKLGIPFYVWDFSEEFKEEVITDFVDSYARGETPNPCLRCNEKIKFRALLQKGMALGFD 124 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + +DG R R +D +DQSY L + ++L FP+GD K Sbjct: 125 AVATGHYAT----IDEDGYMR----RSLDENKDQSYVLGVISAEELEHCFFPIGDTPKPQ 176 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNG 258 +R+ A G A K DS DICF+ G + + A I L G IV G L H+G Sbjct: 177 IREEAAAHGFSTAKKPDSYDICFIPDG---NTQAFLGARIGLRPGMIVDQEGTELKEHDG 233 Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 NYTIGQR+GL + A G P +V +D + V VG RE L V I + +L G Sbjct: 234 AWNYTIGQRKGLDIKAPAADGRPRYVTDIDAATGTVTVGAREDLAVTSIQADLLKYLHPG 293 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + D F+C V++R+ VP V R D + ++ ++ GVA GQA V Y Sbjct: 294 MDGD-----FECEVQVRAHGSVVPCIAHVDREADEMRLELKEPLSGVARGQAAVLYLPSP 348 Query: 373 NEAR--VLGGGIISGS 386 +E V+G G I G+ Sbjct: 349 DELGDIVIGSGTICGT 364 >gi|325281886|ref|YP_004254428.1| tRNA-specific 2-thiouridylase mnmA [Odoribacter splanchnicus DSM 20712] gi|324313695|gb|ADY34248.1| tRNA-specific 2-thiouridylase mnmA [Odoribacter splanchnicus DSM 20712] Length = 364 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 128/373 (34%), Positives = 210/373 (56%), Gaps = 21/373 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDARRV 79 RV++AMSGG+DS+V A LL GY+++GVT + ++ SR +++ CC+ +++A+R+ Sbjct: 5 RVLMAMSGGIDSTVAAMLLLEQGYELVGVTYRTFDNISRGCMEKEKGCCSVDSLFEAKRM 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + H++ D + F++ VI F Y G TP PCV CN T+K+ L+ ++ D Sbjct: 65 AQELGFEHHILDIRQEFKDTVITNFIGEYLQGRTPNPCVICNSTIKWGKLIETANEMRCD 124 Query: 140 VLATGHYIRSRLYVG-DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R +G DG RR + + DL +DQ+YFL+ TQ+ L FPLG++ K Sbjct: 125 YIATGHYAR----IGHQDG--RRYLRKGADLSKDQTYFLWTLTQENLSRTLFPLGELTKP 178 Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILG 254 VR +A + G + ++ K +SQ+ICF+ Y + + G+ V +G+ LG Sbjct: 179 EVRQIAFDHGYEKLSKKGESQEICFIPGNDYRTFLAEQVENYTEKYGPGNFVDTSGKRLG 238 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H G NYTIGQR+GLG+A+G+P+FV+ + + V++G +E L+ + +EIN + Sbjct: 239 EHKGYPNYTIGQRKGLGIALGQPMFVIAIHPEDNTVVLGTKEELQGKSFFAKEINLMKYA 298 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 + DG + KIR + + D+ + V F ++ + GQ+ VFY + Sbjct: 299 ----KIPDGLEVTAKIRYRNEGKKASLYPEDNRLRVVFHETMDSITPGQSAVFYEGED-- 352 Query: 375 ARVLGGGIISGSK 387 V+GGG+I G + Sbjct: 353 --VVGGGVIEGKR 363 >gi|312129941|ref|YP_003997281.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Leadbetterella byssophila DSM 17132] gi|311906487|gb|ADQ16928.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Leadbetterella byssophila DSM 17132] Length = 368 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 137/377 (36%), Positives = 207/377 (54%), Gaps = 19/377 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDA 76 K RV+VAMSGG+DSS+ A LL GY+V+G+T++ Y S +K++ CC+ + DA Sbjct: 3 KRGRVLVAMSGGIDSSLAAVLLHEQGYEVVGMTMKTWDYASSGGTKKETGCCSLDSINDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + + HY+ D F ++VI F Y G TP PCV CN +K+ LL L Sbjct: 63 RAIAVNLGFPHYILDIRSEFGDSVIDHFTGEYLEGRTPNPCVLCNTHIKWDALLRRADNL 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 + +ATGHY + R G R ++ R D +DQSY L+ +Q+ L PLGD+ Sbjct: 123 NCEFIATGHYAKIRQENG-----RYVISRGKDTTKDQSYVLWGVSQESLSRTLLPLGDLT 177 Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252 K +R++AR+ G D+ +KS+S +ICFV Y +KR G+ + G+ V NGQ+ Sbjct: 178 KAEIREMARQKGFYDLVNKSESYEICFVPDNDYRGFLKRRIEGLEEQVAGGNFVLENGQV 237 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G+H G YTIGQR+GL +A+G P+FV + K ++ V++G E L+ + + + ++N Sbjct: 238 VGKHEGYPFYTIGQRKGLKIALGYPVFVTEIRKETNEVVLGTEEYLKKNGMVVSKLNLQK 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSD 371 + G + KIR F+++ D D + V+F + +A GQA VFY D Sbjct: 298 YASIPEG---GLESLTKIRYKDQGEMAFIRQTDADKIEVEFSQPVSAIAPGQAAVFYEGD 354 Query: 372 SNEARVLGGGIISGSKR 388 V+GGG I S R Sbjct: 355 D----VIGGGWIMKSYR 367 >gi|113474569|ref|YP_720630.1| tRNA-specific 2-thiouridylase MnmA [Trichodesmium erythraeum IMS101] gi|123352667|sp|Q118B7|MNMA_TRIEI RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|110165617|gb|ABG50157.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Trichodesmium erythraeum IMS101] Length = 359 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 146/380 (38%), Positives = 214/380 (56%), Gaps = 37/380 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +++V +SGGVDSS AA+L GY V G+TL L K KG CC+ + + DA +C+ Sbjct: 3 KIIVGLSGGVDSSTAAAILHHQGYQVEGLTLWLM------KGKGQCCS-EGMVDAAYICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 +++ H++ D F+ ++ + Y+AG TPLPC CN+TVKF +L+ R+ LG D Sbjct: 56 QLDIPHHIVDTRNLFQANIVDYLVTGYSAGITPLPCSQCNKTVKFGPMLAYGREKLGIDK 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R D R ++ R +D +DQSYFL+ TQ L FPLG+M K Sbjct: 116 IATGHYARLDY---DSKSDRYLLKRAIDRNKDQSYFLYDLTQYLLAGSVFPLGEMVKSET 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQQG----KYFDVVKRINAGIALEGDIVHLNGQILGRH 256 R +A E GL ADK +SQD+C V+ + D K I +G+IV G++LGRH Sbjct: 173 RRIAAEYGLKTADKPESQDLCLVESSGSMRAFLD--KYITPH---QGEIVDREGRVLGRH 227 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 +G+ +YTIGQR+GLGV+ PL+V+ LD ++VIVG R+S ++ +NW+ Sbjct: 228 DGVHHYTIGQRKGLGVSAPHPLYVIDLDPAMNKVIVGDRDSATKMESTVKLVNWVSIAPP 287 Query: 317 EDAVVDGFKCFVKIRSSQDPV-----PVFV--QRNDDGVYVD--FEKSEVGVASGQACVF 367 ++ + V++R PV P+ V ++ DG V FE++ G+ GQA V+ Sbjct: 288 STSI----RAEVQVRYRSLPVAANIIPLGVNEEKPQDGFRVKLIFEEAVFGITPGQAAVW 343 Query: 368 YTSDSNEARVLGGGIISGSK 387 Y D +LGGGII K Sbjct: 344 YEGDI----LLGGGIIENEK 359 >gi|320536235|ref|ZP_08036280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Treponema phagedenis F0421] gi|320146893|gb|EFW38464.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Treponema phagedenis F0421] Length = 359 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 134/366 (36%), Positives = 202/366 (55%), Gaps = 16/366 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++V +SGGVDS+V A LL G++V GVT+Q+ + + QD+ DAR + Sbjct: 1 MKILVGLSGGVDSAVAAKLLLEQGHEVSGVTMQMISPVGEIIKSQE----QDIADARAIA 56 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +T+ + + D FR ++ FA +Y G TP PC CN+ +KF LL + G D Sbjct: 57 NTLGIDFFTLDLRSAFREEIMNYFAETYKQGLTPNPCFICNKKMKFRRLLDAALERGFDA 116 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + + D R ++ + D ++DQSYFL Q QL + FPLG+ K V Sbjct: 117 IATGHYAQ---IMRDLKTGRYLLLQGSDSKKDQSYFLALLNQFQLAHIMFPLGNYTKPEV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A + DSQDICFV G Y +V+ + EG+ + G+I+G+H G+ Sbjct: 174 RKIAEKAGLISAHRPDSQDICFVPNGDYAKIVEALLPETFTEGNFLDTKGKIIGKHRGLH 233 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +YTIGQRRGL +A GEP++VV D ++ V VG E+L + +N++ + + Sbjct: 234 HYTIGQRRGLALAFGEPVYVVSKDAKTNTVCVGSSENLFASALVAENVNFIAVEKLTEPI 293 Query: 321 VDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 V C VK R Q+ +P + +D + V+F + E VA+GQA V Y + V Sbjct: 294 V----CTVKTRYRQNEIPARLIPITEDSLRVEFLQPERAVAAGQALVCY----KDGAVFA 345 Query: 380 GGIISG 385 GGII+ Sbjct: 346 GGIITA 351 >gi|205814900|sp|Q6MLR7|MNMA_BDEBA RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 360 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 148/369 (40%), Positives = 206/369 (55%), Gaps = 20/369 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDARRV 79 RV+VAMSGGVDSS AALL GY+VIG T+Q+ Y++ + G+CC+ DV DAR V Sbjct: 5 RVLVAMSGGVDSSAAAALLVEQGYEVIGATMQVWDYSTCDIEEGNGTCCSSIDVDDARAV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + YV + E +FR AVI PF +Y G+TPLPCV+CN +KF L+ R+L D Sbjct: 65 ADRLGIPFYVINCEAKFRAAVIDPFLKAYLEGQTPLPCVNCNTYLKFDHLVKKMRELECD 124 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + V DD + I D +DQ+YFLF + + L FP+GDMKK Sbjct: 125 YIATGHYAK---IVYDDKGKASIHTSTDDW-KDQTYFLFTIDPELVPKLLFPVGDMKKPQ 180 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGI--ALEGDIVHL-NGQILGR 255 VR+ + GL A K DSQ ICFV Y + +K + + I + +G I GQ++ Sbjct: 181 VREYSESRGLVTARKKDSQGICFVGNQGYQNFIKDHVKSEILASKKGLIKRFPEGQVMAS 240 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H GI NYT GQ +GLG+ E LFV+ +D + + V VG E ++ E++ + L Sbjct: 241 HEGIHNYTYGQSKGLGMDYHEKLFVIKIDASDNTVWVG-----EEKHLFANEVDVVDPKL 295 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 D + DG VKIR P V + G + F + + V GQA VFY + Sbjct: 296 L-DEIQDGEIMNVKIRYQHKGAPAQVIKTASGFKLKFTEPQRAVTPGQAAVFY----RDR 350 Query: 376 RVLGGGIIS 384 +++GGG I+ Sbjct: 351 QLVGGGWIT 359 >gi|313893420|ref|ZP_07826992.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Veillonella sp. oral taxon 158 str. F0412] gi|313442061|gb|EFR60481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Veillonella sp. oral taxon 158 str. F0412] Length = 353 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 135/362 (37%), Positives = 201/362 (55%), Gaps = 18/362 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + VAMSGGVDSS+ AA+L + GY V G+TL L+ S V DA+++CD Sbjct: 5 IAVAMSGGVDSSLTAAMLLKQGYKVFGITLWLWVSGTPYDE-----VPLAVTDAKKMCDF 59 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + H+V D + F V+ F YA G TP PCV CN+ +KF +L+ +LGA + Sbjct: 60 LGIEHHVIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATHMV 119 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ + + +D +DQSY ++ Q+ L L FPLG K R Sbjct: 120 TGHYAQVNF---NEETGLYELHKGVDPTKDQSYVMYNMNQRILSHLMFPLGGQCKTETRK 176 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA E L +A K DS DICF+ G Y +V G+IV +G++LG+HNG+ NY Sbjct: 177 LAAEYDLPVAKKPDSVDICFLPHGNYQKLVVEEMKAKPKTGNIVTEDGEVLGKHNGLFNY 236 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A PL+V+ + + + VIVGP E L +R+ + N+L D + ++ + Sbjct: 237 TIGQRKGLGIAYKHPLYVIGFNGDRNEVIVGPNERLFTNRMICKFYNFLDDTIHKELKAE 296 Query: 323 GFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 G KIR + +P P + +DD + V FE+ + + GQ+ FY N ++LGG Sbjct: 297 G-----KIRYAANPSPCTARILDDDTMEVIFEEPQRAITPGQSVAFY----NGTQLLGGA 347 Query: 382 II 383 +I Sbjct: 348 VI 349 >gi|284929056|ref|YP_003421578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [cyanobacterium UCYN-A] gi|284809515|gb|ADB95220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [cyanobacterium UCYN-A] Length = 352 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 144/367 (39%), Positives = 209/367 (56%), Gaps = 27/367 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++VV +SGGVDSSV AA L GY+V G+TL L K KG CC+ + + DA +C+ Sbjct: 3 KIVVGLSGGVDSSVAAASLCDQGYEVSGLTLWLM------KGKGQCCS-EGMVDAAHICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 +N+ HY+ D +E F+ +I S Y +G TPLPC CNR+VKF +L +Q L D+ Sbjct: 56 QLNIPHYIVDAKELFKKNIIDYLVSGYKSGITPLPCSQCNRSVKFKPMLDYAQQELDCDL 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R D + + R +D +DQSYFL+ Q L FPLG+ KE Sbjct: 116 IATGHYARIRY---DKETDKYKLLRAIDPNKDQSYFLYDLPQDILAKTIFPLGEQTKEDT 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGI 259 R +A E L A+K +SQD+C ++ Y + + I + GDIV+ G++LG H GI Sbjct: 173 RRMATEFKLRTANKPESQDLCLIES--YGSMASFLEKYIKPQTGDIVNSKGEVLGTHKGI 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 NYTIGQR+GLG++ EPL+V+ L+ +++V+VG R ++++NW+ + + Sbjct: 231 HNYTIGQRKGLGISSSEPLYVLKLNLYNNQVVVGNRTEGFHSSCIIKDVNWI--SISKPD 288 Query: 320 VVDGFKCFVKIRS---SQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + K V+ RS S +PV R + FE+S+ G+ +GQA V Y D Sbjct: 289 ISMNVKVQVRYRSLAVSATIIPVENNRYK----LIFEQSQFGITAGQAAVLYDDDI---- 340 Query: 377 VLGGGII 383 VL GGII Sbjct: 341 VLAGGII 347 >gi|238019350|ref|ZP_04599776.1| hypothetical protein VEIDISOL_01214 [Veillonella dispar ATCC 17748] gi|237864049|gb|EEP65339.1| hypothetical protein VEIDISOL_01214 [Veillonella dispar ATCC 17748] Length = 363 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 137/362 (37%), Positives = 202/362 (55%), Gaps = 18/362 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + VAMSGGVDSS+ AA+L + GY V G+TL L+ S V DA+++CD Sbjct: 15 IAVAMSGGVDSSLTAAMLLKQGYKVFGITLWLWVSGTPYDS-----VPLAVTDAKKMCDF 69 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + H+V D + F + V+ F YA G TP PCV CN+ +KF +L+ +LGA + Sbjct: 70 LGIEHHVIDARDVFYDNVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATHMV 129 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + Y + G + + +D +DQSY ++ Q+ L L FPLG K R Sbjct: 130 TGHYAQVN-YNEETGLYE--LHKGVDPTKDQSYVMYNMNQRILSHLMFPLGGQCKTETRK 186 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA E L +A K DS DICF+ G Y +V G+IV +G++LG+HNG+ NY Sbjct: 187 LAAEYDLPVAKKPDSVDICFLPHGNYQKLVVEEMKDKPKSGNIVTEDGEVLGKHNGLFNY 246 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A PL+V+ + + VIVGP E L +R+ + N+L D + ++ + Sbjct: 247 TIGQRKGLGIAYKHPLYVIGFNGERNEVIVGPNERLFTNRMICKFYNFLDDTIHKELKAE 306 Query: 323 GFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 G KIR + +P P + +DD + V FE+ + + GQ+ FY N ++LGG Sbjct: 307 G-----KIRYAANPSPCTARILDDDTMEVIFEEPQRAITPGQSVAFY----NGTQLLGGA 357 Query: 382 II 383 +I Sbjct: 358 VI 359 >gi|319651666|ref|ZP_08005793.1| TrmU protein [Bacillus sp. 2_A_57_CT2] gi|317396733|gb|EFV77444.1| TrmU protein [Bacillus sp. 2_A_57_CT2] Length = 371 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 149/375 (39%), Positives = 205/375 (54%), Gaps = 23/375 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K+PKD RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MKKDPKDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 NDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY R DG+ + M R +D +DQ+YFL TQ QL + FP+G Sbjct: 118 MSLGADYLATGHYARVEF---RDGEYK--MLRGLDDNKDQTYFLNQLTQDQLEKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 D++K VR+LA++ GL A K DS ICF+ + + + + N A G++ ++G+I+ Sbjct: 173 DIEKSKVRELAKDAGLATAAKKDSTGICFIGERNFKEFLG--NYLPAQPGNMETMDGKIV 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP F + D + + VG E L I + Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGAGEPWFAIGKDLKRNVLYVGQGFHNEMLYSDSIIAVNAS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W+ F+C K R Q V VQ DG V V F++ V GQA VFY Sbjct: 291 WVT----HSEQPQEFECTAKFRYRQADSRVKVQILGDGKVQVIFDEPIRAVTPGQAVVFY 346 Query: 369 TSDSNEARVLGGGII 383 D LGGG I Sbjct: 347 NGD----ECLGGGTI 357 >gi|124026416|ref|YP_001015531.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus str. NATL1A] gi|205816901|sp|A2C457|MNMA_PROM1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|123961484|gb|ABM76267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus str. NATL1A] Length = 404 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 148/383 (38%), Positives = 212/383 (55%), Gaps = 35/383 (9%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D VVV +SGGVDSS+ AALL + G+DV G+TL L K KGSCC+ + DA + Sbjct: 36 DQSVVVGLSGGVDSSLTAALLCKAGWDVEGLTLWLM------KGKGSCCS-DGLVDAAGI 88 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGA 138 CD + + H++ D +E F+ +I Y G TPLPC CN++VKFS++L V Sbjct: 89 CDQLGIKHHIVDSKEIFQKEIINNVLKGYEEGITPLPCSRCNKSVKFSEMLKWVKENKNI 148 Query: 139 DVLATGHYIRSRLY--------VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 + +ATGHY R R + +G +R + R DL +DQSYFL+ Q+ L F Sbjct: 149 EKIATGHYARIRYSNESFNENDLPSNGIKRHKLLRGKDLNKDQSYFLYDLPQEILGRTIF 208 Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLN 249 PLG++ KE R A + L A K +SQD+C + Y + I+ + + G++V + Sbjct: 209 PLGELTKEITRIEALKHSLKTAKKPESQDLCLAEH--YGSMNAFIDKYLPQKKGEVVLKS 266 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 GQI+G HNGI ++TIGQR+GLG+A PL VV +D + +RVIV PRE +++IN Sbjct: 267 GQIIGSHNGIQHFTIGQRKGLGIAWEVPLHVVEIDASLNRVIVAPREDSGKSECIVKDIN 326 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPV-----PVFVQRNDDGVY---VDFEKSEVGVAS 361 W+ +A + K V+IR V P+F ++ Y + FE+ + + Sbjct: 327 WVSI----EAPQEPIKVEVQIRYRSKAVKAKLIPIFDSNKENYCYQCHIHFEEDQFSITP 382 Query: 362 GQACVFYTSDSNEARVLGGGIIS 384 GQA VFY D VLGGG+IS Sbjct: 383 GQAAVFYMGD----YVLGGGLIS 401 >gi|325107944|ref|YP_004269012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Planctomyces brasiliensis DSM 5305] gi|324968212|gb|ADY58990.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Planctomyces brasiliensis DSM 5305] Length = 370 Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 145/380 (38%), Positives = 203/380 (53%), Gaps = 31/380 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKAS-------------KRKGSC 67 RVV+AMSGGVDSS A LL+ GY+VIG+ ++ N S K C Sbjct: 4 RVVLAMSGGVDSSAAAHLLQEQGYEVIGLFMRSGVNEETCSLDDPNALPVINLKAHKQGC 63 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 C+ D DARRV D +++ + ++++ F + FA Y AG TP PCV CN +KF Sbjct: 64 CSASDAADARRVADELDIPFHALNFQDAF-GRIKDYFADEYLAGRTPNPCVQCNNWLKFG 122 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 L +Q+GA +A+GHY R DG+ + R +D +DQSY LF L Sbjct: 123 KLWEFAQQVGATKIASGHYAR---ITEQDGEYH--LERGLDPGKDQSYVLFGIRPDLLPH 177 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 + FP+G +K +R++A E GL ADK DSQ+ICF+ Y V+R +G V+ Sbjct: 178 ILFPVGGFQKGEIREMAGEAGLRTADKKDSQEICFIPDNDYAGFVRRYRGEQETKGQFVN 237 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 G+ LG H G ++TIGQRRGLG+A G P FV+ + + V++G + L + Sbjct: 238 TAGESLGEHRGYEHFTIGQRRGLGMAFGTPHFVLEIRPETCEVVLGSYDELGRTGLRADR 297 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366 +NWL + V D F+C +IR P V+R ++D V V F++ + GVA GQA V Sbjct: 298 MNWLAN------VGDEFRCTAQIRYQHRPAACTVRRLDNDQVEVHFDEPQHGVAPGQAFV 351 Query: 367 FYTSDSNEARVLGGGIISGS 386 Y D RVLGGG I+ S Sbjct: 352 CYDGD----RVLGGGWITES 367 >gi|33861847|ref|NP_893408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|81572901|sp|Q7TTQ1|MNMA_PROMP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|33640215|emb|CAE19750.1| tRNA methyl transferase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 390 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 145/387 (37%), Positives = 219/387 (56%), Gaps = 38/387 (9%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 +K+ K +++V +SGGVDSS+ AALL DG+ V G+TL L K +GSCC+ + + Sbjct: 18 NKSKKQQKIIVGLSGGVDSSLSAALLIEDGWKVEGLTLWLM------KGEGSCCS-EGLV 70 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VT 133 DA +C+ + ++H + D F V+ Y +G TPLPC CN+ VKF ++L+ V Sbjct: 71 DAAGLCEDLGINHNILDSRVIFEREVVKKTTEGYESGFTPLPCSMCNKNVKFEEMLNFVI 130 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRR-------IMCRPMDLERDQSYFLFATTQQQLC 186 +Q +ATGHY R + ++ K ++ R D +DQSYFL++ +Q+ L Sbjct: 131 KQKEFTYIATGHYARVQKVSCENIKNYENFQFKDFLLLRGADRNKDQSYFLYSLSQEVLS 190 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDI 245 L PLG++KKE R A +GL A K +SQD+C V+ Y + K I+ I EG+I Sbjct: 191 RLILPLGNLKKEETRKEALRLGLRTAKKPESQDLCLVEH--YGSMQKFIDNHIEPKEGEI 248 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 H+NG+ILG HNGI ++TIGQR+GLG+A EPL+V LDK + V V ++ L + Sbjct: 249 KHINGEILGTHNGIQHFTIGQRKGLGIAWPEPLYVESLDKQKNIVYVANKKDLFKREAII 308 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDP-----VPVFVQRNDDGVY----VDFEKSE 356 +EINW+ +A + + +IR +P VPV +N+D + + FE ++ Sbjct: 309 KEINWVSI----EAPLKEIEVEAQIRYRSEPVKGILVPV---KNEDNLTKKFKLIFEDNQ 361 Query: 357 VGVASGQACVFYTSDSNEARVLGGGII 383 + GQA VFY + +LGGG+I Sbjct: 362 SSITPGQAAVFYKDEI----LLGGGLI 384 >gi|300855514|ref|YP_003780498.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium ljungdahlii DSM 13528] gi|300435629|gb|ADK15396.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium ljungdahlii DSM 13528] Length = 358 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 136/364 (37%), Positives = 215/364 (59%), Gaps = 15/364 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGSCCAGQDVYDARRVC 80 +VVV MSGGVDSSV A LLK GY+VIGVT+Q++ K + +G CC+ V DAR V Sbjct: 4 KVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMQVWQDDKYYEGMEGGCCSLSAVDDARLVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + +YV ++ F+ VI F Y G TP PCV CN+ +KF +LL LGAD Sbjct: 64 YNLGIPYYVMNFRNEFKKCVIDYFIDEYTKGRTPNPCVACNKYIKFDELLKRAMDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY V D R ++ + D ++DQ+Y L+ TQ QL P G KKE + Sbjct: 124 VATGHYATVEK-VND----RYVLKKSKDSKKDQTYALYNLTQFQLEHTLMPCGIYKKEQI 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+++GL + +K DS++ICF+ + +KR+ EG+ V +G++LG+H GI Sbjct: 179 REIAKKIGLAVHNKKDSEEICFIPDNDHGSYIKRVAPNKVKEGNFVDKSGKVLGKHGGIT 238 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQR+GLG+A G P++V+ ++ + V++G + + +++ +++N++ FE + Sbjct: 239 YYTIGQRKGLGIAFGIPMYVIDINPLKNEVVLGGEKDIFKNKLIAKDLNFMP---FE-KL 294 Query: 321 VDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + KIR S P + ++D V V+F++++ + GQ+ VFY D ++G Sbjct: 295 DKPMRIQAKIRYSAKPADALISAIDEDRVKVEFDENQRAITKGQSVVFYDGDI----LVG 350 Query: 380 GGII 383 GG+I Sbjct: 351 GGVI 354 >gi|237785842|ref|YP_002906547.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium kroppenstedtii DSM 44385] gi|259495826|sp|C4LJJ9|MNMA_CORK4 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|237758754|gb|ACR18004.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Corynebacterium kroppenstedtii DSM 44385] Length = 372 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 150/369 (40%), Positives = 203/369 (55%), Gaps = 23/369 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDSSV AA L +G++VIGV L L S + R GS CC+ +D DARR Sbjct: 1 MRVMAAMSGGVDSSVAAARLVAEGHEVIGVHLALA-STPTTLRVGSRGCCSLEDSGDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ +RFR V+ PF +SY GETP PC+ CN +KF LL LG Sbjct: 60 VADALGIPFYVWDFSDRFREDVVDPFINSYEMGETPNPCLRCNEKIKFQALLDRGIALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R + DG+ RR +D +DQSY L +QL FPLGD +K Sbjct: 120 DAVATGHYARLK-----DGELRRA----IDDNKDQSYVLGVLNDEQLAHCLFPLGDTRKP 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R A GL A K DS DICF+ G + + G+ GD+ +G ++G H+G Sbjct: 171 DIRKEAEAAGLVTASKPDSHDICFIPDGNTKAFLGN-HIGVR-SGDLKDQDGNVIGHHDG 228 Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 I +TIGQR+GLG+ G+P +V +D ++ V VG R+ L V R+Y + L + Sbjct: 229 IYGFTIGQRKGLGLPGPAPDGKPRYVTDIDADTGTVTVGTRDDLRVGRLYADRLIRLDE- 287 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 E + +C V++R+ V V +D +D GVA GQA V Y D + Sbjct: 288 -HEGSTQ---ECQVQVRAHGGVVDATVTIDDGVATIDLHSPLTGVARGQAAVIYRPDPDG 343 Query: 375 ARVLGGGII 383 VLG G I Sbjct: 344 DIVLGSGTI 352 >gi|302871531|ref|YP_003840167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor obsidiansis OB47] gi|302574390|gb|ADL42181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor obsidiansis OB47] Length = 360 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 136/368 (36%), Positives = 209/368 (56%), Gaps = 15/368 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDARRV 79 +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ + + R+ SCC+ V DARRV Sbjct: 4 KVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETEDELIREKSCCSLTAVDDARRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +++ +YVF+ +E F+ VI F Y G TP PC+ CNR +KF L LG D Sbjct: 64 AHILDIPYYVFNMKEDFKKEVINYFIDEYIKGRTPNPCIMCNRKIKFELFLKRAMVLGMD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + D+ R ++ R E+DQ+Y L+ TQ+ L FPLG K+ Sbjct: 124 YIATGHY---AIIEYDNTLCRYLLKRSKAREKDQTYVLYNMTQEMLSKTIFPLGRFSKDE 180 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA + L +A K DSQ+ICF+ Y +++ GI EG V G ILG+ Sbjct: 181 VRKLAEKFKLPVAKKPDSQEICFIPDNDYGSFIEK-ETGINDEGVYVDTEGNILGKSKAY 239 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 NYTIGQR+GLG++ G+ ++VV + ++V++G + + + ++N++ LF D Sbjct: 240 YNYTIGQRKGLGISTGKRMYVVDIKPEENKVVLGEEDKVFSDGLIASDLNFI---LF-DK 295 Query: 320 VVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + KIR ++++ + ++ V V F + + + GQ+ VFY+ D V+ Sbjct: 296 LESELEVTAKIRYTAKETKTKVIPVQNNKVLVKFYEKQRAITPGQSVVFYSGDI----VV 351 Query: 379 GGGIISGS 386 GGGII + Sbjct: 352 GGGIIEKA 359 >gi|222529697|ref|YP_002573579.1| tRNA-specific 2-thiouridylase MnmA [Caldicellulosiruptor bescii DSM 6725] gi|222456544|gb|ACM60806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor bescii DSM 6725] Length = 360 Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 136/368 (36%), Positives = 208/368 (56%), Gaps = 15/368 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDARRV 79 +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ + + R+ SCC+ V DARRV Sbjct: 4 KVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETEDELIREKSCCSLTAVDDARRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +++ +YVF+ ++ F+ VI F Y G TP PC+ CNR +KF L LG D Sbjct: 64 AHILDIPYYVFNMKDDFKKEVINYFVDEYIKGRTPNPCIMCNRKIKFELFLKKAMVLGMD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + D R I+ R E+DQ+Y L+ TQ+ L FPLG K+ Sbjct: 124 YIATGHY---AIIEYDKSLYRYILKRSKAREKDQTYVLYNMTQEMLSKTIFPLGRFSKDE 180 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA + L +A K DSQ+ICF+ Y +++ GI EG V G ILG+ Sbjct: 181 VRKLAEKFKLPVARKPDSQEICFIPDNDYGSFIEK-ETGINDEGVYVDTEGNILGKSKAY 239 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 NYTIGQR+GLG++ G+ ++VV + ++V++G + + + ++N++ LF D Sbjct: 240 YNYTIGQRKGLGISTGKRMYVVDIKPEENKVVLGEEDKVFSDGLIASDLNFI---LF-DK 295 Query: 320 VVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + KIR ++++ + ++ V V F + + + GQ+ VFY+ D V+ Sbjct: 296 LESELEVTAKIRYTAKEAKAKVIPVQNNKVLVKFYEKQRAITPGQSVVFYSGDI----VV 351 Query: 379 GGGIISGS 386 GGGII + Sbjct: 352 GGGIIEKA 359 >gi|240169595|ref|ZP_04748254.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium kansasii ATCC 12478] Length = 363 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 150/375 (40%), Positives = 204/375 (54%), Gaps = 24/375 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+V+ AMSGGVDSSV AA + G++V+GV L L ++ ++ R GS CC+ +D DARR Sbjct: 1 MKVLAAMSGGVDSSVAAARMVDAGHEVVGVHLAL-STAPSTLRTGSRGCCSKEDASDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ E+F VI F SSYA GETP PCV CN+ +KFS L + LG Sbjct: 60 VADVLGIPFYVWDFAEKFNEDVIDDFVSSYARGETPNPCVRCNQRIKFSALSARALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R DG+ RR +D ++DQSY L T +QL FP+GD K Sbjct: 120 DAVATGHYARL-----SDGRLRRA----VDRDKDQSYVLAVLTARQLRHALFPIGDTPKP 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257 +R A GL +ADK DS DICF+ G D + A I + G +V +G +L H+ Sbjct: 171 QIRAEAARRGLAVADKPDSHDICFIPSG---DTRAFLGARIGVRRGLVVDADGAVLATHD 227 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+ +TIGQR+GLG+ G P +V +D ++ V VG L+VH + R + Sbjct: 228 GVHEFTIGQRKGLGIPGPGPDGRPRYVTAIDAETATVRVGDVSDLDVHALTGRAPVFTA- 286 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 G VD C V++R+ + V + D + V GVA GQ V Y D Sbjct: 287 GAAPSGPVD---CAVQVRAHGETVAATAELVGDELLVRLHAPLRGVARGQTAVLYRPDPG 343 Query: 374 EARVLGGGIISGSKR 388 VLG I+GS R Sbjct: 344 GDEVLGSATIAGSHR 358 >gi|188997646|ref|YP_001931897.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfurihydrogenibium sp. YO3AOP1] gi|188932713|gb|ACD67343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfurihydrogenibium sp. YO3AOP1] Length = 352 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 135/366 (36%), Positives = 211/366 (57%), Gaps = 17/366 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++VV +SGGVDSS A LLK+ GY+V+G++L+ + CC+ +D+ DA++V + Sbjct: 3 KIVVGLSGGVDSSTAAFLLKKQGYEVVGISLKFTDIDSCELDTQVCCSDKDILDAKKVAE 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + HYV ++++ F VI F Y +G TP PC CN+ VK + LG D L Sbjct: 63 FLEIPHYVINWKDIFEKKVINYFIEVYQSGLTPNPCSICNKEVKTGLFAKYIKSLGFDYL 122 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHYIR+ + DG +++ R +D +DQSYF+ ++ + L FPLG++ KE VR Sbjct: 123 ATGHYIRTDI---QDG--IKVLKRGIDKNKDQSYFMALVEKEVVDTLTFPLGNLTKEEVR 177 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A+E + ++ K +S +ICF + + K +N EG+IVH++G++LGRH GI + Sbjct: 178 KIAQENRIPVSQKEESFEICFTKGKSPEEYFKTLNIKTN-EGEIVHISGKVLGRHKGIES 236 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQRRGL +A EPL+V+ D ++++VG ++ L +++ ++ N+L FE Sbjct: 237 YTIGQRRGLNIAWKEPLYVIEKDALKNKIVVGEKDYLLTNKVVAKDFNFLVP--FEKWK- 293 Query: 322 DGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 K V+ R Q P+ D + + V FE+ A GQ Y D+ +LGG Sbjct: 294 ---KIEVQGRYKQKPIKAKEYHLDRENLTVIFEEKVPKFAPGQILAVYDGDT----LLGG 346 Query: 381 GIISGS 386 GIIS S Sbjct: 347 GIISRS 352 >gi|86604778|ref|YP_473541.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. JA-3-3Ab] gi|123508144|sp|Q2JY34|MNMA_SYNJA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|86553320|gb|ABC98278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. JA-3-3Ab] Length = 370 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 201/363 (55%), Gaps = 19/363 (5%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 L + ++ +P R+V A+SGGVDSS VAA+L GY V GVTL L + KG CC Sbjct: 8 LVAPEIAGSPSRPRIVAALSGGVDSSTVAAILHEQGYAVEGVTLWLM------RGKGQCC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 + DA +C+ + + H++ D E F+ ++ + YA G TPLPC CN+ VKF Sbjct: 62 T-DGLVDAAAICEQLGIPHHIVDSRELFQANIVDYLVAGYADGITPLPCSQCNKLVKFGP 120 Query: 129 LLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 LL+ R+ LG +ATGHY R R + R + R +D ++DQSYFL+ +Q+ L Sbjct: 121 LLTYARETLGISQIATGHYARVRF---NSELGRYQLLRAVDRQKDQSYFLYDLSQEHLAH 177 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIV 246 FPLG+ K R +A GL A+K +SQD+C ++ Y + ++ + G+IV Sbjct: 178 SLFPLGNYTKAQTRQIAARYGLVTANKPESQDLCLIE--TYGSMRNFLDQHLGQRPGEIV 235 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 G++LG H GI +YT+GQR+GLG+A PL+VV +D +RV+VG RE ++R Sbjct: 236 DTQGRVLGSHQGIHHYTVGQRKGLGIASSRPLYVVRIDAAMNRVVVGEREEATQAEAWVR 295 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQAC 365 ++NW+ A + V++R VP + + + V + F + + GV GQA Sbjct: 296 QVNWVST----PAPDEPLAVEVQVRYRTPAVPATLIPESPERVKLQFAEPQFGVTPGQAA 351 Query: 366 VFY 368 V+Y Sbjct: 352 VWY 354 >gi|315092805|gb|EFT64781.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL060PA1] Length = 360 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 148/370 (40%), Positives = 208/370 (56%), Gaps = 25/370 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84 MSGGVDS+V AA L G+DV GV L L + + S R+GS CC+ +D +DARR D + Sbjct: 1 MSGGVDSAVAAARLVEAGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFDARRAADRLG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG D +ATG Sbjct: 60 IPFYVWDFSDRFVVEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATG 119 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY R+++ DG + + R +D +DQSY L Q QL FPLG+ K +VR A Sbjct: 120 HYARTKVI---DGVTK--LYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKVNVRQEA 174 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHNGIINYT 263 +GL +ADK DS DICF+ G D ++ I + +G+I +G ++G HNG ++T Sbjct: 175 AALGLSVADKPDSNDICFIPDG---DTPGWLSDKIGSADGEIRDESGALVGHHNGYHHFT 231 Query: 264 IGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 IGQRRGL + + G+P +V+ ++ ++ V+VG E L VH I W Sbjct: 232 IGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWC-----SGE 286 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 V+ + ++R+ DPVP + GV V+ E S GVA GQA VFY D V+G Sbjct: 287 PVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAVVFYDGD----LVVG 342 Query: 380 GGIISGSKRS 389 I G+ R+ Sbjct: 343 SATICGTDRA 352 >gi|296119548|ref|ZP_06838106.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium ammoniagenes DSM 20306] gi|295967431|gb|EFG80698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium ammoniagenes DSM 20306] Length = 361 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 149/374 (39%), Positives = 203/374 (54%), Gaps = 28/374 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRV 79 MRV+VAMSGGVDSSV AA G++V+GV L L+ + ++ K CC+ +D DARR+ Sbjct: 1 MRVLVAMSGGVDSSVAAARAVEAGHEVVGVHLALHKDAQQTREKARGCCSLEDSADARRI 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + + YV+D+ E F+ AVI F SYA GETP PC+ CN +KF+ LL LG D Sbjct: 61 CDKLGIPFYVWDFSEEFKEAVITDFVDSYARGETPNPCLRCNEKIKFAALLRKGMALGFD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + DG R R +D +DQSY L T ++L FP+GD K Sbjct: 121 AVATGHYAT----LDKDGYMR----RSLDENKDQSYVLGVITAEELSYCYFPIGDTPKPQ 172 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNG 258 +R+ A+ G A K DS DICF+ G + + A I + G IV +G L H+G Sbjct: 173 IREEAKRHGFSTASKPDSYDICFIPDG---NTQAFLGARIGMRPGMIVDQDGTELREHDG 229 Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 NYTIGQR+GL + A G P +V +D + V VG RE+L+V RI + +L Sbjct: 230 AWNYTIGQRKGLDIKAPAADGRPRYVTGIDAQTGTVTVGSREALKVTRISADRLKYL--- 286 Query: 315 LFEDAVVDG-FKCFVKIRSSQDPVPVF--VQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 +DG F C V++R+ V V R+ D + + + GVA GQA V Y Sbjct: 287 ---HPAMDGEFDCDVQVRAHGSVVSCHAEVDRDADAMILTLNEPLSGVAPGQAAVLYFPS 343 Query: 372 SNEAR--VLGGGII 383 +E V+G G I Sbjct: 344 PDELGDIVIGSGTI 357 >gi|257466420|ref|ZP_05630731.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|315917577|ref|ZP_07913817.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|313691452|gb|EFS28287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium gonidiaformans ATCC 25563] Length = 350 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 144/381 (37%), Positives = 212/381 (55%), Gaps = 40/381 (10%) Query: 11 SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70 +++ + K +RV VA+SGGVDSS VA LLK+ GYD+ GVT++ C Sbjct: 3 NMEYREENKKVRVGVALSGGVDSSTVAYLLKKQGYDIFGVTMK-------------TCHA 49 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 +D DA++VC+ + + HYV D E F V+ F Y G+TP PC+ CNR +KF LL Sbjct: 50 EDA-DAKKVCEDLGIDHYVLDLTEPFSEKVMDYFVEEYMRGKTPNPCMVCNRHIKFGKLL 108 Query: 131 SVTRQLGADVLATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 GA +ATGHY + L VGDDG +DQ YFL +++L Sbjct: 109 DFILGQGAQYMATGHYTKLVDGHLSVGDDGG------------KDQVYFLSQVPKEKLKK 156 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIV 246 + FP+G+++K VR+LA+E+G+ + K DSQ+ICFV+ GK + ++++ + +G+IV Sbjct: 157 IIFPVGELEKTQVRELAKELGVRVYAKKDSQEICFVEDGKLKEFLIEKTKGKVYNKGNIV 216 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 NG+ILG+HNG+ YTIGQR+GLG++ PL+VV L+ + +IVG E L ++ Sbjct: 217 DKNGKILGKHNGLAFYTIGQRKGLGISSESPLYVVELNSERNEIIVGTNEDLMREQLTAE 276 Query: 307 EIN-WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQA 364 + N +L D L E + C+ K RS ++ D V F ++V V GQ Sbjct: 277 QCNLFLVDKLEE---LHNMNCYAKTRSRDTLHACRLEVIGDEVIAHFIDNKVRAVTPGQG 333 Query: 365 CVFYTSDSNE-ARVLGGGIIS 384 VFY NE +V+ GG I Sbjct: 334 VVFY----NELGQVIAGGFIK 350 >gi|226365929|ref|YP_002783712.1| tRNA-specific 2-thiouridylase MnmA [Rhodococcus opacus B4] gi|254811458|sp|C1B1S2|MNMA_RHOOB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|226244419|dbj|BAH54767.1| putative tRNA uridine-sulfurtransferase [Rhodococcus opacus B4] Length = 364 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 147/374 (39%), Positives = 206/374 (55%), Gaps = 25/374 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV+GV L L ++ + R GS CC+ +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVAAGHDVVGVHLAL-SAEPGTLRTGSRGCCSKEDAGDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ +RF+ VI F +SYAAGETP PC+ CN +KF+ L LG Sbjct: 60 AADVLGIPFYVWDFADRFKEDVIDDFVASYAAGETPNPCLRCNEKIKFAALADRAIALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY ++L G ++ R +D ++DQSY L T +QL FP+GD K+ Sbjct: 120 DAVATGHY--AQLENG-------VLRRAVDADKDQSYVLGVLTAEQLSRAMFPVGDTPKD 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLN-GQILGRH 256 +R+ A E GL +A+K DS DICF+ G D + A I + G +V + G++L H Sbjct: 171 RIREEAAERGLAVANKPDSHDICFIPSG---DTRAFLGAHIGVRPGSVVDADSGEVLAEH 227 Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G+ +TIGQR+GLGV A G+P +V ++ + V VG LEVH I W Sbjct: 228 EGVHGFTIGQRKGLGVQGPAADGQPRYVTSIEPETGTVRVGSARDLEVHAITADRAVWTS 287 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 V +C V++R+ + D G+ + + GVA GQA V Y +D Sbjct: 288 GRAPSGPV----ECTVQVRAHGGLAEAVAEAVDGGIRISLREPLTGVAKGQAAVLYRTDP 343 Query: 373 NEARVLGGGIISGS 386 VLG G ISG+ Sbjct: 344 AGDIVLGSGTISGT 357 >gi|312127260|ref|YP_003992134.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor hydrothermalis 108] gi|311777279|gb|ADQ06765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor hydrothermalis 108] Length = 360 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 134/368 (36%), Positives = 207/368 (56%), Gaps = 15/368 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDARRV 79 +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ S + SCC+ V DARRV Sbjct: 4 KVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQSGCGEELITGKSCCSLYAVDDARRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + +++ +YVF+ ++ F+ VI F Y G TP PC+ CNR +KF L +G D Sbjct: 64 ANILDIPYYVFNMKDDFKKMVIDYFVDEYIKGRTPNPCIMCNRKIKFEFFLKKAITIGMD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + D+ R ++ R E+DQ+Y L+ TQ+ L FPLG K+ Sbjct: 124 YIATGHY---AIVEYDNSLNRYLLKRSKAKEKDQTYVLYNMTQEMLSKTLFPLGRFSKDE 180 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA + L +A+K DSQ+ICF+ Y +++ GI +G V G ILGR Sbjct: 181 VRRLAEKFKLPVANKPDSQEICFIPDNNYGKFIEK-ETGIKEDGIYVDTEGNILGRSKTY 239 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 NYTIGQR+GLG++ G+ ++VV + ++VI+G + + + ++N++ D Sbjct: 240 YNYTIGQRKGLGISTGKRMYVVAIKPEENKVILGEEDKIYADNLVATDLNFIPF----DK 295 Query: 320 VVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + KIR ++++ + D+ V V F + + + GQ+ VFY+ D V+ Sbjct: 296 LESELEVTAKIRYTAKEAKARIIPIEDNKVLVKFYEKQRAITPGQSVVFYSGDI----VV 351 Query: 379 GGGIISGS 386 GGGII + Sbjct: 352 GGGIIEKA 359 >gi|313837818|gb|EFS75532.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL037PA2] gi|314927301|gb|EFS91132.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL044PA1] Length = 360 Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 147/375 (39%), Positives = 207/375 (55%), Gaps = 25/375 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84 MSGG+DS+V AA L G+DV GV L L + + S R+GS CC+ +D +DARR D + Sbjct: 1 MSGGIDSAVAAARLVEAGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFDARRAADRLG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG D +ATG Sbjct: 60 IPFYVWDFSDRFAAEVIDPFIAEYQAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATG 119 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY ++++ DG + + R +D +DQSY L Q QL FPLG+ K VR A Sbjct: 120 HYAQAKVI---DGVTK--LYRSVDPGKDQSYVLAVLDQDQLAHSLFPLGNSLKTDVRQEA 174 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHNGIINYT 263 +GL +ADK DS DICF+ G D ++ I + +G+I +G ++GRHNG +T Sbjct: 175 AALGLSVADKPDSNDICFIPDG---DTPGWLSEKIGSADGEIRDESGALVGRHNGYHRFT 231 Query: 264 IGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 IGQRRGL + + G+P +V+ ++ ++ V+VG E L V+ I W Sbjct: 232 IGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVYHIEAIRPVWC-----SGE 286 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 D + V++R+ DPVP + GV V+ E GVA GQA VFY D V+G Sbjct: 287 PADTWHGQVQVRAHGDPVPATISTVPSGVSVELEDPLRGVAPGQAAVFYDGD----LVVG 342 Query: 380 GGIISGSKRSDAVEE 394 I G+ R+ E Sbjct: 343 SATICGTDRAGTTAE 357 >gi|205822033|sp|A4X484|MNMA_SALTO RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 360 Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 148/373 (39%), Positives = 205/373 (54%), Gaps = 26/373 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 +RV+ AMSGGVDS+V AA G+DV GV L L + + + R G+ CC +D DARR Sbjct: 4 VRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLALARNPQ-TYRTGARGCCTLEDSRDARR 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D +++ YV+D +RF+ V+ F + YAAG TP PC+ CN +KF+ +L LG Sbjct: 63 AADVLSIPFYVWDMADRFQADVVDDFVAEYAAGRTPNPCLRCNEKIKFAAVLDRAVALGF 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGH+ R +G DG ++ R +DL +DQSY L T++QL FPLGD K Sbjct: 123 DAVVTGHHAR----LGADG----LLRRSVDLAKDQSYVLGVLTREQLSRSMFPLGDSTKT 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR---INAGIALEGDIVHLNGQILGR 255 VR A GL +ADK DS DICFV G + R G ++GD G+++GR Sbjct: 175 QVRAEATRRGLAVADKPDSHDICFVADGDTRGFLARRLGTTPGDVVDGD----TGEVVGR 230 Query: 256 HNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 H G YT+GQRRGL + G P +V+ + ++ V VGP E+L V ++ R W+ Sbjct: 231 HTGAYAYTVGQRRGLHLDRPAPDGRPRYVLSITPKTNTVTVGPAEALAVSQVQARRPVWI 290 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 G D V +C V++R+ D VP V DDG+ + + GVA+GQA V Y D Sbjct: 291 GGPRPADPV----ECEVQLRAHGDVVPATVAVTDDGLRAELHQPLRGVAAGQAIVAYRPD 346 Query: 372 SNEARVLGGGIIS 384 VLG I+ Sbjct: 347 PAGDIVLGSATIA 359 >gi|257458053|ref|ZP_05623212.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Treponema vincentii ATCC 35580] gi|257444766|gb|EEV19850.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Treponema vincentii ATCC 35580] Length = 358 Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 139/364 (38%), Positives = 199/364 (54%), Gaps = 17/364 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ V +SGGVDS+VVA LL G++V GVTL++ N + ++ S + + +A + Sbjct: 1 MKIAVGLSGGVDSTVVAKLLMEQGHEVCGVTLRVLNEKNPVAKEQS---ERIIGEAAQAA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + H V+D+ F+ +I F SY GETP PC CN+ +KF LL Q G D Sbjct: 58 RILGIPHRVYDFRAEFQTHIIDYFIQSYCNGETPNPCYICNKQIKFGLLLERALQEGCDA 117 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + V + R ++ R +D ++DQSYFL +Q+QL FPL ++ K V Sbjct: 118 VATGHYAK----VFQESSGRYVLERGVDAQKDQSYFLALLSQEQLSRTLFPLAELTKPEV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A KSDSQDICFV G Y V++ +GD + +NG +G H G+ Sbjct: 174 RLIAEKAGLVNAHKSDSQDICFVPDGDYTAVIEAFAPDAFPQGDFIDMNGIKVGTHRGLH 233 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQRRGL + G P++VV + V V P L ++R++NW+ + E Sbjct: 234 RYTIGQRRGLALPFGYPIYVVEKSAEHNTVTVAPENGLFAAACFVRDVNWIAEIPNEP-- 291 Query: 321 VDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 F VK R Q ++ D+ V + F + E VA GQA VFY +RVLG Sbjct: 292 ---FYAEVKTRYRQQLKKARIEPIGDNRVRIVFTEPERAVARGQAAVFYRG----SRVLG 344 Query: 380 GGII 383 GGII Sbjct: 345 GGII 348 >gi|158338655|ref|YP_001519832.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acaryochloris marina MBIC11017] gi|205810972|sp|B0CE39|MNMA_ACAM1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|158308896|gb|ABW30513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acaryochloris marina MBIC11017] Length = 355 Score = 236 bits (602), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 141/371 (38%), Positives = 209/371 (56%), Gaps = 27/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV AA LK GY+VIG+TL L KG CC+ + DA ++C+ Sbjct: 3 KVVVGLSGGVDSSVAAASLKEKGYEVIGLTLWLMQG------KGQCCS-DGLVDAAQLCE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140 +++ H+V D + F N +I Y G TPLPC CN+TVKF +L+ R +L D Sbjct: 56 DLDIPHHVVDSRDLFSNNIIDYLVEGYQQGITPLPCSQCNKTVKFGPMLNYARHELDTDT 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY +R+ + KR +++ R +D +DQSYFL+ Q L FPLGD K Sbjct: 116 IATGHY--ARIAYSEKEKRYQLL-RAVDRNKDQSYFLYDLDQDLLSGTVFPLGDHTKTET 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGI 259 R +A ++ L A+K +SQD+C ++ + + ++ I G+IV G ILG H G+ Sbjct: 173 RRMATQLDLHTAEKPESQDLCLIE--AHGSMQTFLDQYIETHPGEIVDQEGNILGHHQGV 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 ++TIGQRRG+GVA PL+VV LD +RVIVG RE+ ++ +NW+ ++ Sbjct: 231 HHFTIGQRRGIGVAAPHPLYVVDLDPGKNRVIVGDRETALKTECMVKRVNWVSIAPPQNP 290 Query: 320 VVDGFKCFVKIRSSQDP-----VPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 + V++R P +P+ + V + FE + G+A GQA V+Y ++ Sbjct: 291 I----HAEVQVRYRSKPTGVTIIPLDAEAPGGRVKLVFEDPQFGIAPGQAAVWY----DQ 342 Query: 375 ARVLGGGIISG 385 +LGGGII Sbjct: 343 EILLGGGIIEA 353 >gi|145593765|ref|YP_001158062.1| tRNA-specific 2-thiouridylase MnmA [Salinispora tropica CNB-440] gi|145303102|gb|ABP53684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salinispora tropica CNB-440] Length = 394 Score = 236 bits (601), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 148/373 (39%), Positives = 205/373 (54%), Gaps = 26/373 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 +RV+ AMSGGVDS+V AA G+DV GV L L + + + R G+ CC +D DARR Sbjct: 38 VRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLALARNPQ-TYRTGARGCCTLEDSRDARR 96 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D +++ YV+D +RF+ V+ F + YAAG TP PC+ CN +KF+ +L LG Sbjct: 97 AADVLSIPFYVWDMADRFQADVVDDFVAEYAAGRTPNPCLRCNEKIKFAAVLDRAVALGF 156 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGH+ R +G DG ++ R +DL +DQSY L T++QL FPLGD K Sbjct: 157 DAVVTGHHAR----LGADG----LLRRSVDLAKDQSYVLGVLTREQLSRSMFPLGDSTKT 208 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR---INAGIALEGDIVHLNGQILGR 255 VR A GL +ADK DS DICFV G + R G ++GD G+++GR Sbjct: 209 QVRAEATRRGLAVADKPDSHDICFVADGDTRGFLARRLGTTPGDVVDGD----TGEVVGR 264 Query: 256 HNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 H G YT+GQRRGL + G P +V+ + ++ V VGP E+L V ++ R W+ Sbjct: 265 HTGAYAYTVGQRRGLHLDRPAPDGRPRYVLSITPKTNTVTVGPAEALAVSQVQARRPVWI 324 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 G D V +C V++R+ D VP V DDG+ + + GVA+GQA V Y D Sbjct: 325 GGPRPADPV----ECEVQLRAHGDVVPATVAVTDDGLRAELHQPLRGVAAGQAIVAYRPD 380 Query: 372 SNEARVLGGGIIS 384 VLG I+ Sbjct: 381 PAGDIVLGSATIA 393 >gi|205821882|sp|A0QJE5|MNMA_MYCA1 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 358 Score = 236 bits (601), Expect = 7e-60, Method: Compositional matrix adjust. Identities = 144/375 (38%), Positives = 205/375 (54%), Gaps = 24/375 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDSSV AA + G+DV+GV L L ++ + R GS CC+ +D DARR Sbjct: 1 MRVLAAMSGGVDSSVAAARMVDAGHDVVGVHLAL-STAPGTLRTGSRGCCSKEDASDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ E+F+ VI F S+YA GETP PCV CN+ +KFS L + LG Sbjct: 60 VADVLGIPFYVWDFAEKFQADVIDEFVSAYARGETPNPCVTCNQKIKFSALSAKAVALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R G R R R +D ++DQSY L + +QL FP+GD K Sbjct: 120 DAVATGHYARL------SGGRLR---RAVDKDKDQSYVLAVLSAEQLRHAAFPIGDTPKP 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHN 257 +R+ A GL +A+K DS DICF+ G + +RI G +V+ +G +L H+ Sbjct: 171 QIREEAARRGLAVAEKPDSHDICFIPSGNTRAFLGERIG---VRRGAVVNADGTVLAEHD 227 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+ +TIGQR+GLG+A G P +V +D +++ V VG L+V + R + + Sbjct: 228 GVHGFTIGQRKGLGIAGPGPDGRPRYVTAIDADTATVRVGEAADLDVREMLGRAVVFTSG 287 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 A F+C V++R+ + + D + V GVA GQ Y D + Sbjct: 288 ----TAPSGPFECAVQVRAHGETADAVAELVGDELVVRLRAPLRGVAPGQTLALYRHDPD 343 Query: 374 EARVLGGGIISGSKR 388 VLG I+G+ R Sbjct: 344 GDEVLGSATIAGTSR 358 >gi|254776291|ref|ZP_05217807.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium avium subsp. avium ATCC 25291] Length = 358 Score = 235 bits (600), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 144/375 (38%), Positives = 205/375 (54%), Gaps = 24/375 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDSSV AA + G+DV+GV L L ++ + R GS CC+ +D DARR Sbjct: 1 MRVLAAMSGGVDSSVAAARMVDAGHDVVGVHLAL-STAPGTLRTGSRGCCSKEDASDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ E+F+ VI F S+YA GETP PCV CN+ +KFS L + LG Sbjct: 60 VADVLGIPFYVWDFAEKFQADVIDAFVSAYARGETPNPCVTCNQKIKFSALSAKAVALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R G R R R +D ++DQSY L + +QL FP+GD K Sbjct: 120 DAVATGHYARL------SGGRLR---RAVDKDKDQSYVLAVLSAEQLRHAAFPIGDTPKP 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHN 257 +R+ A GL +A+K DS DICF+ G + +RI G +V+ +G +L H+ Sbjct: 171 QIREEAARRGLAVAEKPDSHDICFIPSGNTRAFLGERIG---VRRGAVVNADGTVLAEHD 227 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+ +TIGQR+GLG+A G P +V +D +++ V VG L+V + R + + Sbjct: 228 GVHGFTIGQRKGLGIAGPGPDGRPRYVTAIDADTATVRVGEAADLDVREMLGRAVVFTSG 287 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 A F+C V++R+ + + D + V GVA GQ Y D + Sbjct: 288 ----TAPSGPFECAVQVRAHGETADAVAELVGDELVVRLRAPLRGVAPGQTLALYRRDPD 343 Query: 374 EARVLGGGIISGSKR 388 VLG I+G+ R Sbjct: 344 GDEVLGSATIAGTSR 358 >gi|312135463|ref|YP_004002801.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor owensensis OL] gi|311775514|gb|ADQ05001.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor owensensis OL] Length = 360 Score = 235 bits (600), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 135/368 (36%), Positives = 210/368 (57%), Gaps = 15/368 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDARRV 79 +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ + + R+ SCC+ V DARRV Sbjct: 4 KVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETEDELIREKSCCSLTAVDDARRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +++ +YVF+ ++ F+ VI F Y G TP PC+ CNR +KF L LG D Sbjct: 64 AHILDIPYYVFNMKDNFKKEVINYFVGEYIKGRTPNPCIMCNRKIKFELFLKKAIALGMD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + D+ R ++ R E+DQ+Y L+ TQ+ L FPLG K+ Sbjct: 124 YIATGHY---AIIEYDNTLCRYLLKRSKAREKDQTYVLYNMTQEILSKTIFPLGRFSKDE 180 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA + L +A K DSQ+ICF+ Y +++ GI EG V G ILG+ Sbjct: 181 VRKLAEKFKLPVAKKPDSQEICFIPDNDYGSFIEK-ETGINDEGVYVDTEGNILGKSKAY 239 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 NYTIGQR+GLG++ G+ ++VV + + ++V++G + + + ++N++ LF D Sbjct: 240 YNYTIGQRKGLGISTGKRMYVVDIKPDENKVVLGEEDKIFSDGLIASDLNFI---LF-DK 295 Query: 320 VVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + KIR ++++ + ++ V V F + + + GQ+ VFY+ D V+ Sbjct: 296 LESELEVTAKIRYTAKETKAKVIPVQNNKVLVKFYEKQRAITPGQSVVFYSGDI----VV 351 Query: 379 GGGIISGS 386 GGGII + Sbjct: 352 GGGIIEKA 359 >gi|168181589|ref|ZP_02616253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum Bf] gi|237796359|ref|YP_002863911.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum Ba4 str. 657] gi|182675018|gb|EDT86979.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum Bf] gi|229264171|gb|ACQ55204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum Ba4 str. 657] Length = 353 Score = 235 bits (600), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 125/363 (34%), Positives = 206/363 (56%), Gaps = 19/363 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V +AMSGGVDSSV A +LK GYDVIG+ + L+ + C DARRV + Sbjct: 6 VALAMSGGVDSSVSAYILKERGYDVIGIYMDLWRDEREE-----YCNKSAAEDARRVAEK 60 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 +++ +V + + F+ VI F Y +G TP PCV CN+T+KF + ++ GAD +A Sbjct: 61 LDIPFHVINIGKEFKANVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEFGADFMA 120 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ RR+++ + D ++DQ+Y ++ Q QL P G+ +KE +R+ Sbjct: 121 TGHYCKI-----EERNRRKVIVKAEDDKKDQTYMMYNLKQYQLERTIMPCGEYRKEHIRE 175 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A +GLD+ +K DSQ+ICF+ + +KR EG+ V G+I+G+H GII Y Sbjct: 176 IAENIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKSKVSEGNFVDKAGKIIGKHKGIIYY 235 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A+G+P +V+ ++ ++ V++G E + + +++N++ E ++ Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGDEEDIFHTELIAKDVNFIPFDKLEKSM-- 293 Query: 323 GFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + K+R S P + ++ V V F+ + + GQ+ VFY D ++GGG Sbjct: 294 --ELEAKVRYSAKPSKATIIPLGNNKVKVVFKNKQRAITKGQSVVFYDKDM----LVGGG 347 Query: 382 IIS 384 II Sbjct: 348 IIE 350 >gi|126434444|ref|YP_001070135.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium sp. JLS] gi|166235066|sp|A3PXL7|MNMA_MYCSJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|126234244|gb|ABN97644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium sp. JLS] Length = 359 Score = 235 bits (600), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 154/374 (41%), Positives = 203/374 (54%), Gaps = 26/374 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+VAMSGGVDSSV AA + G+DV+GV L L ++ + R GS CC+ +D DARR Sbjct: 1 MRVLVAMSGGVDSSVAAARMVDAGHDVVGVHLAL-SATPGTLRTGSRGCCSKEDAGDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D +++ YV+D+ +RF+ VI F +SY GETP PCV CN +KFS L LG Sbjct: 60 VADVLDIPFYVWDFADRFKEDVIDDFVASYERGETPNPCVRCNEKIKFSALAGRALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY R DG+ RR +D ++DQSY L T QQL FP+GD K Sbjct: 120 DALATGHYARL-----SDGRLRRA----VDADKDQSYVLAVLTAQQLRHAVFPIGDTPKA 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257 +R A E GL +ADK DS DICF+ G D + A I + G +V G L H Sbjct: 171 QIRAEAAERGLAVADKPDSHDICFIPSG---DTRAFLGARIGVRRGAVVDAGGTKLAEHE 227 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+ +TIGQR+GLG+A G+P +V +D + V VG E L+V R+ + Sbjct: 228 GVHGFTIGQRKGLGIAGPGPDGQPRYVTGIDAATGTVRVGGAEDLDVSRLTGERPVFTSG 287 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDS 372 F V +C V++R + + V +D GV V+ GVA+GQ V Y D Sbjct: 288 AAFGGPV----ECQVQVR-AHGGLADAVASHDAGVLSVELRAPLRGVAAGQTMVIYRPDP 342 Query: 373 NEARVLGGGIISGS 386 VL ISG+ Sbjct: 343 EGDEVLASATISGA 356 >gi|108798844|ref|YP_639041.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium sp. MCS] gi|119867959|ref|YP_937911.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium sp. KMS] gi|123179026|sp|Q1BAU9|MNMA_MYCSS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|166235067|sp|A1UE63|MNMA_MYCSK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|108769263|gb|ABG07985.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium sp. MCS] gi|119694048|gb|ABL91121.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium sp. KMS] Length = 359 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 154/374 (41%), Positives = 203/374 (54%), Gaps = 26/374 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+VAMSGGVDSSV AA + G+DV+GV L L ++ + R GS CC+ +D DARR Sbjct: 1 MRVLVAMSGGVDSSVAAARMVDAGHDVVGVHLAL-SATPGTLRTGSRGCCSKEDAGDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D +++ YV+D+ +RF+ VI F +SY GETP PCV CN +KFS L LG Sbjct: 60 VADVLDIPFYVWDFADRFKEDVIDDFVASYERGETPNPCVRCNEKIKFSALAGRALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY R DG+ RR +D ++DQSY L T QQL FP+GD K Sbjct: 120 DALATGHYARL-----SDGRLRRA----VDADKDQSYVLAVLTAQQLRHAVFPIGDTPKA 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257 +R A E GL +ADK DS DICF+ G D + A I + G +V G L H Sbjct: 171 QIRAEAAERGLAVADKPDSHDICFIPSG---DTRAFLGARIGVRRGAVVDAGGTKLAEHE 227 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+ +TIGQR+GLG+A G+P +V +D + V VG E L+V R+ + Sbjct: 228 GVHGFTIGQRKGLGIAGPGPDGQPRYVTGIDAATGTVRVGGAEDLDVWRLTGERPVFTSG 287 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDS 372 F V +C V++R + + V +D GV V+ GVA+GQ V Y D Sbjct: 288 AAFGGPV----ECQVQVR-AHGGLADAVASHDAGVLSVELRAPLRGVAAGQTMVIYRPDP 342 Query: 373 NEARVLGGGIISGS 386 VL ISG+ Sbjct: 343 EGDEVLASATISGA 356 >gi|205814682|sp|Q11UP4|MNMA_CYTH3 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 368 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 136/378 (35%), Positives = 209/378 (55%), Gaps = 18/378 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDA 76 K RV+VAMSGG+DSSV A +L GY+VIG+T++ Y + SK++ CC+ + DA Sbjct: 3 KKGRVLVAMSGGIDSSVAAVMLHEQGYEVIGMTMKTWDYANLGGSKKETGCCSLDSINDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + ++ HY+ D E F + VI F Y G TP PCV CN +K+ LL ++ Sbjct: 63 RNIAVSLGFPHYIVDIREEFGDYVINHFNKEYLDGRTPNPCVLCNTHIKWDSLLRRADKM 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 D +ATGHY + R R ++ + +D +DQSY L+ +QQ L FPLG + Sbjct: 123 DCDFIATGHYAQVR-----SENNRFVISKGLDENKDQSYALWGISQQSLSRTMFPLGHLH 177 Query: 197 KESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252 K +R +A E G +D+ +KS+S +ICFV Y +KR N G+ E G+ V +G + Sbjct: 178 KTDIRAMAAERGFMDLVNKSESYEICFVPDNDYRGFLKRRNPGLEEEVRGGEFVMEDGTV 237 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G+H G YTIGQR+GLG+ +G P+FV + K ++RV++G E L + +++ + L Sbjct: 238 VGKHEGYPFYTIGQRKGLGITLGYPVFVTEIQKENNRVVLGREEGLNRNGMWVDQ---LI 294 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 +E+ + K+R + D +++ D + V F + +A GQA VFY + Sbjct: 295 MSKYENLKGIQKQSITKVRYNDDGTSSTIEQVGDEMRVLFHEHVKAIAPGQAAVFYEGND 354 Query: 373 NEARVLGGGIISGSKRSD 390 V+GGG I S + D Sbjct: 355 ----VIGGGWIKSSFKQD 368 >gi|209528181|ref|ZP_03276652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arthrospira maxima CS-328] gi|209491390|gb|EDZ91774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arthrospira maxima CS-328] Length = 359 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 137/372 (36%), Positives = 207/372 (55%), Gaps = 30/372 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++VV +SGGVDSS AA+L GY+V+G+TL L + KG CC+ + + DA +C+ Sbjct: 3 KIVVGLSGGVDSSAAAAILHHQGYEVVGLTLWLM------RGKGQCCS-EGMVDAAHICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140 + + HY+ D + F+ +I Y AG TPLPC CNR VKF +L + +L + Sbjct: 56 QLGIPHYIVDSRDLFQTHIIDYLVEGYGAGITPLPCSQCNRAVKFGPMLGYASTELNINH 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R D R + R +D +DQSYFL+ TQ L + FPLG++ K Sbjct: 116 IATGHYARVSYNSQCD---RHQLKRAVDRTKDQSYFLYDLTQDLLAGVVFPLGEVPKSET 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R +A + L ADK +SQD+C V+ G + + G +G+IV G++LG H+GI Sbjct: 173 RRIAAQYNLKTADKPESQDLCLVEANGSMRAFLDKYITG--KKGEIVDTEGRVLGEHDGI 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQRRGLG++ EPL+V+ +D +RV+VG R+ + +R +NW+ + Sbjct: 231 HHYTIGQRRGLGISAAEPLYVLSIDPGRNRVVVGDRDRMTQTECTIRRVNWVSIAPPSEP 290 Query: 320 VVDGFKCFVKIRSSQDPVPVFV--------QRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + + V+IR P+PV V + V + F++ G+ GQA V+Y+ D Sbjct: 291 I----RAEVQIRYRSKPLPVTVVPLSSEADPQIGSRVRLIFDEPIFGITPGQAAVWYSED 346 Query: 372 SNEARVLGGGII 383 +LGGG+I Sbjct: 347 ----LLLGGGVI 354 >gi|257452558|ref|ZP_05617857.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Fusobacterium sp. 3_1_5R] gi|317059098|ref|ZP_07923583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 3_1_5R] gi|313684774|gb|EFS21609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 3_1_5R] Length = 350 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 144/381 (37%), Positives = 212/381 (55%), Gaps = 40/381 (10%) Query: 11 SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70 +++ + K +RV VA+SGGVDSS VA LLK+ GYD+ GVT++ C Sbjct: 3 NMEYREENKKVRVGVALSGGVDSSTVAYLLKKQGYDIFGVTMK-------------TCHA 49 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 +D DA++VC+ + + HYV D E F V+ F Y G+TP PC+ CNR +KF LL Sbjct: 50 EDA-DAKKVCEDLGIDHYVLDLTEPFSEKVMDYFVEEYMRGKTPNPCMVCNRHIKFGKLL 108 Query: 131 SVTRQLGADVLATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 GA +ATGHY + L VGDDG +DQ YFL +++L Sbjct: 109 DFILGQGAQYMATGHYTKLVDGHLSVGDDGG------------KDQVYFLSQVPKEKLKK 156 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIV 246 + FP+G+++K VR+LA+E+G+ + K DSQ+ICFV+ GK + ++++ + +G+IV Sbjct: 157 IIFPVGELEKIQVRELAKELGVRVYAKKDSQEICFVEDGKLKEFLIEKTKGKVYNKGNIV 216 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 NG+ILG+HNG+ YTIGQR+GLG++ PL+VV L+ + +IVG E L ++ Sbjct: 217 DKNGKILGKHNGLAFYTIGQRKGLGISSESPLYVVELNSERNEIIVGTNEDLMREQLTAE 276 Query: 307 EIN-WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQA 364 + N +L D L E + C+ K RS ++ D V F ++V V GQ Sbjct: 277 QCNLFLVDKLEE---LHNMNCYAKTRSRDTLHACRLEVLGDEVIAHFIDNKVRAVTPGQG 333 Query: 365 CVFYTSDSNE-ARVLGGGIIS 384 VFY NE +V+ GG I Sbjct: 334 VVFY----NELGQVIAGGFIK 350 >gi|315077923|gb|EFT49974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL053PA2] Length = 360 Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 147/370 (39%), Positives = 207/370 (55%), Gaps = 25/370 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84 MSGGVDS+V AA L G+DV GV L L + + S R+GS CC+ +D +DARR D + Sbjct: 1 MSGGVDSAVAAARLVEAGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFDARRAADRLG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG D +ATG Sbjct: 60 IPFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATG 119 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 Y R+++ DG + + R +D +DQSY L Q QL FPLG+ K +VR A Sbjct: 120 PYARTKVV---DGVTK--LYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKMNVRQEA 174 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHNGIINYT 263 +GL +ADK DS DICF+ G D ++ I + +G+I +G ++G HNG ++T Sbjct: 175 AALGLSVADKPDSNDICFIPDG---DTPGWLSEKIGSADGEIRDESGALVGHHNGYHHFT 231 Query: 264 IGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 IGQRRGL + + G+P +V+ ++ ++ V+VG E L VH I W Sbjct: 232 IGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWC-----SSE 286 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 V+ + ++R+ DPVP + GV V+ E S GVA GQA VFY D V+G Sbjct: 287 PVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD----LVVG 342 Query: 380 GGIISGSKRS 389 I G+ R+ Sbjct: 343 SATICGTDRA 352 >gi|291535108|emb|CBL08220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseburia intestinalis M50/1] Length = 359 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 134/366 (36%), Positives = 200/366 (54%), Gaps = 16/366 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + G CC V DARRV Sbjct: 5 KVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDEFVQEESGGCCGLSAVDDARRV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + +YV ++++ F+ V+ F + Y G TP PC+ CNR VK+ LL+ + +GAD Sbjct: 65 ADRLGIPYYVMNFKQEFKKNVMDYFTAEYLKGRTPNPCIACNRYVKWEALLNRSLAIGAD 124 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + R + + +DQ+Y L+ TQ+QL P+G K+ Sbjct: 125 YIATGHYAR----IEQLSNGRYAIKNSVTAAKDQTYALYNLTQEQLSHTLMPVGAYHKDE 180 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR-INAGIALEGDIVHLNGQILGRHNG 258 +R +A E+GL +A K DSQ+ICF+ Y + R + G+ V +G ++G+H G Sbjct: 181 IRKIAEEIGLMVAHKKDSQEICFISDNDYAGFIDRECGDQVPPPGNFVLTDGTVVGKHKG 240 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I +YTIGQR+GLG+A G P+FV + ++ V++G + + + IN++ +D Sbjct: 241 ITHYTIGQRKGLGIAFGHPVFVTEIRPETNEVVLGENRDVFTYELDADHINFMSIPDIQD 300 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 ++ KIR S V R +D ++ +F + V GQA V Y + V Sbjct: 301 EML----LKAKIRYSHSGSMCKVTRTGEDTIHCEFLEPVRAVTPGQAVVLYDGE----YV 352 Query: 378 LGGGII 383 GGG I Sbjct: 353 AGGGTI 358 >gi|253582177|ref|ZP_04859400.1| tRNA-specific 2-thiouridylase mnmA 1 [Fusobacterium varium ATCC 27725] gi|251835716|gb|EES64254.1| tRNA-specific 2-thiouridylase mnmA 1 [Fusobacterium varium ATCC 27725] Length = 362 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 140/375 (37%), Positives = 210/375 (56%), Gaps = 37/375 (9%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 D+N ++ + VAMSGGVDSS VA LLK+ GY+V G+T++ C +D Sbjct: 18 DENNQNTTIAVAMSGGVDSSTVAYLLKKQGYNVFGITMK-------------TCKPEDS- 63 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA++VCD + + +Y+ D + F+ V+ F Y G+TP PC+ CN+ +K L+ R Sbjct: 64 DAKKVCDDLGIPYYLLDVTKEFKEKVMDYFVDEYLKGKTPNPCMVCNKYIKLGLLIDFAR 123 Query: 135 QLGADVLATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GAD +ATGHY + + L +GDD +DQ YFL ++ L L+FP Sbjct: 124 SKGADFMATGHYTQMKDGILSMGDDAG------------KDQVYFLSQMKKENLKYLKFP 171 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNG 250 +G+++K VR+LA+ +G+ + K DSQ+ICFV+ GK + + + G A + G+IV NG Sbjct: 172 IGNLEKPKVRELAQLLGVRVYAKKDSQEICFVEDGKLKEFLMEMTDGKAGKPGNIVDTNG 231 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 +ILG+H G+ YTIGQR+GLG+A PL+V+ LD + V+VGP E L + IN Sbjct: 232 KILGKHKGLSFYTIGQRKGLGIAQENPLYVIELDSKRNCVVVGPNEMLFKDNLIAENINL 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEV-GVASGQACVFY 368 + L +D +C+ K RS ++ +G + V+F ++V V GQ VFY Sbjct: 292 I--SLNNIKELDEMECWAKTRSRDQLHKCKLEVLSNGNIKVNFIGNQVRAVTPGQGVVFY 349 Query: 369 TSDSNEARVLGGGII 383 D +VLG G I Sbjct: 350 DKDH---KVLGSGFI 361 >gi|116073367|ref|ZP_01470629.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. RS9916] gi|116068672|gb|EAU74424.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. RS9916] Length = 520 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 145/392 (36%), Positives = 211/392 (53%), Gaps = 36/392 (9%) Query: 10 NSLD-LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +LD L + P + RV V +SGGVDSS+ AALL G++V G+TL L + KG+CC Sbjct: 144 QALDRLRQWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMSG------KGACC 197 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 A + + DA +C+ + V H+V D+ E F+ ++ YA G TPLPC CNR VKF Sbjct: 198 A-EGLVDAAGICEQLGVPHHVVDFREHFKEQIVQFLVDGYAEGVTPLPCSRCNREVKFGP 256 Query: 129 LLS-VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 +L+ R+ D +ATGHY R R D R +++ R +D +DQSYFL+ Q+ L Sbjct: 257 MLAWAERERSIDRIATGHYARVRHGDQSDNGRHQLL-RGLDQRKDQSYFLYDLPQEALGR 315 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQG----KYFDVVKRINAGIALEG 243 L FPLG++ K R A GL A K +SQD+C + D EG Sbjct: 316 LVFPLGELTKPDTRLEAERFGLRTAKKPESQDLCLADHHGSMRAFLDTYLPPR-----EG 370 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 +IV L+G ++G+H+GI ++TIGQR+GLGVA EPL VV LD +RV+V R R Sbjct: 371 EIVLLDGTVVGQHDGIEHFTIGQRKGLGVAWSEPLHVVRLDAAMNRVVVATRAEAGTDRC 430 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ----RNDDGV-------YVDF 352 + +NW+ + A ++ V++R PV +++ + D + F Sbjct: 431 VVGAVNWV--SMAPPAQGARYRVEVQVRYRSQPVGAWLEVVPATDADAAGGRPHRCQLQF 488 Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 ++ + + GQA VFY + RVLGGG+I Sbjct: 489 DEPQFSITPGQAAVFYDGE----RVLGGGLIQ 516 >gi|311031538|ref|ZP_07709628.1| tRNA-specific 2-thiouridylase MnmA [Bacillus sp. m3-13] Length = 371 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 143/377 (37%), Positives = 208/377 (55%), Gaps = 27/377 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K PKD RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MTKAPKDTRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 NDVIRVCNQIGIPYYAVNFEKQYWDKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY + DG+ + M R +D +DQ+YFL Q+QL + FP+G Sbjct: 118 LDLGADYLATGHYAQVEF---RDGEYK--MLRGLDENKDQTYFLNQLGQEQLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI--ALEGDIVHLNGQ 251 +++K VR++A+ GL A K DS ICF+ + + K +G A G+++ ++G+ Sbjct: 173 NIEKSEVREIAKRAGLATATKKDSTGICFIGERNF----KEFLSGYLPAQPGNMLTMDGE 228 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 + G+H+G++ YTIGQR GLG+ G+P FV+ D + + VG E L I + Sbjct: 229 VKGKHDGLMYYTIGQRHGLGIGGSGDPWFVIGKDLEKNVLYVGQSFHNELLYSDSITATD 288 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366 I+W+ + + DG C K R Q V +Q D+ V V F++ + GQA V Sbjct: 289 ISWVSN----NPPADGTVCTAKFRYRQADNKVTIQHLEDNKVKVIFDEPVRAITPGQAVV 344 Query: 367 FYTSDSNEARVLGGGII 383 FY D LGGG I Sbjct: 345 FYNGD----ECLGGGTI 357 >gi|257413240|ref|ZP_04742446.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseburia intestinalis L1-82] gi|257204162|gb|EEV02447.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseburia intestinalis L1-82] gi|291539633|emb|CBL12744.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseburia intestinalis XB6B4] Length = 363 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 135/374 (36%), Positives = 203/374 (54%), Gaps = 16/374 (4%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQ 71 ++K +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + G CC Sbjct: 1 MEKRMAAKKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDEFVQEESGGCCGLS 60 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 V DARRV D + + +YV ++++ F+ V+ F + Y G TP PC+ CNR VK+ LL+ Sbjct: 61 AVDDARRVADRLGIPYYVMNFKQEFKKNVMDYFTAEYLKGRTPNPCIACNRYVKWEALLN 120 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + +GAD +ATGHY R + R + + +DQ+Y L+ TQ+QL P Sbjct: 121 RSLAIGADYIATGHYAR----IEQLSNGRYAIKNSVTAVKDQTYALYNLTQEQLSHTLMP 176 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR-INAGIALEGDIVHLNG 250 +G K+ +R +A E+GL +A K DSQ+ICF+ Y + R + G+ V +G Sbjct: 177 VGAYHKDEIRKIAEEIGLMVAHKKDSQEICFISDNDYAGFIDRECGDQVPPPGNFVLTDG 236 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 ++G+H GI +YTIGQR+GLG+A G P+FV + ++ V++G + + + IN+ Sbjct: 237 TVVGKHKGITHYTIGQRKGLGIAFGHPVFVTEIRPETNEVVLGENRDVFTYELDADHINF 296 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYT 369 + +D ++ KIR S V R +D ++ +F + V GQA V Y Sbjct: 297 MSIPDIQDEML----LKAKIRYSHSGSMCKVTRTGEDTIHCEFLEPVRAVTPGQAVVLYD 352 Query: 370 SDSNEARVLGGGII 383 + V GGG I Sbjct: 353 GE----YVAGGGTI 362 >gi|189219049|ref|YP_001939690.1| tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase [Methylacidiphilum infernorum V4] gi|189185907|gb|ACD83092.1| tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase [Methylacidiphilum infernorum V4] Length = 367 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 136/367 (37%), Positives = 197/367 (53%), Gaps = 16/367 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ R+VV MSGGVDS+V A LLKR+G+DV+G+TL+++ R CC + DAR Sbjct: 10 KNTRIVVGMSGGVDSTVAAYLLKREGFDVVGITLKIWTDRCMHISSEKCCGPDAINDARN 69 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + I + HYV D + F VI F Y+ G TP PCV CN +KF L + + G Sbjct: 70 MAAQIGIPHYVLDEADCFEKEVISYFLREYSLGRTPNPCVKCNEKIKFGRLWTRVQSWGV 129 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + LATGHY L D R + + D RDQSYFLF+ + QL + PLG+++K+ Sbjct: 130 EYLATGHYA---LVENQDHIPR--LKKAKDKRRDQSYFLFSLSAGQLSRMITPLGNLEKK 184 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHLNGQILGRHN 257 VR +A+E GL++ +K +S+DICFV Y + ++ + G I+ G+++G H Sbjct: 185 EVRAIAKEAGLNVWNKEESRDICFVPGKNYKEFIQGKKTPSNTHSGFIIDEEGKVIGEHQ 244 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI YT+GQR+GL G PL+VV +D S + G +SL Y + +W+ E Sbjct: 245 GIEGYTVGQRKGLPGGQGRPLYVVDIDPESKTIRAGSLKSLFKTHCYASQAHWI-----E 299 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + VK+R + V + D +DF ++G++ GQA V Y D Sbjct: 300 KDIESPRPVTVKLRYNYPEVEALLTLLGKDRFRLDFSSPQMGISPGQAAVCYDGDI---- 355 Query: 377 VLGGGII 383 VLGGG I Sbjct: 356 VLGGGWI 362 >gi|303229103|ref|ZP_07315905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Veillonella atypica ACS-134-V-Col7a] gi|302516227|gb|EFL58167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Veillonella atypica ACS-134-V-Col7a] Length = 353 Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 135/362 (37%), Positives = 200/362 (55%), Gaps = 18/362 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + VAMSGGVDSS+ AA+L + GY V G+TL L+ S V DA+++CD Sbjct: 5 IAVAMSGGVDSSLTAAMLLKQGYKVFGITLWLWVSGTPYDE-----VPLAVTDAKKMCDF 59 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + H++ D + F V+ F YA G TP PCV CN+ +KF +L+ +LGA + Sbjct: 60 LGIEHHIIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATHMV 119 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + Y D G + + +D +DQSY ++ Q+ L + FPLG K R Sbjct: 120 TGHYAQVN-YNEDTGLYE--LHKGVDPTKDQSYVMYNMNQRILSHIMFPLGGQCKTETRK 176 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA E L +A K DS DICF+ G Y +V G+IV +G+ILG+H G+ NY Sbjct: 177 LAAEYDLPVAKKPDSVDICFLPHGNYQKLVVEEMKTKPKSGNIVTEDGEILGKHTGLFNY 236 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A PL+V+ + + VIVGP E L +R+ + N+L D + ++ + Sbjct: 237 TIGQRKGLGIAYKHPLYVIGFNGERNEVIVGPNERLFTNRMICKFYNFLDDTIHKELKAE 296 Query: 323 GFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 G KIR + +P P + +DD + V F++ + + GQ+ FY N ++LGG Sbjct: 297 G-----KIRYAANPSPCTARILDDDTMEVIFDEPQRAITPGQSVAFY----NGTQLLGGA 347 Query: 382 II 383 +I Sbjct: 348 VI 349 >gi|304317430|ref|YP_003852575.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778932|gb|ADL69491.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 372 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 141/371 (38%), Positives = 211/371 (56%), Gaps = 24/371 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+++VVV MSGGVDSSV A LLK GYDV+G+ ++ ++ S G C A +D D R Sbjct: 6 KNIKVVVGMSGGVDSSVSALLLKEQGYDVVGIFMKNWDEEDDS---GYCTAAEDYEDVVR 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD I + +Y ++ + + + V F Y +G TP P V CN+ +KF L + ++GA Sbjct: 63 VCDKIGIPYYSINFTQEYWDRVFKYFLDEYRSGRTPNPDVMCNKEIKFKAFLDFSLKIGA 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R +GK R M + +D +DQ+YFL Q+QL FP+G + K Sbjct: 123 DYIATGHYARIEY---SNGKYR--MLKGVDKNKDQTYFLCELGQKQLSKTIFPIGHLNKF 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++AR+ GL ADK DS ICF+ + K+ + + + A G+I L+G++LG+H+G Sbjct: 178 EVREIARKAGLKTADKKDSTGICFIGERKFKEFLNQFLP--AKPGEIRDLSGRVLGKHDG 235 Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGPRE---SLEVHRIYLREINWLG 312 ++ YT+GQRR G+ GEP FVV D ++ + V E +L + ++ +++NW+ Sbjct: 236 LMFYTLGQRRGLGIGGIGTGEPWFVVDKDVENNILYVAQGEKNPALYSYALFTKDVNWID 295 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + + D F+C K R Q V V DDG +V F+K + V GQ VFY + Sbjct: 296 NSI----EADTFRCKAKFRYRQPDQDVTVYAKDDGYFVVFDKPQRAVTPGQFVVFYDGEY 351 Query: 373 NEARVLGGGII 383 LGGG+I Sbjct: 352 ----CLGGGVI 358 >gi|328955218|ref|YP_004372551.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coriobacterium glomerans PW2] gi|328455542|gb|AEB06736.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coriobacterium glomerans PW2] Length = 380 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 144/378 (38%), Positives = 199/378 (52%), Gaps = 20/378 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGSCCAGQDVYDARRVCD 81 V+VAMSGGVDSSV A LL GY IG T+ LY+ + +G C DV DAR VC Sbjct: 7 VLVAMSGGVDSSVAAHLLLERGYTCIGATMSLYDETTMGRDPEGICGCADDVADARAVCA 66 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H VFD+++ F VI F Y +G TP PC DCNR +KF LL ++G D + Sbjct: 67 RLGIEHRVFDFKDLFERRVIDRFVEQYLSGRTPNPCADCNRALKFGALLDRALEIGCDFI 126 Query: 142 ATGHYIRSRLYVGDD-----GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM- 195 ATGHY +R+ +D G+ R++ D+ +DQSY L++ Q++L + PLG++ Sbjct: 127 ATGHY--ARIETREDSEEGTGEGARLLRCATDISKDQSYMLYSLGQERLRRVLLPLGELI 184 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K VR +ARE G A K DSQ ICF+ + D ++R GDI+ G +LGR Sbjct: 185 KSRDVRRIAREQGFPNARKKDSQGICFIADRDFADFIERRVGAALPAGDILDGTGAVLGR 244 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW-LGDG 314 H G I YTIGQR+GLGVA G PLFV LD + V +G + L + W + Sbjct: 245 HRGAIRYTIGQRKGLGVAAGHPLFVTALDARCNTVTLGEQRELRADALIAEGWIWTMPAE 304 Query: 315 LFEDAVV----DGFKCFVKIRSSQDPVPVFVQR--NDDGVYVDFEKSEVGVASGQACVFY 368 E + G + R Q + R DD + + F++++ +A GQA V Y Sbjct: 305 EMEHRLAREREQGLHVLARTRYHQRAQAARMSRLGRDDLMRIVFDEAQYAIAPGQAVVVY 364 Query: 369 TSDSNEARVLGGGIISGS 386 D VLGGG + + Sbjct: 365 DDDI----VLGGGTVRST 378 >gi|313902383|ref|ZP_07835786.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermaerobacter subterraneus DSM 13965] gi|313467314|gb|EFR62825.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermaerobacter subterraneus DSM 13965] Length = 404 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 142/368 (38%), Positives = 201/368 (54%), Gaps = 16/368 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRV 79 RV+ AMSGGVDSSV+AALL+ GY+VIGVT+Q + + + R G CC+ V DARRV Sbjct: 8 RVLAAMSGGVDSSVMAALLRDQGYEVIGVTMQTWPAMEPEDEARYGGCCSLSAVDDARRV 67 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + + +YV + + F VI F + Y G TP PC+ CNR +KF + L LG D Sbjct: 68 AERLGIPYYVMNMRQDFEEKVIDYFVAEYLQGRTPNPCIACNRYIKFDEFLRRAEALGCD 127 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + D+ R I+ + D +DQ+Y L+ TQ+QL P+G +K Sbjct: 128 YVATGHYA---IVEYDEALGRFILRKSADRRKDQTYVLYNFTQEQLARTLLPIGRFEKSQ 184 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA GL A K +SQ+ICFV+ + ++ G I G+ +G H G+ Sbjct: 185 VRQLAEAYGLVTARKPESQEICFVKDNDHRRFLEERAGDRIRPGPIYDTRGRRVGTHRGL 244 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFED 318 YT+GQRRGLG+ P++VV + + +IVGP + + E+NW+ GL + Sbjct: 245 AYYTVGQRRGLGIQSDRPMYVVRILPEKNALIVGPDTATYARGLRAVEVNWVSWPGLAGE 304 Query: 319 AVVDGFKCFVKIRSSQDPVPV--FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 A V V+ +S + P V V R D V V FE+ + + GQA VFY D R Sbjct: 305 ARV---TARVRYKSPEAPAVVRPLVGRQ-DAVEVWFEEPQRAITPGQAVVFYDGD----R 356 Query: 377 VLGGGIIS 384 V GGG+I+ Sbjct: 357 VAGGGVIA 364 >gi|41409155|ref|NP_961991.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium avium subsp. paratuberculosis K-10] gi|81571098|sp|Q73VF7|MNMA_MYCPA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|41397975|gb|AAS05605.1| hypothetical protein MAP_3057c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 358 Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 144/375 (38%), Positives = 204/375 (54%), Gaps = 24/375 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDSSV AA + G+DV+GV L L ++ + R GS CC+ +D DARR Sbjct: 1 MRVLAAMSGGVDSSVAAARMVDAGHDVVGVHLAL-STAPGTLRTGSRGCCSKEDASDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ E+F+ VI F S+YA GETP PCV CN+ +KFS L + LG Sbjct: 60 VADVLGIPFYVWDFAEKFQADVIDEFLSAYARGETPNPCVTCNQKIKFSALSAKAVALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R G R R R +D ++DQSY L + +QL FP+GD K Sbjct: 120 DAVATGHYARL------SGGRLR---RAVDKDKDQSYVLAVLSAEQLRHAAFPIGDTPKP 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHN 257 +R+ A GL +A+K DS DICF+ G + +RI G +V +G +L H+ Sbjct: 171 QIREEAARRGLAVAEKPDSHDICFIPSGNTRAFLGERIG---VRRGAVVDADGTVLAEHD 227 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+ +TIGQR+GLG+A G P +V +D +++ V VG L+V + R + + Sbjct: 228 GVHGFTIGQRKGLGIAGPGPDGRPRYVTAIDADTATVRVGEASDLDVREMLGRAVVFTSG 287 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 A F+C V++R+ + + D + V GVA GQ Y D + Sbjct: 288 ----TAPSGPFECAVQVRAHGETADAVAELVGDELVVRLRAPLRGVAPGQTLALYRRDPD 343 Query: 374 EARVLGGGIISGSKR 388 VLG I+G+ R Sbjct: 344 GDEVLGSATIAGTSR 358 >gi|312891399|ref|ZP_07750916.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mucilaginibacter paludis DSM 18603] gi|311296093|gb|EFQ73245.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mucilaginibacter paludis DSM 18603] Length = 362 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 135/376 (35%), Positives = 209/376 (55%), Gaps = 28/376 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDA 76 K R++VAMSGGVDSSV A +L GY+VIG+T++ Y S + ++ CC+ + DA Sbjct: 3 KHGRILVAMSGGVDSSVAAVMLHEQGYEVIGLTMKTWDYASSGTNTKETGCCSLDSINDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + HY+ D F + VI F Y AG TP PCV CN +K+ LL +L Sbjct: 63 RALAVGYGFPHYILDIRSEFGDFVIDNFVDEYLAGRTPNPCVLCNTHIKWEALLKRADKL 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 + +ATGHY R + D+G R ++ + +D +DQSY L+ +Q+ L RFPLG Sbjct: 123 DCEFIATGHYANIRQH--DNG--RYVISKGLDQNKDQSYVLWGVSQRNLARTRFPLGSFA 178 Query: 197 KESVRDLAREMG-LDIADKSDSQDICFVQQGKY--------FDVVKRINAGIALEGDIVH 247 K +R +A++MG L++A+KS+S +ICFV Y D+ +R++ G+ V Sbjct: 179 KAEIRQMAKDMGQLELANKSESYEICFVPDNDYRSFLRHKVGDLEERVSG-----GNYVL 233 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 +G ++G+H G YTIGQR+GLG+A+G+P+FV + S+ V++G E LE ++R Sbjct: 234 TDGTVVGKHQGYPFYTIGQRKGLGIALGQPMFVTQILPESNTVVLGTAEDLERREAWVRN 293 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 +N + + + + + KIR + + + + + VDF S G+A GQ+ VF Sbjct: 294 LNLIK----YETITEPIEATTKIRYKDAGMLSNIVQIGEHMKVDFHHSVSGIAPGQSAVF 349 Query: 368 YTSDSNEARVLGGGII 383 Y D +LGGG + Sbjct: 350 YEGDD----LLGGGFL 361 >gi|242373921|ref|ZP_04819495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis M23864:W1] gi|242348475|gb|EES40077.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis M23864:W1] Length = 372 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 145/370 (39%), Positives = 209/370 (56%), Gaps = 20/370 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 +D+RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 4 EDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIA 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC+ I + +Y ++EE + + V F Y G TP P V CN+ +KF L +LGA Sbjct: 61 VCNQIGIPYYAVNFEEEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R + +DG M R +D +DQ+YFL +Q+QL + FP+GD++K Sbjct: 121 DYVATGHYARIRRH--EDGHVE--MLRGVDNNKDQTYFLNQLSQEQLSKVMFPIGDIEKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E L A K DS ICF+ + + + + + A GD+V L+G+ +G+H+G Sbjct: 177 EVRRIAEEQDLATAKKKDSTGICFIGERNFKEFLSQYLP--AQSGDMVTLDGKKMGQHSG 234 Query: 259 IINYTIGQRRGLGVAM-GEPLFVV--YLDKNSSRVIVG-PRESLEVHRIYLREINWLGDG 314 ++ YTIGQR GLG+ G+P FVV LD N V G ++L + + +++ +G Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVVGKNLDDNVLYVEQGFHHDALYSDYLVASDYSFVNEG 294 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 E + GF+C K R Q VFVQR N++ + V F++ + GQA VFY N Sbjct: 295 --EINLEQGFECTAKFRYRQKDTKVFVQRENENSIRVTFDQPVRAITPGQAVVFY----N 348 Query: 374 EARVLGGGII 383 LGG I Sbjct: 349 GEVCLGGATI 358 >gi|111023428|ref|YP_706400.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodococcus jostii RHA1] gi|122955129|sp|Q0S2J4|MNMA_RHOSR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|110822958|gb|ABG98242.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodococcus jostii RHA1] Length = 364 Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 146/374 (39%), Positives = 207/374 (55%), Gaps = 25/374 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV+GV L L ++ + R GS CC+ +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVAAGHDVVGVHLAL-SAEPGTLRTGSRGCCSKEDAGDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ +RF+ VI F +SYAAGETP PC+ CN +KF+ L LG Sbjct: 60 AADVLGIPFYVWDFADRFKEDVIDDFVASYAAGETPNPCLRCNEKIKFAALADRAIALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY ++L G ++ R +D ++DQSY L T +QL FP+GD K+ Sbjct: 120 DAVATGHY--AQLENG-------VLRRAVDADKDQSYVLGVLTAEQLSRAMFPVGDTPKD 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLN-GQILGRH 256 +R+ A E GL +A+K DS DICF+ G D + A I + G +V + G++L H Sbjct: 171 RIREEAAERGLAVANKPDSHDICFIPSG---DTRAFLGARIGVRPGSVVDADSGEVLAEH 227 Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G+ +TIGQR+GLGV A G+P +V ++ ++ V VG +LEV I W Sbjct: 228 EGVHGFTIGQRKGLGVQGPAADGQPRYVTSIEPDTGTVRVGSARNLEVDAITADRAVWTS 287 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 V +C V++R+ + D G+ + + GVA GQA V Y +D Sbjct: 288 G----STPVGPVECTVQVRAHGGLAEAVAEAVDGGIAISLREPLTGVAKGQAVVLYRTDP 343 Query: 373 NEARVLGGGIISGS 386 VLG G ISG+ Sbjct: 344 AGDIVLGSGTISGT 357 >gi|319949296|ref|ZP_08023374.1| tRNA-specific 2-thiouridylase MnmA [Dietzia cinnamea P4] gi|319437034|gb|EFV92076.1| tRNA-specific 2-thiouridylase MnmA [Dietzia cinnamea P4] Length = 366 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 150/370 (40%), Positives = 197/370 (53%), Gaps = 23/370 (6%) Query: 31 VDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTINVSHY 88 +DS+V AA G++V+GV L L +S A+ R GS CC+ +D DARRV D + + Y Sbjct: 1 MDSAVAAARAVAAGHEVVGVHLAL-SSDPATLRTGSRGCCSREDAGDARRVADLLGIPFY 59 Query: 89 VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIR 148 V+D+ ERFR VI F SYA GETP PC+ CN +KF LL LG D +ATGHY R Sbjct: 60 VWDFAERFRADVIDDFVESYARGETPNPCLRCNERIKFEALLERGMALGFDAVATGHYAR 119 Query: 149 SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMG 208 DG RR ++ R +D +DQSY L T +QL FPLGD K VR A G Sbjct: 120 LSTEELPDGSRRPVLRRAVDAAKDQSYVLGVLTPEQLAHSMFPLGDSLKSQVRAEAEAAG 179 Query: 209 LDIADKSDSQDICFVQQG---KYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 L +A K DS DICF+ G + + G ++ D G LGRH+GI +TIG Sbjct: 180 LPVATKPDSHDICFIPSGDTRAFLGARIGVRPGAVVDAD----TGDELGRHDGIHGFTIG 235 Query: 266 QRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 QR+GLGV A G P +V +D +S V VG + L + WL D + Sbjct: 236 QRKGLGVQGPAADGRPRYVTAIDADSGTVTVGGADHLLSVAMTATSPYWLVDDDIRET-- 293 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDG----VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 C V+IR+ + P V+R DG + + ++ GVA GQA V Y S+ + RV Sbjct: 294 ---DCHVQIRAHGEATPAHVRRIGDGADATLEITLDEPVRGVAPGQAAVLYRSEPDGDRV 350 Query: 378 LGGGIISGSK 387 LG G IS S+ Sbjct: 351 LGSGTISASR 360 >gi|27468222|ref|NP_764859.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis ATCC 12228] gi|57867112|ref|YP_188761.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus epidermidis RP62A] gi|282875953|ref|ZP_06284820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis SK135] gi|293366421|ref|ZP_06613099.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|30173406|sp|Q8CSA5|MNMA_STAES RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71153357|sp|Q5HNS9|MNMA_STAEQ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|27315768|gb|AAO04903.1|AE016748_137 (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis ATCC 12228] gi|57637770|gb|AAW54558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis RP62A] gi|281294978|gb|EFA87505.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis SK135] gi|291319455|gb|EFE59823.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|329735247|gb|EGG71539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis VCU045] gi|329737370|gb|EGG73624.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis VCU028] Length = 372 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 205/382 (53%), Gaps = 44/382 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD+RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 4 KDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIA 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC+ I + +Y ++EE++ + V F Y G TP P V CN+ +KF L +LGA Sbjct: 61 VCNQIGIPYYAVNFEEQYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R + DDG M R +D +DQ+YFL +Q+QL + FP+GD++K Sbjct: 121 DYVATGHYARIRRH--DDGHVE--MLRGVDNNKDQTYFLNQLSQEQLSKVMFPIGDIEKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E L A K DS ICF+ + + + + A G+++ LNG+ +G+H+G Sbjct: 177 EVRRIAEEQNLATAKKKDSTGICFIGERNFKEFLSHYLP--AQSGEMLTLNGKKMGQHSG 234 Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++ YTIGQR GLG+ G+P FVV + N + + V E + D L+ Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVVGKNLNDNVLYV--------------EQGFHHDALYS 280 Query: 318 DAVV---------------DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361 D ++ GF+C K R Q V+VQR N++ + V F + + Sbjct: 281 DYLIASDYSFVNPSEIDLEKGFECTAKFRYRQKDTKVYVQRENENSIRVTFAEPVRAITP 340 Query: 362 GQACVFYTSDSNEARVLGGGII 383 GQA VFY N+ LGG I Sbjct: 341 GQAVVFY----NQEVCLGGATI 358 >gi|28210754|ref|NP_781698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium tetani E88] gi|75542643|sp|Q896F5|MNMA1_CLOTE RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 gi|28203192|gb|AAO35635.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium tetani E88] Length = 362 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 140/373 (37%), Positives = 210/373 (56%), Gaps = 32/373 (8%) Query: 26 AMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVY-DARRVCDT 82 MSGGVDSSV A LLK GYDVIG+T++++ N SK K +D+ A+ VCD Sbjct: 12 GMSGGVDSSVTAYLLKEQGYDVIGMTMKVFPGNYHDGSKEKI-----EDIMKSAKEVCDF 66 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + D E F V PF Y G TP PCV CN+ +KF L+ +LGAD +A Sbjct: 67 LEIPFVEVDLIEEFNKKVATPFMQDYIEGRTPNPCVYCNKHIKFDAFLNKAIELGADYIA 126 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + DG R ++ R D +DQ+Y L+ Q QL + P GD KE +R+ Sbjct: 127 TGHYAN---IIEKDG--RTLIYRAEDENKDQTYMLYNLKQHQLKHILMPCGDYNKEQIRE 181 Query: 203 LAREMGLDIADKSDSQDICFV---QQGKYF--DVVKRINAGIALEGDIVHLNGQILGRHN 257 +A+++GL I +K DS++ICF+ G+Y + K+I EG+ V G++LGRH Sbjct: 182 IAKKIGLKIHNKKDSEEICFIPDDDHGRYIRENCKKKIQ-----EGNFVDEKGKVLGRHK 236 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GIINYTIGQR+GLG+A+G+P +V+ + ++V++G E + + + +++N++ Sbjct: 237 GIINYTIGQRKGLGIALGKPAYVIDIIPEKNQVVLGEEEKIFNNILIAKDVNFIPF---- 292 Query: 318 DAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 D + + K KIR S++ + ++ V V F+K + + GQ+ VFY E Sbjct: 293 DELKEKIKLEAKIRYSAKGEIAEIEPLENNRVKVTFDKKQRAITKGQSVVFYI----ENL 348 Query: 377 VLGGGIISGSKRS 389 +LGGGII + S Sbjct: 349 LLGGGIIESVESS 361 >gi|300858284|ref|YP_003783267.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Corynebacterium pseudotuberculosis FRC41] gi|300685738|gb|ADK28660.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Corynebacterium pseudotuberculosis FRC41] gi|302206004|gb|ADL10346.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium pseudotuberculosis C231] gi|302330557|gb|ADL20751.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium pseudotuberculosis 1002] gi|308276239|gb|ADO26138.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium pseudotuberculosis I19] Length = 372 Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 148/377 (39%), Positives = 208/377 (55%), Gaps = 19/377 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRV 79 MRV+ AMSGGVDS+V AA G++V+GV L L + + CC+ +D DARRV Sbjct: 1 MRVLAAMSGGVDSAVAAARAVAAGHEVVGVHLALSQDPQTVRESSRGCCSLEDSADARRV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + + YV+D+ +RF+ VI F SSY AGETP PC+ CN +KF+ LL LG D Sbjct: 61 CDKLGIPFYVWDFSDRFKEDVIDDFISSYEAGETPNPCLRCNEKIKFAALLERGIALGFD 120 Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + TGHY + ++ G DG RR +D E+DQSY L +++++ FP+GD K Sbjct: 121 AVVTGHYAQLTQPEDGGDGYLRRA----IDPEKDQSYVLGVLSEKEIAHCMFPVGDTVKP 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R+ A G +A K DS DICF+ G + R + G+ G IV G+ L H+G Sbjct: 177 KIREEAAAQGFSVAKKPDSYDICFIPDGNTQAFLGR-HIGLR-PGMIVDTEGRALKEHDG 234 Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 NYTIGQR+GL + A G+P +V +D + V VG R+ L V +IY + +L Sbjct: 235 AWNYTIGQRKGLDIKQPAADGKPRYVTDIDAATGTVTVGSRDDLSVSQIYADRLKYLHPA 294 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 L D F V++R+ VP V V ++D + + K GVA GQA V Y D+ Sbjct: 295 LSGD-----FSAEVQVRAHGSVVPCHVSVDSHNDTMTITLHKPLSGVARGQAAVIYLPDA 349 Query: 373 NEARVLGGGIISGSKRS 389 VLG G I +++S Sbjct: 350 GGDIVLGSGTIYSTQKS 366 >gi|255036423|ref|YP_003087044.1| tRNA-specific 2-thiouridylase MnmA [Dyadobacter fermentans DSM 18053] gi|254949179|gb|ACT93879.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Dyadobacter fermentans DSM 18053] Length = 368 Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 134/384 (34%), Positives = 207/384 (53%), Gaps = 30/384 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDA 76 K R++VAMSGG+DSS+ A LL GY+VIG+T++ Y S +K++ CC+ + DA Sbjct: 3 KHGRILVAMSGGIDSSLAAVLLHEQGYEVIGMTMKTWDYASSGGTKKETGCCSLDSINDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + + HY+ D F + VI F Y G TP PCV CN +K+ LL +L Sbjct: 63 RNIAVELGFPHYILDIRAEFGDYVIDHFTGEYLEGRTPNPCVLCNTHIKWDALLRRADRL 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 + +ATGHY + G R + + +D +DQSY L+ +Q+ L + PLG + Sbjct: 123 DCEFIATGHYANMQFNNG-----RHYVSKGIDAWKDQSYVLWGVSQESLARTKLPLGYLH 177 Query: 197 KESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252 K +R++ARE G +D+ +KS+S +ICFV Y +KR G+ E G+ V+ +G I Sbjct: 178 KAEIREMARERGFIDLVNKSESYEICFVPDNDYRGFLKRRIPGLEAEVAGGNFVYADGTI 237 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP-----RESLEVHRIYLRE 307 +G+H G YT+GQR+GLG+A+G P+FV + K+++ V++G R+ + V ++ L++ Sbjct: 238 VGKHEGYPFYTVGQRKGLGIALGRPVFVTEIRKDTNEVVLGDMPDLFRDGMNVSKLNLQK 297 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACV 366 ++ + K+R D P + Q D + F G+A GQA V Sbjct: 298 YA---------SIEKPLETITKVRYKHDGTPALIEQTGPDQIVARFHDGVNGIAPGQAAV 348 Query: 367 FYTSDSNEARVLGGGIISGSKRSD 390 FY D V+GGG I S R + Sbjct: 349 FYEGDD----VVGGGWIMKSFRQE 368 >gi|261418420|ref|YP_003252102.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus sp. Y412MC61] gi|319767620|ref|YP_004133121.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus sp. Y412MC52] gi|261374877|gb|ACX77620.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus sp. Y412MC61] gi|317112486|gb|ADU94978.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus sp. Y412MC52] Length = 371 Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 146/375 (38%), Positives = 201/375 (53%), Gaps = 23/375 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MNKAPHETRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F + Y AG TP P V CN+ +KF L Sbjct: 58 EDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +GAD +ATGHY R DG+ + M R D +DQ+YFL Q QL + FP+G Sbjct: 118 MSIGADYIATGHYARVEF---RDGEYK--MLRGADPNKDQTYFLNQLGQAQLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR +A+E GL A K DS ICF+ + + + + A G + L+G++ Sbjct: 173 HLQKADVRRIAKEAGLATAGKKDSTGICFIGERDFKEFLSHYLP--AQPGVMKTLDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 GRH+G++ YTIGQR GLG+ GEP FVV D + + V E L + ++N Sbjct: 231 GRHDGVMYYTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVN 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368 W+ D E F+C K R Q V V V D GV V F+ V GQA VFY Sbjct: 291 WVSDRKPEAP----FRCTAKFRYRQPDVGVTVHPLADGGVEVVFDAPARAVTPGQAVVFY 346 Query: 369 TSDSNEARVLGGGII 383 N LGGG I Sbjct: 347 ----NGEECLGGGTI 357 >gi|317122065|ref|YP_004102068.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermaerobacter marianensis DSM 12885] gi|315592045|gb|ADU51341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermaerobacter marianensis DSM 12885] Length = 405 Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 139/367 (37%), Positives = 202/367 (55%), Gaps = 14/367 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRV 79 RV+ AMSGGVDSSV+AALL+ +GY+VIGVT+Q + + A R G CC+ + DARRV Sbjct: 8 RVLAAMSGGVDSSVMAALLRDEGYEVIGVTMQTWPAMAAEDEARYGGCCSLSAIDDARRV 67 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + + +YV + + F VI F Y G TP PC+ CNR +KF + L + LG D Sbjct: 68 AERLGIPYYVMNMRQDFEEKVIDYFVEEYLRGRTPNPCIACNRYIKFDEFLRRAQALGCD 127 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + DD R ++ + D +DQ+Y L+ TQ+QL P+G +K Sbjct: 128 YVATGHYA---IVEYDDAAGRFVLRKSADRRKDQTYVLYNFTQEQLARTLLPIGRFEKSE 184 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA GL A K +SQ+ICFV+ + ++ G I + G+ +G H G+ Sbjct: 185 VRRLAEAYGLVTARKPESQEICFVKDDDHHRFLEERAGDRIQPGPIYDIRGRRIGTHRGL 244 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFED 318 YT+GQRRGLG+ P++VV + + +IVGP + + ++NW+ GL + Sbjct: 245 AYYTVGQRRGLGIQSDRPMYVVRILPEQNALIVGPDTATYARGLRAVDVNWVSWPGLAGE 304 Query: 319 AVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 A V V+ +S + V V DD V V F++ + + GQA VFY D RV Sbjct: 305 ARV---TAKVRYKSPEAAAVVRPVAGRDDAVEVWFDEPQRAITPGQAVVFYDGD----RV 357 Query: 378 LGGGIIS 384 GGG+I+ Sbjct: 358 AGGGVIA 364 >gi|89100972|ref|ZP_01173817.1| TrmU [Bacillus sp. NRRL B-14911] gi|89084308|gb|EAR63464.1| TrmU [Bacillus sp. NRRL B-14911] Length = 370 Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 142/375 (37%), Positives = 207/375 (55%), Gaps = 24/375 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K+PKD RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MAKSPKDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY +R+ G++G + M R +D +DQ+YFL T++QL + FP+G Sbjct: 118 MSLGADYLATGHY--ARVEHGENGVK---MLRGLDENKDQTYFLNQLTEEQLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR++A++ GL A K DS ICF+ + + + + N A G + + G+ + Sbjct: 173 SIEKSEVREIAKKAGLATAAKKDSTGICFIGERNFKEFLG--NYLPAQPGSMETMEGETV 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 GRH+G++ YTIGQR GLG+ G+P FV+ D + + VG E L I +++ Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGAGDPWFVIGKDLKRNVLYVGQGFDNEKLYSDSIIADKVS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W+ A + F+C K R Q V V ++G + F V GQA VFY Sbjct: 291 WV-----SKAPGETFECTAKFRYRQPDNSVTVTLLENGQAKITFHSPIRAVTPGQAVVFY 345 Query: 369 TSDSNEARVLGGGII 383 + LGGG I Sbjct: 346 DGEV----CLGGGTI 356 >gi|314972469|gb|EFT16566.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL037PA3] Length = 360 Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 146/375 (38%), Positives = 206/375 (54%), Gaps = 25/375 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84 MSGG+DS+V AA L G+DV GV L L + + S R+GS CC+ +D + ARR D + Sbjct: 1 MSGGIDSAVAAARLVEAGHDVTGVHLALSRNPR-SHREGSRGCCSLEDSFAARRAADRLG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG D +ATG Sbjct: 60 IPFYVWDFSDRFAAEVIDPFIAEYQAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATG 119 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY ++++ DG + + R +D +DQSY L Q QL FPLG+ K VR A Sbjct: 120 HYAQAKVI---DGVTK--LYRSVDPGKDQSYVLAVLDQDQLAHSLFPLGNSLKTDVRQEA 174 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHNGIINYT 263 +GL +ADK DS DICF+ G D ++ I + +G+I +G ++GRHNG +T Sbjct: 175 AALGLSVADKPDSNDICFIPDG---DTPGWLSEKIGSADGEIRDESGALVGRHNGYHRFT 231 Query: 264 IGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 IGQRRGL + + G+P +V+ ++ ++ V+VG E L V+ I W Sbjct: 232 IGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVYHIEAIRPVWC-----SGE 286 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 D + V++R+ DPVP + GV V+ E GVA GQA VFY D V+G Sbjct: 287 PADTWHGQVQVRAHGDPVPATISTVPSGVSVELEDPLRGVAPGQAAVFYDGD----LVVG 342 Query: 380 GGIISGSKRSDAVEE 394 I G+ R+ E Sbjct: 343 SATICGTDRAGTTAE 357 >gi|123966685|ref|YP_001011766.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str. MIT 9515] gi|205816903|sp|A2BXZ8|MNMA_PROM5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|123201051|gb|ABM72659.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus str. MIT 9515] Length = 390 Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 144/385 (37%), Positives = 214/385 (55%), Gaps = 32/385 (8%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 +K+ K +VV +SGGVDSS+ AALL DG+ V G+TL L K +GSCC+ + + Sbjct: 18 NKSKKQKHIVVGLSGGVDSSLSAALLMEDGWKVEGLTLWLM------KGEGSCCS-EGLV 70 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VT 133 DA +C+ + + H + D F VI Y +G TPLPC CN+ VKF ++L V Sbjct: 71 DAAGLCEDLGIQHNILDSRVIFEREVIKKTTEGYESGYTPLPCSMCNKNVKFEEMLKFVI 130 Query: 134 RQLGADVLATGHYIR----SRLYVGDDGK---RRRIMCRPMDLERDQSYFLFATTQQQLC 186 +Q +ATGHY R S ++ + + ++ R D +DQSYFL++ +Q+ L Sbjct: 131 KQKEFTYIATGHYARVIKSSCEHINNSENFQFKDFLLLRGADRNKDQSYFLYSLSQEVLS 190 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDI 245 L PLGD+KKE R A +GL A K +SQD+C V+ Y + K I+ + + G+I Sbjct: 191 RLILPLGDLKKEETRKEALRLGLRTAKKPESQDLCLVEH--YGSMQKFIDNHVKTKNGEI 248 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 H+NG+ LG HNGI ++TIGQR+GLG+A EPL+V LDK + V V + L + Sbjct: 249 KHINGKTLGTHNGIQHFTIGQRKGLGIAWPEPLYVESLDKQKNIVYVANKNDLLKREAII 308 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDP-----VPVFVQRNDDGVY-VDFEKSEVGV 359 +E+NW+ +A + + +IR +P VP+ + N + + FE ++ V Sbjct: 309 KEVNWVSI----EAPIKEIEVEAQIRYRSEPVKGILVPLKSKDNLTKRFKLIFEDNQSSV 364 Query: 360 ASGQACVFYTSDSNEARVLGGGIIS 384 GQA VFY + +LGGG+IS Sbjct: 365 TPGQAAVFYKGEI----LLGGGLIS 385 >gi|312622080|ref|YP_004023693.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor kronotskyensis 2002] gi|312202547|gb|ADQ45874.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor kronotskyensis 2002] Length = 360 Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 133/368 (36%), Positives = 206/368 (55%), Gaps = 15/368 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDARRV 79 +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ + + R+ SCC+ V DARRV Sbjct: 4 KVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETEDELIREKSCCSLTAVDDARRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +++ +YVF+ ++ F+ VI F Y G TP PC+ CNR +KF L LG D Sbjct: 64 AHILDIPYYVFNMKDDFKKEVINYFVDEYIKGRTPNPCIMCNRKIKFELFLKKAMVLGMD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + D R ++ R E+DQ+Y L+ TQ+ L FPLG K+ Sbjct: 124 YIATGHY---AIIEYDKSLCRYLLKRSKAREKDQTYVLYNMTQEMLSKTLFPLGRFSKDE 180 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA + L +A K DSQ+ICF+ Y +++ GI EG V G ILG+ Sbjct: 181 VRKLAEKFNLPVARKPDSQEICFIPDNDYGSFIEK-ETGINDEGVYVDTEGNILGKSKAY 239 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 NYTIGQR+GLG++ G+ ++VV + ++V++G + + + ++N++ D Sbjct: 240 YNYTIGQRKGLGISTGKRMYVVDIKPEENKVVLGEEDKIFSDGLIAYDLNFIPF----DK 295 Query: 320 VVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + KIR ++++ + ++ V V F + + + GQ+ VFY+ D V+ Sbjct: 296 LESELEVTAKIRYTAKEAKAKVIPAQNNKVLVKFCEKQRAITPGQSVVFYSGDI----VV 351 Query: 379 GGGIISGS 386 GGGII + Sbjct: 352 GGGIIEKA 359 >gi|312110111|ref|YP_003988427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus sp. Y4.1MC1] gi|311215212|gb|ADP73816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus sp. Y4.1MC1] Length = 371 Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 145/378 (38%), Positives = 208/378 (55%), Gaps = 29/378 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K PKD RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MNKPPKDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +GAD +ATGHY R DG+ + + R +D ++DQ+YFL Q+QL + FPLG Sbjct: 118 LSIGADYVATGHYARIEY---RDGEYK--LLRGVDQKKDQTYFLNQLGQEQLSKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQI 252 ++K VR +A++ GL A K DS ICF+ + D K +++ + + I+ L+G++ Sbjct: 173 HLEKAQVRQIAKDAGLATATKKDSTGICFIGER---DFKKFLSSYLPAQPGIMQTLDGEV 229 Query: 253 LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LR 306 G+H+G++ YTIGQR GLG+ GEP FVV KN I+ + +Y Sbjct: 230 KGKHDGVMYYTIGQRHGLGIGGNGEPWFVV--GKNVKENILYVAQGFNNEYLYSTSLIAT 287 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQAC 365 +NW+ D F+C K R Q + V V +DD V V F++ V GQA Sbjct: 288 NVNWVSD----RKPPKSFRCTAKFRYRQPDIGVTVHVMDDDKVEVVFDEPVRAVTPGQAV 343 Query: 366 VFYTSDSNEARVLGGGII 383 VFY N LGGG I Sbjct: 344 VFY----NGEECLGGGTI 357 >gi|303232130|ref|ZP_07318833.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Veillonella atypica ACS-049-V-Sch6] gi|302513236|gb|EFL55275.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Veillonella atypica ACS-049-V-Sch6] Length = 353 Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 136/362 (37%), Positives = 199/362 (54%), Gaps = 18/362 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + VAMSGGVDSS+ AA+L + GY V G+TL L+ S V DA+++CD Sbjct: 5 IAVAMSGGVDSSLTAAMLLKQGYKVFGITLWLWVSGTPYDE-----VPLAVTDAKKMCDF 59 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + H+V D + F V+ F YA G TP PCV CN+ +KF +L+ +LGA + Sbjct: 60 LGIEHHVIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATHMV 119 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + Y D G + + +D +DQSY ++ Q+ L L FPLG K R Sbjct: 120 TGHYAQVN-YNEDTGLYE--LHKGVDPTKDQSYVMYNMNQRILSHLMFPLGGQCKTETRK 176 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA E L +A K DS DICF+ G Y +V G+IV +G+ILG+H G+ NY Sbjct: 177 LAAEYDLPVAKKPDSVDICFLPHGNYQKLVVEEMKTKPKSGNIVTEDGEILGKHTGLFNY 236 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A PL+V+ + + VIVGP + L +R+ N+L D + ++ + Sbjct: 237 TIGQRKGLGIAYKHPLYVIGFNGERNEVIVGPNDRLFTNRMICNFYNFLDDTIHKELKAE 296 Query: 323 GFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 G KIR + +P P + +DD + V F++ + + GQ+ FY N ++LGG Sbjct: 297 G-----KIRYAANPSPCTARILDDDTMEVIFDEPQRAITPGQSVAFY----NGTQLLGGA 347 Query: 382 II 383 +I Sbjct: 348 VI 349 >gi|295399328|ref|ZP_06809310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus thermoglucosidasius C56-YS93] gi|294978794|gb|EFG54390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus thermoglucosidasius C56-YS93] Length = 371 Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 145/378 (38%), Positives = 208/378 (55%), Gaps = 29/378 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K PKD RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MNKPPKDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +GAD +ATGHY R DG+ + + R +D ++DQ+YFL Q+QL + FPLG Sbjct: 118 LSIGADYVATGHYARIEY---RDGEYK--LLRGVDQKKDQTYFLNQLGQEQLSKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQI 252 ++K VR +A++ GL A K DS ICF+ + D K +++ + + I+ L+G++ Sbjct: 173 HLEKAQVRQIAKDAGLATATKKDSTGICFIGER---DFKKFLSSYLPAQPGIMQTLDGEV 229 Query: 253 LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LR 306 G+H+G++ YTIGQR GLG+ GEP FVV KN I+ + +Y Sbjct: 230 KGKHDGVMYYTIGQRHGLGIGGNGEPWFVV--GKNVKENILYVAQGFNNEYLYSTSLIAT 287 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQAC 365 +NW+ D F+C K R Q + V V +DD V V F++ V GQA Sbjct: 288 NVNWVSD----RKPPKSFRCTAKFRYRQPDIGVTVHVMDDDKVEVIFDEPVRAVTPGQAV 343 Query: 366 VFYTSDSNEARVLGGGII 383 VFY N LGGG I Sbjct: 344 VFY----NGEECLGGGTI 357 >gi|67922387|ref|ZP_00515898.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Crocosphaera watsonii WH 8501] gi|67855731|gb|EAM50979.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Crocosphaera watsonii WH 8501] Length = 349 Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 146/367 (39%), Positives = 203/367 (55%), Gaps = 27/367 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV AA L+ GYDVIG+TL L K KG CC+ + + DA +C+ Sbjct: 3 KVVVGLSGGVDSSVAAASLQHQGYDVIGLTLWLM------KGKGQCCS-EGMVDAAFICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140 + ++H++ D + F +I S Y +G TPLPC CNR VKF +L+ + +L D Sbjct: 56 QLGIAHHIVDTRDLFTENIIDYLVSGYESGVTPLPCSQCNRAVKFGPMLAYAQAELNCDR 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R D +R + R +D +DQSYFL+ +Q L FPLG+ KE Sbjct: 116 IATGHYARIDY---DKITQRYQLLRAVDRNKDQSYFLYDLSQDILKGTIFPLGEQTKEET 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQ----QGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 R +A E L A K +SQD+C ++ + D + EG+IV L G++LG H Sbjct: 173 RRIAAEFDLKTASKPESQDLCLIEAHGSMSTFLDQYIKPK-----EGEIVDLEGKVLGTH 227 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G+ +YTIGQRRGLG+A EPL+VV LD +RVIVG R + +NW+ + Sbjct: 228 QGVHHYTIGQRRGLGIAAPEPLYVVKLDAVMNRVIVGNRADGGRSDCTVGRLNWV--SIP 285 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 E A + V+ RS V + + D V + F + + G+ GQA VFY + Sbjct: 286 EPASPITAEVQVRYRSKAVRVTI-IPLEDHRVKLQFNEPQFGITPGQAAVFYDGEI---- 340 Query: 377 VLGGGII 383 VLGGGII Sbjct: 341 VLGGGII 347 >gi|223044127|ref|ZP_03614166.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus capitis SK14] gi|314933788|ref|ZP_07841153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus caprae C87] gi|222442521|gb|EEE48627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus capitis SK14] gi|313653938|gb|EFS17695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus caprae C87] Length = 372 Score = 233 bits (593), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 144/370 (38%), Positives = 208/370 (56%), Gaps = 20/370 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD+RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 4 KDIRVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIA 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC+ I + +Y ++EE + + V F Y G TP P V CN+ +KF L +LGA Sbjct: 61 VCNQIGIPYYAVNFEEEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R + +DG M R +D +DQ+YFL +Q+QL + FP+GD++K Sbjct: 121 DYVATGHYARIRRH--EDGHVE--MLRGVDNNKDQTYFLNQLSQEQLSKVMFPIGDIEKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E L A K DS ICF+ + + + + + A GD+V L+G+ +G+H+G Sbjct: 177 EVRRIAEEQDLATAKKKDSTGICFIGERNFKEFLSQYLP--AQSGDMVTLDGKKMGQHSG 234 Query: 259 IINYTIGQRRGLGVAM-GEPLFVV--YLDKNSSRVIVG-PRESLEVHRIYLREINWLGDG 314 ++ YTIGQR GLG+ G+P FVV LD N V G ++L + + +++ + Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVVGKNLDDNLLYVEQGFHHDALYSDYLIASDFSFVNEN 294 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSN 373 E + GF+C K R Q VFV++ D+ + V F++ + GQA VFY N Sbjct: 295 --EIDLEHGFECTAKFRYRQKDTKVFVKKEDESSIRVTFDQPVRAITPGQAVVFY----N 348 Query: 374 EARVLGGGII 383 E LGG I Sbjct: 349 EEVCLGGATI 358 >gi|312793905|ref|YP_004026828.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181045|gb|ADQ41215.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 360 Score = 233 bits (593), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 133/368 (36%), Positives = 206/368 (55%), Gaps = 15/368 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDARRV 79 +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ + + R+ SCC+ V DARRV Sbjct: 4 KVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETEDELIREKSCCSLTAVDDARRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +++ +YVF+ ++ F+ VI F Y G TP PC+ CNR +KF L LG D Sbjct: 64 AHILDIPYYVFNMKDDFKKEVINYFVDEYIKGRTPNPCIMCNRKIKFELFLKKAMVLGMD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + D R ++ R E+DQ+Y L+ TQ+ L FPLG K+ Sbjct: 124 YIATGHY---AIIEYDKSLCRYLLKRSKAREKDQTYVLYNMTQEMLSKTLFPLGRFSKDE 180 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA + L +A K DSQ+ICF+ Y +++ GI EG V +G ILG+ Sbjct: 181 VRKLAEKFKLPVARKPDSQEICFIPDNDYGSFIEK-ETGIKDEGIYVDTDGNILGKSKAY 239 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 NYTIGQR+GLG++ G+ ++VV + ++V++G + + ++N++ D Sbjct: 240 YNYTIGQRKGLGISTGKRMYVVDIKPEENKVVLGEEGKIFSDGLIAYDLNFIPF----DK 295 Query: 320 VVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + KIR ++++ + ++ V V F + + + GQ+ VFY+ D V+ Sbjct: 296 LESELEVTAKIRYTAKEAKARIIPAQNNKVLVKFYEKQRAITPGQSVVFYSGDI----VV 351 Query: 379 GGGIISGS 386 GGGII + Sbjct: 352 GGGIIEKA 359 >gi|226305865|ref|YP_002765825.1| tRNA uridine-sulfurtransferase [Rhodococcus erythropolis PR4] gi|229493398|ref|ZP_04387187.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodococcus erythropolis SK121] gi|259495836|sp|C0ZXK1|MNMA_RHOE4 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|226184982|dbj|BAH33086.1| probable tRNA uridine-sulfurtransferase [Rhodococcus erythropolis PR4] gi|229319714|gb|EEN85546.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodococcus erythropolis SK121] Length = 370 Score = 233 bits (593), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 149/381 (39%), Positives = 210/381 (55%), Gaps = 31/381 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV+GV L L ++ + R GS CC+ +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVAAGHDVVGVHLAL-STAPGALRTGSRGCCSKEDAGDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ +RF+ VI F +SYAAGETP PC+ CN +KF+ L LG Sbjct: 60 AADVLGIPFYVWDFADRFKEDVIDDFVASYAAGETPNPCLRCNEKIKFTALADRAVALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R +DG ++ R +D ++DQSY L T QL FP+GD KE Sbjct: 120 DAVATGHYARL-----EDG----VLRRAVDADKDQSYVLGVLTADQLSRAMFPIGDTPKE 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLN-GQILGRH 256 +R+ A E GL +A+K DS DICF+ G D + A I + G +V + G++L H Sbjct: 171 QIREEAAERGLAVANKPDSHDICFIPTG---DTRAFLGARIGVRPGSVVDADSGEVLAAH 227 Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G+ +TIGQR+GLGV G P +V ++ + V VG ++L+V I + W Sbjct: 228 DGVHGFTIGQRKGLGVEGPAGDGRPRYVTAIEPETGTVRVGSAKNLDVWAISAQRAIWTS 287 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-----GVYVDFEKSEVGVASGQACVF 367 E V +C V++R+ + DD G+ + + GVA GQA V Sbjct: 288 GQAPEGPV----ECMVQVRAHGGLAQAVAEAVDDGTSGGGISISLREPLTGVAKGQAVVL 343 Query: 368 YTSDSNEA-RVLGGGIISGSK 387 Y DS +VLG G ISG++ Sbjct: 344 YRPDSELGDQVLGSGTISGTE 364 >gi|306835899|ref|ZP_07468893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium accolens ATCC 49726] gi|304568224|gb|EFM43795.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium accolens ATCC 49726] Length = 361 Score = 233 bits (593), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 147/373 (39%), Positives = 200/373 (53%), Gaps = 26/373 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRV 79 MRV+VAMSGGVDSSV AA G+DV+GV L L+ + ++ K CC+ +D DARR+ Sbjct: 1 MRVLVAMSGGVDSSVAAARAVEAGHDVVGVHLALHKDAQQTREKARGCCSLEDSADARRI 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + + YV+D+ E F+ VI F SY+ GETP PC+ CN +KF LL LG D Sbjct: 61 CDKLGIPFYVWDFSEEFKEEVITDFVDSYSRGETPNPCLRCNEKIKFRALLQKGMALGFD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + DDG R R D +DQSY L + ++L FP+GD K Sbjct: 121 AVATGHYAT----LDDDGYMR----RSKDENKDQSYVLGVISAEELDHCFFPIGDTPKPQ 172 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNG 258 +R+ A G A K DS DICF+ G + + + + I L G IV G L H+G Sbjct: 173 IREEAAAHGFSTAKKPDSYDICFIPDG---NTQQFLGSRIGLRPGMIVDQEGTELKEHDG 229 Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 NYTIGQR+GL + A G P +V +D + V VG RE L V I + +L G Sbjct: 230 AWNYTIGQRKGLDIKAPAADGRPRYVTDIDAATGTVTVGAREDLAVTAIRADRLKYLHPG 289 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + D F+C V++R+ VP V R D + ++ ++ GVA GQA V Y Sbjct: 290 MDGD-----FECEVQVRAHGSVVPCIAHVDRAADSMRLELKEPLSGVARGQAAVLYLPSP 344 Query: 373 NEAR--VLGGGII 383 ++ V+G G I Sbjct: 345 DDLGDIVIGSGTI 357 >gi|225851037|ref|YP_002731271.1| tRNA-specific 2-thiouridylase MnmA [Persephonella marina EX-H1] gi|254811456|sp|C0QRH5|MNMA_PERMH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|225646565|gb|ACO04751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Persephonella marina EX-H1] Length = 353 Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 155/368 (42%), Positives = 203/368 (55%), Gaps = 21/368 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MRV V MSGGVDSSV A LLK GYDVIGVTL+L +S S CC+ QD+ DA+RV Sbjct: 1 MRVAVGMSGGVDSSVAALLLKEKGYDVIGVTLKL-SSIVCSNDIQVCCSPQDIKDAKRVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGAD 139 + + HYV D+E+ FR VI F Y G+TP PC CNR VK L V LGAD Sbjct: 60 SYLGIEHYVIDWEDIFREKVINYFVEEYKKGKTPNPCSVCNREVKTGRLAKFVNIVLGAD 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ATGHYI+ + D +++ R D+++DQSYF+ + L L FPL D+ KE Sbjct: 120 KFATGHYIK----IEDHPVYGKVIKRGSDIKKDQSYFMALLERDVLDLLIFPLSDLTKEE 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNG 258 VR +A + + ++ K +S +ICF GK N +A E GDIVH++G+ +G+H G Sbjct: 176 VRKIAEDYKIPVSQKKESFEICFTA-GKTPAEYLLENNLLAFESGDIVHIDGKTVGKHKG 234 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 + YT+GQRRGLGV EPL+V+ D + V+VG RE L + + N+L E Sbjct: 235 LPFYTVGQRRGLGVRWREPLYVIEKDAERNTVVVGEREKLLTDHVSSEDFNFLVP--VEK 292 Query: 319 AVVDGFKCFVKIRSSQDPVP---VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 +G V+ R Q V V ++ N Y FEK E A GQ Y D Sbjct: 293 WKKEGLS--VQGRYRQKAVKIKDVSIEGNRLTAY--FEKPEERFAKGQVLAVYDGDI--- 345 Query: 376 RVLGGGII 383 +LGGGII Sbjct: 346 -LLGGGII 352 >gi|289423552|ref|ZP_06425353.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Peptostreptococcus anaerobius 653-L] gi|289156054|gb|EFD04718.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Peptostreptococcus anaerobius 653-L] Length = 350 Score = 232 bits (592), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 132/370 (35%), Positives = 212/370 (57%), Gaps = 32/370 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++ MSGGVDSSV A LLK++GYDV+GV ++L++ +DV DA VC+ Sbjct: 5 KVLLGMSGGVDSSVAAYLLKKEGYDVVGVNMKLWDRPDE----------KDVEDAISVCE 54 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +V D ++ F+ VI F Y AG TP PCV CN+ +KF DL +LG D + Sbjct: 55 KLDIPFHVIDLQKEFKGKVIENFIKEYEAGHTPNPCVFCNKNIKFGDLFKKAEELGCDYI 114 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY L ++ K + + + +DQ+Y ++ +Q++L + FP+G K+ +R Sbjct: 115 ATGHY---ALIEYNEEKGIYELKKASNSNKDQTYVMYNLSQEKLSKILFPIGKYNKDQIR 171 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVK-----RINAGIALEGDIVHLNGQILGRH 256 ++A+E+GL + +K DSQDICF+ Y +K R+N GI ++ D G LG H Sbjct: 172 EMAKEIGLKVYNKPDSQDICFIPDNNYERFLKEKTNIRVNEGIFVDKD-----GNKLGDH 226 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GII+YTIGQR+GLG+ G+P +V+ ++ + +++G E L + ++ N++ F Sbjct: 227 KGIISYTIGQRKGLGMTFGKPTYVIDINAKDNTIVLGDNEDLFKTELVAKDANFIP---F 283 Query: 317 EDAVVDGFKCF-VKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 + +DG + F KIR S V D+ + V F++++ + GQ+ VFY D Sbjct: 284 DIETLDGTRKFDAKIRYSSSLSKASVTYLGDNRIRVVFDQAQRAITRGQSVVFYDGDC-- 341 Query: 375 ARVLGGGIIS 384 ++GGGII Sbjct: 342 --LVGGGIIE 349 >gi|312877398|ref|ZP_07737363.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor lactoaceticus 6A] gi|311795872|gb|EFR12236.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor lactoaceticus 6A] Length = 360 Score = 232 bits (592), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 206/368 (55%), Gaps = 15/368 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDARRV 79 +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ + + R+ SCC+ V DARRV Sbjct: 4 KVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETEDELIREKSCCSLTAVDDARRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +++ +YVF+ ++ F+ VI F Y G TP PC+ CNR +KF L LG D Sbjct: 64 AHILDIPYYVFNMKDDFKKEVINYFVDEYIKGRTPNPCIMCNRKIKFELFLKKAMVLGMD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + D R ++ R E+DQ+Y L+ TQ+ L FPLG K+ Sbjct: 124 YIATGHY---AIIEYDKSLCRYLLKRSKAREKDQTYVLYNMTQEMLSKTLFPLGRFSKDE 180 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA + L +A K DSQ+ICF+ Y +++ GI EG V G ILG+ Sbjct: 181 VRKLAEKFKLPVARKPDSQEICFIPDNDYGSFIEK-ETGIKDEGIYVDTEGNILGKSKAY 239 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 NYTIGQR+GLG++ G+ ++VV + ++V++G + + + ++N++ D Sbjct: 240 YNYTIGQRKGLGISTGKRMYVVDIKPEENKVVLGEEDKIFSDGLIAYDLNFIPF----DK 295 Query: 320 VVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + K+R ++++ + ++ V V F + + + GQ+ VFY+ D V+ Sbjct: 296 LESELEVTAKVRYTAKEAKARIIPAQNNKVLVKFCEKQRAITPGQSVVFYSGDI----VV 351 Query: 379 GGGIISGS 386 GGGII + Sbjct: 352 GGGIIEKA 359 >gi|317472707|ref|ZP_07932022.1| tRNA methyl transferase [Anaerostipes sp. 3_2_56FAA] gi|316899884|gb|EFV21883.1| tRNA methyl transferase [Anaerostipes sp. 3_2_56FAA] Length = 301 Score = 232 bits (592), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 124/302 (41%), Positives = 178/302 (58%), Gaps = 9/302 (2%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GY+VIGVT+Q++ + G CC V DARRV Sbjct: 4 KVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDEEQELLEENGGCCGLSAVDDARRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +++ +YV ++++ F+ VI F Y G TP PC+ CNR VK+ LL + +GAD Sbjct: 64 AQALDIPYYVMNFKQDFKEHVIDYFIDEYLDGRTPNPCIACNRYVKWESLLKRSLDIGAD 123 Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R +L G R + R E+DQ+Y L+ TQ QL P+G+ K+ Sbjct: 124 YIATGHYARIEKLSNG-----RYALKRSATPEKDQTYALYNLTQNQLSKTLMPVGEYTKD 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A ++ L +A K DSQDICFV G Y D ++ G+ V ++G ILG H G Sbjct: 179 EIREIAEKIHLPVAHKPDSQDICFV-DGSYGDFIEETTGQKIRPGNFVDMDGNILGTHKG 237 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I+ YT+GQRRGLG+++ +P +VV +DK + V++G E L +Y +N + ED Sbjct: 238 IVCYTVGQRRGLGLSLKQPGYVVRIDKERNEVVIGSNEDLMTDTLYGDHVNLMSVSSIED 297 Query: 319 AV 320 + Sbjct: 298 GM 299 >gi|88809139|ref|ZP_01124648.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. WH 7805] gi|88787081|gb|EAR18239.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. WH 7805] Length = 409 Score = 232 bits (592), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 148/397 (37%), Positives = 213/397 (53%), Gaps = 34/397 (8%) Query: 3 VSEATRLNSLDLDK---NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK 59 V+ AT + LD+ P + RV V +SGGVDSS+ AALL G+DV G+TL L + Sbjct: 27 VTAATIAGAEALDRLRHWPGEHRVAVGLSGGVDSSLTAALLVEAGWDVEGLTLWLMSG-- 84 Query: 60 ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119 KG+CCA + + DA +C+ + + H+V D E F+ ++ Y AG TPLPC Sbjct: 85 ----KGACCA-EGLVDAAGICEQLEIPHHVVDSRETFQREIVNGLIEGYQAGITPLPCSR 139 Query: 120 CNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLF 178 CNR VKFS +L ++ G +ATGHY R R DD R + R +D +DQSYFL+ Sbjct: 140 CNRAVKFSPMLRWAQEERGLARIATGHYARLRF---DDSSSRWRLLRGLDARKDQSYFLY 196 Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG 238 TQ+ L + FPLG++ K R A GL A K +SQD+C + + ++A Sbjct: 197 DLTQEVLDRVVFPLGELTKPDTRLEAARHGLRTAAKPESQDLCLADH--HGSMRAFLDAY 254 Query: 239 IAL-EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES 297 + +G+IV +G ++G H+GI ++TIGQR+GLG+A EPL VV LD +RV+V R+ Sbjct: 255 LPPRQGEIVLQDGTVVGEHDGIEHFTIGQRKGLGIAWSEPLHVVRLDAAMNRVVVATRDQ 314 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-------- 349 + INW+ + A K V++R PVP + D Sbjct: 315 AGRDHCVVGAINWV--SIAPPAPGQRQKVHVQVRYRSAPVPAQLTTMDAEASDAEAERPH 372 Query: 350 ---VDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 +DF++ + + GQA VFY D+ VLGGG+I Sbjct: 373 RCRLDFDEPQFSITPGQAAVFYDGDA----VLGGGLI 405 >gi|118617523|ref|YP_905855.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium ulcerans Agy99] gi|166235069|sp|A0PPW5|MNMA_MYCUA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205822174|sp|B2HIE6|MNMA_MYCMM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|118569633|gb|ABL04384.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase TrmU [Mycobacterium ulcerans Agy99] Length = 363 Score = 232 bits (592), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 144/379 (37%), Positives = 200/379 (52%), Gaps = 24/379 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+V+ AMSGGVDSSV AA + G+DV+GV L L ++ + R GS CC+ +D DARR Sbjct: 1 MKVLAAMSGGVDSSVAAARMVDAGHDVVGVHLAL-STAPGALRTGSRGCCSKEDASDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ ERF+ VI F SSYA GETP PC+ CN+ +KFS L + LG Sbjct: 60 VADVLGIPFYVWDFAERFKEDVIDDFVSSYARGETPNPCIRCNQRIKFSALYAKALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 DV+ TGHY R +G+ RR +D ++DQSY L T +QL FP+GD K Sbjct: 120 DVVVTGHYARL-----SEGRLRRA----VDQDKDQSYVLAVLTAEQLRHAMFPIGDTPKP 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHN 257 +R+ A GL +ADK DS DICF+ G + +RI G +V G +L H+ Sbjct: 171 QIREEASRRGLAVADKPDSHDICFIPSGNTQTFLGERIG---VRRGTVVDAAGAVLATHD 227 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+ +TIGQR+GLG+ G P +V +D + V VG L+VH + R + Sbjct: 228 GVHGFTIGQRKGLGIPGPGPDGRPRYVTAIDAETGTVRVGDVADLQVHALTGRAPIFTAG 287 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 A +C V++R+ + + D + V GVA GQ V Y D + Sbjct: 288 ----TAPTGPLECAVQVRAHGETTSAVAELVGDELSVRLHSPLRGVARGQTLVLYRPDPD 343 Query: 374 EARVLGGGIISGSKRSDAV 392 VLG I+ + V Sbjct: 344 GDEVLGSATITATSACSPV 362 >gi|284052528|ref|ZP_06382738.1| tRNA-specific 2-thiouridylase MnmA [Arthrospira platensis str. Paraca] gi|291571991|dbj|BAI94263.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Arthrospira platensis NIES-39] Length = 359 Score = 232 bits (592), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 137/372 (36%), Positives = 207/372 (55%), Gaps = 30/372 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++VV +SGGVDSS AA+L GY+V+G+TL L + KG CC+ + + DA +C+ Sbjct: 3 KIVVGLSGGVDSSAAAAILHHQGYEVVGLTLWLM------RGKGQCCS-EGMVDAAHICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140 + + HY+ D + F+ +I Y AG TPLPC CNR VKF +L + +L + Sbjct: 56 QLGIPHYIVDSRDLFQTHIIDYLVEGYGAGITPLPCSQCNRAVKFGPMLGYASTELNINR 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R D R + R +D +DQSYFL+ TQ L + FPLG++ K Sbjct: 116 IATGHYARVSYNSQCD---RHQLKRAVDRTKDQSYFLYDLTQDILGAVVFPLGEVPKSET 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R +A + L ADK +SQD+C V+ G + + G +G+IV G++LG H+GI Sbjct: 173 RRIAAQYNLKTADKPESQDLCLVEANGSMRAFLDKYITG--KKGEIVDPEGRVLGEHDGI 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQRRGLG++ EPL+V+ +D +RV+VG R+ + +R +NW+ + Sbjct: 231 HHYTIGQRRGLGISAPEPLYVLSIDPGRNRVVVGDRDRMTQTECTIRRVNWVSIAPPSEP 290 Query: 320 VVDGFKCFVKIRSSQDPVPVFV--------QRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + + V+IR P+PV V + V + F++ G+ GQA V+Y+ D Sbjct: 291 I----RAEVQIRYRSKPLPVTVVPLSSEPDPQIGTRVRLIFDEPIFGITPGQAAVWYSED 346 Query: 372 SNEARVLGGGII 383 +LGGG+I Sbjct: 347 ----LLLGGGVI 354 >gi|294508524|ref|YP_003572583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1 [Salinibacter ruber M8] gi|294344853|emb|CBH25631.1| Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1 [Salinibacter ruber M8] Length = 383 Score = 232 bits (592), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 144/374 (38%), Positives = 203/374 (54%), Gaps = 21/374 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS---CCAGQDVYD 75 K RV+VAMSGGVDSSV A LLK GYDV+G+T++ ++ + R G CC+ + + D Sbjct: 3 KKGRVLVAMSGGVDSSVTAVLLKERGYDVVGLTMKTWDYSTSGGRDGKEVGCCSIESMND 62 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 AR V H+V D E F + VI F Y +G TP PCV CN +K+ LL Sbjct: 63 ARVVATEHGFPHFVVDLREEFGDWVIERFTDEYLSGRTPNPCVLCNTHIKWDALLQRADD 122 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L + +ATGHY R DD + R ++ R +D +DQSY L+ Q+ L FPLG Sbjct: 123 LDCEYIATGHYANVRY---DDERDRYLLSRGLDRNKDQSYALWGLPQEHLARSIFPLGAY 179 Query: 196 KKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQ 251 +K +R++A E GLD +ADK DS +ICF+ Y +K G+ E G V +G Sbjct: 180 EKPEIREMAAEFGLDNVADKPDSYEICFIPDNDYPRFLKDRVDGLEEEVSGGTFVLSDGT 239 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 ++G H+G YTIGQRRGL +A+GE ++V +D ++ + VGPRE L + EIN Sbjct: 240 VVGEHDGYPFYTIGQRRGLDLALGERVYVTDIDPETNTITVGPREELMEQTLTAHEIN-- 297 Query: 312 GDGLFEDAVVDGFK-CFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYT 369 L + +DG + + IR + D Q ++D + V F + + + GQ+ V Y Sbjct: 298 ---LVKYPELDGERPAWGTIRYNDDGAGCLAWQPDEDTLKVAFAEPKRAITPGQSLVLYE 354 Query: 370 SDSNEARVLGGGII 383 D VLGGG I Sbjct: 355 DDD----VLGGGWI 364 >gi|51893527|ref|YP_076218.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Symbiobacterium thermophilum IAM 14863] gi|81388362|sp|Q67LS2|MNMA_SYMTH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|51857216|dbj|BAD41374.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Symbiobacterium thermophilum IAM 14863] Length = 390 Score = 232 bits (591), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 144/393 (36%), Positives = 204/393 (51%), Gaps = 31/393 (7%) Query: 7 TRLNSLDLDKN----PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62 TR +L + K P RV++AMSGGVDSSV AALL GY+VIGVT+ + + Sbjct: 10 TRRATLYVTKEGGGRPVAKRVLMAMSGGVDSSVAAALLVEQGYEVIGVTMNTWTDDIPEE 69 Query: 63 ----RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118 + CC+ V DAR V + + +YV +++ +F VI F Y G TP PC+ Sbjct: 70 IQMNQHSGCCSLAAVEDARSVAHKLGIPYYVMNFQGQFARTVIDYFIEEYTRGRTPNPCI 129 Query: 119 DCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGK--RRRIMCRPMDLERDQSYF 176 CNR VKFS L +QL D +ATGHY +G D + R ++ + D +DQ+Y Sbjct: 130 ACNRYVKFSAFLEKAKQLECDYVATGHYA----VIGQDDRFPGRWLLGKSADARKDQTYV 185 Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN 236 L TQ+ L FP+G ++K VR LA + G ADK DSQ+ICFV Y +K Sbjct: 186 LHNLTQEALAHTLFPVGHLQKSEVRALAAKYGFVTADKPDSQEICFVYDNDYGRFLKERA 245 Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE 296 + G I++ G+++G+H G+ YTIGQR+GLG+ P++VV LD + VIVG E Sbjct: 246 PEAIVPGPILNTRGEVIGQHQGLPLYTIGQRKGLGLTTPRPVYVVDLDVERNAVIVGEDE 305 Query: 297 SLEVHRIYLREINWLGDGLFEDAVVDGF----KCFVKIRSSQDPVPVFVQR-NDDGVYVD 351 + ++NW+ + G +C KIR + +D V V+ Sbjct: 306 ETYRGGLVASDLNWI--------AIPGLTFPRRCRAKIRRMAPEAECTIYPIGEDAVRVE 357 Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ + + GQA VFY D VLGGG I Sbjct: 358 FDRPQRAITPGQAVVFYDGDW----VLGGGTIE 386 >gi|294501356|ref|YP_003565056.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus megaterium QM B1551] gi|294351293|gb|ADE71622.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus megaterium QM B1551] Length = 370 Score = 232 bits (591), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 144/375 (38%), Positives = 207/375 (55%), Gaps = 23/375 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K+PKD RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MTKSPKDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 NDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY R DG+ + M R +D +DQ+YFL Q QL + FP+G Sbjct: 118 MTLGADYLATGHYARVAY---RDGEYK--MLRGVDGNKDQTYFLNQLGQDQLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR++A+E GL A K DS ICF+ + + + + + A G + L+G++ Sbjct: 173 EIEKSKVREIAKEAGLATATKKDSTGICFIGERNFKEFLSQYLP--AQPGVMQTLDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVG-PRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP FVV L+KN V G E L + ++ Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGSGEPWFVVGKDLEKNVLYVDQGFHNELLYSTSLTATNVS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368 W+ + + + C K R Q V V++ +DD + V F + + GQA VFY Sbjct: 291 WVSERDWSSPMT----CTAKFRYRQTDSAVTVEKVDDDTIKVIFAEPVRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGII 383 D LGG I Sbjct: 347 KDD----ECLGGATI 357 >gi|138896133|ref|YP_001126586.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus thermodenitrificans NG80-2] gi|196250086|ref|ZP_03148780.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus sp. G11MC16] gi|166234855|sp|A4IR87|MNMA_GEOTN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|134267646|gb|ABO67841.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus thermodenitrificans NG80-2] gi|196210270|gb|EDY05035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus sp. G11MC16] Length = 371 Score = 232 bits (591), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 144/375 (38%), Positives = 200/375 (53%), Gaps = 23/375 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MNKAPHETRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F + Y AG TP P V CN+ +KF L Sbjct: 58 EDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +GAD +ATGHY R DG+ + M R D +DQ+YFL Q QL + FP+G Sbjct: 118 MSIGADYVATGHYARVEF---RDGEYK--MLRGADPNKDQTYFLNQLGQAQLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR +A+E GL A K DS ICF+ + + + + A G + L+G++ Sbjct: 173 HLQKADVRRIAKEAGLATAGKKDSTGICFIGERDFKEFLSHYLP--AQPGVMKTLDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 GRH+G++ YTIGQR GLG+ GEP FVV D + + V E L + ++N Sbjct: 231 GRHDGVMYYTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVN 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W+ D E F+C K R Q + V V DG V F+ V GQA VFY Sbjct: 291 WVSDRKPEAP----FRCTAKFRYRQPDIGVMVHPLADGKAEVVFDAPARAVTPGQAVVFY 346 Query: 369 TSDSNEARVLGGGII 383 D LGGG I Sbjct: 347 NGDE----CLGGGTI 357 >gi|149175981|ref|ZP_01854598.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Planctomyces maris DSM 8797] gi|148845135|gb|EDL59481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Planctomyces maris DSM 8797] Length = 369 Score = 232 bits (591), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 138/378 (36%), Positives = 201/378 (53%), Gaps = 29/378 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS---------------KRKGS 66 RVV+AMSGGVDSS A LL GY+VIG+ ++ + + + K Sbjct: 4 RVVLAMSGGVDSSAAAHLLLEQGYEVIGLFMRSGATEETACAIEDKNSLPVLNLKAHKQG 63 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 CC+ D DARRV D +++ + ++++ F + FA Y AG TP PCV CN +KF Sbjct: 64 CCSASDAADARRVADMLDIPFHALNFKDAF-GRIKDYFADEYLAGRTPNPCVMCNNWLKF 122 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L Q+GA ++TGHY ++L D + + + R +D +DQSY LF + L Sbjct: 123 GKLWEFAEQVGASYISTGHY--AQLTSLPD-ETQPALIRGLDRSKDQSYVLFGINRGLLD 179 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 + FP+G K +R++A E GL A+K DSQ+ICF+ YF + R G++V Sbjct: 180 KIIFPVGGFVKPEIREMAGEAGLRTANKPDSQEICFIPDNDYFGFLNRYRGPQETAGEMV 239 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 +G ++G+H G NYTIGQR+ LGVA G P FV+ ++ ++RV++G R+ L + + Sbjct: 240 DTSGNVVGQHTGYENYTIGQRKRLGVAFGTPRFVIKIEPETNRVVIGTRDELARNSLEAN 299 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQAC 365 NWL D + +C +IR V+ ++D V F+ E GVA GQA Sbjct: 300 RSNWLIDDPGSE-----IRCQAQIRYQHKEADCLVEILDEDRFRVTFDDPEYGVAPGQAV 354 Query: 366 VFYTSDSNEARVLGGGII 383 V Y D RVLGGG I Sbjct: 355 VLYDED----RVLGGGWI 368 >gi|56421098|ref|YP_148416.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus kaustophilus HTA426] gi|81557817|sp|Q5KWT8|MNMA2_GEOKA RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|56380940|dbj|BAD76848.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Geobacillus kaustophilus HTA426] Length = 371 Score = 232 bits (591), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 145/375 (38%), Positives = 200/375 (53%), Gaps = 23/375 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MNKAPHETRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F + Y AG TP P V CN+ +KF L Sbjct: 58 EDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +GAD +ATGHY R DG+ + M R D +DQ+YFL Q QL + FP+G Sbjct: 118 MSIGADYIATGHYARVEF---RDGEYK--MLRGADPNKDQTYFLNQLGQAQLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR +A+E GL A K DS ICF+ + + + + A G + L+G++ Sbjct: 173 HLQKADVRRIAKEAGLATAGKKDSTGICFIGERDFKEFLSHYLP--AQPGVMKTLDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 GRH+G++ YTIGQR GLG+ GEP FVV D + + V E L + ++N Sbjct: 231 GRHDGVMYYTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVN 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368 W+ D E F+C K R Q V V V D G V F+ V GQA VFY Sbjct: 291 WVSDRKPEAP----FRCTAKFRYRQPDVGVTVHPLADGGAEVVFDAPARAVTPGQAVVFY 346 Query: 369 TSDSNEARVLGGGII 383 N LGGG I Sbjct: 347 ----NGEECLGGGTI 357 >gi|242242895|ref|ZP_04797340.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis W23144] gi|242233670|gb|EES35982.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis W23144] Length = 372 Score = 232 bits (591), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 206/382 (53%), Gaps = 44/382 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD+RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 4 KDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIA 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC+ I + +Y ++EE++ + V F Y G TP P V CN+ +KF L +LGA Sbjct: 61 VCNQIGIPYYAVNFEEQYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R + +DG M R +D +DQ+YFL +Q+QL + FP+GD++K Sbjct: 121 DYVATGHYARIRRH--EDGHVE--MLRGVDNNKDQTYFLNQLSQEQLSKVMFPIGDVEKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E L A K DS ICF+ + + + + + A G+++ LNG+ +G+H+G Sbjct: 177 EVRRIAEEQNLATAKKKDSTGICFIGERNFKEFLSQYLP--AQSGEMLTLNGKKMGQHSG 234 Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++ YTIGQR GLG+ G+P FVV + N + + V E + D L+ Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVVGKNLNDNILYV--------------EQGFHHDALYS 280 Query: 318 DAVV---------------DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361 D ++ GF+C K R Q V+VQR N++ + V F + + Sbjct: 281 DYLIASDFSFVNPSEIDLEKGFECTAKFRYRQKDTKVYVQRENENSIRVTFAEPVRAITP 340 Query: 362 GQACVFYTSDSNEARVLGGGII 383 GQA VFY N+ LGG I Sbjct: 341 GQAVVFY----NQEVCLGGATI 358 >gi|328554370|gb|AEB24862.1| tRNA-specific 2-thiouridylase MnmA [Bacillus amyloliquefaciens TA208] Length = 371 Score = 232 bits (591), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 147/375 (39%), Positives = 203/375 (54%), Gaps = 22/375 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P+D RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVIRVCNQIGIPYYAVNFEKQYWEKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY R V G R M R +D +DQ+YFL Q+QL + FP+G Sbjct: 118 LSLGADYLATGHYAR----VDRSGDTVR-MLRGLDENKDQTYFLNQLNQEQLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 D++K VR++A+E L A K DS ICF+ + + + + A GD++ ++G++ Sbjct: 173 DLQKSRVREIAKEAELATAAKKDSTGICFIGERNFKTFLSQYLP--AQPGDMMTMDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVH-RIYLREIN 309 GRH+G++ YTIGQR GLG+ GEP F V L+KN V G L +I I+ Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368 W GL + + C K R Q+ V V+ D + F+K V GQA VFY Sbjct: 291 WTRPGLMDGGEM---TCTAKFRYRQEDHKVTVKMTGADEAEIIFDKQVRAVTPGQAVVFY 347 Query: 369 TSDSNEARVLGGGII 383 + LGGG I Sbjct: 348 DGE----ECLGGGTI 358 >gi|145224833|ref|YP_001135511.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium gilvum PYR-GCK] gi|315445164|ref|YP_004078043.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium sp. Spyr1] gi|189040505|sp|A4TDZ4|MNMA_MYCGI RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|145217319|gb|ABP46723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium gilvum PYR-GCK] gi|315263467|gb|ADU00209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium sp. Spyr1] Length = 357 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 150/373 (40%), Positives = 198/373 (53%), Gaps = 30/373 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+VAMSGGVDSSV AA + G+DV+GV L L +S + R GS CC+ +D DARR Sbjct: 1 MRVLVAMSGGVDSSVAAARMVAAGHDVVGVHLAL-SSAPGTLRTGSRGCCSKEDAGDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ +RF+ VI F SYA GETP PCV CN +KFS L S LG Sbjct: 60 VADVLGIPFYVWDFADRFKEDVIDDFVESYARGETPNPCVRCNERIKFSALASRALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY R DG+ RR +D ++DQSY L T +QL FP+GD K Sbjct: 120 DALATGHYARLA-----DGRLRRA----VDHDKDQSYVLAVLTAEQLRHAVFPIGDTPKA 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257 +R+ A +GL +ADK+DS DICF+ G D + A I + G++V G +L H+ Sbjct: 171 QIREEAARLGLAVADKADSHDICFIPSG---DTKAFLGARIGVRRGNVVDAAGTVLAEHD 227 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+ +TIGQR+GLG+ G P +V +D + V VG LEV + GD Sbjct: 228 GVHGFTIGQRKGLGIPGPGPDGSPRYVTGIDAQTGTVHVGDVADLEV-------TSLQGD 280 Query: 314 G-LFEDAVVDG--FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 +F V +C V++R+ + D + V GVA GQ V Y Sbjct: 281 APVFTSGVAPTGPLECVVQVRAHGGVADAVAELRGDTLEVSLRTPLRGVAPGQTLVLYRR 340 Query: 371 DSNEARVLGGGII 383 D VL I Sbjct: 341 DPAGDEVLASATI 353 >gi|170758983|ref|YP_001788227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A3 str. Loch Maree] gi|205810606|sp|B1KZJ2|MNMA2_CLOBM RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|169405972|gb|ACA54383.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A3 str. Loch Maree] Length = 353 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 122/363 (33%), Positives = 205/363 (56%), Gaps = 19/363 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V +AMSGGVDSSV A +LK GY+VIG+ + L+ + C DARRV + Sbjct: 6 VALAMSGGVDSSVSAYILKERGYEVIGIYMDLWRDEREE-----YCNKSAAEDARRVAEK 60 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 +++ ++ + + F+ VI F Y +G TP PCV CN+T+KF + ++ GAD +A Sbjct: 61 LDIPFHIINIGKEFKANVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEFGADFMA 120 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ RR+++ + D ++DQ+Y ++ Q QL P G+ +KE +R+ Sbjct: 121 TGHYCKI-----EERNRRKVIVKAEDDKKDQTYMMYNLKQYQLERTIMPCGEYRKEHIRE 175 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A +GLD+ +K DSQ+ICF+ + +KR EG+ V G+I+G+H GII Y Sbjct: 176 IAENIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKSKVSEGNFVDKAGKIIGKHKGIIYY 235 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A+G+P +V+ ++ ++ V++G E + + +++N++ E ++ Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGDEEDIFHTELIAKDVNFIPFDKLEKSM-- 293 Query: 323 GFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + K+R S P + ++ V V F+ + + GQ+ V Y D ++GGG Sbjct: 294 --ELEAKVRYSAKPSKATIIPLGNNKVKVVFQNKQRAITKGQSVVLYDKDM----LVGGG 347 Query: 382 IIS 384 II Sbjct: 348 IIE 350 >gi|326800569|ref|YP_004318388.1| tRNA-specific 2-thiouridylase mnmA [Sphingobacterium sp. 21] gi|326551333|gb|ADZ79718.1| tRNA-specific 2-thiouridylase mnmA [Sphingobacterium sp. 21] Length = 362 Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 137/376 (36%), Positives = 205/376 (54%), Gaps = 28/376 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDA 76 K R++VAMSGGVDSSV A +L GY+VIG+T++ Y S S ++ CC+ + DA Sbjct: 3 KHGRILVAMSGGVDSSVAAVMLHEQGYEVIGLTMKTWDYASSGGSTKETGCCSLDSINDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + HY+ D + F + VI F Y AG TP PCV CN +K+ LL +L Sbjct: 63 RALAVGYGFPHYILDIRDEFGDFVINNFVDEYLAGRTPNPCVLCNTHIKWEALLKRADKL 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 + +ATGHY RL D G R ++ + D +DQSY L+ +Q+ L +FPLG Sbjct: 123 DCEFIATGHYANIRLQ--DSG--RYVISKGRDEHKDQSYVLWGVSQKNLARTKFPLGSFT 178 Query: 197 KESVRDLAREMG-LDIADKSDSQDICFVQQGKY--------FDVVKRINAGIALEGDIVH 247 K +R +A EMG +++A+KS+S +ICFV Y D+ +RI A G+ + Sbjct: 179 KAEIRQMALEMGQVELANKSESYEICFVPDNDYRSFLRHRVEDIDERIGA-----GNFIL 233 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 +G ++G+H G YTIGQR+GLG+A+G P+FV+ + S+ V++G E L+ Y+R Sbjct: 234 SDGTVVGKHAGYPYYTIGQRKGLGIALGRPVFVIQILPESNTVVLGSEEELQKDTAYVRN 293 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 IN + + + + + KIR + + + VDFE G+A GQ+ VF Sbjct: 294 INLIK----YEHIPEPMEAVTKIRYKDAGAISRIVEENGSMKVDFEHYVKGIAPGQSAVF 349 Query: 368 YTSDSNEARVLGGGII 383 Y + +LGGG + Sbjct: 350 YEGND----LLGGGFL 361 >gi|297529272|ref|YP_003670547.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus sp. C56-T3] gi|297252524|gb|ADI25970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus sp. C56-T3] Length = 371 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 145/375 (38%), Positives = 200/375 (53%), Gaps = 23/375 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MNKAPHETRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F + Y AG TP P V CN+ +KF L Sbjct: 58 EDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +GAD +ATGHY R DG+ + M R D +DQ+YFL Q QL + FP+G Sbjct: 118 MSIGADYIATGHYARVEF---RDGEYK--MLRGADPNKDQTYFLNQLGQAQLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR +A+E GL A K DS ICF+ + + + + A G + L+G++ Sbjct: 173 HLQKADVRRIAKEAGLATAGKKDSTGICFIGERDFKEFLSHYLP--ARPGVMKTLDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 GRH+G++ YTIGQR GLG+ GEP FVV D + + V E L + ++N Sbjct: 231 GRHDGVMYYTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVN 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368 W+ D E F+C K R Q V V V D G V F+ V GQA VFY Sbjct: 291 WVSDRKPEAP----FRCTAKFRYRQPDVGVTVHPLADGGAEVVFDAPARAVTPGQAVVFY 346 Query: 369 TSDSNEARVLGGGII 383 N LGGG I Sbjct: 347 ----NGEECLGGGTI 357 >gi|225848332|ref|YP_002728495.1| tRNA-specific 2-thiouridylase MnmA [Sulfurihydrogenibium azorense Az-Fu1] gi|225644575|gb|ACN99625.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfurihydrogenibium azorense Az-Fu1] Length = 351 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 136/366 (37%), Positives = 210/366 (57%), Gaps = 22/366 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSS A +LK+ GY VIG+TL+L + S K CC+ +D+ DA++V Sbjct: 3 KVVVGLSGGVDSSTAAFILKQQGYQVIGITLKLSEVDQCSLDKQVCCSTKDILDAKKVAS 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + HYV D+++ F+ VI F Y +G TP PC CNR VK L ++ L AD Sbjct: 63 FLGIPHYVIDWQDIFKEKVIDYFIREYQSGYTPNPCSICNREVKTGLLAKYAKKVLKADF 122 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHYI++ G+ +++ R +D +DQSYF+ ++ + L FPLGD KE V Sbjct: 123 FATGHYIKTDFLDGE-----KVIKRGVDTSKDQSYFMALVEKEVIDMLIFPLGDFTKEEV 177 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGI 259 R +A E + ++ KS+S +ICF + K + GI L+ GDIVH++G++LG+H G+ Sbjct: 178 RKIAYENKIPVSQKSESFEICFTAGKTPEEYFKSL--GIPLKIGDIVHVSGKVLGKHKGL 235 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YTIGQR+GLG+ EPL+V+ D + +IVG +E L + + N+L Sbjct: 236 EAYTIGQRKGLGIRWKEPLYVIDKDPIKNTIIVGEKEHLLTDTVVAKNFNFL-------V 288 Query: 320 VVDGFKCF-VKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 ++ +K V+ R Q P+ V + + + + F++ + +A GQ Y D+ + Sbjct: 289 PIEKWKNIQVQGRYRQKPIEVRDFHYDGELLKITFKEKQQKMAPGQILAVYQDDT----L 344 Query: 378 LGGGII 383 LGGG+I Sbjct: 345 LGGGVI 350 >gi|317125511|ref|YP_004099623.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Intrasporangium calvum DSM 43043] gi|315589599|gb|ADU48896.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Intrasporangium calvum DSM 43043] Length = 365 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 148/376 (39%), Positives = 201/376 (53%), Gaps = 24/376 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRVV AMSGGVDS+V AA + G+DV+GV L L S A+ R+ + CC +D DARR Sbjct: 1 MRVVAAMSGGVDSAVAAARMLDAGHDVVGVHLALSQS-AATLRESARGCCTIEDAGDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D ERFR V+ F + YA G TP PC+ CN +KF+ LL LG Sbjct: 60 VADVLGIPFYVWDMAERFRRDVVEDFTAEYARGRTPNPCLRCNEKIKFAALLDKAIALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + G G RR + R +D +DQSY L +QL FPLGD K Sbjct: 120 DAVATGHYAQVVEVPGVGGGVRRELHRAVDSAKDQSYVLGVLDAEQLARAFFPLGDTTKP 179 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQILGR 255 +R+ A E G +A K DS DICF+ G R G AL GDIV +G +LGR Sbjct: 180 QIREEAAERGFFVARKPDSHDICFIPDGD-----TRAWLGRALGEAPGDIVDTDGAVLGR 234 Query: 256 HNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 H G YT+GQR+GLG++ G+P +VV + ++++V+VG + L V I W Sbjct: 235 HAGAFGYTVGQRKGLGLSRPAPDGQPRYVVEVRTDTNQVVVGTADLLGVDAITGDHARWC 294 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 G A + ++R+ VP + D V V ++ GVA GQ+ V Y Sbjct: 295 G-----PAPAGVVRVGAQVRAHGAEVPATAWADGDRVEVRLDERIRGVAPGQSVVLYEG- 348 Query: 372 SNEARVLGGGIISGSK 387 RV+G I+ ++ Sbjct: 349 ---TRVVGSATIASAR 361 >gi|329724654|gb|EGG61160.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis VCU144] Length = 372 Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 205/382 (53%), Gaps = 44/382 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD+RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 4 KDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIA 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC+ I + +Y ++EE++ + V F Y G TP P V CN+ +KF L +LGA Sbjct: 61 VCNQIGIPYYAVNFEEQYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R + DDG M R +D +DQ+YFL +Q+QL + FP+GD++K Sbjct: 121 DYVATGHYARIRRH--DDGHVE--MLRGVDNNKDQTYFLNQLSQEQLSKVMFPIGDIEKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E L A K DS ICF+ + + + + + A G+++ LNG+ +G+H+G Sbjct: 177 EVRRIAEEQNLATAKKKDSTGICFIGERNFKEFLSQYLP--AQSGEMLTLNGKKMGQHSG 234 Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++ YTIGQR GLG+ G+P FVV + N + + V E + D L+ Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVVGKNLNDNVLYV--------------EQGFHHDALYS 280 Query: 318 DAVV---------------DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361 D ++ GF+C K R Q V VQR N++ + V F + + Sbjct: 281 DYLIASDYSFVNPSEIDLEKGFECTAKFRYRQKDTKVNVQRENENSIRVTFAEPVRAITP 340 Query: 362 GQACVFYTSDSNEARVLGGGII 383 GQA VFY N+ LGG I Sbjct: 341 GQAVVFY----NQEVCLGGATI 358 >gi|159036753|ref|YP_001536006.1| tRNA-specific 2-thiouridylase MnmA [Salinispora arenicola CNS-205] gi|205816910|sp|A8M5E1|MNMA_SALAI RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|157915588|gb|ABV97015.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salinispora arenicola CNS-205] Length = 360 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 148/372 (39%), Positives = 203/372 (54%), Gaps = 24/372 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 +RV+ AMSGGVDS+V AA G+DV GV L L + + + R G+ CC +D DARR Sbjct: 4 VRVLAAMSGGVDSAVAAARAVAAGHDVTGVHLALARNPQ-TYRTGARGCCTLEDSRDARR 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D I + YV+D ERF+ V+ F + YAAG TP PC+ CN +KF+ +L LG Sbjct: 63 AADVIGIPFYVWDMAERFQADVVDDFVAEYAAGRTPNPCLRCNEKIKFAAVLDRAVALGF 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGH+ R +G DG ++ R +DL +DQSY L T++QL FPLGD K Sbjct: 123 DAVVTGHHAR----LGADG----LLRRSVDLAKDQSYVLGVLTREQLGRSMFPLGDSTKT 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIV-HLNGQILGRH 256 VR A GL +ADK DS DICFV G + +R+ A GD+V G ++GRH Sbjct: 175 QVRAEATGRGLTVADKPDSHDICFVADGDTRGFLAERLG---ATPGDVVDSSTGAVVGRH 231 Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G YT+GQRRGL + G P +V+ + ++ V VGP E+L V ++ + W G Sbjct: 232 TGAYAYTVGQRRGLHLDRPAPDGRPRYVLSITPKTNTVTVGPAEALAVSQVRAQRPVWTG 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 D + +C V++R+ D VP V DG+ + + GVA+GQA V Y D Sbjct: 292 GPRPADPI----ECEVQLRAHGDVVPATVAVTGDGLRAELHRPVRGVAAGQAIVAYRPDP 347 Query: 373 NEARVLGGGIIS 384 VLG I+ Sbjct: 348 GGDVVLGSATIA 359 >gi|327543019|gb|EGF29466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodopirellula baltica WH47] Length = 399 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 146/396 (36%), Positives = 206/396 (52%), Gaps = 46/396 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR------------------ 63 RVV+AMSGGVDSSV A LL RDG++VIGV ++ + A+ R Sbjct: 3 RVVLAMSGGVDSSVAAHLLLRDGHEVIGVFMRHGEASAAACRIDSDEPQNANPLNLPVLG 62 Query: 64 ----------KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET 113 K CC+ D DARRV ++ + Y D +E FR ++ F Y A T Sbjct: 63 DSAGGKRADHKQGCCSATDAADARRVAMSMGIPFYSLDLQEDFRK-IVDYFVDDYLAART 121 Query: 114 PLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQ 173 P PCV CN +KF L + A+ +ATGHY R V +G R + R +D +DQ Sbjct: 122 PNPCVKCNHWIKFGRLFDYADGVDAEFVATGHYAR---MVHSNG--RSELHRGLDGHKDQ 176 Query: 174 SYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK 233 SY LF +L + P+GD K +R++A +GL ++DK DSQ+ICFV QG + D VK Sbjct: 177 SYALFGIDPARLSRMMLPVGDFTKPEIREMATSLGLGVSDKKDSQEICFVTQGHHSDFVK 236 Query: 234 --RINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVI 291 R A G+IV G+++G H G +TIGQR+ LGVAMGEP FV+ ++ ++ RV+ Sbjct: 237 SRRPEMVGATAGEIVTTGGKVVGEHKGFEAFTIGQRKRLGVAMGEPHFVIRIEPDTRRVV 296 Query: 292 VGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP---VFVQRNDDGV 348 +G E L + + NW + + + D ++IR + P P V + + Sbjct: 297 IGRAEELLRPGLVADQCNWF---VTREELADAQSVGIQIRYNGQPHPGHVVMDGSDPTRM 353 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 V F+ + VA GQA V Y + RVLGGG I+ Sbjct: 354 KVMFDDPQAAVAPGQAAVVYDGE----RVLGGGWIT 385 >gi|296171256|ref|ZP_06852660.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894224|gb|EFG73981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 358 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 148/377 (39%), Positives = 204/377 (54%), Gaps = 32/377 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+++ AMSGGVDSSV AA + G+DV+GV L L +S + R GS CC+ +D DA R Sbjct: 1 MKILAAMSGGVDSSVAAARMVDAGHDVVGVHLAL-SSAPGALRTGSRGCCSKEDASDASR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ ERF+ VI F SSYA GETP PCV CN+ +KFS L + LG Sbjct: 60 VADVLGIPFYVWDFAERFQADVIDDFVSSYARGETPNPCVRCNQRIKFSALSAKALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R G R R R +D ++DQSY L T +QL FP+GD K Sbjct: 120 DTVATGHYARL------SGGRLR---RAVDHDKDQSYVLAVLTAEQLRHATFPIGDTPKA 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257 +R A GL +A K DS DICF+ G D + IA+ G +V +G +L +H+ Sbjct: 171 QIRAEAARRGLAVAAKPDSHDICFIPSG---DTRAFLGERIAVRRGAVVGADGAVLAQHD 227 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG- 312 G+ +T+GQR+GLG+A G P +V +D +++ V VG L+V + RE + Sbjct: 228 GVHGFTVGQRKGLGIAGPGPDGRPRYVTEIDADTATVRVGDAADLDVLELRGREPVFTAG 287 Query: 313 ---DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 GL E C V++R+ + P + D + V GVA GQ V Y Sbjct: 288 RPPSGLVE--------CAVQVRAHGETAPAVAELVGDELIVRLRVPLRGVARGQTLVLYR 339 Query: 370 SDSNEARVLGGGIISGS 386 D + VLG I+G+ Sbjct: 340 PDPDGDEVLGSATIAGT 356 >gi|183220730|ref|YP_001838726.1| tRNA-specific 2-thiouridylase MnmA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910831|ref|YP_001962386.1| tRNA-specific 2-thiouridylase MnmA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|205816873|sp|B0SPC6|MNMA_LEPBP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205816879|sp|B0SG84|MNMA_LEPBA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|167775507|gb|ABZ93808.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779152|gb|ABZ97450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 380 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 136/365 (37%), Positives = 205/365 (56%), Gaps = 15/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDARRV 79 +++VAMSGGVDS+V A LL GYDVIGV L+ Y + K SCC+ +D+ DAR V Sbjct: 6 KIIVAMSGGVDSAVAAGLLMEAGYDVIGVNLRTWEYEAPACDTTKKSCCSPEDIRDARDV 65 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 ++N+ YV E+ F VI F S Y G TP PCV+CN VKF L ++LG D Sbjct: 66 GLSLNIPFYVIKMEKVFGERVIDRFISDYKDGRTPNPCVECNTFVKFGALFEQAKKLGID 125 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + DG R + +D++++Q+Y+L+ +Q + + FPLG+M K Sbjct: 126 KIATGHYAR---VIEVDG--RYAIRNAVDMKKNQTYYLYGLSQDNIKNTVFPLGEMDKSE 180 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258 VR++A+ MGL +A+K +SQ+ICF+ + Y +K+ G+ L +GQI+G+H G Sbjct: 181 VREIAKRMGLPVAEKPESQEICFIPENDYRSFLKK--KGMEFTPGFFKLASGQIIGKHQG 238 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 +TIGQR+GLG+A PL+V+ ++ + + V++G E L EI + L Sbjct: 239 KEGFTIGQRKGLGIAWKNPLYVLSIEDDGT-VVLGEEEETVSESFVLEEITY--QALAPL 295 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 A+ + V+IR PV V + V+F + V GQ+ FY ++ + + Sbjct: 296 ALGQSMEMKVQIRYRSAPVHCKVTSLGETWKVNFLEDVKSVTPGQSATFYPTNGD--YLF 353 Query: 379 GGGII 383 GGII Sbjct: 354 AGGII 358 >gi|82751221|ref|YP_416962.1| 5-methylaminomethyl-2-thiouridylate- methyltransferase tRNA [Staphylococcus aureus RF122] gi|123547857|sp|Q2YT57|MNMA_STAAB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|82656752|emb|CAI81181.1| 5-methylaminomethyl-2-thiouridylate-methyltransferase tRNA [Staphylococcus aureus RF122] Length = 372 Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 207/382 (54%), Gaps = 44/382 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D D Sbjct: 4 KDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIE 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L LGA Sbjct: 61 VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY +R++ +DG M R +D +DQ+YFL +QQQL + FP+GD++K Sbjct: 121 DYVATGHY--ARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E GL A K DS ICF+ + + + + A GD++ L+G+ +G+H+G Sbjct: 177 EVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKHSG 234 Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++ YTIGQR GLG+ G+P FVV ++L+ + +Y+ E + D L+ Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLKDNVLYV-EQGFHHDALYS 280 Query: 318 DAVV---------------DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361 D ++ GF+C K R Q VFV+R ND + V F + + Sbjct: 281 DYLIASDYSFVNPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITP 340 Query: 362 GQACVFYTSDSNEARVLGGGII 383 GQA VFY D LGG II Sbjct: 341 GQAVVFYQGDV----CLGGAII 358 >gi|32474336|ref|NP_867330.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodopirellula baltica SH 1] gi|81657396|sp|Q7TTZ4|MNMA_RHOBA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|32444874|emb|CAD74876.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodopirellula baltica SH 1] Length = 399 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 146/396 (36%), Positives = 206/396 (52%), Gaps = 46/396 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR------------------ 63 RVV+AMSGGVDSSV A LL RDG++VIGV ++ + A+ R Sbjct: 3 RVVLAMSGGVDSSVAAHLLLRDGHEVIGVFMRHGEASAAACRIDSDEPQNTNPLNLPVLG 62 Query: 64 ----------KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET 113 K CC+ D DARRV ++ + Y D +E FR ++ F Y A T Sbjct: 63 DSAGGKRADHKQGCCSATDAADARRVAMSMGIPFYSLDLQEDFRK-IVDYFVDDYLAART 121 Query: 114 PLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQ 173 P PCV CN +KF L + A+ +ATGHY R V +G R + R +D +DQ Sbjct: 122 PNPCVKCNHWIKFGRLFDYADGVDAEFVATGHYAR---MVHSNG--RSELHRGLDGHKDQ 176 Query: 174 SYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK 233 SY LF +L + P+GD K +R++A +GL ++DK DSQ+ICFV QG + D VK Sbjct: 177 SYALFGIDPARLSRMMLPVGDFTKPEIREMATSLGLGVSDKKDSQEICFVTQGHHSDFVK 236 Query: 234 --RINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVI 291 R A G+IV G+++G H G +TIGQR+ LGVAMGEP FV+ ++ ++ RV+ Sbjct: 237 SRRPEMVGATAGEIVTTGGKVVGEHKGFEAFTIGQRKRLGVAMGEPHFVIRIEPDTRRVV 296 Query: 292 VGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP---VFVQRNDDGV 348 +G E L + + NW + + + D ++IR + P P V + + Sbjct: 297 IGRAEELLRPGLVADQCNWF---VTREELADAQSVGIQIRYNGQPHPGHVVMDGSDPTRM 353 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 V F+ + VA GQA V Y + RVLGGG I+ Sbjct: 354 KVMFDDPQAAVAPGQAAVVYDGE----RVLGGGWIT 385 >gi|42523417|ref|NP_968797.1| tRNA-methyltransferase [Bdellovibrio bacteriovorus HD100] gi|39575623|emb|CAE79790.1| tRNA-methyltransferase [Bdellovibrio bacteriovorus HD100] Length = 351 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 144/364 (39%), Positives = 201/364 (55%), Gaps = 20/364 (5%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDARRVCDTIN 84 MSGGVDSS AALL GY+VIG T+Q+ Y++ + G+CC+ DV DAR V D + Sbjct: 1 MSGGVDSSAAAALLVEQGYEVIGATMQVWDYSTCDIEEGNGTCCSSIDVDDARAVADRLG 60 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV + E +FR AVI PF +Y G+TPLPCV+CN +KF L+ R+L D +ATG Sbjct: 61 IPFYVINCEAKFRAAVIDPFLKAYLEGQTPLPCVNCNTYLKFDHLVKKMRELECDYIATG 120 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY + V DD + I D +DQ+YFLF + + L FP+GDMKK VR+ + Sbjct: 121 HYAK---IVYDDKGKASIHTSTDDW-KDQTYFLFTIDPELVPKLLFPVGDMKKPQVREYS 176 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGI--ALEGDIVHL-NGQILGRHNGII 260 GL A K DSQ ICFV Y + +K + + I + +G I GQ++ H GI Sbjct: 177 ESRGLVTARKKDSQGICFVGNQGYQNFIKDHVKSEILASKKGLIKRFPEGQVMASHEGIH 236 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 NYT GQ +GLG+ E LFV+ +D + + V VG E ++ E++ + L D + Sbjct: 237 NYTYGQSKGLGMDYHEKLFVIKIDASDNTVWVG-----EEKHLFANEVDVVDPKLL-DEI 290 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 DG VKIR P V + G + F + + V GQA VFY + +++GG Sbjct: 291 QDGEIMNVKIRYQHKGAPAQVIKTASGFKLKFTEPQRAVTPGQAAVFY----RDRQLVGG 346 Query: 381 GIIS 384 G I+ Sbjct: 347 GWIT 350 >gi|146297250|ref|YP_001181021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|205814264|sp|A4XLP5|MNMA_CALS8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|145410826|gb|ABP67830.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 361 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 131/368 (35%), Positives = 204/368 (55%), Gaps = 15/368 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDARRV 79 +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ + + SCC+ V DAR+V Sbjct: 4 KVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQNECGEELITGKSCCSIYAVDDARKV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + +++ +YVF+ ++ FR VI F Y G TP PC+ CNR +KF L +G D Sbjct: 64 ANILDIPYYVFNMKDDFRKIVIDYFIDEYIKGRTPNPCIMCNRKIKFELFLKKAIAIGMD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + D R ++ R E+DQ+Y L+ TQ+ L FPLG K+ Sbjct: 124 YIATGHY---AIIEYDSSLNRYLLKRSKAKEKDQTYVLYNMTQEMLSKTLFPLGRFSKDE 180 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA + L +A K DSQ+ICF+ Y +++ GI +G V G ILG+ Sbjct: 181 VRKLAEKFKLPVAKKPDSQEICFIPDNNYGKFIEK-ETGIREDGVYVDTEGNILGKSKAY 239 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 NYTIGQR+GLG++ G+ ++VV + ++V++G + + ++N++ E Sbjct: 240 YNYTIGQRKGLGISTGKRMYVVAIKPEENKVVLGEEGKIFADALIATDLNFIPFDKLESE 299 Query: 320 VVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + KIR ++++ V ++ V V F + + + GQ+ VFY +D V+ Sbjct: 300 I----EVTAKIRYTAKEAKAKIVPMENNKVLVKFYEKQRAITPGQSVVFYNNDI----VV 351 Query: 379 GGGIISGS 386 GGGII + Sbjct: 352 GGGIIEKA 359 >gi|295706703|ref|YP_003599778.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus megaterium DSM 319] gi|294804362|gb|ADF41428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus megaterium DSM 319] Length = 370 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 143/375 (38%), Positives = 207/375 (55%), Gaps = 23/375 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K+PKD RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MTKSPKDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 NDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY R DG+ + M R +D +DQ+YFL Q QL + FP+G Sbjct: 118 MTLGADYLATGHYARVAY---RDGEYK--MLRGVDGNKDQTYFLNQLGQDQLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR++A+E GL A K DS ICF+ + + + + + A G + L+G++ Sbjct: 173 EIEKSKVREIAKEAGLATATKKDSTGICFIGERNFKEFLSQYLP--AQPGVMQTLDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVG-PRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP FVV L+KN V G E L + ++ Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGSGEPWFVVGKDLEKNVLYVDQGFHNELLYSTSLTATNVS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368 W+ + + + C K R Q V V++ +DD + V F + + GQA VFY Sbjct: 291 WVSERDWSSPMT----CTAKFRYRQTDSAVTVEKVDDDTIKVIFAEPVRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGII 383 D +GG I Sbjct: 347 KDD----ECVGGATI 357 >gi|42526204|ref|NP_971302.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Treponema denticola ATCC 35405] gi|81570437|sp|Q73PV6|MNMA_TREDE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|41816316|gb|AAS11183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Treponema denticola ATCC 35405] Length = 366 Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 134/356 (37%), Positives = 188/356 (52%), Gaps = 12/356 (3%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+V+V +SGGVDS+V A LL GYDV GVT+QL ++ + D+ DA++V Sbjct: 1 MKVLVGLSGGVDSAVAAKLLIDQGYDVTGVTMQLLPKLSGIYKEQT----DDIEDAKKVA 56 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + H V+D E F+ +I F Y G TP PC CN +KF L + G D Sbjct: 57 DKLGIKHIVYDMRETFKTEIIDYFVEEYKQGRTPNPCFICNSKIKFGLFLEQALKDGFDK 116 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + +G R ++ + D ++DQSYFL TQ+QL FPLGD KE V Sbjct: 117 IATGHYAKIE-KTEIEGDERFLLRQAEDAQKDQSYFLALLTQEQLSRSIFPLGDFTKEKV 175 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A + DSQDICFV Y V+ + AG EG + G +GRH G+ Sbjct: 176 RSIAEDAGLINAHRPDSQDICFVPDDDYTRVINALAAGSFKEGKFIDTMGNEIGRHKGLQ 235 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQRRGL +AMG P++VV D ++ V VG E L + +N + + + Sbjct: 236 YYTIGQRRGLAIAMGYPVYVVKKDAKTNTVTVGKDEELFAESLIASRVNIILKKTIDKEI 295 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDD-----GVYVDFEKSEVGVASGQACVFYTSD 371 + + R + + +N++ V+F + E VA GQA VFYT D Sbjct: 296 --DIEVKTRYRQQKKKAKLIPLKNEEFKPTGKFKVEFIEPEKAVAEGQAAVFYTGD 349 >gi|217967082|ref|YP_002352588.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dictyoglomus turgidum DSM 6724] gi|217336181|gb|ACK41974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dictyoglomus turgidum DSM 6724] Length = 343 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 134/368 (36%), Positives = 205/368 (55%), Gaps = 33/368 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 ++V V MSGGVDSS+ A LLK++GY+VIG+T+ + S + DA++V Sbjct: 3 IKVAVGMSGGVDSSITAYLLKKEGYEVIGLTMNIAYS-------------SSIKDAKKVA 49 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + +N+ H+ D + F +I F SY G TP PCV CN+ +KF LL ++LGAD Sbjct: 50 EYLNIPHFFVDLKNEFEEKIIKYFVESYKHGYTPNPCVFCNKLIKFGLLLEKAKELGADF 109 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 L+TGHY+R V D+ ++ ++ R DL++DQSYFL TQ+Q+ FPLG++ KE V Sbjct: 110 LSTGHYVRK---VWDEERKTYLLMRAKDLKKDQSYFLGMLTQEQIKKTLFPLGELTKEEV 166 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRHN 257 R +A E+G+ +A+K +SQDICF+ Y + + LE G I+ +G+ +G H+ Sbjct: 167 RKIADELGIFVANKKESQDICFLPDKDYKRFLSKY-----LEDKPGKIITEDGKEVGYHS 221 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 G+ ++TIGQRRGL VA+G P++V +D N+ V V RE + +Y +N+ F Sbjct: 222 GVFSFTIGQRRGLRVALGVPVYVRDIDPNTGNVTVTDREKVFGKEVYAVNVNY--PSYFP 279 Query: 318 DAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + + IR + P P V ++ V F+ + + GQ V Y + Sbjct: 280 EK--RELRAYAMIRYNMKPSPGVLKIVSEKEVLFIFDDPQWAITPGQILVCYLDN----H 333 Query: 377 VLGGGIIS 384 VL GII Sbjct: 334 VLCAGIIE 341 >gi|262203144|ref|YP_003274352.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Gordonia bronchialis DSM 43247] gi|262086491|gb|ACY22459.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Gordonia bronchialis DSM 43247] Length = 373 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 155/388 (39%), Positives = 208/388 (53%), Gaps = 30/388 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV+GV L L ++ + R GS CC+ +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVEAGHDVVGVHLAL-STAPGALRTGSRGCCSREDASDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ +RF++ VI F ++YAAG+TP PC+ CN VKF+ L LG Sbjct: 60 AADVLGIPFYVWDFADRFKDDVIDEFVAAYAAGQTPNPCLTCNEKVKFAALAEKAVALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY R DG+ RR +D ++DQSY L T++QL FP+GD K Sbjct: 120 DALATGHYARLA-----DGELRRA----VDADKDQSYVLAVLTRKQLGRAMFPVGDTPKP 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV--HLNGQILGRH 256 +R A GL +A+K DS DICF+ G D + A I L V G L H Sbjct: 171 EIRAEAARRGLSVANKPDSHDICFIPSG---DTRAFLGARIGLRPGAVVDAATGDRLADH 227 Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G+ +TIGQR+GLG+ A G+P +V +D +S V VG LEV I R W Sbjct: 228 EGVHGFTIGQRKGLGIDAPAADGKPRYVTDIDPDSGTVTVGTAADLEVWSISARRAVWT- 286 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVP---VFVQRN-DDGVYVDFEKSEVGVASGQACVFY 368 G D VD C V++R+ P V R+ + G+ ++ + GVA GQA V Y Sbjct: 287 SGHTPDGPVD---CVVQVRAHGGLAPARATPVDRDGEPGIEIELTEPLTGVARGQAAVLY 343 Query: 369 TSDSNEAR-VLGGGIISGSKRSDAVEES 395 D+ VLG G I+ + AV S Sbjct: 344 LPDAQRGDLVLGCGRIAATSARGAVAPS 371 >gi|154686891|ref|YP_001422052.1| tRNA-specific 2-thiouridylase MnmA [Bacillus amyloliquefaciens FZB42] gi|166234844|sp|A7Z745|MNMA_BACA2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|154352742|gb|ABS74821.1| TrmU [Bacillus amyloliquefaciens FZB42] Length = 371 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 145/375 (38%), Positives = 201/375 (53%), Gaps = 22/375 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P+D RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVIRVCNQIGIPYYAVNFEKQYWEKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY R G M R +D +DQ+YFL Q+QL + FP+G Sbjct: 118 LSLGADYLATGHYARVDRSAG-----TVRMLRGLDENKDQTYFLNQLNQEQLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 D++K VR++A+E L A K DS ICF+ + + + + A GD++ ++G++ Sbjct: 173 DLQKSRVREIAKEAELATAAKKDSTGICFIGERNFKTFLSQYLP--AQPGDMMTMDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVH-RIYLREIN 309 GRH+G++ YTIGQR GLG+ GEP F V L+KN V G L +I ++ Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNVS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFY 368 W GL + + C K R Q+ V V+ DD V F+ V GQA VFY Sbjct: 291 WTRPGLMDGGEM---TCTAKFRYRQEDHKVTVKMTGDDEAEVIFDGQVRAVTPGQAVVFY 347 Query: 369 TSDSNEARVLGGGII 383 + LGGG I Sbjct: 348 DGE----ECLGGGTI 358 >gi|163785075|ref|ZP_02179792.1| hypothetical protein HG1285_11328 [Hydrogenivirga sp. 128-5-R1-1] gi|159879656|gb|EDP73443.1| hypothetical protein HG1285_11328 [Hydrogenivirga sp. 128-5-R1-1] Length = 351 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 146/381 (38%), Positives = 206/381 (54%), Gaps = 49/381 (12%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+V V MSGGVDSSV A LLK GYDV G+TL+L +S + S CC+ QDV DA +V Sbjct: 1 MKVAVGMSGGVDSSVAALLLKEKGYDVTGITLKL-SSIENSCDIQVCCSPQDVKDAEKVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGAD 139 + + HY D+E+ F+N VI F + G+TP PC CNR +K L V GAD Sbjct: 60 SFLGIEHYTIDWEKDFKNKVIDYFVNELKEGKTPNPCSVCNREIKTGRLYKYVNLVFGAD 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 LATGHYI++ G ++++ R DL++DQSYF+ ++ L L FPLGD KE Sbjct: 120 FLATGHYIKTVEING-----QKLIKRGKDLKKDQSYFMALVEKEVLNGLLFPLGDFTKEE 174 Query: 200 VRDLAREMGLDIADKSDSQDICF---------VQQGKYFDVVKRINAGIALEGDIVHLNG 250 VR +A + GL ++ K DS +ICF +++ K F++ K GDI+H++G Sbjct: 175 VRKIAEKYGLPVSQKKDSFEICFTAGKTPAEYIEENKIFELQK---------GDIIHISG 225 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN- 309 + LG+H G+ +YTIGQRRGLGV +PL+V+ + ++ VIV L + + N Sbjct: 226 KKLGKHRGLAHYTIGQRRGLGVRWHKPLYVIDKNVENNTVIVAEDNYLLTDTVKAEDFNF 285 Query: 310 ------WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASG 362 W G+ V+ R Q PV V +G+ + ++ +V ASG Sbjct: 286 HLPIEKWEGN------------LNVQGRYRQKPVEVEDFSYKNGILEIKLKQPQVKFASG 333 Query: 363 QACVFYTSDSNEARVLGGGII 383 Q Y D +LGGGII Sbjct: 334 QILAVYKDDI----LLGGGII 350 >gi|168700409|ref|ZP_02732686.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Gemmata obscuriglobus UQM 2246] Length = 357 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 144/369 (39%), Positives = 198/369 (53%), Gaps = 26/369 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKR---KGSCCAGQDVYDA 76 RVV+AMSGGVDSS A LLK+ G++VIG+ ++ + + +R K CC+ D DA Sbjct: 3 RVVLAMSGGVDSSASAVLLKKQGHEVIGLFMRTGTHGHDQPDERRDNKKGCCSAIDAGDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV D +++ Y D+E F N +I FA Y G TP PCV CN +KF L + ++L Sbjct: 63 RRVADKLDIPFYALDFESEF-NRIIDYFADEYVRGRTPNPCVVCNNWLKFGQLWTFGQKL 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + R +G+ + + +D ++DQSY L ++ L L FP+G Sbjct: 122 GADFIATGHYAQVR-----NGE----LHKGVDADKDQSYVLHGIKREVLPHLLFPVGGYT 172 Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K +R ARE L +A+K DS +ICFV G + DVV+ G A G I +G +LG Sbjct: 173 KPQIRQFAREASLVGVAEKPDSVEICFVPSGNHTDVVRARRPGAATAGVIAERDGTVLGD 232 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H+GI YTIGQR+GL + G+ FV+ L ++ V+VG L + +NWL Sbjct: 233 HDGIDRYTIGQRKGLNIGGGKKRFVLELLAETNTVVVGDESDLLSSGLVASGMNWL---- 288 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 D + C KIR VP V D G V F+ + V GQA Y + Sbjct: 289 -IDPPTEPLTCVAKIRYRHAGVPATVTALPDGGAEVVFDAPQPAVTPGQALALY----DG 343 Query: 375 ARVLGGGII 383 RVLGGG I Sbjct: 344 TRVLGGGWI 352 >gi|284035746|ref|YP_003385676.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Spirosoma linguale DSM 74] gi|283815039|gb|ADB36877.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Spirosoma linguale DSM 74] Length = 391 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 139/394 (35%), Positives = 217/394 (55%), Gaps = 33/394 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDA 76 K R++VAMSGG+DSS+ A +L +GY+VIG+T++ Y S +K++ CC+ + DA Sbjct: 3 KHGRILVAMSGGIDSSLAAVMLHEEGYEVIGMTMKTWDYASSGGTKKETGCCSLDSINDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + ++ HY+ D E F +AVI F Y G TP PCV CN +K+ LL +L Sbjct: 63 RNIAVSLGFPHYILDIREEFGDAVIDHFTGEYLEGRTPNPCVMCNTHIKWDALLRRADRL 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 + +ATGHY R D+G R ++ + +D +DQSY L+ +Q+ L + PLG ++ Sbjct: 123 DCESIATGHYAHIRE---DNG--RFVLSKGVDTLKDQSYVLWGVSQESLSRTKLPLGHLR 177 Query: 197 KESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIV-HLNGQ 251 K +RD+A E G +++ KS+S +ICFV Y +KR G+ E G+ V G+ Sbjct: 178 KSEIRDMATERGFMELVTKSESYEICFVPDNDYRGFLKRRMPGLEAEVAGGNFVMEGTGK 237 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 +LG+H G YTIGQR+GLG+A G+P+FV + K+++ V++G + L + + ++N Sbjct: 238 VLGKHQGYPFYTIGQRKGLGMAFGQPMFVTEIRKDTNEVVLGVDKDLYRDGMIVSKLN-- 295 Query: 312 GDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 L + ++G + K+R + ++ D + V F++ +A GQA VFY Sbjct: 296 ---LQKYPTLNGPMETVTKVRYKDPGTAATISQSGDKIEVLFKEGVSAIAPGQAAVFYEG 352 Query: 371 DSNEARVLGGGIISGSKRSDAVEESLLSVIGDEF 404 D V+GGG I S R GDEF Sbjct: 353 DD----VIGGGWIMKSFRQ-----------GDEF 371 >gi|300771093|ref|ZP_07080969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sphingobacterium spiritivorum ATCC 33861] gi|300761763|gb|EFK58583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sphingobacterium spiritivorum ATCC 33861] Length = 363 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 129/368 (35%), Positives = 207/368 (56%), Gaps = 18/368 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDARRV 79 RV+VAMSGGVDSSV A +L GY+VIG+T++ Y S S ++ CC+ + DAR + Sbjct: 6 RVLVAMSGGVDSSVAAVMLHEQGYEVIGITMKTWDYASSGGSSKETGCCSLDSINDARAL 65 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 H++ D + F + VI F Y AG TP PCV CN +K+ L+ +L + Sbjct: 66 AVNYGFPHFILDIRDEFGDYVIDNFVDEYIAGRTPNPCVLCNTHIKWEALIKRANKLDCE 125 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY RL+ ++G R ++ + D +DQSY L+ TQ+ L +FPLG K+ Sbjct: 126 FIATGHYANIRLH--ENG--RHVISKGRDENKDQSYVLWGVTQENLARTQFPLGSFTKKE 181 Query: 200 VRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGR 255 +R +A +MG +++A+KS+S +ICFV Y ++ + + G+ + +G ++G+ Sbjct: 182 IRQMAADMGQMELANKSESYEICFVPDNDYRAFLRHKMPDLDEKVGPGNFILSDGTVVGQ 241 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H G +TIGQR+GLG+A+G+P+FV+ + S+ V++G LE + Y+R IN + Sbjct: 242 HIGYPYFTIGQRKGLGIALGKPMFVIEILPESNSVMLGEEHELERAQAYVRNINLVKYA- 300 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 ++ + + KIR + + D + VDFE G+A GQ+ VFY + Sbjct: 301 ---SISEPMEAVTKIRYKDSGALSTITQQGDIMKVDFEHHVKGIAPGQSAVFYEGND--- 354 Query: 376 RVLGGGII 383 ++GGG + Sbjct: 355 -LIGGGFL 361 >gi|258424047|ref|ZP_05686929.1| tRNA methyl transferase [Staphylococcus aureus A9635] gi|257845668|gb|EEV69700.1| tRNA methyl transferase [Staphylococcus aureus A9635] Length = 372 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 206/371 (55%), Gaps = 22/371 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D D Sbjct: 4 KDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIE 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L LGA Sbjct: 61 VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY +R++ +DG M R +D +DQ+YFL +QQQL + FP+GD++K Sbjct: 121 DYVATGHY--ARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E GL A K DS ICF+ + + + + A GD++ L+G+ +G+H+G Sbjct: 177 EVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKHSG 234 Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF- 316 ++ YTIGQR GLG+ G+P FVV KN ++ + + +Y + D F Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV--GKNLKDNVLYVEQGFHHNALYSDYL-IASDYSFV 291 Query: 317 --EDAVVD-GFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDS 372 ED +D GF+C K R Q VFV+R ND + V F++ + GQA VFY D Sbjct: 292 NPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFDEPVRAITPGQAVVFYQGDV 351 Query: 373 NEARVLGGGII 383 LGG I Sbjct: 352 ----CLGGATI 358 >gi|118473593|ref|YP_886701.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium smegmatis str. MC2 155] gi|166235065|sp|A0QUW3|MNMA_MYCS2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|118174880|gb|ABK75776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium smegmatis str. MC2 155] Length = 356 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 148/373 (39%), Positives = 201/373 (53%), Gaps = 28/373 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+VAMSGGVDSSV AA + G+DV+GV L L +S + R GS CC+ +D DARR Sbjct: 1 MRVLVAMSGGVDSSVAAARMVDAGHDVVGVHLAL-SSAPGTLRTGSRGCCSKEDASDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ +RF++ VI F SYA GETP PCV CN +KFS L + LG Sbjct: 60 VADILGIPFYVWDFADRFKDDVIDDFVESYARGETPNPCVRCNERIKFSALAARALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R DG+ RR +D ++DQSY L T +QL FP+GD K Sbjct: 120 DAVATGHYARL-----SDGRLRRA----VDADKDQSYVLGVLTAEQLRHALFPIGDTPKP 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257 +R A E GL +A+K DS DICF+ G D + A I + G +V +G +L H+ Sbjct: 171 QIRAEAAERGLAVAEKPDSHDICFIPTG---DTKAFLGARIGVRPGAVVDGSGTVLAEHD 227 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+ +TIGQR+GLG+A G P +V +D + V VGP E LEV + Sbjct: 228 GVHGFTIGQRKGLGIAGPGADGRPRYVTAIDAETGTVRVGPAEDLEVWELTGERP----- 282 Query: 314 GLFEDAVVDG--FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 +F V G +C V++R+ + D + + GVA GQ V Y D Sbjct: 283 -VFTSGVEPGGPIECQVQVRAHGGITDTVAELRDGKLELSLRAPLRGVAPGQTMVLYRPD 341 Query: 372 SNEARVLGGGIIS 384 + V+ I+ Sbjct: 342 PDGDEVIASATIT 354 >gi|288555376|ref|YP_003427311.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus pseudofirmus OF4] gi|288546536|gb|ADC50419.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase [Bacillus pseudofirmus OF4] Length = 367 Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 205/377 (54%), Gaps = 27/377 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K P+D +VVV MSGGVDSSV A +LK GYDVIG+ ++ ++ S G C A +D Sbjct: 1 MKKRPEDTKVVVGMSGGVDSSVTALVLKEQGYDVIGIFMKNWDDTDES---GFCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L+ Sbjct: 58 EDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLNHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + + R +D +DQ+YFL A +QQQL FP+G Sbjct: 118 MALGADYVATGHYARVEEV---DGEFQ--LLRGVDSNKDQTYFLNALSQQQLSKTMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI--ALEGDIVHLNGQ 251 + K+ VR+ A L A K DS ICF+ + + K +G A G++ ++G+ Sbjct: 173 HIPKKEVREKALAADLATAKKKDSTGICFIGERNF----KEFLSGFLPAQPGEMQTVDGE 228 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 + G+H+G++ YT+GQR+GLG+ GEP FV+ D + +IVG + L + Sbjct: 229 VKGQHDGLMYYTLGQRQGLGIGGAGEPWFVIDKDLERNVLIVGQGFHNQGLYSEGLEAVH 288 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACV 366 +NW+ F+C K R QD V V + D G V F++ E + GQA V Sbjct: 289 LNWIS----PTKPTSEFRCTAKFRYRQDDQGVTVIPQEDGGALVKFDEPERAITPGQAVV 344 Query: 367 FYTSDSNEARVLGGGII 383 FY D LGGG I Sbjct: 345 FYEGDV----CLGGGTI 357 >gi|311069234|ref|YP_003974157.1| tRNA-specific 2-thiouridylase MnmA [Bacillus atrophaeus 1942] gi|310869751|gb|ADP33226.1| tRNA-specific 2-thiouridylase MnmA [Bacillus atrophaeus 1942] Length = 371 Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 143/375 (38%), Positives = 207/375 (55%), Gaps = 22/375 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P+D RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVIRVCNQIGIPYYAVNFEKQYWDKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY R V G + R M R +D +DQ+YFL T++QL + FP+G Sbjct: 118 LSLGADYLATGHYAR----VDRSGGKVR-MLRGLDENKDQTYFLNQLTEEQLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR++A+E L A K DS ICF+ + + + + A GD++ ++G++ Sbjct: 173 ELQKSRVREIAKEAELATAAKKDSTGICFIGERNFKTFLSQYLP--AQPGDMMTMDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVH-RIYLREIN 309 GRH+G++ YTIGQR GLG+ GEP F V L+KN V G L +I +++ Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITAADVS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W G+ + + C K R Q+ V V+ + V F++ V GQA VFY Sbjct: 291 WTRTGILDGKEI---SCTAKFRYRQEDHKVTVRMTGESEAEVIFDEQVRAVTPGQAVVFY 347 Query: 369 TSDSNEARVLGGGII 383 + LGGG I Sbjct: 348 DGEE----CLGGGTI 358 >gi|311029205|ref|ZP_07707295.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase [Bacillus sp. m3-13] Length = 368 Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 143/377 (37%), Positives = 204/377 (54%), Gaps = 26/377 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K P+D RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ S G C A +D Sbjct: 1 MKKRPEDTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDDTDES---GFCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D +V + I + +Y ++E+++ + V F Y +G TP P V CN+ +KF L+ Sbjct: 58 EDVIKVSNQIGIPYYAVNFEKQYWDKVFTYFLEEYKSGRTPNPDVMCNKEIKFKAFLNHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +GAD +ATGHY R DG+ R + R D +DQSYFL A +Q+QL FPLG Sbjct: 118 MSIGADYIATGHYARVEE---KDGQYR--LLRGADHNKDQSYFLNALSQKQLSKTMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI--ALEGDIVHLNGQ 251 + K+ VR++A E GL A K DS ICF+ + + K +G A G++ ++G+ Sbjct: 173 HLSKKEVREIAIEAGLATAKKKDSTGICFIGERNF----KEFLSGFLPAQPGEMQTVDGE 228 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 + G H+G++ YTIGQR+GLG+ GEP FV+ D + +IVG E L + Sbjct: 229 MKGHHDGLMYYTIGQRQGLGIGGSGEPWFVIGKDLKRNVLIVGQGFHNEGLYSEGLEAIG 288 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACV 366 +NW+ L F C K+R Q+ V V +DG + F K + + GQA V Sbjct: 289 MNWIKRDL---TFKQEFSCTAKMRYRQEDQEVTVYPQEDGTAKIYFHKRQRAITPGQAVV 345 Query: 367 FYTSDSNEARVLGGGII 383 Y D +GGG I Sbjct: 346 LYDGDI----CIGGGTI 358 >gi|239637572|ref|ZP_04678544.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus warneri L37603] gi|239596790|gb|EEQ79315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus warneri L37603] Length = 372 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 208/371 (56%), Gaps = 22/371 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 +D RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 4 QDTRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIA 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L +LGA Sbjct: 61 VCNQIGIPYYAVNFEQEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R + +DG M R +D +DQ+YFL +QQQL + FP+GD+ K+ Sbjct: 121 DYVATGHYARIRRH--EDGHVE--MLRGIDNNKDQTYFLNQLSQQQLSKVMFPIGDIDKK 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A E L A K DS ICF+ + + + + A GD++ L+G+ +G H+G Sbjct: 177 RVREIAEEQDLATAKKKDSTGICFIGERNFKTFLSQYLP--AQSGDMITLDGKKMGVHSG 234 Query: 259 IINYTIGQRRGLGVAM-GEPLFVV--YLDKNSSRVIVG-PRESLEVHRIYLREINWLGDG 314 ++ YTIGQR GLG+ G+P FVV L+ N V G ++L + +++++ + Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVVGKNLEDNVLYVEQGFHHDALYSDYLIASDVSFVNE- 293 Query: 315 LFEDAVVD-GFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDS 372 +D +D GF C K R Q VFVQR D + + V F++ + GQA VFY Sbjct: 294 --QDVDLDKGFYCTAKFRYRQKDTKVFVQREDNEAIRVTFDEPVRAITPGQAVVFY---- 347 Query: 373 NEARVLGGGII 383 NE LGG I Sbjct: 348 NEEVCLGGATI 358 >gi|239827834|ref|YP_002950458.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus sp. WCH70] gi|239808127|gb|ACS25192.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus sp. WCH70] Length = 371 Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 144/377 (38%), Positives = 203/377 (53%), Gaps = 27/377 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K PKD RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MNKAPKDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +GAD +ATGHY R DG+ + M R +D +DQ+YFL Q L + FP+G Sbjct: 118 LSIGADYVATGHYARVEY---RDGEYK--MLRGVDQNKDQTYFLNQLGQSVLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR +A++ GL A K DS ICF+ + + + + N A G + L+G++ Sbjct: 173 HLEKAQVRQIAKDAGLVTATKKDSTGICFIGERDFKEFLS--NYLPAKPGIMQTLDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LRE 307 G+H+G++ YTIGQR GLG+ GEP FVV KN I+ + +Y Sbjct: 231 GKHDGVMYYTIGQRHGLGIGGSGEPWFVV--GKNVKENILYVAQGFNNEYLYSTSLIATN 288 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366 +NW+ D + F+C K R Q V V +DD V V F++ V GQA V Sbjct: 289 VNWVSD----RKPTNSFQCTAKFRYRQPDTGVTVHIIDDDKVEVVFDEPVRAVTPGQAVV 344 Query: 367 FYTSDSNEARVLGGGII 383 FY N LGGG I Sbjct: 345 FY----NGEECLGGGTI 357 >gi|256822321|ref|YP_003146284.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Kangiella koreensis DSM 16069] gi|256795860|gb|ACV26516.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Kangiella koreensis DSM 16069] Length = 367 Score = 229 bits (585), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 138/384 (35%), Positives = 210/384 (54%), Gaps = 29/384 (7%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 DK P++ V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ Sbjct: 3 DKAPENTHVIVGMSGGVDSSVSAYLLKKQGYQVEGLFMKNWEEDDTDE---YCSAAEDLA 59 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ VCD + + ++ + + V F Y AG TP P + CN+ +KF L + Sbjct: 60 DAQAVCDKLGIKLRTVNFAAEYWDRVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLDYAQ 119 Query: 135 QLGADVLATGHYIRSRLYVGD-DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY+R G+ DGK + R +DL +DQSYFL+ + +++ FP+G Sbjct: 120 LLGADYIATGHYVRR----GEADGK--ATLLRGLDLNKDQSYFLYGVSHEKIAKTLFPVG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR +A E GL A K DS ICF+ + K+ D +++ A G+I G+++ Sbjct: 174 CIEKPEVRKIAEEQGLVTAKKKDSTGICFIGERKFTDFLQQYLP--AQPGNIETPEGEVI 231 Query: 254 GRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYL 305 G+HNG++ +T+GQR+GLG+ + EP F + D + +IVG L H + Sbjct: 232 GKHNGLMYHTLGQRKGLGIGGRQDSSEEPWFTLNKDLKRNVLIVGQGHEHPLLMSHGLIA 291 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQA 364 +++W+ + D F+C K R QD VP V+R ND V+F+ + V GQ+ Sbjct: 292 DKLDWIAT----EPPSDEFRCTAKTRYRQDDVPCQVKRLNDTQWLVEFDDKQRAVTPGQS 347 Query: 365 CVFYTSDSNEARVLGGGIISGSKR 388 VFY + LGGGII +R Sbjct: 348 VVFYQGEV----CLGGGIIKEIRR 367 >gi|83816248|ref|YP_446592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salinibacter ruber DSM 13855] gi|123528021|sp|Q2RZN9|MNMA_SALRD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|83757642|gb|ABC45755.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salinibacter ruber DSM 13855] Length = 383 Score = 229 bits (585), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 142/374 (37%), Positives = 203/374 (54%), Gaps = 21/374 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS---CCAGQDVYD 75 K RV+VAMSGGVDSSV A LLK GYDV+G+T++ ++ + R G CC+ + + D Sbjct: 3 KKGRVLVAMSGGVDSSVTAVLLKERGYDVVGLTMKTWDYSTSGGRDGKEVGCCSIESMND 62 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 AR V H+V D E F + VI F Y +G TP PCV CN +K+ LL Sbjct: 63 ARVVATEHGFPHFVVDLREEFGDWVIERFTDEYLSGRTPNPCVLCNTHIKWDALLQRADD 122 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L + +ATGHY R DD + R ++ R +D +DQSY L+ Q+ L FPLG Sbjct: 123 LDCEYIATGHYANVRY---DDERDRYLLSRGLDRNKDQSYALWGLPQEHLARSIFPLGAY 179 Query: 196 KKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQ 251 +K +R++A E GLD +ADK DS +ICF+ Y +K G+ E G V +G Sbjct: 180 EKPEIREMAAEFGLDNVADKPDSYEICFIPDNDYPRFLKDRVDGLEEEVSGGTFVLSDGT 239 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 ++G H+G YTIGQRRGL +A+GE ++V +D ++ + VGP+E L + EIN Sbjct: 240 VVGEHDGYPFYTIGQRRGLDLALGERVYVTDIDPETNTITVGPKEELMEQTLTAHEIN-- 297 Query: 312 GDGLFEDAVVDGFK-CFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYT 369 L + +DG + + IR + D Q ++D + V F + + + GQ+ V Y Sbjct: 298 ---LVKYPELDGERPAWGTIRYNDDGAGCLAWQPDEDTLKVAFAEPKRAITPGQSLVLYE 354 Query: 370 SDSNEARVLGGGII 383 + VLGGG I Sbjct: 355 DED----VLGGGWI 364 >gi|221141109|ref|ZP_03565602.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus str. JKD6009] Length = 364 Score = 229 bits (584), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 206/382 (53%), Gaps = 44/382 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D D Sbjct: 4 KDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIE 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L LGA Sbjct: 61 VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY +R++ +DG M R +D +DQ+YFL +QQQL + FP+GD++K Sbjct: 121 DYVATGHY--ARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E GL A K DS ICF+ + + + + A GD++ L+G+ +G+H+G Sbjct: 177 EVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKHSG 234 Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++ YTIGQR GLG+ G+P FVV ++L+ + +Y+ E + D L+ Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLKDNVLYV-EQGFHHDALYS 280 Query: 318 DAVV---------------DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361 D ++ GF+C K R Q VFV+R ND + V F + + Sbjct: 281 DYLIASDYSFVNPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITP 340 Query: 362 GQACVFYTSDSNEARVLGGGII 383 GQA VFY D LGG I Sbjct: 341 GQAVVFYQGDV----CLGGATI 358 >gi|169630437|ref|YP_001704086.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium abscessus ATCC 19977] gi|229486416|sp|B1MDW3|MNMA_MYCA9 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|169242404|emb|CAM63432.1| Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium abscessus] Length = 356 Score = 229 bits (584), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 139/371 (37%), Positives = 203/371 (54%), Gaps = 24/371 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+++ AMSGGVDSSV AA + G++V+GV L L ++ + R GS CC+ +D DARR Sbjct: 1 MKILAAMSGGVDSSVAAARMVDAGHEVVGVHLAL-SAAPGTLRTGSRGCCSKEDAADARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ +RF+ VI F +YA G TP PCV CN +KF+ L LG Sbjct: 60 VADMLGIPFYVWDFADRFKEDVIDDFVEAYAEGRTPNPCVKCNEKIKFAALADRAVALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R + DG+ RR +D ++DQSY L T +QL FP+GD K Sbjct: 120 DAVATGHYARLQ-----DGRLRRA----VDADKDQSYVLGVLTPEQLRRAMFPVGDSPKP 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257 +R A + GL +A+K DS DICF+ G D + A I + G++V +G +L H Sbjct: 171 DIRAEAEQRGLLVANKPDSHDICFIPSG---DTQAFLGARIGVRRGNVVDADGSVLATHA 227 Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+ +TIGQR+GLG+ A G P +V +D ++ V VG E LE+ + W Sbjct: 228 GVHEFTIGQRKGLGLVGPAADGRPRYVTSIDAETATVRVGTVEDLEIWEFGGEPVVWTSG 287 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + + +C V++R+ V V+ + ++V + GVA GQ V Y D+ Sbjct: 288 RVPGQPI----ECQVQVRAHGSVVDAIVEPGAERIHVRLRTALRGVAPGQTVVLYRPDAE 343 Query: 374 EARVLGGGIIS 384 VLG +I+ Sbjct: 344 GDEVLGSAVIT 354 >gi|227540270|ref|ZP_03970319.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sphingobacterium spiritivorum ATCC 33300] gi|227239914|gb|EEI89929.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sphingobacterium spiritivorum ATCC 33300] Length = 363 Score = 229 bits (584), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 129/368 (35%), Positives = 207/368 (56%), Gaps = 18/368 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDARRV 79 RV+VAMSGGVDSSV A +L GY+VIG+T++ Y S S ++ CC+ + DAR + Sbjct: 6 RVLVAMSGGVDSSVAAVMLHEQGYEVIGITMKTWDYASSGGSSKETGCCSLDSINDARAL 65 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 H++ D + F + VI F Y AG TP PCV CN +K+ L+ +L + Sbjct: 66 AVNYGFPHFILDIRDEFGDYVIDNFVDEYIAGRTPNPCVLCNTHIKWEALIKRANKLDCE 125 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY RL+ ++G R ++ + D +DQSY L+ TQ+ L +FPLG K+ Sbjct: 126 FIATGHYANIRLH--ENG--RHVISKGRDENKDQSYVLWGVTQENLARTQFPLGSFTKKE 181 Query: 200 VRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGR 255 +R +A +MG +++A+KS+S +ICFV Y ++ + + G+ + +G ++G+ Sbjct: 182 IRQMAADMGQMELANKSESYEICFVPDNDYRAFLRHKMPDLDEKVGPGNFILSDGTVVGQ 241 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H G +TIGQR+GLG+A+G+P+FV+ + S+ V++G LE + Y+R IN + Sbjct: 242 HIGYPYFTIGQRKGLGIALGKPMFVIEILPESNSVMLGEEHELERAQAYVRNINLVKYA- 300 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 ++ + + KIR + + D + VDFE G+A GQ+ VFY + Sbjct: 301 ---SLSEPMEAVTKIRYKDSGALSTITQQGDIMKVDFEHYVKGIAPGQSAVFYEGND--- 354 Query: 376 RVLGGGII 383 ++GGG + Sbjct: 355 -LIGGGFL 361 >gi|308174451|ref|YP_003921156.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Bacillus amyloliquefaciens DSM 7] gi|307607315|emb|CBI43686.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Bacillus amyloliquefaciens DSM 7] gi|328912774|gb|AEB64370.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Bacillus amyloliquefaciens LL3] Length = 371 Score = 229 bits (584), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 146/375 (38%), Positives = 202/375 (53%), Gaps = 22/375 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P+D RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVIRVCNQIGIPYYAVNFEKQYWEKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY R V G R M R +D +DQ+YFL Q+QL + FP+G Sbjct: 118 LSLGADYLATGHYAR----VDRSGDTVR-MLRGLDENKDQTYFLNQLNQEQLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 D++K VR++A+E L A K DS ICF+ + + + + A GD++ ++G++ Sbjct: 173 DLQKSRVREIAKEAELATAAKKDSTGICFIGERNFKTFLSQYLP--AQPGDMMTMDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVH-RIYLREIN 309 GRH+G++ YTIGQR GLG+ GEP F V L+KN V G L +I I+ Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368 W GL + + C K R Q+ V V+ D + F+ V GQA VFY Sbjct: 291 WTRPGLMDGGEM---TCTAKFRYRQEDHKVTVKMTGADEAEIIFDGQVRAVTPGQAVVFY 347 Query: 369 TSDSNEARVLGGGII 383 + LGGG I Sbjct: 348 DGE----ECLGGGTI 358 >gi|15924611|ref|NP_372145.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus Mu50] gi|156979939|ref|YP_001442198.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus Mu3] gi|255006407|ref|ZP_05145008.2| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus Mu50-omega] gi|24638325|sp|Q931Q6|MNMA_STAAM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|166235085|sp|A7X333|MNMA_STAA1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|14247392|dbj|BAB57783.1| tRNA-methyltransferase [Staphylococcus aureus subsp. aureus Mu50] gi|156722074|dbj|BAF78491.1| 5-methylaminomethyl-2-thiouridylate- methyltransf erase [Staphylococcus aureus subsp. aureus Mu3] Length = 372 Score = 229 bits (583), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 206/382 (53%), Gaps = 44/382 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D D Sbjct: 4 KDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIE 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L LGA Sbjct: 61 VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY +R++ +DG M R +D +DQ+YFL +QQQL + FP+GD++K Sbjct: 121 DYVATGHY--ARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E GL A K DS ICF+ + + + + A GD++ L+G+ +G+H+G Sbjct: 177 EVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKHSG 234 Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++ YTIGQR GLG+ G+P FVV ++L+ + +Y+ E + D L+ Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLKDNVLYV-EQGFHHDALYS 280 Query: 318 DAVV---------------DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361 D ++ GF+C K R Q VFV+R ND + V F + + Sbjct: 281 DYLIASDYSFVNPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITP 340 Query: 362 GQACVFYTSDSNEARVLGGGII 383 GQA VFY D LGG I Sbjct: 341 GQAVVFYQGDV----CLGGATI 358 >gi|323442826|gb|EGB00451.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus O46] Length = 372 Score = 229 bits (583), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 206/382 (53%), Gaps = 44/382 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D D Sbjct: 4 KDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIE 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L LGA Sbjct: 61 VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY +R++ +DG M R +D +DQ+YFL +QQQL + FP+GD++K Sbjct: 121 DYVATGHY--ARIHRHEDGNVE--MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E GL A K DS ICF+ + + + + A GD++ L+G+ +G+H+G Sbjct: 177 EVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKHSG 234 Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++ YTIGQR GLG+ G+P FVV ++L+ + +Y+ E + D L+ Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLKDNVLYV-EQGFHHDALYS 280 Query: 318 DAVV---------------DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361 D ++ GF+C K R Q VFV+R ND + V F + + Sbjct: 281 DYLIASDYSFVNPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITP 340 Query: 362 GQACVFYTSDSNEARVLGGGII 383 GQA VFY D LGG I Sbjct: 341 GQAVVFYQGDV----CLGGATI 358 >gi|15927201|ref|NP_374734.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus N315] gi|49483866|ref|YP_041090.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus MRSA252] gi|57650503|ref|YP_186516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus COL] gi|148268102|ref|YP_001247045.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus JH9] gi|150394170|ref|YP_001316845.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus JH1] gi|151221735|ref|YP_001332557.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus str. Newman] gi|161509848|ref|YP_001575507.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253316605|ref|ZP_04839818.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732278|ref|ZP_04866443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733127|ref|ZP_04867292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|257425746|ref|ZP_05602170.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus 55/2053] gi|257428406|ref|ZP_05604804.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus 65-1322] gi|257431044|ref|ZP_05607423.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp. aureus 68-397] gi|257433730|ref|ZP_05610088.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp. aureus E1410] gi|257436645|ref|ZP_05612689.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus M876] gi|257793696|ref|ZP_05642675.1| tRNA methyl transferase [Staphylococcus aureus A9781] gi|258411005|ref|ZP_05681285.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus A9763] gi|258420193|ref|ZP_05683148.1| tRNA methyl transferase [Staphylococcus aureus A9719] gi|258438195|ref|ZP_05689479.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A9299] gi|258443658|ref|ZP_05691997.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A8115] gi|258446865|ref|ZP_05695019.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A6300] gi|258448779|ref|ZP_05696891.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus A6224] gi|258450551|ref|ZP_05698613.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A5948] gi|258453598|ref|ZP_05701576.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A5937] gi|262048616|ref|ZP_06021499.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase [Staphylococcus aureus D30] gi|269203247|ref|YP_003282516.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus ED98] gi|282893124|ref|ZP_06301358.1| tRNA methyl transferase [Staphylococcus aureus A8117] gi|282904202|ref|ZP_06312090.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus C160] gi|282906028|ref|ZP_06313883.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus Btn1260] gi|282908941|ref|ZP_06316759.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911258|ref|ZP_06319060.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus WBG10049] gi|282914426|ref|ZP_06322212.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus M899] gi|282916890|ref|ZP_06324648.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus D139] gi|282919396|ref|ZP_06327131.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus C427] gi|282920169|ref|ZP_06327894.1| tRNA methyl transferase [Staphylococcus aureus A9765] gi|282924721|ref|ZP_06332389.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus C101] gi|282928255|ref|ZP_06335860.1| tRNA methyl transferase [Staphylococcus aureus A10102] gi|283958382|ref|ZP_06375833.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus A017934/97] gi|284024678|ref|ZP_06379076.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus 132] gi|293503501|ref|ZP_06667348.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus 58-424] gi|293510518|ref|ZP_06669224.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus M809] gi|293531058|ref|ZP_06671740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus M1015] gi|294848651|ref|ZP_06789397.1| tRNA methyl transferase [Staphylococcus aureus A9754] gi|295406743|ref|ZP_06816548.1| tRNA methyl transferase [Staphylococcus aureus A8819] gi|295428198|ref|ZP_06820830.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275907|ref|ZP_06858414.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus MR1] gi|297245675|ref|ZP_06929540.1| tRNA methyl transferase [Staphylococcus aureus A8796] gi|297590835|ref|ZP_06949473.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|304380782|ref|ZP_07363449.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|24638330|sp|Q99TM8|MNMA_STAAN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|56749735|sp|Q6GG82|MNMA_STAAR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71153356|sp|Q5HFE1|MNMA_STAAC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|172048920|sp|A6QHG3|MNMA_STAAE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|189040510|sp|A6U290|MNMA_STAA2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|189040511|sp|A5ITE6|MNMA_STAA9 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|189040512|sp|A8Z4F9|MNMA_STAAT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205829108|sp|Q2FGA5|MNMA_STAA3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205829109|sp|Q2FXV6|MNMA_STAA8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|13701419|dbj|BAB42713.1| (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Staphylococcus aureus subsp. aureus N315] gi|49241995|emb|CAG40692.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|57284689|gb|AAW36783.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus COL] gi|147741171|gb|ABQ49469.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus JH9] gi|149946622|gb|ABR52558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus JH1] gi|150374535|dbj|BAF67795.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Staphylococcus aureus subsp. aureus str. Newman] gi|160368657|gb|ABX29628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724067|gb|EES92796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728883|gb|EES97612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|257271440|gb|EEV03586.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus 55/2053] gi|257275247|gb|EEV06734.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus 65-1322] gi|257278247|gb|EEV08889.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp. aureus 68-397] gi|257281823|gb|EEV11960.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp. aureus E1410] gi|257283996|gb|EEV14119.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus M876] gi|257787668|gb|EEV26008.1| tRNA methyl transferase [Staphylococcus aureus A9781] gi|257840155|gb|EEV64619.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus A9763] gi|257843904|gb|EEV68298.1| tRNA methyl transferase [Staphylococcus aureus A9719] gi|257848239|gb|EEV72230.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A9299] gi|257851064|gb|EEV75007.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A8115] gi|257854440|gb|EEV77389.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A6300] gi|257858057|gb|EEV80946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus A6224] gi|257861709|gb|EEV84508.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A5948] gi|257864329|gb|EEV87079.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A5937] gi|259163263|gb|EEW47822.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase [Staphylococcus aureus D30] gi|262075537|gb|ACY11510.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus ED98] gi|269941107|emb|CBI49493.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|282313556|gb|EFB43951.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus C101] gi|282317206|gb|EFB47580.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus C427] gi|282319377|gb|EFB49729.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus D139] gi|282321607|gb|EFB51932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus M899] gi|282324953|gb|EFB55263.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327205|gb|EFB57500.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331320|gb|EFB60834.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus Btn1260] gi|282590062|gb|EFB95144.1| tRNA methyl transferase [Staphylococcus aureus A10102] gi|282594517|gb|EFB99502.1| tRNA methyl transferase [Staphylococcus aureus A9765] gi|282595820|gb|EFC00784.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus C160] gi|282764442|gb|EFC04568.1| tRNA methyl transferase [Staphylococcus aureus A8117] gi|283470898|emb|CAQ50109.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus ST398] gi|283790531|gb|EFC29348.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus A017934/97] gi|285817303|gb|ADC37790.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus 04-02981] gi|290920326|gb|EFD97392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus M1015] gi|291095167|gb|EFE25432.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus 58-424] gi|291466882|gb|EFF09402.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus M809] gi|294824677|gb|EFG41100.1| tRNA methyl transferase [Staphylococcus aureus A9754] gi|294968490|gb|EFG44514.1| tRNA methyl transferase [Staphylococcus aureus A8819] gi|295128556|gb|EFG58190.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297177326|gb|EFH36578.1| tRNA methyl transferase [Staphylococcus aureus A8796] gi|297575721|gb|EFH94437.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|302333295|gb|ADL23488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus JKD6159] gi|302751450|gb|ADL65627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340658|gb|EFM06591.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312437911|gb|ADQ76982.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus TCH60] gi|312830008|emb|CBX34850.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129903|gb|EFT85893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus CGS03] gi|315195521|gb|EFU25908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus CGS00] gi|315198681|gb|EFU29009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus CGS01] gi|320140492|gb|EFW32346.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus MRSA131] gi|320144031|gb|EFW35800.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus MRSA177] gi|323439031|gb|EGA96763.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus O11] gi|329314296|gb|AEB88709.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp. aureus T0131] gi|329727166|gb|EGG63622.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus 21172] gi|329728421|gb|EGG64858.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus 21189] Length = 372 Score = 229 bits (583), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 206/382 (53%), Gaps = 44/382 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D D Sbjct: 4 KDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIE 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L LGA Sbjct: 61 VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY +R++ +DG M R +D +DQ+YFL +QQQL + FP+GD++K Sbjct: 121 DYVATGHY--ARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E GL A K DS ICF+ + + + + A GD++ L+G+ +G+H+G Sbjct: 177 EVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKHSG 234 Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++ YTIGQR GLG+ G+P FVV ++L+ + +Y+ E + D L+ Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLKDNVLYV-EQGFHHDALYS 280 Query: 318 DAVV---------------DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361 D ++ GF+C K R Q VFV+R ND + V F + + Sbjct: 281 DYLIASDYSFVNPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITP 340 Query: 362 GQACVFYTSDSNEARVLGGGII 383 GQA VFY D LGG I Sbjct: 341 GQAVVFYQGDV----CLGGATI 358 >gi|297584733|ref|YP_003700513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus selenitireducens MLS10] gi|297143190|gb|ADH99947.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus selenitireducens MLS10] Length = 371 Score = 229 bits (583), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 140/384 (36%), Positives = 216/384 (56%), Gaps = 23/384 (5%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++ +K P+D R+VV MSGGVDSSV A LLK GY+VIG+ ++ ++ + G C A + Sbjct: 1 MNNEKRPEDTRIVVGMSGGVDSSVTAHLLKEQGYEVIGIFMKNWDD---TDEFGVCTATE 57 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D D RVC+ +++ +Y ++E+++ + V F Y +G TP P V CN+ +KF L Sbjct: 58 DYEDVIRVCNQLDIPYYAVNFEKQYWDKVFTYFLDEYKSGRTPNPDVMCNKEIKFKAFLD 117 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY +++ DG + + R D +DQ+YFL A +Q QL + FP Sbjct: 118 HAMTLGADYVATGHY--AKVSHTPDGVK---LLRGKDRNKDQTYFLNALSQDQLRHVLFP 172 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LGD++K VR++A E GL A K DS ICF+ + + + + A G++ L+G+ Sbjct: 173 LGDIEKPRVREIAEEAGLATAGKKDSTGICFIGERNFKEFLSEYLP--AQPGNMETLDGE 230 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 + G H+G++ YT+GQR+GLG+ GEP FV+ D + + ++VG +L + Sbjct: 231 VKGTHDGLMYYTLGQRQGLGIGGSGEPWFVIDKDLSRNVLLVGQGFHHPALYSEGLKADG 290 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 +NW+ A + F C VK R Q V DG V + F+++E V GQA V Sbjct: 291 VNWVAG----SAPAERFHCTVKTRYRQQDRGATVTVEPDGSVTLMFDEAERAVTPGQAVV 346 Query: 367 FYTSDSNEARVLGGGIISGSKRSD 390 FY ++ LGGG I+ +S+ Sbjct: 347 FY----DDEICLGGGTINERIKSE 366 >gi|329733069|gb|EGG69406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus 21193] Length = 372 Score = 228 bits (582), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 206/382 (53%), Gaps = 44/382 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD+RVV+ MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D D Sbjct: 4 KDIRVVIGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIE 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L LGA Sbjct: 61 VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY +R++ +DG M R +D +DQ+YFL +QQQL + FP+GD++K Sbjct: 121 DYVATGHY--ARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E GL A K DS ICF+ + + + + A GD++ L+G+ +G+H+G Sbjct: 177 EVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKHSG 234 Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++ YTIGQR GLG+ G+P FVV ++L+ + +Y+ E + D L+ Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLKDNVLYV-EQGFHHDALYS 280 Query: 318 DAVV---------------DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361 D ++ GF+C K R Q VFV+R ND + V F + + Sbjct: 281 DYLIASDYSFVNPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITP 340 Query: 362 GQACVFYTSDSNEARVLGGGII 383 GQA VFY D LGG I Sbjct: 341 GQAVVFYQGDV----CLGGATI 358 >gi|257462397|ref|ZP_05626811.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Fusobacterium sp. D12] gi|317060061|ref|ZP_07924546.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. D12] gi|313685737|gb|EFS22572.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. D12] Length = 350 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 139/371 (37%), Positives = 206/371 (55%), Gaps = 40/371 (10%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RV +A+SGGVDSS VA LLK+ GYD+ GVT++ C +D DA++VC Sbjct: 13 IRVGIALSGGVDSSTVAYLLKKRGYDIFGVTMR-------------TCHEEDA-DAKKVC 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + HYV D E F V+ F Y G TP PC+ CNR +KF LL + GA Sbjct: 59 QDLGIQHYVLDLTEDFSEKVMDYFVEEYMQGRTPNPCMVCNRHIKFGKLLDFILEQGAQY 118 Query: 141 LATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 +ATGHY + L VGDDG +DQ YFL +++L ++ FP+GD++K Sbjct: 119 MATGHYTKLVDGHLSVGDDGG------------KDQVYFLSQVPKEKLKNIIFPVGDLEK 166 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVHLNGQILGR 255 VR+LA+E+G+ + K DSQ+ICFV+ G K F ++++ + +G+IV +G+ILG+ Sbjct: 167 RQVRELAKELGVRVHAKKDSQEICFVEDGQLKQF-LIEKTKGKVYNKGNIVDRDGKILGK 225 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN-WLGDG 314 HNG+ YTIGQR+GLG++ PL+VV L+ + +IVG E L ++ N +L + Sbjct: 226 HNGLSFYTIGQRKGLGISSESPLYVVELNSERNEIIVGNNEDLMREKLIAERCNLFLVEH 285 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYTSDSN 373 L E + +C+ K RS ++ + V F + V V GQ VFY + Sbjct: 286 LEE---LHDMECYAKTRSRDSLHACRLEVVGKEIVVHFINNRVRAVTPGQGVVFY---NE 339 Query: 374 EARVLGGGIIS 384 + +V+ GG I Sbjct: 340 QGQVIAGGFIK 350 >gi|283770696|ref|ZP_06343588.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp. aureus H19] gi|283460843|gb|EFC07933.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp. aureus H19] Length = 372 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 206/382 (53%), Gaps = 44/382 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D D Sbjct: 4 KDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIE 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L LGA Sbjct: 61 VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY +R++ +DG M R +D +DQ+YFL +QQQL + FP+GD++K Sbjct: 121 DYVATGHY--TRIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E GL A K DS ICF+ + + + + A GD++ L+G+ +G+H+G Sbjct: 177 EVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKHSG 234 Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++ YTIGQR GLG+ G+P FVV ++L+ + +Y+ E + D L+ Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLKDNVLYV-EQGFHHDALYS 280 Query: 318 DAVV---------------DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361 D ++ GF+C K R Q VFV+R ND + V F + + Sbjct: 281 DYLIASDYSFVNPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAELVRAITP 340 Query: 362 GQACVFYTSDSNEARVLGGGII 383 GQA VFY D LGG I Sbjct: 341 GQAVVFYQGDV----CLGGATI 358 >gi|38233668|ref|NP_939435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium diphtheriae NCTC 13129] gi|73920122|sp|Q6NHQ7|MNMA_CORDI RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|38199929|emb|CAE49597.1| probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium diphtheriae] Length = 366 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 148/376 (39%), Positives = 203/376 (53%), Gaps = 19/376 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRV 79 MRV+ AMSGGVDS+V AA G+DV+GV L L + + CC+ +D DARRV Sbjct: 1 MRVLAAMSGGVDSAVAAARAVAAGHDVVGVHLALSQDPQTVRESSRGCCSLEDSADARRV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + + YV+D+ +RF+ VI F SSY AGETP PC+ CN +KF+ LL LG D Sbjct: 61 CDKLGIPFYVWDFSDRFKEDVIDDFISSYEAGETPNPCLRCNEKIKFAALLERGIALGFD 120 Query: 140 VLATGHYIRSRLYV-GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + TGHY R V G DG R R +D ++DQSY L ++ FP+GD K Sbjct: 121 AVVTGHYARLTQPVDGGDGYLR----RSIDPDKDQSYVLGVLGAHEIAHCMFPVGDTVKP 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R+ A MG +A K DS DICF+ G + R + G+ G IV +G L H+G Sbjct: 177 KIREEAAAMGFSVAKKPDSYDICFIPDGNTQAFLGR-HIGLR-PGMIVDSDGNELKEHDG 234 Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 NYTIGQR+GL + A G+P +V +D + V VG RE+L+V + + +L Sbjct: 235 AWNYTIGQRKGLDIKQPAADGKPRYVTNIDAATGTVTVGSRENLKVIALTADRLKYL--- 291 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 A+ F+ V++R+ V V V +DD + V+ GVA GQA V Y D Sbjct: 292 --HPAMTGSFEAEVQVRAHGSVVACSVMVNESDDTMRVELHTPLSGVARGQAAVIYLPDD 349 Query: 373 NEARVLGGGIISGSKR 388 + VLG G I ++ Sbjct: 350 DGDIVLGSGTICATEH 365 >gi|261405437|ref|YP_003241678.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paenibacillus sp. Y412MC10] gi|261281900|gb|ACX63871.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paenibacillus sp. Y412MC10] Length = 375 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 144/385 (37%), Positives = 210/385 (54%), Gaps = 25/385 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 + + K + R+VV MSGGVDSSV A LLK+ GY+VIG+ ++ ++ + G C A Sbjct: 5 ITMSKEKHNTRIVVGMSGGVDSSVTALLLKQQGYEVIGIFMKNWDD---TDELGYCTAEA 61 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D D RRVC+ +++ +Y ++E+ + + V F Y AG TP P V CNR +KF + L+ Sbjct: 62 DAEDVRRVCEQLDIPYYTVNFEKEYFDKVFSYFLDEYKAGRTPNPDVMCNREIKFGEFLN 121 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R + +DG+ R + R +D +DQ+YFL A +Q+QL FP Sbjct: 122 KAMDLGADYVATGHYARV---IEEDGQYR--LLRGVDSNKDQTYFLNALSQEQLAKAMFP 176 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NG 250 +G + K VR LA E GL A K DS +CF+ + + + + + A GD+V + G Sbjct: 177 IGHLPKPEVRRLAEEAGLYTAKKKDSTGVCFIGERNFKEFLGQYLP--AQSGDMVDIVTG 234 Query: 251 QILGRHNGIINYTIGQRR---GLGVAMGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYL 305 ++ GRH+G++ YT+GQR+ G GEP FV L N V+ G SL + Sbjct: 235 EVKGRHDGLMYYTLGQRQGLGIGGSGSGEPWFVADKDLTNNILYVVQGDHPSLYSTGLVA 294 Query: 306 REINWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQ 363 INW+ +DA+ D + C K R Q V + +DG V+V F K + + GQ Sbjct: 295 SGINWIAG---QDAMPKDAYTCTAKFRYRQPDQEVTITPREDGTVHVAFAKPQKAITPGQ 351 Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388 A VFY D LGGG I + + Sbjct: 352 AVVFYQGD----ECLGGGTIETADK 372 >gi|320335245|ref|YP_004171956.1| tRNA-specific 2-thiouridylase mnmA [Deinococcus maricopensis DSM 21211] gi|319756534|gb|ADV68291.1| tRNA-specific 2-thiouridylase mnmA [Deinococcus maricopensis DSM 21211] Length = 386 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 146/370 (39%), Positives = 201/370 (54%), Gaps = 15/370 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+ AMSGGVDSSV A LLK GYDVIG ++ + K + SCC+ Y+ARRV D Sbjct: 11 RVLCAMSGGVDSSVSAQLLKDQGYDVIGAMMRFWPDNKRTDTFDSCCSPDAAYEARRVAD 70 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + V Y+ DY + F+ ++ PF YA G TP PCV+CN VKF L+ R LG + + Sbjct: 71 QVGVPFYLLDYRDEFKRNIMDPFLEDYARGRTPNPCVNCNTKVKFDALVKKARMLGCEYV 130 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R DG R D +DQ+YFL+ T + L + FP+G M+K VR Sbjct: 131 ATGHYVRREDVPTADGGVEVQFHRGDDPRKDQTYFLWGTPRDALKYILFPVGQMEKPRVR 190 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGII 260 ++A E GL A K +SQ+ICFV G D V G IV ++ G ++G H G Sbjct: 191 EIAEEHGLLTAQKPESQNICFV-PGAVKDFVAEFVP--QRTGYIVDIHTGDVVGEHLGTQ 247 Query: 261 NYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YT+GQ++GLG+ E FVV+LD +++ V VG + + + R N+L D Sbjct: 248 FYTLGQKKGLGLYKTHEVRFVVHLDPDTNIVWVGDQVDCQWTGVRARGANYLLDVADLPQ 307 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 VD V++R PV V R D DG + F +++ V GQ+ V Y + R+L Sbjct: 308 EVD-----VQVRYRTKPVRARVLRADEDGFELAFAEAQFAVTPGQSAVLY----DGTRLL 358 Query: 379 GGGIISGSKR 388 GGG+I R Sbjct: 359 GGGLIEDHVR 368 >gi|325473540|gb|EGC76733.1| tRNA-specific 2-thiouridylase mnmA [Treponema denticola F0402] Length = 383 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 132/356 (37%), Positives = 191/356 (53%), Gaps = 12/356 (3%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+V+V +SGGVDS+V A LL GYDV GVT+QL ++ + D+ DA++V Sbjct: 18 MKVLVGLSGGVDSAVAAKLLIDQGYDVTGVTMQLLPKLSGIYKEQT----DDIEDAKKVA 73 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + H V+D E F+ +I F Y G TP PC CN +KF L + G D Sbjct: 74 AKLGIKHIVYDMRETFKAEIIDYFVEEYKQGRTPNPCFICNSKIKFGLFLEQALKDGFDK 133 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + +G+ R ++ + D+++DQSYFL TQ+QL FPLGD K+ V Sbjct: 134 IATGHYAKIE-KTEIEGEERFLLRQAEDVQKDQSYFLALLTQEQLSHSIFPLGDFTKKKV 192 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A + DSQDICFV Y V+ + AG EG + G +GRH G+ Sbjct: 193 RSIAEDAGLINAHRPDSQDICFVPDDDYTRVINALAAGSFKEGKFIDTMGNEIGRHKGLQ 252 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQRRGL +AMG P++VV D ++ V VG E L + ++N + ++ + Sbjct: 253 YYTIGQRRGLAIAMGYPVYVVKKDAKANTVTVGKDEELFAESLIASDVNIISKKTIDEEI 312 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDD-----GVYVDFEKSEVGVASGQACVFYTSD 371 K + R + + +N++ V+F + E VA GQA VFY+ D Sbjct: 313 DIEIKT--RYRQQKKKAKLIPLKNEEFKPTGKFKVEFIEPEKAVAEGQAAVFYSGD 366 >gi|296140603|ref|YP_003647846.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Tsukamurella paurometabola DSM 20162] gi|296028737|gb|ADG79507.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Tsukamurella paurometabola DSM 20162] Length = 365 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 147/380 (38%), Positives = 201/380 (52%), Gaps = 26/380 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV+GV L L + + R GS CC+ +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVEAGHDVVGVHLALSEA-PGTLRTGSRGCCSKEDAGDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ +RFR VI F ++YAAGETP PC+ CN +KFS L LG Sbjct: 60 AADVLGIPFYVWDFADRFREDVIDDFVAAYAAGETPNPCLRCNEKIKFSALAERAYALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY +RL G+ + R +D ++DQSY L T +QL FP+GD K Sbjct: 120 DAVATGHY--ARLQGGE-------LRRAVDPDKDQSYVLAVLTAEQLSRAMFPVGDTPKP 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV--HLNGQILGRH 256 +R+ A GL +ADK DS DICF+ G D + A I + V G+ LG H Sbjct: 171 LIREEAARRGLAVADKPDSHDICFIPSG---DTQAFLGARIGVRPGAVVDAATGERLGEH 227 Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G+ +TIGQR+GLG+ G P +V +D S V VG E L+V RI W Sbjct: 228 GGVHEFTIGQRKGLGLPGPGPDGAPRYVTAIDAASGEVRVGRGEQLDVTRIVADGAVWTS 287 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + + + V++R+ PV + D + +D + GVA GQA V Y D Sbjct: 288 GSVPTQPI----EAMVQVRAHGGLAPVTARAEGDRIVMDLAEPLRGVAPGQAAVLYAPDQ 343 Query: 373 NEAR-VLGGGIISGSKRSDA 391 + V+G G I + + A Sbjct: 344 DRGDLVVGSGTIRSTAHATA 363 >gi|169832175|ref|YP_001718157.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Desulforudis audaxviator MP104C] gi|205816638|sp|B1I677|MNMA_DESAP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|169639019|gb|ACA60525.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Desulforudis audaxviator MP104C] Length = 343 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 139/366 (37%), Positives = 195/366 (53%), Gaps = 26/366 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V VA+SGGVDSS A L+K G+ V +T+ N R A+ +A RV Sbjct: 4 VAVALSGGVDSSTTALLMKEAGHRVFTLTMAT-NDRVAA-------------EAARVSAF 49 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + H+V D F VI PF ++Y G TP PC+ CNR +K+ L + GAD A Sbjct: 50 LGLPHHVLDISGLFEQRVIGPFCAAYLEGRTPNPCIACNRDLKYGTLFRQAVEWGADYFA 109 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R R + R ++ R D +DQSY LF Q++L L PLGD+ KE+VR+ Sbjct: 110 TGHYARVRF---EPEPGRYVLLRARDPRKDQSYVLFYLDQERLARLLLPLGDLTKETVRE 166 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 AR G+ ++SQ+ICFV Y ++R EG V G +LGRH GI Y Sbjct: 167 KARAAGIPF-TAAESQEICFVAGDDYRTFIRRRCGQAVAEGPFVDRQGNVLGRHRGIPFY 225 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQRRGLG+A+G P+FV+ ++ + VIVGP E L +++++ L + A Sbjct: 226 TIGQRRGLGLALGRPVFVLGFNRERNAVIVGPEEELWHTAFLAVDVHYI---LPQPAGGT 282 Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGI 382 + ++ R+ P ++ Q D V FEK + + GQA VFY + RV+GGGI Sbjct: 283 LIEAQIRYRAKAAPARLYPQ-PPDAARVVFEKPQRAITPGQAAVFYQGE----RVVGGGI 337 Query: 383 ISGSKR 388 IS + R Sbjct: 338 ISCAVR 343 >gi|196232683|ref|ZP_03131534.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chthoniobacter flavus Ellin428] gi|196223143|gb|EDY17662.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chthoniobacter flavus Ellin428] Length = 363 Score = 228 bits (582), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 142/361 (39%), Positives = 185/361 (51%), Gaps = 13/361 (3%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LLKR GYDV+GVT++++ S+ + CC Q + DAR V + V Sbjct: 1 MSGGVDSSVAAYLLKRQGYDVVGVTMKVWPQDCISRAEDKCCGPQAIADARGVAHALGVP 60 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 HYV D E F VI F Y G TP PCV CN VKF +L + LGA+ +ATGHY Sbjct: 61 HYVVDEGENFERLVIDYFTEEYKNGRTPNPCVMCNEKVKFGNLWGKAKALGAEYIATGHY 120 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 + + R ++ + D +DQSYFLF+ Q QL PLG+M K +R +AR+ Sbjct: 121 A-----IIEHHADRAVLRKGRDPRKDQSYFLFSLRQAQLQHAICPLGEMSKPEIRAIARQ 175 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 +GL +A+K DSQ+ICFV Y +K + AG G I G L H GI +TIG Sbjct: 176 LGLKVAEKEDSQEICFVPGNDYKAFLKSHMGAGEFHPGGIYDKAGNRLAEHEGIEMFTIG 235 Query: 266 QRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE--DAVVDG 323 QR+GL P +V+ +D +S VIVG E L + W + + Sbjct: 236 QRKGLPGGSPRPRYVIDIDPVTSSVIVGDAEDLITGEFTIDHCMWHPSTSLRAGGSATEP 295 Query: 324 FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGI 382 F+ VKIR V ++G V K + V GQA V Y D VLGGG Sbjct: 296 FEVNVKIRYGHAGADATVYPGENGEARVRLHKPQRAVTPGQAAVCYRGDE----VLGGGW 351 Query: 383 I 383 I Sbjct: 352 I 352 >gi|148240074|ref|YP_001225461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. WH 7803] gi|205828977|sp|A5GMJ9|MNMA_SYNPW RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|147848613|emb|CAK24164.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. WH 7803] Length = 389 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 146/400 (36%), Positives = 215/400 (53%), Gaps = 34/400 (8%) Query: 3 VSEATRLNSLDLDK---NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK 59 V+ AT + LD+ P + RV V +SGGVDSS+ AALL G++V G+TL L + Sbjct: 7 VTAATPAGAEALDRLRHWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMSG-- 64 Query: 60 ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119 KG+CCA + + DA +C+ + + H+V D + F+ ++ Y AG TPLPC Sbjct: 65 ----KGACCA-EGLVDAAGICEQLEIPHHVVDSRDTFQREIVNGLIEGYQAGITPLPCSR 119 Query: 120 CNRTVKFSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLF 178 CNR VKFS +L ++ G +ATGHY R R D+ R + R +D +DQSYFL+ Sbjct: 120 CNRAVKFSPMLQWAQEKRGLARIATGHYARLRF---DETTGRWRLLRGLDARKDQSYFLY 176 Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG 238 TQ+ L + FPLG++ K R A GL A K +SQD+C + + ++A Sbjct: 177 DLTQEVLARVVFPLGELTKPDTRLEAARHGLRTAAKPESQDLCLADH--HGSMRAFLDAY 234 Query: 239 IAL-EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES 297 + +G+IV +G ++G H+GI ++TIGQR+GLGVA EPL VV LD +RV+V R+ Sbjct: 235 LPPRQGEIVLQDGTVVGEHDGIEHFTIGQRKGLGVAWSEPLHVVRLDAAMNRVVVATRDQ 294 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-----VFVQRNDDGV---- 348 + INW+ + A V++R PVP + + +D Sbjct: 295 AGRSHCVVGAINWV--SMAPPAPEHSQMVQVQVRYRSAPVPARLTTMTAEASDAAAERPH 352 Query: 349 --YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 +DF++ + + GQA VFY D+ VLGGG+I S Sbjct: 353 RCRLDFDEPQFSITPGQAAVFYDGDA----VLGGGLIQTS 388 >gi|297624808|ref|YP_003706242.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Truepera radiovictrix DSM 17093] gi|297165988|gb|ADI15699.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Truepera radiovictrix DSM 17093] Length = 372 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 146/387 (37%), Positives = 197/387 (50%), Gaps = 23/387 (5%) Query: 2 VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61 +++ + L D PK RV+ AMSGGVDSS+ AALLK GY V G L+ + + Sbjct: 1 MLAPSPTLEPQTTDAAPKG-RVLCAMSGGVDSSLAAALLKEAGYAVQGAMLRFWPDDRPK 59 Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 CC+ +DARRV D I+V Y+ D E+F VI PF +Y AG TP PCV CN Sbjct: 60 GAFDLCCSPDAAFDARRVADAIDVPFYLLDAREQFDEVVISPFVPTYEAGRTPNPCVWCN 119 Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181 R +KF L R+LG D +ATGHY+R DG + R D +DQ+YFL+A Sbjct: 120 REIKFGTFLKKARRLGCDYIATGHYVRRV-----DGPGGVELHRGEDDTKDQTYFLWALE 174 Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGI 239 + L L FPLG + K VR+LA G ADK S +CF+ Y G Sbjct: 175 RSILPHLLFPLGALSKTQVRELAEARGFATADKRSSHGLCFITTSVKDYLRDFSERRPGA 234 Query: 240 ALEGDIVHLNG-QILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRES 297 L+ +G + +G H+G+ YTIGQRRGLG+ FVV L ++ VIVG RE Sbjct: 235 VLDAS----DGFKKVGEHSGVQFYTIGQRRGLGLYHSHLERFVVDLRSETNEVIVGTREM 290 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV 357 + + NWL DA + V+ R Q PVP V+ + + F++ Sbjct: 291 CHWRGLRAEQANWL-----LDAAEVPERVLVQTRYRQRPVPASVRLSGSSFELRFDEPMF 345 Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ V Y + R+LGGG+I+ Sbjct: 346 AVTLGQSAVLY----HGTRLLGGGVIT 368 >gi|118467226|ref|YP_883033.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium avium 104] gi|118168513|gb|ABK69410.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium avium 104] Length = 352 Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 140/369 (37%), Positives = 200/369 (54%), Gaps = 24/369 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84 MSGGVDSSV AA + G+DV+GV L L ++ + R GS CC+ +D DARRV D + Sbjct: 1 MSGGVDSSVAAARMVDAGHDVVGVHLAL-STAPGTLRTGSRGCCSKEDASDARRVADVLG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV+D+ E+F+ VI F S+YA GETP PCV CN+ +KFS L + LG D +ATG Sbjct: 60 IPFYVWDFAEKFQADVIDEFVSAYARGETPNPCVTCNQKIKFSALSAKAVALGFDAVATG 119 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY R G R R R +D ++DQSY L + +QL FP+GD K +R+ A Sbjct: 120 HYARL------SGGRLR---RAVDKDKDQSYVLAVLSAEQLRHAAFPIGDTPKPQIREEA 170 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHNGIINYT 263 GL +A+K DS DICF+ G + +RI G +V+ +G +L H+G+ +T Sbjct: 171 ARRGLAVAEKPDSHDICFIPSGNTRAFLGERIG---VRRGAVVNADGTVLAEHDGVHGFT 227 Query: 264 IGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 IGQR+GLG+A G P +V +D +++ V VG L+V + R + + A Sbjct: 228 IGQRKGLGIAGPGPDGRPRYVTAIDADTATVRVGEAADLDVREMLGRAVVFTSG----TA 283 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 F+C V++R+ + + D + V GVA GQ Y D + VLG Sbjct: 284 PSGPFECAVQVRAHGETADAVAELVGDELVVRLRAPLRGVAPGQTLALYRHDPDGDEVLG 343 Query: 380 GGIISGSKR 388 I+G+ R Sbjct: 344 SATIAGTSR 352 >gi|21283300|ref|NP_646388.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus MW2] gi|49486454|ref|YP_043675.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus MSSA476] gi|297207658|ref|ZP_06924093.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911740|ref|ZP_07129183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|24638304|sp|Q8NW84|MNMA_STAAW RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|56749706|sp|Q6G8U8|MNMA_STAAS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|21204740|dbj|BAB95436.1| (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Staphylococcus aureus subsp. aureus MW2] gi|49244897|emb|CAG43358.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|296887675|gb|EFH26573.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300885986|gb|EFK81188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus TCH70] Length = 372 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 206/382 (53%), Gaps = 44/382 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D D Sbjct: 4 KDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIE 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L LGA Sbjct: 61 VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY +R++ +DG M R +D +DQ+YFL +QQQL + FP+GD++K Sbjct: 121 DYVATGHY--ARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKI 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E GL A K DS ICF+ + + + + A GD++ L+G+ +G+H+G Sbjct: 177 EVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKHSG 234 Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++ YTIGQR GLG+ G+P FVV ++L+ + +Y+ E + D L+ Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLKDNVLYV-EQGFHHDALYS 280 Query: 318 DAVV---------------DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361 D ++ GF+C K R Q VFV+R ND + V F + + Sbjct: 281 DYLIASDYSFVNPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITP 340 Query: 362 GQACVFYTSDSNEARVLGGGII 383 GQA VFY D LGG I Sbjct: 341 GQAVVFYQGDV----CLGGATI 358 >gi|78186206|ref|YP_374249.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobium luteolum DSM 273] gi|123583498|sp|Q3B625|MNMA_PELLD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|78166108|gb|ABB23206.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobium luteolum DSM 273] Length = 367 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 136/376 (36%), Positives = 200/376 (53%), Gaps = 27/376 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +V+V +SGGVDSSV A +L R+GY+V+G+ L++ S + + + R Sbjct: 4 KKKKVIVGLSGGVDSSVAACMLVREGYEVLGLHLKVLQEGDGS----TVLEPSPMTISSR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + ++ + + RFRN V+ F Y A TP PC+ CN+T+K+ LL QLGA Sbjct: 60 --EEFHIPVFTLNLAARFRNEVMDYFKEEYLAARTPNPCMVCNKTIKWRGLLEGAAQLGA 117 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ATGHY R+ DG+ R + +D ++DQSYFL+ Q++L PLG + K Sbjct: 118 DMVATGHYARTAFI---DGRHR--LFAGLDRKKDQSYFLWMLAQEELSRTILPLGGLTKP 172 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGR 255 VRDLAR GL A+K +SQ+ICFV Y ++ G+ G+I+ +GQ++G Sbjct: 173 EVRDLARSFGLTAAEKKESQEICFVPDDDYGSYLESAVPGLHRRVEGGEILDPSGQVIGH 232 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H G YTIGQRRGLG A GEPL+V +D + V GP+ +L + + +NW+G Sbjct: 233 HKGYPFYTIGQRRGLGTATGEPLYVTAIDPIGNLVHTGPKSALFSTSVEVSHLNWIGI-- 290 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-----VYVDFEKSEVGVASGQACVFYTS 370 D + KIR P + G + F++ + + GQA VFY Sbjct: 291 --DPPFAPMEATAKIRYRDHASPCTIIPLGPGPTGVTARIMFKEPKSALTPGQAAVFYRG 348 Query: 371 DSNEARVLGGGIISGS 386 + VLGGGII G+ Sbjct: 349 E----EVLGGGIIEGA 360 >gi|227503892|ref|ZP_03933941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium striatum ATCC 6940] gi|227199515|gb|EEI79563.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium striatum ATCC 6940] Length = 355 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 146/371 (39%), Positives = 198/371 (53%), Gaps = 28/371 (7%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVCDTINV 85 MSGGVDSSV AA G+DV+GV L L+ + ++ K CC+ +D DARR+CD + + Sbjct: 1 MSGGVDSSVAAARAVEAGHDVVGVHLALHKDAQQTREKARGCCSLEDSADARRICDKLGI 60 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145 YV+D+ E+F+ VI F SYA GETP PC+ CN +KF LL LG D +ATGH Sbjct: 61 PFYVWDFSEQFKEEVIGDFVDSYARGETPNPCLRCNEKIKFRALLQKGMALGFDAVATGH 120 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y + D G R R D +DQSY L + ++L FP+GD K +R+ A Sbjct: 121 YAT----LDDAGYMR----RSKDENKDQSYVLGVISAEELEHCYFPIGDTPKPQIREEAA 172 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNGIINYTI 264 G A K DS DICF+ G + + + I L G IV GQ L +H+G NYTI Sbjct: 173 RHGFSTAKKPDSYDICFIPDG---NTQAFLGSRIGLRPGMIVDQEGQELKQHDGAWNYTI 229 Query: 265 GQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 GQR+GL + A G P +V +D S V VG RE L V I + +L Sbjct: 230 GQRKGLDIKEPTADGRPRYVTDIDAASGTVTVGSREDLAVSTIQADRLKYL------HPA 283 Query: 321 VDG-FKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR- 376 +DG +C V++R+ VP +V R+ D + ++ ++ GVA GQA V Y +E Sbjct: 284 MDGELECEVQVRAHGSVVPCKAYVDRDGDKMTLELKEPLSGVARGQAAVLYLPSPDELGD 343 Query: 377 -VLGGGIISGS 386 VLG G I G+ Sbjct: 344 IVLGSGTICGT 354 >gi|87301094|ref|ZP_01083935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. WH 5701] gi|87284062|gb|EAQ76015.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. WH 5701] Length = 376 Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 143/381 (37%), Positives = 200/381 (52%), Gaps = 34/381 (8%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P + RV V +SGGVDSS+ AALL G+ V G+TL L + KG+CCA + + DA Sbjct: 5 PGEHRVAVGLSGGVDSSLTAALLVAAGWQVEGLTLWLMSG------KGACCA-EGLVDAA 57 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QL 136 +C+ + V H+V D ERFR ++ Y G TPLPC CNR VKF+ +L +L Sbjct: 58 GLCEQLGVPHHVVDSRERFREQIVEFLVQGYEGGVTPLPCSRCNREVKFTPMLEWAEAEL 117 Query: 137 GADVLATGHYIRSRLYVGDDGKR--RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 G +ATGHY R RL D G R R + R +D+ +DQSYFL+ Q L L FPLG+ Sbjct: 118 GISRIATGHYARVRL--ADAGARAGRHQLLRGLDVHKDQSYFLYDLPQAVLARLVFPLGE 175 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQIL 253 + K R A +GL A K +SQD+C + + ++A + +G IV +G ++ Sbjct: 176 LTKPDTRLEAEALGLRTARKPESQDLCLADH--HGSMKAFLDAYLPPRQGQIVLADGTVV 233 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G H+GI ++TIGQR+GLGVA EPL VV LD +RV+V PR + INW+ Sbjct: 234 GEHDGIEHFTIGQRKGLGVAWSEPLHVVRLDGAMNRVVVAPRAEAARSGCVVGAINWISI 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFV-----------QRNDDGVYVDFEKSEVGVASG 362 E + V++R PV + ++F + + + G Sbjct: 294 PPPEAP----LELEVQVRYRSAPVAAQLIPLEPTAADAAAARPHRARLNFHEEQFSITPG 349 Query: 363 QACVFYTSDSNEARVLGGGII 383 QA VFY + VLGGG+I Sbjct: 350 QAAVFYAGEV----VLGGGLI 366 >gi|254820453|ref|ZP_05225454.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium intracellulare ATCC 13950] Length = 358 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 144/377 (38%), Positives = 203/377 (53%), Gaps = 28/377 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+V+ AMSGGVDSSV AA + G+DV+GV L L +S + R GS CC+ +D DARR Sbjct: 1 MKVLAAMSGGVDSSVAAARMVDAGHDVVGVHLALSSS-PGTLRSGSRGCCSKEDASDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ E+F+ VI F SSYA GETP PCV CN+ +KFS L + LG Sbjct: 60 VADVLGIPFYVWDFAEKFQADVIDEFVSSYARGETPNPCVVCNQKIKFSALSARAVALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R G R R R +D ++DQSY L + +QL FP+GD K Sbjct: 120 DTVATGHYARL------SGGRLR---RAVDHDKDQSYVLAVLSAEQLRHAAFPIGDTPKS 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257 +R A GL +A+K DS DICF+ G D + + I + G +V+ +G +L H+ Sbjct: 171 QIRAEAARRGLAVAEKPDSHDICFIPSG---DTRAFLGSRIGVRRGAVVNADGTVLAEHD 227 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+ +TIGQR+GLG+A G P +V +D ++ V VG LEV + R Sbjct: 228 GVHGFTIGQRKGLGIAGPGPDGRPRYVTAIDAETATVRVGDVAELEVRELTGRAP----- 282 Query: 314 GLFEDAVVDG--FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 +F V +C V++R+ + + + V GVA GQ V Y D Sbjct: 283 -VFTSGVTPSGPIECAVQVRAHGETADAVAELVGGELVVRLRVPLRGVAPGQTLVLYRPD 341 Query: 372 SNEARVLGGGIISGSKR 388 + V+G +I+ + R Sbjct: 342 PDGDEVIGSAVIAATSR 358 >gi|325675868|ref|ZP_08155552.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodococcus equi ATCC 33707] gi|325553839|gb|EGD23517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodococcus equi ATCC 33707] Length = 372 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 143/385 (37%), Positives = 201/385 (52%), Gaps = 37/385 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV+GV L L ++ + R GS CC+ +D DA+R Sbjct: 1 MRVLAAMSGGVDSAVAAARAVEAGHDVVGVHLAL-STAPGTLRTGSRGCCSKEDAGDAKR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ +RF+ VI F SYAAGETP PC+ CN +KF+ L LG Sbjct: 60 AADVLGIPFYVWDFADRFKEDVIDDFVESYAAGETPNPCLRCNEKIKFAALADRAYALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R +DG+ RR +D ++DQSY L T QL FP+GD KE Sbjct: 120 DAVATGHYARL-----EDGELRRA----VDADKDQSYVLAVLTADQLSRAMFPVGDTPKE 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQG---KYFDVVKRINAGIALEGDIVHLNGQILGR 255 +R+ A GL +A+K DS DICF+ G + I G ++ D G++L + Sbjct: 171 QIREEAAARGLAVANKPDSHDICFIPSGDTRAFLGARIGIRPGAVVDAD----TGEVLAQ 226 Query: 256 HNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 H G+ +TIGQR+GLGV A G+P +V ++ + V VG L+V I W Sbjct: 227 HEGVHGFTIGQRKGLGVQGPAADGQPRYVTAIEPETGTVRVGSAARLDVWTITAERAIWT 286 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR----------NDDGVYVDFEKSEVGVAS 361 E + +C V++R+ + D G+ V + GVA Sbjct: 287 SGQAPEGPI----ECIVQVRAHGGTARAVAEAVRGERSDGEGRDGGIVVQLSEPLTGVAK 342 Query: 362 GQACVFYTSDSNEARVLGGGIISGS 386 GQA V Y D + V+G G I+G+ Sbjct: 343 GQAVVLYRPDEDGDVVIGSGTIAGT 367 >gi|110638005|ref|YP_678212.1| tRNA-specific 2-thiouridylase MnmA [Cytophaga hutchinsonii ATCC 33406] gi|110280686|gb|ABG58872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cytophaga hutchinsonii ATCC 33406] Length = 358 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 131/370 (35%), Positives = 203/370 (54%), Gaps = 18/370 (4%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDARRVCDTIN 84 MSGG+DSSV A +L GY+VIG+T++ Y + SK++ CC+ + DAR + ++ Sbjct: 1 MSGGIDSSVAAVMLHEQGYEVIGMTMKTWDYANLGGSKKETGCCSLDSINDARNIAVSLG 60 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 HY+ D E F + VI F Y G TP PCV CN +K+ LL ++ D +ATG Sbjct: 61 FPHYIVDIREEFGDYVINHFNKEYLDGRTPNPCVLCNTHIKWDSLLRRADKMDCDFIATG 120 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY + R R ++ + +D +DQSY L+ +QQ L FPLG + K +R +A Sbjct: 121 HYAQVR-----SENNRFVISKGLDENKDQSYALWGISQQSLSRTMFPLGHLHKTDIRAMA 175 Query: 205 REMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRHNGII 260 E G +D+ +KS+S +ICFV Y +KR N G+ E G+ V +G ++G+H G Sbjct: 176 AERGFMDLVNKSESYEICFVPDNDYRGFLKRRNPGLEEEVRGGEFVMEDGTVVGKHEGYP 235 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQR+GLG+ +G P+FV + K ++RV++G E L + +++ + L +E+ Sbjct: 236 FYTIGQRKGLGITLGYPVFVTEIQKENNRVVLGREEGLNRNGMWVDQ---LIMSKYENLK 292 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 + K+R + D +++ D + V F + +A GQA VFY + V+GG Sbjct: 293 GIQKQSITKVRYNDDGTSSTIEQVGDEMRVLFHEHVKAIAPGQAAVFYEGND----VIGG 348 Query: 381 GIISGSKRSD 390 G I S + D Sbjct: 349 GWIKSSFKQD 358 >gi|163840418|ref|YP_001624823.1| tRNA-specific 2-thiouridylase MnmA [Renibacterium salmoninarum ATCC 33209] gi|189040507|sp|A9WMS3|MNMA_RENSM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|162953894|gb|ABY23409.1| tRNA methyl transferase [Renibacterium salmoninarum ATCC 33209] Length = 378 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 143/380 (37%), Positives = 203/380 (53%), Gaps = 25/380 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+V+ AMSGGVDS+V AA G++V+GV L L + + R GS CC +D DA + Sbjct: 1 MKVLAAMSGGVDSAVAAARTVEAGHEVVGVHLAL-SRMPGTLRTGSRGCCTIEDSTDAWK 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + +YV+D+ ERF+ V+ F + YAAG TP PC+ CN +KF+ LL LG Sbjct: 60 ACEKLGIPYYVWDFSERFKEDVVDDFIAEYAAGRTPNPCMRCNERIKFAALLEKAIALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197 D + TGHY R V D + R D +DQSY L T +QL FPL D + K Sbjct: 120 DAVCTGHYAR----VAQDEDGNYELHRASDWAKDQSYVLGVLTHEQLKHSMFPLSDAQTK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRH 256 VR A GL +A K DS DICF+ G + ++I+ G+I+ +G +G H Sbjct: 176 AEVRAEADRRGLSVAKKPDSHDICFISDGDTRGWLAEKID---MTPGEILDQSGAKVGTH 232 Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G +T+GQRRGL + A G+P FV+ + + V+VGP + L ++ I +I+W G Sbjct: 233 EGANAFTVGQRRGLKLGTPAADGKPRFVLEIRPKENTVVVGPEQMLAMNEIRGIKISWAG 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVP--VFVQRNDDG---VYVDFEKSEVGVASGQACVF 367 + + E F C ++R+ DPVP FV +DDG + V+ GVA GQ V Sbjct: 293 EPIAEVGAGTEFDCMAQVRAHGDPVPARAFVTTDDDGAPLLVVNLIDPLRGVAPGQTVVL 352 Query: 368 YTSDSNEARVLGGGIISGSK 387 Y RVLG I ++ Sbjct: 353 YQG----TRVLGQATIDTAR 368 >gi|212638582|ref|YP_002315102.1| tRNA-specific 2-thiouridylase MnmA [Anoxybacillus flavithermus WK1] gi|212560062|gb|ACJ33117.1| tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase [Anoxybacillus flavithermus WK1] Length = 371 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 145/367 (39%), Positives = 198/367 (53%), Gaps = 23/367 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D D RVC+ Sbjct: 9 RVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDYEDVVRVCN 65 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+++ V F Y AG TP P V CN+ +KF L LGAD L Sbjct: 66 QIGIPYYAVNFEKQYWEKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHAMALGADYL 125 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R DG+ + + R +D +DQ+YFL Q QL + FP+G+++K VR Sbjct: 126 ATGHYARVAY---RDGEYQ--LLRGLDANKDQTYFLNQLGQAQLSKVLFPIGELQKSKVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A+E GL A K DS ICF+ + + + N A G++ L+G++ G H+G++ Sbjct: 181 EIAKEAGLATAGKKDSTGICFIGERNFKQFLS--NYLPAQPGEMQTLDGEVKGTHDGLMY 238 Query: 262 YTIGQRRGLGV-AMGEPLFVV--YLDKNSSRVIVG-PRESLEVHRIYLREINWLGDGLFE 317 YTIGQR GLG+ GEP FVV L N V G E L I +NW+ D Sbjct: 239 YTIGQRHGLGIGGSGEPWFVVGKNLKDNILYVAQGFDNELLYSDAIIATNVNWVSDRKPN 298 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEAR 376 + + C K R Q VPV V+ D+ V F + V GQA VFY N + Sbjct: 299 EPIA----CTAKFRYRQPDVPVTVEMIDETTARVSFSQRVRAVTPGQAVVFY----NGEQ 350 Query: 377 VLGGGII 383 LGGG I Sbjct: 351 CLGGGTI 357 >gi|229543733|ref|ZP_04432793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus coagulans 36D1] gi|229328153|gb|EEN93828.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus coagulans 36D1] Length = 371 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 147/391 (37%), Positives = 210/391 (53%), Gaps = 26/391 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K PKD RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MQKAPKDTRVVVGMSGGVDSSVAAYLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 NDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY R DG+ + M R +D +DQ+YFL Q QL + FP+G Sbjct: 118 LNLGADYLATGHYARV---THQDGEYK--MLRGVDGNKDQTYFLNQLGQYQLSRVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 D++K VR++A+E GL A+K DS ICF+ + + + + A +G + L+G+++ Sbjct: 173 DLEKPRVREIAKEAGLATANKKDSTGICFIGERNFKEFLSHYLP--AQKGLMKTLDGKVM 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYLREI--N 309 G H G++ YTIGQR GLG+ GEP F V D K + + ++ Y+ + N Sbjct: 231 GEHEGLMYYTIGQRHGLGIGGSGEPWFAVGKDLKENVLYVEQGFHHPALYSDYMTGVKAN 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + F+C K R Q V VQ +D V V +++ V GQA VFY Sbjct: 291 WVSGKKPPEV----FRCTAKFRYRQPDQKVTVQLLGNDEVKVIYDEPVRAVTPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSV 399 N LGG I ++ EE L+ V Sbjct: 347 ----NGEECLGGATIDKIYKN---EEQLMYV 370 >gi|225621511|ref|YP_002722770.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brachyspira hyodysenteriae WA1] gi|225216332|gb|ACN85066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brachyspira hyodysenteriae WA1] Length = 352 Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 131/369 (35%), Positives = 201/369 (54%), Gaps = 27/369 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD---VYDARR 78 ++ V MS GVDS+ A LLK G DV GVT+ L+N + + GSC + V + + Sbjct: 3 KIAVGMSAGVDSTTTAKLLKEQGNDVFGVTMLLWNGDERAPLSGSCYSPYQKNIVEECEK 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 I + +Y FD E F+ VI SY G TP PC+ CN +KF L + G Sbjct: 63 YAKAIGIDYYAFDISEMFQKKVIDYVTESYKKGFTPNPCIMCNSQIKFMALFEAIEKQGL 122 Query: 139 --DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 D ATGHY + D+ +R ++ R +L +DQSYFL+ TQ QL + FP+ + Sbjct: 123 EFDKFATGHYAGVKY---DEKTKRYLLLRGKNLIKDQSYFLYRLTQDQLSKIMFPMHENT 179 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGR 255 KE R++ARE LD+A+KS+SQD + + FD K EG I++++ +ILG Sbjct: 180 KEDTRNIAREYNLDVAEKSESQDFFAGEYHRLFDEDK--------EGSIINIDTNEILGH 231 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H GI +YT+GQR+GLG+A EPLF+V LD ++ V VG + V+ + + ++NW+ + Sbjct: 232 HKGIWHYTVGQRKGLGIAYKEPLFIVALDSETNTVYVGNKNHTFVNEVKIYDVNWIAEPK 291 Query: 316 FEDAVVDGFKCFVKIRSSQD-PVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 ++ F+ VK RS+ + + +++ + + F + +A GQ+CV Y +D Sbjct: 292 QKE-----FEALVKTRSAHKGTMAAVIPIDENTINIKFHEPTGIIAKGQSCVCYDNDI-- 344 Query: 375 ARVLGGGII 383 L GGI+ Sbjct: 345 --TLCGGIV 351 >gi|123969022|ref|YP_001009880.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str. AS9601] gi|205816921|sp|A2BSL2|MNMA_PROMS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|123199132|gb|ABM70773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus str. AS9601] Length = 385 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 143/377 (37%), Positives = 210/377 (55%), Gaps = 32/377 (8%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++V +SGGVDSS+ AALL G++V G+TL L K +GSCC+ + + DA +C+ Sbjct: 26 IIVGLSGGVDSSLSAALLVERGWNVEGLTLWLM------KGQGSCCS-EGLVDAAGLCED 78 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVL 141 + ++H + D E F VI SY G TPLPC CN+ VKF ++L+ + + Sbjct: 79 LGINHKIIDSREIFEREVIKKTTESYEKGFTPLPCSMCNKNVKFEEMLNYAISKKDFTHI 138 Query: 142 ATGHYIR---SRLYVGDDGK----RRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 ATGHY R S D K + ++ R D +DQSYFL++ +Q+ L L FPLG+ Sbjct: 139 ATGHYARINKSSYATTLDCKNLVFKEFLLLRGADENKDQSYFLYSLSQEVLSRLEFPLGE 198 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQIL 253 MKKE R A +GL A K +SQD+C V+ Y + I+ I EG+IVH+NG++L Sbjct: 199 MKKEDTRREALRLGLRTAQKPESQDLCLVEH--YGSMQIFIDKHIEPKEGEIVHVNGKVL 256 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+HNGI ++T+GQR+GLG+A EPL+V LD+ + V V + L + ++NW+ Sbjct: 257 GKHNGIQHFTVGQRKGLGIAWPEPLYVKSLDRLKNIVYVADKSDLFNKEAIISKVNWVSI 316 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPV--PVFVQRNDDGVYVD----FEKSEVGVASGQACVF 367 E + + +IR +PV + +N D FE+S+ V GQA VF Sbjct: 317 EEPEQEI----EVQAQIRYRSNPVKGTLIPLKNLDNTTTTFKLIFEESQSSVTPGQAAVF 372 Query: 368 YTSDSNEARVLGGGIIS 384 Y + +LGGG+IS Sbjct: 373 YKGEI----LLGGGLIS 385 >gi|325103525|ref|YP_004273179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pedobacter saltans DSM 12145] gi|324972373|gb|ADY51357.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pedobacter saltans DSM 12145] Length = 362 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 202/372 (54%), Gaps = 20/372 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDA 76 K R++VAMSGGVDSSV A +L GY+VIG+T++ Y S A+ ++ CC+ + DA Sbjct: 3 KHGRILVAMSGGVDSSVAAVMLHEQGYEVIGLTMKTWDYASSGANSKETGCCSLDSINDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + HY+ D F + VI F Y AG TP PCV CN +K+ LL +L Sbjct: 63 RSLAVGYGFPHYILDIRNEFGDYVIDNFVDEYLAGRTPNPCVLCNTHIKWEALLKRADKL 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 + +ATGHY R D+G R ++ + D +DQSY L+ +Q+ L +FPLG Sbjct: 123 DCEFIATGHYANIRQQ--DNG--RYVISKGRDENKDQSYVLWGVSQENLARTKFPLGSFT 178 Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKR----INAGIALEGDIVHLNGQ 251 K +R +A +MG D+A KS+S +ICFV Y +K + A +A GD V ++G Sbjct: 179 KAEIRQMAFDMGQEDLAKKSESYEICFVPDNDYRSFLKHRVPELEADVA-GGDFVLVDGT 237 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 +G+H G YTIGQR+GLG+A+G+P+FV + S+ V++G L+ +R +N + Sbjct: 238 KVGKHQGYPFYTIGQRKGLGIALGKPMFVTQILPESNTVVLGEEADLQRREATVRNLNLI 297 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 ++ + + KIR + + D + V+F S G+A GQ+ VFY + Sbjct: 298 KYA----SINEPLEAITKIRYKDPGTLSHIHQEGDIMKVNFHHSVTGIAPGQSAVFYEGN 353 Query: 372 SNEARVLGGGII 383 +LGGG + Sbjct: 354 D----LLGGGFL 361 >gi|321312277|ref|YP_004204564.1| tRNA-specific 2-thiouridylase MnmA [Bacillus subtilis BSn5] gi|291485158|dbj|BAI86233.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Bacillus subtilis subsp. natto BEST195] gi|320018551|gb|ADV93537.1| tRNA-specific 2-thiouridylase MnmA [Bacillus subtilis BSn5] Length = 371 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 143/375 (38%), Positives = 205/375 (54%), Gaps = 22/375 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P+D RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVIRVCNQIGIPYYAVNFEKQYYEKVFQYFLDEYKAGRTPNPDVLCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY R V G++ R M R +D +DQ+YFL T+ L + FP+G Sbjct: 118 LSLGADYLATGHYAR----VDRSGEKVR-MLRGIDENKDQTYFLNQLTEDTLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR++A+E L A K DS ICF+ + + + + A GD++ ++G++ Sbjct: 173 ELQKSRVREIAKEAELATATKKDSTGICFIGERNFKTFLSQYLP--AQPGDMMTMDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVH-RIYLREIN 309 GRH+G++ YTIGQR GLG+ GEP F V L+KN V G L +I I+ Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W+ + + + C K R Q+ V V+ +G V F++ V GQA VFY Sbjct: 291 WVRSDIMKGEEI---SCTAKFRYRQEDHKVTVRMTGEGEAEVIFDEQVRAVTPGQAVVFY 347 Query: 369 TSDSNEARVLGGGII 383 + LGGG I Sbjct: 348 DGEE----CLGGGTI 358 >gi|169829330|ref|YP_001699488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lysinibacillus sphaericus C3-41] gi|205816875|sp|B1HUL3|MNMA_LYSSC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|168993818|gb|ACA41358.1| Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lysinibacillus sphaericus C3-41] Length = 374 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 133/371 (35%), Positives = 208/371 (56%), Gaps = 18/371 (4%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 ++P +RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ ++ + G C A +D D Sbjct: 5 RDPSQIRVVVGMSGGVDSSVAAYLLKQQGYEVIGIFMKNWDD---TDENGVCTATEDYDD 61 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 +VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 62 VIKVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHAMS 121 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD LATGHY +R+ DG+ + M R +D +DQ+YFL +Q+QL + FP+GD+ Sbjct: 122 LGADYLATGHY--ARIDRSGDGEVK--MLRGVDNNKDQTYFLNQLSQEQLAHVMFPIGDI 177 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K+ VR +A E GL A K DS ICF+ + + + + + A G++ ++G ++G+ Sbjct: 178 EKKEVRKIAEEAGLATAKKKDSTGICFIGERNFKEFLSQFLP--AQPGNMETMDGVVMGK 235 Query: 256 HNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H+G++ YT+GQR GLG+ GEP FV+ D + ++VG + + +Y ++ + Sbjct: 236 HDGLMYYTLGQRHGLGIGGDGEPWFVLGKDLERNVLLVG--QGFDNEHLYSTSLSAVKMN 293 Query: 315 LFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 + G F C K R Q PV V+ DG ++ F + + GQA V Y + Sbjct: 294 YTSTKKLPGKFSCTAKFRYRQTDTPVEVELLADGRTHITFAEPVRAITPGQAVVLYDGE- 352 Query: 373 NEARVLGGGII 383 +GGG I Sbjct: 353 ---ECIGGGTI 360 >gi|229828822|ref|ZP_04454891.1| hypothetical protein GCWU000342_00905 [Shuttleworthia satelles DSM 14600] gi|229791985|gb|EEP28099.1| hypothetical protein GCWU000342_00905 [Shuttleworthia satelles DSM 14600] Length = 361 Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 135/365 (36%), Positives = 194/365 (53%), Gaps = 16/365 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRVC 80 VVV MSGGVDSSV A LLK +GY VIGVT+Q++ A + G CC V DARRV Sbjct: 7 VVVGMSGGVDSSVAAYLLKEEGYRVIGVTMQIWQDESACSLEEHGGCCGLSAVEDARRVA 66 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 I + HYV +++ F++ VI F Y G TP PC+ CNR VK+ LL + +GAD Sbjct: 67 RMIGIPHYVMNFKAEFQDRVIDYFTDEYLRGRTPNPCIACNRYVKWESLLERSLAIGADY 126 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R V R + + +DQ+Y L+ TQ+QL P+GD K + Sbjct: 127 IATGHYAR----VEHLANGRYAVRNSVTAAKDQTYALYNLTQEQLAHTLMPVGDYDKPRI 182 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG-IALEGDIVHLNGQILGRHNGI 259 R++A GL +A K+DS+DICF+ Y ++R I G+ V +G ++GRH GI Sbjct: 183 REIALAAGLPVAHKADSEDICFIPDHDYASFLEREAPDRIPEPGNFVLEDGSVIGRHQGI 242 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQR+GLG++ PLFV + S+ V++ +E + + +N + F+ Sbjct: 243 SHYTIGQRKGLGISWDSPLFVKEIRPGSNEVVLTSKEGVFTDHLTFENVNHMAVEAFQ-- 300 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 G + KIR S ++ + + + F + V GQA V Y + + Sbjct: 301 --PGEEYLAKIRYSDPGCMCRIEAVGQERIRLAFSRKVRAVTPGQALVLYQGEF----IA 354 Query: 379 GGGII 383 GGG I Sbjct: 355 GGGTI 359 >gi|329926781|ref|ZP_08281189.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paenibacillus sp. HGF5] gi|328938981|gb|EGG35349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paenibacillus sp. HGF5] Length = 389 Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 143/385 (37%), Positives = 210/385 (54%), Gaps = 25/385 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 + + K + R+VV MSGGVDSSV A LLK+ GY+VIG+ ++ ++ + G C A Sbjct: 19 ITMSKEKHNTRIVVGMSGGVDSSVTALLLKQQGYEVIGIFMKNWDD---TDELGYCTAEA 75 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D D RRVC+ +++ +Y ++E+ + + V F Y AG TP P V CNR +KF + L+ Sbjct: 76 DAEDVRRVCEQLDIPYYTVNFEKEYFDKVFSYFLDEYKAGRTPNPDVMCNREIKFGEFLN 135 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R + +DG+ R + R +D +DQ+YFL A +Q+QL FP Sbjct: 136 KAMDLGADYVATGHYARV---IEEDGQYR--LLRGVDSNKDQTYFLNALSQEQLSKAMFP 190 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NG 250 +G + K VR LA E GL A K DS +CF+ + + + + + A GD+V + G Sbjct: 191 IGHLPKPEVRRLAEEAGLYTAKKKDSTGVCFIGERNFKEFLGQYLP--AQSGDMVDIVTG 248 Query: 251 QILGRHNGIINYTIGQRR---GLGVAMGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYL 305 ++ GRH+G++ YT+GQR+ G GEP FV L N V+ G SL + Sbjct: 249 EVKGRHDGLMYYTLGQRQGLGIGGSGSGEPWFVADKDLTNNILYVVQGDHPSLYSTGLVA 308 Query: 306 REINWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQ 363 +NW+ +DA+ D + C K R Q V + +DG V+V F K + + GQ Sbjct: 309 SGMNWIAG---QDAMPKDAYACTAKFRYRQPDQEVTITPREDGTVHVAFAKPQKAITPGQ 365 Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388 A VFY D LGGG I + + Sbjct: 366 AVVFYQGDD----CLGGGTIETADK 386 >gi|290969182|ref|ZP_06560707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Megasphaera genomosp. type_1 str. 28L] gi|290780688|gb|EFD93291.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Megasphaera genomosp. type_1 str. 28L] Length = 362 Score = 226 bits (576), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 139/366 (37%), Positives = 197/366 (53%), Gaps = 14/366 (3%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR---KASKRKGSCCAGQDVYDARRV 79 V VAMSGGVDSSV A LL+R G DVIG+TL+L+ + + ++ +CC+ V DA+ V Sbjct: 5 VAVAMSGGVDSSVTAGLLQRRGLDVIGITLRLWEAPPTCEVTENIHACCSLSAVEDAKAV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + HY D+ + F VI F +Y G+TP PC+ CN+ +KF L +Q GAD Sbjct: 65 ADVLGIPHYTLDFRDVFSQDVITYFIQAYKDGKTPNPCIACNKWIKFGLLWQRAQQFGAD 124 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 LATGHY R V D ++ + R D +DQSY L+ Q L + FP+ ++ K Sbjct: 125 FLATGHYAR---IVYDARRKVYSLLRGADRRKDQSYVLYQLQQDLLPHILFPMAELTKTE 181 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R LA+E L + +K +SQDICF+ Y ++ + G+ V G++LG H GI Sbjct: 182 TRRLAKEWHLPVFNKPESQDICFIPDNDYKKFLRSRAPQHFIPGNFVDKEGRVLGTHAGI 241 Query: 260 INYTIGQRR-GLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 YT+GQRR G P +V LD +RVIVG L + ++E+ W+ E+ Sbjct: 242 PCYTVGQRRGLHLGGPGGPYYVTALDVPHNRVIVGGAADLFRTAVEVQEVTWV-----EE 296 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 F KIR + P V +D + V+F + V +GQA V Y + + E RV Sbjct: 297 TPETDFSALGKIRYAAKEAPCRVHVSDGARMRVEFVTPQRAVTAGQALVLYDAATGE-RV 355 Query: 378 LGGGII 383 LGGGII Sbjct: 356 LGGGII 361 >gi|314936263|ref|ZP_07843610.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus hominis subsp. hominis C80] gi|313654882|gb|EFS18627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus hominis subsp. hominis C80] Length = 370 Score = 226 bits (576), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 141/380 (37%), Positives = 207/380 (54%), Gaps = 42/380 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD+RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 4 KDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIA 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L +LGA Sbjct: 61 VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY +R++ +DG M R +D +DQ+YFL +Q+QL + FP+GD++K+ Sbjct: 121 DYVATGHY--ARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQEQLSKVMFPIGDIEKK 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E L A K DS ICF+ + + + + A G++ LNG+ +G H+G Sbjct: 177 DVRKIAEEQDLATAKKKDSTGICFIGERNFKSFLSQYLP--AQSGEMRTLNGKKMGIHSG 234 Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++ YTIGQR GLG+ G+P FVV ++LE + +Y+ E + D L+ Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLEDNILYV-EQGFHHDALYS 280 Query: 318 DAVV-------------DGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363 D ++ +GF+C K R Q VFVQ+ D+ + V F++ + GQ Sbjct: 281 DYLIASDASFVNPVDLENGFECTAKFRYRQKDTKVFVQKEDEQSIRVTFDEPVRAITPGQ 340 Query: 364 ACVFYTSDSNEARVLGGGII 383 A VFY N LGG I Sbjct: 341 AVVFY----NGEVCLGGATI 356 >gi|78185088|ref|YP_377523.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. CC9902] gi|123580788|sp|Q3AV73|MNMA_SYNS9 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|78169382|gb|ABB26479.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. CC9902] Length = 389 Score = 226 bits (576), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 140/387 (36%), Positives = 207/387 (53%), Gaps = 39/387 (10%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 L + P + RV V +SGGVDSS+ AALL G++V G+TL L + KG+CCA + + Sbjct: 18 LRQWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMSG------KGACCA-EGL 70 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-V 132 DA +C+ + + H+V D E F+ ++ Y G TPLPC CNR+VKF +L Sbjct: 71 VDAAGICEQLGIPHHVVDTRETFQKEIVQRLVDGYQDGITPLPCSQCNRSVKFGPMLEWA 130 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 ++ +ATGHY R R + GD G+ + + R +D +DQSYFL+ Q+ L + FPL Sbjct: 131 AQERNLPRIATGHYARIR-HGGDCGRHQ--LLRGLDSRKDQSYFLYDLPQEALGRIVFPL 187 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQG----KYFDVVKRINAGIALEGDIVHL 248 G++ K R A GL A+K +SQD+C + D +G+IV Sbjct: 188 GELTKADTRIEAGRHGLRTAEKPESQDLCLADHHGSMRAFLDTYLPPR-----QGEIVLK 242 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G ++G H+GI ++TIGQR+GLGVA EPL VV LD +RV+V PR H + I Sbjct: 243 DGTVVGEHDGIEHFTIGQRKGLGVAWQEPLHVVKLDPAMNRVVVAPRAEAGRHEAVVGAI 302 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPV-----PVFVQRNDDG------VYVDFEKSEV 357 NW+ D + V++R PV P+ +D ++ F++ + Sbjct: 303 NWVSI----DPPLQAMNLEVQVRYRSAPVTARLTPLPATDDDHQRQRPHRCHLVFDEDQF 358 Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384 +A GQA VFY+ D+ VLGGG++ Sbjct: 359 SIAPGQAAVFYSDDT----VLGGGLLQ 381 >gi|116671273|ref|YP_832206.1| tRNA-specific 2-thiouridylase MnmA [Arthrobacter sp. FB24] gi|166234843|sp|A0JYI6|MNMA_ARTS2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|116611382|gb|ABK04106.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arthrobacter sp. FB24] Length = 379 Score = 226 bits (576), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 148/384 (38%), Positives = 201/384 (52%), Gaps = 29/384 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV+GV L L + + R GS CC +D DA R Sbjct: 1 MRVLAAMSGGVDSAVAAARAVEAGHDVVGVHLAL-SRMPGTLRTGSRGCCTIEDSRDAWR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 CD + + +YV+D+ ERF+ V+ F YAAG TP PC+ CN +KF+ LL LG Sbjct: 60 ACDVLGIPYYVWDFSERFKEDVVQDFIDEYAAGRTPNPCMRCNERIKFAALLEKAIALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197 D + TGHY +++ DG + R D +DQSY L T +QL FPL D K Sbjct: 120 DAVCTGHY--AKVITDADGNPE--LHRAADWAKDQSYVLGVLTHEQLKHSMFPLADTPSK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRH 256 VR A GL +A+K DS DICF+ G D + I + GDIV G +G H Sbjct: 176 AEVRAEAERRGLSVANKPDSHDICFIPDG---DTAGWLAEKIEMTTGDIVDEAGTKVGEH 232 Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G +T+GQRRGL + A G+P FV+ + ++V+VGP L + I +++W G Sbjct: 233 PGANAFTVGQRRGLKLGTPAADGKPRFVLEIRPKENKVVVGPEALLAIDEIRGIKVSWAG 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ----RNDDG-----VYVDFEKSEVGVASGQ 363 + E A D F C ++R+ DPVP + +DDG + V GVA GQ Sbjct: 293 LPIAEVATGDEFDCHAQVRAHGDPVPATARMERLTDDDGAERTNLVVTLATPLRGVAPGQ 352 Query: 364 ACVFYTSDSNEARVLGGGIISGSK 387 V Y +RVLG I ++ Sbjct: 353 TVVLYQG----SRVLGQATIDTAR 372 >gi|227499265|ref|ZP_03929377.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaerococcus tetradius ATCC 35098] gi|227218674|gb|EEI83905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaerococcus tetradius ATCC 35098] Length = 367 Score = 226 bits (576), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 138/373 (36%), Positives = 207/373 (55%), Gaps = 24/373 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+ KD +VVV +SGGVDSSV A LLK +GYDV+G+ ++ ++ + G C A D D Sbjct: 2 KDKKDTKVVVGISGGVDSSVAALLLKEEGYDVVGIFMKNWDD---TDENGVCTAEVDYED 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A VC+ I++ +Y ++E+ + + V F Y G TP P + CN+ +KF L + Sbjct: 59 AVAVCNQIDIPYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAKS 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY R D +M R +D +DQ+YFL +Q+Q+ D+ FP+G++ Sbjct: 119 LGADFVATGHYARV-----DRSADETVMLRGVDSNKDQTYFLSQLSQEQIKDVLFPVGEL 173 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR++A + L ADK DS ICF+ + + + + N A EG+IV G ILGR Sbjct: 174 EKSQVREIAHKYKLATADKKDSTGICFIGERDFNEFLS--NYLPAQEGNIVDTEGNILGR 231 Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWL 311 H G++ +TIGQRRGLG+ GE FV D + +IV ++ L +++Y E + + Sbjct: 232 HEGLMFHTIGQRRGLGIGGEGEAWFVCGKDLKKNELIVCQGKNNPLLFSNKLYASEFSTI 291 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 D + + F C K R Q + V+ DG + V +++++ V GQA VFY Sbjct: 292 SD----KEIPEEFSCTAKFRYRQADINAHVKVLGDGKIEVTYDRTK-AVTPGQAAVFYLG 346 Query: 371 DSNEARVLGGGII 383 D LG II Sbjct: 347 DV----CLGSAII 355 >gi|152976810|ref|YP_001376327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189036217|sp|A7GT74|MNMA_BACCN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|152025562|gb|ABS23332.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cytotoxicus NVH 391-98] Length = 371 Score = 226 bits (576), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 144/383 (37%), Positives = 205/383 (53%), Gaps = 27/383 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL Q+QL FPLG Sbjct: 118 MALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLGQEQLSKTMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 173 ELKKPQIREMAKEAGLATATKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307 G+H+G++ YTIGQR GLG+ G+P FVV KN I+ + +Y E Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGNGDPWFVV--GKNLKENILYVDQGFHNELLYGDEVIATN 288 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 +NW+ D E FKC K R Q+ V VQ D+ + + ++ + GQA V Sbjct: 289 VNWVSDRAKEKE----FKCTAKFRYRQEDNGVTVQIVDENTIRILCDEPIRAITPGQAVV 344 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 FY D LGG I RS Sbjct: 345 FYDGD----ECLGGATIDEVYRS 363 >gi|221310688|ref|ZP_03592535.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus subtilis subsp. subtilis str. 168] gi|221315011|ref|ZP_03596816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319932|ref|ZP_03601226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus subtilis subsp. subtilis str. JH642] gi|221324213|ref|ZP_03605507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus subtilis subsp. subtilis str. SMY] gi|255767628|ref|NP_390627.3| tRNA-specific 2-thiouridylase MnmA [Bacillus subtilis subsp. subtilis str. 168] gi|254763446|sp|O35020|MNMA_BACSU RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|225185256|emb|CAB14691.3| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Bacillus subtilis subsp. subtilis str. 168] Length = 371 Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 143/375 (38%), Positives = 204/375 (54%), Gaps = 22/375 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P+D RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVIRVCNQIGIPYYAVNFEKQYYEKVFQYFLDEYKAGRTPNPDVLCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY R V G + R M R +D +DQ+YFL T+ L + FP+G Sbjct: 118 LSLGADYLATGHYAR----VDRSGGKVR-MLRGIDENKDQTYFLNQLTEDTLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR++A+E L A K DS ICF+ + + + + A GD++ ++G++ Sbjct: 173 ELQKSRVREIAKEAELATATKKDSTGICFIGERNFKTFLSQYLP--AQPGDMMTMDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVH-RIYLREIN 309 GRH+G++ YTIGQR GLG+ GEP F V L+KN V G L +I I+ Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W+ + + + C K R Q+ V V+ +G V F++ V GQA VFY Sbjct: 291 WVRSDIMKGEEI---SCTAKFRYRQEDHKVTVRMTGEGEAEVIFDEQVRAVTPGQAVVFY 347 Query: 369 TSDSNEARVLGGGII 383 + LGGG I Sbjct: 348 DGEE----CLGGGTI 358 >gi|327439665|dbj|BAK16030.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Solibacillus silvestris StLB046] Length = 372 Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 135/372 (36%), Positives = 201/372 (54%), Gaps = 18/372 (4%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 ++P +RVV+ MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D D Sbjct: 5 RDPSQIRVVIGMSGGVDSSVAAYLLKQQGYDVIGIFMKNWDD---TDEFGVCTATEDYDD 61 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 62 VIAVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHALA 121 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD LATGHY +R+ ++G + M R +D +DQ+YFL T +QL + FP+G + Sbjct: 122 LGADYLATGHY--ARVAHDENGVK---MLRGIDNNKDQTYFLNQLTSEQLEKVMFPIGHL 176 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K VR +A E GL A K DS ICF+ + + + + + A G++ +G++ G Sbjct: 177 PKPEVRKIAEEAGLATAKKKDSTGICFIGERNFKEFLSQYLP--AQPGNMETFDGEVKGT 234 Query: 256 HNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H+G++ YT+GQR GLG+ GEP FVV D + + VG + +Y + + Sbjct: 235 HDGLMYYTLGQRHGLGIGGDGEPWFVVGKDLTRNVLYVG--QGFHHDALYSDALTAVKMS 292 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSN 373 +A F C K R Q+ PV V +DG Y++F + + GQA V Y + Sbjct: 293 FTGEAKTGTFNCTAKFRYRQEDSPVTVTMREDGTAYIEFAEPVRAITPGQAVVLYDGE-- 350 Query: 374 EARVLGGGIISG 385 LGGG I G Sbjct: 351 --ECLGGGTIDG 360 >gi|317128230|ref|YP_004094512.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cellulosilyticus DSM 2522] gi|315473178|gb|ADU29781.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cellulosilyticus DSM 2522] Length = 367 Score = 226 bits (575), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 135/375 (36%), Positives = 213/375 (56%), Gaps = 21/375 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ +++RVVV MSGGVDSSV A LLK++GY VIG+ ++ ++ + G C A +D Sbjct: 2 MNTEKQNIRVVVGMSGGVDSSVAAYLLKQEGYQVIGIFMKNWDD---TDEFGVCTATEDY 58 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ +++ +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 59 NDVIRVCNQLDIPYYAVNFEKEYWDKVFTYFLNEYRAGRTPNPDVMCNKEIKFKAFLDHA 118 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R R D+G + R +D +DQ+YFL A ++ QL + FP+G Sbjct: 119 MSLGADYVATGHYARVRH--SDNGVE---LLRGIDENKDQTYFLNALSEDQLKHVLFPIG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR++A+E L A K DS ICF+ + + + + + A G++ L+G++ Sbjct: 174 EIEKPRVREIAKEAHLATATKKDSTGICFIGERNFKEFLSQYLP--AQRGEMQTLDGEVK 231 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G H+G++ YT+GQR+GLG+ GEP FV+ D + + ++VG +L + ++N Sbjct: 232 GYHDGLMYYTLGQRQGLGIGGAGEPWFVIDKDLDKNILLVGQGYHHPALYSSGLIAEDVN 291 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W+ L + F C K R Q V V +DG V V F++ E + GQ+ VFY Sbjct: 292 WINQHLIKGK--KEFHCTAKFRYRQKDQGVTVSIMNDGQVKVIFDEQERAITPGQSVVFY 349 Query: 369 TSDSNEARVLGGGII 383 + LGGG+I Sbjct: 350 DGEV----CLGGGVI 360 >gi|124003360|ref|ZP_01688210.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Microscilla marina ATCC 23134] gi|123991458|gb|EAY30889.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Microscilla marina ATCC 23134] Length = 386 Score = 226 bits (575), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 134/386 (34%), Positives = 212/386 (54%), Gaps = 19/386 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDA 76 K RV+VAMSGG+DSS+ A LL GY+V+G+T++ Y S SK++ CC+ + DA Sbjct: 3 KKGRVLVAMSGGIDSSLAAVLLHEQGYEVVGITMKTWDYASSGGSKKETGCCSLDSINDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + + H + D F + VI F + Y G TP PCV CN +K+ LL +L Sbjct: 63 RNIAVDLGFPHLILDIRNEFGDYVIDHFTNEYLDGRTPNPCVLCNTHIKWDALLRRADKL 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 + +ATGHY R G R ++ + +D +DQSY L+ +QQ L PLG + Sbjct: 123 DCEHIATGHYANIREENG-----RYVISKGIDEGKDQSYALWGVSQQSLSRTILPLGQLY 177 Query: 197 KESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252 K +R++A E G +++ +KS+S +ICFV Y +KR + + GD + +G + Sbjct: 178 KSQIREMAIERGFVELVNKSESYEICFVPDNDYRGFLKRRVPELEEKVDGGDFILEDGTV 237 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G+H G YTIGQR+GLG+A+G P++V +DKN++RV++G + LE + + +N L Sbjct: 238 VGKHKGYPFYTIGQRKGLGIALGYPVYVTGIDKNNNRVVLGTVKDLEKNGMI---VNQLT 294 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 + D + K+R + + P +++ +D + V F + +A GQA VFY D Sbjct: 295 LQKYADMKGKPLETVTKVRYNHEGAPARIEQVSDHEIKVWFHEEVSAIAPGQAAVFYEGD 354 Query: 372 SNEARVLGGGIISGSKRSDAVEESLL 397 ++GGG I S + EE ++ Sbjct: 355 D----MIGGGWIKSSFKWQENEEGII 376 >gi|116747617|ref|YP_844304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Syntrophobacter fumaroxidans MPOB] gi|205828997|sp|A0LEL7|MNMA_SYNFM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|116696681|gb|ABK15869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Syntrophobacter fumaroxidans MPOB] Length = 362 Score = 226 bits (575), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 146/373 (39%), Positives = 196/373 (52%), Gaps = 21/373 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + +RV VAMSGGVDS A LLK G DV GV ++ R G CAG + + Sbjct: 3 RSLRVAVAMSGGVDSLRAAILLKEQGNDVFGVHMR----HVPPSRTGRWCAGAMIREKEA 58 Query: 79 -VCDT---INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 +C+ V D + F + VI PF +Y G+TP PC+ CN VKF L+ R Sbjct: 59 FLCELGLRFGFPIAVVDLRDAFESHVIEPFMEAYLLGQTPNPCIFCNPAVKFGFLMEKAR 118 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGA+ ATGHY +R+ RR + R DL +DQSYFL+ +Q QL FPLG Sbjct: 119 ALGAERFATGHY--ARVSPPGPTSRRFRLLRGSDLSKDQSYFLYGLSQDQLASTLFPLGS 176 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIA-LEGDIVHLNGQI 252 +K V A ++G+ +SQ+ICFV GKY + + +R++ A EG I+ L G+ Sbjct: 177 TRKRDVSAWAGQLGIASLFPGESQEICFVPAGKYHEFLTERLDTLHAPAEGPILDLEGRE 236 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 LGRH GI YTIGQRRGLG+A PL+VV L+ ++ V VG L+ R+ + +NW+ Sbjct: 237 LGRHKGIFAYTIGQRRGLGIASSAPLYVVGLEPAANAVRVGRVGDLDRDRLEVGRVNWVS 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 V +C V+IR+ P V + V FE + V GQ+ VFY D Sbjct: 297 IPAPNVPV----RCRVRIRNQHAPAAAVVTPVGERSASVRFEAPQRAVTPGQSAVFYDGD 352 Query: 372 SNEARVLGGGIIS 384 VLGGG IS Sbjct: 353 V----VLGGGTIS 361 >gi|296333160|ref|ZP_06875613.1| tRNA-specific 2-thiouridylase MnmA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675334|ref|YP_003867006.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Bacillus subtilis subsp. spizizenii str. W23] gi|296149358|gb|EFG90254.1| tRNA-specific 2-thiouridylase MnmA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413578|gb|ADM38697.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Bacillus subtilis subsp. spizizenii str. W23] Length = 371 Score = 226 bits (575), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 143/375 (38%), Positives = 204/375 (54%), Gaps = 22/375 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P+D RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVIRVCNQIGIPYYAVNFEKQYYEKVFQYFLDEYKAGRTPNPDVLCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY R V G + R M R +D +DQ+YFL T+ L + FP+G Sbjct: 118 LSLGADYLATGHYAR----VDRSGGKVR-MLRGIDENKDQTYFLNQLTEDTLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR++A+E L A K DS ICF+ + + + + A GD++ ++G++ Sbjct: 173 ELQKSRVREIAKEADLATATKKDSTGICFIGERNFKTFLSQYLP--AQPGDMMTMDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVH-RIYLREIN 309 GRH+G++ YTIGQR GLG+ GEP F V L+KN V G L +I I+ Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W+ + + + C K R Q+ V V+ +G V F++ V GQA VFY Sbjct: 291 WVRSDIMKGQEI---ACTAKFRYRQEDHKVTVRMTGEGEAEVIFDEQVRAVTPGQAVVFY 347 Query: 369 TSDSNEARVLGGGII 383 + LGGG I Sbjct: 348 DGEE----CLGGGTI 358 >gi|15827913|ref|NP_302176.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium leprae TN] gi|221230390|ref|YP_002503806.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium leprae Br4923] gi|3122976|sp|O33099|MNMA_MYCLE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|254811455|sp|B8ZS29|MNMA_MYCLB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|2414533|emb|CAB16422.1| hypothetical protein MLCB637.07 [Mycobacterium leprae] gi|13093466|emb|CAC30660.1| probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium leprae] gi|219933497|emb|CAR71802.1| probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium leprae Br4923] Length = 358 Score = 226 bits (575), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 146/370 (39%), Positives = 199/370 (53%), Gaps = 22/370 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+V+ AMSGGVDSSV AA + G+DV+GV L L ++ + R GS CC+ +DV DARR Sbjct: 1 MKVLAAMSGGVDSSVAAARMVDAGHDVVGVHLAL-STVSGTLRTGSRGCCSKEDVSDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ E+F+ VI F S+YA GETP PCV CN+ +KFS L LG Sbjct: 60 VADVLGIPFYVWDFAEKFQEDVIDNFVSAYARGETPNPCVQCNQRIKFSALSVRALMLGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R G R R R +D +DQSY L T QQL FP+GD K Sbjct: 120 DTVATGHYARL------SGGRLR---RAVDRGKDQSYVLAVLTAQQLRHAAFPIGDTLKR 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR A GL +ADK DS ICF+ G + GI G +V +G +L H+G Sbjct: 171 QVRAEAARRGLLVADKPDSHGICFIPSGNTRAFLSEC-IGIR-RGSVVDADGTVLAEHDG 228 Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 + +T+GQR+GLG+ G P +V +D +++ V VG L VH + R + Sbjct: 229 VHGFTVGQRKGLGIVGPGPNGRPRYVTAIDADTATVYVGDAADLGVHTLIGRAPVFTAGA 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 A + +C V+IR+ + V+ D ++V + GVA GQ V Y D + Sbjct: 289 ----APLGPVQCVVQIRAHGETAVAVVELIGDELFVRLCEPLRGVARGQTLVLYRLDPDG 344 Query: 375 ARVLGGGIIS 384 VLG I+ Sbjct: 345 DEVLGSATIA 354 >gi|229086959|ref|ZP_04219116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Rock3-44] gi|228696335|gb|EEL49163.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Rock3-44] Length = 376 Score = 226 bits (575), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 144/379 (37%), Positives = 206/379 (54%), Gaps = 19/379 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 6 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R Y+ DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVA-YI--DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E+ Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293 Query: 313 DGLFED-AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 G + A GFKC K R Q+ V VQ DD + + ++ + GQA VFY Sbjct: 294 VGWVSNRAKEKGFKCTAKFRYRQEDNKVTVQIVDDNTIRILCDEPIRAITPGQAVVFYDG 353 Query: 371 DSNEARVLGGGIISGSKRS 389 D LGG I RS Sbjct: 354 D----ECLGGATIDEVYRS 368 >gi|70726299|ref|YP_253213.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus haemolyticus JCSC1435] gi|123660380|sp|Q4L6W8|MNMA_STAHJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|68447023|dbj|BAE04607.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Staphylococcus haemolyticus JCSC1435] Length = 370 Score = 226 bits (575), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 143/380 (37%), Positives = 205/380 (53%), Gaps = 42/380 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D D Sbjct: 4 KDIRVVVGMSGGVDSSVTAHVLKDQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIA 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L +LGA Sbjct: 61 VCNQIGIPYYAVNFEQEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R + DDG M R +D +DQ+YFL +QQQL + FP+GD+ K+ Sbjct: 121 DYVATGHYARIRRH--DDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIDKK 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E L A K DS ICF+ + + + + A G++ LNG +G H+G Sbjct: 177 EVRKIAEEQDLATAKKKDSTGICFIGERNFKTFLSQYLP--AQSGEMRTLNGDKMGMHSG 234 Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++ YTIGQR GLG+ G+P FVV ++LE + +Y+ E + D L+ Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLEDNILYV-EQGFHHDALYS 280 Query: 318 DAVV-------------DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363 D ++ +GF+C K R Q VFVQR + + + V F++ + GQ Sbjct: 281 DYLIASDFSFVNPVDLDNGFECTAKFRYRQKDTKVFVQRESQNALRVTFDEPVRAITPGQ 340 Query: 364 ACVFYTSDSNEARVLGGGII 383 A VFY +E LGG I Sbjct: 341 AVVFY----DEEVCLGGATI 356 >gi|116072337|ref|ZP_01469604.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. BL107] gi|116064859|gb|EAU70618.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. BL107] Length = 389 Score = 226 bits (575), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 142/399 (35%), Positives = 210/399 (52%), Gaps = 39/399 (9%) Query: 2 VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61 ++EA L + P + RV V +SGGVDSS+ AALL G++V G+TL L + Sbjct: 6 TMTEAGEAALTRLRQWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMSG---- 61 Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 KG+CCA + + DA +C+ + + H+V D E F+ ++ Y G TPLPC CN Sbjct: 62 --KGACCA-EGLVDAAGICEQLGIPHHVVDTRETFQKEIVQRLVDGYQDGITPLPCSQCN 118 Query: 122 RTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 R+VKF +L +Q +ATGHY R R + GD G+ + + R +D +DQSYFL+ Sbjct: 119 RSVKFGPMLEWAKQERHLPRIATGHYARIR-HGGDRGRHQ--LLRGLDSRKDQSYFLYDL 175 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQG----KYFDVVKRIN 236 Q+ L + FPLG++ K R A GL A+K +SQD+C + D Sbjct: 176 PQEALGRIVFPLGELTKADTRIEAGRHGLRTAEKPESQDLCLADHHGSMRAFLDTYLPPR 235 Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE 296 +G+IV +G ++G H+GI ++TIGQR+GLGVA EPL VV LD +RV+V PR Sbjct: 236 -----QGEIVLKDGTVVGEHDGIEHFTIGQRKGLGVAWQEPLHVVKLDPAMNRVVVAPRA 290 Query: 297 SLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPV-----PVFVQRNDDG---- 347 + INW+ D + V++R PV P+ +D Sbjct: 291 EAGRQEAVVGAINWVSI----DPPLQAMNVDVQVRYRSAPVTARLTPLPATDDDHQRQRP 346 Query: 348 --VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 ++ F++++ +A GQA VFY D+ VLGGG++ Sbjct: 347 HRCHLVFDENQFSIAPGQAAVFYADDT----VLGGGLLQ 381 >gi|289550612|ref|YP_003471516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus lugdunensis HKU09-01] gi|315658107|ref|ZP_07910979.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus lugdunensis M23590] gi|289180144|gb|ADC87389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus lugdunensis HKU09-01] gi|315496436|gb|EFU84759.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus lugdunensis M23590] Length = 370 Score = 225 bits (574), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 145/380 (38%), Positives = 200/380 (52%), Gaps = 42/380 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD+RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 4 KDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIA 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC+ I + +Y ++EE + N V F Y G TP P V CN+ +KF L +LGA Sbjct: 61 VCNQIGIPYYAVNFEEEYWNKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R + Y DDG M R +D +DQ+YFL +QQQL + FP+GD++K+ Sbjct: 121 DYVATGHYARLKRY--DDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKK 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E GL A K DS ICF+ + + + + A GD+ L+G+ +G H+G Sbjct: 177 EVRRIAEEQGLATAKKKDSTGICFIGERNFKSFLSQYLPAQA--GDMRTLDGKKMGVHSG 234 Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++ YTIGQR GLG+ G+P FVV KN V + E + D L+ Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV--GKNL------------VDNVLYVEQGFHHDALYS 280 Query: 318 DAVVD-------------GFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363 D ++ GF C K R Q V V+R DD + V F++ + GQ Sbjct: 281 DYLIASDYSFVNPVDLERGFNCTAKFRYRQQDTEVSVERVDDHSIKVTFKEPVRAITPGQ 340 Query: 364 ACVFYTSDSNEARVLGGGII 383 + VFY + LGG I Sbjct: 341 SVVFYDGEI----CLGGATI 356 >gi|183981704|ref|YP_001849995.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase TrmU [Mycobacterium marinum M] gi|183175030|gb|ACC40140.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase TrmU [Mycobacterium marinum M] Length = 357 Score = 225 bits (574), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 141/373 (37%), Positives = 195/373 (52%), Gaps = 24/373 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84 MSGGVDSSV AA + G+DV+GV L L ++ + R GS CC+ +D DARRV D + Sbjct: 1 MSGGVDSSVAAARMVDAGHDVVGVHLAL-STAPGALRTGSRGCCSKEDASDARRVADVLG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV+D+ ERF+ VI F SSYA GETP PC+ CN+ +KFS L + LG DV+ TG Sbjct: 60 IPFYVWDFAERFKEDVIDDFVSSYARGETPNPCIRCNQRIKFSALYAKALALGFDVVVTG 119 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY R +G+ RR +D ++DQSY L T +QL FP+GD K +R+ A Sbjct: 120 HYARL-----SEGRLRRA----VDQDKDQSYVLAVLTAEQLRHAMFPIGDTPKPQIREEA 170 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHNGIINYT 263 GL +ADK DS DICF+ G + +RI G +V G +L H+G+ +T Sbjct: 171 SRRGLAVADKPDSHDICFIPSGNTQTFLGERIG---VRRGTVVDAAGAVLATHDGVHGFT 227 Query: 264 IGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 IGQR+GLG+ G P +V +D + V VG L+VH + R + A Sbjct: 228 IGQRKGLGIPGPGPDGRPRYVTAIDAETGTVRVGDVADLQVHALTGRAPIFTAG----TA 283 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 +C V++R+ + + D + V GVA GQ V Y D + VLG Sbjct: 284 PTGPLECAVQVRAHGETTSAVAELVGDELSVRLHSPLRGVARGQTLVLYRPDPDGDEVLG 343 Query: 380 GGIISGSKRSDAV 392 I+ + V Sbjct: 344 SATITATSACSPV 356 >gi|23099469|ref|NP_692935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methy ltransferase [Oceanobacillus iheyensis HTE831] gi|30173412|sp|Q8CXC7|MNMA_OCEIH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|22777698|dbj|BAC13970.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Oceanobacillus iheyensis HTE831] Length = 371 Score = 225 bits (574), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 140/380 (36%), Positives = 207/380 (54%), Gaps = 22/380 (5%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 KN KD RVVV MSGGVDSSV A LLK+ GYDV+G+ ++ ++ + G C A +D D Sbjct: 2 KNNKDTRVVVGMSGGVDSSVAALLLKQQGYDVVGIFMKNWDD---TDEFGVCTATEDFDD 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 RVC+ + + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 59 VVRVCNQLEIPYYSVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLDHALA 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD LATGHY + R D R M R D +DQ+YFL ++ L + FPLG + Sbjct: 119 LGADYLATGHYAQVRR----DKNGRVEMLRGNDENKDQTYFLNQLSEDVLDKVMFPLGHL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K VR +A+E L A+K DS ICF+ + + + + A G++ L+G + G Sbjct: 175 PKSEVRKIAKEHELVTAEKKDSTGICFIGERNFKEFLSEYLP--AQPGEMQTLDGIVKGS 232 Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWL 311 H+G++ YT+GQR+GLG+ G+P FVV + + + VG + L + + +INW+ Sbjct: 233 HDGLMYYTLGQRQGLGIGGSGDPWFVVGKNLTDNILYVGQGYENDYLYSNALVATDINWI 292 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370 D + D F C K R Q V V ++++ VYV F++ + + GQA VFY Sbjct: 293 Q----PDKISDTFNCTAKFRYRQQDSEVNVTIKSENEVYVAFKEDQRAITPGQAVVFYDG 348 Query: 371 DSNEARVLGGGIISGSKRSD 390 + LGGG I ++D Sbjct: 349 EV----CLGGGTIDTIIKND 364 >gi|167970222|ref|ZP_02552499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium tuberculosis H37Ra] Length = 367 Score = 225 bits (574), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 148/375 (39%), Positives = 205/375 (54%), Gaps = 26/375 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+V+ AMSGGVDSSV AA + G++V+GV + L+ + + R GS CC+ +D DARR Sbjct: 1 MKVLAAMSGGVDSSVAAARMVDAGHEVVGVHMALWTA-PGTLRTGSRGCCSKEDAADARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ E+F+ VI F SSYA GETP PCV CN+ +KF+ L + LG Sbjct: 60 VADVLGIPFYVWDFAEKFKEDVINDFVSSYARGETPNPCVRCNQQIKFAALSARAVALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R G R R R +D ++DQSY L T QQL FP+GD K Sbjct: 120 DTVATGHYARL------SGGRLR---RAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKR 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVHLNGQILGRH 256 +R A GL +A+K DS DICF+ G K F + +RI G +V +G +L H Sbjct: 171 QIRAEAARRGLAVANKPDSHDICFIPSGNTKAF-LGERIG---VRRGVVVDADGVVLASH 226 Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G+ +TIGQRRGLG+A G P +V +D +++ V VG L+V + R + Sbjct: 227 DGVHGFTIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTA 286 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 G VD C V++R+ + V + D ++V GVA GQ V Y D Sbjct: 287 -GAAPSGPVD---CVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQTLVLYRPDP 342 Query: 373 NEARVLGGGIISGSK 387 VLG I+G+ Sbjct: 343 AGDEVLGSATIAGAS 357 >gi|119357892|ref|YP_912536.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobium phaeobacteroides DSM 266] gi|205813544|sp|A1BI85|MNMA_CHLPD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|119355241|gb|ABL66112.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobium phaeobacteroides DSM 266] Length = 357 Score = 225 bits (574), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 140/371 (37%), Positives = 208/371 (56%), Gaps = 25/371 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAGQDVYDARRVCD 81 VVV +SGGVDS+V A LL + GY V+G+ +++ ++ + S D D + Sbjct: 5 VVVGISGGVDSAVAACLLMKQGYRVLGLNIRILDTPDEHPSLAPSPLLISDHADYQFPVF 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 ++N+S RF VI F + Y AG+TP PC+ CN+ +K+ LL R LGA+ + Sbjct: 65 SLNLS-------ARFSQEVIRYFQADYLAGKTPNPCMVCNKKIKWHGLLEGARLLGAERI 117 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R+ DG+ R + + +D ++DQSYFL+ +Q L FPLG++ KE VR Sbjct: 118 ATGHYART---ASLDGRVR--LYKGLDPQKDQSYFLWMLSQNDLNKTCFPLGELAKEKVR 172 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRHNG 258 +LAR G+ A+K +SQ+ICFV Y ++ G+ + GDIV NG++LG+H G Sbjct: 173 ELARTFGVRAAEKKESQEICFVPHDDYCRYLELAVPGLKEKVAGGDIVDENGKVLGKHRG 232 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 YTIGQRRGLG++ EPL+V LD+ ++ V G + SL+ + + +NW+ + ++ Sbjct: 233 YPFYTIGQRRGLGLSSTEPLYVTALDQENNCVHTGNKSSLDTRSLTVSGLNWINNKSLDE 292 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 V + F KIR P + DG + F ++ VA GQA VFY ++ V Sbjct: 293 PV----EAFGKIRYRDRETPCTIAPLPDGQATITFHTAKHAVAPGQAAVFY----HDEEV 344 Query: 378 LGGGIISGSKR 388 LGGG IS R Sbjct: 345 LGGGFISAVNR 355 >gi|118444647|ref|YP_878354.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium novyi NT] gi|205813888|sp|A0Q152|MNMA_CLONN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|118135103|gb|ABK62147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium novyi NT] Length = 350 Score = 225 bits (574), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 126/365 (34%), Positives = 205/365 (56%), Gaps = 27/365 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V V +SGGVDSSV A LLK GYD+IG+T+++ S+ DA++V D Sbjct: 7 KVAVGLSGGVDSSVAAYLLKEKGYDLIGITMKVSCDLDVSE------------DAKKVAD 54 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + +YV D E F+N VI FA Y G TP PC CN+ +KF L+ ++LGAD + Sbjct: 55 KLGIPYYVIDLTEEFKNKVIDNFAEEYLQGRTPNPCAVCNKHIKFGALIQKAKELGADYI 114 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + G R ++ D ++DQ+Y ++ TQ L + P G+ K+ +R Sbjct: 115 ATGHYARIEEHNG-----RFLVLNAKDDKKDQTYMFYSLTQDVLKHILMPCGEYTKDQIR 169 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGII 260 ++A+++GL++ +K +S DICF+ + +K + ++ G+ V +G+ILG H G+I Sbjct: 170 EIAKKIGLEVHNKKESMDICFIPDNDHGKYIKGLECRDRIKPGNFVDKDGKILGTHKGLI 229 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQR+GLG+++G+P FV+ ++ + V++G E + + +E+N++ D++ Sbjct: 230 YYTIGQRKGLGLSLGKPGFVIDINPERNEVVIGDEEEIFNEGLIAKEVNFIP----FDSL 285 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + + KIR S + DDG + V F+ + + GQ VFY D ++G Sbjct: 286 ENPMEVEAKIRYSTTKSKATIIPYDDGKIKVMFKDKQRAITKGQRVVFYIQD----MLVG 341 Query: 380 GGIIS 384 GG I Sbjct: 342 GGTIE 346 >gi|84498222|ref|ZP_00997019.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Janibacter sp. HTCC2649] gi|84381722|gb|EAP97605.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Janibacter sp. HTCC2649] Length = 374 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 144/383 (37%), Positives = 210/383 (54%), Gaps = 26/383 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS---CCAGQDVYDAR 77 MRVV AMSGGVDS+V AA + G++V+GV L L SR A+ + S CC +D DAR Sbjct: 1 MRVVAAMSGGVDSAVAAARMLDAGHEVVGVHLAL--SRSAATLRESARGCCTIEDAGDAR 58 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV D + + YV+D ERF+ V+ F + Y AG TP PC+ CN ++KF+ LL LG Sbjct: 59 RVADRLGIPFYVWDMAERFQRDVMDDFVAEYQAGRTPNPCLRCNESIKFAALLDRAVALG 118 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D +ATGHY + V +G R + R +D ++DQSY L +QL FPLGD K Sbjct: 119 FDAVATGHYAQIVERVDAEGVTHRELHRAVDPKKDQSYVLGVLDDEQLSRAFFPLGDTAK 178 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHL-NGQILGR 255 +R+ A G IA K DS DICF+ G + K++ G+IV +G+++G Sbjct: 179 PQIREEAAARGFSIAKKPDSYDICFIPDGDTRGFLTKKLG---EQPGEIVDAESGEVVGS 235 Query: 256 HNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 H G +T+GQRRGLG+ EP +VV +D ++RV++G ++ L V I W Sbjct: 236 HEGAYGFTVGQRRGLGLDRSSLDAEPRYVVGVDAPTNRVLIGTQDLLGVDVIVADHARWC 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVASGQACVFY 368 G DA V + ++R+ + VP + + + V+V ++ GVA GQ+ V Y Sbjct: 296 G-----DAPVGEVRVGAQVRAHGEEVPALAWVDESDPELVHVRLDERIRGVAPGQSVVLY 350 Query: 369 TSDSNEARVLGGGIISGSKRSDA 391 ++ RV+G I+ + R+ A Sbjct: 351 ----DDTRVVGSATIAATSRAGA 369 >gi|300871209|ref|YP_003786082.1| tRNA-(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brachyspira pilosicoli 95/1000] gi|300688910|gb|ADK31581.1| tRNA-(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brachyspira pilosicoli 95/1000] Length = 353 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 137/374 (36%), Positives = 207/374 (55%), Gaps = 36/374 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA---GQDVYDARR 78 ++ V MS GVDS+ A LLK G +V GVT+ L++ + + GSC + V + ++ Sbjct: 3 KIAVGMSAGVDSTTTAKLLKEQGNEVFGVTMLLWDGDERAPLAGSCYGPYQNKVVEECKK 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 I + +Y F+ E F+ VI SY G TP PC+ CNR +KF L + G Sbjct: 63 YAAQIGIDYYAFNVSELFQKKVIDYVKDSYKKGLTPNPCIMCNREIKFMALFDAIEKSGL 122 Query: 139 --DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 D ATGHY R D+ ++R I+ R + +DQSYFL+ TQ+QL + FP+ +M Sbjct: 123 TFDKFATGHYAGVRY---DEEEKRYILLRGKNHIKDQSYFLYRLTQEQLSKIMFPMYEMT 179 Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254 KE R LARE L D+A+K+DSQD + + FD LEG+IVH+ +ILG Sbjct: 180 KEETRSLAREYNLIDVAEKNDSQDFFAGEYHRLFDE--------DLEGNIVHIETNEILG 231 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +HNGI +YT+GQR+GLG+A EPLF++ LD +++ V VG + + ++ + +INW+ + Sbjct: 232 KHNGIWHYTVGQRKGLGIAYKEPLFIISLDSSTNTVYVGNKNHTIIDKVTIYDINWIVNK 291 Query: 315 LFEDAVVDGFKCFVKIRSSQ-----DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 ++ F VK RS+ + VP+ +D+ + + F + VA GQ+CV Y Sbjct: 292 REKE-----FTALVKTRSAHKGTMANVVPI----DDNRIDIHFLEPTGIVAKGQSCVCYD 342 Query: 370 SDSNEARVLGGGII 383 + L GGI+ Sbjct: 343 GEI----TLCGGIV 352 >gi|258593690|emb|CBE70031.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [NC10 bacterium 'Dutch sediment'] Length = 357 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 144/359 (40%), Positives = 203/359 (56%), Gaps = 16/359 (4%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDARRVCDTIN 84 MSGGVDS+V AALL GY+V+G++L+L + S+R CC+ +D DAR V + Sbjct: 1 MSGGVDSAVAAALLIEQGYEVVGISLKLLPEGAGNGSERADRCCSVKDAEDARLVAAQLG 60 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + +Y+ +YE +F+ VI F +Y G TP PCV CN +KF LL LGA LATG Sbjct: 61 IPYYILNYESQFQREVIREFTEAYLGGLTPNPCVRCNELIKFGSLLQQALGLGAKRLATG 120 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY R +D + R ++ R +D ERDQSYFL++ TQ+QL + FP+G M K+ VR+ A Sbjct: 121 HYARVER---EDMRGRYLLRRGVDEERDQSYFLYSLTQEQLAGICFPVGHMTKDQVRERA 177 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGIINYT 263 GL IA K+DSQD+CFV G + + G L G I G+ILG+H G+ YT Sbjct: 178 AAYGLRIAAKADSQDLCFV--GHDYRTFLQERCGDRLRPGPITDRTGRILGQHEGVALYT 235 Query: 264 IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDG 323 +GQR GL +A G P +V+ LD ++ V+VG R+ L +N + D + Sbjct: 236 VGQRNGLRLASG-PFYVIRLDPQTNAVVVGRRDELLRREFVAERLNLVA----YDRLTAE 290 Query: 324 FKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 VK+RS Q +P + D + V + +++ A GQA VFY D+ E +L GG Sbjct: 291 RPVLVKVRSRQAAMPATILPLGDSRIRVRWHQAQPAAAPGQAAVFY--DAAEPDLLVGG 347 >gi|152990183|ref|YP_001355905.1| tRNA-specific 2-thiouridylase MnmA [Nitratiruptor sp. SB155-2] gi|205816887|sp|A6Q239|MNMA_NITSB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|151422044|dbj|BAF69548.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Nitratiruptor sp. SB155-2] Length = 339 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 131/365 (35%), Positives = 209/365 (57%), Gaps = 33/365 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++VVAMSGGVDSS A LL+ GY+VIGV ++ + + ++ ++ + ++V Sbjct: 4 KIVVAMSGGVDSSYTANLLQSRGYEVIGVYMKFHPREEYHQK--------NIANIQKVAK 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + ++V D + F+ V PF SY AG TP PC CNR +KF++L+ +LG D + Sbjct: 56 HLGIEYHVLDRTKEFQERVYQPFVDSYVAGLTPNPCAMCNRVMKFTELIEFADELGVDNV 115 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY ++ DG + + D +DQSYFLF ++ L + FPLGD KE+V+ Sbjct: 116 ATGHYAKT------DG---QFIYEATDKSKDQSYFLFNLKKEFLPRIIFPLGDWYKENVK 166 Query: 202 DLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 A ++ L IA++ +S +ICFV+ Y DV+K + + + G++V +G+++G H G Sbjct: 167 KEAMKILLLKSIAEQKESSEICFVETN-YIDVLKE-HTEVEMPGEVVDTHGKVIGEHKGY 224 Query: 260 INYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 ++YTIG+R+G + +P +V+ + + +R++VG +E LE +I LR +N D Sbjct: 225 MHYTIGKRKGFRLFKAHQPHYVLDIIPHKNRIVVGTKEQLEKRQIVLRGLNMFLDQ---- 280 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 F C++KIR VP V+ + V ++ GVA GQA VFY +E +VL Sbjct: 281 ---KEFDCYIKIRYRTHKVPCHVKIDGSVASVTLKEPVYGVAKGQAGVFY----DEEKVL 333 Query: 379 GGGII 383 GGG I Sbjct: 334 GGGWI 338 >gi|298373676|ref|ZP_06983665.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroidetes oral taxon 274 str. F0058] gi|298274728|gb|EFI16280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroidetes oral taxon 274 str. F0058] Length = 361 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 124/368 (33%), Positives = 206/368 (55%), Gaps = 19/368 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQDVYDARRV 79 +V+++MSGG+DS+V A LL R GYD++GVT + ++S + +R+ CC + +ARR+ Sbjct: 6 KVLLSMSGGIDSTVAAILLMRQGYDLVGVTYRTWDSVSQGCFEREKGCCTINAIMEARRM 65 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + H+ D ++FR++VI F Y AG TP PCV CN +K+ +++ + + D Sbjct: 66 AAEMGFPHHFLDIRQKFRDSVIKNFIDEYLAGRTPNPCVVCNAEIKWGEVVKLADSMDCD 125 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R G + + + +D +DQ+YFL+ Q L FPLG++ K Sbjct: 126 YIATGHYARIESLNG-----KYYLKKGVDTNKDQTYFLWRLPQSVLRRTIFPLGELTKPE 180 Query: 200 VRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAG---IALEGDIVHLNGQILGR 255 VR +A + G + ++ K++SQ+ICFV Y + ++ ++ I +G+ V + G ILGR Sbjct: 181 VRQIAFDAGYEKLSKKAESQEICFVPDNDYREFLRAESSAYNEIGTDGNFVDVAGNILGR 240 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H G NYT+GQR+GLG+A+G P+FV + + V++ R+ L + + N++ Sbjct: 241 HKGYPNYTVGQRKGLGIALGRPMFVSQIRPERNEVVLADRDDLYTKTLTATDCNFVD--- 297 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 D + DG + +IR + + V V F+K VA+GQ+ VFY + Sbjct: 298 -RDTIHDGLEVDARIRYKSPATSAKIVLEGNKVRVSFDKEVWAVAAGQSVVFYKDN---- 352 Query: 376 RVLGGGII 383 ++GGG+I Sbjct: 353 LIIGGGVI 360 >gi|228475220|ref|ZP_04059946.1| tRNA-methyltransferase [Staphylococcus hominis SK119] gi|228270831|gb|EEK12233.1| tRNA-methyltransferase [Staphylococcus hominis SK119] Length = 370 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 140/380 (36%), Positives = 206/380 (54%), Gaps = 42/380 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD+RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 4 KDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIA 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L +LGA Sbjct: 61 VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY +R++ +D M R +D +DQ+YFL +Q+QL + FP+GD++K+ Sbjct: 121 DYVATGHY--ARIHRHEDSHVE--MLRGIDNNKDQTYFLNQLSQKQLSKVMFPIGDLEKK 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E L A K DS ICF+ + + + + A G++ LNG+ +G H+G Sbjct: 177 EVRKIAEEQDLATAKKKDSTGICFIGERNFKSFLSQYLP--AQSGEMRTLNGKKMGIHSG 234 Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++ YTIGQR GLG+ G+P FVV ++LE + +Y+ E + D L+ Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLEDNILYV-EQGFHHDALYS 280 Query: 318 DAVV-------------DGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363 D ++ +GF+C K R Q VFVQ+ D+ + V F++ + GQ Sbjct: 281 DYLIASDASFVNPVDLENGFECTAKFRYRQKDTKVFVQKEDEQSIRVTFDEPVRAITPGQ 340 Query: 364 ACVFYTSDSNEARVLGGGII 383 A VFY N LGG I Sbjct: 341 AVVFY----NGEVCLGGATI 356 >gi|324328299|gb|ADY23559.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis serovar finitimus YBT-020] Length = 371 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 142/383 (37%), Positives = 206/383 (53%), Gaps = 27/383 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 118 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 173 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 288 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 + W+ + +A FKC K R Q+ V VQ D+ V++ ++ + GQA V Sbjct: 289 VGWVSN----EAKEKEFKCTAKFRYRQEDNKVTVQIVDENTVHILCDEPIRAITPGQAVV 344 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 FY D LGG I RS Sbjct: 345 FYDGD----ECLGGATIDEVYRS 363 >gi|319441115|ref|ZP_07990271.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium variabile DSM 44702] Length = 364 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 136/367 (37%), Positives = 201/367 (54%), Gaps = 24/367 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84 MSGGVDSSV AA +G++VIGV L L S +A R GS CC+ +D DARRVCD++ Sbjct: 1 MSGGVDSSVAAARALAEGHEVIGVHLALSQSPEAV-RAGSRGCCSLEDSADARRVCDSLG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV+D+ +RF+ VI F SY GETP PC+ CN +KF LL + LG D + TG Sbjct: 60 IPFYVWDFSDRFKADVIDNFVESYEIGETPNPCLRCNEKIKFEALLDRSIALGFDAVVTG 119 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY ++L+ G ++ R +D +DQSY L T +QL FP+GD K ++R A Sbjct: 120 HY--AQLHDG-------VLRRGIDDNKDQSYVLGVLTDEQLAHCMFPVGDTVKPAIRAEA 170 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNGIINYT 263 +++G+ +A K DS DICF+ G+ + I + IV + G+ L H+G+ +T Sbjct: 171 KDLGMGVASKPDSHDICFIPDGR---TQAFLGTKIGMRPGIVQSVEGETLAEHDGVYGFT 227 Query: 264 IGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 IGQR+GLG+ A G+P +V ++ ++ V VG + L + I + L + Sbjct: 228 IGQRKGLGLPGPAADGQPRYVTDINASTGTVTVGRKRDLRIGHITADRLKRLDPAKHGET 287 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 +C V++R+ VP D V ++ + GVA GQA V Y D+ ++G Sbjct: 288 ----LECEVQVRAHGGVVPATATLTSDAVELELHEPLQGVARGQAAVVYLPDAEGDILIG 343 Query: 380 GGIISGS 386 G IS + Sbjct: 344 SGTISAT 350 >gi|33240814|ref|NP_875756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|81664194|sp|Q7VAT9|MNMA_PROMA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|33238343|gb|AAQ00409.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 406 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 139/389 (35%), Positives = 209/389 (53%), Gaps = 40/389 (10%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D + V +SGGVDSS+ AALL G++V G+TL L + KGSCC + DA + Sbjct: 36 DHSIAVGLSGGVDSSLTAALLVEAGWNVEGITLWLMSG------KGSCCT-DGLVDAAGI 88 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGA 138 C+ + + H+V D E F+ +I Y G TP PC CNR VKFS +L Q LG Sbjct: 89 CEQLGIPHHVIDARETFQREIIESLVKGYQEGMTPSPCSKCNRFVKFSPILEWAEQNLGL 148 Query: 139 DVLATGHYIRSRLY--------VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 +ATGHY R + ++ RR + R +D +DQSYFL+ +Q+ L + F Sbjct: 149 KRIATGHYARIKHLQEPIKISSAKENQIRRHQLLRGLDQNKDQSYFLYDLSQEILEKVIF 208 Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLN 249 PLG++KK R A + L A+K +SQD+C + + + ++ I+ G+I+ N Sbjct: 209 PLGELKKADTRKEASRIELRTAEKPESQDLCLAEH--HGSMKAFLDEYISPRNGEILLSN 266 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 GQ+LG+H+GI ++TIGQR+GLG+A EPL V+ + +++RVIV PR + IN Sbjct: 267 GQLLGQHDGIEHFTIGQRKGLGIAWKEPLHVIEIQSSTNRVIVAPRSEASRDNCTVGSIN 326 Query: 310 WLG-DGLFEDAVVDGFKCFVKIRSSQDPV-----PVFVQRND---DGVY---VDFEKSEV 357 W+ + + +V+ V++R PV P+ + D D Y + F+ + Sbjct: 327 WVSIEPPSKKTIVE-----VQLRYRSKPVLATLTPIKPLKKDIENDRPYRCNLQFQSEQF 381 Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGS 386 + GQA VFY + +LGGGII G+ Sbjct: 382 SITPGQAAVFYEGEI----LLGGGIIEGN 406 >gi|228993134|ref|ZP_04153056.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus pseudomycoides DSM 12442] gi|228999183|ref|ZP_04158765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus mycoides Rock3-17] gi|229006731|ref|ZP_04164365.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus mycoides Rock1-4] gi|228754592|gb|EEM04003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus mycoides Rock1-4] gi|228760800|gb|EEM09764.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus mycoides Rock3-17] gi|228766593|gb|EEM15234.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus pseudomycoides DSM 12442] Length = 376 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 145/383 (37%), Positives = 206/383 (53%), Gaps = 27/383 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 6 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R Y+ DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARV-AYI--DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 178 ELKKPQIREMAKEAGLATATKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 I W+ + E FKC K R Q+ V VQ DD V + ++ + GQA V Sbjct: 294 IGWVSNRAKEKE----FKCTAKFRYRQEDNKVTVQIVDDNTVRILCDEPIRAITPGQAVV 349 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 FY D LGG I RS Sbjct: 350 FYDGD----ECLGGATIDEVYRS 368 >gi|318042099|ref|ZP_07974055.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. CB0101] Length = 394 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 150/410 (36%), Positives = 209/410 (50%), Gaps = 66/410 (16%) Query: 6 ATRLNSLDLDK---NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62 AT +L L++ P + RV V +SGGVDSS+ AALL G+ V G+TL L + Sbjct: 17 ATPAGALALERLQAWPGEHRVAVGLSGGVDSSLTAALLVEAGWQVEGLTLWLMSG----- 71 Query: 63 RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122 KG+CCA + + DA +C+ + V H+V D+ E F+ ++ Y G TPLPC CNR Sbjct: 72 -KGACCA-EGLVDAAGICEQLGVEHHVVDFREHFKEQIVDFLVQGYGDGITPLPCSRCNR 129 Query: 123 TVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181 VKF +L ++ G +ATGHY R D R +++ R +D ++DQSYFL+ Sbjct: 130 EVKFGPMLHWAQEERGISRIATGHYARVCHGEQSDNGRHQLL-RGLDRQKDQSYFLYDLP 188 Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQG----KYFDVVKRINA 237 Q+ L L FPLG++ K R A GL A+K +SQD+C + D Sbjct: 189 QEALGRLVFPLGELTKADTRVEAARHGLRTAEKPESQDLCLADHHGSMRAFLDTYLPPR- 247 Query: 238 GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES 297 +G+IV +GQ++G+H+GI ++TIGQR+GLGVA EPL VV LD +RV+V PR Sbjct: 248 ----QGEIVLEDGQVVGQHDGIQHFTIGQRKGLGVAWSEPLHVVRLDGVMNRVVVAPRR- 302 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVY------- 349 D DAVV G +V I Q+P+ V VQ R G Sbjct: 303 ---------------DAARSDAVV-GAVNWVSIAPPQEPIEVEVQVRYRSGAVAARLSPL 346 Query: 350 ----------------VDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 ++F + + + GQA VFY D RVLGGG+I Sbjct: 347 DATDADAAAGRPHRCRLEFAEEQFSITPGQAAVFYAGD----RVLGGGLI 392 >gi|78779771|ref|YP_397883.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus str. MIT 9312] gi|123768944|sp|Q319J8|MNMA_PROM9 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|78713270|gb|ABB50447.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus str. MIT 9312] Length = 385 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 210/377 (55%), Gaps = 32/377 (8%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++V +SGGVDSS+ AALL G+DV G+TL L K +GSCC+ + + DA +C+ Sbjct: 26 IIVGLSGGVDSSLSAALLVESGWDVEGLTLWLM------KGQGSCCS-EGLVDAAGLCED 78 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVL 141 + ++H + D E F VI Y G TPLPC CN+ VKF ++L+ + + Sbjct: 79 LGINHKIIDSREIFEREVIKKTTEGYEKGFTPLPCSMCNKNVKFEEMLNYAINKKDFTHI 138 Query: 142 ATGHYIR---SRLYVGDDGK----RRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 ATGHY R S D K + ++ R D +DQSYFL++ +Q+ L L FPLG+ Sbjct: 139 ATGHYARIKKSSYAETLDYKSFVFKDFLLLRGTDENKDQSYFLYSLSQEVLSRLVFPLGE 198 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQIL 253 MKKE R A +GL A K +SQD+C V+ Y + + I+ I EG+I+H+NG++L Sbjct: 199 MKKEETRKEALRLGLRTAQKPESQDLCLVEH--YGSMQRFIDKHIEPKEGEIIHVNGKVL 256 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G HNGI ++TIGQR+GLG+A EPL+V LD+ + V V + L + ++NW+ Sbjct: 257 GTHNGIHHFTIGQRKGLGIAWPEPLYVKSLDRVKNIVYVADKSDLFNREAIISKVNWVS- 315 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPV--PVFVQRNDDG----VYVDFEKSEVGVASGQACVF 367 E+ + + +IR PV + +N D + FE+S+ V GQA VF Sbjct: 316 --IEEPKQE-IEVEAQIRYRSHPVKGTLIPMKNSDNPANTFKLIFEESQSSVTPGQAAVF 372 Query: 368 YTSDSNEARVLGGGIIS 384 Y + +LGGG+I+ Sbjct: 373 YKGEI----LLGGGLIN 385 >gi|157413852|ref|YP_001484718.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str. MIT 9215] gi|205816917|sp|A8G6A1|MNMA_PROM2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|157388427|gb|ABV51132.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus str. MIT 9215] Length = 385 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 138/375 (36%), Positives = 211/375 (56%), Gaps = 28/375 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++V +SGGVDSS+ AALL G++V G+TL L K +GSCC+ + + DA +C+ Sbjct: 26 IIVGLSGGVDSSLSAALLVEKGWNVEGLTLWLM------KGQGSCCS-EGLVDAAGLCED 78 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVL 141 + ++H + D E F VI SY G TPLPC CN+ VKF ++L+ + + Sbjct: 79 LGINHKIIDSREIFEKEVIKKTTESYEKGLTPLPCSMCNKNVKFEEMLNYAINKKDFTHI 138 Query: 142 ATGHY--IRSRLYVGD-DGK----RRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 ATGHY I+ YV D K + ++ R D +DQSYFL++ +Q+ L L FPLG+ Sbjct: 139 ATGHYARIKKSSYVEKLDCKSFVFKEFLLLRGADENKDQSYFLYSLSQEVLSRLEFPLGE 198 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQIL 253 MKKE R A +GL A K +SQD+C V+ Y + + I+ I EG+I+H+NG++L Sbjct: 199 MKKEETRKEALRLGLRTAQKPESQDLCLVEH--YGSMQRFIDKHIEPKEGEIMHVNGKVL 256 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G HNGI ++T+GQR+GLG+A +PL+V LD+ + V V + L + ++NW+ Sbjct: 257 GTHNGIQHFTVGQRKGLGIAWPKPLYVKSLDRGKNIVYVADKSDLFNKEAIISKVNWV-- 314 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD----FEKSEVGVASGQACVFYT 369 + E + ++ RS + +N D + FE+++ + GQA VFY Sbjct: 315 SIVEPKQEIEVEAQIRYRSHPVKGTLIPLKNLDNPTKNFKLIFEENQSSITPGQAAVFYK 374 Query: 370 SDSNEARVLGGGIIS 384 D +LGGG+I+ Sbjct: 375 GDI----LLGGGLIN 385 >gi|110596963|ref|ZP_01385253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobium ferrooxidans DSM 13031] gi|110341650|gb|EAT60110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobium ferrooxidans DSM 13031] Length = 361 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 140/368 (38%), Positives = 204/368 (55%), Gaps = 25/368 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRVC 80 +VVV +SGGVDS+ A LLK+ GY V G+ +++ +S + S + S D D + Sbjct: 6 KVVVGISGGVDSATTACLLKKAGYAVTGLNIRVLDSLEDSPSLQPSPLVISDHPDFQIPV 65 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 T+N+S +FR+ VI F + Y G TP PC+ CN+ +K+ L + L AD Sbjct: 66 LTLNLSR-------KFRDDVITYFHNDYLGGHTPNPCMVCNKKIKWFGLFEGLKLLEADF 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGH+ + DG+ R + + +D E+DQSYFL+ +Q L PLG+M K V Sbjct: 119 IATGHFASTSF---SDGRYR--LYKGVDPEKDQSYFLWMLSQSDLAKTLLPLGEMVKPEV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRHN 257 R LARE G+ A+K +SQ+ICFV Q Y ++ G+A + G+IV G ++G+H Sbjct: 174 RRLAREFGVRAAEKKESQEICFVPQDDYCSYLEGAIPGLAEKVSGGEIVDEAGTVIGKHR 233 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 G YTIGQRRGLGVA PL+V +D +R+ VG + +LE ++ +NW+G Sbjct: 234 GYPFYTIGQRRGLGVAAKVPLYVTEIDPEHNRIHVGQKSALETRKLVASGLNWIGI---- 289 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 D V KIR P ++ D+ V V F+ + GV++GQA VFY E+ Sbjct: 290 DGVNAPVTALGKIRYRDKETPCTIEPLADNEVAVAFDAPKSGVSTGQAAVFY----RESE 345 Query: 377 VLGGGIIS 384 VLGGG I+ Sbjct: 346 VLGGGFIT 353 >gi|227501721|ref|ZP_03931770.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium accolens ATCC 49725] gi|227077746|gb|EEI15709.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium accolens ATCC 49725] Length = 355 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 142/367 (38%), Positives = 194/367 (52%), Gaps = 26/367 (7%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVCDTINV 85 MSGGVDSSV AA G+DV+GV L L+ + ++ K CC+ +D DARR+CD + + Sbjct: 1 MSGGVDSSVAAARAVEAGHDVVGVHLALHKDAQQTREKARGCCSLEDSADARRICDKLGI 60 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145 YV+D+ E F+ VI F SY+ GETP PC+ CN +KF LL LG D +ATGH Sbjct: 61 PFYVWDFSEEFKEEVITDFVDSYSRGETPNPCLRCNEKIKFRALLQKGMALGFDAVATGH 120 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y + DDG R R D +DQSY L + ++L FP+GD K +R+ A Sbjct: 121 YAT----LDDDGYMR----RSKDENKDQSYVLGVISAEELDHCFFPIGDTPKPQIREEAA 172 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNGIINYTI 264 G A K DS DICF+ G + + + + I L G IV G L H+G NYTI Sbjct: 173 AHGFSTAKKPDSYDICFIPDG---NTQQFLGSRIGLRPGMIVDQEGTELKEHDGAWNYTI 229 Query: 265 GQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 GQR+GL + A G P +V +D + V VG RE L V I + +L G+ D Sbjct: 230 GQRKGLDIKAPAADGRPRYVTDIDAATGTVTVGAREDLAVTAIRADRLKYLHPGMDGD-- 287 Query: 321 VDGFKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR-- 376 F+C V++R+ VP V R D + ++ ++ GVA GQA V Y ++ Sbjct: 288 ---FECEVQVRAHGSVVPCIAHVDRAADSMRLELKEPLSGVARGQAAVLYLPSPDDLGDI 344 Query: 377 VLGGGII 383 V+G G I Sbjct: 345 VIGSGTI 351 >gi|228917030|ref|ZP_04080590.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842637|gb|EEM87725.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 376 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 143/383 (37%), Positives = 205/383 (53%), Gaps = 27/383 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 6 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 + W+ + +A FKC K R QD V VQ D+ V + ++ + GQA V Sbjct: 294 VGWVSN----EAKEKEFKCTAKFRYRQDDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 349 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 FY D LGG I RS Sbjct: 350 FYDGD----ECLGGATIDEVYRS 368 >gi|299535696|ref|ZP_07049017.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lysinibacillus fusiformis ZC1] gi|298728896|gb|EFI69450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lysinibacillus fusiformis ZC1] Length = 374 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 135/371 (36%), Positives = 205/371 (55%), Gaps = 18/371 (4%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 ++P +RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ ++ + G C A +D D Sbjct: 5 RDPSQIRVVVGMSGGVDSSVAAYLLKQQGYEVIGIFMKNWDD---TDENGVCTATEDYDD 61 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 +VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 62 VIKVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHAMN 121 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD LATGHY +R+ DG+ R M R +D +DQ+YFL +Q+QL + FP+GD+ Sbjct: 122 LGADYLATGHY--ARIDRNGDGEVR--MLRGVDDNKDQTYFLNQLSQEQLAHVMFPIGDI 177 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K+ VR +A E GL A K DS ICF+ + + + + + A G + ++G ++G+ Sbjct: 178 EKKEVRKIAEEAGLATAKKKDSTGICFIGERNFKEFLSQYLP--AQPGKMETMDGVVMGQ 235 Query: 256 HNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H+G++ YT+GQR GLG+ GEP FV+ D + ++VG + + Y + + Sbjct: 236 HDGLMYYTLGQRHGLGIGGDGEPWFVLGKDLARNVLLVG--QGFDNEYSYSTSLTAVKMN 293 Query: 315 LFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 + G F C K R Q PV V+ DG ++ F + + GQA V Y Sbjct: 294 YTSTKKLPGKFSCTAKFRYRQTDTPVEVEILPDGRAHITFAEPVRAITPGQAVVLY---- 349 Query: 373 NEARVLGGGII 383 N +GGG I Sbjct: 350 NGEECMGGGTI 360 >gi|15610161|ref|NP_217540.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis H37Rv] gi|15842587|ref|NP_337624.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis CDC1551] gi|31794202|ref|NP_856695.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium bovis AF2122/97] gi|121638907|ref|YP_979131.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662876|ref|YP_001284399.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis H37Ra] gi|148824215|ref|YP_001288969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium tuberculosis F11] gi|215405014|ref|ZP_03417195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium tuberculosis 02_1987] gi|215428470|ref|ZP_03426389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium tuberculosis T92] gi|215447296|ref|ZP_03434048.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium tuberculosis T85] gi|224991399|ref|YP_002646088.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|253797879|ref|YP_003030880.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis KZN 1435] gi|254233657|ref|ZP_04926982.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis C] gi|254365655|ref|ZP_04981700.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis str. Haarlem] gi|254552097|ref|ZP_05142544.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188054|ref|ZP_05765528.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis CPHL_A] gi|260202161|ref|ZP_05769652.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis T46] gi|289444586|ref|ZP_06434330.1| tRNA methyl transferase [Mycobacterium tuberculosis T46] gi|289448700|ref|ZP_06438444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis CPHL_A] gi|289553185|ref|ZP_06442395.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis KZN 605] gi|289746832|ref|ZP_06506210.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase trmU [Mycobacterium tuberculosis 02_1987] gi|289751695|ref|ZP_06511073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis T92] gi|289759148|ref|ZP_06518526.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU [Mycobacterium tuberculosis T85] gi|294993474|ref|ZP_06799165.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis 210] gi|297635653|ref|ZP_06953433.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis KZN 4207] gi|297732651|ref|ZP_06961769.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis KZN R506] gi|306777328|ref|ZP_07415665.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu001] gi|306781232|ref|ZP_07419569.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu002] gi|306785873|ref|ZP_07424195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu003] gi|306790227|ref|ZP_07428549.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu004] gi|306794722|ref|ZP_07433024.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu005] gi|306798964|ref|ZP_07437266.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu006] gi|306969100|ref|ZP_07481761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu009] gi|306973444|ref|ZP_07486105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu010] gi|307081154|ref|ZP_07490324.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu011] gi|307085756|ref|ZP_07494869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu012] gi|313659983|ref|ZP_07816863.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis KZN V2475] gi|54039755|sp|P66977|MNMA_MYCBO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|54042259|sp|P66976|MNMA_MYCTU RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|166234858|sp|A1KN20|MNMA_MYCBP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|166235068|sp|A5U737|MNMA_MYCTA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|254811454|sp|C1AGE1|MNMA_MYCBT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|2791622|emb|CAA16109.1| PROBABLE tRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE TRMU [Mycobacterium tuberculosis H37Rv] gi|13882900|gb|AAK47438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium tuberculosis CDC1551] gi|31619797|emb|CAD96737.1| PROBABLE tRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE TRMU [Mycobacterium bovis AF2122/97] gi|121494555|emb|CAL73036.1| Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124599186|gb|EAY58290.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis C] gi|134151168|gb|EBA43213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis str. Haarlem] gi|148507028|gb|ABQ74837.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU [Mycobacterium tuberculosis H37Ra] gi|148722742|gb|ABR07367.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase trmU [Mycobacterium tuberculosis F11] gi|224774514|dbj|BAH27320.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|253319382|gb|ACT23985.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis KZN 1435] gi|289417505|gb|EFD14745.1| tRNA methyl transferase [Mycobacterium tuberculosis T46] gi|289421658|gb|EFD18859.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis CPHL_A] gi|289437817|gb|EFD20310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis KZN 605] gi|289687360|gb|EFD54848.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase trmU [Mycobacterium tuberculosis 02_1987] gi|289692282|gb|EFD59711.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis T92] gi|289714712|gb|EFD78724.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU [Mycobacterium tuberculosis T85] gi|308214222|gb|EFO73621.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu001] gi|308325877|gb|EFP14728.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu002] gi|308329399|gb|EFP18250.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu003] gi|308333244|gb|EFP22095.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu004] gi|308336898|gb|EFP25749.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu005] gi|308340714|gb|EFP29565.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu006] gi|308353256|gb|EFP42107.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu009] gi|308357089|gb|EFP45940.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu010] gi|308361042|gb|EFP49893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu011] gi|308364679|gb|EFP53530.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu012] gi|323718255|gb|EGB27433.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis CDC1551A] gi|326902753|gb|EGE49686.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis W-148] gi|328457656|gb|AEB03079.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis KZN 4207] Length = 367 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 148/375 (39%), Positives = 205/375 (54%), Gaps = 26/375 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+V+ AMSGGVDSSV AA + G++V+GV + L ++ + R GS CC+ +D DARR Sbjct: 1 MKVLAAMSGGVDSSVAAARMVDAGHEVVGVHMAL-STAPGTLRTGSRGCCSKEDAADARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ E+F+ VI F SSYA GETP PCV CN+ +KF+ L + LG Sbjct: 60 VADVLGIPFYVWDFAEKFKEDVINDFVSSYARGETPNPCVRCNQQIKFAALSARAVALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R G R R R +D ++DQSY L T QQL FP+GD K Sbjct: 120 DTVATGHYARL------SGGRLR---RAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKR 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVHLNGQILGRH 256 +R A GL +A+K DS DICF+ G K F + +RI G +V +G +L H Sbjct: 171 QIRAEAARRGLAVANKPDSHDICFIPSGNTKAF-LGERIG---VRRGVVVDADGVVLASH 226 Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G+ +TIGQRRGLG+A G P +V +D +++ V VG L+V + R + Sbjct: 227 DGVHGFTIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTA 286 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 G VD C V++R+ + V + D ++V GVA GQ V Y D Sbjct: 287 -GAAPSGPVD---CVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQTLVLYRPDP 342 Query: 373 NEARVLGGGIISGSK 387 VLG I+G+ Sbjct: 343 AGDEVLGSATIAGAS 357 >gi|189485341|ref|YP_001956282.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|205828982|sp|B1GZY9|MNMA_UNCTG RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|170287300|dbj|BAG13821.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 360 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 132/375 (35%), Positives = 208/375 (55%), Gaps = 30/375 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRK-GSCCAG---QDVY 74 +M++++ +SGGVDS+V A LLK+ GY+V G T+ ++ N A K K C G +++ Sbjct: 4 EMKILIGLSGGVDSAVAAYLLKKQGYEVTGTTMSIWDNFLPAPKTKVNDSCLGPENENIE 63 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 A ++ D + + YV D ++ V+ F + Y G TP PC+ CN +KF L + + Sbjct: 64 TAHKIADFLTIPLYVTDCSGEYKKVVLENFRNEYKEGRTPNPCIRCNAYIKFGILPAAVK 123 Query: 135 QLGA--DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + G D ATGHY D + + DL +DQ+YFL+ TQ+ L + FPL Sbjct: 124 KTGLSFDKFATGHYANIGF---DSSTNMYKLYKAADLNKDQTYFLYRLTQKTLSETIFPL 180 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDI-CFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 G KE VR++A+++GL A+K DSQD C G Y D+++ A G+IV NG+ Sbjct: 181 GIYTKEQVRNIAKKIGLPSAEKPDSQDFYC----GDYNDILQF----PANPGNIVDKNGR 232 Query: 252 ILGRHNGIINYTIGQRRGLGVAMG--EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 +LG+HNGI NYTIG+R+GLG+ G +PL+V+ + + V +G +E L + ++++ Sbjct: 233 VLGKHNGIWNYTIGKRKGLGLLGGTKDPLYVINISAKQNMVTIGTKEDLYSSSLTAKKVS 292 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFY 368 W + + + KIR P F + + D V V+F + ++ V +GQ+ VFY Sbjct: 293 WCSILPPKKTI----EATAKIRRQHKPEKAFIIPQEDSSVKVEFAQPQMSVTAGQSIVFY 348 Query: 369 TSDSNEARVLGGGII 383 D+ VLGGG+I Sbjct: 349 KDDT----VLGGGVI 359 >gi|302865761|ref|YP_003834398.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Micromonospora aurantiaca ATCC 27029] gi|315502317|ref|YP_004081204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Micromonospora sp. L5] gi|302568620|gb|ADL44822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Micromonospora aurantiaca ATCC 27029] gi|315408936|gb|ADU07053.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Micromonospora sp. L5] Length = 358 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 146/374 (39%), Positives = 202/374 (54%), Gaps = 24/374 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV GV L L + + + R G+ CC +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVEAGHDVTGVHLALARNPQ-TYRTGARGCCTLEDSRDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D +RF + V+ F + YAAG TP PC+ CN +KF+ +L LG Sbjct: 60 AADVLGIPFYVWDMADRFHDDVVDDFVAEYAAGRTPNPCLRCNEKIKFAAVLDRAVALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGH+ R +G DG ++ R +D +DQSY L T+ QL FPLGD K Sbjct: 120 DAVVTGHHAR----LGADG----LLRRSVDAAKDQSYVLAVLTRAQLDRSIFPLGDSTKA 171 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIV-HLNGQILGRH 256 VR A GL +ADK DS DICF+ G + +R+ G +V L G ++G H Sbjct: 172 EVRAEAARRGLAVADKPDSHDICFIADGDTRGFLAERLGEA---PGQVVDALTGAVVGSH 228 Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G YT+GQRRGL + G P +V+ + ++ V VGP E+LEV + W G Sbjct: 229 SGAYQYTVGQRRGLHLDRPAPDGRPRYVLSITPTTNTVTVGPAEALEVSDVRATRPVWTG 288 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 G D V+ C V++R+ D VP V+ + DG+ + GVA+GQA V Y D Sbjct: 289 -GPRPDGPVE---CEVQLRAHGDVVPAAVEVDADGLRASLRRPVRGVAAGQAIVAYRPDP 344 Query: 373 NEARVLGGGIISGS 386 VLG I+ + Sbjct: 345 AGDVVLGSATITAA 358 >gi|229814917|ref|ZP_04445255.1| hypothetical protein COLINT_01960 [Collinsella intestinalis DSM 13280] gi|229809404|gb|EEP45168.1| hypothetical protein COLINT_01960 [Collinsella intestinalis DSM 13280] Length = 409 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 149/408 (36%), Positives = 199/408 (48%), Gaps = 54/408 (13%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+VAMSGGVDSSV A LL + GYD +G T+ L+ G+C +G D DA +C Sbjct: 5 RVLVAMSGGVDSSVTAYLLTQQGYDCLGATMLLHGDAA----PGACGSGSDADDAAAICA 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + H V D E F V+ F +Y G TP PC+DCNR +KF LLS R+ D + Sbjct: 61 RLGFPHEVIDMRETFERHVVEKFVRTYETGRTPNPCIDCNRHLKFDALLSYAREHDCDFI 120 Query: 142 ATGHYIR-SRLYVGDDGKRRR---------IMCR------------PMDLERDQSYFLFA 179 ATGHY R L G G RR I R +D +DQSY L++ Sbjct: 121 ATGHYGRIGTLAEGGGGSVRRGEEQEFVARITARTGASNAVHTLSCALDPSKDQSYVLYS 180 Query: 180 TTQQQLCDLRFPLGDMKKE-SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG 238 TQ++L PLG + KE VR +ARE G + A K DSQ ICFV + +++ N Sbjct: 181 LTQERLARTLLPLGGLFKERDVRRIAREQGFENAGKRDSQGICFVPDNDFATYIEKRNGA 240 Query: 239 IALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL 298 EGDIV+ +G +LGRH+G I YT+GQR+GLGVA P++V +D ++ V +G L Sbjct: 241 PLPEGDIVNTSGHVLGRHHGAIRYTVGQRKGLGVACAHPVYVTGIDAVANTVTLGEVADL 300 Query: 299 EVHRIYLREINWLGDG-----LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY---- 349 + + W L ++A G KIR P ++R G Sbjct: 301 MASGLVADDWIWSAPANVMEELLDEAGETGLPVSAKIRYRHPAQPARLRRATCGTTGSSA 360 Query: 350 --------------VDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 + F+ E G+A GQA V Y D VLGGG + Sbjct: 361 GANAIAENAANAFELIFDSPERGIAPGQAVVAYAGDI----VLGGGTV 404 >gi|189502542|ref|YP_001958259.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Amoebophilus asiaticus 5a2] gi|229470222|sp|B3ETH8|MNMA_AMOA5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|189497983|gb|ACE06530.1| hypothetical protein Aasi_1200 [Candidatus Amoebophilus asiaticus 5a2] Length = 376 Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 132/386 (34%), Positives = 206/386 (53%), Gaps = 18/386 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76 K RV+VAMSGG+DSS+ A LL GY+++G+T++ ++ S K++ CC+ + DA Sbjct: 2 KKGRVLVAMSGGIDSSITALLLHEQGYEIVGLTMKTWDYVSSGGRKKETGCCSLDSINDA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R V ++ H + D E F + VI F S Y AG TP PCV CN +K+ LL +L Sbjct: 62 RNVAVSLGFPHIILDIREEFGDYVISNFTSEYLAGRTPNPCVLCNTHIKWDALLRRADKL 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 + +ATGHY R G R I+ R DL +DQSY L+ +Q+ L PLG Sbjct: 122 NCEYIATGHYANIRHENG-----RYIVSRGKDLNKDQSYALWGVSQESLSRTLLPLGVFT 176 Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252 K +R++A + G ++ KS+S +ICF+ Y +KR + + G+ V +G + Sbjct: 177 KPEIREIASQRGFKELVTKSESYEICFIPDNDYRGFLKRRVDNLEEQVKGGEFVLEDGTV 236 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G H G YT+GQR+GLG+ +G P++V + + +RV++G + L +Y+ ++N Sbjct: 237 VGHHEGYPFYTVGQRKGLGITLGYPVYVTEIQADKNRVVLGTFDELARDGMYVHKLNM-- 294 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 G + D K+R + P ++++ D + V F K +A GQA VFY D Sbjct: 295 -GKYPDLQGRRLDSVTKVRYNDPGSPAVLEQDGDIMKVFFGKGVHAIAPGQAAVFYEGDD 353 Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398 V+GGG I S + A ++ S Sbjct: 354 ----VIGGGWIKASFKQPAFKKYNFS 375 >gi|157736745|ref|YP_001489428.1| tRNA-specific 2-thiouridylase MnmA [Arcobacter butzleri RM4018] gi|205810156|sp|A8ES35|MNMA1_ARCB4 RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 gi|157698599|gb|ABV66759.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arcobacter butzleri RM4018] Length = 345 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 135/370 (36%), Positives = 197/370 (53%), Gaps = 33/370 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGG+DSSV A +L+ +GY+V G+ L+L+N K ++ V Sbjct: 5 KVMVGMSGGIDSSVTAYMLQNEGYEVEGIYLKLHNRTDGYHEK-------NLGYIEDVAK 57 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +N+ +Y+ D ++F V F SY G TP PCV CNR +KF +L +Q GA L Sbjct: 58 FLNIKYYILDLADKFSKEVYDYFVDSYLTGTTPNPCVKCNRQIKFGAMLDFAKQHGASYL 117 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY ++ DGK D +DQSYFL + L + FPL KKE + Sbjct: 118 ATGHYAKT------DGK---FFYEADDKTKDQSYFLSQVDKDALKYMMFPLSTYKKEDIV 168 Query: 202 DLAREMGL---DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 ++ + I +KS+SQ+ICFV+ Y DVVK+ +A I EGD++ NG+++G+H G Sbjct: 169 KFGAKLDVAYKKITEKSESQEICFVET-VYTDVVKK-HANIDQEGDVLDENGKVVGKHKG 226 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 +YTIG+RRG V EP FV L+ + ++VG +E+LEV+ + +N D Sbjct: 227 FAHYTIGKRRGFTVKGAQEPHFVTKLNPKDNTIVVGKKEALEVNEVVGNNLNMFIDDT-- 284 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 F C VK+R P VQ D+ Y+ ++ GVA GQ VFY +E +V Sbjct: 285 -----KFSCNVKLRYRSVSTPCEVQIKDEKAYITLKEPVYGVAKGQLAVFY----HEEKV 335 Query: 378 LGGGIISGSK 387 +G I +K Sbjct: 336 IGSAWIESTK 345 >gi|52081229|ref|YP_080020.1| tRNA-specific 2-thiouridylase MnmA [Bacillus licheniformis ATCC 14580] gi|52786609|ref|YP_092438.1| tRNA-specific 2-thiouridylase MnmA [Bacillus licheniformis ATCC 14580] gi|319644804|ref|ZP_07999037.1| tRNA-specific 2-thiouridylase mnmA [Bacillus sp. BT1B_CT2] gi|73919897|sp|Q65GR9|MNMA_BACLD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|52004440|gb|AAU24382.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Bacillus licheniformis ATCC 14580] gi|52349111|gb|AAU41745.1| TrmU [Bacillus licheniformis ATCC 14580] gi|317392613|gb|EFV73407.1| tRNA-specific 2-thiouridylase mnmA [Bacillus sp. BT1B_CT2] Length = 372 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 144/375 (38%), Positives = 200/375 (53%), Gaps = 21/375 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K P+D RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MAKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D +VC+ I + +Y ++E+++ V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVIKVCNQIGIPYYAVNFEKQYWEKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY R D R M R +D +DQ+YFL T++QL + FP+G Sbjct: 118 LSLGADYLATGHYARV-----DRTDGRVKMLRGLDENKDQTYFLNQLTEEQLSKVLFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR++A+E GL A K DS ICF+ + + + + A GD+ + G+ Sbjct: 173 QLQKSRVREIAKEAGLATAAKKDSTGICFIGERNFKTFLSQYLP--AQPGDMRTMEGEFK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVH-RIYLREIN 309 GRH+G++ YTIGQR GLG+ GEP FVV L+KN V G L +I ++ Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFVVGKDLEKNILYVDQGFDNPLLFSDKITATNVS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFY 368 ++ G+F + C K R Q V V+ D V F++ V GQA VFY Sbjct: 291 FVHKGVFGGE--EELACTAKFRYRQADHEVTVRMTGTDEAEVVFKEPVRAVTPGQAVVFY 348 Query: 369 TSDSNEARVLGGGII 383 + LGGG I Sbjct: 349 KGEE----CLGGGTI 359 >gi|126696814|ref|YP_001091700.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str. MIT 9301] gi|205816922|sp|A3PEC4|MNMA_PROM0 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|126543857|gb|ABO18099.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus str. MIT 9301] Length = 385 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 143/377 (37%), Positives = 210/377 (55%), Gaps = 32/377 (8%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++V +SGGVDSS+ AALL G++V G+TL L K +GSCC+ + + DA +C+ Sbjct: 26 IIVGLSGGVDSSLSAALLVERGWNVEGLTLWLI------KGQGSCCS-EGLVDAAGLCED 78 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVL 141 + ++H + D E F VI SY G TPLPC CN+ VKF ++L+ + + Sbjct: 79 LGINHKIIDSREIFEREVIKKTTESYEKGFTPLPCSMCNKNVKFEEMLNYAVNKKDFTHI 138 Query: 142 ATGHYIR---SRLYVGDDGKRRR----IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 ATGHY R S D K + ++ R D +DQSYFL++ +Q+ L L FPLG+ Sbjct: 139 ATGHYARIKKSSYAETLDCKSFKFKDFLLLRGADENKDQSYFLYSLSQEVLSRLEFPLGE 198 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQIL 253 MKKE R A +GL A K +SQD+C V+ Y + + I+ I EG+IVH+NG++L Sbjct: 199 MKKEETRKEALRLGLRTAQKPESQDLCLVEH--YGSMQRFIDKHIEPKEGEIVHVNGKVL 256 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G HNGI ++TIGQR+GLG+A +PL+V LD+ + V V + L + ++NW+ Sbjct: 257 GTHNGIQHFTIGQRKGLGIAWPDPLYVKSLDRVKNIVYVADKSDLFNREAIITKVNWVS- 315 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPV--PVFVQRNDDGVYVD----FEKSEVGVASGQACVF 367 E+ + + +IR PV + +N D FE+S+ V GQA VF Sbjct: 316 --IEEPKQE-IEVEAQIRYRSHPVKGTLIPLKNFDNPTTTFKLIFEESQSSVTPGQAAVF 372 Query: 368 YTSDSNEARVLGGGIIS 384 Y + +LGGG+IS Sbjct: 373 YKGEI----LLGGGLIS 385 >gi|218899565|ref|YP_002447976.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus G9842] gi|218543622|gb|ACK96016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus G9842] Length = 372 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 142/379 (37%), Positives = 204/379 (53%), Gaps = 19/379 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 2 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 59 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 119 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 174 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 231 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E+ Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 289 Query: 313 DGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 G + V + FKC K R Q+ V VQ D+ V + ++ + GQA VFY Sbjct: 290 VGWVSNKVKETEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFYDG 349 Query: 371 DSNEARVLGGGIISGSKRS 389 D LGG I RS Sbjct: 350 D----ECLGGATIDEVYRS 364 >gi|68536405|ref|YP_251110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium jeikeium K411] gi|123650729|sp|Q4JUL5|MNMA_CORJK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|68264004|emb|CAI37492.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium jeikeium K411] Length = 395 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 147/390 (37%), Positives = 207/390 (53%), Gaps = 46/390 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRVV AMSGGVDS+V A+ G++VIGV L L S +A R GS CC+ +D DARR Sbjct: 1 MRVVAAMSGGVDSAVAASRALEAGHEVIGVHLALSQSPEAV-RAGSRGCCSLEDSADARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ +RF+ VI F SYA GETP PC+ CN +KF LL + LG Sbjct: 60 VADKLGIPFYVWDFSDRFKADVIDDFVDSYAIGETPNPCLRCNEKIKFEALLDRSIALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGHY +RL+ G +M R +D +DQSY L T +QL FP+GD K Sbjct: 120 DAVVTGHY--ARLHDG-------VMRRGVDANKDQSYVLGVLTDEQLAHCMFPVGDTIKP 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHN 257 +R+ A++ G +A K DS DICF+ G+ + K+I L D +G + H+ Sbjct: 171 EIREEAKDHGFGVASKPDSHDICFIPDGQTQAFLGKKIGLRPGLMKD---QDGSTVAEHD 227 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+ +TIGQR+GLG+ G+P +V +D + V +G R+ L V I + L Sbjct: 228 GVYGFTIGQRKGLGLPREGLDGKPRYVTDIDAATGTVTIGQRDDLRVGGITADRLKRL-- 285 Query: 314 GLFEDAVVDG--FKCFVKIRSSQDPVPVF---------------VQRNDDGVY---VDFE 353 D V G F+C V++R+ VP V++ D+ + +D Sbjct: 286 ----DPAVHGREFECEVQVRAHGGVVPATARLVDDPERTTPAGRVKKEDESPWRLELDLH 341 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGII 383 + GVA GQA V Y D++ +LG G I Sbjct: 342 EPLQGVARGQAAVVYQPDADGDILLGSGTI 371 >gi|228902924|ref|ZP_04067065.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis IBL 4222] gi|228967471|ref|ZP_04128500.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar sotto str. T04001] gi|228792248|gb|EEM39821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar sotto str. T04001] gi|228856708|gb|EEN01227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis IBL 4222] Length = 376 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 142/379 (37%), Positives = 204/379 (53%), Gaps = 19/379 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 6 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E+ Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293 Query: 313 DGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 G + V + FKC K R Q+ V VQ D+ V + ++ + GQA VFY Sbjct: 294 VGWVSNKVKETEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFYDG 353 Query: 371 DSNEARVLGGGIISGSKRS 389 D LGG I RS Sbjct: 354 D----ECLGGATIDEVYRS 368 >gi|15613824|ref|NP_242127.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase [Bacillus halodurans C-125] gi|14195281|sp|Q9KDF2|MNMA_BACHD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|10173877|dbj|BAB04980.1| (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Bacillus halodurans C-125] Length = 371 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 141/375 (37%), Positives = 205/375 (54%), Gaps = 27/375 (7%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K P+ RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 4 KRPEQTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYQD 60 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 +VC+ + +++Y ++E+ + + V F Y AG TP P V CN+ +KF L+ Sbjct: 61 VVQVCNQLGIAYYAVNFEKEYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLNHALT 120 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY + + DG+ + I R D +DQ+YFL A +QQQL + FPLG + Sbjct: 121 LGADYVATGHYAQVK---NVDGQYQLI--RGKDPNKDQTYFLNALSQQQLSRVMFPLGHL 175 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K+ VR +A GL A K DS ICF+ + + + + A G++ L+G++ G Sbjct: 176 EKKEVRAIAERAGLATAKKKDSTGICFIGKRDFKEFLSSYLP--AQPGEMQTLDGEVKGT 233 Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY---LR--EIN 309 H+G++ YT+GQR+GLG+ GEP FV+ KN + I+ + +Y LR ++N Sbjct: 234 HDGLMYYTLGQRQGLGIGGSGEPWFVI--GKNLEKNILYVGQGFHHPGLYSEGLRAIKVN 291 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W + + F+C K R Q V V DG V V F + + + GQA VFY Sbjct: 292 W----ILRRESDEPFECTAKFRYRQPDQKVTVYPQSDGAVEVLFAEPQRAITPGQAVVFY 347 Query: 369 TSDSNEARVLGGGII 383 D LGGG I Sbjct: 348 DGDV----CLGGGTI 358 >gi|317969133|ref|ZP_07970523.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. CB0205] Length = 397 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 143/398 (35%), Positives = 208/398 (52%), Gaps = 33/398 (8%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 + +EA L L + P + RV V +SGGVDSS+ AALL G++V G+TL L + Sbjct: 15 VAATEAGALAIERLRQWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMSG--- 71 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 KG+CCA + + DA VC+ + V H+V D+ E F+ ++ Y AG TPLPC C Sbjct: 72 ---KGACCA-EGLVDAAGVCEQLEVPHHVVDFREHFKEQIVDFLVQGYEAGVTPLPCSRC 127 Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKR-RRIMCRPMDLERDQSYFLF 178 NR VKF +L ++ D +ATGHY R R GD + R + R +D +DQSYFL+ Sbjct: 128 NREVKFGPMLRWAKEERKIDRIATGHYARVRH--GDQSENGRHQLLRGLDERKDQSYFLY 185 Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG 238 Q+ L L FPLG++ K R A GL A K +SQD+C + + ++A Sbjct: 186 DLPQEALGRLVFPLGELTKPDTRLEADRHGLRTAQKPESQDLCLADH--HGSMKAFLDAY 243 Query: 239 IAL-EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES 297 + G IV +GQ++G H+GI ++TIGQR+GLGVA EPL VV LD ++V+V PR Sbjct: 244 LPPRPGQIVLADGQVVGEHDGIEHFTIGQRKGLGVAWSEPLHVVRLDGVMNQVVVAPRRD 303 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP-----VPVFVQRNDDGV---- 348 + +NW+ + V++R P +P+ +D Sbjct: 304 AARGEAVVGAVNWVSIA----PPTEPLDVEVQVRYRSGPQQARLIPLPETESDRAADRPH 359 Query: 349 --YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 ++F + + + GQA VFY + VLGGG+I Sbjct: 360 RCRLEFAEEQFSITPGQAAVFYAGEM----VLGGGLIQ 393 >gi|289549263|ref|YP_003474251.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Thermocrinis albus DSM 14484] gi|289182880|gb|ADC90124.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Thermocrinis albus DSM 14484] Length = 349 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 142/365 (38%), Positives = 195/365 (53%), Gaps = 20/365 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR+ V MSGGVDSSV A LLK +G++VIGVTL+ Y + ++ CC+ QDV DA V Sbjct: 1 MRIAVGMSGGVDSSVTALLLKEEGHEVIGVTLRFYKAVCNTEDLRVCCSPQDVKDAVLVS 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-AD 139 + + H D+E+ F VI F Y G TP PC CNR VK L R + D Sbjct: 61 QRLGIPHITLDWEKIFYERVIKYFVEGYKEGITPNPCAVCNREVKTGFLARYLRNVALID 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 LATGHY+R Y+G ++ R D RDQSYF+ + + L FPLGD KE Sbjct: 121 RLATGHYVRKIQYMGYS-----LLARGKDTTRDQSYFMALVRGEDIPLLEFPLGDKTKEE 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E GL A K DSQ++CF+ + +K I EG IV+ G+++G+H G Sbjct: 176 VRKIAEEKGLPTARKRDSQEVCFLMGRSPGEYMKDILG--EREGPIVY-KGKVVGKHRGY 232 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YT+GQRRGL VA+G+P++V +D ++ V VG E L + L +IN F Sbjct: 233 YAYTVGQRRGLSVALGKPVYVTGIDPITNTVFVGDEEELYKDWLLLEDIN------FHLP 286 Query: 320 VVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + V+ R V V +++ +G V ++ + GQ C FY D +L Sbjct: 287 MHLWSRPAVQTRYRSKTVEVRDIEKLPNGYKVYLKEPVRAITPGQVCAFYEGDV----LL 342 Query: 379 GGGII 383 GGGII Sbjct: 343 GGGII 347 >gi|298245195|ref|ZP_06969001.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Ktedonobacter racemifer DSM 44963] gi|297552676|gb|EFH86541.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Ktedonobacter racemifer DSM 44963] Length = 391 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 141/399 (35%), Positives = 202/399 (50%), Gaps = 46/399 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR---------KGSCCAGQD 72 R+VVAMSGGVDSSV AALLK G++VIG+ L+L++ + + CC+ + Sbjct: 3 RIVVAMSGGVDSSVAAALLKEQGHEVIGMMLRLWSEPGVIEAEDDGVERVVQNKCCSLES 62 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 V DARRV +++ Y+ + E+ F+ ++ F Y AG TP PC+ CNR ++F+ LL+ Sbjct: 63 VDDARRVARMLDIPFYLVNVEQEFKERIVDSFYEDYVAGRTPNPCLTCNRHIRFTVLLNK 122 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRR--RIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 L AD LATGHY+R DD + R + R +D ++DQSY L Q QL F Sbjct: 123 ALALEADYLATGHYVRV-----DDHPQTGRRRLRRGLDPDKDQSYVLHVLNQHQLSHACF 177 Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG------------ 238 PLG K VR +A E G+++A K++SQ+ICFV Q Y + R A Sbjct: 178 PLGGYTKPQVRAMAAERGMNVATKAESQEICFVAQNDYRGFIDRYAASKQEDDALVPAGV 237 Query: 239 ------------IALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKN 286 I G I G +LGRH G+ YTIGQR+GLG+ PL V+ LD + Sbjct: 238 TATATAAQPLITIPRPGPIYDQQGTLLGRHRGLAYYTIGQRKGLGLTSPAPLHVLKLDAD 297 Query: 287 SSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-ND 345 + +IVGP +L+ + ++++ D F+ V++R P V Sbjct: 298 QNALIVGPATALDQQEFTIGKMHYTTG----DVPTAPFEALVRVRYKAPEQPALVTPLEG 353 Query: 346 DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 V + + GQA V Y + + VLGGGII Sbjct: 354 QRARVQLVHPQRAITPGQAAVLYGGEDGD-EVLGGGIIE 391 >gi|269794372|ref|YP_003313827.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sanguibacter keddieii DSM 10542] gi|269096557|gb|ACZ20993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sanguibacter keddieii DSM 10542] Length = 407 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 150/399 (37%), Positives = 211/399 (52%), Gaps = 35/399 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+V+ AMSGGVDS+V AA + G++V+GV + L +R R+GS CC+ +D DARR Sbjct: 1 MKVLAAMSGGVDSAVAAARIVDAGHEVVGVHMALSRNRN-QFREGSRGCCSIEDAGDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + +YV+D E+F + V+ F S YAAG TP PCV CN +KF LL LG Sbjct: 60 AADVLGIPYYVWDLSEKFEDTVVADFLSEYAAGRTPNPCVRCNEHIKFEALLDKATALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197 D +ATGHY + DG R + R + +DQSY L ++L FPLG + K Sbjct: 120 DAVATGHYAQVITSTRPDGSELRELHRSPNTAKDQSYVLAVMGPERLRRAMFPLGAFESK 179 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVHLNGQILGR 255 ++VR A GL ++ K DS DICFV G K F + +R+ GDIV ++G +LG Sbjct: 180 DAVRAEAAARGLSVSAKPDSYDICFVADGDTKGF-LQERLGTKT---GDIVDVDGTVLGE 235 Query: 256 HNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 H G YT+GQR+GL + A G+ +V+ + S+ V+VGP E L V RI + WL Sbjct: 236 HEGAYAYTVGQRKGLAIGRPAADGKARYVLDIQPVSNTVVVGPAEMLSVDRITGDQSVWL 295 Query: 312 GD----------GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD------GVYVDFEKS 355 D G A V++R+ +PVP V+ D G+ V+ + Sbjct: 296 ADDVLAAHGAETGSTAAAPSGWIDAEVQVRAHGEPVPARVRAVPDASGATGGMEVELVGA 355 Query: 356 EV-GVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVE 393 + GVA+GQ+ V Y RVLG + S R+ E Sbjct: 356 TLRGVAAGQSLVAYLG----TRVLGQSTVVASTRAGRAE 390 >gi|205815001|sp|A1R863|MNMA_ARTAT RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 379 Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 146/384 (38%), Positives = 200/384 (52%), Gaps = 29/384 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV+GV L L + + R GS CC +D DA R Sbjct: 1 MRVLAAMSGGVDSAVAAARAVEAGHDVVGVHLAL-SRMPGTLRTGSRGCCTIEDSRDAWR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 CD + + +YV+D+ ERF+ V+ F YAAG TP PC+ CN +KF+ LL LG Sbjct: 60 ACDVLGIPYYVWDFSERFKEDVVQDFIDEYAAGRTPNPCMRCNERIKFAALLEKAIALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197 D + TGHY + V +D R + R D +DQSY L T +QL FPL D K Sbjct: 120 DAVCTGHYAK----VIEDADGNRELHRAADWAKDQSYVLGVLTHEQLKHSMFPLADTPSK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRH 256 VR A GL +A+K DS DICF+ G + ++I+ GDIV G +G H Sbjct: 176 AEVRAEAERRGLSVANKPDSHDICFISDGDTRGWLAEKID---MTTGDIVDETGAKVGEH 232 Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G +T+GQRRGL + A G+P FV+ + ++V+VGP L + I +++W G Sbjct: 233 PGANAFTVGQRRGLKLGTPAADGKPRFVLEIRPKENKVVVGPEALLAIDEIRGIKVSWAG 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ----RNDDGV-----YVDFEKSEVGVASGQ 363 + E A F C ++R+ DPVP + ++ GV V GVA GQ Sbjct: 293 LPISEVATGAEFDCHAQVRAHGDPVPAIARVEAVTDESGVERAQLVVTLTDPLRGVAPGQ 352 Query: 364 ACVFYTSDSNEARVLGGGIISGSK 387 V Y +RVLG I ++ Sbjct: 353 TVVLYQG----SRVLGQATIDAAR 372 >gi|304413559|ref|ZP_07395032.1| putative tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Candidatus Regiella insecticola LSR1] gi|304284402|gb|EFL92795.1| putative tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Candidatus Regiella insecticola LSR1] Length = 367 Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 134/374 (35%), Positives = 209/374 (55%), Gaps = 32/374 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +++V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 8 KIIVGMSGGVDSSVAAYLLKQQGYQVAGLFMKNW---EEDDNDTYCGAAKDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140 +N++ + ++ + + V F + Y AG TP P + CN+ +KF+ LS +L AD Sbjct: 65 KLNINLHRVNFAAEYWDNVFKLFLAEYQAGRTPNPDILCNKEIKFNAFLSFACEELEADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R G + + R +D +DQSYFL+ QQQL FP+GD+KK V Sbjct: 125 IATGHYVRRHTSAG-----KNCLLRGLDDNKDQSYFLYTLNQQQLARSLFPIGDLKKSEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A ++ L A K DS ICF+ + K+ D + R A G I+ ++GQ LG+H+G++ Sbjct: 180 RNIAEQLNLITAKKKDSTGICFIGERKFRDFLARYLP--AQPGSIISVDGQDLGQHHGLM 237 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKN--SSRVIVG---PRESLEVHRIYLREINW 310 +T+GQR+GLG+ G P +VV DKN ++ ++V L H + ++++W Sbjct: 238 YHTLGQRKGLGIGGIKEGNGAPWYVV--DKNIATNTLLVAQDHKHAKLMSHGLIAQQLSW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYT 369 + ++ +C VK R Q +P V + ++ + V FE+ V V GQ+ VFY Sbjct: 296 ID----LPSLTFPLRCMVKTRYRQQDIPCTVFSKAENSIEVRFEQPIVAVTPGQSAVFYQ 351 Query: 370 SDSNEARVLGGGII 383 D LGGGII Sbjct: 352 GDI----CLGGGII 361 >gi|305682215|ref|ZP_07405019.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium matruchotii ATCC 14266] gi|305658688|gb|EFM48191.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium matruchotii ATCC 14266] Length = 366 Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 149/376 (39%), Positives = 202/376 (53%), Gaps = 23/376 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRV 79 MRV+ AMSGGVDS+V AA + G+DV+GV L L +A + CC+ +D DARRV Sbjct: 1 MRVLAAMSGGVDSAVAAARAVKAGHDVVGVHLALSQDPQAVRESSRGCCSLEDSADARRV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + + YV+D+ +RF+ VI F SYA GETP PC+ CN +KF+ LL LG D Sbjct: 61 CDKLGIPFYVWDFSDRFKTDVIDDFVDSYARGETPNPCLRCNEKIKFAALLERGIALGFD 120 Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + TGHY R ++ G DG R R +D +DQSY L ++ FP+GD K Sbjct: 121 AVVTGHYARLTQPADGGDGYLR----RGVDPNKDQSYVLGVLGHHEIAHCMFPVGDTIKP 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257 +R+ A MG +A K DS DICF+ G + + I L G IV G L H+ Sbjct: 177 KIREEAAAMGFSVAKKPDSYDICFIPDG---NTQAFLGERIGLRPGMIVDTEGNKLREHD 233 Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G NYTIGQR+GL + A G+P +V ++ + V VG R L V I + +L Sbjct: 234 GAWNYTIGQRKGLDIKQPAADGQPRYVTDINAQTGTVTVGSRRDLSVGVIEADRLKYL-- 291 Query: 314 GLFEDAVVDG-FKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 ++DG F V++R+ VP V V R D + ++ +K+ GVA GQA V Y Sbjct: 292 ----HPMMDGSFDADVQVRAHGSVVPCHVTVDREADFMRLELKKALQGVARGQAAVLYLP 347 Query: 371 DSNEARVLGGGIISGS 386 D VLG G I G+ Sbjct: 348 DPGGDIVLGSGTICGT 363 >gi|296124260|ref|YP_003632038.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Planctomyces limnophilus DSM 3776] gi|296016600|gb|ADG69839.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Planctomyces limnophilus DSM 3776] Length = 392 Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 144/389 (37%), Positives = 209/389 (53%), Gaps = 31/389 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS---------------KRKGS 66 RVV+AMSGGVDSSV A LL++ GY+VIG+ ++ + ++ K Sbjct: 9 RVVLAMSGGVDSSVAAVLLQQQGYEVIGLFMRSGEASASACSLPPSGLLPVIERKSHKQG 68 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 CC+ D DA+RV D +++ + ++ + F + + FA Y G TP PCV CN +KF Sbjct: 69 CCSAADAADAQRVADLLDIPFHALNFRDSF-DQIKSYFADEYLKGRTPNPCVMCNVWLKF 127 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L +Q+GA +ATGHY R + D+ + R+M R DL +DQSY LF L Sbjct: 128 GRLWEFAQQVGATRIATGHYAR---IIQDEFGQTRLM-RGADLSKDQSYVLFGIRPDILS 183 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 + FP+G K +R++A + L +A K DSQ+ICF+ Y ++R G+ V Sbjct: 184 KILFPVGHQPKAEIREIAAQANLRVAGKPDSQEICFIPDNDYRGFLRRYRDVSDTSGNFV 243 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 G+ILG+H+G +TIGQRRGLG+A+GEP FV+ +D S V +G E L + Sbjct: 244 DPQGKILGQHSGFEQFTIGQRRGLGIALGEPRFVIKIDAESRNVTLGTAEELGSSSLVAA 303 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365 NWL + F C +IRS + Q + DG +++ F + + GVA GQA Sbjct: 304 RTNWL-----SAPTSEVFSCTAQIRSMHRAAAAWAQVDADGTLHLRFCEPQSGVAPGQAV 358 Query: 366 VFYTSDSNEARVLGGGIISGSK--RSDAV 392 V Y DS E RV+ G I S+ R+DA+ Sbjct: 359 VLY--DSLE-RVICGAWIEDSQPPRADAL 384 >gi|271969310|ref|YP_003343506.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Streptosporangium roseum DSM 43021] gi|270512485|gb|ACZ90763.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Streptosporangium roseum DSM 43021] Length = 356 Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 144/371 (38%), Positives = 199/371 (53%), Gaps = 27/371 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 +RV+ AMSGGVDS+V AA + G+DV GV L L ++ S R G+ CC +D DARR Sbjct: 3 LRVLAAMSGGVDSAVAAARIAEAGHDVTGVHLAL-SANPQSYRTGARGCCTIEDSRDARR 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D I + Y++D ERF V+ F S YAAG TP PC+ CN +KF +L LG Sbjct: 62 AADVIGIPFYIWDMAERFHRDVVEDFVSEYAAGRTPNPCLRCNEKIKFEAVLDRALALGF 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGH+ R DG ++ R D +DQSY L T++QL FPLGD K Sbjct: 122 DAVATGHHARIA-----DG----VLSRSPDEGKDQSYVLGVLTREQLKHAIFPLGDSTKA 172 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRHN 257 VR+ A GL +ADK DS DICF+ G + R+ A +G IV +G ++GRH Sbjct: 173 QVREEAARRGLMVADKPDSHDICFIADGDTRGFLADRLG---AEQGPIVDESGAVVGRHE 229 Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G +T+GQR+GL + G P +V+ ++ S+ V VGPR +LEV I W G Sbjct: 230 GAYGFTVGQRKGLHIDRPAPDGRPRYVLSIEPVSNTVTVGPRSALEVTGIVATRPVWNGP 289 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 D + C V++R+ + Q + D V++ + GVA+GQA V Y D+ Sbjct: 290 A---DVPHEPLTCTVQLRAHGEVYGCRAQLSGDEVHIALDTPATGVAAGQAAVLYLGDT- 345 Query: 374 EARVLGGGIIS 384 V+G I+ Sbjct: 346 ---VIGSATIA 353 >gi|254525416|ref|ZP_05137468.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus str. MIT 9202] gi|221536840|gb|EEE39293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus str. MIT 9202] Length = 385 Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 137/377 (36%), Positives = 207/377 (54%), Gaps = 32/377 (8%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++V +SGGVDSS+ AALL G++V G+TL L K +GSCC+ + + DA +C+ Sbjct: 26 IIVGLSGGVDSSLSAALLVEKGWNVEGLTLWLM------KGQGSCCS-EGLVDAAGLCED 78 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVL 141 + ++H + D E F VI SY G TPLPC CN+ VKF ++L+ + + Sbjct: 79 LGINHKIIDSREIFEREVIKKTTDSYEKGLTPLPCSMCNKNVKFEEMLNYAINKKDFTHI 138 Query: 142 ATGHYIR-------SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 ATGHY R +L + ++ R D +DQSYFL++ +Q+ L L FPLG+ Sbjct: 139 ATGHYARIKKSSYVEKLNCKSFVFKEFLLLRGADENKDQSYFLYSLSQEVLSRLEFPLGE 198 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQIL 253 MKKE R A +GL A K +SQD+C V+ Y + + I+ I EG+I+H+NG++L Sbjct: 199 MKKEETRKEALRLGLRTAQKPESQDLCLVEH--YGSMQRFIDKHIEPKEGEIMHVNGKVL 256 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G H GI ++T+GQR+GLG+A EPL+V LD+ + V V + L + ++NW+ Sbjct: 257 GTHKGIQHFTVGQRKGLGIAWPEPLYVKSLDRGKNIVYVSDKSDLFNKEAIISKVNWVSI 316 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPV--PVFVQRNDDG----VYVDFEKSEVGVASGQACVF 367 D + +IR PV + +N D + FE+++ + GQA VF Sbjct: 317 ----DEPKQEIEVEAQIRYRSHPVKGTLIPLKNLDNPTKKFKLIFEENQSSITPGQAAVF 372 Query: 368 YTSDSNEARVLGGGIIS 384 Y D +LGGG+I+ Sbjct: 373 YKGDI----LLGGGLIN 385 >gi|159903879|ref|YP_001551223.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str. MIT 9211] gi|205816902|sp|A9BBQ7|MNMA_PROM4 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|159889055|gb|ABX09269.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus str. MIT 9211] Length = 406 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 142/407 (34%), Positives = 217/407 (53%), Gaps = 51/407 (12%) Query: 10 NSLDLDKNPKDMRVV-------------VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN 56 N L+++P +M VV V +SGGVDSS+ AALL G+ V G+TL L Sbjct: 13 NKSKLERSPIEMEVVSHLKQLQGEHAIAVGLSGGVDSSLTAALLVEAGWKVEGLTLWLME 72 Query: 57 SRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116 KGSCC + + DA +C+ + + H+V D F+ V+ + Y G TPLP Sbjct: 73 G------KGSCCT-EGLVDAAGICEQLKIPHHVVDERSTFQKEVVENLVNGYQEGITPLP 125 Query: 117 CVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIR------SRLYVGDDGKRRRIMCRPMDL 169 C CNR VKFS +++ R+ +ATGHY R ++L D+ K R + R +D Sbjct: 126 CSRCNRFVKFSPMINWARKNRNLKRIATGHYARIKHAETNKLNSLDERKNRHQLLRGIDQ 185 Query: 170 ERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYF 229 +DQSYFL+ +Q+ L + FPLG + K R A GL A+K +SQD+C + K+ Sbjct: 186 NKDQSYFLYDLSQEILGHVVFPLGALTKSFTRKEANRYGLRTANKKESQDLCLAE--KHG 243 Query: 230 DVVKRINAGIAL-EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSS 288 + +N + +G+IV +G ++G H+GI ++TIGQR+GLG+A EPL V+ + + + Sbjct: 244 SMKAFLNNYLPPRKGEIVLTDGLVVGEHDGIEHFTIGQRKGLGIAWKEPLHVINIQPSLN 303 Query: 289 RVIVGPRESLEVHRIYLREINWLG-DGLFEDAVVDGFKCFVKIRSSQDPV--------PV 339 RVIVGPR+ + E+NW+ ++ +V+ V++R DPV P Sbjct: 304 RVIVGPRDQSGRSNCTVGEVNWVSISAPMQERLVE-----VQVRYRSDPVKAKLVPIEPT 358 Query: 340 FVQRNDDGVY---VDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 ++ + ++FE + ++ GQA VFY + VLGGGII Sbjct: 359 IKDIKNNRPHRCRIEFENPQFSISPGQAAVFYKGEV----VLGGGII 401 >gi|90408225|ref|ZP_01216392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Psychromonas sp. CNPT3] gi|90310671|gb|EAS38789.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Psychromonas sp. CNPT3] Length = 369 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 131/374 (35%), Positives = 209/374 (55%), Gaps = 28/374 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 ++V+V MSGGVDSSV A LL++ GY V G+ ++ + +S+ C A QD+ DA+ VC Sbjct: 7 IKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDSSEY---CAAAQDLQDAQAVC 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139 D +++ + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 DKLDIKLHTVNFSAEYWDNVFEHFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAEDLGAD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R R G + R +D +DQSYFL+A ++Q+ FP+G+++K Sbjct: 124 FIATGHYVRRREVNG-----HVQLLRGLDTNKDQSYFLYAVGEKQIAQTLFPVGELEKPE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A + GL A+K DS ICF+ + K+ D ++ A GDIV G+++G+H G+ Sbjct: 179 VRRIAEQQGLITANKKDSTGICFIGERKFTDFLQEYLP--AQPGDIVTPEGKVIGKHQGL 236 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +T+GQR+GLG+ A +P +VV D ++R++V +L + + + +W+ Sbjct: 237 MYHTLGQRKGLGIGGRQDANEDPWYVVAKDMPNNRLLVAQGANNPALLSYGLIATKCDWV 296 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTS 370 + ++A F C +K R Q VP V +DD + V FE + V GQ+ VFY Sbjct: 297 DRKILKEA----FTCTLKTRYRQQDVPCTVTPLDDDTLRVIFETPQSAVTPGQSAVFYMQ 352 Query: 371 DSNEARVLGGGIIS 384 + LGG II Sbjct: 353 EV----CLGGAIIE 362 >gi|47566584|ref|ZP_00237406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus G9241] gi|49481478|ref|YP_038446.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141111|ref|YP_085718.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus E33L] gi|222097839|ref|YP_002531896.1| tRNA-specific 2-thiouridylase mnma [Bacillus cereus Q1] gi|254724677|ref|ZP_05186460.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. A1055] gi|300119218|ref|ZP_07056915.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus SJ1] gi|301055904|ref|YP_003794115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis CI] gi|71658010|sp|Q634E9|MNMA_BACCZ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|73919896|sp|Q6HDD0|MNMA_BACHK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205814924|sp|A0RJ05|MNMA_BACAH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|254811444|sp|B9IYG1|MNMA_BACCQ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|47556614|gb|EAL14946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus G9241] gi|49333034|gb|AAT63680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974580|gb|AAU16130.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus E33L] gi|221241897|gb|ACM14607.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Q1] gi|298723438|gb|EFI64183.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus SJ1] gi|300378073|gb|ADK06977.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus biovar anthracis str. CI] Length = 371 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 142/383 (37%), Positives = 205/383 (53%), Gaps = 27/383 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 118 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 173 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 288 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 + W+ + +A FKC K R Q+ V VQ D+ V + ++ + GQA V Sbjct: 289 VGWVSN----EAKEKEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 344 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 FY D LGG I RS Sbjct: 345 FYDGD----ECLGGATIDEVYRS 363 >gi|218232235|ref|YP_002369206.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus B4264] gi|218160192|gb|ACK60184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus B4264] Length = 372 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 142/383 (37%), Positives = 205/383 (53%), Gaps = 27/383 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P++ RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 2 MNKLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 59 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 119 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 174 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 231 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 289 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 + W+ + E FKC K R Q+ V VQ D+ V + ++ + GQA V Sbjct: 290 VGWVSNKEKETE----FKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 345 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 FY D LGG I RS Sbjct: 346 FYDGD----ECLGGATIDEVYRS 364 >gi|196039389|ref|ZP_03106695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus NVH0597-99] gi|206976034|ref|ZP_03236944.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus H3081.97] gi|217961886|ref|YP_002340456.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus AH187] gi|218905591|ref|YP_002453425.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH820] gi|225866378|ref|YP_002751756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus 03BB102] gi|196030016|gb|EDX68617.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus NVH0597-99] gi|206745786|gb|EDZ57183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus H3081.97] gi|217066211|gb|ACJ80461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH187] gi|218535576|gb|ACK87974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH820] gi|225789110|gb|ACO29327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus 03BB102] Length = 372 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 142/383 (37%), Positives = 205/383 (53%), Gaps = 27/383 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 2 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 59 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 119 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 174 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 231 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 289 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 + W+ + +A FKC K R Q+ V VQ D+ V + ++ + GQA V Sbjct: 290 VGWVSN----EAKEKEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 345 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 FY D LGG I RS Sbjct: 346 FYDGD----ECLGGATIDEVYRS 364 >gi|118479554|ref|YP_896705.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis str. Al Hakam] gi|228929441|ref|ZP_04092462.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935717|ref|ZP_04098530.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948110|ref|ZP_04110394.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228987648|ref|ZP_04147762.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229093467|ref|ZP_04224570.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Rock3-42] gi|229123937|ref|ZP_04253129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus 95/8201] gi|229141133|ref|ZP_04269675.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus BDRD-ST26] gi|229158012|ref|ZP_04286083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus ATCC 4342] gi|118418779|gb|ABK87198.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|228625465|gb|EEK82221.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus ATCC 4342] gi|228642411|gb|EEK98700.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus BDRD-ST26] gi|228659239|gb|EEL14887.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus 95/8201] gi|228689938|gb|EEL43742.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Rock3-42] gi|228772108|gb|EEM20560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228811468|gb|EEM57805.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823955|gb|EEM69774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830229|gb|EEM75845.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 376 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 142/383 (37%), Positives = 205/383 (53%), Gaps = 27/383 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 6 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 + W+ + +A FKC K R Q+ V VQ D+ V + ++ + GQA V Sbjct: 294 VGWVSN----EAKEKEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 349 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 FY D LGG I RS Sbjct: 350 FYDGD----ECLGGATIDEVYRS 368 >gi|229186636|ref|ZP_04313797.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus BGSC 6E1] gi|228596895|gb|EEK54554.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus BGSC 6E1] Length = 376 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 142/383 (37%), Positives = 205/383 (53%), Gaps = 27/383 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 6 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 + W+ + +A FKC K R Q+ V VQ D+ V + ++ + GQA V Sbjct: 294 VGWVSN----EAKEKEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 349 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 FY D LGG I RS Sbjct: 350 FYGGD----ECLGGATIDEVYRS 368 >gi|165872748|ref|ZP_02217376.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. A0488] gi|167636496|ref|ZP_02394793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. A0442] gi|167638584|ref|ZP_02396860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. A0193] gi|170689637|ref|ZP_02880819.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. A0465] gi|170709396|ref|ZP_02899807.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. A0389] gi|177653267|ref|ZP_02935519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. A0174] gi|190566853|ref|ZP_03019769.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis Tsiankovskii-I] gi|227817175|ref|YP_002817184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. CDC 684] gi|229601635|ref|YP_002868683.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. A0248] gi|164711524|gb|EDR17073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. A0488] gi|167513432|gb|EDR88802.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. A0193] gi|167528089|gb|EDR90886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. A0442] gi|170125695|gb|EDS94611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. A0389] gi|170666407|gb|EDT17188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. A0465] gi|172081549|gb|EDT66621.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. A0174] gi|190561844|gb|EDV15813.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis Tsiankovskii-I] gi|227004048|gb|ACP13791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. CDC 684] gi|229266043|gb|ACQ47680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. A0248] Length = 372 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 142/383 (37%), Positives = 205/383 (53%), Gaps = 27/383 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 2 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 59 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 119 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 174 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 231 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 289 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 + W+ + +A FKC K R Q+ V VQ D+ V + ++ + GQA V Sbjct: 290 VGWVSN----EAKEKEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 345 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 FY D LGG I RS Sbjct: 346 FYDGD----ECLGGATIDEVYRS 364 >gi|296127476|ref|YP_003634728.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Brachyspira murdochii DSM 12563] gi|296019292|gb|ADG72529.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Brachyspira murdochii DSM 12563] Length = 352 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 131/369 (35%), Positives = 201/369 (54%), Gaps = 27/369 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD---VYDARR 78 ++ V MS GVDS+ A +LK G +V GVT+ L+N K + GSC + V + R+ Sbjct: 3 KIAVGMSAGVDSTTTAKILKEKGNEVFGVTMLLWNGDKRAPLSGSCYSPSQLKMVEECRK 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 I + +Y FD + F+ VI A SY G TP PC+ CN +KF L + G Sbjct: 63 YAQAIGIDYYAFDVSDMFQKKVIDYVAESYKKGLTPNPCIMCNSQIKFMALFEAIEKQGL 122 Query: 139 --DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 D ATGHY + D+ +R ++ R +L +DQSYFL+ TQ QL + FP+ + Sbjct: 123 EFDKFATGHYAGIKY---DEKTKRYLLLRGKNLIKDQSYFLYRLTQNQLSKIIFPMHENT 179 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGR 255 KE R +ARE L++A+KS+SQD + + FD + EGDI++++ +ILG Sbjct: 180 KEDTRKMAREYNLEVAEKSESQDFFAGEYSRLFDEDR--------EGDIINIDTNEILGH 231 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H GI +YT+GQR+GLG+A EPLFVV LD ++ V VG + V+ + + ++NW+ + Sbjct: 232 HKGIWHYTVGQRKGLGIAYKEPLFVVSLDSKTNTVYVGNKNHTFVNEVTVYDVNWIAEPR 291 Query: 316 FEDAVVDGFKCFVKIRSSQD-PVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 ++ F+ VK RS+ + + ++ + + F + VA GQ+CV Y D Sbjct: 292 DKE-----FEALVKTRSAHKGSMARVIPIEENVINIKFFEPTGIVARGQSCVCYDEDV-- 344 Query: 375 ARVLGGGII 383 L GG++ Sbjct: 345 --TLCGGVV 351 >gi|196044752|ref|ZP_03111986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus 03BB108] gi|196024240|gb|EDX62913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus 03BB108] Length = 372 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 142/383 (37%), Positives = 205/383 (53%), Gaps = 27/383 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 2 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 59 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 119 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 174 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 231 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 289 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 + W+ + +A FKC K R Q+ V VQ D+ V + ++ + GQA V Sbjct: 290 VGWVSN----EAKEKEFKCTAKFRYRQEDNKVSVQIVDENTVRILCDEPIRAITPGQAVV 345 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 FY D LGG I RS Sbjct: 346 FYDGD----ECLGGATIDEVYRS 364 >gi|30264466|ref|NP_846843.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Ames] gi|47529924|ref|YP_021273.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. 'Ames Ancestor'] gi|49187287|ref|YP_030539.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Sterne] gi|254684152|ref|ZP_05148012.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. CNEVA-9066] gi|254736499|ref|ZP_05194205.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Western North America USA6153] gi|254741537|ref|ZP_05199224.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Kruger B] gi|254751364|ref|ZP_05203401.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Vollum] gi|254757696|ref|ZP_05209723.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Australia 94] gi|73919893|sp|Q81JE5|MNMA_BACAN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|30259124|gb|AAP28329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. Ames] gi|47505072|gb|AAT33748.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. 'Ames Ancestor'] gi|49181214|gb|AAT56590.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. Sterne] Length = 371 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 142/383 (37%), Positives = 205/383 (53%), Gaps = 27/383 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 118 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 173 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 288 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 + W+ + +A FKC K R Q+ V VQ D+ V + ++ + GQA V Sbjct: 289 VGWVSN----EAKEKEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 344 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 FY D LGG I RS Sbjct: 345 FYDGD----ECLGGATIDEVYRS 363 >gi|65321763|ref|ZP_00394722.1| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Bacillus anthracis str. A2012] Length = 376 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 142/383 (37%), Positives = 205/383 (53%), Gaps = 27/383 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 6 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 + W+ + +A FKC K R Q+ V VQ D+ V + ++ + GQA V Sbjct: 294 VGWVSN----EAKEKEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 349 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 FY D LGG I RS Sbjct: 350 FYDGD----ECLGGATIDEVYRS 368 >gi|229032046|ref|ZP_04188029.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH1271] gi|228729291|gb|EEL80285.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH1271] Length = 376 Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 143/383 (37%), Positives = 205/383 (53%), Gaps = 27/383 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P++ RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 6 MNKLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A E GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 178 ELKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 I W+ + +A FKC K R Q+ V VQ D+ V + ++ + GQA V Sbjct: 294 IGWVSN----EAKEKEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 349 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 FY D LGG I RS Sbjct: 350 FYDGD----ECLGGATIDEVYRS 368 >gi|119962187|ref|YP_948425.1| tRNA-specific 2-thiouridylase MnmA [Arthrobacter aurescens TC1] gi|119949046|gb|ABM07957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arthrobacter aurescens TC1] Length = 436 Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 146/384 (38%), Positives = 200/384 (52%), Gaps = 29/384 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV+GV L L + + R GS CC +D DA R Sbjct: 58 MRVLAAMSGGVDSAVAAARAVEAGHDVVGVHLAL-SRMPGTLRTGSRGCCTIEDSRDAWR 116 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 CD + + +YV+D+ ERF+ V+ F YAAG TP PC+ CN +KF+ LL LG Sbjct: 117 ACDVLGIPYYVWDFSERFKEDVVQDFIDEYAAGRTPNPCMRCNERIKFAALLEKAIALGF 176 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197 D + TGHY + V +D R + R D +DQSY L T +QL FPL D K Sbjct: 177 DAVCTGHYAK----VIEDADGNRELHRAADWAKDQSYVLGVLTHEQLKHSMFPLADTPSK 232 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRH 256 VR A GL +A+K DS DICF+ G + ++I+ GDIV G +G H Sbjct: 233 AEVRAEAERRGLSVANKPDSHDICFISDGDTRGWLAEKID---MTTGDIVDETGAKVGEH 289 Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G +T+GQRRGL + A G+P FV+ + ++V+VGP L + I +++W G Sbjct: 290 PGANAFTVGQRRGLKLGTPAADGKPRFVLEIRPKENKVVVGPEALLAIDEIRGIKVSWAG 349 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ----RNDDGV-----YVDFEKSEVGVASGQ 363 + E A F C ++R+ DPVP + ++ GV V GVA GQ Sbjct: 350 LPISEVATGAEFDCHAQVRAHGDPVPAIARVEAVTDESGVERAQLVVTLTDPLRGVAPGQ 409 Query: 364 ACVFYTSDSNEARVLGGGIISGSK 387 V Y +RVLG I ++ Sbjct: 410 TVVLYQG----SRVLGQATIDAAR 429 >gi|226312727|ref|YP_002772621.1| tRNA U34-sulfurtransferase [Brevibacillus brevis NBRC 100599] gi|226095675|dbj|BAH44117.1| tRNA U34-sulfurtransferase [Brevibacillus brevis NBRC 100599] Length = 370 Score = 222 bits (565), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 145/379 (38%), Positives = 210/379 (55%), Gaps = 31/379 (8%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K P+D RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D D Sbjct: 2 KRPEDTRVVVGMSGGVDSSVTAYLLKQQGYDVIGIFMKNWDD---TDEFGHCTAEEDFQD 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 RRVC+ I + +Y ++E+ + + V F Y G TP P V CNR +KF +LL+ Sbjct: 59 VRRVCEQIGIPYYTVNFEKEYMDKVFQYFLDEYKRGRTPNPDVMCNREIKFGELLAKVMD 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY + + Y+ DG+ + I R D +DQ+YFL Q+QL FP+G + Sbjct: 119 LGADYIATGHYAQVK-YI--DGEYKLI--RGADNNKDQTYFLNVLGQEQLSKTMFPIGHL 173 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K VR++A + GL A K DS ICF+ + + + ++ N A +G+I ++G ++G Sbjct: 174 PKPQVREIAEKAGLYTAKKKDSTGICFIGERNFREFLQ--NYLPAKQGNIETVDGAVIGT 231 Query: 256 HNGIINYTIGQRR-----GLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR---- 306 H+G++ YT+GQR+ G G+P FVV D + +IVG E + R+Y + Sbjct: 232 HDGLMYYTLGQRQGLGIGGGHGTSGQPWFVVDKDLERNALIVG--EGSDHIRLYSKSLLA 289 Query: 307 -EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364 ++W+ D + F C K R Q V V +DG V V F++ + V GQA Sbjct: 290 TNVSWVSD----KKPSETFTCTAKFRYRQPDQGVTVHLLEDGNVEVVFDQPQKAVTPGQA 345 Query: 365 CVFYTSDSNEARVLGGGII 383 VFY N LGGG I Sbjct: 346 VVFY----NGEVCLGGGTI 360 >gi|309812162|ref|ZP_07705920.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dermacoccus sp. Ellin185] gi|308433849|gb|EFP57723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dermacoccus sp. Ellin185] Length = 384 Score = 222 bits (565), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 145/387 (37%), Positives = 209/387 (54%), Gaps = 27/387 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRVV AMSGGVDS+V A+ + G+DV+GV L L S A+ R+ + CC +D DARR Sbjct: 1 MRVVAAMSGGVDSAVAASRMLEAGHDVVGVHLALSQS-AATLRESARGCCTIEDAGDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D ERF+ V+ F + Y AG TP PC+ CN +KF+ LL LG Sbjct: 60 VADRLGIPFYVWDMAERFKADVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY +++ G +GK + R +D+ +DQSY L +QL FPLGD K Sbjct: 120 DAVATGHY--AQIVEGPNGKE---LHRAVDMAKDQSYVLGVLDAEQLAHSFFPLGDTTKP 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVHLNGQILGRH 256 +R+ A G +A+K DS DICF+ G K + + KR+ GDIV +G+++GRH Sbjct: 175 QIREEAAAKGFYVANKPDSHDICFIADGDTKAW-LTKRLG---EKPGDIVDTDGEVVGRH 230 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G YT+GQRRGLG+ + +VV + ++ V+VG + L V I W G Sbjct: 231 EGAYAYTVGQRRGLGLKVPRDDHAKRYVVDVQPKTNTVVVGTADLLGVDVIEGLHARWPG 290 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 V + ++R+ + P V +DD V V + GVA GQ+ V Y Sbjct: 291 -----PPPVGEVRLGAQLRAHGEEFPATVTADDDRVVVRLDARTRGVAPGQSVVLYEG-- 343 Query: 373 NEARVLGGGIISGSKRSDAVEESLLSV 399 RV+G I+ + R+ S+++V Sbjct: 344 --TRVVGSATITATSRAPRQSSSVVTV 368 >gi|42783525|ref|NP_980772.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus ATCC 10987] gi|73919894|sp|Q730D7|MNMA_BACC1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|42739454|gb|AAS43380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus ATCC 10987] Length = 371 Score = 222 bits (565), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 142/383 (37%), Positives = 204/383 (53%), Gaps = 27/383 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 118 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 173 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 288 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 + W+ + E FKC K R Q+ V VQ D+ V + ++ + GQA V Sbjct: 289 VGWVSNKAKEKE----FKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 344 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 FY D LGG I RS Sbjct: 345 FYDGD----ECLGGATIDEVYRS 363 >gi|315604614|ref|ZP_07879677.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313626|gb|EFU61680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] Length = 363 Score = 222 bits (565), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 147/378 (38%), Positives = 206/378 (54%), Gaps = 25/378 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ A+SGGVDS+V AA G+DV+GV + L +S+ R GS CC+ +D DA R Sbjct: 1 MRVLAALSGGVDSAVAAAKAVEAGHDVVGVHMAL-SSQPQECRIGSRGCCSIEDAGDAAR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 I + YV+D + F VI F + Y AG TP PCV CN VKF +L S R LG Sbjct: 60 AAQIIGIPFYVWDLAQEFEQTVITDFVAQYKAGRTPNPCVRCNEFVKFRELASRARALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197 D + TGHY + + G G + R D +DQSY L ++L + PLG K Sbjct: 120 DAVCTGHY--AAIVDGPSGPE---LHRGADALKDQSYVLAVMGPEELARVVLPLGQAPSK 174 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR A +GL +++K DS DICF+ G + R + G A EG+IV +G++LGRH Sbjct: 175 AWVRSEAERLGLGVSNKPDSYDICFIPDGDTQGFL-RAHLG-ASEGEIVTPDGEVLGRHE 232 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G NYT+GQR+GLG+ G P +V+ +++V+VGP E L + RI+ WL Sbjct: 233 GYWNYTVGQRKGLGIGAPAPDGRPRYVLETRPETNQVVVGPSELLSISRIHATNAVWLAS 292 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVD--FEKSEVGVASGQACVFYTS 370 +DA + FV++R+ P+PV + R++ +D E GVA GQ+ V Y Sbjct: 293 ---DDAGNEPADLFVQLRAHGAPIPVAELVRDEASATIDVVLEDGARGVARGQSMVIYRG 349 Query: 371 DSNEARVLGGGIISGSKR 388 +RVLG G I ++R Sbjct: 350 ----SRVLGEGTIGRTER 363 >gi|218289827|ref|ZP_03494027.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alicyclobacillus acidocaldarius LAA1] gi|218240118|gb|EED07303.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alicyclobacillus acidocaldarius LAA1] Length = 365 Score = 222 bits (565), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 141/374 (37%), Positives = 206/374 (55%), Gaps = 18/374 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK+ GYDVIGV ++ ++ + G+C A QD D RRVC+ Sbjct: 4 RVVVGMSGGVDSSVTALLLKQAGYDVIGVFMKNWDE---TDENGACTAEQDFEDVRRVCE 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E + V F + G TP P V CNR +KF +LL+ LGAD L Sbjct: 61 QIGIPYYGVNFEREYEERVFQHFLEEFRRGRTPNPDVLCNREIKFKELLACALDLGADYL 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + R +DG + R D +DQ+YFL TQ L FP+G + K VR Sbjct: 121 ATGHYAQVRQL--EDGS--VALVRGRDKNKDQTYFLHMLTQAPLRRAMFPIGHLTKPEVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +AR+ GL +A K DS ICF+ + + +++ A G I ++G++LG H+G++ Sbjct: 177 QIARDHGLHVAQKKDSTGICFIGERNFRAFLQQYLP--AQPGLIEDVDGRVLGEHDGLMY 234 Query: 262 YTIGQRRGL---GVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW-LGDGLFE 317 YTIGQR+GL G+ +P +DK+ +R ++ + + R+Y R ++ + E Sbjct: 235 YTIGQRKGLRLGGLPGRDPAPWFVVDKDLARNVLVVAQGHDHPRLYSRALSADTVSFVAE 294 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + F+C K R QD PV V+ +D V F++ + + GQ+ VFY D Sbjct: 295 RPPAERFRCTAKFRYRQDDQPVKVEMTGEDTCRVIFDEPQRAITPGQSVVFYDGDI---- 350 Query: 377 VLGGGIISGSKRSD 390 LGGGII+ + D Sbjct: 351 CLGGGIIASREPVD 364 >gi|228910232|ref|ZP_04074050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis IBL 200] gi|228849396|gb|EEM94232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis IBL 200] Length = 376 Score = 222 bits (565), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 142/383 (37%), Positives = 204/383 (53%), Gaps = 27/383 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 6 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 + W+ + E FKC K R Q+ V VQ D+ V + ++ + GQA V Sbjct: 294 VGWVSNKAKETE----FKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 349 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 FY D LGG I RS Sbjct: 350 FYDGD----ECLGGATIDEVYRS 368 >gi|225016206|ref|ZP_03705398.1| hypothetical protein CLOSTMETH_00109 [Clostridium methylpentosum DSM 5476] gi|224951028|gb|EEG32237.1| hypothetical protein CLOSTMETH_00109 [Clostridium methylpentosum DSM 5476] Length = 352 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 123/364 (33%), Positives = 194/364 (53%), Gaps = 14/364 (3%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK-ASKRKGSCCAGQDVYDARRVCDT 82 ++ MSGGVDSSV AALL GY+V+G T +L+ + +CC+ D+ DAR VC Sbjct: 1 MIGMSGGVDSSVAAALLIEQGYEVVGATFRLWKPEDDLFDSEATCCSLDDINDAREVCHQ 60 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + HYV + + F+ AV+ F Y AG TP PC+ CN+ +KF LG D +A Sbjct: 61 LGIPHYVLNLKREFKEAVVQNFVEEYQAGRTPNPCIVCNQKIKFDYFYQKAAALGFDYVA 120 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY +R+ + G+ + + ++DQSYFL+ L + FPLG K VR+ Sbjct: 121 TGHY--ARIEQNEQGEFQ--LKTAAYAQKDQSYFLYGIPYPNLGHILFPLGGYTKPQVRE 176 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA + G ++ K DSQ+ICFV + Y ++R I +G+ + G +LG H GI +Y Sbjct: 177 LAEKYGFSVSHKRDSQEICFVDRNGYGTFLERFTGTIPPKGNFIDSQGTVLGEHKGIWHY 236 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 T+GQR+GLG+A G+P++V ++ + V + E R+ +N+ L Sbjct: 237 TVGQRKGLGMAFGKPMYVSEINPADNTVRLVDDEENYSSRLTAERMNY----LIPHPPSK 292 Query: 323 GFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + VKIR+ + P + ++ + + F++ + + GQ+ V Y + LGGG Sbjct: 293 PVRVQVKIRNRAEFAPALLTPLSEAKIELAFDQPQRAITKGQSAVLYDGEV----CLGGG 348 Query: 382 IISG 385 II+ Sbjct: 349 IITA 352 >gi|124023662|ref|YP_001017969.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str. MIT 9303] gi|123963948|gb|ABM78704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus str. MIT 9303] Length = 431 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 141/391 (36%), Positives = 207/391 (52%), Gaps = 46/391 (11%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P + RV V +SGGVDSS+ AALL G+ V G+TL L + KG+CC+ + DA Sbjct: 54 PGEQRVAVGLSGGVDSSLSAALLVEAGWQVEGLTLWLMSG------KGACCS-DGLIDAA 106 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT---R 134 +C+ + + H+V D F+ ++ Y G TPLPC CNR+VKF+ +LS R Sbjct: 107 GICEQLKIPHHVVDSRATFQAEIVDQLVQGYQQGVTPLPCSRCNRSVKFAAMLSWAEKER 166 Query: 135 QLGADVLATGHYIRSR---------LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 QL +ATGHY R R GD R +++ R +D +DQSYFL+ +Q L Sbjct: 167 QL--HRVATGHYARIRHREDPEPQQALPGDSSGRHQLL-RGLDQNKDQSYFLYDLSQDVL 223 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI--NAGIALEG 243 + FPLG++ K R A GL A K++SQD+C ++ +K N A +G Sbjct: 224 AKVIFPLGELTKAETRQEAERYGLRTAKKAESQDLCL---ADHYGSMKAFLDNYLPARQG 280 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 +IV +G+++G H+GI ++TIGQR+GLGVA EPL VV LD ++RVIV PR Sbjct: 281 EIVLQDGKVVGEHDGIEHFTIGQRKGLGVAWREPLHVVQLDATANRVIVAPRAEAGRDSC 340 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP---VFVQRNDDGVYVD--------F 352 + +NW+ A+ V++R PV + ++ + + D F Sbjct: 341 VVGAVNWISIAPPSSAI----DVEVQVRYRSGPVAAQLIPIEATAEDIAADRPHRCRLTF 396 Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGII 383 + + + GQA VFY +D+ VLGGG+I Sbjct: 397 NEEQFSITPGQAAVFYAADA----VLGGGLI 423 >gi|119717667|ref|YP_924632.1| tRNA-specific 2-thiouridylase MnmA [Nocardioides sp. JS614] gi|205816899|sp|A1SMB0|MNMA_NOCSJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|119538328|gb|ABL82945.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nocardioides sp. JS614] Length = 366 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 150/377 (39%), Positives = 201/377 (53%), Gaps = 24/377 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV G+ L L + + S R G+ CC +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAAEAGHDVTGIHLALSRNPQ-SYRSGARGCCTIEDSNDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D I + YV+D +RF V+ F + YAAG TP PC+ CN +KF+ +L LG Sbjct: 60 AADVIGIPFYVWDLSDRFHEDVVEDFMAEYAAGRTPNPCLRCNEKIKFAAVLDRALGLGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY +RL G DG M R +D +DQSY L Q QL FPLG K+ Sbjct: 120 DAVATGHY--ARLVAGADGLVE--MHRAVDHGKDQSYVLGVLDQGQLRHSLFPLGGSTKD 175 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI--NAGIALEGDIVHLN-GQILGR 255 VR A E GL +ADK DS DICF+ G ++ + EG IV + G++LGR Sbjct: 176 EVRREAAERGLLVADKPDSHDICFIADGDNAGWLREKLGDRAPHHEGTIVDDDTGEVLGR 235 Query: 256 HNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 H G +TIGQR+GL + G P FV+ ++ S V VGP E L VHR+ W Sbjct: 236 HEGSYGFTIGQRKGLRIGRPAPDGRPRFVLDIEPVSGTVTVGPHERLAVHRLRGIRPRWC 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 G V D V++R+ + + R+ D V ++ + G+A GQA V Y Sbjct: 296 G------TVPDRLSGTVQLRAHGEEHRAVLVRDGDEVDIELLEPAYGIAPGQAAVLY--- 346 Query: 372 SNEARVLGGGIISGSKR 388 + +RV+G IS + R Sbjct: 347 -DGSRVVGSATISATDR 362 >gi|205822245|sp|A2CB44|MNMA_PROM3 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 409 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 141/391 (36%), Positives = 207/391 (52%), Gaps = 46/391 (11%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P + RV V +SGGVDSS+ AALL G+ V G+TL L + KG+CC+ + DA Sbjct: 32 PGEQRVAVGLSGGVDSSLSAALLVEAGWQVEGLTLWLMSG------KGACCS-DGLIDAA 84 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT---R 134 +C+ + + H+V D F+ ++ Y G TPLPC CNR+VKF+ +LS R Sbjct: 85 GICEQLKIPHHVVDSRATFQAEIVDQLVQGYQQGVTPLPCSRCNRSVKFAAMLSWAEKER 144 Query: 135 QLGADVLATGHYIRSR---------LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 QL +ATGHY R R GD R +++ R +D +DQSYFL+ +Q L Sbjct: 145 QL--HRVATGHYARIRHREDPEPQQALPGDSSGRHQLL-RGLDQNKDQSYFLYDLSQDVL 201 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI--NAGIALEG 243 + FPLG++ K R A GL A K++SQD+C ++ +K N A +G Sbjct: 202 AKVIFPLGELTKAETRQEAERYGLRTAKKAESQDLCL---ADHYGSMKAFLDNYLPARQG 258 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 +IV +G+++G H+GI ++TIGQR+GLGVA EPL VV LD ++RVIV PR Sbjct: 259 EIVLQDGKVVGEHDGIEHFTIGQRKGLGVAWREPLHVVQLDATANRVIVAPRAEAGRDSC 318 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP---VFVQRNDDGVYVD--------F 352 + +NW+ A+ V++R PV + ++ + + D F Sbjct: 319 VVGAVNWISIAPPSSAI----DVEVQVRYRSGPVAAQLIPIEATAEDIAADRPHRCRLTF 374 Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGII 383 + + + GQA VFY +D+ VLGGG+I Sbjct: 375 NEEQFSITPGQAAVFYAADA----VLGGGLI 401 >gi|229175070|ref|ZP_04302588.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus MM3] gi|228608438|gb|EEK65742.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus MM3] Length = 376 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 143/383 (37%), Positives = 205/383 (53%), Gaps = 27/383 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P++ RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 6 MNKLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A E GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 178 ELKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366 I W+ + +A FKC K R Q+ V VQ D + V + ++ + GQA V Sbjct: 294 IGWVSN----EAKEKEFKCTAKFRYRQEDNKVTVQIVDGNTVRILCDEPIRAITPGQAVV 349 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 FY D LGG I RS Sbjct: 350 FYDGD----ECLGGATIDEVYRS 368 >gi|229163345|ref|ZP_04291297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus R309803] gi|228620126|gb|EEK77000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus R309803] Length = 372 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 141/379 (37%), Positives = 203/379 (53%), Gaps = 19/379 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P++ RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 2 MNKLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 59 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 119 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 174 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 231 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E+ Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 289 Query: 313 DGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 G + + FKC K R Q V VQ D+ V + ++ + GQA VFY Sbjct: 290 VGWVSNKAKEAEFKCTAKFRYRQADNKVTVQIVDENTVRILCDEPIRAITPGQAVVFYDG 349 Query: 371 DSNEARVLGGGIISGSKRS 389 D LGG I RS Sbjct: 350 D----ECLGGATIDEVYRS 364 >gi|73919895|sp|Q812R6|MNMA_BACCR RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 371 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 142/383 (37%), Positives = 204/383 (53%), Gaps = 27/383 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 118 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 173 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 288 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 + W+ + E FKC K R Q+ V VQ D+ V + ++ + GQA V Sbjct: 289 VGWVSNKEKETE----FKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 344 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 FY D LGG I RS Sbjct: 345 FYDGD----ECLGGATIDEVYRS 363 >gi|229198523|ref|ZP_04325227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus m1293] gi|228585026|gb|EEK43140.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus m1293] Length = 376 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 142/383 (37%), Positives = 204/383 (53%), Gaps = 27/383 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 6 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 178 ELKKPQIREMAKEAGLVTAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 + W+ + E FKC K R Q+ V VQ D+ V + ++ + GQA V Sbjct: 294 VGWVSNKAKEKE----FKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 349 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 FY D LGG I RS Sbjct: 350 FYDGD----ECLGGATIDEVYRS 368 >gi|30022472|ref|NP_834103.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus ATCC 14579] gi|206969454|ref|ZP_03230408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH1134] gi|296504889|ref|YP_003666589.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis BMB171] gi|29898030|gb|AAP11304.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Bacillus cereus ATCC 14579] gi|206735142|gb|EDZ52310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH1134] gi|296325941|gb|ADH08869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis BMB171] gi|326942178|gb|AEA18074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar chinensis CT-43] Length = 372 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 142/383 (37%), Positives = 204/383 (53%), Gaps = 27/383 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 2 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 59 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 119 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 174 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 231 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 289 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 + W+ + E FKC K R Q+ V VQ D+ V + ++ + GQA V Sbjct: 290 VGWVSNKEKETE----FKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 345 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 FY D LGG I RS Sbjct: 346 FYDGD----ECLGGATIDEVYRS 364 >gi|161350046|ref|NP_894177.2| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str. MIT 9313] gi|205822220|sp|Q7TTR0|MNMA_PROMM RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 409 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 139/389 (35%), Positives = 204/389 (52%), Gaps = 42/389 (10%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P + RV V +SGGVDSS+ AALL G+ V G+TL L + KG+CC+ + DA Sbjct: 32 PGEQRVAVGLSGGVDSSLSAALLVEAGWQVEGLTLWLMSG------KGACCS-DGLIDAA 84 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQL 136 +C+ + + H+V D F+ ++ Y G TPLPC CNR+VKF+++LS ++L Sbjct: 85 GICEQLKIPHHVVDSRATFQAEIVDQLVQGYQQGVTPLPCSRCNRSVKFAEMLSWAKKEL 144 Query: 137 GADVLATGHYIRSR---------LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 +ATGHY R R GD R +++ R +D +DQSYFL+ +Q L Sbjct: 145 QLHRVATGHYARIRHREDPEPQQALPGDSIGRHQLL-RGLDQNKDQSYFLYDLSQDVLAK 203 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI--NAGIALEGDI 245 + FPLG++ K R A GL A K +SQD+C ++ +K N A +G+I Sbjct: 204 VIFPLGELTKAETRQEAERYGLRTAKKEESQDLCL---ADHYGSMKAFLDNYLPARQGEI 260 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 V +G+++G H+GI ++TIGQR+GLGVA EPL VV LD ++RVIV PR + Sbjct: 261 VLQDGKVVGEHDGIEHFTIGQRKGLGVAWREPLHVVQLDAAANRVIVAPRAEAGRDNCVV 320 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPV-----PVFVQRNDDGV------YVDFEK 354 +NW+ + V++R PV P+ D + F + Sbjct: 321 GAVNWISMAPPSTTI----NVEVQVRYRSGPVAAQLTPIEATAEDIAADRPHRCRLTFNE 376 Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGII 383 + + GQA VFY +D+ VLGGG+I Sbjct: 377 KQFSITPGQAAVFYAADT----VLGGGLI 401 >gi|78212421|ref|YP_381200.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. CC9605] gi|123578503|sp|Q3AL87|MNMA_SYNSC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|78196880|gb|ABB34645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. CC9605] Length = 383 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 138/395 (34%), Positives = 209/395 (52%), Gaps = 28/395 (7%) Query: 2 VVSEATRLNSLDLDK---NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR 58 V S TR L++ P + RV + +SGGVDSS+ AALL G++V G+TL L + Sbjct: 3 VGSTTTRAGEAALERLRQWPGEHRVAIGLSGGVDSSLTAALLVEAGWEVEGLTLWLMSG- 61 Query: 59 KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118 KG+CCA + + DA +C+ + + H+V D E F+ ++ Y G TPLPC Sbjct: 62 -----KGACCA-EGLVDAAGICEQLGIPHHVVDMRETFQQEIVQRLVDGYRDGITPLPCS 115 Query: 119 DCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177 CNR+VKF +L Q +ATGHY R R + GD G+ + + R +D +DQSYFL Sbjct: 116 QCNRSVKFGPMLDWALQERKLPRIATGHYARIR-HGGDRGRHQ--LLRGLDTRKDQSYFL 172 Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA 237 + Q+ L + FPLG++ K R A GL A+K +SQD+C + + ++A Sbjct: 173 YDLPQEVLGRIVFPLGELTKPDTRLEAARHGLRTAEKPESQDLCLADH--HGSMRAFLDA 230 Query: 238 GIAL-EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE 296 + +G+IV +G ++G H+GI ++T+GQR+GLGVA GEPL V+ LD +RV+V PR Sbjct: 231 YLPPRQGEIVLADGTVVGEHDGIEHFTVGQRKGLGVAWGEPLHVIRLDAAMNRVVVAPRA 290 Query: 297 SLEVHRIYLREINWLGDGLFEDAVVDGFKC---FVKIRSSQDPVPVF----VQRNDDGVY 349 + +NW+ E + +R+ P+P + Sbjct: 291 EAGRDSCVVGAVNWVSIDPIEAPRTVEVQVRYRSTPVRAELSPLPAIEADQQRERPHRCR 350 Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + FE+ + + GQA VFY ++ VLGGG+I Sbjct: 351 LSFEEEQFSITPGQAAVFYDGET----VLGGGLIQ 381 >gi|228923148|ref|ZP_04086439.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228941564|ref|ZP_04104113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954681|ref|ZP_04116704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960668|ref|ZP_04122313.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228974494|ref|ZP_04135061.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981088|ref|ZP_04141389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis Bt407] gi|229048104|ref|ZP_04193677.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH676] gi|229071905|ref|ZP_04205116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus F65185] gi|229081661|ref|ZP_04214156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Rock4-2] gi|229111869|ref|ZP_04241415.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Rock1-15] gi|229129677|ref|ZP_04258645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus BDRD-Cer4] gi|229146967|ref|ZP_04275331.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus BDRD-ST24] gi|229152600|ref|ZP_04280789.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus m1550] gi|229180672|ref|ZP_04308012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus 172560W] gi|229192608|ref|ZP_04319569.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus ATCC 10876] gi|228590915|gb|EEK48773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus ATCC 10876] gi|228602817|gb|EEK60298.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus 172560W] gi|228630861|gb|EEK87501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus m1550] gi|228636566|gb|EEK93032.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus BDRD-ST24] gi|228653794|gb|EEL09664.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus BDRD-Cer4] gi|228671625|gb|EEL26923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Rock1-15] gi|228701665|gb|EEL54156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Rock4-2] gi|228711201|gb|EEL63165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus F65185] gi|228723259|gb|EEL74631.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH676] gi|228778629|gb|EEM26895.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis Bt407] gi|228785211|gb|EEM33223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228799032|gb|EEM46004.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805008|gb|EEM51604.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228818120|gb|EEM64196.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228836527|gb|EEM81877.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 376 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 142/383 (37%), Positives = 204/383 (53%), Gaps = 27/383 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 6 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 + W+ + E FKC K R Q+ V VQ D+ V + ++ + GQA V Sbjct: 294 VGWVSNKEKETE----FKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 349 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 FY D LGG I RS Sbjct: 350 FYDGD----ECLGGATIDEVYRS 368 >gi|297559139|ref|YP_003678113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843587|gb|ADH65607.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 362 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 147/379 (38%), Positives = 201/379 (53%), Gaps = 29/379 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 +RV+ AMSGGVDS+V AA + G+DV GV L L + + S R G+ CC +D +DARR Sbjct: 3 LRVLAAMSGGVDSAVAAARVAEAGHDVTGVHLALSKNPQ-SYRTGARGCCTVEDSHDARR 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D I + YV+D E F V+ F + Y AG TP PC+ CN +KF +L LG Sbjct: 62 AADVIGIPFYVWDMSEEFDREVVQDFVAEYEAGNTPNPCLRCNEKIKFEAVLDRAVALGF 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGH++R DG+ + R +D +DQSY L +QL FPLGD K+ Sbjct: 122 DAVATGHHVRKV-----DGR----LVRSVDAAKDQSYVLGVLNAEQLERAVFPLGDCTKD 172 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNGQILGRHN 257 VR A GL +ADK DS DICF+ G D +N I G I +G ++G HN Sbjct: 173 EVRAEAERRGLSVADKPDSHDICFIADG---DTAGFLNRRIGERPGPIRDEDGTVVGTHN 229 Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G +T+GQR+GLG+ P +V+ ++ + V VGPR SL V I W G Sbjct: 230 GSHTFTVGQRKGLGLGGAAHPRYVLSIEPVDNSVTVGPRASLRVDAITGVRPVWSG---- 285 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDG---VYVDFEKSEVGVASGQACVFYTSDS 372 + + + C V++R+ + P V QR DG + V + GVA+GQA V Y D+ Sbjct: 286 SEPLTEPTDCHVQLRAHGEVYPASVWQREADGGPELVVRLAEPATGVATGQAVVVYQGDT 345 Query: 373 NEARVLGGGIISGSKRSDA 391 VLG IS + R+ A Sbjct: 346 ----VLGSATISATSRTGA 360 >gi|87125503|ref|ZP_01081348.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. RS9917] gi|86166803|gb|EAQ68065.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. RS9917] Length = 583 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 141/393 (35%), Positives = 207/393 (52%), Gaps = 27/393 (6%) Query: 3 VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62 V+EA +L P + RV V +SGGVDSS+ AALL G+ V G+TL L + Sbjct: 194 VTEAGHQALANLRHWPGEHRVAVGLSGGVDSSLTAALLVEAGWQVEGLTLWLMSG----- 248 Query: 63 RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122 KG+CCA + + DA +CD + + H+V D+ F+ ++ Y G TPLPC CNR Sbjct: 249 -KGACCA-EGLVDAAGICDQLGIPHHVVDFRAHFKEQIVDFLVQGYGEGITPLPCSRCNR 306 Query: 123 TVKFSDLLS-VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181 VKF +L + G + +ATGHY R R D +++ R D +DQSYFL+ Sbjct: 307 EVKFGPMLQWALDERGIERIATGHYARIRHGAQSDNGCHQLL-RGCDSHKDQSYFLYDLP 365 Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 Q+ L L FPLG++ K R A GL A K++SQD+C + + ++ +A Sbjct: 366 QEALGRLVFPLGELTKSDTRLEAARHGLRTAKKTESQDLCLADH--HGSMRAFLDTYLAP 423 Query: 242 -EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300 +G+IV +G ++G H+GI ++TIGQR+GLGVA EPL VV LD +RV+V PR Sbjct: 424 RQGEIVLRDGTVVGEHDGIEHFTIGQRKGLGVAWSEPLHVVQLDGALNRVVVAPRRDAAR 483 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRS---SQDPVPVFVQRNDDGV------YVD 351 + +NW+ + E + V+ RS + P+ Q D +D Sbjct: 484 AGAVVGAVNWV--SIPEPQHPIEVEVQVRYRSGAVAARLTPLPAQEADAAADRPHRCRLD 541 Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F + + + GQA VFY+ + R+LGGG+I Sbjct: 542 FAEPQFSITPGQAAVFYSGE----RLLGGGLIQ 570 >gi|33634533|emb|CAE20519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus str. MIT 9313] Length = 431 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 139/389 (35%), Positives = 204/389 (52%), Gaps = 42/389 (10%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P + RV V +SGGVDSS+ AALL G+ V G+TL L + KG+CC+ + DA Sbjct: 54 PGEQRVAVGLSGGVDSSLSAALLVEAGWQVEGLTLWLMSG------KGACCS-DGLIDAA 106 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQL 136 +C+ + + H+V D F+ ++ Y G TPLPC CNR+VKF+++LS ++L Sbjct: 107 GICEQLKIPHHVVDSRATFQAEIVDQLVQGYQQGVTPLPCSRCNRSVKFAEMLSWAKKEL 166 Query: 137 GADVLATGHYIRSR---------LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 +ATGHY R R GD R +++ R +D +DQSYFL+ +Q L Sbjct: 167 QLHRVATGHYARIRHREDPEPQQALPGDSIGRHQLL-RGLDQNKDQSYFLYDLSQDVLAK 225 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI--NAGIALEGDI 245 + FPLG++ K R A GL A K +SQD+C ++ +K N A +G+I Sbjct: 226 VIFPLGELTKAETRQEAERYGLRTAKKEESQDLCL---ADHYGSMKAFLDNYLPARQGEI 282 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 V +G+++G H+GI ++TIGQR+GLGVA EPL VV LD ++RVIV PR + Sbjct: 283 VLQDGKVVGEHDGIEHFTIGQRKGLGVAWREPLHVVQLDAAANRVIVAPRAEAGRDNCVV 342 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPV-----PVFVQRNDDGV------YVDFEK 354 +NW+ + V++R PV P+ D + F + Sbjct: 343 GAVNWISMAPPSTTI----NVEVQVRYRSGPVAAQLTPIEATAEDIAADRPHRCRLTFNE 398 Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGII 383 + + GQA VFY +D+ VLGGG+I Sbjct: 399 KQFSITPGQAAVFYAADT----VLGGGLI 423 >gi|15806762|ref|NP_295482.1| tRNA-specific 2-thiouridylase MnmA [Deinococcus radiodurans R1] gi|6459532|gb|AAF11314.1|AE002017_5 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Deinococcus radiodurans R1] Length = 413 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 137/370 (37%), Positives = 204/370 (55%), Gaps = 19/370 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+ AMSGGVDSSV A+LLK GY VIG ++ + K + SCC+ Y+ARRV + Sbjct: 54 RVLCAMSGGVDSSVTASLLKEQGYQVIGAMMRFWPDDKRTDTFDSCCSPDAAYEARRVAE 113 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + V Y+ DY E F+ ++ PF YA G TP PCV+CN VKF +L+ + LG + Sbjct: 114 QVGVPFYLLDYREPFQRHIVGPFLEEYARGRTPNPCVNCNTKVKFDELVKKAKMLGCRYV 173 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY++ D+ + R D +DQ+YFL+ T + L + FP+G+++K VR Sbjct: 174 ATGHYVKRV----DNAQGEVEFHRGDDPRKDQTYFLWGTPRDALPYILFPVGELEKPQVR 229 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRHNGII 260 ++A E GL A K +SQ+ICFV GK D V + + +I G+++G H G Sbjct: 230 EIAAERGLLTAQKPESQNICFV-PGKVQDFVAEHLPQAQGYIREIA--TGEVVGEHLGTQ 286 Query: 261 NYTIGQRRGLGVAMGEPL-FVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YT+GQ++GLG+ + VV+LD +S+ V VG + + + N+L D L E Sbjct: 287 FYTLGQKKGLGLYQSHRVRHVVHLDPDSNTVWVGDYDDCLWTGLKATDANYLLD-LAELP 345 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + V++R PV V D +G ++F + + VA GQ+ V Y +R+L Sbjct: 346 T----ELEVQVRYRTAPVKAHVLHADAEGFELEFAEPQFAVAPGQSAVLYAG----SRLL 397 Query: 379 GGGIISGSKR 388 GGG+I+ R Sbjct: 398 GGGLIADHAR 407 >gi|253574914|ref|ZP_04852254.1| tRNA methyl transferase [Paenibacillus sp. oral taxon 786 str. D14] gi|251845960|gb|EES73968.1| tRNA methyl transferase [Paenibacillus sp. oral taxon 786 str. D14] Length = 378 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 141/381 (37%), Positives = 210/381 (55%), Gaps = 26/381 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K + RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A D Sbjct: 2 MAKPNSETRVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDD---TDEFGYCTAEADA 58 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RRVC+ I++ +Y ++E+++ + V F Y G TP P V CNR +KF + L+ Sbjct: 59 EDVRRVCEQIDIPYYTVNFEKQYYDKVFAYFLEEYKRGRTPNPDVMCNREIKFGEFLNKA 118 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R V ++ K +++ R +D +DQ+YFL A Q+QL FP+G Sbjct: 119 LDLGADYVATGHYAR----VVEENKTYKLL-RGVDSNKDQTYFLNALNQEQLSKAMFPIG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252 + K VR +A E GL A K DS +CF+ + + + + N A GD++ + G++ Sbjct: 174 HLPKPEVRRIAEEAGLYTAKKKDSTGVCFIGERNFKEFLS--NYLPAQSGDMIDIVTGEV 231 Query: 253 LGRHNGIINYTIGQRR---GLGVAMGEPLFVV--YLDKNSSRVIVGPRE-SLEVHRIYLR 306 GRH+G++ YT+GQR+ G GEP FV L++N V+ G + SL + Sbjct: 232 KGRHDGLMYYTLGQRQGLGIGGSGTGEPWFVADKDLERNILYVVQGDKHPSLYSTSLIAS 291 Query: 307 EINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364 +NW+ D + +G +KC K R Q V + + DG V+V F++ + + GQA Sbjct: 292 GVNWIAGA---DKMPEGPYKCTAKFRYRQPDQGVTLTKQPDGTVHVAFDEPQKAITPGQA 348 Query: 365 CVFYTSDSNEARVLGGGIISG 385 VFY + LGGG I Sbjct: 349 VVFYQGE----ECLGGGTIEA 365 >gi|325283230|ref|YP_004255771.1| tRNA-specific 2-thiouridylase mnmA [Deinococcus proteolyticus MRP] gi|324315039|gb|ADY26154.1| tRNA-specific 2-thiouridylase mnmA [Deinococcus proteolyticus MRP] Length = 422 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 139/365 (38%), Positives = 205/365 (56%), Gaps = 19/365 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+ AMSGGVDSSV AALLK GY V+G ++ + K ++ SCC+ Y+ARRV + Sbjct: 61 RVLCAMSGGVDSSVTAALLKDQGYSVVGAMMRFWPDDKRTETFDSCCSPDAAYEARRVAE 120 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + V Y+ DY E+F+ ++ PF YA G TP PCV+CN VKF +L+ + LG + Sbjct: 121 QVGVPFYLLDYREQFQQHIVGPFIEEYAKGRTPNPCVNCNTKVKFDELVKKAKMLGCQYV 180 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY++ V + G+ R D +DQ+YFL+ T ++ L + FP+G+++K VR Sbjct: 181 ATGHYVKR--VVNERGEVE--FWRGDDPRKDQTYFLWGTPREALPYILFPVGELEKPRVR 236 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGII 260 ++A E GL A K +SQ+ICFV GK D V + +G I + G+I+G H G Sbjct: 237 EIAAERGLLTASKPESQNICFV-PGKVQDFVAEHLPQV--QGHIREIRTGEIVGEHLGTQ 293 Query: 261 NYTIGQRRGLGVAMGEPL-FVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YT+GQ++GLG+ + VV+LD + V VG E + + N+L D L E Sbjct: 294 FYTLGQKKGLGLYQTHRVRHVVHLDPATQTVWVGDYEDCLWDDLSASQANYLVD-LAELP 352 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + V++R PV V D+ G + F++ + VA GQ+ V Y + R+L Sbjct: 353 Q----RLQVQVRYRTAPVGATVLHADEHGFRLRFDEPQFAVAPGQSAVLY----DGPRLL 404 Query: 379 GGGII 383 GGG+I Sbjct: 405 GGGLI 409 >gi|320096111|ref|ZP_08027710.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] gi|319976950|gb|EFW08694.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] Length = 515 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 153/388 (39%), Positives = 205/388 (52%), Gaps = 27/388 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ A+SGGVDS+V AA G+DV+GV + L +S+ A R GS CC+ +D DA R Sbjct: 142 MRVLAALSGGVDSAVAAAKAVEAGHDVVGVHMAL-SSQPAQCRIGSRGCCSVEDAGDAAR 200 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 +TI + YV+D E F VI F + Y AG TP PCV CN VKF +L R LG Sbjct: 201 AAETIGIPFYVWDLAEEFEQTVITDFIAQYRAGRTPNPCVRCNEFVKFRELADRARALGF 260 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197 D + TGHY + + G+ G + R D +DQSY L +L + PLG K Sbjct: 261 DAVCTGHY--AAIVEGEQGPE---LHRGADAAKDQSYVLAVMGPDELRRVVLPLGGAPSK 315 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR A +GL ++DK DS DICF+ G + R + G A EG+IV +G++LGRH Sbjct: 316 AWVRAEAERLGLGVSDKPDSYDICFIPDGDTQGFL-RAHLGSA-EGEIVTPDGRVLGRHG 373 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G NYT+GQR+GLG+ G P +V+ +++V+VG E L V RI + WL Sbjct: 374 GYWNYTVGQRKGLGIGAPAPDGRPRYVLETRPETNQVVVGASELLTVDRIECSDAVWLAP 433 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPV--FVQRNDDGV----YVDFEKSEVGVASGQACVF 367 DA G + + R+ P+PV V+R G V + GVA GQ+ V Sbjct: 434 DDPGDAASGGL--YAQFRAHGRPLPVASLVRRAPGGAGARFVVGLAEGARGVARGQSLVV 491 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEES 395 Y D RVLG G I + R+ A S Sbjct: 492 YRGD----RVLGEGTIDATSRAGAALAS 515 >gi|331006794|ref|ZP_08330060.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma proteobacterium IMCC1989] gi|330419412|gb|EGG93812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma proteobacterium IMCC1989] Length = 426 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 213/379 (56%), Gaps = 26/379 (6%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P++ RV+V MSGGVDSSV A LL++ GY V G+ ++ ++ ++ C A D+ DA+ Sbjct: 58 PQETRVMVGMSGGVDSSVTALLLQQQGYLVEGLFMKNWDEDDGTEY---CSAKDDLADAQ 114 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RVCDT+ ++ + ++ + + V F Y AG TP P + CNR +KF L + LG Sbjct: 115 RVCDTLGITLHTANFAAEYWDNVFEYFLDEYKAGRTPNPDILCNREIKFKVFLDYAQVLG 174 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD++ATGHY+R Y + R++ + D +DQSYFL A +QL FP+G+++K Sbjct: 175 ADMIATGHYVRRDDYFNNSAGSTRLL-KGCDNNKDQSYFLHAVGGEQLAKTLFPVGELEK 233 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 +VR LA + L +K DS ICF+ + ++ D +++ A EG+IV GQ++G+H Sbjct: 234 PAVRLLAEQHNLITHNKKDSTGICFIGERRFKDFLEQYLP--AQEGEIVTDKGQVIGKHA 291 Query: 258 GIINYTIGQRRGLGV-----AMGEPLFVV--YLDKNSSRVIVGPRESLEVH-RIYLREIN 309 G++ +T+GQR+GLG+ A P +VV LDKN V+ G + L H R+ +++ Sbjct: 292 GLMYHTMGQRQGLGIGGVKNAPDAPWYVVDKDLDKNQLIVVQGDQHPLLYHQRLTATDMH 351 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQD----PVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 W+ +DAV F+C KIR Q V V ND + V F++ + V GQ+ Sbjct: 352 WINPS-DQDAV---FRCHAKIRYRQADQACEVTVSRDNNDSSISVIFDEPQRAVTPGQSI 407 Query: 366 VFYTSDSNEARVLGGGIIS 384 V Y + LGG +I+ Sbjct: 408 VLYDGE----HCLGGAVIA 422 >gi|196034345|ref|ZP_03101754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus W] gi|195992887|gb|EDX56846.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus W] Length = 372 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 141/383 (36%), Positives = 205/383 (53%), Gaps = 27/383 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 2 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 59 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 119 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A++ GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 174 ELKKPQIREMAKKAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 231 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 289 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 + W+ + +A FKC K R Q+ V VQ D+ V + ++ + GQA V Sbjct: 290 VGWVSN----EAKEKEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVV 345 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 FY D LGG I RS Sbjct: 346 FYDGD----ECLGGATIDEVYRS 364 >gi|14195297|sp|Q9RTK1|MNMA_DEIRA RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 380 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 137/371 (36%), Positives = 204/371 (54%), Gaps = 19/371 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+ AMSGGVDSSV A+LLK GY VIG ++ + K + SCC+ Y+ARRV + Sbjct: 21 RVLCAMSGGVDSSVTASLLKEQGYQVIGAMMRFWPDDKRTDTFDSCCSPDAAYEARRVAE 80 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + V Y+ DY E F+ ++ PF YA G TP PCV+CN VKF +L+ + LG + Sbjct: 81 QVGVPFYLLDYREPFQRHIVGPFLEEYARGRTPNPCVNCNTKVKFDELVKKAKMLGCRYV 140 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY++ D+ + R D +DQ+YFL+ T + L + FP+G+++K VR Sbjct: 141 ATGHYVKRV----DNAQGEVEFHRGDDPRKDQTYFLWGTPRDALPYILFPVGELEKPQVR 196 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRHNGII 260 ++A E GL A K +SQ+ICFV GK D V + + +I G+++G H G Sbjct: 197 EIAAERGLLTAQKPESQNICFV-PGKVQDFVAEHLPQAQGYIREIA--TGEVVGEHLGTQ 253 Query: 261 NYTIGQRRGLGVAMGEPL-FVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YT+GQ++GLG+ + VV+LD +S+ V VG + + + N+L D L E Sbjct: 254 FYTLGQKKGLGLYQSHRVRHVVHLDPDSNTVWVGDYDDCLWTGLKATDANYLLD-LAELP 312 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + V++R PV V D +G ++F + + VA GQ+ V Y +R+L Sbjct: 313 T----ELEVQVRYRTAPVKAHVLHADAEGFELEFAEPQFAVAPGQSAVLYAG----SRLL 364 Query: 379 GGGIISGSKRS 389 GGG+I+ R Sbjct: 365 GGGLIADHARE 375 >gi|227486632|ref|ZP_03916948.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaerococcus lactolyticus ATCC 51172] gi|227235344|gb|EEI85359.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaerococcus lactolyticus ATCC 51172] Length = 367 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 138/372 (37%), Positives = 206/372 (55%), Gaps = 24/372 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + KD++V+V +SGGVDSSV A LLK +GYDV G+ ++ ++ + G C A +D DA Sbjct: 3 DKKDIKVIVGISGGVDSSVAALLLKEEGYDVTGIFMKNWDD---TDENGFCTAEEDFEDA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 VC+ I + +Y ++E+ + + V F Y G TP P + CN+ +KF L + L Sbjct: 60 VAVCNQIGIPYYSINFEKEYYDRVFSYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAKNL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD LATGHY R DG+ + M R +D +DQ+YFL +Q+Q+ D+ FP+GD++ Sbjct: 120 GADYLATGHYARVDR---TDGETK--MLRGLDNNKDQTYFLSQLSQEQIKDVLFPVGDLQ 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A++ GL A+K DS ICF+ + + + + A G+IV G I+G+H Sbjct: 175 KSEVREIAKKAGLATANKKDSTGICFIGERDFNEFLSHYLP--AQPGNIVDTEGHIMGKH 232 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEV-HRIYLREINWLG 312 +G++ +TIGQRRGLG+ GE FV L+KN V G L +++Y E + + Sbjct: 233 DGLMYHTIGQRRGLGIGGEGEAWFVYGKDLEKNELLVCQGKNNPLLFSNKLYGSEFSTIS 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 D F C K R Q + V+ DG V V ++K++ V GQA VFY + Sbjct: 293 D----KECPKEFDCTAKFRYRQADIKAHVKVLGDGKVEVTYDKTKA-VTPGQAAVFYDGE 347 Query: 372 SNEARVLGGGII 383 LG II Sbjct: 348 V----CLGSAII 355 >gi|320101712|ref|YP_004177303.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Isosphaera pallida ATCC 43644] gi|319748994|gb|ADV60754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Isosphaera pallida ATCC 43644] Length = 401 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 133/379 (35%), Positives = 203/379 (53%), Gaps = 20/379 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRVC 80 RVV+AMSGGVDSSV A LLK GYDV+G+ ++ + ++R +CC+ D DA+ V Sbjct: 5 RVVLAMSGGVDSSVAAGLLKNQGYDVVGLFMRTGVHFDDPTRRAKTCCSQFDALDAQAVA 64 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D +++ + D+E F ++ F Y G TP PCV CN +KF L + +++GAD Sbjct: 65 DRLDIPFHALDFEADF-GRIMEDFTEEYLRGRTPNPCVMCNIWLKFGKLWAYGKKVGADF 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R V D+ R RI R +D +DQSY L ++ L + P+G KE + Sbjct: 124 VATGHYAR---VVQDESGRPRI-ARGVDRAKDQSYVLSGVRREILQRMLLPVGGFTKEEI 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R AR+ L + K+DSQ+ICF+ Y ++ + G++V +G+++G H+G Sbjct: 180 RAKARDWNLPVHSKADSQEICFIPDHDYVKFIRERRPNLETAGEVVDESGRVVGTHDGYE 239 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +T+GQR+GL +A GEP +V+ +D +V+VG R +L + NW D V Sbjct: 240 GFTVGQRKGLKIAFGEPRYVIQIDPRRRQVVVGDRTALVKPGLIADRFNWHLDPPEPGQV 299 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRND--------DGVYVDFEKSEVGVASGQACVFYTSDS 372 ++ +IRS VP ++R + + V V F + + + GQ Y D Sbjct: 300 ---WEVVAQIRSQHAGVPALLERLEPSARSEGGERVVVRFAEPQSAITPGQVVTLY--DC 354 Query: 373 NEARVLGGGIISGSKRSDA 391 E RV+GGG I +DA Sbjct: 355 YE-RVVGGGWIERPLEADA 372 >gi|310643522|ref|YP_003948280.1| tRNA-specific 2-thiouridylase mnma [Paenibacillus polymyxa SC2] gi|309248472|gb|ADO58039.1| tRNA-specific 2-thiouridylase mnmA [Paenibacillus polymyxa SC2] Length = 373 Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 150/381 (39%), Positives = 208/381 (54%), Gaps = 30/381 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MAKANHETRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGRCTAEEDA 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RRVC+ I++ +Y ++E+ + + V F Y AG TP P V CNR +KF + L+ Sbjct: 58 EDVRRVCEQIDIPYYTVNFEKEYFDKVFSYFLDEYKAGRTPNPDVMCNREIKFGEFLNKA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R V +DG R + R +D +DQ+YFL A +Q QL FP+G Sbjct: 118 LDLGADYVATGHYARV---VEEDG--RFTLLRGVDSNKDQTYFLNALSQAQLSRTMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI--ALEGDIVHL-NG 250 + K VR +A GL A K DS +CF+ + + K +G A GD+V + G Sbjct: 173 HLPKPEVRRIAEAAGLYTAKKKDSTGVCFIGERNF----KEFLSGYLPAKGGDMVDIATG 228 Query: 251 QILGRHNGIINYTIGQRR---GLGVAMGEPLFVV--YLDKNSSRVIVGPR-ESLEVHRIY 304 ++ GRH+G++ YT+GQR+ G GEP FV L+KN V+ G R SL + Sbjct: 229 EVKGRHDGLMYYTLGQRQGLGIGGSGSGEPWFVADKDLEKNILYVVQGDRHHSLYSTSLI 288 Query: 305 LREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASG 362 ++NW+ DA G F+C K R Q V +Q DG V+V F+ + + G Sbjct: 289 ATDVNWIEGA---DARPSGEFRCTAKFRYRQPDQQVTLQWLPDGTVHVVFDIHQKAITPG 345 Query: 363 QACVFYTSDSNEARVLGGGII 383 QA VFY + R LGGG I Sbjct: 346 QAVVFYDGE----RCLGGGTI 362 >gi|205374227|ref|ZP_03227026.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus coahuilensis m4-4] Length = 371 Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 144/377 (38%), Positives = 201/377 (53%), Gaps = 27/377 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K PKD RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MNKAPKDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVIRVANQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLDHA 117 Query: 134 RQLGADVLATGHY--IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 +LGAD LATGHY + R DG+ + M R D +DQ+YFL +Q L + FP Sbjct: 118 MKLGADYLATGHYAQVEER-----DGEIK--MLRGKDENKDQTYFLNQLSQDVLKKVLFP 170 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 +G + K VR++A+E GL A K DS ICF+ + + + + + A G + L+G+ Sbjct: 171 IGSLDKSRVREIAKEAGLATATKKDSTGICFIGERNFKEFLGQYLP--AQPGTMETLSGE 228 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 + G+H G++ +TIGQR GLG+ GEP F V D + + V +SL I + Sbjct: 229 VKGQHEGLMYHTIGQRHGLGIGGAGEPWFAVGKDLERNVLFVEQGFDHDSLYSTSILATD 288 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 I+W D E F C K R Q V V+ D+ V V F++ V GQA V Sbjct: 289 ISWTSDFPKEQE----FHCTAKFRYRQSDNSVTVKLLDNNKVEVIFDEPIRAVTPGQAVV 344 Query: 367 FYTSDSNEARVLGGGII 383 FY D LGGG I Sbjct: 345 FYDGDV----CLGGGTI 357 >gi|21674668|ref|NP_662733.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobium tepidum TLS] gi|81790728|sp|Q8KBD3|MNMA_CHLTE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|21647873|gb|AAM73075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobium tepidum TLS] Length = 366 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 134/369 (36%), Positives = 196/369 (53%), Gaps = 27/369 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 V++ +SGGVDS+V A LL + GY V G+ +++ ++ + + A R+ D Sbjct: 6 HVIIGLSGGVDSAVAACLLIKQGYHVTGLNIRVLDTPEDTPTLAP--------SAMRISD 57 Query: 82 TINVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + VF + +F V+ F Y AG TP PC+ CN+ +K+ L R L AD Sbjct: 58 SEEFDFPVFTLNLSAKFARDVVGYFHDDYLAGRTPNPCMVCNKAIKWFGLFEAMRLLRAD 117 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ATGHY R+ L D R + + +D E+DQSYFL+ TQ +L FPLG K Sbjct: 118 LVATGHYARTEL---RDAVTR--LLKGVDPEKDQSYFLWMLTQAELAKTLFPLGGYTKAE 172 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRH 256 VR+LAR G+ A+K +SQ+ICFV Y + G+ G+IV G+++G H Sbjct: 173 VRELARSFGVHAAEKKESQEICFVPHDDYCAYLANAIPGLEARVAGGEIVDQAGKVIGHH 232 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G YTIGQRRGLGV+ GEP++V +D +R+ VG + LE + +NW+G Sbjct: 233 RGYPFYTIGQRRGLGVSTGEPVYVTEIDAEHNRIHVGSKADLECRSLIASGMNWIGIATP 292 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375 + + F+ +IR ++ DD +V F + + GVA GQA VFY D Sbjct: 293 DKS----FEAEARIRYRDRQSACMIEPMDDNRAWVSFREPKQGVACGQAVVFYDGD---- 344 Query: 376 RVLGGGIIS 384 VLGGGII+ Sbjct: 345 EVLGGGIIA 353 >gi|258510943|ref|YP_003184377.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477669|gb|ACV57988.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 365 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 140/374 (37%), Positives = 204/374 (54%), Gaps = 18/374 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK+ GYDVIGV ++ ++ + G+C A QD D RRVC+ Sbjct: 4 RVVVGMSGGVDSSVTALLLKQAGYDVIGVFMKNWDE---TDENGACTAEQDFEDVRRVCE 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E + V F + G TP P V CNR +KF +LL+ LGAD L Sbjct: 61 QIGIPYYGVNFEREYEERVFQHFLEEFKRGRTPNPDVLCNREIKFKELLACALDLGADYL 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + R +DG + R D +DQ+YFL TQ L FP+G + K VR Sbjct: 121 ATGHYAQVR--KDEDGT--VALLRGRDKNKDQTYFLHMLTQAPLRRAMFPIGHLTKPEVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +AR+ GL +A K DS ICF+ + + +++ A G I ++G++LG H+G++ Sbjct: 177 QIARDHGLHVAQKKDSTGICFIGERNFRAFLQQYLP--AQPGLIEDVDGRVLGEHDGLMY 234 Query: 262 YTIGQRRGL---GVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW-LGDGLFE 317 YTIGQR+GL G+ +P +DK+ +R ++ + + R+Y R + + E Sbjct: 235 YTIGQRKGLRLGGLPGRDPAPWFVVDKDLARNVLVVAQGHDHPRLYSRALTADTVSFVAE 294 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 F+C K R QD PV V+ +D V F++ + + GQ+ VFY + Sbjct: 295 RPPAKRFRCTAKFRYRQDEQPVEVEMTGEDTCRVIFDEPQRAITPGQSVVFYDGEV---- 350 Query: 377 VLGGGIISGSKRSD 390 LGGGII+ + D Sbjct: 351 CLGGGIIASREPVD 364 >gi|312875501|ref|ZP_07735504.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LEAF 2053A-b] gi|325912819|ref|ZP_08175197.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners UPII 60-B] gi|311089012|gb|EFQ47453.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LEAF 2053A-b] gi|325477812|gb|EGC80946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners UPII 60-B] Length = 375 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 141/379 (37%), Positives = 201/379 (53%), Gaps = 25/379 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDV+GV ++ ++ S G C A +D D +RV Sbjct: 7 IRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDDTDDS---GVCTATEDFEDVKRVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + N V F S Y G TP P + CN+ +KF L +L AD Sbjct: 64 DKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKLDADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY ++ V D+ +M RP D +DQ+YFL TQ+QL FPL D+ K V Sbjct: 124 IAMGHYAKT---VTDENGVVHMM-RPKDGNKDQTYFLSQVTQEQLKKAIFPLADLSKPQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A K DS ICF+ + + + + A+ G+IV +G+I+G+H+G++ Sbjct: 180 RMIAEQAGLATAKKKDSTGICFIGERNFKNFLSEFLP--AMGGNIVTSDGRIVGKHSGLM 237 Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ + P FVV + + +IV E L + E+++ Sbjct: 238 YYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSELLYASSLDASEVSFFTG 297 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSD 371 D + C K R Q V V V N D V+V+F++ V GQA VFY + Sbjct: 298 LPSNDTTI---HCTAKFRYRQPDVAVTVNYNKDNNTVHVEFDELARAVTPGQAIVFYDGE 354 Query: 372 SNEARVLGGGIISGSKRSD 390 LGG II + R + Sbjct: 355 ----ECLGGAIIDKAYRGN 369 >gi|302876907|ref|YP_003845540.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium cellulovorans 743B] gi|307687595|ref|ZP_07630041.1| tRNA-specific 2-thiouridylase MnmA [Clostridium cellulovorans 743B] gi|302579764|gb|ADL53776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium cellulovorans 743B] Length = 373 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 139/390 (35%), Positives = 209/390 (53%), Gaps = 23/390 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K K+++VV+ +SGGVDSSV A LK GYDVIGV + N+ G C + QD Sbjct: 1 MEKENKNIKVVLGVSGGVDSSVAALELKNQGYDVIGVFM---NNWDDEDENGVCTSVQDF 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D R+VCD+I+V +Y ++++ + + V F + Y +G TP P V CN+ +KF L Sbjct: 58 EDVRKVCDSISVPYYSVNFQKEYWDRVFEYFLAEYRSGRTPNPDVMCNKEIKFKAFLDFA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +GAD +A GHY + DG+ + + R D +DQ+YFL Q QL FP+G Sbjct: 118 LTVGADYIAMGHYAQVDF---RDGEYK--LLRAADENKDQTYFLCKLNQYQLSKSMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR+ ARE L A K DS +CF+ + + + N A G ++ L+G ++ Sbjct: 173 HLRKPEVREKAREANLVTATKKDSTGVCFIGEKNFRQFLN--NYLPAKSGPMMTLDGNVM 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVV--YLDKNSSRVIVGPRES-LEVHRIYLREIN 309 G H G+++YT+GQR+GLG+ GEP FVV L KN V+ G ++ L + + E++ Sbjct: 231 GEHIGLMHYTLGQRKGLGIGGAGEPWFVVDKDLKKNILYVVQGEQDPRLYSYGLTAVEVS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFY 368 W+ E F C K R Q V V QR D+ V+F + + + GQ VFY Sbjct: 291 WIS----EKEKPKTFNCTAKFRYRQKDQGVIVHQREDNTCIVEFIEPQKAITPGQIVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLS 398 D LGGG I +S +++L+ Sbjct: 347 DGD----ECLGGGTIDKYYKSKQHLQAVLN 372 >gi|330836254|ref|YP_004410895.1| tRNA-specific 2-thiouridylase mnmA [Spirochaeta coccoides DSM 17374] gi|329748157|gb|AEC01513.1| tRNA-specific 2-thiouridylase mnmA [Spirochaeta coccoides DSM 17374] Length = 357 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 133/376 (35%), Positives = 200/376 (53%), Gaps = 28/376 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCC----AGQDVYD 75 M+++V MSGG+DSSV A LLK+ GY+VIG T+ ++ + G+ C +++ + Sbjct: 1 MKILVGMSGGIDSSVAAWLLKQQGYEVIGATMSIWKEGTPYNGPAGNSCYQPETQEELAE 60 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 + +C I + H V D ++ + + V+ F + Y AG TP PCV CN +KF L+ R+ Sbjct: 61 IQEICRKIGIPHVVVDCQDMYEDIVLKNFRAEYLAGRTPNPCVWCNSKIKFGALIDFARK 120 Query: 136 LGA--DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 G D ATGHY R D R + R +DL +DQ+YFL TQ+QL + FPLG Sbjct: 121 SGIEFDKFATGHYARVDF---DKKTGRYRLRRAVDLHKDQTYFLHRLTQEQLSSVIFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDI-CFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 DM K+ VR + E G + +SQD C G Y D++ + +G+I+ G + Sbjct: 178 DMLKKDVRKIDEEQGFHAVGQEESQDFYC----GDYTDLLGVVPG----KGNIIDRQGTV 229 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G H G+ NYTIGQR+GLG+A PL+VV L S+ V+VG E R+ + +++W Sbjct: 230 MGTHTGVWNYTIGQRKGLGIASDRPLYVVELRPGSNEVVVGHEEDTLHTRVVIEDLSWSA 289 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYV-DFEKSEVGVASGQACVFYTSD 371 + +C +IRS+ +P V +D V F + GQ+ V Y D Sbjct: 290 VAALDTP----RECVARIRSASNPQMAMVSPGEDNTLVISFTGAVKAATPGQSLVVYDGD 345 Query: 372 SNEARVLGGGIISGSK 387 + VL GGIIS ++ Sbjct: 346 T----VLCGGIISSAR 357 >gi|311898474|dbj|BAJ30882.1| putative tRNA-specific 2-thiouridylase MnmA [Kitasatospora setae KM-6054] Length = 377 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 145/376 (38%), Positives = 199/376 (52%), Gaps = 24/376 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 +RV+ AMSGGVDS+V AA G++V GV L L S S R G+ CC +D DARR Sbjct: 16 LRVLAAMSGGVDSAVAAARAVEAGHEVTGVHLAL-ASNPQSFRTGARGCCTLEDSRDARR 74 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D I + YV+D ERFR VI F + YAAG TP PC+ CN +KF+ LL LG Sbjct: 75 AADVIGIPFYVWDLAERFREDVIDDFVAEYAAGRTPNPCLRCNEKIKFAALLDKAVALGF 134 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGHY +R+ DG R + R D +DQSY L QL FPLGD K+ Sbjct: 135 DAVCTGHY--ARIVDHPDGTRE--LHRAADAAKDQSYVLGVLDADQLAHSLFPLGDTTKD 190 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRHN 257 +R A GL +A K DS DICF+ G + +R+ GDI+ +G LG H+ Sbjct: 191 VIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLAERLGTA---PGDILDADGTKLGEHD 247 Query: 258 GIINYTIGQRRGL----GVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G +TIGQR+GL A G+P +V+ + + V VGP E L+VH + W G Sbjct: 248 GAYGFTIGQRKGLRLGRPAADGKPRYVLDISPVDNTVTVGPVEGLDVHALTAIRPRWCG- 306 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 A +G + ++R+ + VPV +D ++V + G+A GQA V Y + Sbjct: 307 ---TPAAGEG-RYTAQLRAHGEEVPVTAVLGEDELHVRLDTPARGIAPGQAVVLY----D 358 Query: 374 EARVLGGGIISGSKRS 389 RV+G I+ ++R+ Sbjct: 359 GTRVVGSATIASTERA 374 >gi|296393981|ref|YP_003658865.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Segniliparus rotundus DSM 44985] gi|296181128|gb|ADG98034.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Segniliparus rotundus DSM 44985] Length = 375 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 148/380 (38%), Positives = 193/380 (50%), Gaps = 36/380 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY----NSRKASKRKGSCCAGQDVYDA 76 M+V+ AMSGGVDS+V AA G+DV GV L L N+R S+ CC+ +D DA Sbjct: 1 MKVLAAMSGGVDSAVAAARAVEAGHDVTGVHLALSRNPDNTRGGSR---GCCSVEDSRDA 57 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RR D + + YV+D+ E F VI F ++YA G TP PCV CN +KF+ LL L Sbjct: 58 RRAADMLGIPFYVWDFSEAFEREVIDQFVATYAEGRTPNPCVTCNEKIKFAALLDRAVAL 117 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 G D +ATGHY R DG R R +D ++DQSY L T QQL FP+GD Sbjct: 118 GFDKVATGHYARL------DGTTLR---RAVDADKDQSYVLAVLTAQQLSRAMFPVGDTP 168 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV--------HL 248 K +R+ A GL +A K DS DICF+ G D + A IA+ H Sbjct: 169 KPRIREEAERRGLAVAHKPDSHDICFIPSG---DTKAFLGARIAVRSGAAARPGEFRDHR 225 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 G +LG H+G I +T+GQRRGL + G P +V ++ + V VG E L V I Sbjct: 226 TGAVLGHHDGAIGFTVGQRRGLRLGNPTGDGVPRYVTAVEPETGVVRVGTMEDLRVFSIS 285 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 +R W G A F C V+IR+ P V+ G V+ ++ VASGQ Sbjct: 286 VRTAVWSGG----AAPAAAFPCVVQIRAHGGFAPARVRAAGAGFEVELDEPLEAVASGQT 341 Query: 365 CVFYTSDSNEA-RVLGGGII 383 V Y D RV+G G+I Sbjct: 342 VVLYDPDPVLGDRVIGSGVI 361 >gi|220935011|ref|YP_002513910.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thioalkalivibrio sp. HL-EbGR7] gi|219996321|gb|ACL72923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thioalkalivibrio sp. HL-EbGR7] Length = 364 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 138/371 (37%), Positives = 205/371 (55%), Gaps = 27/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++V MSGGVDSSV A LL + GY V G+ ++ + G C A +D+ DA+ VC+ Sbjct: 6 HIIVGMSGGVDSSVAALLLIQAGYRVEGLFMKNWEE---DDEPGYCAAAEDLADAKAVCE 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + ++ + + V F Y AG TP P + CN+ +KF L RQLGAD + Sbjct: 63 VLEIPLHKVNFSADYWHRVFSHFLDEYQAGRTPNPDILCNKEIKFRAFLDYARQLGADGI 122 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R +G DG+ ++ D +DQ+YFL+ Q+QL FP+G+++K VR Sbjct: 123 ATGHYAR----IGRDGESYTLLAG-RDANKDQTYFLYTLGQEQLSKSLFPIGELEKPRVR 177 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 DLAR GL + K DS ICF+ + ++ D ++ A G+IV G LG H G++ Sbjct: 178 DLARAHGLPVFAKKDSTGICFIGERRFRDFLQTYLP--ARPGEIVDPEGNRLGEHQGLMY 235 Query: 262 YTIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIV--GPRESLEVHR-IYLREINWLGD 313 YT+GQR+GLG+ GE P +VV D +R+IV G L HR + ++++W+ Sbjct: 236 YTLGQRQGLGIGGVHDAGEAPWYVVDKDMAHNRLIVAQGHDHPLMHHRGLEAQDLHWVSG 295 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 +A + F C +IR Q V+ + DG V V F++++ +A GQ+ VFY D Sbjct: 296 ----EAPREAFSCRARIRHRQPLQACRVEPHADGRVRVLFDEAQRAIAPGQSVVFYQED- 350 Query: 373 NEARVLGGGII 383 R LGGGII Sbjct: 351 ---RCLGGGII 358 >gi|323490019|ref|ZP_08095240.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Planococcus donghaensis MPA1U2] gi|323396315|gb|EGA89140.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Planococcus donghaensis MPA1U2] Length = 371 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 200/372 (53%), Gaps = 17/372 (4%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K P+D RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MTKAPQDTRVVVGMSGGVDSSVAAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY +++ ++G+ + M R D +DQ+YFL Q QL + FP+G Sbjct: 118 LSLGADYLATGHY--AQVEHAENGETK--MLRGKDNNKDQTYFLNQLDQHQLSKVMFPIG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K+ VR++A E L A K DS ICF+ + + + + + A G + L G + Sbjct: 174 HMEKKKVREIALEAELATATKKDSTGICFIGERNFKEFLGQYLP--AQPGQMETLEGVKM 231 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G H+G++ YTIGQR+GLG+ G+P FV+ D + + VG +++ ++ + + Sbjct: 232 GTHDGLMYYTIGQRQGLGIGGAGDPWFVIGKDLERNVLYVG--QNIHHDALFSDSLTAVN 289 Query: 313 DGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + G +C K R Q V V V+ + V F + + GQA VFY + Sbjct: 290 LSFTSNTPPSGILECTAKFRYRQQDVGVSVEFKGESAIVTFAEPVRAITPGQAVVFYDGE 349 Query: 372 SNEARVLGGGII 383 LGGG I Sbjct: 350 ----ECLGGGTI 357 >gi|213964680|ref|ZP_03392880.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium amycolatum SK46] gi|213952873|gb|EEB64255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium amycolatum SK46] Length = 379 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 143/388 (36%), Positives = 210/388 (54%), Gaps = 30/388 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDSSV AA G++V+GV L L + S R GS CC+ +D DARR Sbjct: 1 MRVLAAMSGGVDSSVAAARALAAGHEVVGVHLALSKDPQ-SVRAGSRGCCSLEDSGDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD + + YV+D+ ERF+ V+ F SY GETP PC+ CN +KF+ LL LG Sbjct: 60 VCDELGIPFYVWDFSERFKEEVMDDFYDSYERGETPNPCLRCNERIKFAALLERGLALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGHY +GDDG ++ R D+++DQSY L ++QL FP+GD +K Sbjct: 120 DAVVTGHYA----LLGDDG----LLRRGRDMKKDQSYVLGVLDREQLSHSLFPVGDTEKP 171 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV--HLNGQILGRH 256 +R+ AR+MGL A+K DS DICF+ G + + A I ++ G + H Sbjct: 172 EIREEARDMGLGTANKPDSYDICFIPDG---NTQAFLGAKIGRRPGLIVDKETGDTVAEH 228 Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G+ +TIGQR+G+G+ A G+P +V +D +++ V +G + L V+ + WL Sbjct: 229 DGVYGFTIGQRKGIGLPGPMADGKPRYVTGIDADTATVTIGTADDLNVNVLQADRAIWLA 288 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDP----VPVFVQRNDD-----GVY-VDFEKSEVGVASG 362 + + K V++R+ P + V +DD G + + + GVA G Sbjct: 289 NPDEVLVASEAGKLQVQVRAHGRPIDCRIEVLAGPDDDVTGRGGTFRLHLSEPLRGVAPG 348 Query: 363 QACVFYTSDSNEARVLGGGIISGSKRSD 390 QA V Y +D+ VLG G I + R + Sbjct: 349 QAAVLYHTDTAGDYVLGSGTIVSTAREE 376 >gi|284032792|ref|YP_003382723.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Kribbella flavida DSM 17836] gi|283812085|gb|ADB33924.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Kribbella flavida DSM 17836] Length = 372 Score = 219 bits (558), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 152/384 (39%), Positives = 200/384 (52%), Gaps = 29/384 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA + G++V+GV L L + + S R G+ CC +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARMAEAGHEVVGVHLALSRNPQ-SYRSGARGCCTIEDSRDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D I + YV+D ERF V+ F + YAAG TP PC+ CN VKFS +L L Sbjct: 60 AADVIGIPFYVWDLAERFHADVVEDFVAEYAAGRTPNPCLRCNEKVKFSAVLERALALDF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY +++ G R + R +D +DQSY L TQ+QL FPLGD K Sbjct: 120 DAVATGHY--AQIVETPAG---RELHRAVDQAKDQSYVLGVLTQEQLRHAFFPLGDTPKT 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R A GL +A K DS DICF+ G + + G A GDIV NG LG H G Sbjct: 175 EIRAEAERRGLSVAAKPDSHDICFIADGNTPGFLSK-QLGEA-PGDIVDSNGTKLGEHKG 232 Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +T+GQR+GL + A G+P FV+ + V VG RE L V + + W G Sbjct: 233 THGFTVGQRKGLRIGTPAADGKPRFVLDISPVDRTVTVGSREELAVESLTASKPRWCGPV 292 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 E V ++R+ D V V + D V+V F++ VA GQA V Y + Sbjct: 293 PTETLHVK-----AQLRAHGDEVAVTARVEGDQVFVTFDEPTAAVAPGQAVVLY----DG 343 Query: 375 ARVLGGGIISGSKRSDAVEESLLS 398 RV+G I D V +LLS Sbjct: 344 TRVVGSATI------DTVARALLS 361 >gi|157693155|ref|YP_001487617.1| tRNA-specific 2-thiouridylase MnmA [Bacillus pumilus SAFR-032] gi|194017112|ref|ZP_03055724.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus pumilus ATCC 7061] gi|166991121|sp|A8FFP0|MNMA_BACP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|157681913|gb|ABV63057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus pumilus SAFR-032] gi|194010980|gb|EDW20550.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus pumilus ATCC 7061] Length = 372 Score = 219 bits (558), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 140/375 (37%), Positives = 201/375 (53%), Gaps = 21/375 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K P+D RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MTKRPEDTRVVVGMSGGVDSSVAALMLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVIRVCNQIGIPYYAVNFEKQYWDKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY R GD+ K M R +D +DQ+YFL TQ+QL + FP+G Sbjct: 118 LSLGADYLATGHYARVDR-TGDEVK----MLRGLDANKDQTYFLNQLTQEQLDKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 D++K+ VR+LA+E L A K DS ICF+ + + + + A G + ++G++ Sbjct: 173 DLEKKRVRELAKEAELATATKKDSTGICFIGERNFKTFLSQYLP--AQPGVMQTMDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G H+G++ YTIGQR+GLG+ G+P FVV D + + V + +Y I+ + Sbjct: 231 GEHDGLMYYTIGQRQGLGIGGSGDPWFVVGKDLEQNILFV--EQGFHNPLLYSESISAVN 288 Query: 313 DGLFEDAVV---DGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFY 368 +V C K R Q+ V V+ + V F++ V GQA VFY Sbjct: 289 ISWTRPHIVGENGELTCTAKFRYRQEDHHVKVKMTGEQEAMVIFDEPVRAVTPGQAVVFY 348 Query: 369 TSDSNEARVLGGGII 383 D LGGG I Sbjct: 349 DGD----ECLGGGTI 359 >gi|315303264|ref|ZP_07873908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria ivanovii FSL F6-596] gi|313628376|gb|EFR96865.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria ivanovii FSL F6-596] Length = 371 Score = 219 bits (558), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 140/377 (37%), Positives = 203/377 (53%), Gaps = 23/377 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D+RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D RV Sbjct: 7 DIRVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYEDVIRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + I + +Y ++E+ + + V F + Y G TP P V CN+ +KF L LGAD Sbjct: 64 ANQIGIPYYAVNFEKEYWDKVFTYFLNEYKLGRTPNPDVMCNKEIKFKAFLEHAESLGAD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + + VGD+ + + R +D +DQ+YFL +Q+QL + FPLG M+K Sbjct: 124 FVATGHYAQVK-QVGDEIE----LLRGVDNNKDQTYFLNQLSQEQLQKVMFPLGGMEKSE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A + GL A+K DS ICF+ + + + A G + LNG++LG+H+G+ Sbjct: 179 VREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGKMQTLNGEVLGKHDGL 236 Query: 260 INYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315 + YTIGQR GLG+ GEP FVV D + + V E+L + +I++ + Sbjct: 237 MYYTIGQRHGLGIGGDGEPWFVVGKDLTENILFVEQGFHHETLYSDSLIATDISFTTNA- 295 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 A +C K R Q V V R+D+ V F + + GQA VFY D Sbjct: 296 ---AKPKTIECTAKFRYRQTDTKVTVHLRDDNTAEVVFAEPVRAITPGQAVVFYDGDI-- 350 Query: 375 ARVLGGGIISGSKRSDA 391 LGGG I ++ A Sbjct: 351 --CLGGGTIDTVWKNGA 365 >gi|323704672|ref|ZP_08116250.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacterium xylanolyticum LX-11] gi|323536134|gb|EGB25907.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacterium xylanolyticum LX-11] Length = 369 Score = 219 bits (558), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 138/372 (37%), Positives = 205/372 (55%), Gaps = 24/372 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++++VVV MSGGVDSSV A LLK GYDVIG+ ++ ++ S G C A +D D R Sbjct: 6 QNVKVVVGMSGGVDSSVSALLLKEQGYDVIGIFMKNWDEEDDS---GYCTAAEDYEDVVR 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD I + +Y ++ + + + V F + Y +G TP P V CN+ +KF L + ++GA Sbjct: 63 VCDKIGIPYYSINFTKEYWDRVFQYFLNEYKSGRTPNPDVMCNKEIKFKAFLEFSMKIGA 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R DG + M + +D +DQ+YFL Q+QL FP+G + K Sbjct: 123 DYIATGHYARIEHI---DGHYK--MLKGVDKNKDQTYFLCELGQKQLSKTMFPIGHLDKS 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++AR+ GL ADK DS ICF+ + K+ + + + A G+I L+G++LGRH+G Sbjct: 178 EVREIARKAGLKTADKKDSTGICFIGERKFKEFLNQFLP--AKPGEIRDLSGRVLGRHDG 235 Query: 259 IINYTI---GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLG 312 ++ YT+ GV GEP FVV D ++ + V +L + ++ + +NW+ Sbjct: 236 LMFYTLGQRRGIGIGGVGTGEPWFVVDKDVENNILYVAQGDKNPALYSYGLFTKNVNWI- 294 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 DG D D +C K R Q V V + D+G V F+K + V GQ VFY + Sbjct: 295 DG---DMNFDELRCKAKFRYRQPDQDVMVFKKDNGYLVVFDKPQRAVTPGQFVVFYDGEY 351 Query: 373 NEARVLGGGIIS 384 LGGG+I Sbjct: 352 ----CLGGGVIE 359 >gi|257054918|ref|YP_003132750.1| tRNA-specific 2-thiouridylase MnmA [Saccharomonospora viridis DSM 43017] gi|256584790|gb|ACU95923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Saccharomonospora viridis DSM 43017] Length = 363 Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 149/369 (40%), Positives = 196/369 (53%), Gaps = 23/369 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV+GV L L +++ + R GS CC+ +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVDAGHDVVGVHLAL-SAKPGTLRTGSRGCCSLEDSNDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ ERF V+ F YAAG TP PCV CN +KF LL LG Sbjct: 60 AADILGIPFYVWDFAERFTEEVVETFIGEYAAGRTPNPCVTCNEKIKFEALLEKAVALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGHY +RL V D R R D +DQSY L + +QL FPLGD +K Sbjct: 120 DAVCTGHY--ARLSVVDGVPELR---RSADESKDQSYVLASLKPEQLRHAMFPLGDSRKP 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVHL-NGQILGR 255 VR A E GL +A K DS DICF+ G K F + KR+ GD+V G +LGR Sbjct: 175 EVRAEAAERGLPVARKPDSHDICFIPDGDTKAF-LEKRLG---QRPGDLVDAETGAVLGR 230 Query: 256 HNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 H G+ +TIGQR+GLG+ G+P +V+ L+ S V VG + L V+RI W Sbjct: 231 HTGVHGFTIGQRKGLGIDAPAPDGKPRYVLALEPVSGTVKVGSGDKLAVNRIEGERPIWP 290 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 E + +C ++R+ P + DD V V + GVA GQ V Y D Sbjct: 291 S----ERPLAGPTECVAQVRAHGGTAPAVAEVVDDRVVVHLREPLRGVAPGQVVVLYRED 346 Query: 372 SNEARVLGG 380 + V+ G Sbjct: 347 AEAGDVVLG 355 >gi|73662449|ref|YP_301230.1| putative tRNA methyltransferase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642746|sp|Q49Y59|MNMA_STAS1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|72494964|dbj|BAE18285.1| putative tRNA methyltransferase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 370 Score = 219 bits (557), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 139/370 (37%), Positives = 202/370 (54%), Gaps = 22/370 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD RVVV MSGGVDSSV A +LK GYDVIG+ ++ +++ + G C A +D D Sbjct: 4 KDTRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDN---TDENGYCTATEDYNDVIA 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L +LGA Sbjct: 61 VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R + +DG M R +D +DQ+YFL +Q QL + FP+GD++K+ Sbjct: 121 DYVATGHYARVRRH--EDGHVE--MLRGVDNNKDQTYFLNQLSQSQLSRVMFPIGDIEKK 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E L A K DS ICF+ + + + + + A G++ L G+ +G H G Sbjct: 177 EVRRIAEEQDLATAKKKDSTGICFIGERNFKEFLSQYLP--AQSGEMRTLKGEKIGTHAG 234 Query: 259 IINYTIGQRRGLGVAM-GEPLFVV--YLDKNSSRVIVG-PRESLEVHRIYLREINWLGDG 314 ++ YTIGQR GLG+ G+P FVV LD N V G ++L + +I+++ D Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVVGKNLDDNILYVEQGFHHDALYSDYLIASDISFVNDV 294 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 E +GF+C K R Q VFV+ N++ + V F + + GQ+ V Y D Sbjct: 295 DLE----NGFECTAKFRYRQKDTKVFVKNENENAIRVIFNEPVRAITPGQSVVLYDGDV- 349 Query: 374 EARVLGGGII 383 LGG I Sbjct: 350 ---CLGGATI 356 >gi|94984899|ref|YP_604263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Deinococcus geothermalis DSM 11300] gi|205816613|sp|Q1J090|MNMA_DEIGD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|94555180|gb|ABF45094.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Deinococcus geothermalis DSM 11300] Length = 381 Score = 219 bits (557), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 141/374 (37%), Positives = 206/374 (55%), Gaps = 19/374 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+ AMSGGVDSSV AALLK GY VIG ++ + K +CC+ Y+ARRV + Sbjct: 10 RVLCAMSGGVDSSVTAALLKDAGYQVIGAMMRFWPDDKRVDTFDTCCSPDAAYEARRVAE 69 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + V Y+ DY E+F++ ++ PF S YA G TP PCV+CN VKF +L+ + LG + Sbjct: 70 QVGVPFYLLDYREQFQHHIVGPFLSEYAQGRTPNPCVNCNTKVKFDELVKKAKMLGCRYV 129 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY++ +DG R D +DQ+YFL+ T ++ L + FP+G+++K VR Sbjct: 130 ATGHYVKR--VEREDGSVE--FHRGDDPRKDQTYFLWGTPREALPFILFPVGELEKPRVR 185 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRHNGII 260 ++A E GL A K +SQ+ICFV GK D V + + L +I G+++G H G Sbjct: 186 EIAAEKGLLTARKPESQNICFV-PGKVQDFVAEHLPQRQGLIREI--RTGEVVGEHLGTQ 242 Query: 261 NYTIGQRRGLGVAMGEPL-FVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YT+GQ++GLG+ + VV+LD ++ V VG E + N+L D Sbjct: 243 FYTLGQKKGLGLYQTHRVRHVVHLDPETNTVWVGDYEDCLWTGLKAEGANYLLDLAELPR 302 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 V+ V++R PV V D+ G + FE+ + VA GQ+ V Y R+L Sbjct: 303 EVE-----VQVRYRTKPVRATVLHADEHGFELQFEEPQFAVAPGQSAVLYAG----TRLL 353 Query: 379 GGGIISGSKRSDAV 392 GGG+I+ R+ V Sbjct: 354 GGGLIADHARNLPV 367 >gi|270291444|ref|ZP_06197666.1| tRNA methyl transferase [Pediococcus acidilactici 7_4] gi|304385157|ref|ZP_07367503.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pediococcus acidilactici DSM 20284] gi|270280290|gb|EFA26126.1| tRNA methyl transferase [Pediococcus acidilactici 7_4] gi|304329351|gb|EFL96571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pediococcus acidilactici DSM 20284] Length = 377 Score = 219 bits (557), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 141/379 (37%), Positives = 200/379 (52%), Gaps = 34/379 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSVVA LLK+ GYDV+GV ++ ++ + G C A +D D +V Sbjct: 8 RVVVGMSGGVDSSVVAYLLKKQGYDVVGVFMKNWDD---TDENGYCTATEDYKDVAKVAA 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F Y G TP P V CN +KF L LGAD + Sbjct: 65 KIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPNPDVICNNEIKFKAFLDYAISLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D + + R D +DQ+YFL + +QL + FPLG M K VR Sbjct: 125 ATGHYAQ----VERDENGHQHLLRATDSNKDQTYFLSQLSAEQLDRVMFPLGGMVKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A+E GL + DK DS ICF+ + + + + N A G ++ L+G++ G H G++ Sbjct: 181 AIAKEAGLAVYDKKDSVGICFIGEKNFREFLS--NYLPAKPGKMMTLDGEVKGEHAGLMY 238 Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGPRESLEVHRIY--------LREIN 309 YTIGQRRGLG+ G EP FVV D + + + VG + + +Y + +N Sbjct: 239 YTIGQRRGLGIGGGSKNNEPWFVVGKDLSKNILYVG--QGFDNPHLYAASLDASDMHFVN 296 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVF 367 LG+ D F+C K R VPV V +DD V VDF++ + GQA V Sbjct: 297 RLGEERGHD-----FRCTAKFRYRAKDVPVTVHFSDDFSKVTVDFDEPARAITPGQALVL 351 Query: 368 YTSDSNEARVLGGGIISGS 386 Y + +GGGII + Sbjct: 352 YDGE----ECIGGGIIDAA 366 >gi|189347539|ref|YP_001944068.1| tRNA-specific 2-thiouridylase MnmA [Chlorobium limicola DSM 245] gi|189341686|gb|ACD91089.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobium limicola DSM 245] Length = 358 Score = 219 bits (557), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 140/366 (38%), Positives = 194/366 (53%), Gaps = 25/366 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAGQDVYDARRVCD 81 VV +SGGVDS+V A LL R GY V G+ +++ ++ + S D D + Sbjct: 7 VVTGISGGVDSAVAACLLHRQGYRVTGINIRILDTPVDNPSLQPSRLVISDHPDFQIPVF 66 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 ++N+S FD AVI F Y +G TP PC+ CN+T+K+ LL R L A+++ Sbjct: 67 SLNLSAKFFD-------AVIRYFRDDYLSGRTPNPCMVCNKTIKWYGLLEAARMLEAEMI 119 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R+ DG+ R + + D E+DQSYFL+ +Q L PLG + K VR Sbjct: 120 ATGHYARTSF---SDGRYR--LMKGCDPEKDQSYFLWMLSQADLSKTLLPLGALTKPEVR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRHNG 258 +LAR G+ A+K +SQ+ICFV Y +K G+ E G+IV +G +LG H G Sbjct: 175 ELARTFGVRAAEKKESQEICFVPNDDYCSYLKNSIPGLEQEVAGGEIVDADGNVLGHHRG 234 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 YTIGQRRGLG+ +PL+V LD +R+ VG + LE + +NW+G + Sbjct: 235 YPFYTIGQRRGLGIPAPKPLYVTGLDARHNRIRVGGKADLECRALTASGLNWIGI----E 290 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 A F+ +IR P V+ + V FE + GV GQA VFY SD V Sbjct: 291 APSSPFETAARIRYRDKESPCTVEPIGGNKATVTFETPKHGVTPGQAVVFYRSD----EV 346 Query: 378 LGGGII 383 LGGG I Sbjct: 347 LGGGFI 352 >gi|226356219|ref|YP_002785959.1| tRNA-specific 2-thiouridylase MnmA [Deinococcus deserti VCD115] gi|226318209|gb|ACO46205.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Deinococcus deserti VCD115] Length = 391 Score = 219 bits (557), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 136/382 (35%), Positives = 201/382 (52%), Gaps = 35/382 (9%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P+ RV+ AMSGGVDSSV AALLK GY V+G ++ + K +CC+ Y+AR Sbjct: 16 PQGERVLCAMSGGVDSSVTAALLKDQGYQVVGAMMRFWPDDKRVDTFDTCCSPDAAYEAR 75 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV + + V Y+ DY E+F+ ++ PF YA G TP PCV+CN VKF +L+ + LG Sbjct: 76 RVAEQVGVPFYLLDYREQFQRHIVGPFLDEYARGRTPNPCVNCNTKVKFDELVKKAKMLG 135 Query: 138 ADVLATGHYIRS--------RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 +ATGHY++ + GDD + +DQ+YFL+ T + L + Sbjct: 136 CRYVATGHYVKRVENAAGEVEFWRGDDPR------------KDQTYFLWGTPRDALPYIL 183 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHL 248 FP+G+++K VR +A E GL A K +SQ+ICFV GK D V + + +I Sbjct: 184 FPVGELEKPQVRQIAEERGLLTARKPESQNICFV-PGKVQDFVAEHLPQATGFIREIA-- 240 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPL-FVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 +G+++G H G YT+GQ++GLG+ + VV+LD ++ V VG E + Sbjct: 241 SGEVVGEHLGTQFYTLGQKKGLGLYQSHRIRHVVHLDPATNTVWVGDYEDCMWTGLRASS 300 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACV 366 N+L D D D V++R PV V ++ G ++F + + VA GQ+ V Sbjct: 301 ANYLLD--LRDLPQD---LEVQVRYRTAPVKARVVHADEHGFKLEFAEPQFAVAPGQSAV 355 Query: 367 FYTSDSNEARVLGGGIISGSKR 388 Y R+LGGG+I R Sbjct: 356 LYAG----PRLLGGGLIEDHSR 373 >gi|325847124|ref|ZP_08169950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481096|gb|EGC84141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 369 Score = 218 bits (556), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 138/380 (36%), Positives = 211/380 (55%), Gaps = 22/380 (5%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 +K+ KD++V+V +SGGVDSSV A LLK +GYDV G+ ++ ++ + G C A D Sbjct: 3 NKDKKDIKVIVGVSGGVDSSVAALLLKEEGYDVSGIFMKNWDEEDEN---GVCTAEVDYE 59 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA +VC+ I + +Y ++E+ + + V F Y G TP P + CN+ +KF L + Sbjct: 60 DAVKVCNQIGIPYYSINFEKEYYDRVFSYFLDEYKKGRTPNPDIMCNKEIKFKAFLDYAK 119 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD LATGHY R G+ M R +D +DQ+YFL +Q Q+ D+ FP+G+ Sbjct: 120 DLGADYLATGHYARVDRSSGE-----TKMLRGIDSNKDQTYFLSQLSQDQIKDVLFPVGN 174 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 + K+ VR +A+E L ADK DS ICF+ + + + + N A EG+IV +G I+G Sbjct: 175 LDKKEVRKIAKENNLATADKKDSTGICFIGERNFNEFLS--NYLPAKEGNIVDTDGNIMG 232 Query: 255 RHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINW 310 +H G++ +TIGQRRGLG+ GE FV D + +IV E L +R+ ++ Sbjct: 233 KHYGLMYHTIGQRRGLGIGGEGEAWFVCGKDLEKNELIVCQGKNNEKLFSNRLIGSNLSS 292 Query: 311 L-GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 + +GL ++ F C K R Q + V+ DDG V + ++K++ V GQA VFY Sbjct: 293 ISAEGLKKE-----FDCTCKFRYRQKDINSHVKILDDGKVEIRYDKTKA-VTPGQAAVFY 346 Query: 369 TSDSNEARVLGGGIISGSKR 388 + + + +G KR Sbjct: 347 DGEVCLGSCIIDEVYNGDKR 366 >gi|300781387|ref|ZP_07091241.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium genitalium ATCC 33030] gi|300533094|gb|EFK54155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium genitalium ATCC 33030] Length = 361 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 145/372 (38%), Positives = 195/372 (52%), Gaps = 22/372 (5%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVCDTINV 85 MSGGVDSSV AA L G+DV+GV L L ++ CC+ +D DARRVCD + + Sbjct: 1 MSGGVDSSVAAARLVDAGHDVVGVHLALSKDAHQTRESARGCCSLEDSADARRVCDKLGI 60 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145 YV+D+ +RF+ VI F SYA GETP PC+ CN +KF+ LL QLG D +ATGH Sbjct: 61 PFYVWDFSDRFKEDVIDDFVDSYARGETPNPCLRCNEKIKFAALLERAVQLGFDAIATGH 120 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y L G RR I D ++DQSY L T+ +L FP+GD +K +R+ A Sbjct: 121 YA---LIDGAGNLRRSI-----DPQKDQSYVLGVMTRDELDRCIFPVGDTEKPQIREEAA 172 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNGIINYTI 264 G A K DS DICF+ G + R I + G IV +G L H+G YTI Sbjct: 173 AYGFSTASKPDSYDICFIPDGNTQAFLGR---SIGMRPGMIVDESGAELKEHDGAFQYTI 229 Query: 265 GQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA- 319 GQR+GL + A G+P +V +D + V VGPR +L+V I+ + L + + + Sbjct: 230 GQRKGLNIRVPAADGKPRYVTDIDAATGTVTVGPRAALDVRTIHADRLKILHEAMSAASQ 289 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV--GVASGQACVFYTSDSNEAR- 376 D V+IR+ V + D + E +E GVA GQA V Y D + Sbjct: 290 CSDPIAAHVQIRAHGGVVSCTAHVDLDADTMTLELAEPLSGVARGQAAVLYLPDPDGQGD 349 Query: 377 -VLGGGIISGSK 387 VLG G I G++ Sbjct: 350 VVLGSGTICGTE 361 >gi|116492933|ref|YP_804668.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, PP-loop ATPase [Pediococcus pentosaceus ATCC 25745] gi|122265603|sp|Q03EZ6|MNMA_PEDPA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|116103083|gb|ABJ68226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pediococcus pentosaceus ATCC 25745] Length = 377 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 145/393 (36%), Positives = 204/393 (51%), Gaps = 37/393 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSVVA LLK+ GYDV+GV ++ ++ + G C A +D D +V Sbjct: 8 RVVVGMSGGVDSSVVAYLLKQQGYDVVGVFMKNWDD---TDENGYCTATEDYKDVAKVAA 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F Y G TP P V CN +KF L LGAD + Sbjct: 65 KIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPNPDVICNNEIKFKAFLDYAISLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D + + R D +DQ+YFL + +QL + FPLG M K VR Sbjct: 125 ATGHYAQ----VERDENGHQHLLRATDSNKDQTYFLSQLSAEQLDRVMFPLGGMIKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A E GL + DK DS ICF+ + + + + N A G ++ L+G++ G H G++ Sbjct: 181 KVAEEAGLSVYDKKDSVGICFIGEKNFREFLG--NYLPAKAGKMMTLDGEVKGEHAGLMY 238 Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGPRESLEVHRIY--------LREIN 309 YTIGQRRGLG+ G EP FVV D + + + VG + E +Y + +N Sbjct: 239 YTIGQRRGLGIGGGSKNNEPWFVVGKDLSKNILYVG--QGFENSHLYAASLDASDMHFVN 296 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVF 367 LG+ D F+C K R VPV V ++D V VDF+ + GQA V Sbjct: 297 KLGEERGRD-----FRCTAKFRYRAQDVPVTVHFSEDFSKVTVDFDDPARAITPGQALVL 351 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 Y + +GGGII + S E+ +L I Sbjct: 352 YDGE----ECIGGGIIDAAYNS---EKKMLQYI 377 >gi|224476719|ref|YP_002634325.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus carnosus subsp. carnosus TM300] gi|254811461|sp|B9DNH6|MNMA_STACT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|222421326|emb|CAL28140.1| putative (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus carnosus subsp. carnosus TM300] Length = 370 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 141/380 (37%), Positives = 197/380 (51%), Gaps = 42/380 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 +D RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 4 QDTRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIA 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L +LGA Sbjct: 61 VCNQIGIPYYAVNFEQEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMKLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + R D M R +D +DQ+YFL T +QL + FPLG M+K Sbjct: 121 DYVATGHYAQVRR----DADGNVEMLRGVDNNKDQTYFLNQLTHEQLSKVMFPLGGMEKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E L A K DS ICF+ + + + + N A GD+ LNG+ +G H+G Sbjct: 177 EVRRIAAEQDLATAKKKDSTGICFIGERNFKEFLS--NYLPAQSGDMRTLNGKKMGTHSG 234 Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++ YTIGQR GLG+ G+P FVV ++LE + +Y+ E + D L+ Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLEDNVLYV-EQGFHHDALYS 280 Query: 318 DAVV-------------DGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQ 363 D ++ DG +C K R Q V V R D+ + VDF++ + GQ Sbjct: 281 DYLIASDVSLVNDIDLTDGLECTAKFRYRQKDTKVTVTRIDENQIRVDFDQPVRAITPGQ 340 Query: 364 ACVFYTSDSNEARVLGGGII 383 A V Y D LGG I Sbjct: 341 AVVLYDGDV----CLGGATI 356 >gi|300087159|ref|YP_003757681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299526892|gb|ADJ25360.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 359 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 135/373 (36%), Positives = 203/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAG----QDVYD 75 +++VA+SGGVDS+V AAL + GYDV G+ + +Y+ ++ K C G +DV D Sbjct: 4 KILVALSGGVDSAVAAALAQESGYDVTGIIMTIYDGPESPNEKSHKHGCYGPGEEEDVKD 63 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A V + + VFD + +R ++ F + Y AG TP PCV CN+ +K LL R+ Sbjct: 64 AEAVAQHLGIKLQVFDLKNEYRTNILESFKNEYRAGRTPNPCVYCNQQIKLGALLDKARE 123 Query: 136 LGADV--LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 G D + TGHY R+ + R R++ R +DQSYFL +Q QL LRFPLG Sbjct: 124 SGLDFEFVFTGHYARTDFH--HQSNRYRLL-RARYHNKDQSYFLSRLSQAQLRILRFPLG 180 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 D+ K+ VR LA + L ++ K +SQ+ G Y +V + G I + +G I+ Sbjct: 181 DLSKDEVRKLAERINLPVSRKEESQNFI---SGGYRQLVCSQDTS----GPIKNKSGDII 233 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+H+GI ++TIGQR GLG++ EPL+VV +D + ++VG R +L I + ++NW+ Sbjct: 234 GQHSGISSFTIGQRHGLGLSSPEPLYVVQIDAPENTIVVGARSALYRDEIQVEKLNWISI 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND--DGVYVDFEKSEVGVASGQACVFYTSD 371 E+ V + ++RS+ P V N D V V FE ++ A GQ VFY D Sbjct: 294 SQLENPV----QLTARVRSAAVPAAAMVIPNHLTDSVTVRFEVPQMAPAPGQIAVFYEDD 349 Query: 372 SNEARVLGGGIIS 384 V+G G+I+ Sbjct: 350 I----VVGSGVIT 358 >gi|291299863|ref|YP_003511141.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Stackebrandtia nassauensis DSM 44728] gi|290569083|gb|ADD42048.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Stackebrandtia nassauensis DSM 44728] Length = 359 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 145/366 (39%), Positives = 198/366 (54%), Gaps = 25/366 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84 MSGGVDS+V AA DG+DV GV L L +S + R G+ CC +D DARR D I Sbjct: 1 MSGGVDSAVAAARAVADGHDVTGVHLAL-SSNPQTFRSGARGCCTLEDSRDARRAADVIG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV+D ERFR V+ F + YAAG TP PC+ CN +KF+ +L LG D + TG Sbjct: 60 IPFYVWDMAERFREDVVDDFVAEYAAGRTPNPCLRCNEKIKFAAVLDRAVALGFDAVVTG 119 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 H+ +RL G ++ R +DL +DQSY L QL FPLGD K+ VR A Sbjct: 120 HH--ARLADG-------VLRRSVDLGKDQSYVLAVLNAAQLSRAVFPLGDSTKDEVRAEA 170 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVH-LNGQILGRHNGIINY 262 L +ADK DS DICF+ G D +N + + GDIV +G++LG H+G + Sbjct: 171 ARRDLAVADKPDSHDICFIADG---DTQGFLNQRLGSKTGDIVDAASGEVLGSHSGAHQF 227 Query: 263 TIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 TIGQR GLG+ A G+P +V+ + + V VGPRE+L+VH ++ WL DG+ + Sbjct: 228 TIGQRHGLGIGRPAADGKPRYVLSITPVDNTVKVGPREALDVHVVHADRPVWL-DGVERE 286 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 F+C V++R+ + V + D + GVA+GQA V Y D VL Sbjct: 287 GP---FECQVQLRAHGEVHDATVTSDGDTITARLHSPAKGVAAGQALVVYQPDPEGDIVL 343 Query: 379 GGGIIS 384 I+ Sbjct: 344 ASATIA 349 >gi|114566016|ref|YP_753170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318873|sp|Q0AZQ5|MNMA_SYNWW RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|114336951|gb|ABI67799.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 338 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 133/364 (36%), Positives = 206/364 (56%), Gaps = 28/364 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+V V MSGG+DS+V A LL+ GY+V G+T+ ++ R+A ++ A R+ Sbjct: 1 MKVAVLMSGGIDSTVSALLLREQGYEVTGLTM-VHLEREAGEK------------AARIA 47 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + H V D E F++AV+ F Y G TP PCV CN +KF LL LGAD Sbjct: 48 NELQIEHKVVDLREPFQSAVVDYFCREYEQGHTPNPCVKCNEEIKFGLLLKAALDLGADK 107 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A+GHY +R+ D + R+M + +D +DQSYFL+ QQQL L FPLG +KE V Sbjct: 108 VASGHY--ARIDYDDKSQCYRLM-KGVDPRKDQSYFLYRLKQQQLSRLIFPLGGYRKEEV 164 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++AR L +A++ +SQ++CF+ G Y + + R + EG + G+ILGRH GI Sbjct: 165 REMARRYHLQLAEEKESQEVCFI-PGDYREFI-RPHVSYK-EGSFLDRTGKILGRHRGIP 221 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQRRGL V+ G PL+V+ +D +++++G E L + ++ +++ FE + Sbjct: 222 FYTIGQRRGLAVSAGRPLYVLKIDPEKNQILLGENEVLFSKLLRFKQNHFICSQDFELLI 281 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLG 379 K KIR + + +D ++ + F++++ GQ+ V+Y D VLG Sbjct: 282 ----KVKAKIRYAARESEAILHCIEDDIWELVFDEAQRAATPGQSVVYYQGDY----VLG 333 Query: 380 GGII 383 GG I Sbjct: 334 GGTI 337 >gi|163942146|ref|YP_001647030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus weihenstephanensis KBAB4] gi|205812536|sp|A9VIM2|MNMA_BACWK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|163864343|gb|ABY45402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus weihenstephanensis KBAB4] Length = 371 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 140/377 (37%), Positives = 201/377 (53%), Gaps = 27/377 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P++ RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ A+ G C A +D Sbjct: 1 MNKLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDAN---GVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 118 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A E GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 173 ELKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 288 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 + W+ + E F C K R Q V VQ D+ V + ++ + GQA V Sbjct: 289 VGWVSNKAKEKE----FTCTAKFRYRQADNKVTVQIVDENTVRILCDEPIRAITPGQAVV 344 Query: 367 FYTSDSNEARVLGGGII 383 FY D LGG I Sbjct: 345 FYDGD----ECLGGATI 357 >gi|229013614|ref|ZP_04170745.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus mycoides DSM 2048] gi|229062091|ref|ZP_04199416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH603] gi|229169139|ref|ZP_04296854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH621] gi|228614367|gb|EEK71477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH621] gi|228717243|gb|EEL68918.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH603] gi|228747673|gb|EEL97545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus mycoides DSM 2048] Length = 376 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 140/377 (37%), Positives = 201/377 (53%), Gaps = 27/377 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P++ RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ A+ G C A +D Sbjct: 6 MNKLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDAN---GVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A E GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 178 ELKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 + W+ + E F C K R Q V VQ D+ V + ++ + GQA V Sbjct: 294 VGWVSNKAKEKE----FTCTAKFRYRQADNKVTVQIVDENTVRILCDEPIRAITPGQAVV 349 Query: 367 FYTSDSNEARVLGGGII 383 FY D LGG I Sbjct: 350 FYDGD----ECLGGATI 362 >gi|325479285|gb|EGC82381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaerococcus prevotii ACS-065-V-Col13] Length = 367 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 136/373 (36%), Positives = 205/373 (54%), Gaps = 24/373 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K KD +VVV +SGGVDSSV A LLK +GYDV+G+ ++ ++ + G C A D D Sbjct: 2 KEKKDTKVVVGISGGVDSSVAALLLKEEGYDVVGIFMKNWDD---TDENGVCTAEVDYED 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A V + I + +Y ++E+ + + V F Y G TP P + CN+ +KF L + Sbjct: 59 AVAVSNQIGIPYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAKS 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY R+ D +M R +D +DQ+YFL +Q+Q+ D+ FP+G+ Sbjct: 119 LGADYVATGHYARA-----DRSNGETVMLRGVDNNKDQTYFLSQLSQEQIKDVLFPVGEF 173 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K+ VR++A + L ADK DS ICF+ + + + + N A G+IV G ILG+ Sbjct: 174 EKKEVREIAHKYNLATADKKDSTGICFIGERDFNEFLS--NYLPAQPGNIVDTEGHILGK 231 Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLD-KNSSRVIVGPRES--LEVHRIYLREINWL 311 H+G++ +TIGQRRGLG+ GE FV D KN+ ++ R + L +++Y E + + Sbjct: 232 HDGLMFHTIGQRRGLGIGGEGEAWFVCGKDLKNNELIVCQGRNNPLLFSNKLYASEFSTI 291 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 D + F C K R Q + V+ +G V V ++K++ V GQA VFY Sbjct: 292 SD----KKCPEEFDCTAKFRYRQKDINAHVKVLGEGKVEVTYDKTKA-VTPGQAAVFYQG 346 Query: 371 DSNEARVLGGGII 383 + LG II Sbjct: 347 EV----CLGSAII 355 >gi|256824827|ref|YP_003148787.1| tRNA-specific 2-thiouridylase MnmA [Kytococcus sedentarius DSM 20547] gi|256688220|gb|ACV06022.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Kytococcus sedentarius DSM 20547] Length = 416 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 145/410 (35%), Positives = 204/410 (49%), Gaps = 45/410 (10%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQD 72 L + + +RVV AMSGGVDS+V AA + G++V GV L L S + + CC +D Sbjct: 8 LPTDGRRLRVVAAMSGGVDSAVAAARMIDAGHEVTGVHLALSQSAETLRESARGCCTLED 67 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DARRV D + + YV+D ERFR VI F + Y AG TP PC+ CN ++KF+ LL Sbjct: 68 AGDARRVADALGIPFYVWDMAERFRRDVIEDFVAEYEAGRTPNPCLRCNESIKFAALLDK 127 Query: 133 TRQLGADVLATGHYIRSRLYVGD---DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 LG D +ATGHY + + V D +G RR + R +D +DQSY L QL Sbjct: 128 AVALGFDAVATGHYAQV-VEVPDPAAEGGVRRELHRAVDAAKDQSYVLGVLDADQLARAH 186 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHL 248 FPLGD K +R+ A G +A K DS DICF+ G + +R+ G+IV Sbjct: 187 FPLGDTTKPQIREEAARRGFSVARKPDSHDICFIADGDTRAYLAERLG---EQPGNIVDP 243 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 G++LG H G YT+GQR+GLG+ + G P +V+ D +++V+VGP+E L V I Sbjct: 244 AGRVLGTHGGAHGYTVGQRKGLGLRVPASDGAPRYVLRTDPATNQVVVGPKEMLGVDVIR 303 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND------------------- 345 + W G + ++ ++ P V V D Sbjct: 304 ADHVRWCGPAPEGETR---LGAQIRAHGAEYPARVVVSGADASGSLLSGPGRSEPGDGEI 360 Query: 346 ------DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389 GV V ++ GVA GQ+ V Y + RV+G I+ + RS Sbjct: 361 AATAGHQGVTVFLDELVRGVAPGQSVVLY----DGTRVVGSATITATDRS 406 >gi|241667518|ref|ZP_04755096.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876064|ref|ZP_05248774.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842085|gb|EET20499.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 359 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 135/374 (36%), Positives = 208/374 (55%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +++V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ Sbjct: 2 QNKKIIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F + Y AG TP P + CN+ +KF LS LG Sbjct: 59 VCDSIGIPFKKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R++ V DDG + + + +D +DQ+YFL+ Q+QL FP+GD++K Sbjct: 119 DYIATGHYARTK--VADDGSVQ--LVKGLDDSKDQTYFLYTLGQEQLKQTMFPIGDIEKS 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ D + + A +G+I NG +G H+G Sbjct: 175 RVREIAKENNLVTFDKKDSTGICFIGERKFKDFLSKFLP--AQKGEIHDENGIKIGMHDG 232 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLREIN--W 310 ++ YTIGQR+GLG+ + P F D +N+ + V + + + L+ I+ W Sbjct: 233 LMYYTIGQRQGLGIGGVKNRPEIPWFAAQKDLENNVLIAVQGHDHPMLFKDTLQAIDLSW 292 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + A D F+C K+R Q V+ N+DG V V F++ + + GQ+ VFY Sbjct: 293 VAGS----APADSFRCSAKVRYRQKDQSCSVEVNNDGSVNVVFDEPQRAITPGQSVVFYD 348 Query: 370 SDSNEARVLGGGII 383 +D LGGGII Sbjct: 349 NDV----CLGGGII 358 >gi|310778027|ref|YP_003966360.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ilyobacter polytropus DSM 2926] gi|309747350|gb|ADO82012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ilyobacter polytropus DSM 2926] Length = 356 Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 130/363 (35%), Positives = 200/363 (55%), Gaps = 13/363 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ-LYNSRKASKRKGSCCAGQDVYDARRVC 80 +VVV MSGGVDSSV A LLK +GY+VIGVTL+ L + + +CC+ D+YDA+ C Sbjct: 4 KVVVGMSGGVDSSVAAYLLKEEGYEVIGVTLKHLSDEDSENTNTKTCCSLDDIYDAKMAC 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + HYV D E F+ VI F Y+ G TP PCV C+ +K L +LGAD Sbjct: 64 FKLGIPHYVVDAVEPFKKDVIDYFIGEYSKGITPSPCVVCDEKIKIKKLAETADKLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ++TGHY Y + G ++ + +DQ+Y L+ + L + FPL + +K+ V Sbjct: 124 ISTGHYCDVS-YSQELG--SHLLKLSKNSAKDQTYMLYRIGENILKRMLFPLKNFEKKKV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A+E G+ + DK DSQ ICF +G Y +++KRI G+ + +G ILG+H G Sbjct: 181 RGIAKEAGISVHDKKDSQGICFAPEG-YKELLKRILGEKIKPGNFITRDGHILGQHEGYQ 239 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQRRGLG+ + + F+ +D + + +I+G E L + L + +L D Sbjct: 240 LYTIGQRRGLGINLSKVYFITGIDSDKNEIILGDFEELMKKEVELTDTVFLAD----IEK 295 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 ++ K F + R S +P +++ D+ ++ +++ + GQ V Y D V+GG Sbjct: 296 LEKIKLFGRPRFSSIGLPGRLKKIDNRIFFIYDEENAKNSPGQHMVIYYKD----LVVGG 351 Query: 381 GII 383 G I Sbjct: 352 GKI 354 >gi|205822051|sp|A4FMT5|MNMA_SACEN RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 362 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 141/375 (37%), Positives = 199/375 (53%), Gaps = 21/375 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G++V+GV L L +++ + R G+ CC +D +DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVEAGHEVVGVHLAL-SAKPGTLRTGARGCCTIEDSHDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ ERF VI F YAAG TP PC+ CN +KF LL LG Sbjct: 60 AADILGIPFYVWDFAERFTEEVIETFVGEYAAGRTPNPCLTCNEKIKFEALLEKAMALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGHY +RL V +DG ++ R D +DQSY L + T +QL FPLGD K Sbjct: 120 DAVCTGHY--ARLTV-EDGV--PVLRRSRDEGKDQSYVLASLTAEQLGHSMFPLGDSLKS 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHL-NGQILGRH 256 VR A E GL +A K DS DICF+ G D K + + + + G +V G +LG H Sbjct: 175 QVRQEAAERGLAVAKKPDSHDICFIPDG---DTKKFLESKLGQKPGQLVDAETGAVLGEH 231 Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G+ +T+GQR+GLG+ G P +V+ L+ S V VG + L V I + W Sbjct: 232 TGVHGFTVGQRKGLGIDAPAPDGRPRYVLSLEPVSGTVKVGSADHLGVTEIDAKRPIWPS 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + +C V++R+ + D G+ + + GVA GQA V Y + Sbjct: 292 QRELDGPT----ECVVQVRAHGGTADAVAEVADGGMSIRLRRPLRGVAPGQAVVLYRPEE 347 Query: 373 NEARVLGGGIISGSK 387 VLG +I+ ++ Sbjct: 348 EGDLVLGSALIAATR 362 >gi|170079302|ref|YP_001735940.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. PCC 7002] gi|169886971|gb|ACB00685.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. PCC 7002] Length = 318 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 127/327 (38%), Positives = 179/327 (54%), Gaps = 19/327 (5%) Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 K KG CC+ + + DA +C+ + + H++ D + F+ ++ S Y G TPLPC CN Sbjct: 2 KGKGQCCS-EGMVDAADICEQLGIPHHIVDSRDLFQKYIVDYVVSGYEVGVTPLPCSQCN 60 Query: 122 RTVKFSDLLSVTR-QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 R VKF +L + +LG D +ATGHY R R +D R + R +D +DQSYFL+ Sbjct: 61 RMVKFGPMLQWAKAELGIDQIATGHYARIRY---NDQTGRYELLRAVDRHKDQSYFLYDL 117 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV--KRINAG 238 TQ+ L FPLG+M K R +A EM L A K +SQD+C ++ K I Sbjct: 118 TQEMLAGTLFPLGEMTKGETRQIAAEMQLSTAKKPESQDLCLIEAHGSMKTFLDKYIEQ- 176 Query: 239 IALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL 298 EG+IV L+G++LG H GI +YTIGQR+GLG+A EPL+VV LD +RV+V R+ Sbjct: 177 --REGEIVDLDGKVLGHHTGIHHYTIGQRKGLGIAAPEPLYVVKLDNVMNRVVVSTRDRA 234 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEV 357 ++ +NWL + + V++R VPV V D + + FE+ + Sbjct: 235 GQSECTVQRMNWLA----LPGITSPIRAEVQVRYRSGAVPVTVIPLEGDRLKLVFEEPQF 290 Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384 G+ GQA V Y D RVLGGGII Sbjct: 291 GITPGQAAVLYDGD----RVLGGGIIE 313 >gi|172058087|ref|YP_001814547.1| tRNA-specific 2-thiouridylase MnmA [Exiguobacterium sibiricum 255-15] gi|205816866|sp|B1YJE9|MNMA_EXIS2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|171990608|gb|ACB61530.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Exiguobacterium sibiricum 255-15] Length = 374 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 135/379 (35%), Positives = 202/379 (53%), Gaps = 23/379 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K P++ VVV MSGGVDSSV A LLK+ GY+VIG+ ++ ++ + G C A +D D Sbjct: 6 KAPEETTVVVGMSGGVDSSVTAYLLKQQGYNVIGIFMKNWDD---TDENGFCTATEDYED 62 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 V + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L + Sbjct: 63 VIAVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLDHAMR 122 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY R+ V +DG+ + + R +D +DQ+YFL +Q Q+ FP+G M Sbjct: 123 LGADFVATGHYARA---VYEDGEHK--LLRGVDTNKDQTYFLNQLSQDQIAKAMFPIGHM 177 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E L A K DS ICF+ + + + + A G++ L+G+ +GR Sbjct: 178 EKSEVRKIAEEANLATAKKKDSTGICFIGERNFKQFLSQYLP--AQPGEMRTLDGKTMGR 235 Query: 256 HNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 H+G++ YT+GQR GLG+ GEP FVV + + + V E L +Y +I+W Sbjct: 236 HDGLMYYTMGQRHGLGIGGDGEPWFVVGKNLQDNILFVEQGFHNELLYSEGLYASDISWT 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 F+C K R Q PV V+ D G + V F++ + + GQA VFY Sbjct: 296 A----TMPAGTEFRCTAKFRYRQTDTPVTVRVLDGGRLDVAFDERQRAITPGQAVVFYDG 351 Query: 371 DSNEARVLGGGIISGSKRS 389 D LGG I + ++ Sbjct: 352 DV----CLGGATIDDAYKA 366 >gi|284992470|ref|YP_003411024.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Geodermatophilus obscurus DSM 43160] gi|284065715|gb|ADB76653.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Geodermatophilus obscurus DSM 43160] Length = 357 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 145/370 (39%), Positives = 200/370 (54%), Gaps = 24/370 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AAL G+DV GV L L R+ + R G+ CC+ +D +DARR Sbjct: 1 MRVLAAMSGGVDSAVAAALAVDAGHDVTGVHLALSPDRQ-TLRSGARGCCSVEDAHDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D ERF V+ F + YAAG TP PC+ CN +KFS +L R LG Sbjct: 60 VADELGIPFYVWDLAERFTEDVVEDFVAEYAAGRTPNPCLRCNEKIKFSAVLDRARALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGH+ +RL G+ + R +D ++DQSY L T QL FPLG M K+ Sbjct: 120 DAVVTGHH--ARLAGGE-------LRRSVDADKDQSYVLAVLTADQLAGAVFPLGSMTKQ 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNGQILGRHN 257 VR++A E G +A K+DS DICF+ G + R A G +V G +G H Sbjct: 171 RVREIATERGFAVATKADSHDICFIPDGDTRGFLARRLG--AQPGPVVDAATGATVGEHA 228 Query: 258 GIINYTIGQRRGLGVAMGE--PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G +T+GQRRGLGVA+G+ P +V+ ++ + V +G + V + W G Sbjct: 229 GAYGFTVGQRRGLGVAVGDSRPRYVLGIEPVTRTVTIGTADLAGVGEVRTARPTWTG--- 285 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNE 374 A F V++R+ PVP V DD G+ + + GVA GQ+ V Y D+ Sbjct: 286 --TAPALPFAAEVQLRAHGTPVPCEVTAGDDGGLRLLLGSHQRGVAPGQSAVLYAPDAER 343 Query: 375 A-RVLGGGII 383 VLG G + Sbjct: 344 GDLVLGQGTV 353 >gi|229098868|ref|ZP_04229804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Rock3-29] gi|229105030|ref|ZP_04235684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Rock3-28] gi|229117893|ref|ZP_04247255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Rock1-3] gi|228665550|gb|EEL21030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Rock1-3] gi|228678407|gb|EEL32630.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Rock3-28] gi|228684541|gb|EEL38483.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Rock3-29] Length = 376 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 140/377 (37%), Positives = 200/377 (53%), Gaps = 27/377 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 6 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A E GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 178 ELKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKDNILYVDQGFHNELLYGDEVIATN 293 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 + W+ + E FKC K R Q V VQ D+ V + ++ + GQA V Sbjct: 294 VGWVSNKAKETE----FKCTAKFRYRQADNKVTVQIVDENTVRILCDEPIRAITPGQAVV 349 Query: 367 FYTSDSNEARVLGGGII 383 FY D LGG I Sbjct: 350 FYDGD----ECLGGATI 362 >gi|87162110|ref|YP_494273.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87128084|gb|ABD22598.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|298694901|gb|ADI98123.1| 5-methylaminomethyl-2-thiouridylate- methyltransferase tRNA [Staphylococcus aureus subsp. aureus ED133] Length = 361 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 136/374 (36%), Positives = 199/374 (53%), Gaps = 44/374 (11%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D D VC+ I + Sbjct: 1 MSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIEVCNQIGIP 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 +Y ++E+ + + V F Y G TP P V CN+ +KF L LGAD +ATGHY Sbjct: 58 YYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGADYVATGHY 117 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 +R++ +DG M R +D +DQ+YFL +QQQL + FP+GD++K VR +A E Sbjct: 118 --ARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKSEVRRIAEE 173 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 GL A K DS ICF+ + + + + A GD++ L+G+ +G+H+G++ YTIGQ Sbjct: 174 QGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKHSGLMYYTIGQ 231 Query: 267 RRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV---- 321 R GLG+ G+P FVV ++L+ + +Y+ E + D L+ D ++ Sbjct: 232 RHGLGIGGDGDPWFVV-------------GKNLKDNVLYV-EQGFHHDALYSDYLIASDY 277 Query: 322 -----------DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 GF+C K R Q VFV+R ND + V F + + GQA VFY Sbjct: 278 SFVNPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITPGQAVVFYQ 337 Query: 370 SDSNEARVLGGGII 383 D LGG I Sbjct: 338 GDV----CLGGATI 347 >gi|313623686|gb|EFR93838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria innocua FSL J1-023] Length = 371 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 140/385 (36%), Positives = 200/385 (51%), Gaps = 43/385 (11%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + N D+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L Sbjct: 58 EDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + VGD+ + + R +D +DQ+YFL +Q QL + FPLG Sbjct: 118 ESLGADYVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K VR++A + GL A+K DS ICF+ + + + A GD+ L+G++L Sbjct: 173 GMEKTEVREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGDMRTLDGEVL 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G+H+G++ YTIGQR GLG+ GEP FVV D ++ + V E + Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKNNVLFV--------------EQGFHH 276 Query: 313 DGLFEDAVV-------------DGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVG 358 D L+ D+++ F+C K R Q V V +DG V F Sbjct: 277 DSLYSDSLIATDISFTTNSEKPKTFECTAKFRYRQTDTKVTVNMREDGTAEVVFADPVRA 336 Query: 359 VASGQACVFYTSDSNEARVLGGGII 383 + GQA VFY D LGGG I Sbjct: 337 ITPGQAVVFYDGDI----CLGGGTI 357 >gi|217964341|ref|YP_002350019.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes HCC23] gi|254811452|sp|B8DDZ8|MNMA_LISMH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|217333611|gb|ACK39405.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes HCC23] gi|307571093|emb|CAR84272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes L99] Length = 371 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 140/383 (36%), Positives = 203/383 (53%), Gaps = 23/383 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + N D+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L Sbjct: 58 DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + VGD+ + + R +D +DQ+YFL +Q QL + FPLG Sbjct: 118 ESLGADFVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K VR++A++ GL A+K DS ICF+ + + + A G++ LNG++L Sbjct: 173 AMEKTEVREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLNGEVL 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP FVV D + + V E+L + +I+ Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368 + + A +C K R Q V V +DG V F + GQA VFY Sbjct: 291 FTTNA----AKPKTIECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDA 391 D LGGG I ++ A Sbjct: 347 DGDI----CLGGGTIDTVWKNGA 365 >gi|16800615|ref|NP_470883.1| tRNA-specific 2-thiouridylase MnmA [Listeria innocua Clip11262] gi|24638323|sp|Q92BK1|MNMA_LISIN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|16414020|emb|CAC96778.1| lin1547 [Listeria innocua Clip11262] Length = 371 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 141/385 (36%), Positives = 199/385 (51%), Gaps = 43/385 (11%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + N D+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L Sbjct: 58 DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + VGD+ + + R +D +DQ+YFL +Q QL + FPLG Sbjct: 118 ESLGADYVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K VR++A + GL A+K DS ICF+ + + + A GD+ LNG++L Sbjct: 173 GMEKTEVREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGDMRTLNGEVL 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G+H+G++ YTIGQR GLG+ GEP FVV D ++ + V E + Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKNNVLFV--------------EQGFHH 276 Query: 313 DGLFEDAVV-------------DGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVG 358 D L+ D+++ F C K R Q V V +DG V F Sbjct: 277 DSLYSDSLIATDISFTTNSEKPKTFVCTAKFRYRQTDTKVTVNMREDGTAEVVFADPVRA 336 Query: 359 VASGQACVFYTSDSNEARVLGGGII 383 + GQA VFY D LGGG I Sbjct: 337 ITPGQAVVFYDGDI----CLGGGTI 357 >gi|313680731|ref|YP_004058470.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oceanithermus profundus DSM 14977] gi|313153446|gb|ADR37297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oceanithermus profundus DSM 14977] Length = 369 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 136/377 (36%), Positives = 201/377 (53%), Gaps = 21/377 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR---KGSCCAGQDVYD 75 K RV+VAMSGGVDSSV AALL GYDV+G ++ ++ + ++ + SCC + Sbjct: 2 KKPRVLVAMSGGVDSSVAAALLVEQGYDVVGAMMKFWSDEELAESCNSESSCCTPTAALE 61 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A V + + + DY E F ++ PF YAAG TP PCV CN VKF LL R Sbjct: 62 AGWVARQLGIPFELLDYRETFDERIVTPFLEGYAAGRTPNPCVWCNTDVKFDALLEHARA 121 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 +GA+ +ATGHY+R +G + R D +DQ+YFL+ T + L L FP+G + Sbjct: 122 IGAEYVATGHYVRR-----VEGPAGVELWRGGDAAKDQTYFLWGTPRAALPHLLFPVGHL 176 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254 +K +VR LA GL A K +SQ+ICFV+ + K I + G +V L +G+++G Sbjct: 177 EKPAVRRLAEARGLITARKPESQNICFVRGSLRDFLAKHIPSE---PGPLVDLESGEVIG 233 Query: 255 RHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G YT+GQR+GLG+ +VV + ++ V+VGPR ++E + +N L D Sbjct: 234 EHAGARFYTVGQRKGLGLWKSHLERYVVEVRPETNEVVVGPRAAVEWWGLEASGLNLLLD 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDS 372 + D + V+ R+ V G + + FE+ + VA GQ+ V Y D Sbjct: 294 ---PAGLPDRIEAMVRYRTRPVGARVLELDPTAGRFRLRFERPQFAVAPGQSVVLYAGD- 349 Query: 373 NEARVLGGGIISGSKRS 389 R+LGGG I ++ + Sbjct: 350 ---RLLGGGFIERAREN 363 >gi|167626941|ref|YP_001677441.1| tRNA-specific 2-thiouridylase MnmA [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189040504|sp|B0TW32|MNMA_FRAP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|167596942|gb|ABZ86940.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 359 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 135/374 (36%), Positives = 208/374 (55%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +++V +SGGVDSSV A LLK+ GYDV GV ++ + + C A Q + DA+ Sbjct: 2 QNNKIIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQHIADAQA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F + Y AG TP P + CN+ +KF LS LG Sbjct: 59 VCDSIGIPFKKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R++ V DDG + + + +D +DQ+YFL+ Q+QL FP+GD++K Sbjct: 119 DYIATGHYARTK--VIDDGSVQ--LVKGLDDSKDQTYFLYTLGQEQLKQTMFPIGDIEKS 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ D + + A +G+I NG +G H+G Sbjct: 175 RVREIAKENNLVTFDKKDSTGICFIGERKFKDFLSKFLP--AQKGEIHDENGIKIGMHDG 232 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLREIN--W 310 ++ YTIGQR+GLG+ + P F D +N+ + V + + + L+ I+ W Sbjct: 233 LMYYTIGQRQGLGIGGVKNRPEIPWFAAQKDLENNVLIAVQGHDHPMLFKDTLQAIDLSW 292 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + A D F+C K+R Q P V+ N+DG V V F++ + + GQ+ VFY Sbjct: 293 VAGS----APADSFRCSAKVRYRQKDQPCSVEVNNDGSVNVVFDEPQRAITPGQSVVFYD 348 Query: 370 SDSNEARVLGGGII 383 +D LGGGII Sbjct: 349 NDV----CLGGGII 358 >gi|154509242|ref|ZP_02044884.1| hypothetical protein ACTODO_01767 [Actinomyces odontolyticus ATCC 17982] gi|153798876|gb|EDN81296.1| hypothetical protein ACTODO_01767 [Actinomyces odontolyticus ATCC 17982] Length = 363 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 148/378 (39%), Positives = 202/378 (53%), Gaps = 25/378 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ A+SGGVDS+V AA G+DV+GV + L +S+ R GS CC+ +D DA R Sbjct: 1 MRVLAALSGGVDSAVAAAKAVEAGHDVVGVHMAL-SSQPQECRIGSRGCCSIEDAGDAAR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + I + YV+D + F VI F + Y AG TP PCV CN VKF +L + R LG Sbjct: 60 AAEIIGIPFYVWDLAQEFEQTVITDFVAQYKAGRTPNPCVRCNEFVKFRELATRARALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197 D + TGHY DG + R D +DQSY L ++L + PLGD K Sbjct: 120 DAVCTGHYAAIV-----DGAAGPELHRGADNLKDQSYVLAVMGPEELHRVVLPLGDAPNK 174 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR A +GL +++K DS DICF+ G + R + G A EG+IV +G++LGRH Sbjct: 175 AWVRSEAERLGLGVSNKPDSYDICFIPDGDTQGFL-RAHLGAA-EGEIVSPDGEVLGRHE 232 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G NYT+GQR+GLG+ G P +V+ +++V+VG E L + RI + WL Sbjct: 233 GYWNYTVGQRKGLGIGAPAPDGRPRYVLETRPETNQVVVGASELLSISRITATDAVWLAS 292 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDG--VYVDFEKSEVGVASGQACVFYTS 370 +D D FV++R+ PVPV + R+ D + V S GVA GQ+ V Y Sbjct: 293 ---DDDGSDATDLFVQLRAHGTPVPVASLTRDLDAGTISVVLASSARGVARGQSMVVYRG 349 Query: 371 DSNEARVLGGGIISGSKR 388 RVLG G I + R Sbjct: 350 ----TRVLGEGTIDATGR 363 >gi|297569866|ref|YP_003691210.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfurivibrio alkaliphilus AHT2] gi|296925781|gb|ADH86591.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfurivibrio alkaliphilus AHT2] Length = 358 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 141/372 (37%), Positives = 194/372 (52%), Gaps = 37/372 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR--- 78 RV VAMSGGVDSSV AAL+ + G +V GV ++L A + D +R Sbjct: 12 RVAVAMSGGVDSSVTAALMLQAGAEVEGVFMRL--------------AQPGIEDHQRRVE 57 Query: 79 -VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 V + + V D E F V+ PF ++Y AG TP PCV CNR +KF LL G Sbjct: 58 GVAAHLGIPLTVLDLAEPFGQKVLQPFVAAYLAGLTPNPCVFCNRQIKFGLLLEAMLSRG 117 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D LATGHY+R + D R++CR +D +DQSYFL ++ L + FPLG+ +K Sbjct: 118 VDFLATGHYVRLTPALPLD----RLLCRGLDPRKDQSYFLCRLKREVLPRILFPLGEKRK 173 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-----KRINAGIALEGDIVHLNGQI 252 V +LA +GL +SQD+CF+ + D + + A G IV +G+ Sbjct: 174 TEVYELAASLGLSGRHGPESQDVCFLGEQTVADFLAAYAGQEAPAEGPAGGLIVTTDGRE 233 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +GRH G+ YTIGQRRGLG+ P +VV LD S+RV+VG E L +I L +NWL Sbjct: 234 VGRHRGVFRYTIGQRRGLGIPDDTPYYVVALDAQSNRVVVGKPEDLLRRQIRLGALNWLI 293 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSD 371 D A + V++R P P + DG + +DF++ + A GQ FY D Sbjct: 294 DPPRLPA-----RFSVQLRHRHRPAPALLTPAADGTFTLDFDQPQRAPAPGQYAAFYQED 348 Query: 372 SNEARVLGGGII 383 ++LGGG I Sbjct: 349 ----QLLGGGEI 356 >gi|193215134|ref|YP_001996333.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chloroherpeton thalassium ATCC 35110] gi|193088611|gb|ACF13886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chloroherpeton thalassium ATCC 35110] Length = 365 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 130/370 (35%), Positives = 195/370 (52%), Gaps = 21/370 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY----NSRKASKRKGSCCAGQDVYDAR 77 +V+V MSGGVDSSV A LL +G++VIGVTL + + S+ + + + +A+ Sbjct: 4 KVIVGMSGGVDSSVAACLLAEEGFEVIGVTLHTWEKLPKTNNDSEEQNALSPTHEHEEAK 63 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 ++ H+ D+ E F+ VI F S Y G TP PCV CN +K+ LL ++ G Sbjct: 64 QIAAAKGFLHFTIDFREAFQREVIDYFKSEYLLGRTPNPCVICNTKIKWQALLQEAKRHG 123 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A +ATGHY R V R R++ + D +DQSY L+ +Q+ L RFPL D K Sbjct: 124 AAYIATGHYAR----VAKQEGRFRLL-QGCDASKDQSYVLWGLSQEILEKARFPLADYTK 178 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILG 254 + VR LAR+ L +A+K +SQ+ICF+ Y +K +A + G I+ N LG Sbjct: 179 DEVRALARKYDLPVAEKDESQEICFIPDNNYERFLKDALPNLAEKIAGGKILDTNQNELG 238 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +H G YTIGQRRGLG++ P++V + + ++VG ++ L + ++NW+ Sbjct: 239 KHRGYPFYTIGQRRGLGISTPAPVYVTDIHAEDNTIVVGSKDDLLHSGLIATDLNWIAFS 298 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 ++ F+ KIR P V + G V V FE + + GQA VFY+ + Sbjct: 299 KLQEP----FQAEAKIRYKDTAEPCVVTPLETGCVQVTFETPKRAITPGQAVVFYSGE-- 352 Query: 374 EARVLGGGII 383 +LGGG I Sbjct: 353 --ELLGGGFI 360 >gi|239616529|ref|YP_002939851.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Kosmotoga olearia TBF 19.5.1] gi|239505360|gb|ACR78847.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Kosmotoga olearia TBF 19.5.1] Length = 359 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 129/368 (35%), Positives = 206/368 (55%), Gaps = 19/368 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ-LYNS--RKASKRKGSCCAGQDVYDAR 77 +++ VA+SGGVDS+V AA+LK +G+DV+G ++ L ++ ++K CC+ D D Sbjct: 3 VKIGVALSGGVDSAVAAAILKAEGHDVVGYHMKNLPDTLFELVPEKKKVCCSPSDTIDTH 62 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 ++ + + + + FR +I F Y AG+TP PCV CN +KF L+ G Sbjct: 63 KIAAKLGIELRIVKLNDIFRKEIIDYFIREYQAGKTPNPCVRCNDLMKFGALMEKAFGDG 122 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 + A+GHY R + + K + R + +DQ+YFL +++L + FP G+M K Sbjct: 123 MEKFASGHYAR----IVEHPKYGLSLARGVAKYKDQAYFLSRIKRRKLPYIIFPNGNMTK 178 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRH 256 E +RD+ARE+GL + K +SQ++CF+ Y + + GI ++ G+IV L G +LGRH Sbjct: 179 EEIRDIARELGLPVHSKKESQELCFIPDNDYRRFL--LEEGIEIKPGEIVDLEGNVLGRH 236 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G+ YT+GQRRGLG+ + L+VV LD + +RV+VGP+E++ + E NWL D L Sbjct: 237 KGLAFYTVGQRRGLGIVSDKKLYVVALDADKNRVVVGPKEAVMRKKFRAIEPNWLAD-LD 295 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 E + +C +IRS+ ++ + V V+F+K + + GQ VFY + Sbjct: 296 EKEL----RCQCQIRSNMKAQGATIRIFSNIVEVEFDKPALAITPGQLAVFYDGNI---- 347 Query: 377 VLGGGIIS 384 VLG I Sbjct: 348 VLGSAFIE 355 >gi|33866156|ref|NP_897715.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. WH 8102] gi|81572928|sp|Q7TTU4|MNMA_SYNPX RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|33639131|emb|CAE08137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. WH 8102] Length = 396 Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 134/383 (34%), Positives = 205/383 (53%), Gaps = 33/383 (8%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 L P + RV V +SGGVDSS+ AALL G++V G+TL L + KG+CCA + + Sbjct: 23 LRTWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMSG------KGACCA-EGL 75 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-V 132 DA +C+ + + H+V D + F+ ++ Y G TPLPC CNR+VKF +L Sbjct: 76 VDAAGICEQLGIPHHVVDTRDTFQREIVQRLVDGYREGITPLPCSQCNRSVKFGPMLDWA 135 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + G +ATGHY R R + G+ G+ + + R +D +DQSYFL+ Q+ L + FPL Sbjct: 136 AEERGLPRIATGHYARIR-HGGEQGRHQ--LLRGLDSRKDQSYFLYDLPQEVLGRIVFPL 192 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQ 251 G++ K R A GL A+K +SQD+C + + ++A + +G+IV +G Sbjct: 193 GELTKADTRGEAARHGLRTAEKPESQDLCLADH--HGSMRAFLDAYLPPRQGEIVLSDGT 250 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 ++G H+GI ++TIGQR+GLGVA EPL V+ LD ++V+V PR + INW+ Sbjct: 251 VVGEHDGIEHFTIGQRKGLGVAWREPLHVIRLDPAMNQVVVAPRAEAGQRSCVVGAINWV 310 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPV-----PVFVQRNDDG------VYVDFEKSEVGVA 360 + + V++R +PV P+ D+ + F + + Sbjct: 311 SIAPLQQP----LELEVQVRYRSEPVAAQLTPIPHTPEDEARQRPHRCRLQFLDDQFSIT 366 Query: 361 SGQACVFYTSDSNEARVLGGGII 383 GQA VFY ++ VLGGG+I Sbjct: 367 PGQAAVFYRGET----VLGGGLI 385 >gi|229826315|ref|ZP_04452384.1| hypothetical protein GCWU000182_01687 [Abiotrophia defectiva ATCC 49176] gi|229789185|gb|EEP25299.1| hypothetical protein GCWU000182_01687 [Abiotrophia defectiva ATCC 49176] Length = 360 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 134/364 (36%), Positives = 195/364 (53%), Gaps = 11/364 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV A LLK+ GY+V GVT+ ++ G C Q DAR+V + Sbjct: 4 KVVVGLSGGVDSSVAAYLLKKQGYEVYGVTMDIWTEGAVDTVNGGCLGSQAKEDARKVAE 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 T+++ + V D +FR V+ FA SY GETP PC CNR VK+ L GA+ + Sbjct: 64 TLDIPYKVVDVRGKFRENVMNYFADSYKNGETPNPCTLCNRRVKWEALFKGAELFGAEYV 123 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + R R + +DQ+Y L TQ+QL P+GD +K VR Sbjct: 124 ATGHYAKIRKLANG----RYTIANSYTAAKDQTYALCNLTQEQLRRTLLPIGDYEKSEVR 179 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A E G++IA K DS +ICF+ G Y +++ A +G+ V ++G +LG H GI++ Sbjct: 180 KIAAEAGIEIAAKPDSMEICFIPDGDYAGYLEKEYGIAAHKGNFVDVDGNVLGEHRGIVH 239 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQR+GLG+A G+P+FV + ++ V++ E L R+ IN++ + E Sbjct: 240 YTIGQRKGLGIAFGKPMFVKEIRPETNEVVLSDNEGLFTERVVAERINFMAETKEEIEAS 299 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR--VLG 379 D KIR + + +D + +F + + A GQ V Y NEA V G Sbjct: 300 DKI-YLAKIRYNHKGGECKLSFEEDRIAAEFLEPQRASAPGQTLVVY----NEAGEVVCG 354 Query: 380 GGII 383 G I+ Sbjct: 355 GRIV 358 >gi|315635921|ref|ZP_07891183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arcobacter butzleri JV22] gi|315479900|gb|EFU70571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arcobacter butzleri JV22] Length = 345 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 132/370 (35%), Positives = 198/370 (53%), Gaps = 33/370 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGG+DSSV A +L+ +GY+V G+ L+L+N K ++ V Sbjct: 5 KVMVGMSGGIDSSVTAYMLQNEGYEVEGIYLKLHNRTDGYHEK-------NLGYIEDVAK 57 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +N+ +++ D + F V F SY +G TP PCV CN+ +KF +L ++ GAD L Sbjct: 58 FLNIKYHILDLADEFSKEVYDYFVDSYLSGTTPNPCVKCNKQIKFGAMLDFAKKHGADFL 117 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY ++ DGK D +DQSYFL ++ L + FPL KKE + Sbjct: 118 ATGHYAKT------DGK---FFYEADDKTKDQSYFLSQVDKEALKYMMFPLSSYKKEDIV 168 Query: 202 DLAREMGL---DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 ++ + I +KS+SQ+ICFV+ Y DVVKR +A I EGD++ NG+++G+H G Sbjct: 169 KFGAKLDVAYKKITEKSESQEICFVET-VYTDVVKR-HANIDQEGDVLDENGKVVGKHKG 226 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 +YTIG+RRG V EP FV L+ + ++VG +E+LEV+ + +N D Sbjct: 227 FAHYTIGKRRGFTVKGAQEPHFVTKLNPKDNTIVVGKKEALEVNEVIGNNLNMFIDDT-- 284 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 F C VK+R P VQ D+ + ++ GVA+GQ VFY + +V Sbjct: 285 -----KFSCNVKLRYRSVSTPCEVQIKDEKACITLKEPVFGVANGQLAVFY----DNQKV 335 Query: 378 LGGGIISGSK 387 +G I +K Sbjct: 336 IGSAWIESTK 345 >gi|169338047|ref|ZP_02621467.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum C str. Eklund] gi|169295231|gb|EDS77364.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum C str. Eklund] Length = 350 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 119/365 (32%), Positives = 204/365 (55%), Gaps = 27/365 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V V +SGGVDSSV A LLK GYD+IG+T+++ + S+ DA++V + Sbjct: 7 KVAVGLSGGVDSSVAAYLLKEKGYDLIGITMKVSSDLDVSE------------DAKKVAE 54 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +YV D E F+ VI FA Y G TP PC CN+ +KF +L ++LGAD + Sbjct: 55 KLDIPYYVIDLTEEFKKRVINSFAEEYLQGRTPNPCAVCNKYIKFGAMLEKAKELGADYI 114 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + G R ++ D ++DQ+Y ++ TQ L + P G+ K +R Sbjct: 115 ATGHYARIEEHNG-----RILVLNAKDDKKDQTYMFYSLTQDVLKHVLMPCGEYTKVQIR 169 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGII 260 ++A+ +G+++ +K +S DICF+ + ++++ ++ G+ V NG +LG+H G+I Sbjct: 170 EIAKNIGIEVHNKKESMDICFIPDNDHGKYIQQLECKDRIKPGNFVDENGNVLGKHKGLI 229 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQR+GLG+++G+P FV+ + + V++G E + + + +++N++ D++ Sbjct: 230 YYTIGQRKGLGLSLGKPGFVIDIIPERNEVVIGDEEEIFNNGLIAKDVNFIP----FDSL 285 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + + KIR S + D+G + F+ + + GQ VFY D ++G Sbjct: 286 ENTMEVEAKIRYSTTKSKATIIPYDNGKIKAMFKDKQRAITKGQRVVFYIED----MLVG 341 Query: 380 GGIIS 384 GG I Sbjct: 342 GGTIE 346 >gi|116872941|ref|YP_849722.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Listeria welshimeri serovar 6b str. SLCC5334] gi|123461086|sp|A0AIW1|MNMA_LISW6 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|116741819|emb|CAK20943.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 371 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 139/383 (36%), Positives = 204/383 (53%), Gaps = 23/383 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + N D+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L Sbjct: 58 DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLEEYKLGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + +GD+ + + R +D +DQ+YFL +Q QL + FPLG Sbjct: 118 ESLGADYVATGHYAQVKK-IGDEIE----LLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K VR++A + GL A+K DS ICF+ + + + A G++ L+G++L Sbjct: 173 GMEKTEVREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLDGEVL 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP FVV D ++ + V ESL + +I+ Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKANVLFVEQGFHHESLYSDSLIATDIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 + + F+C K R Q V V R+D V F + GQA VFY Sbjct: 291 FTTNA----EKPKTFECTAKFRYRQTDTKVTVHLRSDGTAEVVFADPVRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDA 391 D LGGG I +++A Sbjct: 347 DGDI----CLGGGTIDTVWKNEA 365 >gi|56963351|ref|YP_175082.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Bacillus clausii KSM-K16] gi|81366419|sp|Q5WHN4|MNMA_BACSK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|56909594|dbj|BAD64121.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Bacillus clausii KSM-K16] Length = 364 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 138/381 (36%), Positives = 207/381 (54%), Gaps = 23/381 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K +D RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ S G C A +D D Sbjct: 2 KKREDTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---SNDSGFCSATEDYED 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 RV + + +Y ++E+++ + V F Y AG TP P V CN+ +KF L+ Sbjct: 59 VERVAQQLGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLNHAIS 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY + + DG+ R I + D +DQ+YFL A +Q+QL + FPLG + Sbjct: 119 LGADYVATGHYAQLQEL---DGEYRLI--KGADANKDQTYFLNALSQKQLSKVMFPLGHL 173 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E L A K DS ICF+ + + + ++ A G + ++G G+ Sbjct: 174 QKAEVRKIAAEAELATATKKDSTGICFIGERDFKEFLQTFLP--AQPGRMETMDGIDKGQ 231 Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 H+G++ YT+GQR+GLG+ GEP FV+ D + +IVG L ++ ++NW+ Sbjct: 232 HDGLMYYTLGQRQGLGIGGAGEPWFVIDKDLERNVLIVGQGYHHPGLYSDGLWATDMNWI 291 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 ++ F C K R Q+ V V +DG ++ F++ + + GQA V Y Sbjct: 292 A----KEERTSPFTCKAKFRYRQEDQGVTVFPKEDGRAFIQFDQPQRAITPGQAVVLYEG 347 Query: 371 DSNEARVLGGGIISGSKRSDA 391 D R +GGG+I R +A Sbjct: 348 D----RCIGGGVIDKIHRENA 364 >gi|46907740|ref|YP_014129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes str. 4b F2365] gi|226224113|ref|YP_002758220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes Clip81459] gi|254824429|ref|ZP_05229430.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes FSL J1-194] gi|254852136|ref|ZP_05241484.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes FSL R2-503] gi|254931447|ref|ZP_05264806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes HPB2262] gi|254993966|ref|ZP_05276156.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL J2-064] gi|300764822|ref|ZP_07074812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes FSL N1-017] gi|67461977|sp|Q71ZF8|MNMA_LISMF RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|259495831|sp|C1KVF9|MNMA_LISMC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|46881009|gb|AAT04306.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes serotype 4b str. F2365] gi|225876575|emb|CAS05284.1| Putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605439|gb|EEW18047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes FSL R2-503] gi|293582998|gb|EFF95030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes HPB2262] gi|293593665|gb|EFG01426.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes FSL J1-194] gi|300514498|gb|EFK41555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes FSL N1-017] gi|328465550|gb|EGF36779.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes 1816] gi|328474873|gb|EGF45673.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes 220] Length = 371 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 139/383 (36%), Positives = 203/383 (53%), Gaps = 23/383 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + N D+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L Sbjct: 58 DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + VGD+ + + R +D +DQ+YFL +Q QL + FPLG Sbjct: 118 ESLGADYVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K VR++A++ GL A+K DS ICF+ + + + A G++ LNG++L Sbjct: 173 GMEKTEVREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLNGEVL 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP FVV D + + V E+L + +I+ Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368 + + + +C K R Q V V +DG V F + GQA VFY Sbjct: 291 FTTNAEKPKTI----ECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDA 391 D LGGG I ++ A Sbjct: 347 DGDI----CLGGGTIDTVWKNGA 365 >gi|215431975|ref|ZP_03429894.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium tuberculosis EAS054] gi|289755139|ref|ZP_06514517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU [Mycobacterium tuberculosis EAS054] gi|308375963|ref|ZP_07445668.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu007] gi|308377199|ref|ZP_07441475.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu008] gi|289695726|gb|EFD63155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU [Mycobacterium tuberculosis EAS054] gi|308344583|gb|EFP33434.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu007] gi|308348530|gb|EFP37381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu008] Length = 361 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 145/369 (39%), Positives = 200/369 (54%), Gaps = 26/369 (7%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84 MSGGVDSSV AA + G++V+GV + L ++ + R GS CC+ +D DARRV D + Sbjct: 1 MSGGVDSSVAAARMVDAGHEVVGVHMAL-STAPGTLRTGSRGCCSKEDAADARRVADVLG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV+D+ E+F+ VI F SSYA GETP PCV CN+ +KF+ L + LG D +ATG Sbjct: 60 IPFYVWDFAEKFKEDVINDFVSSYARGETPNPCVRCNQQIKFAALSARAVALGFDTVATG 119 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY R G R R R +D ++DQSY L T QQL FP+GD K +R A Sbjct: 120 HYARL------SGGRLR---RAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKRQIRAEA 170 Query: 205 REMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 GL +A+K DS DICF+ G K F + +RI G +V +G +L H+G+ + Sbjct: 171 ARRGLAVANKPDSHDICFIPSGNTKAF-LGERIG---VRRGVVVDADGVVLASHDGVHGF 226 Query: 263 TIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 TIGQRRGLG+A G P +V +D +++ V VG L+V + R + G Sbjct: 227 TIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTA-GAAPS 285 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 VD C V++R+ + V + D ++V GVA GQ V Y D VL Sbjct: 286 GPVD---CVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQTLVLYRPDPAGDEVL 342 Query: 379 GGGIISGSK 387 G I+G+ Sbjct: 343 GSATIAGAS 351 >gi|25027890|ref|NP_737944.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium efficiens YS-314] gi|30173439|sp|Q8FQ01|MNMA_COREF RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|23493173|dbj|BAC18144.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium efficiens YS-314] Length = 365 Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 144/377 (38%), Positives = 199/377 (52%), Gaps = 23/377 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRV 79 MRV+ AMSGGVDS+V A+ G++V+GV L L ++ + CC+ +D DARRV Sbjct: 1 MRVLAAMSGGVDSAVAASRAVAAGHEVVGVHLALSRDPQSVRESSRGCCSLEDSADARRV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + + YV+D+ +RF+ VI F SYA GETP PC+ CN +KF+ LL LG D Sbjct: 61 CDKLGIPFYVWDFSDRFKEDVIDDFIDSYAIGETPNPCLRCNEKIKFAALLERGIALGFD 120 Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + TGHY R ++ G DG R R +D+ +DQSY L ++ FP+GD K Sbjct: 121 AVVTGHYARLTQPADGGDGYLR----RGVDMNKDQSYVLGVLGAHEIAHCMFPVGDTVKP 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257 +R+ A G +A K DS DICF+ G + + I L G IV G L H Sbjct: 177 EIREEAAASGFSVAKKPDSYDICFIPDG---NTQAFLGKHIGLRPGMIVDREGTTLREHA 233 Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+ +TIGQR+GL + A G P +V +D + V VG RE LEV I+ + +L Sbjct: 234 GVHEFTIGQRKGLDIKEPAADGRPRYVTDIDAATGTVTVGSREDLEVGVIHADRLKFL-- 291 Query: 314 GLFEDAVVDG-FKCFVKIRSSQDPVPVF--VQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 +DG C V++R+ V + R D + +D +S GVA GQA V Y Sbjct: 292 ----HPAMDGELDCEVQVRAHGGVVKCHARIDRTADTMRLDLAESLSGVARGQAAVLYLP 347 Query: 371 DSNEARVLGGGIISGSK 387 D VLG G I G++ Sbjct: 348 DPEGDIVLGSGTICGTE 364 >gi|315282423|ref|ZP_07870840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria marthii FSL S4-120] gi|313613928|gb|EFR87655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria marthii FSL S4-120] Length = 371 Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 138/375 (36%), Positives = 201/375 (53%), Gaps = 23/375 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + N D+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MTTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L Sbjct: 58 DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + VGD+ + + R +D +DQ+YFL +Q QL + FPLG Sbjct: 118 ESLGADYVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K VR++A++ GL ADK DS ICF+ + + + A G++ L+G++L Sbjct: 173 GMEKTEVREIAKKAGLATADKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLDGEVL 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP FVV D ++ + V E+L + +I+ Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKANVLFVEQGFHHETLYSDSLIATDIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368 + + + +C K R Q V V +DG V F + GQA VFY Sbjct: 291 FTTNAEKPKTI----ECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGII 383 D LGGG I Sbjct: 347 DGDI----CLGGGTI 357 >gi|16803552|ref|NP_465037.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes EGD-e] gi|47097209|ref|ZP_00234773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes str. 1/2a F6854] gi|224500677|ref|ZP_03669026.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes Finland 1988] gi|224501548|ref|ZP_03669855.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL R2-561] gi|254828254|ref|ZP_05232941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes FSL N3-165] gi|254898322|ref|ZP_05258246.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes J0161] gi|254912186|ref|ZP_05262198.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes J2818] gi|254936514|ref|ZP_05268211.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes F6900] gi|284801902|ref|YP_003413767.1| hypothetical protein LM5578_1657 [Listeria monocytogenes 08-5578] gi|284995044|ref|YP_003416812.1| hypothetical protein LM5923_1609 [Listeria monocytogenes 08-5923] gi|24638317|sp|Q8Y714|MNMA_LISMO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|16410941|emb|CAC99590.1| lmo1512 [Listeria monocytogenes EGD-e] gi|47014423|gb|EAL05392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes str. 1/2a F6854] gi|258600642|gb|EEW13967.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes FSL N3-165] gi|258609108|gb|EEW21716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes F6900] gi|284057464|gb|ADB68405.1| hypothetical protein LM5578_1657 [Listeria monocytogenes 08-5578] gi|284060511|gb|ADB71450.1| hypothetical protein LM5923_1609 [Listeria monocytogenes 08-5923] gi|293590159|gb|EFF98493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes J2818] Length = 371 Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 138/375 (36%), Positives = 200/375 (53%), Gaps = 23/375 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + N D+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L Sbjct: 58 DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + VGD+ + + R +D +DQ+YFL +Q QL + FPLG Sbjct: 118 ESLGADYVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K VR++A++ GL ADK DS ICF+ + + + A G++ L+G++L Sbjct: 173 AMEKTEVREIAKKAGLATADKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLDGEVL 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP FVV D + + V E+L + +I+ Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368 + + + +C K R Q V V +DG V F + GQA VFY Sbjct: 291 FTTNAEKPKTI----ECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGII 383 D LGGG I Sbjct: 347 DGDV----CLGGGTI 357 >gi|193212019|ref|YP_001997972.1| tRNA-specific 2-thiouridylase MnmA [Chlorobaculum parvum NCIB 8327] gi|193085496|gb|ACF10772.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobaculum parvum NCIB 8327] Length = 364 Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 138/377 (36%), Positives = 198/377 (52%), Gaps = 27/377 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 V++ +SGGVDS+ A LL + GY V G+ +++ ++ + + A R+ D Sbjct: 6 HVIIGLSGGVDSAAAACLLIKQGYRVTGLNIRVLDTPEDTSTLAP--------SAMRISD 57 Query: 82 TINVSHYVF--DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + VF + +F V+ F Y AG TP PC+ CN+ +K+ L R LGAD Sbjct: 58 SEEFDFPVFTLNLSAKFARDVVGYFHDDYLAGRTPNPCMVCNKAIKWFGLFEAMRLLGAD 117 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ATGHY R+ DG R + + +D E+DQSYFL+ TQ +L FPLG K Sbjct: 118 LVATGHYARTER---RDGVTR--LLKGIDPEKDQSYFLWMLTQAELAKTLFPLGGYTKAE 172 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILGRH 256 VR+LAR + A+K +SQ+ICFV Y + R G+ G+IV +G+++G H Sbjct: 173 VRELARSFEVHAAEKKESQEICFVPHDDYCAYLTRAIPGLEERVAGGEIVDQSGKVIGHH 232 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G YTIGQRRGLGV+ GEP++V +D +R+ VG + LE + +NW G Sbjct: 233 RGYPFYTIGQRRGLGVSTGEPVYVTKIDAEHNRIRVGSKADLECRSLIATAMNWSGIAT- 291 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 DA F+ +IR V+ DD V F + + GVA GQA VFY D Sbjct: 292 PDAP---FETEARIRYRDRQSACMVEPLGDDRARVRFHEPKQGVACGQAVVFYDGDE--- 345 Query: 376 RVLGGGIISGSKRSDAV 392 VLGGGII+ +D+ Sbjct: 346 -VLGGGIIAEVNPADSA 361 >gi|289571223|ref|ZP_06451450.1| LOW QUALITY PROTEIN: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis T17] gi|289544977|gb|EFD48625.1| LOW QUALITY PROTEIN: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis T17] Length = 347 Score = 216 bits (550), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 143/359 (39%), Positives = 198/359 (55%), Gaps = 26/359 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+V+ AMSGGVDSSV AA + G++V+GV + L ++ + R GS CC+ +D DARR Sbjct: 1 MKVLAAMSGGVDSSVAAARMVDAGHEVVGVHMAL-STAPGTLRTGSRGCCSKEDAADARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ E+F+ VI F SSYA GETP PCV CN+ +KF+ L + LG Sbjct: 60 VADVLGIPFYVWDFAEKFKEDVINDFVSSYARGETPNPCVRCNQQIKFAALSARAVALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R G R R R +D ++DQSY L T QQL FP+GD K Sbjct: 120 DTVATGHYARL------SGGRLR---RAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKR 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVHLNGQILGRH 256 +R A GL +A+K DS DICF+ G K F + +RI G +V +G +L H Sbjct: 171 QIRAEAARRGLAVANKPDSHDICFIPSGNTKAF-LGERIG---VRRGVVVDADGVVLASH 226 Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G+ +TIGQRRGLG+A G P +V +D +++ V VG L+V + R + Sbjct: 227 DGVHGFTIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTA 286 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 G VD C V++R+ + V + D ++V GVA GQ V Y D Sbjct: 287 -GAAPSGPVD---CVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQTLVLYRPD 341 >gi|255532078|ref|YP_003092450.1| tRNA-specific 2-thiouridylase MnmA [Pedobacter heparinus DSM 2366] gi|255345062|gb|ACU04388.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pedobacter heparinus DSM 2366] Length = 363 Score = 216 bits (550), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 130/371 (35%), Positives = 197/371 (53%), Gaps = 17/371 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDA 76 K R++VAMSGGVDSSV A +L GY+VIG+T++ Y + +S ++ CC+ + DA Sbjct: 3 KKGRILVAMSGGVDSSVAAVMLHEQGYEVIGLTMKTWDYATSGSSSKETGCCSLDSINDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + HY+ D + F + VI F Y AG TP PCV CN +K+ LL +L Sbjct: 63 RTLAVNYGFPHYILDIRDEFGDFVIDNFVDEYLAGRTPNPCVLCNTHIKWEALLKRANKL 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 + +ATGHY R D G R ++ + D +DQSY L+ +Q+ L +FPLG Sbjct: 123 DCEFIATGHYANIRQQ--DSG--RYVISKGKDENKDQSYVLWGVSQENLSRTQFPLGSFA 178 Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252 K +R +A +MG ++A KS+S +ICFV Y +K + G+ + NG + Sbjct: 179 KSEIRQMALDMGQEELAKKSESYEICFVPDNDYRAFLKHKVEDLEQRVAGGNFITSNGMV 238 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G+H G YTIGQR+GLG+A GEP+FV + S+ V++G + LE +R +N + Sbjct: 239 VGQHKGYPFYTIGQRKGLGIAFGEPMFVTQILPESNTVVLGRADELERKEAMVRNLNLVK 298 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 +E KIR + + + D + V F+ + +A GQ+ VFY + Sbjct: 299 ---YESIHEPMDNVVTKIRYKDAGMLSTIVQEKDKMRVVFDHNVSAIAPGQSAVFYEGND 355 Query: 373 NEARVLGGGII 383 +LGGG + Sbjct: 356 ----LLGGGFL 362 >gi|309807240|ref|ZP_07701212.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LactinV 03V1-b] gi|308166378|gb|EFO68585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LactinV 03V1-b] Length = 375 Score = 216 bits (550), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 140/379 (36%), Positives = 200/379 (52%), Gaps = 25/379 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK YDV+GV ++ ++ S G C A +D D +RV Sbjct: 7 IRVVVGMSGGVDSSVSALLLKEQRYDVVGVFMKNWDDTDDS---GVCTATEDFEDVKRVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + N V F S Y G TP P + CN+ +KF L +L AD Sbjct: 64 DKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKLDADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY ++ V D+ +M RP D +DQ+YFL TQ+QL FPL D+ K V Sbjct: 124 IAMGHYAKT---VTDENGIVHMM-RPKDGNKDQTYFLSQVTQEQLKKAIFPLADLSKPQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A K DS ICF+ + + + + A+ G+IV +G+I+G+H+G++ Sbjct: 180 RMIAEQAGLATAKKKDSTGICFIGERNFKNFLSEFLP--AMGGNIVTSDGRIVGKHSGLM 237 Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ + P FVV + + +IV E L + E+++ Sbjct: 238 YYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSELLYASSLDASEVSFFTG 297 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSD 371 D + C K R Q V V V N D V+V+F++ V GQA VFY + Sbjct: 298 LPSNDTTI---HCTAKFRYRQPDVAVTVNYNKDNNTVHVEFDELARAVTPGQAIVFYDGE 354 Query: 372 SNEARVLGGGIISGSKRSD 390 LGG II + R + Sbjct: 355 ----ECLGGAIIDKAYRGN 369 >gi|94263083|ref|ZP_01286902.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [delta proteobacterium MLMS-1] gi|93456626|gb|EAT06734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [delta proteobacterium MLMS-1] Length = 443 Score = 216 bits (550), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 142/405 (35%), Positives = 205/405 (50%), Gaps = 41/405 (10%) Query: 4 SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63 S+A N++ + +V VAMSGGVDSSV AALL++ G +V GV ++L + R Sbjct: 59 SQAIHQNNIFVGPEIAGRQVAVAMSGGVDSSVTAALLQQAGAEVRGVFMRLAQPEVEAHR 118 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 + A V D + + V D + FR V+ PF +Y AG TP PCV CNR Sbjct: 119 Q----------RAAAVADFLGIELTVLDLAQPFRQQVLNPFVEAYLAGLTPNPCVFCNRL 168 Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183 +KF LL + G ++LATGHY+ RL G RR +CR +D +DQSYFL + Sbjct: 169 IKFGLLLEILLAQGVELLATGHYV--RLLPAATGGRR--LCRGLDPGKDQSYFLCRLAAE 224 Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK---------- 233 +L L FPLGD K V LA +GL S+SQD+CF+ + D + Sbjct: 225 KLPRLLFPLGDKHKSEVYQLAARLGLSGRHGSESQDVCFLGKQSVGDFLAAHGPPGGAEG 284 Query: 234 --------RINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDK 285 ++ A +G IV ++G+ LG+H G+ YT+GQRRGLG+ P +VV LD Sbjct: 285 AGPAAGGGEVSELRARQGRIVTVDGRELGQHGGVHRYTVGQRRGLGIPDATPYYVVALDA 344 Query: 286 NSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND 345 + V+VG E L+ I L ++NWL + F V++R P P ++ Sbjct: 345 ARNLVVVGKPEDLQRRLIRLADLNWLTTA--PPPLPARFA--VQLRHRHRPAPALIEPAA 400 Query: 346 DGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389 DG + V F++ + A GQ Y + ++L GG I ++ S Sbjct: 401 DGTFSVSFDEPQRAPAPGQYAALYDGE----QLLAGGEILPAQAS 441 >gi|323359738|ref|YP_004226134.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Microbacterium testaceum StLB037] gi|323276109|dbj|BAJ76254.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Microbacterium testaceum StLB037] Length = 365 Score = 216 bits (550), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 145/367 (39%), Positives = 197/367 (53%), Gaps = 25/367 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV+GV L L + + R GS CC +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVDAGHDVVGVHLALSRA-GGTLRAGSRGCCTIEDAMDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ ERFR+ VI F S Y AG TP PC+ CN +KF+ LL +LG Sbjct: 60 AADKLGMPFYVWDFSERFRDDVIDDFVSEYRAGRTPNPCMRCNEKIKFAALLERALELGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGHY + L D R + R D +DQSY L T +QL FPLG + Sbjct: 120 DAVCTGHY--ATLV---DTPEGRELHRASDNAKDQSYVLGVLTAEQLAHTYFPLGATPSK 174 Query: 199 S-VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRH 256 + VR A E GL +A K DS DICF+ G D + + E G+I+ +G ++G H Sbjct: 175 ALVRAEAEERGLTVAQKPDSHDICFIPDG---DTRGWLADKVGAEKGEILDRSGAVVGTH 231 Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G +T+GQRRGL + + G+P FV+ + ++ V+VGP+E+L I W G Sbjct: 232 EGAHAFTVGQRRGLQLGVPAPDGKPRFVLEVRPVNNTVVVGPKEALACAEIAGERFTWAG 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + F C V+IR+ DPVP F + D + V + GVA GQ V Y Sbjct: 292 RAPSSTS----FACDVQIRAHADPVPAFAELEDGVLTVRPDAPFDGVAPGQTAVLY---- 343 Query: 373 NEARVLG 379 + RV+G Sbjct: 344 DGTRVIG 350 >gi|297616542|ref|YP_003701701.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Syntrophothermus lipocalidus DSM 12680] gi|297144379|gb|ADI01136.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Syntrophothermus lipocalidus DSM 12680] Length = 340 Score = 216 bits (550), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 133/366 (36%), Positives = 195/366 (53%), Gaps = 32/366 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV V MSGGVDS V A LLK GYDVIG+T+ +++ K A V Sbjct: 4 RVAVLMSGGVDSGVAALLLKEQGYDVIGLTMLNWSAEVCQK-------------AAEVAR 50 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + +SH+V D F+ VI F +Y G TP PCV CN VKF +L +G + Sbjct: 51 FLGISHHVVDLRAEFKRQVIDYFCRTYEEGLTPNPCVVCNEFVKFGLMLEQAWDVGCRWV 110 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R L D+ R ++ + +D ++DQSYFL+ Q QLC L FPLG+M K+ + Sbjct: 111 ATGHYARVEL---DETTGRHLLKKGVDPKKDQSYFLYRLKQNQLCRLLFPLGNMTKQETK 167 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKY--FDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +A + GL +A +SQ++CF+ +G Y F K + + G I G +LG H G+ Sbjct: 168 SIAAKYGLPVAKAEESQEVCFI-EGDYRQFLAAKGVK---GVPGPIRDQEGNVLGTHQGL 223 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFED 318 I+YT+GQRRGLG+ G P +V+ LD ++ ++VG + L + + N++ + L E Sbjct: 224 ISYTVGQRRGLGLRAGRPFYVIDLDTRNNTLVVGEEKELYRQELLATDNNFIPFESLTEP 283 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 +V+ KIR + + G+ V+F + V GQ+ V+Y D V+ Sbjct: 284 LMVEA-----KIRYTAPLAQARLTPVSGGIKVEFVHPQRAVTRGQSVVYYQGDV----VV 334 Query: 379 GGGIIS 384 GGGII+ Sbjct: 335 GGGIIA 340 >gi|94266357|ref|ZP_01290057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [delta proteobacterium MLMS-1] gi|93453040|gb|EAT03525.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [delta proteobacterium MLMS-1] Length = 389 Score = 216 bits (549), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 142/405 (35%), Positives = 204/405 (50%), Gaps = 41/405 (10%) Query: 4 SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63 S+A N++ + +V VAMSGGVDSSV AALL++ G +V GV ++L + R Sbjct: 5 SQAIHQNNIFVGPEIAGRQVAVAMSGGVDSSVTAALLQQAGAEVRGVFMRLAQPEVEAHR 64 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 + + V D + + V D + FR V+ PF +Y AG TP PCV CNR Sbjct: 65 QRAAA----------VADFLGIELTVLDLAQPFRQQVLNPFVEAYLAGLTPNPCVFCNRL 114 Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183 +KF LL G ++LATGHY+ RL G RR +CR +D +DQSYFL + Sbjct: 115 IKFGLLLETLLAQGVELLATGHYV--RLLPAATGGRR--LCRGLDPGKDQSYFLCRLAAE 170 Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK---------- 233 +L L FPLGD K V LA +GL S+SQDICF+ + D + Sbjct: 171 KLPRLLFPLGDKHKSEVYQLAARLGLSGRHGSESQDICFLGKQSVGDFLAAHGPPGGAEG 230 Query: 234 --------RINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDK 285 ++ A +G IV ++G+ LG+H G+ YT+GQRRGLG+ P +VV LD Sbjct: 231 AGPAAGGGEVSELRARQGRIVTVDGRELGQHGGVHRYTVGQRRGLGIPDATPYYVVALDA 290 Query: 286 NSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND 345 + V+VG E L+ I L ++NWL + F V++R P P ++ Sbjct: 291 ARNLVVVGKPEDLQRRLIRLADLNWLTTA--PPPLPARFA--VQLRHRHRPAPALIEPAA 346 Query: 346 DGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389 DG + V F++ + A GQ Y + ++L GG I ++ S Sbjct: 347 DGTFSVSFDEPQRAPAPGQYAALYDGE----QLLAGGEILPAQAS 387 >gi|289434792|ref|YP_003464664.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171036|emb|CBH27578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313633159|gb|EFS00043.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria seeligeri FSL N1-067] Length = 371 Score = 216 bits (549), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 138/377 (36%), Positives = 203/377 (53%), Gaps = 23/377 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D+RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D RV Sbjct: 7 DIRVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYDDVIRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L LGAD Sbjct: 64 ANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESLGAD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + + VGD+ + + R +D +DQ+YFL +Q+QL + FPLG M+K+ Sbjct: 124 FVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQEQLQKVMFPLGGMEKKE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A + GL A+K DS ICF+ + + + A G + L+G++LG+H+G+ Sbjct: 179 VREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGKMQTLDGEVLGKHDGL 236 Query: 260 INYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315 + YTIGQR GLG+ GEP FV D + + V ESL + +I++ + Sbjct: 237 MYYTIGQRHGLGIGGDGEPWFVAGKDLKENILFVEQGFHHESLYSDSLIATDISFTTNAE 296 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 + +C K R Q V V R+D+ V F + + GQA VFY D Sbjct: 297 KPKTI----ECTAKFRYRQTDTKVTVHLRDDNTAEVVFAEPVRAITPGQAVVFYDGDI-- 350 Query: 375 ARVLGGGIISGSKRSDA 391 LGGG I +++A Sbjct: 351 --CLGGGTIDTVWKNNA 365 >gi|259500706|ref|ZP_05743608.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners DSM 13335] gi|302191396|ref|ZP_07267650.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus iners AB-1] gi|309803957|ref|ZP_07698040.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LactinV 11V1-d] gi|309809301|ref|ZP_07703170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners SPIN 2503V10-D] gi|312873992|ref|ZP_07734028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LEAF 2052A-d] gi|315653459|ref|ZP_07906380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners ATCC 55195] gi|325911482|ref|ZP_08173893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners UPII 143-D] gi|329921278|ref|ZP_08277716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners SPIN 1401G] gi|259168090|gb|EEW52585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners DSM 13335] gi|308163959|gb|EFO66223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LactinV 11V1-d] gi|308170414|gb|EFO72438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners SPIN 2503V10-D] gi|311090541|gb|EFQ48949.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LEAF 2052A-d] gi|315489150|gb|EFU78791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners ATCC 55195] gi|325476682|gb|EGC79837.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners UPII 143-D] gi|328934570|gb|EGG31074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners SPIN 1401G] Length = 375 Score = 216 bits (549), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 138/379 (36%), Positives = 202/379 (53%), Gaps = 25/379 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDV+GV ++ ++ S G C A +D D +RV Sbjct: 7 IRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDDTDDS---GVCTATEDFEDVKRVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + N V F S Y G TP P + CN+ +KF L +L AD Sbjct: 64 DKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKLDADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY ++ V D+ +M RP D +DQ+YFL TQ+QL FPL D+ K V Sbjct: 124 IAMGHYAKT---VTDENGVVHMM-RPKDGNKDQTYFLSQVTQEQLKKAIFPLADLSKPQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A K DS ICF+ + + + + A+ G+IV +G+I+G+H+G++ Sbjct: 180 RMIAEQAGLATAKKKDSTGICFIGERNFKNFLSEFLP--AMGGNIVTSDGRIVGKHSGLM 237 Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ + P FVV + + +IV + L + E+++ Sbjct: 238 YYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSDLLYASSLDASEVSFFTG 297 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSD 371 D + C K R Q V V + N ++ V+V+F++ V GQA VFY + Sbjct: 298 LPSNDTTI---HCTAKFRYRQPDVAVTMNYNKANNTVHVEFDELARAVTPGQAIVFYDGE 354 Query: 372 SNEARVLGGGIISGSKRSD 390 LGG II + R + Sbjct: 355 ----ECLGGAIIDKAYRGN 369 >gi|117927897|ref|YP_872448.1| tRNA-specific 2-thiouridylase MnmA [Acidothermus cellulolyticus 11B] gi|166234840|sp|A0LSQ2|MNMA_ACIC1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|117648360|gb|ABK52462.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidothermus cellulolyticus 11B] Length = 362 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 151/375 (40%), Positives = 205/375 (54%), Gaps = 23/375 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDSSV AA + G++V+GV L L ++ + S R+G+ CC+ +D DARR Sbjct: 1 MRVLAAMSGGVDSSVAAARMVDAGHEVVGVHLALSSTPR-SHREGARGCCSLEDARDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D ERFR VI F + YA G TP PC+ CN +KF+ +L LG Sbjct: 60 AADVLGIPFYVWDVAERFRQDVIEDFLAEYAQGRTPNPCLRCNERIKFAAVLDRALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGHY +R+ G G + R D +DQSY L +Q QL FPLGD K Sbjct: 120 DAVCTGHY--ARIQRGPQGLE---LHRAADSAKDQSYVLGVLSQPQLEHALFPLGDSLKT 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR A GL +ADK DS DICF+ G D + R + G A GDIV +G+ LG H+G Sbjct: 175 EVRAEAAARGLAVADKPDSHDICFIPDGDTADFL-RSHLGAA-PGDIVDSSGRRLGSHDG 232 Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +T+GQRRGL + G P +V+ + + V+VG + L V + W G Sbjct: 233 AYQFTVGQRRGLRLGTPAPDGRPRYVLEVSPVTRTVVVGTADELSVTGLTGVRPIWCGPP 292 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 DA ++ C V+ R+ P V+ D V V+F GVA GQA VFY + Sbjct: 293 --PDAPLE---CTVQYRAHGAAAPAVVELRGDEVDVEFRAPVRGVAPGQAAVFYA----D 343 Query: 375 ARVLGGGIISGSKRS 389 RVLG I+ ++R+ Sbjct: 344 TRVLGSATIARTRRA 358 >gi|308070334|ref|YP_003871939.1| Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paenibacillus polymyxa E681] gi|305859613|gb|ADM71401.1| Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paenibacillus polymyxa E681] Length = 373 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 145/380 (38%), Positives = 205/380 (53%), Gaps = 28/380 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MAKANHETRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGRCTAEEDA 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RRVC+ I++ +Y ++E+ + + V F Y AG TP P V CNR +KF + L+ Sbjct: 58 EDVRRVCEQIDIPYYTVNFEKEYFDKVFSYFLDEYKAGRTPNPDVMCNREIKFGEFLNKA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + V +DG + R +D +DQ+YFL A +Q QL FP+G Sbjct: 118 LDLGADYVATGHYAQV---VEEDG--HFTLLRGVDSNKDQTYFLNALSQTQLSRAMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI--ALEGDIVHL-NG 250 + K VR +A GL A K DS +CF+ + + K +G A GD+V + G Sbjct: 173 HLPKPEVRKIAEAAGLYTAKKKDSTGVCFIGERNF----KEFLSGYLPAKGGDMVDIATG 228 Query: 251 QILGRHNGIINYTIGQRR---GLGVAMGEPLFVV--YLDKNSSRVIVGPR-ESLEVHRIY 304 ++ GRH+G++ YT+GQR+ G GEP FV L+KN V+ G R SL + Sbjct: 229 EVKGRHDGLMYYTLGQRQGLGIGGSGSGEPWFVADKDLEKNILYVVQGDRHHSLYSTSLI 288 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQ 363 ++NW+ + F+C K R Q V +Q DG V+V F+ + + GQ Sbjct: 289 ATDVNWIEGA--DTRPTSEFRCTAKFRYRQPDQQVTLQWLADGTVHVIFDVHQKAITPGQ 346 Query: 364 ACVFYTSDSNEARVLGGGII 383 A VFY + R LGGG I Sbjct: 347 AVVFYDGE----RCLGGGTI 362 >gi|220913201|ref|YP_002488510.1| tRNA-specific 2-thiouridylase MnmA [Arthrobacter chlorophenolicus A6] gi|219860079|gb|ACL40421.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arthrobacter chlorophenolicus A6] Length = 372 Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 191/377 (50%), Gaps = 28/377 (7%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84 MSGGVDS+V AA G+DV+GV L L + + R GS CC +D DA R CD + Sbjct: 1 MSGGVDSAVAAARAVEAGHDVVGVHLAL-SRMPGTLRTGSRGCCTIEDSRDAWRACDVLG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + +YV+D+ ERF+ V+ F YAAG TP PC+ CN +KF+ LL LG D + TG Sbjct: 60 IPYYVWDFSERFKEDVVQDFIDEYAAGRTPNPCMRCNERIKFAALLEKAIALGFDAVCTG 119 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDL 203 HY + V +D R + R D +DQSY L T +QL FPL D K VR Sbjct: 120 HYAK----VIEDSHGNRELHRAADWAKDQSYVLGVLTHEQLKHSMFPLADTPSKAEVRAE 175 Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGIINY 262 A GL +A+K DS DICF+ G D + I + GDIV G +G H G + Sbjct: 176 AERRGLSVANKPDSHDICFIPDG---DTAGWLAEKIDMSTGDIVDETGAKVGEHPGANAF 232 Query: 263 TIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 T+GQRRGL + A G+P FV+ + ++V+VGP L + I +++W G + E Sbjct: 233 TVGQRRGLKLGRPAADGKPRFVLEIRPKENKVVVGPEALLAIDEIQGIKVSWAGLPIEEV 292 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV--------GVASGQACVFYTS 370 F C ++R+ DPVP + D D V GVA GQ V Y Sbjct: 293 DTGAEFDCHAQVRAHGDPVPAHARMEADPDSADAPARLVVTLTDPLRGVAPGQTVVLYQG 352 Query: 371 DSNEARVLGGGIISGSK 387 +RVLG I ++ Sbjct: 353 ----SRVLGQATIDAAR 365 >gi|227548033|ref|ZP_03978082.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium lipophiloflavum DSM 44291] gi|227079887|gb|EEI17850.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium lipophiloflavum DSM 44291] Length = 359 Score = 215 bits (548), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 147/371 (39%), Positives = 195/371 (52%), Gaps = 24/371 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRV 79 MRV+ AMSGGVDSSV AA L G+DV+GV L L +A++ CC+ +D DARRV Sbjct: 1 MRVLAAMSGGVDSSVAAARLVDAGHDVVGVHLALSRDPQATRESARGCCSLEDSADARRV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + + YV+D+ +RF+ VI F SY GETP PC+ CN +KF+ LL LG D Sbjct: 61 CDKLGIPFYVWDFSDRFKAEVIDNFVWSYDNGETPNPCLRCNEKIKFAALLDRALALGFD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY V D+G R R D +DQSY L T+ +L FP+GD +K Sbjct: 121 AVATGHYA----IVDDEGNLR----RSADPLKDQSYVLGVLTRAELDRCIFPVGDTEKPQ 172 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNG 258 +R+ A+ G A K DS DICF+ G + R I + G IV +G L H+G Sbjct: 173 IREEAKRHGFSTATKPDSYDICFIPDGNTQAFLGR---SIGMRPGMIVDADGTELKEHDG 229 Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 YTIGQRRGL + A G+P +V +D + V VGPR++LEV I + Sbjct: 230 AFQYTIGQRRGLDLRVPAADGQPRYVTDIDAATGVVTVGPRQALEVREIRADRLK----- 284 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 + A+ F V+IR+ V + D + + GVA GQA V Y D + Sbjct: 285 VLHPAMNGTFTANVQIRAHGGVVGCDARVEGDEMVLALHSPLEGVARGQAAVLYLPDPDG 344 Query: 375 AR--VLGGGII 383 VLG G I Sbjct: 345 LGDVVLGSGTI 355 >gi|290893871|ref|ZP_06556849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes FSL J2-071] gi|290556588|gb|EFD90124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes FSL J2-071] Length = 371 Score = 215 bits (548), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 139/383 (36%), Positives = 203/383 (53%), Gaps = 23/383 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + N D+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L Sbjct: 58 DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + VGD+ + + R +D +DQ+YFL +Q QL + FPLG Sbjct: 118 ESLGADYVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K VR++A++ GL A+K DS ICF+ + + + A G++ L+G++L Sbjct: 173 GMEKTEVREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLDGEVL 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP FVV D + + V E+L + +I+ Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368 + + A +C K R Q V V +DG V F + GQA VFY Sbjct: 291 FTTNA----AKPKTIECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDA 391 D LGGG I ++ A Sbjct: 347 DGDI----CLGGGTIDTVWKNGA 365 >gi|331269731|ref|YP_004396223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum BKT015925] gi|329126281|gb|AEB76226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum BKT015925] Length = 346 Score = 215 bits (548), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 127/370 (34%), Positives = 200/370 (54%), Gaps = 38/370 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V + +SGGVDSSV A LLK GYD+IG+T+++ + + DA +V + Sbjct: 4 KVAIGLSGGVDSSVAAYLLKEKGYDLIGITMKVSDVDVSE-------------DAAKVAE 50 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +++ D + F+N VI FA Y G TP PC CN+ +KF LL ++LGAD + Sbjct: 51 KLDIPYHILDLRDEFKNRVIDNFAEEYLQGRTPNPCAMCNKYIKFGVLLEKAKELGADYI 110 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + G R ++ D ++DQ+Y ++ TQ L + P G+ K +R Sbjct: 111 ATGHYARVEEHNG-----RYLVLNAKDDKKDQTYMFYSLTQDVLKHILMPCGEYTKVQIR 165 Query: 202 DLAREMGLDIADKSDSQDICFV---QQGKY---FDVVKRINAGIALEGDIVHLNGQILGR 255 ++AR +GL++ DK +S DICF+ GKY + RI A G+ V G ILG+ Sbjct: 166 EIARNLGLEVHDKKESMDICFIPDNDHGKYIQGLECKNRIKA-----GNFVDKEGNILGK 220 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H G+I YTIGQR+GLG+++G+P FV+ + + V+VG + + +++N++ L Sbjct: 221 HKGLIYYTIGQRKGLGLSLGKPGFVIDIIPERNEVVVGDESEIFNSGLIAKDVNFIPFDL 280 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374 E+ + + KIR S + +DG + V F + + GQ VFY D Sbjct: 281 LENPM----EVEAKIRYSTTKSKATIIPFEDGKIKVMFNDKQRAITKGQRVVFYIQD--- 333 Query: 375 ARVLGGGIIS 384 ++GGG I Sbjct: 334 -MLVGGGTIE 342 >gi|46200029|ref|YP_005696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermus thermophilus HB27] gi|55980227|ref|YP_143524.1| tRNA-specific 2-thiouridylase MnmA [Thermus thermophilus HB8] gi|81405338|sp|Q72GX1|MNMA_THET2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|81600559|sp|Q5SLN5|MNMA_THET8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|46197656|gb|AAS82069.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermus thermophilus HB27] gi|55771640|dbj|BAD70081.1| probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermus thermophilus HB8] Length = 367 Score = 215 bits (548), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 137/371 (36%), Positives = 196/371 (52%), Gaps = 34/371 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-----SRKASKRKG--SCCAGQDVY 74 RV+VAMSGGVDSSV A LLK GY+V+G ++ + S +A K + SCC Y Sbjct: 3 RVLVAMSGGVDSSVAALLLKEAGYEVVGAMMRFWPDLPPPSLEAGKPRAWESCCTPDAAY 62 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 +ARRV D + + Y+ DY E F +I PF YA G TP PC CN VKF LL R Sbjct: 63 EARRVADRLGIPFYLLDYREVFEEEIISPFLQDYAQGRTPNPCARCNTFVKFGALLKQAR 122 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 +LG D +ATGHY+R K + R +D +DQ+YFL+ T ++ L L FP+G Sbjct: 123 RLGLDYVATGHYVR---------KEGLALLRGLDPHKDQTYFLWGTPKEALPHLLFPVGG 173 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNGQIL 253 + K VR LA + GL A + +SQ++CFV + +R+ G +V L G+++ Sbjct: 174 LTKPEVRALAEKAGLPTARRPESQNLCFVAGDLKGFLKERLK---PRPGPLVDALTGEVV 230 Query: 254 GRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G H G YT+GQR+GLG+ +VV +D + V VGP+E+ + +N L Sbjct: 231 GEHEGASLYTLGQRKGLGLYKTHLERYVVGVDPERNVVYVGPKEACYFEGLEGEGLNLLA 290 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + L E+ V++R PV V+ + + + F V GQ+ VFY + Sbjct: 291 E-LPEEVE-------VQVRYRTPPVRAKVE-SLSPLRLRFAHPVFAVTPGQSAVFYRGE- 340 Query: 373 NEARVLGGGII 383 R+LGG +I Sbjct: 341 ---RLLGGAVI 348 >gi|313681611|ref|YP_004059349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfuricurvum kujiense DSM 16994] gi|313154471|gb|ADR33149.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfuricurvum kujiense DSM 16994] Length = 339 Score = 215 bits (548), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 135/367 (36%), Positives = 204/367 (55%), Gaps = 37/367 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR--RV 79 +V++ MSGGVDS+V LLK GYDV GV ++L+ S +++ AR R Sbjct: 4 KVLIGMSGGVDSTVSTLLLKEQGYDVEGVYMKLH----------SKPGYHEIHQARAQRA 53 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D V ++ D +E F V PF +Y G+TP PC CNR +KF +++ +GAD Sbjct: 54 ADFAGVKLHILDLQEEFNAKVFTPFIETYKEGKTPNPCALCNRNIKFGAMVAYADSIGAD 113 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHYIR DG + + + D +DQSYFLF + L FPLG+ K Sbjct: 114 YVATGHYIRH------DG---QYLLQAHDDTKDQSYFLFYIDPALVPRLLFPLGERHKSD 164 Query: 200 VRDLAREM-GLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 ++ A + GL+ A +S+S +ICFV+ Y DV+K + EG++++L G+++G+H Sbjct: 165 IKAYAAGIEGLESFASQSESSEICFVET-TYMDVLKPY-VPVDQEGEVLNLEGKVVGKHK 222 Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G ++YTIG+R+G V +P FVV + ++++VG RE LE HR+ L +N Sbjct: 223 GYMHYTIGKRKGFSVHGAHDPHFVVEIKPEINQIVVGTREDLECHRVELERVNMF----- 277 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 D+ + F+C VK+R V V+ + D V+ + +GVASGQA VFY + + Sbjct: 278 -DSRTE-FECDVKLRYRTTAVRCSVKIDGDHATVELHEPVLGVASGQAGVFYDGE----K 331 Query: 377 VLGGGII 383 +LGGG I Sbjct: 332 LLGGGWI 338 >gi|229135219|ref|ZP_04264018.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus BDRD-ST196] gi|228648261|gb|EEL04297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus BDRD-ST196] Length = 376 Score = 215 bits (548), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 139/377 (36%), Positives = 200/377 (53%), Gaps = 27/377 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P++ RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ A+ G C A +D Sbjct: 6 MNKLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDAN---GVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A E GL A K DS ICF+ + + + N A G + L+G++ Sbjct: 178 ELKKPQIREMATEAGLATAAKKDSTGICFIGERNFKGFLS--NYLPAQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 + W+ + E F C K R Q V VQ D+ V + ++ + GQA V Sbjct: 294 VGWVSNKAKEKE----FTCTAKFRYRQADNKVTVQIVDENTVRILCDEPIRAITPGQAVV 349 Query: 367 FYTSDSNEARVLGGGII 383 FY D LGG I Sbjct: 350 FYDGD----ECLGGATI 362 >gi|312872357|ref|ZP_07732427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LEAF 2062A-h1] gi|311092180|gb|EFQ50554.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LEAF 2062A-h1] Length = 375 Score = 215 bits (548), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 138/379 (36%), Positives = 201/379 (53%), Gaps = 25/379 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDV+GV ++ ++ S G C A +D D +RV Sbjct: 7 IRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDDTDDS---GVCTATEDFEDVKRVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + N V F S Y G TP P + CN+ +KF L +L AD Sbjct: 64 DKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKLDADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY ++ V D +M RP D +DQ+YFL TQ+QL FPL D+ K V Sbjct: 124 IAMGHYAKT---VTDKNGVVHMM-RPKDGNKDQTYFLSQVTQEQLKKAIFPLADLSKPQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A K DS ICF+ + + + + A+ G+IV +G+I+G+H+G++ Sbjct: 180 RMIAEQAGLATATKKDSTGICFIGERNFKNFLSEFLP--AMGGNIVTADGRIVGKHSGLM 237 Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ + P FVV + + +IV + L + E+++ Sbjct: 238 YYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSDLLYASSLDASEVSFFTG 297 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSD 371 D + C K R Q V V + N ++ V+V+F++ V GQA VFY + Sbjct: 298 LPSNDTTI---HCTAKFRYRQPDVAVTMNYNKANNTVHVEFDELARAVTPGQAIVFYDGE 354 Query: 372 SNEARVLGGGIISGSKRSD 390 LGG II + R + Sbjct: 355 ----ECLGGAIIDKAYRGN 369 >gi|254829729|ref|ZP_05234384.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes 10403S] Length = 371 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 140/375 (37%), Positives = 202/375 (53%), Gaps = 23/375 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + N D+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I++ +Y ++E+ + + V F Y G TP P V CN+ +KF L Sbjct: 58 DDVIRVANQIDIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + VGD+ + + R +D +DQ+YFL +Q QL + FPLG Sbjct: 118 ESLGADYVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K VR++A++ GL ADK DS ICF+ + + + A G++ L+G++L Sbjct: 173 AMEKTEVREIAKKAGLATADKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLDGEVL 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVV--YLDKNSSRVIVG-PRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP FVV L +N V G E+L + +I+ Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKNLKENVLFVEQGFHHETLYSDSLIATDIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368 + + + +C K R Q V V +DG V F + GQA VFY Sbjct: 291 FTTNAEKPKTI----ECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGII 383 D LGGG I Sbjct: 347 DGDV----CLGGGTI 357 >gi|187250509|ref|YP_001874991.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Elusimicrobium minutum Pei191] gi|186970669|gb|ACC97654.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Elusimicrobium minutum Pei191] Length = 354 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 137/376 (36%), Positives = 205/376 (54%), Gaps = 36/376 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKGSCCAG---QDVYDA 76 M+++V +SGGVDSS+ AALLK GY+V G T+ +++ S + C G +D+ A Sbjct: 1 MKILVGLSGGVDSSLTAALLKDKGYEVTGATMSIWDPSLPTPATPNNACLGPEEEDIKTA 60 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V I + +V D E ++ VI F Y G TP PC+ CN +KF L + ++ Sbjct: 61 SAVAKEIGIGFHVIDCREEYKKIVIENFKDEYKKGRTPNPCIWCNSFIKFGALPASAKKQ 120 Query: 137 GA--DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 G D ATGHY R + ++ R + + +D +DQ+YFL+ TQ+QL + FPLG+ Sbjct: 121 GVIFDKFATGHYAR---IIFNEETGRYQLRKALDEAKDQTYFLYRLTQKQLSETLFPLGE 177 Query: 195 MKKESVRDLAREMGLDIADKSDSQDI-CFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 K+ VR LA+E L A+K+DSQD C G Y D+++ A G IV G +L Sbjct: 178 YTKKQVRALAKEKNLLAAEKADSQDFYC----GDYNDILQF----SAQPGSIVDKEGNVL 229 Query: 254 GRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G+H+GI NYTIG+R+G+G++ EP++V+ L + V+VG ++ L + EINW Sbjct: 230 GKHDGIWNYTIGKRKGVGISGAKEPMYVIELLPKQNLVVVGTKKDLYKDVLTASEINW-- 287 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDP-----VPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 G E+ + K KIR P P+ R + V F++ ++ + +GQ+ VF Sbjct: 288 -GSVEEP-KEPVKVQAKIRQMHTPSNATLTPLPGNRAE----VKFDEPQMSITAGQSVVF 341 Query: 368 YTSDSNEARVLGGGII 383 Y D VLGGGII Sbjct: 342 YQGDI----VLGGGII 353 >gi|260435745|ref|ZP_05789715.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. WH 8109] gi|260413619|gb|EEX06915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. WH 8109] Length = 383 Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 137/381 (35%), Positives = 205/381 (53%), Gaps = 29/381 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 L + P + RV V +SGGVDSS+ AALL G+ V G+TL L + KG+CCA + + Sbjct: 18 LRQWPGEHRVAVGLSGGVDSSLTAALLVEAGWQVEGLTLWLMSG------KGACCA-EGL 70 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-V 132 DA +C+ + + H+V D E F+ ++ Y G TPLPC CNR+VKF +L Sbjct: 71 VDAAGICEQLGIPHHVVDTRETFQQEIVQRLVDGYRDGITPLPCSQCNRSVKFGPMLDWA 130 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 ++ +ATGHY R R + GD G+ + + R +D +DQSYFL+ Q+ L + FPL Sbjct: 131 LKERKLLRIATGHYARIR-HDGDQGRHQ--LLRGLDTRKDQSYFLYDLPQEVLGRIVFPL 187 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQ 251 G++ K R A GL A+K +SQD+C + + ++A + +G+IV +G Sbjct: 188 GELTKPDTRLEAALHGLRTAEKPESQDLCLADH--HGSMRAFLDAYLPPRQGEIVLSDGT 245 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 ++G H+GI ++TIGQR+GLGVA EPL V+ LD +RV+V PR + +NW+ Sbjct: 246 VVGEHDGIEHFTIGQRKGLGVAWREPLHVIRLDAAMNRVVVAPRAEAGRDSCVVGAVNWV 305 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQ-----DPVPVF----VQRNDDGVYVDFEKSEVGVASG 362 E + V+ RS+ P+P Q + F++ + + G Sbjct: 306 SIDPIEAPRT--VEVQVRYRSTPVHAQLSPLPPTDADQQQERPHRCRLSFDEEQFSITPG 363 Query: 363 QACVFYTSDSNEARVLGGGII 383 QA VFY D+ VLGGG+I Sbjct: 364 QAAVFYDGDT----VLGGGLI 380 >gi|329121788|ref|ZP_08250404.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dialister micraerophilus DSM 19965] gi|327468061|gb|EGF13549.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dialister micraerophilus DSM 19965] Length = 352 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/366 (35%), Positives = 204/366 (55%), Gaps = 29/366 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+ AMSGGVDS++ LL+ GY+V G T+QL++ GQ++ DA+ + Sbjct: 8 RVIAAMSGGVDSTLTVRLLQEAGYEVFGATMQLFD-------------GQNLNDAKEMAK 54 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GADV 140 + + H V D E ++ V+ F SY G TP PC+ C+ +KF ++ + D Sbjct: 55 FLGIKHAVIDIRELYKKIVLEYFIDSYKNGITPNPCMMCDFKLKFGVFYDESKAMFDCDY 114 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY R V D +++ + + +DL +DQSY ++ TQ+QL + FPLG + K+ Sbjct: 115 FATGHYSR---IVFDSERQKYEVRKAVDLPKDQSYMMYHLTQEQLSRIIFPLGRICKKDT 171 Query: 201 RDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R +++E GL +K++SQDICF+ + Y D +K EG IV+ G+ILG+H+GI Sbjct: 172 RRISKEKGLPTYNKAESQDICFLTSEQSYVDFLKEEAPEAFNEGFIVNKKGKILGKHHGI 231 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL-GDGLFED 318 NYTIGQR+GLG+ P +VV +D ++++IVG E L ++ +++ + G ++ Sbjct: 232 PNYTIGQRKGLGIYAKTPQYVVSIDAKNNKIIVGENEDLFRTKLLAKDLAFTDGKPPAQE 291 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 +G K+R V+ DDG V F++ + + SGQ+ VFY D R+ Sbjct: 292 FTAEG-----KVRYGMKVHKCHVKLQDDGRATVTFDQPQRAITSGQSVVFYEGD----RL 342 Query: 378 LGGGII 383 +GGG I Sbjct: 343 IGGGTI 348 >gi|319892675|ref|YP_004149550.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Staphylococcus pseudintermedius HKU10-03] gi|317162371|gb|ADV05914.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Staphylococcus pseudintermedius HKU10-03] gi|323464287|gb|ADX76440.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus pseudintermedius ED99] Length = 370 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 141/388 (36%), Positives = 202/388 (52%), Gaps = 42/388 (10%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 4 QNTRVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYNDVIA 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L +LGA Sbjct: 61 VCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHALKLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R + +DG M R +D +DQ+YFL T+ QL + FP+GD+ K+ Sbjct: 121 DYVATGHYARVRHH--EDGSVE--MLRGVDNNKDQTYFLNQLTEAQLSKVMFPIGDIDKQ 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A E L A K DS ICF+ + + + + A G++ LNG++ G+H G Sbjct: 177 KVREIALEQDLATAKKKDSTGICFIGERNFKTFLSQYLP--AQPGEMRTLNGELKGQHGG 234 Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++ YTIGQR GLG+ G+P FVV ++LE + +Y+ E + D L+ Sbjct: 235 LMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLEDNILYV-EQGFHHDALYS 280 Query: 318 DAVV-------------DGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363 D ++ + KC K R Q V V V DD V V F++ + GQ Sbjct: 281 DYLIASDVSFVNATDLTEPLKCTAKFRYRQKDVGVTVTAHGDDAVKVTFDEPVRAITPGQ 340 Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDA 391 A VFY D LGG I + D Sbjct: 341 AVVFYDGDV----CLGGATIDDVYKKDG 364 >gi|254459090|ref|ZP_05072513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacterales bacterium GD 1] gi|207084361|gb|EDZ61650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacterales bacterium GD 1] Length = 343 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 130/368 (35%), Positives = 203/368 (55%), Gaps = 33/368 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ +V+V MSGGVDS+V A LLK+DGYDV G+ ++L++ + S A++ Sbjct: 3 KNKKVLVGMSGGVDSTVSALLLKKDGYDVEGLYMKLHSKPGYHEVHLS--------RAQK 54 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + +V D +E F V PF +YA G+TP PC CNR +KF +++ +GA Sbjct: 55 AADFVGMKLHVLDLQETFNEKVFQPFIDTYAEGKTPNPCALCNRNLKFGEMVKFADLIGA 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHYI++ DGK + D +DQSYFLF + L L FPLG K Sbjct: 115 DYVATGHYIKT------DGK---YFYQAADDTKDQSYFLFYVQKNVLPKLIFPLGSRHKN 165 Query: 199 SVRDLAREM-GLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 +++ A + GL+ A + +S +ICFV+ Y D++K + G+++ +G ++G H Sbjct: 166 DIKEFAASIKGLESFASQGESSEICFVET-TYTDLLKDY-VNVDNSGEVLDRDGNVVGEH 223 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G ++YTIG+R+G V EP +V+ +D ++++ VG +E L + + + +N D Sbjct: 224 KGYMHYTIGKRKGFTVKGAHEPHYVLSIDAKNNQITVGKKEELACNNVTIEHLNMFNDS- 282 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 D F VK+R VP V+ ++ V ++S GVA+GQA VFY D Sbjct: 283 ------DEFDTTVKLRYRTIAVPCHVKIENNKATVTLKESVYGVATGQAAVFYDDD---- 332 Query: 376 RVLGGGII 383 R++GGG I Sbjct: 333 RLIGGGWI 340 >gi|293189756|ref|ZP_06608472.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinomyces odontolyticus F0309] gi|292821346|gb|EFF80289.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinomyces odontolyticus F0309] Length = 363 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 147/378 (38%), Positives = 201/378 (53%), Gaps = 25/378 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ A+SGGVDS+V AA G+DV+GV + L +S+ R GS CC+ +D DA R Sbjct: 1 MRVLAALSGGVDSAVAAAKAVEAGHDVVGVHMAL-SSQPQECRIGSRGCCSIEDAGDAAR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + I + YV+D + F VI F + Y AG TP PCV CN VKF +L + R LG Sbjct: 60 AAEIIGIPFYVWDLAQEFEQTVITDFVAQYKAGRTPNPCVRCNEFVKFRELATRARALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197 D + TGHY DG + R D +DQSY L ++L + PLGD K Sbjct: 120 DAVCTGHYAAIV-----DGAAGPELHRGADNLKDQSYVLAVMGPEELHRVVLPLGDAPNK 174 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR A +GL +++K DS DICF+ G + R + G A EG+IV +G++LGRH Sbjct: 175 AWVRSEAERLGLGVSNKPDSYDICFIPDGDTQGFL-RAHLGAA-EGEIVTPDGEVLGRHE 232 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G NYT+GQR+GLG+ G P +V+ +++V+VG E L + RI + WL Sbjct: 233 GYWNYTVGQRKGLGIGAPAPDGRPRYVLETRPETNQVVVGASELLSISRITATDAVWLAS 292 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDG--VYVDFEKSEVGVASGQACVFYTS 370 +D D FV++R+ PVPV + R+ D + V GVA GQ+ V Y Sbjct: 293 ---DDDGSDATGLFVQLRAHGTPVPVASLTRDLDAGTISVVLASGARGVARGQSMVIYRG 349 Query: 371 DSNEARVLGGGIISGSKR 388 RVLG G I + R Sbjct: 350 ----TRVLGEGTIDETGR 363 >gi|229918430|ref|YP_002887076.1| tRNA-specific 2-thiouridylase MnmA [Exiguobacterium sp. AT1b] gi|229469859|gb|ACQ71631.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Exiguobacterium sp. AT1b] Length = 373 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 205/379 (54%), Gaps = 24/379 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K P++ VVV MSGGVDSSV A +LK GY+VIG+ ++ ++ + G C A +D D Sbjct: 6 KAPEETTVVVGMSGGVDSSVTAHVLKEQGYNVIGIFMKNWDD---TDENGVCTATEDYED 62 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 V + I + +Y ++E+ + + V F + Y G TP P V CN+ +KF L + Sbjct: 63 VIAVANQIGIPYYAVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDHALR 122 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY + + YV DG+ R + R D +DQ+YFL +Q QL FP+G M Sbjct: 123 LGADFVATGHYAQVK-YV--DGEHR--LLRGKDDNKDQTYFLNQLSQDQLARTMFPIGHM 177 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K+ VR +A E GL A K DS ICF+ + + + + + G++ L+G + GR Sbjct: 178 DKKDVRAIAEEAGLATAKKKDSTGICFIGERNFKEFLSEYLP--SQPGEMRTLDGVVKGR 235 Query: 256 HNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 H+G++ YT+GQR GLG+ G+P FVV D ++ + VG ++L + +++W Sbjct: 236 HDGLMYYTLGQRHGLGIGGDGDPWFVVGKDVENNVLFVGQGFHHDALYSDALLASKLSWT 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 G A F+ K R Q VPV V ++G V V F++ + + GQA VFY Sbjct: 296 G-----AAPTGEFRATAKFRYRQQDVPVTVAPLENGEVLVKFDEPQRAITPGQAVVFYDG 350 Query: 371 DSNEARVLGGGIISGSKRS 389 D LGG I + R+ Sbjct: 351 DV----CLGGATIDEAYRN 365 >gi|313618826|gb|EFR90711.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria innocua FSL S4-378] Length = 371 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 140/385 (36%), Positives = 199/385 (51%), Gaps = 43/385 (11%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + N D+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L Sbjct: 58 DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + VGD+ + + R +D +DQ+YFL +Q QL + FPLG Sbjct: 118 ESLGADYVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K VR++A + GL A+K DS ICF+ + + + A GD+ L+G++L Sbjct: 173 GMEKTEVREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGDMRTLDGEVL 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G+H+G++ YTIGQR GLG+ GEP FVV D ++ + V E + Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKNNVLFV--------------EQGFHH 276 Query: 313 DGLFEDAVV-------------DGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVG 358 D L+ D+++ F C K R Q V V +DG V F Sbjct: 277 DSLYSDSLIATDISFTTNSEKPKTFVCTAKFRYRQTDTKVTVNLREDGTAEVVFADPVRA 336 Query: 359 VASGQACVFYTSDSNEARVLGGGII 383 + GQA VFY D LGGG I Sbjct: 337 ITPGQAVVFYDGDI----CLGGGTI 357 >gi|296128959|ref|YP_003636209.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Cellulomonas flavigena DSM 20109] gi|296020774|gb|ADG74010.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Cellulomonas flavigena DSM 20109] Length = 372 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 148/378 (39%), Positives = 205/378 (54%), Gaps = 26/378 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV+GV + L + A +R GS CC+ +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVDAGHDVVGVHMALSRT-PAQERTGSRGCCSIEDASDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + +YV+D ERF V+ F + YAAG TP PCV CN VKF+ LL LG Sbjct: 60 AADVLGIPYYVWDMSERFERTVVADFLAEYAAGRTPNPCVRCNEHVKFAALLDKALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197 D + TGHY R G R + R +D +DQSY L ++L FPLGD+ K Sbjct: 120 DAVCTGHYARVVERAGS-----RELHRAVDPAKDQSYVLAVMGPERLARAVFPLGDVASK 174 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR A GL +A K DS DICFV G ++R G++V +GQ++G H+ Sbjct: 175 SEVRAEAVARGLSVAAKPDSYDICFVADGDTQGFLRRALG--EQPGEVVDESGQVVGTHD 232 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G YT+GQRRGL + G P +V+ ++ RV+VGP ESL+V ++ W G Sbjct: 233 GAYAYTVGQRRGLALGRPAPDGRPRYVLAVEPVQRRVVVGPAESLDVAQVRGDAAVWFG- 291 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEV-GVASGQACVFYTSD 371 D G C V++R+ VP V D G V VD + + GVA+GQ+ V Y Sbjct: 292 ----DVPAAGATCTVQVRAHGTDVPARVLAADAGTVTVDVSGAGLRGVAAGQSLVLY--- 344 Query: 372 SNEARVLGGGIISGSKRS 389 + +RV+G ++ ++ + Sbjct: 345 -DGSRVVGQATVAATRSA 361 >gi|227509407|ref|ZP_03939456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191119|gb|EEI71186.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 374 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 139/377 (36%), Positives = 202/377 (53%), Gaps = 26/377 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSVVA LLK+ GYDVIGV ++ ++ + G C A +D D +V + Sbjct: 8 RVVVGMSGGVDSSVVAYLLKQQGYDVIGVFMKNWDD---TDENGVCTATEDYKDVAKVAN 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F Y G TP P V CN+ +KF L +LGAD + Sbjct: 65 KIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPDPDVICNKEIKFKAFLDYALELGADYI 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY ++L +DG + R D +DQ+YFL + QL + FP+G++ K VR Sbjct: 125 ATGHY--AQLTRDEDGHNH--LLRASDGNKDQTYFLSQLSANQLDRVMFPIGNLVKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++AR+ GL ADK DS ICF+ + + + A G ++ ++G++ G+H+G++ Sbjct: 181 EIARKAGLATADKKDSVGICFIGEKNFKQFLGHYLP--ATPGKMMTVDGEVKGQHDGLMY 238 Query: 262 YTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314 YTIGQRRGLG+ +P FVV D + + VG E L + +I+W+ + Sbjct: 239 YTIGQRRGLGIGGDGVDNQPWFVVGKDLKKNILYVGKGYHNELLYADYLEASDIHWVNN- 297 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDS 372 D D F C K R Q V V +DDG V VDF+ + GQA VFY + Sbjct: 298 --LDRGQD-FHCTAKFRYRQKDTGVTVHLSDDGQKVRVDFDAPVRAITPGQAVVFYDGE- 353 Query: 373 NEARVLGGGIISGSKRS 389 LG II + + Sbjct: 354 ---ECLGSAIIDAAYKQ 367 >gi|313892248|ref|ZP_07825841.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dialister microaerophilus UPII 345-E] gi|313119386|gb|EFR42585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dialister microaerophilus UPII 345-E] Length = 352 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 129/366 (35%), Positives = 204/366 (55%), Gaps = 29/366 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+ AMSGGVDS++ LL+ GY+V G T+QL++ GQ++ DA+ + Sbjct: 8 RVIAAMSGGVDSTLTVRLLQEAGYEVFGATMQLFD-------------GQNLDDAKEMAK 54 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GADV 140 + + H V D E ++ V+ F SY G TP PC+ C+ +KF ++ + D Sbjct: 55 FLGIKHAVIDIRELYKKIVLEYFIDSYKNGVTPNPCMMCDFKLKFGVFYDESKAMFDCDY 114 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY R V D +++ + + +DL +DQSY ++ TQ+QL + FPLG + K+ Sbjct: 115 FATGHYSR---IVFDSERQKYEVRKAVDLPKDQSYMMYHLTQEQLSRIIFPLGRICKKDT 171 Query: 201 RDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R +++E GL +K++SQDICF+ + Y D +K EG IV+ G+ILG+H+GI Sbjct: 172 RRISKEKGLPTYNKAESQDICFLTSEQSYVDFLKEEAPEAFNEGFIVNKKGKILGKHHGI 231 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL-GDGLFED 318 NYTIGQR+GLG+ P +VV +D ++++IVG E L ++ +++ + G ++ Sbjct: 232 PNYTIGQRKGLGIYAKTPQYVVSIDAKNNKIIVGENEDLFRTKLLAKDLAFTDGKPPAQE 291 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 +G K+R V+ DDG V F++ + + SGQ+ VFY D R+ Sbjct: 292 FTAEG-----KVRYGMKVHKCHVKLQDDGRATVTFDQPQRAITSGQSVVFYEGD----RL 342 Query: 378 LGGGII 383 +GGG I Sbjct: 343 IGGGTI 348 >gi|312871416|ref|ZP_07731511.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LEAF 3008A-a] gi|311093069|gb|EFQ51418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LEAF 3008A-a] Length = 375 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 138/379 (36%), Positives = 201/379 (53%), Gaps = 25/379 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDV+GV ++ ++ S G C A +D D +RV Sbjct: 7 IRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDDTDDS---GVCTATEDFEDVKRVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + N V F S Y G TP P + CN+ +KF L +L AD Sbjct: 64 DKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKLDADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY ++ V D +M RP D +DQ+YFL TQ+QL FPL D+ K V Sbjct: 124 IAMGHYAKT---VTDKNGVVHMM-RPKDGNKDQTYFLSQVTQEQLKKAIFPLADLSKPQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A K DS ICF+ + + + + A+ G+IV +G+I+G+H+G++ Sbjct: 180 RMIAEQAGLATAKKKDSTGICFIGERNFKNFLSEFLP--AMGGNIVTSDGRIVGKHSGLM 237 Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ + P FVV + + +IV + L + E+++ Sbjct: 238 YYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSDLLYASSLDASEVSFFTG 297 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSD 371 D + C K R Q V V + N ++ V+V+F++ V GQA VFY + Sbjct: 298 LPSNDTTI---HCTAKFRYRQPDVAVTMNYNKANNTVHVEFDELARAVTPGQAIVFYDGE 354 Query: 372 SNEARVLGGGIISGSKRSD 390 LGG II + R + Sbjct: 355 ----ECLGGAIIDKAYRGN 369 >gi|197284773|ref|YP_002150645.1| tRNA-specific 2-thiouridylase MnmA [Proteus mirabilis HI4320] gi|227357779|ref|ZP_03842128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Proteus mirabilis ATCC 29906] gi|229486421|sp|B4EVG2|MNMA_PROMH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|194682260|emb|CAR41993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Proteus mirabilis HI4320] gi|227162108|gb|EEI47122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Proteus mirabilis ATCC 29906] Length = 367 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 132/374 (35%), Positives = 205/374 (54%), Gaps = 32/374 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK GY V+G+ ++ + ++ C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLKEQGYQVVGLFMKNWEEDDDTEY---CSASADLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F S Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGIELHTINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R DGK + + R +D +DQSYFL+ + QQ+ FP+G+M+K V Sbjct: 125 IATGHYVRRR---DIDGKSQ--LLRGVDNNKDQSYFLYTLSHQQIAQSLFPVGEMEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ D + R A G IV ++G+ +G H G++ Sbjct: 180 RKIAEKLDLATAKKKDSTGICFIGERKFTDFLSRYLP--AKPGPIVTVDGETIGEHQGLM 237 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ +P +VV D ++ +IV PR L + ++++W Sbjct: 238 YHTLGQRKGLGIGGTKEGSEDPWYVVDKDVANNILIVAQGHEHPR--LMSVGLIAQQLHW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + + + + F+C VK R Q +P V ++D + V F+ V GQ+ VFY Sbjct: 296 VA----REPITEAFRCTVKTRYRQADIPCTVTPLDEDKIEVRFDYPVAAVTPGQSAVFYQ 351 Query: 370 SDSNEARVLGGGII 383 + LGGGII Sbjct: 352 DEV----CLGGGII 361 >gi|309805355|ref|ZP_07699405.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LactinV 09V1-c] gi|308165355|gb|EFO67588.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LactinV 09V1-c] Length = 375 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 138/379 (36%), Positives = 200/379 (52%), Gaps = 25/379 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDV+GV ++ ++ S G C A +D D +RV Sbjct: 7 IRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDDTDDS---GVCTATEDFEDVKRVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + N V F S Y G TP P + CN+ +KF L +L AD Sbjct: 64 DKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKLDADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY ++ V D +M RP D +DQ+YFL TQ+QL FPL D+ K V Sbjct: 124 IAMGHYAKT---VTDKNGVVHMM-RPKDGNKDQTYFLSQVTQEQLKKAIFPLADLSKPQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A K DS ICF+ + + + + A+ G IV +G+I+G+H+G++ Sbjct: 180 RMIAEQAGLATATKKDSTGICFIGERNFKNFLSEFLP--AMGGKIVTADGRIVGKHSGLM 237 Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ + P FVV + + +IV + L + E+++ Sbjct: 238 YYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSDLLYASSLDASEVSFFTG 297 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSD 371 D + C K R Q V V + N ++ V+V+F++ V GQA VFY + Sbjct: 298 LPSNDTTI---HCTAKFRYRQPDVAVTMNYNKANNTVHVEFDELARAVTPGQAIVFYDGE 354 Query: 372 SNEARVLGGGIISGSKRSD 390 LGG II + R + Sbjct: 355 ----ECLGGAIIDKAYRGN 369 >gi|72161001|ref|YP_288658.1| tRNA-specific 2-thiouridylase MnmA [Thermobifida fusca YX] gi|123733604|sp|Q47SD2|MNMA_THEFY RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71914733|gb|AAZ54635.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermobifida fusca YX] Length = 363 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 143/372 (38%), Positives = 200/372 (53%), Gaps = 25/372 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 +RV+ AMSGGVDS+V AA GYDV GV L L +S S R G+ CC +D DARR Sbjct: 3 LRVLAAMSGGVDSAVAAARAVEAGYDVTGVHLAL-SSNPQSYRTGARGCCTIEDSRDARR 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D I + Y++D E F V+ F + YAAG TP PC+ CN +KF +L LG Sbjct: 62 AADVIGIPFYIWDMAEEFDRDVVQDFVAEYAAGRTPNPCLRCNEKIKFQAVLERALALGF 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGH++R ++G+ R R +D +DQSY L T++QL FPLGD KE Sbjct: 122 DAVCTGHHVRL-----ENGRLR----RSVDAVKDQSYVLAVLTREQLAHAIFPLGDCTKE 172 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR A GL +ADK DS DICF+ G ++R + G IV GQ++G H G Sbjct: 173 EVRAEAARRGLTVADKPDSHDICFIADGDTSGFLERRLG--SNPGPIVDETGQVVGEHRG 230 Query: 259 IINYTIGQRRGLGVAMGEPL--FVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 +T+GQRRGL ++ G P +V+ ++ S+ V VGPRE+L+V RI W G Sbjct: 231 AHAFTVGQRRGLNLS-GAPHRRYVLSIEPVSNTVRVGPREALQVDRIVGERPVWSGCEPP 289 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 E+ V++R+ + ++ + V + ++ +GVA GQA V Y D Sbjct: 290 EEWT----PFLVQLRAHGEVYSCRARQYEGRVEILLDEPALGVAKGQAAVLYDGDV---- 341 Query: 377 VLGGGIISGSKR 388 V+G I+ + R Sbjct: 342 VMGSSTIAETSR 353 >gi|313637741|gb|EFS03100.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria seeligeri FSL S4-171] Length = 371 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 137/377 (36%), Positives = 203/377 (53%), Gaps = 23/377 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D+RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D RV Sbjct: 7 DIRVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYDDVIRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L LGAD Sbjct: 64 ANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHAESLGAD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + + VGD+ + + R +D +DQ+YFL +Q+QL + FPLG M+K+ Sbjct: 124 FVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQEQLQKVMFPLGGMEKKE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A + GL A+K DS ICF+ + + + A G + L+G++LG+H+G+ Sbjct: 179 VREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGKMQTLDGEVLGKHDGL 236 Query: 260 INYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315 + YTIGQR GLG+ GEP FV D + + V ESL + +I++ + Sbjct: 237 MYYTIGQRHGLGIGGDGEPWFVAGKDLKENILFVEQGFHHESLYSDSLIATDISFTTNAE 296 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 + +C K R Q V V R+++ V F + + GQA VFY D Sbjct: 297 KPKTI----ECTAKFRYRQTDTKVTVHLRDNNTAEVVFAEPVRAITPGQAVVFYDGDI-- 350 Query: 375 ARVLGGGIISGSKRSDA 391 LGGG I +++A Sbjct: 351 --CLGGGTIDTVWKNNA 365 >gi|227512195|ref|ZP_03942244.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus buchneri ATCC 11577] gi|227084589|gb|EEI19901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus buchneri ATCC 11577] Length = 374 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 138/377 (36%), Positives = 202/377 (53%), Gaps = 26/377 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSVVA LLK+ GYDVIGV ++ ++ + G C A +D D +V + Sbjct: 8 RVVVGMSGGVDSSVVAYLLKQQGYDVIGVFMKNWDD---TDENGVCTATEDYKDVAKVAN 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F Y G TP P V CN+ +KF L +LGAD + Sbjct: 65 KIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPDPDVICNKEIKFKAFLDYALELGADYI 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY ++L +DG + R D +DQ+YFL + QL + FP+G++ K VR Sbjct: 125 ATGHY--AQLTRDEDGHNH--LLRASDGNKDQTYFLSQLSANQLDRVMFPIGNLVKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++AR+ GL ADK DS ICF+ + + + A G ++ ++G++ G+H+G++ Sbjct: 181 EIARKAGLATADKKDSVGICFIGEKNFKQFLGHYLP--ATPGKMMTVDGEVKGQHDGLMY 238 Query: 262 YTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314 YTIGQRRGLG+ +P FV+ D + + VG E L + +I+W+ + Sbjct: 239 YTIGQRRGLGIGGDGVDNQPWFVIGKDLKKNILYVGKGYHNELLYADYLEASDIHWVNN- 297 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDS 372 D D F C K R Q V V +DDG V VDF+ + GQA VFY + Sbjct: 298 --LDRGQD-FHCTAKFRYRQKDTGVTVHLSDDGQKVRVDFDAPVRAITPGQAVVFYDGE- 353 Query: 373 NEARVLGGGIISGSKRS 389 LG II + + Sbjct: 354 ---ECLGSAIIDAAYKQ 367 >gi|294631522|ref|ZP_06710082.1| tRNA methyl transferase [Streptomyces sp. e14] gi|292834855|gb|EFF93204.1| tRNA methyl transferase [Streptomyces sp. e14] Length = 376 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 146/388 (37%), Positives = 206/388 (53%), Gaps = 26/388 (6%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAG 70 + + P+ +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G+ CC Sbjct: 3 ETSQRPRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 61 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 +D DARR D I + YV+D +RFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 62 EDSRDARRAADVIGIPFYVWDLADRFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALL 121 Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 LG D + TGHY +++ VG+DG R + R D+ +DQSY L ++QL F Sbjct: 122 DKALALGFDAVCTGHY--AKVVVGEDGVRE--LHRASDMAKDQSYVLGVLDEKQLAHALF 177 Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 PLGD KE +R A GL +A K DS DICF+ G + R G A EGDIV Sbjct: 178 PLGDTVTTKEEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLAR-RLGKA-EGDIVDE 235 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 G ++G H G +TIGQR+GL + G+P +V+ + ++ V VGP +L+V + Sbjct: 236 TGAVVGTHEGAYGFTIGQRKGLRIGTPAPDGKPRYVLDISPVTNTVTVGPAAALDVEALT 295 Query: 305 LREINWLGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 W G A G + ++R+ V + D + V F + GVA GQ Sbjct: 296 AIRPRWCG------AAPTGPGVYTAQLRAHGGESEVTAELVDGELRVTFTEPVRGVAPGQ 349 Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDA 391 A V Y + RV+G I+ ++R+ A Sbjct: 350 AIVLY----DGTRVVGSATIASTRRATA 373 >gi|304407559|ref|ZP_07389211.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paenibacillus curdlanolyticus YK9] gi|304343510|gb|EFM09352.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paenibacillus curdlanolyticus YK9] Length = 376 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 142/378 (37%), Positives = 199/378 (52%), Gaps = 29/378 (7%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K + RVVV MSGGVDSSV A LLK++GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 KTKAETRVVVGMSGGVDSSVTALLLKQEGYDVIGIFMKNWDD---TDEFGHCTAEEDAED 59 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 RRVCD I + +Y ++E+++ + V F Y G TP P V CNR +KF + L Sbjct: 60 VRRVCDQIGIPYYTVNFEQQYFDKVFTYFLDEYKRGRTPNPDVMCNREIKFGEFLQKAID 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD LATGHY R + K + R +D +DQ+YFL Q QL FP+GD+ Sbjct: 120 LGADYLATGHYARVERTANGETK----LLRGVDSNKDQTYFLHQLDQSQLAKAMFPIGDL 175 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI--ALEGDIVHL-NGQI 252 K VR +A E GL A K DS +CF+ + + K+ +G A G ++ L +G+ Sbjct: 176 PKPEVRRIAEEAGLATAKKKDSTGVCFIGERNF----KQFLSGYLPAQPGPMIDLRSGET 231 Query: 253 LGRHNGIINYTIGQRR---GLGVAMGEPLFVV--YLDKNSSRVIVGPRES-LEVHRIYLR 306 G+H+G++ YT+GQR+ G GEP FV L++N V+ G + L R+ Sbjct: 232 KGQHDGLMYYTLGQRQGLGIGGSGNGEPWFVADKDLERNILYVVQGDSHARLYSERLTAE 291 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQAC 365 INW+ E + C K R Q V V + DG+ V F++ + + GQA Sbjct: 292 GINWISPNRPEGPIT----CTAKFRYRQADQGVTVTLSADGMAEVVFDQPQKAITPGQAV 347 Query: 366 VFYTSDSNEARVLGGGII 383 VFY D LGGG I Sbjct: 348 VFYDGDI----CLGGGTI 361 >gi|284007318|emb|CBA72670.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arsenophonus nasoniae] Length = 364 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 132/374 (35%), Positives = 207/374 (55%), Gaps = 32/374 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + + C A D+ DA+ VCD Sbjct: 3 KVIVGMSGGVDSSVSAYLLKQQGYQVAGLFMKNW---EEDDNEEYCAAATDLADAQSVCD 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 +++ + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 60 KLDIELHTVNFAAEYWDNVFAHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLAADY 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + G R + R +D +DQSYFL+ Q QL FP+G+++K +V Sbjct: 120 IATGHYARCKTVNG-----RHQLLRGLDNNKDQSYFLYTLDQAQLAQSLFPIGELEKSTV 174 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+GL A K DS ICF+ + K+ D + R A G I+ ++G+ILG H+G++ Sbjct: 175 RRIAEEIGLITAKKKDSTGICFIGERKFRDFLARYLP--AKPGVIITVDGKILGEHSGLM 232 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ A +P +VV D ++R+IV PR L + +++I+W Sbjct: 233 YHTLGQRKGLGIGGVKEANDDPWYVVDKDIKNNRLIVAQGHNHPR--LMSTGLIVQQIHW 290 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYT 369 + A+ + + VK R Q +P + Q +D+ + V F+ V GQ+ VFY Sbjct: 291 IN----PPALNETNQYTVKTRYRQPDIPCTIKQLSDNKIIVQFDYPIAAVTPGQSAVFYQ 346 Query: 370 SDSNEARVLGGGII 383 + LGGG+I Sbjct: 347 GEI----CLGGGVI 356 >gi|256390508|ref|YP_003112072.1| tRNA-specific 2-thiouridylase MnmA [Catenulispora acidiphila DSM 44928] gi|256356734|gb|ACU70231.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Catenulispora acidiphila DSM 44928] Length = 358 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 139/375 (37%), Positives = 200/375 (53%), Gaps = 24/375 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA ++ G++V GV L L +R+A R G+ CC +D +DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARVRDAGHEVTGVHLALSRNRQA-LRDGARGCCTIEDSHDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + Y++D +RF VI F + Y AG TP PC+ CN +KF+ +L R LG Sbjct: 60 AADMLGIPFYIWDMSDRFHEDVIDDFVAEYQAGRTPNPCLRCNEKIKFAAVLDKARALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 DV+ATGHY +RL G G + R D +DQSY L QL FPLGD K Sbjct: 120 DVVATGHY--ARLLDGPHGPE---LHRAADPAKDQSYVLGVLDADQLAHSLFPLGDDTKP 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +VR A E GL +A K DS D+CF+ G + + G IV G+ +G H+G Sbjct: 175 AVRAEAAERGLYVAKKPDSHDVCFIPDGDTKAYLAKTLG--TSSGPIVDSEGRRVGEHDG 232 Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +TIGQRRGL + G P +V+ + ++ V VG E L+V + ++ W G Sbjct: 233 AWGFTIGQRRGLRIGDPAGDGRPRYVLDISPVTNTVTVGTAEELDVTGLSGIKLRWCG-- 290 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + +C ++R+ +PVP +R+ D + V + G+A GQA V Y + Sbjct: 291 ---PEFIGRIECHAQLRAHGEPVPATAERSGPDSIDVVLHEPVRGLAPGQAAVLY----D 343 Query: 374 EARVLGGGIISGSKR 388 RV+G ++ + R Sbjct: 344 GTRVIGSATVAQTSR 358 >gi|227524073|ref|ZP_03954122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227088812|gb|EEI24124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus hilgardii ATCC 8290] Length = 374 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 138/377 (36%), Positives = 202/377 (53%), Gaps = 26/377 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSVVA LLK+ GYDVIGV ++ ++ + G C A +D D +V + Sbjct: 8 RVVVGMSGGVDSSVVAYLLKQQGYDVIGVFMKNWDD---TDENGVCTATEDYKDVAKVAN 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F Y G TP P V CN+ +KF L +LGAD + Sbjct: 65 KIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPDPDVICNKEIKFKAFLDYALELGADYI 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY ++L +DG + R D +DQ+YFL + QL + FP+G++ K VR Sbjct: 125 ATGHY--AQLTRDEDGHNH--LLRASDGNKDQTYFLSQLSANQLDRVMFPIGNLVKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++AR+ GL ADK DS ICF+ + + + A G ++ ++G++ G+H+G++ Sbjct: 181 EIARKAGLATADKKDSVGICFIGEKNFKQFLGHYLP--ATPGKMMTVDGEVKGQHDGLMY 238 Query: 262 YTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314 YTIGQRRGLG+ +P FV+ D + + VG E L + +I+W+ + Sbjct: 239 YTIGQRRGLGIGGDGVDNQPWFVIGKDLKKNILYVGKGYHNELLYADYLEASDIHWVNN- 297 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDS 372 D D F C K R Q V V +DDG V VDF+ + GQA VFY + Sbjct: 298 --LDRGQD-FHCTAKFRYRQRDTGVTVHLSDDGQKVRVDFDAPVRAITPGQAVVFYDGE- 353 Query: 373 NEARVLGGGIISGSKRS 389 LG II + + Sbjct: 354 ---ECLGSAIIDAAYKQ 367 >gi|320449214|ref|YP_004201310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermus scotoductus SA-01] gi|320149383|gb|ADW20761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermus scotoductus SA-01] Length = 372 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 138/373 (36%), Positives = 196/373 (52%), Gaps = 36/373 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-----RKG----SCCAGQD 72 +V+VAMSGGVDSSV A LLK GY+V+G ++ + KG SCC + Sbjct: 3 KVLVAMSGGVDSSVSAYLLKEAGYEVVGAMMRFWPEEPPRPTLDIPHKGRAWESCCTPEA 62 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 Y+ARRV + +++ Y+ DY E F +I PF YA G TP PC CN VKF LL Sbjct: 63 AYEARRVAEILDIPFYLLDYRETFEEEIIQPFLKDYAQGRTPNPCARCNTFVKFGALLKQ 122 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 ++LG D +ATGHY+R + + R +D +DQSYFL+ T ++ L L FP+ Sbjct: 123 AQRLGLDYVATGHYVR---------REGESLLRGIDPLKDQSYFLWGTPKEALPHLLFPV 173 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNGQ 251 G M K VR LA GL A K +SQ++CFV + +R+ G +V L G+ Sbjct: 174 GGMTKAEVRALAERAGLPTARKPESQNLCFVAGDLKEFLRERLE---VRPGPLVDALTGE 230 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 ++G H G YTIGQR+GLG+ +VV +D ++ V VGPRE+ + E N Sbjct: 231 VVGEHQGASLYTIGQRKGLGLFKPHLERYVVGVDPLANVVYVGPREATLWLGLEGEEANL 290 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 L + L E+ V++R PV V+ + + + + F V GQ+ VFY Sbjct: 291 LAE-LPEEVE-------VQVRYRTPPVRAKVE-SLNPLRLRFATPVFAVTPGQSAVFYQG 341 Query: 371 DSNEARVLGGGII 383 + R+LGG +I Sbjct: 342 E----RLLGGAVI 350 >gi|251798335|ref|YP_003013066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paenibacillus sp. JDR-2] gi|247545961|gb|ACT02980.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paenibacillus sp. JDR-2] Length = 377 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 144/378 (38%), Positives = 204/378 (53%), Gaps = 29/378 (7%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+ ++ RVVV MSGGVDSSV A LLK+ GYDV+G+ ++ ++ + G C A +D D Sbjct: 3 KSKQETRVVVGMSGGVDSSVTALLLKQQGYDVVGIFMKNWDD---TDEFGHCTAEEDAED 59 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 RRVCD I + +Y ++E+++ + V F Y G TP P V CNR +KF D L + Sbjct: 60 VRRVCDQIGIPYYTVNFEKQYFDKVFTYFLDEYKRGRTPNPDVMCNREIKFGDFLKKANE 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD LATGHY +R+ +DG+ R + R +D +DQ+YFL A Q+QL FP+G + Sbjct: 120 LGADYLATGHY--ARVERNEDGETR--LLRGVDGNKDQTYFLSALNQKQLEKAMFPIGHL 175 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI--ALEGDIVHL-NGQI 252 K VR +A E GL A K DS +CF+ + + K +G A GD+V + +G++ Sbjct: 176 PKPEVRRIAEEAGLYTAKKKDSTGVCFIGERNF----KEFLSGYLPARPGDMVDIRSGEV 231 Query: 253 LGRHNGIINYTIGQRR---GLGVAMGEPLFVV--YLDKNSSRVIVG-PRESLEVHRIYLR 306 GRH+G++ YT+GQR+ G GEP FV L++N V+ G SL + Sbjct: 232 KGRHDGLMYYTLGQRQGLGIGGSGNGEPWFVADKDLERNILYVVQGESHPSLYSTGLTAS 291 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQAC 365 +NW+ E F+C K R Q V V + DG V F+ + + GQA Sbjct: 292 GMNWIAPLRPEGT----FRCTAKFRYRQPDQGVSVTLHTDGTAEVVFDYPQKAITPGQAV 347 Query: 366 VFYTSDSNEARVLGGGII 383 V Y D L GG I Sbjct: 348 VLYDGDV----CLAGGTI 361 >gi|331701087|ref|YP_004398046.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus buchneri NRRL B-30929] gi|329128430|gb|AEB72983.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus buchneri NRRL B-30929] Length = 374 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 140/377 (37%), Positives = 200/377 (53%), Gaps = 26/377 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSVVA LLK+ GYDVIGV ++ ++ + G C A +D D +V + Sbjct: 8 RVVVGMSGGVDSSVVAYLLKQQGYDVIGVFMKNWDD---TDENGVCTATEDYKDVAKVAN 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F Y G TP P V CN+ +KF L +LGAD + Sbjct: 65 KIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPDPDVICNKEIKFKAFLDYALELGADYI 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY ++L DG + R D +DQ+YFL + QL + FP+G++ K VR Sbjct: 125 ATGHY--AQLTRDADGHNH--LLRASDGNKDQTYFLSQLSADQLDRVMFPIGNLVKPDVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +ARE GL ADK DS ICF+ + + + + A G ++ ++G++ G+H+G++ Sbjct: 181 KIAREAGLATADKKDSVGICFIGEKNFKNFLGHYLP--ATPGKMMTVDGEVKGQHDGLMY 238 Query: 262 YTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314 YTIGQRRGLG+ +P FVV D + + VG L + +I+W+ + Sbjct: 239 YTIGQRRGLGIGGDGVDNQPWFVVGKDLKQNILYVGKGYHNPLLYADYLEASDIHWVNN- 297 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDS 372 D D F C K R Q V V +DDG V VDF+ + GQA VFY D Sbjct: 298 --LDRGKD-FHCTAKFRYRQKDTGVTVHISDDGQSVRVDFDAPVRAITPGQAVVFYDGD- 353 Query: 373 NEARVLGGGIISGSKRS 389 LG II + + Sbjct: 354 ---ECLGSAIIDAAYKQ 367 >gi|284097781|ref|ZP_06385771.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Poribacteria sp. WGA-A3] gi|283830707|gb|EFC34827.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Poribacteria sp. WGA-A3] Length = 372 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 138/372 (37%), Positives = 193/372 (51%), Gaps = 29/372 (7%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-------KASKRKGSCCAGQDVYDARRV 79 MSGGVDSSV A LL GYDV GVTLQ++ K + +G C G AR V Sbjct: 1 MSGGVDSSVAALLLTEQGYDVQGVTLQVWEPEDDNAAVTKKWEERGCCKVGL----ARHV 56 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + H V D E FR VI F + Y G TP PCV CN VKF L + + G D Sbjct: 57 AGRLGIPHEVVDTRETFRKNVIDDFVAGYLGGTTPNPCVRCNEWVKFGGLYELAKDRGID 116 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY +R+ D+G + R D ++DQSYFL+ L + FP+G ++K Sbjct: 117 FVATGHY--ARVVPVDEGVG---LFRGADGKKDQSYFLYRLPAAWLPHILFPVGHLQKTE 171 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 V A E+ L + +SQ+ICFV QG Y + G + G+ +G H GI Sbjct: 172 VWARAEELDLPADEMKESQEICFVTQGDYRTFLTEEAPQALRPGPFLDPEGRKIGEHRGI 231 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE-- 317 YT GQR+GLG+A GE L+V ++ ++ V++G E L ++++NWL D L E Sbjct: 232 AFYTPGQRKGLGIARGERLYVKEVNPETNAVVLGRAEDLSRQTCTVQDVNWLADTLPETL 291 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEAR 376 D V +K R + V VQ + G ++F++ + ++ GQ+ V Y +D R Sbjct: 292 DHVA------IKYRYASPAVSGQVQPHTAGTLSIEFKEPQQALSPGQSLVLYQAD----R 341 Query: 377 VLGGGIISGSKR 388 VLGGGII +R Sbjct: 342 VLGGGIIQPFER 353 >gi|290957209|ref|YP_003488391.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Streptomyces scabiei 87.22] gi|260646735|emb|CBG69832.1| putative tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Streptomyces scabiei 87.22] Length = 376 Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 146/390 (37%), Positives = 204/390 (52%), Gaps = 28/390 (7%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAG 70 ++ + P+ +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G+ CC Sbjct: 3 EIPQRPRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 61 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 +D DARR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 62 EDSRDARRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALL 121 Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 LG D + TGHY +++ V +DG R + R D+ +DQSY L +QL F Sbjct: 122 DKALALGFDAVCTGHY--AQVIVREDGTRE--LHRASDMAKDQSYVLGVLDDRQLAHAMF 177 Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVH 247 PLGD K+ +R A GL +A K DS DICF+ G + R+ EGDIV Sbjct: 178 PLGDTVTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLANRLGRS---EGDIVD 234 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 +G +LG H G YTIGQR+GL + G+P +V+ + ++ V VGP SL+V + Sbjct: 235 ESGTVLGTHEGAFGYTIGQRKGLRIGTPASDGKPRYVLDISPVNNTVTVGPASSLDVEAL 294 Query: 304 YLREINWLGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362 W G A G + ++R+ V + D + V F + GVA G Sbjct: 295 TAIRPRWCG------AAPTGPGTYTAQLRAHGGETEVRAEPVDGTLEVSFTEPVRGVAPG 348 Query: 363 QACVFYTSDSNEARVLGGGIISGSKRSDAV 392 QA V Y + RV+G I+ + R+ A Sbjct: 349 QAIVLY----DGTRVVGSATIASTTRAGAA 374 >gi|78776909|ref|YP_393224.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfurimonas denitrificans DSM 1251] gi|123550559|sp|Q30SP2|MNMA_SULDN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|78497449|gb|ABB43989.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfurimonas denitrificans DSM 1251] Length = 341 Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 132/367 (35%), Positives = 206/367 (56%), Gaps = 37/367 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR--RV 79 +V++ MSGGVDS+V A LK +GY+V G+ ++L+ S ++++AR + Sbjct: 4 KVLLGMSGGVDSTVSAMFLKEEGYEVEGLYMKLH----------SNPGYHEIHEARARKA 53 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + +V D +E F V PF +YA G+TP PC CNR++KF ++L ++GAD Sbjct: 54 ADFLGIKLHVIDLQEIFNEKVFKPFVDTYAKGKTPNPCALCNRSLKFGEMLKFAYKIGAD 113 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHYI++ DGK D +DQSYFLF ++ L L FPLGD KK Sbjct: 114 FVATGHYIKT------DGK---YFYEADDDTKDQSYFLFYVNKEILPRLLFPLGDRKKSE 164 Query: 200 VRDLAREM-GL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 +++LA + GL A + +S +ICFV+ Y D+++ + G+++ +G+++G H Sbjct: 165 IKELAASINGLATFASQRESSEICFVET-TYTDLLQDY-VEVDKVGEVLDTSGKVVGEHK 222 Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G ++YTIG+RRG V +P +VV ++ + +++IVG +E L + + L +N D Sbjct: 223 GYMHYTIGKRRGFSVNGAHDPHYVVSINPDKNQIIVGKKEDLACNSVVLNNLNLYSDE-- 280 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 F VK+R +P V DD +V ++S GVA GQA VFY D N + Sbjct: 281 -----KSFDTTVKLRYRTKAIPCHVDIIDDKAHVTLKESVFGVAVGQAAVFY--DGN--K 331 Query: 377 VLGGGII 383 +LGGG I Sbjct: 332 LLGGGWI 338 >gi|149376379|ref|ZP_01894142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Marinobacter algicola DG893] gi|149359393|gb|EDM47854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Marinobacter algicola DG893] Length = 386 Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 135/383 (35%), Positives = 201/383 (52%), Gaps = 23/383 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K P++ RV+V MSGGVDSSV A LLK GY V G+ ++ ++ ++ C A D+ Sbjct: 1 MTKAPENTRVIVGMSGGVDSSVAAWLLKDQGYQVEGLFMKNWDEDDGTE---YCTAMTDL 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DAR V +TI ++ + + + + V F S Y AG TP P + CN+ VKF L Sbjct: 58 ADARAVAETIGITLHTASFAAEYWDRVFEHFLSEYKAGRTPNPDILCNKEVKFRAFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R R DDG + + +D +DQSYFL A + +++ FP+G Sbjct: 118 ITLGADYIATGHYTRQRPL--DDGSGGAELLKGLDPNKDQSYFLHAVSGERIARTLFPVG 175 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR +A E G DK DS ICF+ + K+ D +K+ A G+I +GQ++ Sbjct: 176 ELEKPEVRRIAAEQGFITHDKKDSTGICFIGERKFRDFLKQYIP--AQPGNIETPDGQVI 233 Query: 254 GRHNGIINYTIGQRRGLGVA-----MGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLR 306 GRH G++ +TIGQR+GLG+ EP +V L +N + G L R + Sbjct: 234 GRHQGLMYHTIGQRQGLGIGGLSEFGDEPWYVAEKDLSRNVLVAVQGKHHPLLFSRGLIS 293 Query: 307 -EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 ++W+ +A F+C K R Q V +G V F+ ++ V GQ+ Sbjct: 294 GPVDWIAG----EAPAAEFRCKAKTRYRQPDQDCTVTVLGNGFRVVFDDAQRAVTPGQSV 349 Query: 366 VFYTSDSNEARVLGGGIISGSKR 388 VFY + LGGG+I + R Sbjct: 350 VFYRDEV----CLGGGVIEQTWR 368 >gi|294815245|ref|ZP_06773888.1| tRNA-specific 2-thiouridylase mnmA [Streptomyces clavuligerus ATCC 27064] gi|294327844|gb|EFG09487.1| tRNA-specific 2-thiouridylase mnmA [Streptomyces clavuligerus ATCC 27064] Length = 381 Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 146/380 (38%), Positives = 200/380 (52%), Gaps = 26/380 (6%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYD 75 P+ +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G+ CC +D D Sbjct: 6 PRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRD 64 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 ARR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 65 ARRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALA 124 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD- 194 LG D + TGHY + + DG R + R D+ +DQSY L ++QL FPLGD Sbjct: 125 LGFDAVCTGHY--ATVVTLPDGGRE--LHRASDMAKDQSYVLGVLDERQLAHAMFPLGDT 180 Query: 195 -MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQI 252 K+ +R A GL +A K DS DICF+ G + R+ EGDIV +G Sbjct: 181 LTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGRA---EGDIVDESGTR 237 Query: 253 LGRHNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 LG H G +TIGQR+GL + A G+P +V+ + +RV VGP E+L+V + Sbjct: 238 LGTHEGAYGFTIGQRKGLRIGHPAADGKPRYVLDISPVDNRVTVGPAEALDVVGLTAIRP 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 W G A ++R+ PV + DG+ V+F + GVA GQA V Y Sbjct: 298 RWCG-----TAPAGAGAYTAQLRAHGGETPVTAEPVGDGLRVEFAEPVRGVAPGQAIVLY 352 Query: 369 TSDSNEARVLGGGIISGSKR 388 + RV+G I+ ++R Sbjct: 353 ----DGTRVVGSATIASTRR 368 >gi|260577537|ref|ZP_05845477.1| probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium jeikeium ATCC 43734] gi|258604341|gb|EEW17578.1| probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium jeikeium ATCC 43734] Length = 389 Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 142/384 (36%), Positives = 199/384 (51%), Gaps = 46/384 (11%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84 MSGGVDS+V A+ G++VIGV L L S +A R GS CC+ +D DARRV D + Sbjct: 1 MSGGVDSAVAASRALEAGHEVIGVHLALSQSPEAV-RAGSRGCCSLEDSADARRVADKLG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV+D+ +RF+ VI F SYA GETP PC+ CN +KF LL + LG D + TG Sbjct: 60 IPFYVWDFSDRFKADVIDDFVDSYAIGETPNPCLRCNEKIKFEALLDRSIALGFDAVVTG 119 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY +RL+ G +M R +D +DQSY L T +QL FP+GD K +R+ A Sbjct: 120 HY--ARLHDG-------VMRRGVDANKDQSYVLGVLTDEQLAHCMFPVGDTIKPEIREEA 170 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHNGIINYT 263 ++ G +A K DS DICF+ G+ + K+I L D +G + H+G+ +T Sbjct: 171 KDHGFGVASKPDSHDICFIPDGQTQAFLGKKIGLRPGLMKD---QDGSTVAEHDGVYGFT 227 Query: 264 IGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 IGQR+GLG+ G+P +V +D + V +G R+ L V I + L D Sbjct: 228 IGQRKGLGLPREGLDGKPRYVTDIDAATGTVTIGQRDDLRVGGITADRLKRL------DP 281 Query: 320 VVDG--FKCFVKIRSSQDPVPVFVQRNDDG------------------VYVDFEKSEVGV 359 V G F+C V++R+ VP + DD + +D + GV Sbjct: 282 AVHGREFECEVQVRAHGGVVPATARLVDDPERTTPAGRVKKEGESPWRLELDLHEPLQGV 341 Query: 360 ASGQACVFYTSDSNEARVLGGGII 383 A GQA V Y D+ +LG G I Sbjct: 342 ARGQAAVVYQPDAEGDILLGSGTI 365 >gi|311694977|gb|ADP97850.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [marine bacterium HP15] Length = 395 Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 197/379 (51%), Gaps = 23/379 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + RV+V MSGGVDSSV A LLK GY V G+ ++ ++ ++ C A D+ DA+ V Sbjct: 15 NTRVIVGMSGGVDSSVAAWLLKDQGYQVEGLFMKNWDEDDGTEY---CTAMTDLADAQAV 71 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + + + + + V F S Y AG TP P + CN+ VKF L LGAD Sbjct: 72 ADAIGIKLHTASFAAEYWDRVFEHFLSEYQAGRTPNPDILCNKEVKFRAFLDYAITLGAD 131 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R G GK + + + +D +DQSYFL A + ++ FP+G+++K Sbjct: 132 YIATGHYARQRPIAGSTGKAQ--LLKGLDPNKDQSYFLHAVSGDRIARTLFPVGELEKPE 189 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A + G DK DS ICF+ + K+ D +K+ A GDI +GQ +GRH G+ Sbjct: 190 VRRIAEQQGFVTHDKKDSTGICFIGERKFKDFLKQYLP--AQPGDIETPDGQKIGRHQGL 247 Query: 260 INYTIGQRRGLGVA-----MGEPLFVVY--LDKNSSRVIVGPRESLEVHR-IYLREINWL 311 + +TIGQR+GLG+ EP +V L +N + G L R + I+W+ Sbjct: 248 MYHTIGQRQGLGIGGLSEFGDEPWYVAEKDLSRNVLVAVQGKHHPLLFSRGLVSGPIDWV 307 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 +A F+C K R Q V D GV VDF+ ++ V GQ+ VFY + Sbjct: 308 AG----EAPAGHFRCKAKTRYRQPDQDCQVLLIDGGVRVDFDDAQRAVTPGQSVVFYDGE 363 Query: 372 SNEARVLGGGIISGSKRSD 390 LGGG+I + R D Sbjct: 364 V----CLGGGVIEQTWRDD 378 >gi|315638313|ref|ZP_07893494.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter upsaliensis JV21] gi|315481660|gb|EFU72283.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter upsaliensis JV21] Length = 338 Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 130/369 (35%), Positives = 201/369 (54%), Gaps = 36/369 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++VAMSGGVDS+V A LK+ G++VIG ++L+ S +++ +V Sbjct: 1 MKILVAMSGGVDSTVTAYKLKQAGHEVIGCYMKLHGK--------SGYHEENIAKVEKVA 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + +++ D +E F+ V +PF ++Y G+TP PC CNR +K LL + LG + Sbjct: 53 KFLQIPYHILDLQEDFKAKVYMPFINTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY +RL G + +D +DQSYFL ++ L L FPLG+MKKE V Sbjct: 113 LATGHY--ARLENG-------CIKVAVDESKDQSYFLANANKEALQYLIFPLGEMKKEDV 163 Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 + A E+ A + +S +ICFV + Y DV+++ ++G+++ +G+++G HNG Sbjct: 164 KKFASTIEVLKSFATQKESSEICFV-ENTYVDVLEQF-MDTKIKGEVLDSSGKVVGEHNG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V EP FV+ ++ ++++VG +E L+ L IN D Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKENQIVVGTKEELKTKEFKLENINLFIDK--- 278 Query: 318 DAVVDGFKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 F C VKIR VP V V N + + ++ G+ASGQ VFY D Sbjct: 279 ----KAFNCEVKIRYRSKSVPCEVLVDENLNA-QISLKEPVYGLASGQMAVFYEED---- 329 Query: 376 RVLGGGIIS 384 RV+ G IS Sbjct: 330 RVIASGFIS 338 >gi|172040408|ref|YP_001800122.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium urealyticum DSM 7109] gi|229486339|sp|B1VFZ9|MNMA_CORU7 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|171851712|emb|CAQ04688.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium urealyticum DSM 7109] Length = 406 Score = 213 bits (541), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 148/393 (37%), Positives = 205/393 (52%), Gaps = 46/393 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRVV AMSGGVDS+V AA G++VIGV L L S +A R GS CC+ +D DARR Sbjct: 1 MRVVAAMSGGVDSAVAAARALEAGHEVIGVHLALSQSPEAV-RAGSRGCCSLEDSADARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ +RF+ VI F SYA GETP PC+ CN +KF LL + LG Sbjct: 60 VADKLGIPFYVWDFSDRFKADVIDNFVDSYAIGETPNPCLRCNEKIKFEALLDRSIALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGHY ++L+ G ++ R +D ++DQSY L T +QL FP+GD K Sbjct: 120 DAVVTGHY--AQLHDG-------VLRRGVDADKDQSYVLGVLTDEQLAHCMFPVGDTVKP 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHN 257 +R+ A + G +A+K DS DICF+ G+ + + I L +V G+ + H+ Sbjct: 171 EIREEAADAGFGVANKPDSHDICFIPDGR---TQAFLGSKIGLRPGLVRDTGGETVAEHD 227 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+ +T+GQR+GLG+ G P +V +D ++ V VG RE L V I + L Sbjct: 228 GVYGFTVGQRKGLGLPRETLDGRPRYVTDIDAHTGTVTVGTREDLRVGGIIADRLKRL-- 285 Query: 314 GLFEDAVVDG--FKCFVKIRSSQDPVPVFVQRNDDGVYVDF-----EKSEV--------- 357 D V G F C V++R+ VP + DD V E E+ Sbjct: 286 ----DPEVHGREFDCEVQVRAHGGVVPARARLVDDPTPVTPAGRVKEADELPWRLELELL 341 Query: 358 ----GVASGQACVFYTSDSNEARVLGGGIISGS 386 GVA GQA V Y D + +LG G I + Sbjct: 342 QPLEGVARGQAAVVYRPDEDGDILLGSGTIRAT 374 >gi|116334036|ref|YP_795563.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, PP-loop ATPase [Lactobacillus brevis ATCC 367] gi|122269280|sp|Q03QJ0|MNMA_LACBA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|116099383|gb|ABJ64532.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, PP-loop ATPase [Lactobacillus brevis ATCC 367] Length = 375 Score = 213 bits (541), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 138/378 (36%), Positives = 197/378 (52%), Gaps = 33/378 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSVVA LK+ GYDVIGV ++ ++ + G C A +D D +V Sbjct: 8 RVVVGMSGGVDSSVVALRLKQQGYDVIGVFMKNWDD---TDENGVCTATEDYKDVAKVAA 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F Y G TP P V CN+ +KF L +LGAD + Sbjct: 65 KIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPNPDVICNKEIKFKAFLDYALELGADYI 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + D+ +M R +D +DQ+YFL + +QL + FP+GD+ K VR Sbjct: 125 ATGHYAQ---LTRDEAGHAHLM-RAVDQNKDQTYFLSQLSTEQLDRVMFPIGDLVKPQVR 180 Query: 202 DLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 ++A+E GL A+K DS ICF+ ++G + D +K A GD++ ++G+I G H G++ Sbjct: 181 EIAKEAGLATAEKKDSMGICFIGEKGHFKDFLKTYLPAKA--GDMMTVDGEIKGHHAGLM 238 Query: 261 NYTIGQRR----GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR+ G EP FV+ D + + VG L + +I+W+ Sbjct: 239 YYTIGQRKGLGIGGDGIDNEPWFVIGKDLQKNILYVGKGYHNPHLYATHLSASDIHWVN- 297 Query: 314 GLFEDAVVD---GFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFY 368 +D F C K R Q V V NDDG V V+F+ + GQA VFY Sbjct: 298 ------TIDRGSDFHCTAKFRYRQKDTGVTVHLNDDGQQVTVEFDDPARAITPGQAVVFY 351 Query: 369 TSDSNEARVLGGGIISGS 386 D LG II + Sbjct: 352 NGD----ECLGSAIIDAA 365 >gi|218295964|ref|ZP_03496744.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermus aquaticus Y51MC23] gi|218243702|gb|EED10230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermus aquaticus Y51MC23] Length = 371 Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 135/373 (36%), Positives = 194/373 (52%), Gaps = 40/373 (10%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-------SRKASKRKGSCCAGQDVYD 75 V+VAMSGGVDSSV A LLK GY+V+G ++ + A++ SCC Y+ Sbjct: 5 VLVAMSGGVDSSVSAYLLKEAGYEVVGAMMRFWPDLPPVSLETGAARAWESCCTPDAAYE 64 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 ARRV D + + Y+ DY E F A+I PF YA G TP PC CN VKF LL R+ Sbjct: 65 ARRVADLLGIPFYLLDYREVFEEAIIAPFLEDYARGRTPNPCARCNTFVKFGALLKQARR 124 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LG D +ATGHY+R + + R +D E+DQSYFL+ T ++ L L FP+G + Sbjct: 125 LGLDYVATGHYVR---------REGEALLRGLDKEKDQSYFLWGTPKEALPHLLFPVGHL 175 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K+ VR +A+E GL A K +SQ++CFV + +R+ A D+ L G+++G+ Sbjct: 176 TKKEVRQIAQEAGLPTARKPESQNLCFVAGDLKGFLKERLKARPGPLVDV--LTGEVVGQ 233 Query: 256 HNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H G YT+GQR+GLG+ +VV LD + V VGP+E+ L +G Sbjct: 234 HEGASLYTLGQRKGLGLWKTHLERYVVGLDVERNVVYVGPKEAA------------LWEG 281 Query: 315 L----FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 + + V++R PV V+ + + + F V GQ+ FY Sbjct: 282 MEAEGENLLEELPEEVEVQVRYRTPPVRAVVESSSP-LCLRFLTPVFAVTPGQSAAFYRG 340 Query: 371 DSNEARVLGGGII 383 + R+LGG +I Sbjct: 341 E----RLLGGAVI 349 >gi|149276507|ref|ZP_01882651.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pedobacter sp. BAL39] gi|149233027|gb|EDM38402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pedobacter sp. BAL39] Length = 353 Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 124/363 (34%), Positives = 195/363 (53%), Gaps = 17/363 (4%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDARRVCDTIN 84 MSGGVDSSV A +L GY+VIG+T++ Y + +S ++ CC+ + DAR + Sbjct: 1 MSGGVDSSVAAVMLHEQGYEVIGLTMKTWDYATSGSSSKETGCCSLDSINDARTLAVNYG 60 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 HY+ D + F + VI F Y AG TP PCV CN +K+ LL +L + +ATG Sbjct: 61 FPHYILDIRDEFGDYVIDNFVDEYLAGRTPNPCVLCNTHIKWEALLKRANKLDCEFIATG 120 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY R + D+G R ++ + +D +DQSY L+ +Q+ L +FPLG K +R +A Sbjct: 121 HYANVRQH--DNG--RHVISKGLDENKDQSYVLWGVSQENLARTKFPLGSFAKSEIRQMA 176 Query: 205 REMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILGRHNGII 260 +MG ++A KS+S +ICFV Y ++ + G+ + +G ++G+H G Sbjct: 177 LDMGQEELAKKSESYEICFVPDNDYRSFLRHKVGDLEERVAGGNFITSDGMVVGQHKGYP 236 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQR+GLG+A GEP+FV + S+ V++G + LE +R +N + +E+ + Sbjct: 237 FYTIGQRKGLGIAFGEPMFVTKILPESNTVMLGRADELERGEALVRNLNLIK---YENIL 293 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 KIR + + D + V F+ + +A GQ+ VFY + +LGG Sbjct: 294 NPMDDVITKIRYKDAGTLSTIVQEKDKMRVVFDHAVSAIAPGQSAVFYEGND----LLGG 349 Query: 381 GII 383 G + Sbjct: 350 GFL 352 >gi|257125311|ref|YP_003163425.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Leptotrichia buccalis C-1013-b] gi|257049250|gb|ACV38434.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Leptotrichia buccalis C-1013-b] Length = 364 Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 129/380 (33%), Positives = 201/380 (52%), Gaps = 29/380 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K D +VVV MSGG+DSSV A LLK+ GY+VIGVTL+ + +CC+ D+ Sbjct: 1 MNKKLDDKKVVVGMSGGIDSSVAALLLKQQGYEVIGVTLKHLPDELSENPGKTCCSLDDI 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DAR C + + HYV + E F+ V+ F Y AG+TP PCV C+ VK L+ Sbjct: 61 NDARYTCYNLGIPHYVLNVVEEFKKDVMEYFIKMYNAGKTPSPCVICDEKVKIKKLVEFA 120 Query: 134 RQLGADVLATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 ++G ++TGHY + + + + D R +DQ+Y L+ + + F Sbjct: 121 DKMGIKYISTGHYSKVSENNMLLWDKNNR-----------KDQTYMLYRLDKDIVERFLF 169 Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250 PL + +K VR++AR+ G+ +K DSQ ICF G Y +K++ +G+ V NG Sbjct: 170 PLAEYEKSEVREIARQNGIHTHNKPDSQGICFAPNG-YIPFLKKVLGNDVKKGNFVDKNG 228 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 +I+G H G YTIGQRRGLG+ +G+P FV+ L ++ V+VG E L + I + IN+ Sbjct: 229 KIIGEHIGYQFYTIGQRRGLGLNLGKPFFVLELRPETNEVVVGDFEELLIKEIEV--INY 286 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV------QRNDDGVYVDFEKSEVGVASGQA 364 E+ + G K + R S + + + N++ + +F++ + GQ Sbjct: 287 KFHYSLENII--GKKLTARPRFSSKGLTGELKILKNEESNENRIIFEFDEKTHENSEGQH 344 Query: 365 CVFYTSDSNEARVLGGGIIS 384 VFY +D ++GGG I Sbjct: 345 IVFYLNDE----IVGGGEIK 360 >gi|308062619|gb|ADO04507.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori Cuz20] Length = 342 Score = 212 bits (540), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 129/370 (34%), Positives = 203/370 (54%), Gaps = 36/370 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78 M++ V +SGGVDSS A LK G++++G+ L+L+ S K D+Y +A++ Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG Sbjct: 51 ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + + R + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 111 EKIATGHYARVK-----EIDRVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165 Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++ LA +G + +SQ+ICFV++ Y D +K+ + + EG + +L G+I+G Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222 Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G + YTIG+R+G V EP FVV +D + +IVG +E L H + + + D Sbjct: 223 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKD 282 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F++ + F+K R P FV D+ + V+FE+ GVA GQA V Y D Sbjct: 283 --FKNG-----EYFIKARYRSVPAKAFVSLKDEAIEVEFEEPFYGVAKGQALVVYKDDI- 334 Query: 374 EARVLGGGII 383 +LGGG+I Sbjct: 335 ---LLGGGVI 341 >gi|302522058|ref|ZP_07274400.1| tRNA methyl transferase [Streptomyces sp. SPB78] gi|302430953|gb|EFL02769.1| tRNA methyl transferase [Streptomyces sp. SPB78] Length = 382 Score = 212 bits (540), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 145/385 (37%), Positives = 203/385 (52%), Gaps = 26/385 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQD 72 + +P+ +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G+ CC +D Sbjct: 3 ETSPRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIED 61 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DARR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 62 SRDARRAADVIGIPFYVWDLAERFREDVVDDFVAEYEAGRTPNPCLRCNEKIKFAALLDK 121 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 LG D + TGHY +R+ DG R + R D+ +DQSY L +QL FPL Sbjct: 122 ALALGFDAVCTGHY--ARVLTHPDGSRE--LHRASDMAKDQSYVLGVLDDRQLAHAMFPL 177 Query: 193 GDMK--KESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLN 249 GD + K+ +R A GL +A K DS DICF+ G + R+ EGDIV + Sbjct: 178 GDTETTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGTA---EGDIVDES 234 Query: 250 GQILGRHNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 G LG H G +TIGQR+GL + A G+P +V+ + + V VGPRESL+V + Sbjct: 235 GTRLGTHQGAYGFTIGQRKGLRIGHPAADGKPRYVLDISPVDNTVTVGPRESLDVASLTA 294 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 W G A + + ++R+ V + D + V F+ GVA GQA Sbjct: 295 VRPRWCG-----TAPLTAGRYTAQLRAHGGECEVRAELAGDELRVAFDAPVRGVAPGQAV 349 Query: 366 VFYTSDSNEARVLGGGIISGSKRSD 390 V Y + RV+G I+ +++ + Sbjct: 350 VLY----DGTRVVGSATIATTRKPE 370 >gi|194476611|ref|YP_002048790.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Paulinella chromatophora] gi|171191618|gb|ACB42580.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Paulinella chromatophora] Length = 434 Score = 212 bits (540), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 129/373 (34%), Positives = 202/373 (54%), Gaps = 29/373 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 L P ++ V +SGGVDSS+ AALL + G+ V G+TL L + KG+CC+ + + Sbjct: 38 LKNAPNKQKIAVGLSGGVDSSLAAALLVKAGWQVEGLTLWLMSG------KGTCCS-EGL 90 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-V 132 DA +C+ +N+ H++ D E F+ ++ Y +G TPLPC CNR VKF +L Sbjct: 91 LDAVGICEQLNIPHHIVDSREHFQKQIVAFLLRGYESGVTPLPCSRCNREVKFPLMLGWA 150 Query: 133 TRQLGADVLATGHYIR-------SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 R+ G +ATGHY R L + K R + R +D ++DQSYFL+ +Q+ L Sbjct: 151 ERERGIRKIATGHYARIVDKEDELNLDIPGLSKGRYKLLRGVDYQKDQSYFLYDLSQEIL 210 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGD 244 L FPLG++ K R A+ L+ A+K +SQD+C +N+ + + G+ Sbjct: 211 SSLIFPLGELTKVETRLEAKRYNLNTANKPESQDLCLADHHGSMKAF--LNSYLPSRTGE 268 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 IV +G ILG H+GI ++T+GQR+GL +A EPL+VV +D + ++VIVG R + Sbjct: 269 IVLSDGTILGHHDGIEHFTVGQRKGLKIAWKEPLYVVKIDASRNQVIVGSRNDVAYKSCL 328 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQD-----PVPVFVQ-RNDDGVY---VDFEKS 355 + INW+ + A+ + V+ RS + P+P + +N + Y + F + Sbjct: 329 VGAINWVSIAPPKKAI--DVEVQVRYRSKPEFARLIPLPFTITDQNAERPYRCRLIFHHN 386 Query: 356 EVGVASGQACVFY 368 + + GQA VFY Sbjct: 387 QFSITPGQAAVFY 399 >gi|223041130|ref|ZP_03611385.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter rectus RM3267] gi|222877624|gb|EEF12750.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter rectus RM3267] Length = 338 Score = 212 bits (540), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 131/367 (35%), Positives = 210/367 (57%), Gaps = 34/367 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++++AMSGGVDS++ A +L GY+V+G ++L+ K+ G Q++ R C Sbjct: 1 MKILMAMSGGVDSTMGAKMLLEAGYEVVGCYMKLH------KKPGY--HEQNIGKVARAC 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + ++++V D ++ F V PF +Y G TP PC CNR +KF +LL + +G + Sbjct: 53 EYLGINYHVIDLQDEFDRYVYTPFVGAYKEGRTPNPCALCNRFIKFGELLKFAKSIGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHYIR + DG R D +DQSYF+ ++ + D+ FPLGD K+ + Sbjct: 113 LATGHYIRVQ-----DGLIR----VAADPSKDQSYFVAQVPKEIIADMIFPLGDKFKKDI 163 Query: 201 RDLAREMG--LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 ++LA+ + + ++++S +ICFV+ Y +V+ + + L GD+V G+++GRHNG Sbjct: 164 KELAKSLPSFREYGEQAESSEICFVED-TYIEVLNK-HYETDLPGDVVDSAGRVIGRHNG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V EP FV+ +D ++R++VGP+E LE +I + +N LF Sbjct: 222 YMHYTIGKRRGFEVFGAHEPHFVLAIDAANNRIVVGPKEELERGKIAVNSLN-----LFI 276 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEAR 376 D F C VK+R + V+ + G V+ ++S GVASGQ VFY + Sbjct: 277 DE--SEFDCDVKVRYRSIGLNAHVKVLEGGTAEVELKQSAFGVASGQLAVFYRGE----L 330 Query: 377 VLGGGII 383 V+G G I Sbjct: 331 VIGSGFI 337 >gi|255322034|ref|ZP_05363184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter showae RM3277] gi|255301138|gb|EET80405.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter showae RM3277] Length = 338 Score = 212 bits (540), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 129/367 (35%), Positives = 208/367 (56%), Gaps = 34/367 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++++AMSGGVDS++ A +L G++V+G ++L+ ++ ++ R C Sbjct: 1 MKILMAMSGGVDSTMSAKMLLEAGHEVVGCYMKLHKKPGYHEK--------NIDKVARAC 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + ++V D +E+F V PF SSY G+TP PC CN +KF +LL + +G + Sbjct: 53 GYLGIPYHVLDLQEQFDRYVYTPFVSSYKEGKTPNPCALCNHFIKFGELLKFAKSIGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHYIR + DG R D +DQSYF+ ++ + D+ FPLGD K+ + Sbjct: 113 LATGHYIRVQ-----DGLIR----VAADPSKDQSYFVAQVPKEIIADMIFPLGDKFKKDI 163 Query: 201 RDLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 ++LA+ + + ++++S +ICFV+ Y +V+ + + L GD+V G+++GRH+G Sbjct: 164 KELAKSLPSFREYGEQAESSEICFVED-TYIEVLNK-HYETDLPGDVVDSAGRVIGRHSG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V EP FV+ +D ++R++VGP+E LE +I + +N LF Sbjct: 222 YMHYTIGKRRGFEVFGAHEPHFVLAIDAQNNRIVVGPKEELERGKIAVNSLN-----LFV 276 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEAR 376 D F C VK+R + V+ D G V+ ++S GVASGQ VFY + Sbjct: 277 DE--SEFDCDVKVRYRSIGLNAHVKVLDGGTAEVELKQSAFGVASGQLAVFYRGE----L 330 Query: 377 VLGGGII 383 V+G G I Sbjct: 331 VIGSGFI 337 >gi|158319927|ref|YP_001512434.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alkaliphilus oremlandii OhILAs] gi|205811148|sp|A8MEV9|MNMA_ALKOO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|158140126|gb|ABW18438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alkaliphilus oremlandii OhILAs] Length = 364 Score = 212 bits (540), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 135/363 (37%), Positives = 199/363 (54%), Gaps = 23/363 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K PKD +VV+ MSGGVDSSV A LLK+ GYDV+G+ ++ ++ S G C + +D Sbjct: 1 MSKAPKDTKVVIGMSGGVDSSVAALLLKQQGYDVVGIFMKNWDE---SDELGYCTSAEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RRVCD I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 58 EDVRRVCDQIGIPYYSVNFEKEYWDRVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLDHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +LGAD LATGHY + DG+ R + R +D +DQ+YFL Q QL FP+G Sbjct: 118 IKLGADYLATGHYAQVDY---SDGEYR--LLRGVDTNKDQTYFLNQLNQYQLSKAMFPVG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K+ +R +A + GL A K DS ICF+ + + + + N A G I+ L+G++ Sbjct: 173 HLQKKDLRQIALDAGLATASKKDSTGICFIGERNFKEFLS--NYLPAKPGKIISLDGEVK 230 Query: 254 GRHNGIINYTIGQRR---GLGVAMGEPLFVV--YLDKNSSRVIVG-PRESLEVHRIYLRE 307 G+H+G++ YT+GQR+ G GEP FVV L+KN V G SL + + Sbjct: 231 GKHDGLMYYTLGQRKGLGIGGAGTGEPWFVVDKDLEKNILYVTQGETHPSLYSRGLIGAD 290 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 + W+ E+ KC K R Q V V+V+ + V F++ + + GQA Sbjct: 291 LQWVS----ENPKPSVIKCTAKFRYRQPDQGVTVYVEEGNT-CRVMFDEPQKAITPGQAV 345 Query: 366 VFY 368 VFY Sbjct: 346 VFY 348 >gi|183599450|ref|ZP_02960943.1| hypothetical protein PROSTU_02929 [Providencia stuartii ATCC 25827] gi|188021697|gb|EDU59737.1| hypothetical protein PROSTU_02929 [Providencia stuartii ATCC 25827] Length = 367 Score = 212 bits (540), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 132/375 (35%), Positives = 203/375 (54%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V+G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVVGLFMKNWEEDDDEEY---CSAATDLADAQSVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F S Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGIELHTINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R D + + R +D +DQSYFL+ + Q+ FP+G+++K V Sbjct: 125 IATGHYVRRR-----DVNGKSQLLRGLDNNKDQSYFLYTLSYAQIAKSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+GL A K DS ICF+ + K+ D + R A G IV ++G+ +G+H G++ Sbjct: 180 RRIAEEVGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVTVDGETIGQHEGLM 237 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ EP +VV D ++R+IV PR L + ++++W Sbjct: 238 YHTLGQRKGLGIGGMKEGSDEPWYVVDKDVENNRLIVAQGHEHPR--LMSTGLIAQQLDW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + + + +C VK R Q +P V +DG V V F+ V GQ+ VFY Sbjct: 296 VD----REPLTQTLRCAVKTRYRQADIPCTVTPLNDGKVEVIFDYPVAAVTPGQSAVFYL 351 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 DEV----CLGGGIIE 362 >gi|326381518|ref|ZP_08203212.1| tRNA-specific 2-thiouridylase MnmA [Gordonia neofelifaecis NRRL B-59395] gi|326199765|gb|EGD56945.1| tRNA-specific 2-thiouridylase MnmA [Gordonia neofelifaecis NRRL B-59395] Length = 362 Score = 212 bits (539), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 147/380 (38%), Positives = 201/380 (52%), Gaps = 31/380 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G++V+GV L L ++ + R GS CC+ +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVEAGHEVVGVHLAL-STAPGALRTGSRGCCSREDADDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ +RF+ VI F ++YAAGETP PC+ CN +KFS L LG Sbjct: 60 AADLLGIPFYVWDFADRFKEDVIDEFVAAYAAGETPNPCLSCNEKIKFSALAERAVALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D L TGHY R DG+ RR +D ++DQSY L QQL FP+GD K Sbjct: 120 DALVTGHYARLA-----DGELRRA----VDADKDQSYVLAVLDHQQLSRAMFPVGDTPKP 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQG---KYFDVVKRINAGIALEGDIVHLNGQILGR 255 +R+ A GL +A+K DS DICF+ G + + G ++G G L Sbjct: 171 RIREEAERRGLAVANKPDSHDICFIPTGDTRAFLGARIGVRPGAVVDG----ATGDTLAE 226 Query: 256 HNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 H+G+ +TIGQR+GLG+ A G P +V +D +S V VG LEV I W Sbjct: 227 HDGVHGFTIGQRKGLGIEAPAADGHPRYVTGIDPDSGTVTVGTAADLEVTSISANRAVWT 286 Query: 312 GDGLFEDAVVDGFKCFVKIRSS---QDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVF 367 E V +C V++R+ V V D G+ +D + GVA GQA V Sbjct: 287 SGRTPEGPV----ECIVQVRAHGGLAQAVATPVDTPDGPGIQIDLREPLRGVARGQAAVL 342 Query: 368 YTSDSNEARVLGGGIISGSK 387 Y D+ +V+G G I+GS+ Sbjct: 343 YVPDAAGDQVIGCGRITGSE 362 >gi|325833497|ref|ZP_08165946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eggerthella sp. HGA1] gi|325485421|gb|EGC87890.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eggerthella sp. HGA1] Length = 352 Score = 212 bits (539), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 138/364 (37%), Positives = 198/364 (54%), Gaps = 25/364 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+ + MSGGVDS+V AALL R GY+V+GVT + ++ + DA VC Sbjct: 6 RIALGMSGGVDSAVSAALLMRAGYEVVGVTCRFRDNAATERAA---------ADAAAVCS 56 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H + F V+ PF SSYAAG TP PCV CN K L+ V +LG D + Sbjct: 57 QLGIRHETPECVGEFERCVVEPFVSSYAAGLTPSPCVGCNARCKMPALVRVADELGCDRI 116 Query: 142 ATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY R +RL D G R ++ R +D +DQSY L +Q+QL L PLG M K V Sbjct: 117 ATGHYARIARL--SDSG--RFVVKRALDARKDQSYMLSLLSQEQLARLVLPLGAMTKAEV 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL +A+K++SQD CF+ +G Y ++ A GDIV G +LG H G+ Sbjct: 173 RVIAADLGLVVAEKAESQDNCFI-EGDYRPFLRARGVEDA-PGDIVDRMGNVLGCHEGLA 230 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 NYT+GQR+G+GVA EP +VV + ++VG + + + + ++NW FE ++ Sbjct: 231 NYTVGQRKGIGVAGPEPYYVVEKRVETRELVVGFADETLIGSVVVGDMNWQA---FE-SL 286 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + + VK+R P ++ DD V + + A GQ V Y D+ VLG Sbjct: 287 GESYGAMVKLRYRSRPCACIIEPEDDQRVSLALRSPQPTTAPGQYAVLYDGDT----VLG 342 Query: 380 GGII 383 GG+I Sbjct: 343 GGMI 346 >gi|205822461|sp|A6W7K7|MNMA_KINRD RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 365 Score = 212 bits (539), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 147/377 (38%), Positives = 192/377 (50%), Gaps = 27/377 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G++V+GV + L N + R GS CC +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVDAGHEVVGVHMAL-NRSPGTLRTGSRGCCTIEDALDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D E F V+ F + YAAG TP PCV CN +KF+ LL LG Sbjct: 60 AADLLGIPFYVWDLSEDFVEDVVADFVAEYAAGRTPNPCVRCNERIKFAALLDKGIALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197 D +ATGHY +R+ G DG R + R D +DQSY L Q+ FPLGD K Sbjct: 120 DAVATGHY--ARVVTGPDG--RAELHRAADAAKDQSYVLAVLDADQVAHAMFPLGDAPTK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR A GL +A K DS DICF+ G + + G++V +G++LG H Sbjct: 176 AEVRAEAERRGLPVASKPDSHDICFIPDGDTRGFLADKLGEV--PGEVVDESGEVLGTHT 233 Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G YT+GQR+GLG+ A G P +V+ ++ V VGP E L V + E W Sbjct: 234 GTYGYTVGQRKGLGISRPAADGRPRYVLSIEPVRRTVTVGPAERLSVGALEAVEAVW--- 290 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN---DDGVY-VDFEKSEVGVASGQACVFYT 369 DA V + V++R+ +PVP + DD V V GVA GQ Y Sbjct: 291 --NADAPVGPVEVHVQVRAHGEPVPAVAELTGPADDPVLRVRLRTPLSGVAPGQTVAVYR 348 Query: 370 SDSNEARVLGGGIISGS 386 RVLG ISG+ Sbjct: 349 G----TRVLGSATISGT 361 >gi|326330731|ref|ZP_08197035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nocardioidaceae bacterium Broad-1] gi|325951572|gb|EGD43608.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nocardioidaceae bacterium Broad-1] Length = 374 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 155/391 (39%), Positives = 197/391 (50%), Gaps = 46/391 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRVV AMSGGVDS+V AA K G+DV GV L L + AS R G+ CC +D DARR Sbjct: 3 MRVVAAMSGGVDSAVAAARAKEAGHDVTGVHLAL-SRNPASYRSGARGCCTIEDANDARR 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D I + YV+D +RF V+ F S YA G TP PC+ CN +KF+ +L LG Sbjct: 62 AADVIGIPFYVWDLSDRFHEDVVEDFMSEYAEGRTPNPCLRCNEKIKFAAVLDRALALGF 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R +D + R +D +DQSY L Q QL FPLGD K Sbjct: 122 DAVATGHYATLR----EDADGLVELHRAVDGGKDQSYVLGVLDQDQLRHSLFPLGDTPKP 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE----------GDIVHL 248 VR+ A GL +ADK DS DICFV G NAG E G IV Sbjct: 178 LVREEAARRGLLVADKPDSHDICFVADGD--------NAGWLREKLGDRAPNESGPIVDE 229 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 G++LG H G YTIGQR+GL + G+P FV+ ++ S V VGPRE L V + Sbjct: 230 TGEVLGEHQGTYAYTIGQRKGLRLGKPAPDGKPRFVLDIEPVSGTVTVGPREHLAVDGLS 289 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDP-------VPVFVQRNDDGVYVDFEKSEV 357 W G + V++G V++R+ D VP D V ++ Sbjct: 290 GIRPRWAGRA--PEGVLEG---TVQLRAHGDEHRARVTVVPTG-STTDAEVEIELLDPAY 343 Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGSKR 388 G+A GQA V Y + RV+G IS ++R Sbjct: 344 GIAPGQAAVIY----DGTRVVGSATISTTRR 370 >gi|148242801|ref|YP_001227958.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. RCC307] gi|205828978|sp|A5GUP6|MNMA_SYNR3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|147851111|emb|CAK28605.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. RCC307] Length = 383 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 135/383 (35%), Positives = 203/383 (53%), Gaps = 33/383 (8%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 L P + RV V +SGGVDSS+ AALL+ + V G+TL L + KG+CCA + + Sbjct: 19 LQAWPGEHRVAVGLSGGVDSSLTAALLRDAQWQVEGLTLWLMSG------KGACCA-EGL 71 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-V 132 DA +C+ + + H+V D + F+ ++ Y G TPLPC CNR VKF +L Sbjct: 72 VDAAGLCEELEIPHHVVDSRDTFQQEIVQFLVQGYGDGITPLPCSRCNRAVKFGPMLDWA 131 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 ++ G +ATGHY +RL DG R +++ R +D +DQSYFL+ Q L L FPL Sbjct: 132 EKERGITRVATGHY--ARLRPNADGGRTQLL-RGLDARKDQSYFLYDLPQAVLQRLIFPL 188 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNGQ 251 G++ K R A +GL A+K +SQD+C + + ++A + G+IV +G+ Sbjct: 189 GELTKPDTRAEAARLGLRTAEKPESQDLCLADH--HGSMKAFLDAYLPERPGEIVLTDGR 246 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 ++G+H+GI ++TIGQR+GLGVA EPL VV LD ++V+V PR + +NW+ Sbjct: 247 VVGQHDGIEHFTIGQRKGLGVAWSEPLHVVRLDGAMNQVVVAPRAEAARGDAVVGAVNWV 306 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDP-----VPVFVQRNDDGVY------VDFEKSEVGVA 360 D + V++R P P+ +D +DF + + + Sbjct: 307 SI----DPPAEPLDVEVQVRYRSAPERARLTPLPPVESDHQAERPHRCRLDFAEEQFSIT 362 Query: 361 SGQACVFYTSDSNEARVLGGGII 383 GQA VFY + LGGG+I Sbjct: 363 PGQAAVFYDGEV----CLGGGLI 381 >gi|253682565|ref|ZP_04863362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum D str. 1873] gi|253562277|gb|EES91729.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum D str. 1873] Length = 346 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 127/370 (34%), Positives = 199/370 (53%), Gaps = 38/370 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V + +SGGVDSSV A LLK GYD+IG+T+++ + + DA ++ Sbjct: 4 KVAIGLSGGVDSSVAAYLLKEKGYDLIGITMKVSDVDVSE-------------DAAKIAQ 50 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +++ D + F+N VI FA Y G TP PC CN+ +KF LL ++LGAD + Sbjct: 51 KLDIPYHILDLRDEFKNHVIDNFAKEYLQGRTPNPCAMCNKYIKFGVLLQKAKELGADYI 110 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + G R ++ D ++DQ+Y ++ TQ L + P G+ K +R Sbjct: 111 ATGHYARVEEHNG-----RYLVLNAKDDKKDQTYMFYSLTQDVLKHILMPCGEYTKVQIR 165 Query: 202 DLAREMGLDIADKSDSQDICFV---QQGKYFDVVK---RINAGIALEGDIVHLNGQILGR 255 ++AR + L++ DK +S DICF+ GKY ++ RI G+ V G ILG+ Sbjct: 166 EIARNLDLEVHDKKESMDICFIPDNDHGKYIQSLECKDRIKP-----GNFVDKQGNILGK 220 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H G+I YTIGQR+GLG+++G+P FVV + + V+VG + + ++IN++ Sbjct: 221 HKGLIYYTIGQRKGLGLSLGKPGFVVDIIPERNEVVVGDESEIFNSGLIAKDINFIP--- 277 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374 D++ + + KIR S + ++G V V FE + + GQ VFY D Sbjct: 278 -FDSLENPMEVEAKIRYSTTKSKATIIPFEEGKVKVVFEDKQRAITKGQRVVFYIQD--- 333 Query: 375 ARVLGGGIIS 384 +LGGG I Sbjct: 334 -MLLGGGTIE 342 >gi|297380515|gb|ADI35402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori v225d] gi|308064111|gb|ADO05998.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori Sat464] Length = 342 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 128/370 (34%), Positives = 203/370 (54%), Gaps = 36/370 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78 M++ V +SGGVDSS A LK G++++G+ L+L+ S K D+Y +A++ Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG Sbjct: 51 ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + + + + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 111 EKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165 Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++ LA +G + +SQ+ICFV++ Y D +K+ + + EG + +L G+I+G Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222 Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G + YTIG+R+G V EP FVV +D + +IVG +E L H + + + D Sbjct: 223 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKD 282 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F++ + F+K R P FV D+ + V+FE+ GVA GQA V Y D Sbjct: 283 --FKNG-----EYFIKARYRSVPTKAFVSLKDEAIEVEFEEPFYGVAKGQALVVYKDDI- 334 Query: 374 EARVLGGGII 383 +LGGG+I Sbjct: 335 ---LLGGGVI 341 >gi|238897773|ref|YP_002923452.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465530|gb|ACQ67304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 364 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 130/376 (34%), Positives = 204/376 (54%), Gaps = 27/376 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N +VVV MSGGVDSSV A LL GY V G+ ++ + + + C A D+ D Sbjct: 3 NKNSKKVVVGMSGGVDSSVAAYLLLEQGYQVCGLFMKNW---EEDDNELYCAAAVDLSDT 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD +N+ + ++ + N V F + Y AG TP P + CN+ +KF L Q Sbjct: 60 QAVCDKLNIELHTVNFSAEYWNQVFTLFLAEYRAGRTPNPDILCNKEIKFKAFLEFALQD 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + G + + R +D +DQSYFL+ QQQL + FP+G + Sbjct: 120 LGADYIATGHYVRHQSNNG-----QHFLLRGIDENKDQSYFLYTIGQQQLANCLFPIGGL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 KK VRD+A+++ L A K DS ICFV + K+ D + + +G +G I+ ++G+ +G+ Sbjct: 175 KKSEVRDIAKKLNLVNAQKKDSTGICFVGERKFRDFLSQYLSG--QKGSIMTVDGKHIGQ 232 Query: 256 HNGIINYTIGQRRGLGV--AMGE---PLFVVYLDKNSSRVIVG--PRESLEVHR-IYLRE 307 H G++ +T+GQR+GLG+ GE P +VV D ++ ++V P L + + + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKGEGEAPWYVVDKDIKNNILLVAQNPLHPLLMSKGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 ++W+ ++C +K R Q+ + + D V FE V GQ+ VF Sbjct: 293 LHWVNS----PPTKSPYRCVLKTRYRQEDIRAEIIVEQDQSVVRFEHPVSSVTPGQSVVF 348 Query: 368 YTSDSNEARVLGGGII 383 Y ++ LGGGII Sbjct: 349 YQNE----LCLGGGII 360 >gi|46447434|ref|YP_008799.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase/ antisuppressor [Candidatus Protochlamydia amoebophila UWE25] gi|81626468|sp|Q6MA75|MNMA_PARUW RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|46401075|emb|CAF24524.1| probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase/ Antisuppressor [Candidatus Protochlamydia amoebophila UWE25] Length = 376 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 131/365 (35%), Positives = 199/365 (54%), Gaps = 19/365 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV MSGGVDSSV A L+K GY+VIG+ ++ + + + G C + QD D RRVCD Sbjct: 7 VVVGMSGGVDSSVSALLMKEQGYNVIGLFMKNWEEKDEN---GVCSSAQDYDDVRRVCDH 63 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 IN+ +Y ++ E +R V F + + G TP P + CNR +KF L +LGAD LA Sbjct: 64 INIPYYAVNFVENYRKQVFTQFIADFQKGWTPNPDILCNREIKFKVFLEKALELGADFLA 123 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY ++ + D G + + +D +DQ+YFL+ QQ L + FP+G ++K VRD Sbjct: 124 TGHYCQNLIL--DKGSPS--LVKGIDHNKDQTYFLYTLNQQILQQVLFPVGGLEKSQVRD 179 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGIIN 261 +AR+ L A+K DS ICF+ + + + + +A++ G L G+ +G+H G Sbjct: 180 IARKHQLVTAEKKDSTGICFIGERDFRSFLSQY---VAIQPGAFQTLQGKNVGKHMGTAY 236 Query: 262 YTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YT+GQR+GLG+ GE FVV K+ R IV + +Y E+ +A Sbjct: 237 YTLGQRKGLGIGGAGEAWFVV--GKDHERGIVFVEQGANHPALYCDELIATDLSWVAEAP 294 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + + C K+R Q+ + R ++G +V F++ + V GQ+ VFY + LG Sbjct: 295 LLPYTCQSKVRYRQNDQFCTIHRIENGKAFVTFDRPQRAVTPGQSIVFYVGNI----CLG 350 Query: 380 GGIIS 384 GG+I Sbjct: 351 GGVIQ 355 >gi|239982445|ref|ZP_04704969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces albus J1074] gi|291454292|ref|ZP_06593682.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces albus J1074] gi|291357241|gb|EFE84143.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces albus J1074] Length = 381 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 144/392 (36%), Positives = 205/392 (52%), Gaps = 26/392 (6%) Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--C 67 S + P+ +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G+ C Sbjct: 4 TSPRTENPPRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGC 62 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 C +D DARR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ Sbjct: 63 CTIEDSRDARRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFA 122 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 LL LG D + TGHY + + +DG R + R D+ +DQSY L ++QL Sbjct: 123 ALLDKALALGFDAVCTGHY--ATVVTREDGSRE--LHRASDMAKDQSYVLGVLDERQLAH 178 Query: 188 LRFPLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGD 244 FPLGD K+ +R A GL +A K DS DICF+ G + R+ EGD Sbjct: 179 ALFPLGDTLTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTRGFLAGRLGTA---EGD 235 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEV 300 I+ GQ +G H G YTIGQR+GL + A G+P +V+ + + V VGP +L+V Sbjct: 236 ILDEAGQKVGTHEGAYGYTIGQRKGLRIGTPAADGKPRYVLDISPVDNTVTVGPAAALDV 295 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360 + W G + ++R+ + PV + + + V F++ GVA Sbjct: 296 TGLTAIRPRWCG-----TPPEGSGRYTAQLRAHGEETPVTAEVREGELTVTFDEPVRGVA 350 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAV 392 GQA V Y + +RV+G I+ ++R+ AV Sbjct: 351 PGQAVVLY----DGSRVVGSATIAATRRAGAV 378 >gi|262039106|ref|ZP_06012439.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Leptotrichia goodfellowii F0264] gi|261746895|gb|EEY34401.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Leptotrichia goodfellowii F0264] Length = 365 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 129/373 (34%), Positives = 198/373 (53%), Gaps = 22/373 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +VV+ MSGGVDSSV A LLK GYDVIGV ++ + + + G C + +D D Sbjct: 2 RNKKVVLGMSGGVDSSVAAILLKEQGYDVIGVFMKNWEEKDDN---GVCMSEEDYKDVVA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + +Y ++ + + + V F Y G TP P V CN+ +KF L ++GA Sbjct: 59 VAEQLEIPYYSVNFVKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDYAMKIGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R ++ DGK + +M R +D +DQ+YFL Q+QL + FP+G+ K Sbjct: 119 DHVATGHYARI-IHEEKDGKIKSVMLRGIDDNKDQTYFLCQLNQKQLEKVLFPIGEYTKP 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A + L A K DS ICF+ + + + + + A G+IV G LG+HNG Sbjct: 178 QIREIAEKYNLKTAKKKDSTGICFIGERDFNEFLSKYLP--AKTGNIVDTKGNTLGKHNG 235 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLREINWL 311 ++ YTIGQR+G+G+ GEP FVV LD N V G L + + N++ Sbjct: 236 LMYYTIGQRKGIGIGNTKEGTGEPWFVVDKNLDTNELIVTQGDNSVLYSKGLIATDFNFI 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 +D + +C VK R Q D V + ND+ + F++ + + GQ V Y Sbjct: 296 N----KDELQFPLECTVKFRYRQKDAGAVINKLNDNEYEIIFDEPQKAITLGQIAVVYKG 351 Query: 371 DSNEARVLGGGII 383 + LGGG+I Sbjct: 352 E----ECLGGGVI 360 >gi|119503231|ref|ZP_01625315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [marine gamma proteobacterium HTCC2080] gi|119460877|gb|EAW41968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [marine gamma proteobacterium HTCC2080] Length = 363 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/380 (33%), Positives = 198/380 (52%), Gaps = 30/380 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 NP V+V MSGGVDSSV A LL+ GY V G+ ++ ++ + C A +D+ DA Sbjct: 3 NPSPSTVIVGMSGGVDSSVAALLLRDQGYRVEGLFMKNWDEDDGTDY---CTAKEDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V ++ + + ++ + + V F + Y +G TP P + CNR +KF L +L Sbjct: 60 EAVAASLGIKLHSANFAAEYWDGVFEHFLAEYQSGRTPNPDILCNREIKFRAFLDYATEL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY+R DD R + + +D ++DQSYFL ++L FP+GD+ Sbjct: 120 GADFIATGHYVRR-----DDSGERTALLKGLDPDKDQSYFLHQVGHRELSRSLFPVGDLA 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A + GL A K DS ICF+ + ++ D +++ A G I NGQ LG H Sbjct: 175 KPEVRKIAEQAGLTTARKKDSTGICFIGERRFKDFLQQYLP--AQPGVIEDTNGQALGEH 232 Query: 257 NGIINYTIGQRRGLGVA-----MGEPLFVV--YLDKNSSRVIVG---PRESLEVHRIYLR 306 G++ +TIGQR+GLG+ P +VV ++++N V G PR L H ++ Sbjct: 233 QGLMYHTIGQRQGLGIGGLADRNAAPWYVVEKHVERNVLIVAQGNDHPR--LYKHSLHAS 290 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 + W+ E A +C K+R Q V + G V+F+ + + GQ+ V Sbjct: 291 TLFWIS----EQAPTFPLQCTAKVRYRQPDQSCVVTKTASGFLVEFDVPQRAITPGQSVV 346 Query: 367 FYTSDSNEARVLGGGIISGS 386 FY +D+ +GGGII G+ Sbjct: 347 FYHNDT----CMGGGIIEGA 362 >gi|224372387|ref|YP_002606759.1| tRNA-specific 2-thiouridylase MnmA [Nautilia profundicola AmH] gi|223589875|gb|ACM93611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nautilia profundicola AmH] Length = 341 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 130/369 (35%), Positives = 201/369 (54%), Gaps = 34/369 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V +SGGVDS++ LLK GYDV+G+ ++++ ++V R+ Sbjct: 4 RVLVGVSGGVDSAMSVYLLKEQGYDVVGIYMKMHEGVNHV---------ENVAKLNRLSK 54 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D E+ FR V F SY G TP PC CN +KF + + G ++ Sbjct: 55 KLGFEYVIEDVEDEFRKEVYEYFVESYKQGITPNPCAMCNIKIKFGIFMGFLEKYGCELA 114 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R +DG+ + + D +DQSYFLF ++ L + FPLG+ K+ ++ Sbjct: 115 ATGHYVR------NDGE---FLYQAKDQSKDQSYFLFGIKKKVLPKILFPLGEYTKDEIK 165 Query: 202 DLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 LA E+GLD A + +SQDICF+ Y DV+K ++ +G +V+ GQ +G H G Sbjct: 166 KLASEIGLDEFASQKESQDICFIDNS-YIDVLK-LHFNPERKGKVVNKRGQKIGVHKGYS 223 Query: 261 NYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YT+GQR+G + +P +V+ +D S+ +IVG ++ LE +++L+ +N LF D Sbjct: 224 FYTVGQRKGFNLFKSHKPQYVIGIDAKSNTLIVGDKKDLEKKQVFLKGVN-----LFIDD 278 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 V F+C KIR VP V+ + V+F + GVA GQACVFY + ++L Sbjct: 279 KV--FECEAKIRYRAPKVPAVVKMESKSKAVVNFHEPVSGVAKGQACVFYEGE----KLL 332 Query: 379 GGGIISGSK 387 GGG I G + Sbjct: 333 GGGWIRGGR 341 >gi|299143928|ref|ZP_07037008.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518413|gb|EFI42152.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 355 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 135/364 (37%), Positives = 190/364 (52%), Gaps = 19/364 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V++ MSGGVDSSV AALLK GYDV V ++ ++ G C A +D D RVC Sbjct: 7 VILGMSGGVDSSVCAALLKEQGYDVTAVFMKNWDEEDDD---GVCTATEDYLDVIRVCSE 63 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + +Y ++E+ +++ V F S Y G TP P V CN +KF L + +D +A Sbjct: 64 LGIKYYTVNFEKEYKDRVFSYFLSEYEKGRTPNPDVMCNTEIKFKAFLEFAMKFNSDYIA 123 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 GHY R+ + DGK + R +D +DQSYFL + L FP+G+MKKE VR+ Sbjct: 124 MGHYART---LKKDGK--TYLLRGLDENKDQSYFLSRVPEAALSKTLFPIGNMKKEQVRE 178 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA++ L A K DS ICF+ + + + + + EGDI ++GQ LG+H+G+++Y Sbjct: 179 LAQKYNLATAKKKDSTGICFIGERNFNNFLDKF--LFTKEGDIYSVDGQYLGKHSGLMHY 236 Query: 263 TIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 TIGQRR G+ GEP FV D ++R+IV + L+ +Y +E D Sbjct: 237 TIGQRRGMGLGGMGSGEPFFVADKDLKNNRLIVA--QGLKHPALYKKETICENAFWITDT 294 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 KC KIR + V +D + V FE GV GQ VFY D LG Sbjct: 295 PKFPLKCTGKIRYRAKDENMTVYLENDELKVIFENPLKGVTPGQVLVFYQGDI----CLG 350 Query: 380 GGII 383 GII Sbjct: 351 SGII 354 >gi|317178074|dbj|BAJ55863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori F16] Length = 342 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 128/370 (34%), Positives = 203/370 (54%), Gaps = 36/370 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78 M++ V +SGGVDSS A LK G++++G+ L+L+ S K D+Y +A++ Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG Sbjct: 51 ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCTLCNPLMKFGLALDHALKLGC 110 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + + + + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 111 EKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165 Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++ LA +G + +SQ+ICFV++ Y D +K+ + + EG + +L G+I+G Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222 Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G + YTIG+R+G V EP FVV +D + +IVG +E L H + + + D Sbjct: 223 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKD 282 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F++ + F+K R P FV D+ + V+FE+ GVA GQA V Y D Sbjct: 283 --FKNG-----EYFIKARYRSVPTKAFVSLRDEAIEVEFEEPFYGVAKGQALVVYKDDI- 334 Query: 374 EARVLGGGII 383 +LGGG+I Sbjct: 335 ---LLGGGVI 341 >gi|315587224|gb|ADU41605.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori 35A] Length = 342 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 127/370 (34%), Positives = 203/370 (54%), Gaps = 36/370 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78 M++ V +SGGVDSS A LK G++++G+ L+L+ S K D+Y +A++ Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG Sbjct: 51 ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + + + + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 111 EKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165 Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++ LA +G + +SQ+ICFV++ Y D +K+ + + EG + +L G+++G Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEVIG 222 Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G + YTIG+R+G V EP FVV +D + +IVG +E L H + + + D Sbjct: 223 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKD 282 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F++ + F+K R P FV D+ + V+FE+ GVA GQA V Y D Sbjct: 283 --FKNG-----EYFIKARYRSVPAKAFVSLKDEAIEVEFEEPFYGVAKGQALVVYKDDI- 334 Query: 374 EARVLGGGII 383 +LGGG+I Sbjct: 335 ---LLGGGVI 341 >gi|146282652|ref|YP_001172805.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas stutzeri A1501] gi|166235074|sp|A4VLW2|MNMA_PSEU5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|145570857|gb|ABP79963.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas stutzeri A1501] Length = 375 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 132/377 (35%), Positives = 198/377 (52%), Gaps = 32/377 (8%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P+ RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ Sbjct: 9 PEKTRVIVGMSGGVDSSVSALLLLEQGYQVEGLFMKNWEEDDGTEY---CTAKEDLADAQ 65 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 VCD I + + ++ + + V F + Y AG TP P + CNR +KF L LG Sbjct: 66 AVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALMLG 125 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD++ATGHY+R R D R + + +D +DQSYFL A +QL FP+G+++K Sbjct: 126 ADLIATGHYVRRR-----DRDGRSELLKGLDPNKDQSYFLHAVGGEQLAKTLFPVGELEK 180 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR +A + L A K DS ICF+ + ++ D +K+ A G+I ++G+++GRH+ Sbjct: 181 PEVRAIAEKHSLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGNIEAVDGEVIGRHH 238 Query: 258 GIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G++ +TIGQR+GLG+ A EP +V+ D + +IVG L + EI Sbjct: 239 GLMYHTIGQRQGLGIGGLKDASDEPWYVLSKDLQRNVLIVGQGNDHPWLFSRALLASEIY 298 Query: 310 WLGDGLFEDAVVD---GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 W+ VD K K+R Q +++ DG FE + V GQ+ V Sbjct: 299 WVNP-------VDLSAPLKLTAKVRYRQSDQACTLEQTSDGYRAVFEVPQRAVTPGQSVV 351 Query: 367 FYTSDSNEARVLGGGII 383 FY + LGGG+I Sbjct: 352 FYDGEV----CLGGGVI 364 >gi|57241962|ref|ZP_00369902.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter upsaliensis RM3195] gi|57017154|gb|EAL53935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter upsaliensis RM3195] Length = 338 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 202/369 (54%), Gaps = 36/369 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++VAMSGGVDS+V A LK+ G++VIG ++L+ + +++ +V Sbjct: 1 MKILVAMSGGVDSTVTAYKLKKAGHEVIGCYMKLHGKPGYHE--------ENIAKVEKVA 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + +++ D +E F+ V +PF ++Y G+TP PC CNR +K LL + LG + Sbjct: 53 KFLQIPYHILDLQEDFKAKVYMPFINTYKEGKTPNPCALCNRFIKLGKLLEFAKNLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY +RL G + +D +DQSYFL ++ L L FPLG+MKKE V Sbjct: 113 LATGHY--ARLENG-------CIKVAVDESKDQSYFLANADKEALQYLIFPLGEMKKEDV 163 Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 + A E+ A + +S +ICFV+ Y DV+++ ++G+++ +G+++G HNG Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEN-TYVDVLEQF-MDTKIKGEVLDSSGKVVGEHNG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V +P FV+ ++ ++++VG +E L++ L IN D Sbjct: 222 YMHYTIGKRRGFEVRGAHDPHFVLKINPKENQIVVGTKEELKIKEFKLENINLFIDK--- 278 Query: 318 DAVVDGFKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 F C VKIR VP V V N + + ++ G+ASGQ VFY D Sbjct: 279 ----KAFNCEVKIRYRSKSVPCEVLVDENLNA-QISLKEPVYGLASGQMAVFYEED---- 329 Query: 376 RVLGGGIIS 384 RV+ G IS Sbjct: 330 RVIASGFIS 338 >gi|118496723|ref|YP_897773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. novicida U112] gi|194324030|ref|ZP_03057805.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. novicida FTE] gi|166234853|sp|A0Q454|MNMA_FRATN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|118422629|gb|ABK89019.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Francisella novicida U112] gi|194321927|gb|EDX19410.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. novicida FTE] Length = 359 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 134/374 (35%), Positives = 208/374 (55%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ Sbjct: 2 ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F Y AG TP P + CN+ +KF LS LG Sbjct: 59 VCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R+R V +DG + + + +D +DQ+YFL+ Q+QL FP+G+++K Sbjct: 119 DYIATGHYARTR--VLEDGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ + + + A +G+I NG +G H+G Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKFLP--AQKGEIHDENGIKIGMHDG 232 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINW 310 ++ YTIGQR+GLG+ + P F D +N+ + V + + + L+ E++W Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + G+ A D F+C K+R Q V+ N DG V V F++ + + GQ+ VFY Sbjct: 293 VA-GM---APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348 Query: 370 SDSNEARVLGGGII 383 D LGGG+I Sbjct: 349 DDV----CLGGGVI 358 >gi|313608681|gb|EFR84517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes FSL F2-208] Length = 371 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 136/383 (35%), Positives = 200/383 (52%), Gaps = 23/383 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + N D+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L Sbjct: 58 DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + VGD+ + + R +D +DQ+YFL +Q QL + FPLG Sbjct: 118 ESLGADYVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K VR++A++ GL A+K DS ICF+ + + + A G++ LNG++L Sbjct: 173 GMEKTEVREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLNGEVL 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP V D + + V E+L + +I+ Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWXXVGKDLKENVLFVEQGFHHETLYSDSLIATDIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368 + + + +C K R Q V V +DG V F + GQA VFY Sbjct: 291 FTTNAEKPKTI----ECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDA 391 D GGG I ++ A Sbjct: 347 DGDI----CFGGGTIDTVWKNGA 365 >gi|150391390|ref|YP_001321439.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alkaliphilus metalliredigens QYMF] gi|205811141|sp|A6TUB2|MNMA_ALKMQ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|149951252|gb|ABR49780.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alkaliphilus metalliredigens QYMF] Length = 369 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 137/383 (35%), Positives = 202/383 (52%), Gaps = 25/383 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K+PKD +VV+ MSGGVDSSV A LK GYDVIG+ ++ ++ G C A +D Sbjct: 1 MKKDPKDTKVVIGMSGGVDSSVAALKLKEQGYDVIGIFMKNWDE---PDEYGYCTAAEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RRVC+ I + +Y ++E+ + V F Y G TP P V CN+ +KF L Sbjct: 58 EDVRRVCEQIGIPYYTVNFEKEYWEKVFQYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +LGAD LATGHY + DG+ R + R +D +DQ+YFL Q QL FP+G Sbjct: 118 LKLGADYLATGHYAQVDY---KDGEYR--LLRGVDSNKDQTYFLNTLGQYQLSKAMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 + K+ VR++A L A K DS ICF+ + + + + + A G++ L+G + Sbjct: 173 HIDKKKVREMALAHDLVTAKKKDSTGICFIGERNFKEFLSQYLP--AQPGEMRDLSGNVK 230 Query: 254 GRHNGIINYTIGQRR---GLGVAMGEPLFVVYLD-KNSSRVIVGPRE--SLEVHRIYLRE 307 G+H+G++ +T+GQR+ G GEP FVV D KN+ +V + SL + + + Sbjct: 231 GKHDGLMYHTLGQRKGLGIGGSGSGEPWFVVSKDLKNNILYVVQGEDHPSLYTYGLLATD 290 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366 ++W+ E + F C K R Q V VQ D V F+ + V GQA V Sbjct: 291 LHWVS----EKEIPQTFTCTAKFRYRQPDQNVTVQLTGGDTCKVLFDGPQKAVTPGQAVV 346 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 FY ++ LGGGII + ++ Sbjct: 347 FYNGEA----CLGGGIIDETIKT 365 >gi|317490186|ref|ZP_07948674.1| tRNA methyl transferase [Eggerthella sp. 1_3_56FAA] gi|316910680|gb|EFV32301.1| tRNA methyl transferase [Eggerthella sp. 1_3_56FAA] Length = 352 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 136/364 (37%), Positives = 194/364 (53%), Gaps = 25/364 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+ + MSGGVDS+V AALL R GY+V+GVT + ++ + A VC Sbjct: 6 RIALGMSGGVDSAVSAALLMRAGYEVVGVTCRFRDNAATERAAAD---------AAAVCS 56 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H + F V+ PF SSYAAG TP PCV CN K L+ V +LG D + Sbjct: 57 QLGIRHETPECVGEFERCVVEPFVSSYAAGLTPSPCVGCNARCKMPALVRVADELGCDRI 116 Query: 142 ATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY R +RL D G R ++ R +D +DQSY L +Q+QL L PLG M K V Sbjct: 117 ATGHYARIARL--SDSG--RFVVKRALDARKDQSYMLSLLSQEQLARLVLPLGAMTKAEV 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL +A+K++SQD CF+ +G Y ++ A GDIV G +LG H G+ Sbjct: 173 RVIAADLGLVVAEKAESQDNCFI-EGDYRPFLRARGVEDA-PGDIVDRMGNVLGCHEGLA 230 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 NYT+GQR+G+GVA EP +VV + ++VG + + + + +NW A+ Sbjct: 231 NYTVGQRKGIGVAGPEPYYVVEKRVETRELVVGFADETLIGSVVVGGMNWQA----YPAL 286 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + + VK+R P ++ DD V + + A GQ V Y D+ VLG Sbjct: 287 GESYDAMVKLRYRSRPCACIIEPEDDQRVSLALRSPQPTTAPGQYAVLYDGDT----VLG 342 Query: 380 GGII 383 GG+I Sbjct: 343 GGMI 346 >gi|305432523|ref|ZP_07401685.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter coli JV20] gi|304444562|gb|EFM37213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter coli JV20] Length = 338 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 126/367 (34%), Positives = 201/367 (54%), Gaps = 34/367 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++VAMSGGVDS+V A LK G++VIG ++L+ + +++ +V Sbjct: 1 MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVA 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + +++ D +E F+N V +PF +Y G+TP PC CNR +K LL + LG + Sbjct: 53 NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R ++ +D +DQSYFL + ++ L L FPLG+MKKE V Sbjct: 113 LATGHYARL---------ENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163 Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 + A E+ A + +S +ICFV+ Y V+ + + G+++ +G+++G+H G Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQF-MDTKIPGEVLDSSGKVIGKHEG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V +P FV+ ++ +++IVG +E L+++ L+ IN LF Sbjct: 222 YMHYTIGKRRGFEVRGAHKPHFVLKINPKQNQIIVGTKEELKINEFKLKNIN-----LFI 276 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 DA C VKIR P V +DD + ++S G+ASGQ VFY D + Sbjct: 277 DA--KELDCEVKIRYRSKSTPCKVIISDDKSASISLKESVYGLASGQMAVFYDGD----K 330 Query: 377 VLGGGII 383 V+ G I Sbjct: 331 VIASGFI 337 >gi|226330495|ref|ZP_03806013.1| hypothetical protein PROPEN_04413 [Proteus penneri ATCC 35198] gi|225201290|gb|EEG83644.1| hypothetical protein PROPEN_04413 [Proteus penneri ATCC 35198] Length = 367 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 126/372 (33%), Positives = 202/372 (54%), Gaps = 28/372 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK GY V+G+ ++ + ++ C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLKEQGYQVVGLFMKNWEEDDDTEY---CSASTDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + Y ++ + + V F S Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGIELYTINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R D + + R +D +DQSYFL+ + +Q+ FP+G+M+K V Sbjct: 125 IATGHYVRRR-----DINGKSQLLRGVDNNKDQSYFLYTLSHEQIAQSLFPVGEMEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ D + R A G I+ ++G+ +G H G++ Sbjct: 180 RKIAEKLDLATAKKKDSTGICFIGERKFTDFLSRYLP--AKPGPIITVDGETIGEHQGLM 237 Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ +P +VV D +N+ ++ E + + L ++++W+ Sbjct: 238 YHTLGQRKGLGIGGTKDGGDDPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVS 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 + + + F+C VK R Q + V ++D + V F+ V GQ+ VFY + Sbjct: 298 ----REPITEAFRCTVKTRYRQPDIACTVTPLSEDKIEVRFDYPVAAVTPGQSAVFYQDE 353 Query: 372 SNEARVLGGGII 383 LGGGII Sbjct: 354 V----CLGGGII 361 >gi|169825283|ref|YP_001692894.1| 5-methylaminomethyl-2-thiouridylate- methyltransferase [Finegoldia magna ATCC 29328] gi|205816864|sp|B0S3R4|MNMA_FINM2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|167832088|dbj|BAG09004.1| 5-methylaminomethyl-2-thiouridylate- methyltransferase [Finegoldia magna ATCC 29328] Length = 366 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 127/353 (35%), Positives = 203/353 (57%), Gaps = 20/353 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 ++VVV +SGGVDSSV A LLK+ GYDV+G+ ++ ++ + G C A +D DA V Sbjct: 6 IKVVVGISGGVDSSVAALLLKQQGYDVVGIFMKNWDE---TDDDGVCTAEEDYKDAVAVA 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + I + +Y ++E+ + + V F Y G TP P + CN+ +KF L +LGAD Sbjct: 63 NEIGIDYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAMKLGADY 122 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY +R+ GDDG + + R +D +DQ+YFL TQ+Q+ ++ FP+G+++K+ V Sbjct: 123 VATGHY--ARIERGDDGVK---LLRGLDNNKDQTYFLSQLTQEQIKNVMFPVGELQKKEV 177 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A++ L ADK DS ICF+ + + + + A +G+IV ++G I+G+HNG++ Sbjct: 178 REIAKKYNLATADKKDSTGICFIGERNFNEFLSHYLP--AKQGNIVDVDGNIMGKHNGLM 235 Query: 261 NYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLGDGLF 316 +TIGQRRGLG+ G FV + ++ +IV E L +++Y + + L Sbjct: 236 YHTIGQRRGLGIGGDGAAWFVCGKNLATNELIVCQGEDNPLLYSNKLYASQFETSLNHLD 295 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 + F C K R Q + V+ DD V V ++ ++ V GQA VFY Sbjct: 296 RNE----FDCTAKFRYRQKDIKAHVKFIDDTHVEVTYDDTK-AVTPGQAAVFY 343 >gi|283955448|ref|ZP_06372946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni 414] gi|283793075|gb|EFC31846.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni 414] Length = 338 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 125/368 (33%), Positives = 198/368 (53%), Gaps = 34/368 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++VAMSGGVDS+V A LK G+++IG ++L+ + +++ +V Sbjct: 1 MKILVAMSGGVDSTVTAYKLKNLGHEIIGCYMKLHGKPNYHE--------ENIKKVEKVA 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + +++ D +E F+N V +PF +Y G+TP PC CNR +K LL + LG + Sbjct: 53 NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R ++ +D +DQSYFL + ++ L L FPLG+MKKE V Sbjct: 113 LATGHYARL---------ENNLIKTALDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163 Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 + A E+ A + +S +ICFV+ Y V+ + + G+++ G+++G+H G Sbjct: 164 KKFASTIEILKSFATQKESSEICFVEDT-YVQVLDQF-MDTKIPGEVLDNTGKVVGKHEG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V EP FV+ ++ +++IVG +E L++ L+ IN LF Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFSLKNIN-----LFI 276 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 DA C VKIR P V+ +DD + + G+ASGQ VFY D + Sbjct: 277 DA--KELDCEVKIRYRSKSTPCKVEIHDDKSAKITLKDPVYGLASGQMAVFYDDD----K 330 Query: 377 VLGGGIIS 384 V+ G I Sbjct: 331 VIASGFIE 338 >gi|330466187|ref|YP_004403930.1| tRNA-specific 2-thiouridylase MnmA [Verrucosispora maris AB-18-032] gi|328809158|gb|AEB43330.1| tRNA-specific 2-thiouridylase MnmA [Verrucosispora maris AB-18-032] Length = 351 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 141/366 (38%), Positives = 196/366 (53%), Gaps = 24/366 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84 MSGGVDS+V AA + G+DV GV L L + + + R G+ CC +D DARR D + Sbjct: 1 MSGGVDSAVAAARAVQAGHDVTGVHLALARNPQ-TYRTGARGCCTLEDSRDARRAADVLG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV+D +RF V+ F + YAAG TP PC+ CN +KF+ +L LG D + TG Sbjct: 60 IPFYVWDMADRFHADVVDDFVAEYAAGRTPNPCLRCNEKIKFAAVLDRAVALGFDAVVTG 119 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 H+ R +G DG ++ R +D +DQSY L T++QL FPLGD K VR A Sbjct: 120 HHAR----LGPDG----LLRRSVDEAKDQSYVLAVLTREQLDRSMFPLGDSTKAQVRQEA 171 Query: 205 REMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIV-HLNGQILGRHNGIINY 262 E GL +ADK DS DICF+ G + +R+ GD+V G ++G+H G Y Sbjct: 172 AERGLAVADKPDSHDICFIADGDTRGFLAQRLGES---PGDVVDATTGAVVGQHAGAYAY 228 Query: 263 TIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 TIGQRRGL + G P +V+ + ++ V VGP E+LEV + W G E Sbjct: 229 TIGQRRGLHLDRPAPDGRPRYVLSITPKTNTVTVGPAEALEVSTVSATRPVWTGGARPEQ 288 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + +C V++R+ VP V + D ++ D + GVA+GQA V Y D VL Sbjct: 289 PI----ECEVQLRAHGVVVPAVVTVDGDRLHADLRRPVRGVAAGQAIVAYRPDPAGDIVL 344 Query: 379 GGGIIS 384 G I+ Sbjct: 345 GSATIT 350 >gi|85059063|ref|YP_454765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sodalis glossinidius str. 'morsitans'] gi|123519587|sp|Q2NU15|MNMA_SODGM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|84779583|dbj|BAE74360.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Sodalis glossinidius str. 'morsitans'] Length = 369 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 135/378 (35%), Positives = 205/378 (54%), Gaps = 32/378 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DAR VCD Sbjct: 8 KVIVGMSGGVDSSVSAWLLQQQGYRVEGLFMKNWEE---DDNEEYCTAASDLADARAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 T+ ++ + ++ + + V F + Y G TP P + CN+ +KF L LGAD Sbjct: 65 TLGIALHTVNFAAEYWDNVFAHFLAEYQVGRTPNPDILCNKEIKFKAFLEFADDDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V +GK R + R +D +DQSYFL+ QL FP+G++ K V Sbjct: 125 IATGHYVR-RADV--NGKSR--LLRGLDDNKDQSYFLYTLGHAQLARCLFPIGELAKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ D + R G IV ++GQ +GRH G++ Sbjct: 180 RRIAADLGLATAAKKDSTGICFIGERKFRDFLGRYLP--VQPGAIVSVDGQEVGRHQGLM 237 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ +P +VV D + +R+IV PR L + +++W Sbjct: 238 YHTLGQRKGLGIGGTRDGSEDPWYVVDKDLDHNRLIVAQGHQHPR--LMSTGLTAGQLHW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + + + + +C VKIR Q + V DG + V F++ V GQ+ VFY Sbjct: 296 VE----REPLTEALRCTVKIRYRQPDIACLVTPQADGRLQVTFDQPVTAVTPGQSAVFYL 351 Query: 370 SDSNEARVLGGGIISGSK 387 ++ R LGGGII + Sbjct: 352 AE----RCLGGGIIEARQ 365 >gi|291004692|ref|ZP_06562665.1| tRNA-specific 2-thiouridylase MnmA [Saccharopolyspora erythraea NRRL 2338] Length = 356 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 137/369 (37%), Positives = 194/369 (52%), Gaps = 21/369 (5%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84 MSGGVDS+V AA G++V+GV L L +++ + R G+ CC +D +DARR D + Sbjct: 1 MSGGVDSAVAAARAVEAGHEVVGVHLAL-SAKPGTLRTGARGCCTIEDSHDARRAADILG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV+D+ ERF VI F YAAG TP PC+ CN +KF LL LG D + TG Sbjct: 60 IPFYVWDFAERFTEEVIETFVGEYAAGRTPNPCLTCNEKIKFEALLEKAMALGFDAVCTG 119 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY +RL V +DG ++ R D +DQSY L + T +QL FPLGD K VR A Sbjct: 120 HY--ARLTV-EDGV--PVLRRSRDEGKDQSYVLASLTAEQLGHSMFPLGDSLKSQVRQEA 174 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHL-NGQILGRHNGIINY 262 E GL +A K DS DICF+ G D K + + + + G +V G +LG H G+ + Sbjct: 175 AERGLAVAKKPDSHDICFIPDG---DTKKFLESKLGQKPGQLVDAETGAVLGEHTGVHGF 231 Query: 263 TIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 T+GQR+GLG+ G P +V+ L+ S V VG + L V I + W + Sbjct: 232 TVGQRKGLGIDAPAPDGRPRYVLSLEPVSGTVKVGSADHLGVTEIDAKRPIWPSQRELDG 291 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 +C V++R+ + D G+ + + GVA GQA V Y + VL Sbjct: 292 PT----ECVVQVRAHGGTADAVAEVADGGMSIRLRRPLRGVAPGQAVVLYRPEEEGDLVL 347 Query: 379 GGGIISGSK 387 G +I+ ++ Sbjct: 348 GSALIAATR 356 >gi|256544685|ref|ZP_05472057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaerococcus vaginalis ATCC 51170] gi|256399574|gb|EEU13179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaerococcus vaginalis ATCC 51170] Length = 369 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 132/368 (35%), Positives = 199/368 (54%), Gaps = 20/368 (5%) Query: 26 AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85 +SGGVDSSV A LLK++GYDV G+ ++ ++ + G C A D DA +VC+ I + Sbjct: 14 GVSGGVDSSVAALLLKKEGYDVSGIFMKNWDEEDEN---GVCTAEVDYEDAVKVCNQIGI 70 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145 +Y ++E+ + + V F Y G TP P + CN+ +KF L + LGAD LATGH Sbjct: 71 PYYSINFEKEYYDRVFSYFLDEYKKGRTPNPDIMCNKEIKFKAFLDYAKDLGADYLATGH 130 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y R D + M R +D +DQ+YFL +Q Q+ D+ FP+GD+ K+ VR +A+ Sbjct: 131 YARV-----DRSEGETKMLRGLDSNKDQTYFLSQLSQDQIKDVLFPVGDLDKKEVRKIAK 185 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 E L ADK DS ICF+ + + + + N A EG+IV +G I+G+H G++ +TIG Sbjct: 186 ENNLATADKKDSTGICFIGERNFNEFLS--NYLPAKEGNIVDTDGNIMGKHYGLMYHTIG 243 Query: 266 QRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGDGLFEDAVV 321 QRRGLG+ GE FV D + +IV E L +R+ ++ + + + Sbjct: 244 QRRGLGIGGEGEAWFVCGKDLEKNELIVCQGKNNEKLFSNRLIGSNLS----SISKKGLK 299 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 F C K R Q + V+ DDG V + ++K++ V GQA VFY + + Sbjct: 300 KEFDCTCKFRYRQKDINSHVKILDDGRVEITYDKTKA-VTPGQAAVFYDGEVCLGSCIID 358 Query: 381 GIISGSKR 388 + +G KR Sbjct: 359 EVYNGEKR 366 >gi|317014725|gb|ADU82161.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori Gambia94/24] Length = 342 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 128/370 (34%), Positives = 203/370 (54%), Gaps = 36/370 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78 M++ V +SGGVDSS A LK G++++G+ L+L+ S K D+Y +A++ Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + V D+++ F++AV F S+Y G+TP PC CN +KF L QLG Sbjct: 51 ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALQLGC 110 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + + R + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 111 EKIATGHYARVK-----EIDRVSYIQEAVDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165 Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++ LA +G + +SQ+ICFV++ Y D +K+ + + EG + +L G+I+G Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222 Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G + YTIG+R+G + EP FVV +D + +IVG +E L H + + + + D Sbjct: 223 THKGYMQYTIGKRKGFNIKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLMKD 282 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F+ + F+K R P FV D+ + V+F++ GVA GQA V Y D Sbjct: 283 --FKKG-----EYFIKARYRSVPAKAFVSLKDEVIEVEFKEPFYGVAKGQALVVYKDDI- 334 Query: 374 EARVLGGGII 383 +LGGG+I Sbjct: 335 ---LLGGGVI 341 >gi|299822830|ref|ZP_07054716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria grayi DSM 20601] gi|299816359|gb|EFI83597.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria grayi DSM 20601] Length = 370 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 135/383 (35%), Positives = 201/383 (52%), Gaps = 43/383 (11%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+ ++RVVV MSGGVDSSV A LLK+ GYDV+G+ ++ ++ + G C A +D D Sbjct: 2 KDNSNIRVVVGMSGGVDSSVTAYLLKQQGYDVVGIFMKNWDD---TDEFGVCTATEDYED 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 RV + I + +Y ++E+++ + V F + Y G TP P V CN+ +KF L Sbjct: 59 VIRVANQIGIPYYAVNFEKQYWDKVFTYFLAEYKLGRTPNPDVMCNKEIKFKAFLEHAES 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY R+ + DG+ + + R +D +DQ+YFL +Q+QL + FPLG M Sbjct: 119 LGADYVATGHYARTEIV---DGEVQ--LLRGVDNNKDQTYFLNQLSQEQLSKVMFPLGGM 173 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VRD+A++ GL A+K DS ICF+ + + + A G++ L G+ +G+ Sbjct: 174 EKSEVRDIAQKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLTGKRMGK 231 Query: 256 HNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H+G++ YTIGQR GLG+ GEP FV D ++ + V E + D Sbjct: 232 HDGLMYYTIGQRHGLGIGGDGEPWFVAGKDLENNVLFV--------------EQGFHHDS 277 Query: 315 LFEDAVVDG-------------FKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVA 360 L+ D ++ F C K R Q V V ++G V F++ + Sbjct: 278 LYSDMLIATDVSFTSNRPKEMVFHCTAKFRYRQVDSGVTVYLTENGTAKVVFDEPVRAIT 337 Query: 361 SGQACVFYTSDSNEARVLGGGII 383 GQA VFY D LGG I Sbjct: 338 PGQAVVFYDGDI----CLGGATI 356 >gi|208780006|ref|ZP_03247349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella novicida FTG] gi|208744010|gb|EDZ90311.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella novicida FTG] Length = 359 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 134/374 (35%), Positives = 208/374 (55%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ Sbjct: 2 ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F Y AG TP P + CN+ +KF LS LG Sbjct: 59 VCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R+R V +DG + + + +D +DQ+YFL+ Q+QL FP+G+++K Sbjct: 119 DYIATGHYARTR--VLEDGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ + + + A +G+I NG +G H+G Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 232 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINW 310 ++ YTIGQR+GLG+ + P F D +N+ + V + + + L+ E++W Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + G+ A D F+C K+R Q V+ N DG V V F++ + + GQ+ VFY Sbjct: 293 VA-GM---APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348 Query: 370 SDSNEARVLGGGII 383 D LGGG+I Sbjct: 349 DDV----CLGGGVI 358 >gi|296270802|ref|YP_003653434.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Thermobispora bispora DSM 43833] gi|296093589|gb|ADG89541.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Thermobispora bispora DSM 43833] Length = 362 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 143/362 (39%), Positives = 199/362 (54%), Gaps = 26/362 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDA 76 + +RV+ AMSGGVDS+V AA + +G++V+GV L L + + S R G+ CC +D DA Sbjct: 5 RKLRVLAAMSGGVDSAVAAARIAEEGHEVVGVHLALSPNPR-SHRVGARGCCTLEDARDA 63 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RR D I + YV+D ERF V+ F S YAAG TP PC+ CN +KFS +L L Sbjct: 64 RRAADVIGIPFYVWDMAERFHRDVVEDFVSEYAAGRTPNPCLRCNEKIKFSAVLDRALAL 123 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 G D +ATGH+ +RL G ++ R +D +DQSY L T++QL FPLG Sbjct: 124 GFDAVATGHH--ARLIDG-------VLRRSVDASKDQSYVLGVLTREQLKHAIFPLGGST 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIV-HLNGQIL 253 K VR A GL +ADK DS DICF+ G + F + +R+ EG IV L G++L Sbjct: 175 KAEVRAEAARRGLAVADKPDSHDICFIADGDTRAF-LAERLGTA---EGPIVDALTGEVL 230 Query: 254 GRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 G H G +TIGQR+GLG+ G P +V+ ++ S+ V VGPR L+V RI Sbjct: 231 GTHRGAYGFTIGQRKGLGLERPAPDGRPRYVLSIEPVSNTVKVGPRSRLQVTRIIGERPV 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 W G + E + C V++R+ + + +++D + GVA GQA V Y Sbjct: 291 WNGP-VAEP--YEPITCSVQLRAHGEVYGCRAWVEEGRLHIDLDTPAYGVAPGQAAVLYQ 347 Query: 370 SD 371 D Sbjct: 348 DD 349 >gi|312140513|ref|YP_004007849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmu [Rhodococcus equi 103S] gi|311889852|emb|CBH49169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU [Rhodococcus equi 103S] Length = 362 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 134/375 (35%), Positives = 192/375 (51%), Gaps = 37/375 (9%) Query: 31 VDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTINVSHY 88 +DS+V AA G+DV+GV L L ++ + R GS CC+ +D DA+R D + + Y Sbjct: 1 MDSAVAAARAVEAGHDVVGVHLAL-STAPGTLRTGSRGCCSKEDAGDAKRAADVLGIPFY 59 Query: 89 VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIR 148 V+D+ +RF+ VI F SYAAGETP PC+ CN +KF+ L LG D +ATGHY R Sbjct: 60 VWDFADRFKEDVIDDFVESYAAGETPNPCLRCNEKIKFAALADRAYALGFDAVATGHYAR 119 Query: 149 SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMG 208 +DG+ RR +D ++DQSY L T QL FP+GD KE +R+ A G Sbjct: 120 L-----EDGELRRA----VDADKDQSYVLAVLTADQLSRAMFPVGDTPKEQIREEAAARG 170 Query: 209 LDIADKSDSQDICFVQQG---KYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 L +A+K DS DICF+ G + I G ++ D G++L +H G+ +TIG Sbjct: 171 LAVANKPDSHDICFIPSGDTRAFLGARIGIRPGAVVDAD----TGEVLAQHEGVHGFTIG 226 Query: 266 QRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 QR+GLGV A G+P +V ++ + V VG L+V I W E + Sbjct: 227 QRKGLGVQGPAADGQPRYVTAIEPETGTVRVGSAARLDVWTITAERAIWTSGQAPEGPI- 285 Query: 322 DGFKCFVKIRSSQDPVPVFVQR----------NDDGVYVDFEKSEVGVASGQACVFYTSD 371 +C V++R+ + D G+ V + GVA GQA V Y D Sbjct: 286 ---ECIVQVRAHGGTARAVAEAVRGERSDGEGRDGGIVVQLSEPLTGVAKGQAVVLYRPD 342 Query: 372 SNEARVLGGGIISGS 386 + V+G G I+G+ Sbjct: 343 EDGDVVIGSGTIAGT 357 >gi|317013122|gb|ADU83730.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori Lithuania75] Length = 342 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 128/370 (34%), Positives = 203/370 (54%), Gaps = 36/370 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78 M++ V +SGGVDSS A LK G++++G+ L+L+ S K D+Y +A++ Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + V D+++ F++AV F ++Y G+TP PC CN +KF L +LG Sbjct: 51 ACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGKTPNPCALCNPLMKFGLALDHALKLGC 110 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + + + + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 111 EKIATGHYARVK-----EIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165 Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++ LA +G + +SQ+ICFV++ Y D +K+ + + EG + +L G+I+G Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222 Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G + YTIG+R+G V EP FVV +D + +IVG +E L H + + + + D Sbjct: 223 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLMKD 282 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F+D + F+K R P FV D + V+FE+ GVA GQA V Y D Sbjct: 283 --FKDG-----EYFIKARYRSVPAKAFVSLKDGMIEVEFEEPFYGVAKGQALVVYKDDI- 334 Query: 374 EARVLGGGII 383 +LGGG+I Sbjct: 335 ---LLGGGVI 341 >gi|219559055|ref|ZP_03538131.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium tuberculosis T17] Length = 396 Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 142/360 (39%), Positives = 194/360 (53%), Gaps = 26/360 (7%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84 MSGGVDSSV AA + G++V+GV + L + + R GS CC+ +D DARRV D + Sbjct: 1 MSGGVDSSVAAARMVDAGHEVVGVHMALSTA-PGTLRTGSRGCCSKEDAADARRVADVLG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV+D+ E+F+ VI F SSYA GETP PCV CN+ +KF+ L + LG D +ATG Sbjct: 60 IPFYVWDFAEKFKEDVINDFVSSYARGETPNPCVRCNQQIKFAALSARAVALGFDTVATG 119 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY R G R R R +D ++DQSY L T QQL FP+GD K +R A Sbjct: 120 HYARL------SGGRLR---RAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKRQIRAEA 170 Query: 205 REMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 GL +A+K DS DICF+ G K F + +RI G +V +G +L H+G+ + Sbjct: 171 ARRGLAVANKPDSHDICFIPSGNTKAF-LGERIG---VRRGVVVDADGVVLASHDGVHGF 226 Query: 263 TIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 TIGQRRGLG+A G P +V +D +++ V VG L+V + R + G Sbjct: 227 TIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTA-GAAPS 285 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 VD C V++R+ + V + D ++V GVA GQ V Y D VL Sbjct: 286 GPVD---CVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQTLVLYRPDPAGDEVL 342 >gi|194334691|ref|YP_002016551.1| tRNA-specific 2-thiouridylase MnmA [Prosthecochloris aestuarii DSM 271] gi|194312509|gb|ACF46904.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prosthecochloris aestuarii DSM 271] Length = 362 Score = 209 bits (533), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 130/369 (35%), Positives = 202/369 (54%), Gaps = 25/369 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ-LYNSRKASKRKGSCCAGQDVYDARRVCD 81 V+V +SGGVDS+V A LL GY V G+ ++ L +S +++ S D+ + R Sbjct: 10 VIVGLSGGVDSAVAACLLIEQGYSVTGLHIRTLDDSPDSAELVASTLVVSDLDEYRFPVF 69 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 ++N+S+ FR VI+ F Y AG+TP PC CN+ +K+ LL + GA+ + Sbjct: 70 SLNLSN-------SFREHVIMTFQKDYLAGKTPNPCTLCNKLIKWEGLLKGAQLCGAEYV 122 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +R+ D R + + +D ++DQSYFL+ ++ L FPLG+ K VR Sbjct: 123 ATGHY--ARIQHSDSSCR---LLKGVDNKKDQSYFLWMLGRKTLEKTLFPLGEYSKPEVR 177 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRHNG 258 LAR G+ A+K++SQ+ICFV Y +K G+ GDI+ G ++G H G Sbjct: 178 QLARRFGIRAAEKTESQEICFVGDNNYRQFLKSSIPGLEQSVQGGDIIDEEGSVIGHHTG 237 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 YTIGQR+GLG++ EPL+V +D +R+ VG ++ L R+ ++NW+G E Sbjct: 238 YPFYTIGQRKGLGISSSEPLYVTTIDPKRNRIHVGGKQKLACSRLKAGQLNWIGIAPPER 297 Query: 319 AVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + K +IR Q+ + + D + V F++ + V GQA VFY +E + Sbjct: 298 PL----KALGRIRYRDQESACTIIPLDGDRIEVLFDEPKNAVTPGQAIVFY----HEEEL 349 Query: 378 LGGGIISGS 386 LGGG+I+ + Sbjct: 350 LGGGVITAA 358 >gi|56460418|ref|YP_155699.1| tRNA-specific 2-thiouridylase MnmA [Idiomarina loihiensis L2TR] gi|73920125|sp|Q5QYZ7|MNMA_IDILO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|56179428|gb|AAV82150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Idiomarina loihiensis L2TR] Length = 371 Score = 209 bits (533), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 130/375 (34%), Positives = 201/375 (53%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A D+ DA +VC+ Sbjct: 7 KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDTDEY---CAASDDLADAEKVCE 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 T+ + + ++ + + V F Y AG TP P + CN+ +KF L + L AD Sbjct: 64 TLGIELHTINFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLEFAAEALDADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + DGK M R +D +DQSYFL+ + + + FP+G+++K V Sbjct: 124 IATGHYVRRQQ---RDGKWE--MLRGLDSNKDQSYFLYTLSHEHIAQTLFPVGELEKPEV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL ADK DS ICF+ + K+ D +++ A G I + G+ LG H G++ Sbjct: 179 RRIAEEQGLVTADKKDSTGICFIGERKFKDFLQQYLP--AKPGPIESVEGEALGEHEGLM 236 Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR-----EINW 310 +T+GQR+GL + GEP +VV DK+ R ++ + + R+Y + +++W Sbjct: 237 YHTLGQRKGLHIGGMADNSGEPWYVV--DKDVERNVLIVAQGKKHPRLYSQGLIAGQLHW 294 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYT 369 + +A + F C VK R Q +P V +G + V F++ V GQ+ VFY+ Sbjct: 295 VS----RNAPPEAFDCTVKTRYRQQDIPCRVTPLSNGDFQVQFKEPVAAVTPGQSAVFYS 350 Query: 370 SDSNEARVLGGGIIS 384 D LGGGII Sbjct: 351 DDV----CLGGGIIE 361 >gi|260889979|ref|ZP_05901242.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Leptotrichia hofstadii F0254] gi|260860585|gb|EEX75085.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Leptotrichia hofstadii F0254] Length = 371 Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 128/382 (33%), Positives = 200/382 (52%), Gaps = 31/382 (8%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72 +++K + +VVV MSGG+DSSV A LLK+ GY+VIGVTL+ + +CC+ D Sbjct: 6 EMNKKLDEKKVVVGMSGGIDSSVAALLLKQQGYEVIGVTLKHLPDELSENPGKTCCSLDD 65 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 + DAR C T+ + HYV + E F+ V+ F Y AG+TP PCV C+ VK LL Sbjct: 66 INDARYTCYTLGIPHYVLNVVEEFKKDVMEYFIKMYNAGKTPSPCVICDEKVKIKKLLEF 125 Query: 133 TRQLGADVLATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 ++G ++TGHY + + + + D R +DQ+Y L+ + + Sbjct: 126 ADKMGIKYISTGHYSKVSENNMLLWDKNNR-----------KDQTYMLYRLDKDVVERFL 174 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 FPL + +K VR++AR+ G+ +K DSQ ICF G Y +K++ +G+ V N Sbjct: 175 FPLAEYEKSEVREIARQNGVHTHNKPDSQGICFAPNG-YIPFLKKVLGNDVKKGNFVDKN 233 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 G+I+G H G YT+GQRRGLG+ +G+P FV+ L ++ V+VG E L ++EI Sbjct: 234 GKIIGEHIGYQFYTVGQRRGLGLNLGKPFFVLELRPETNEVVVGDFEEL-----LIKEIE 288 Query: 310 WLGDGLFED-AVVDGFKCFVKIRSSQDPVPVFV------QRNDDGVYVDFEKSEVGVASG 362 + D + G K + R S V + + N++ + +F++ + G Sbjct: 289 VINRKFHYDLKEIIGKKLTARPRFSSKGVVGKLKLLKSEKSNENRIIFEFDEKTHENSEG 348 Query: 363 QACVFYTSDSNEARVLGGGIIS 384 Q VFY + ++GGG I Sbjct: 349 QHIVFYLDNE----IVGGGEIK 366 >gi|253989217|ref|YP_003040573.1| tRNA -specific 2-thiouridylase MnmA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780667|emb|CAQ83829.1| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Photorhabdus asymbiotica] Length = 367 Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 127/373 (34%), Positives = 200/373 (53%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNW---EEDDNEEYCSAATDLADAQSVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 +++ + ++ + + V F S Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLDIELHTVNFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + D + + R +D +DQSYFL+ QQ+ FP+G+++K V Sbjct: 125 IATGHYVRRK-----DINGKSQLLRGLDNNKDQSYFLYTLNHQQIAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ D + R A G IV ++G+ LG H G++ Sbjct: 180 RRIAEKIGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AKPGPIVTVDGKNLGEHQGLM 237 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLG 312 +T+GQR+GLG+ EP +V+ D ++ +IV SL + ++++W+ Sbjct: 238 YHTLGQRKGLGIGGTKDGNEEPWYVIDKDIQNNILIVAQGHEHPSLMSTGLIAQQLHWVD 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 + + + C VK R Q +P V N+D + V F V GQ+ VFY + Sbjct: 298 ----KQPLTEEIHCVVKTRYRQQDIPCTVTPINEDKIKVRFANPVAAVTPGQSAVFYQGE 353 Query: 372 SNEARVLGGGIIS 384 LGGG+I Sbjct: 354 I----CLGGGVIE 362 >gi|57169043|ref|ZP_00368171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter coli RM2228] gi|57019588|gb|EAL56278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter coli RM2228] Length = 338 Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 126/367 (34%), Positives = 201/367 (54%), Gaps = 34/367 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++VAMSGGVDS+V A LK G++VIG ++L+ + +++ +V Sbjct: 1 MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVA 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + +++ D +E F+N V +PF +Y G+TP PC CNR +K LL + LG + Sbjct: 53 NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R ++ +D +DQSYFL + ++ L L FPLG+MKKE V Sbjct: 113 LATGHYARL---------ENNLIRTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163 Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 + A E+ A + +S +ICFV+ Y V+ + + G+++ +G+++G+H G Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQF-MDTKIPGEVLDSSGKVVGKHEG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V +P FV+ ++ +++IVG +E L+++ L+ IN LF Sbjct: 222 YMHYTIGKRRGFEVRGAHKPHFVLKINPKQNQIIVGTKEELKINEFKLKNIN-----LFI 276 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 DA C VKIR P V +DD + ++S G+ASGQ VFY D + Sbjct: 277 DA--KELDCEVKIRYRSKSTPCKVIISDDKSASISLKESVYGLASGQMAVFYDGD----K 330 Query: 377 VLGGGII 383 V+ G I Sbjct: 331 VIASGFI 337 >gi|297588098|ref|ZP_06946742.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Finegoldia magna ATCC 53516] gi|297574787|gb|EFH93507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Finegoldia magna ATCC 53516] Length = 375 Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 130/366 (35%), Positives = 207/366 (56%), Gaps = 24/366 (6%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 + N++D K ++VVV +SGGVDSSV A LLK+ GYDV+G+ ++ ++ + G C Sbjct: 6 KENTMDNSK----IKVVVGISGGVDSSVAALLLKQQGYDVVGIFMKNWDE---TDDDGVC 58 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 A +D DA V + I + +Y ++E+ + + V F Y G TP P + CN+ +KF Sbjct: 59 TAEEDYKDAVTVANEIGIDYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFK 118 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 L +LGAD +ATGHY +R+ GDDG + + R +D +DQ+YFL TQ Q+ + Sbjct: 119 AFLDFAMKLGADYVATGHY--ARIERGDDGVK---LLRGLDNNKDQTYFLSQLTQDQIKN 173 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 + FP+G+++K+ VR++A++ L ADK DS ICF+ + + + + A +G+IV Sbjct: 174 VMFPVGELQKKEVREIAKKYNLATADKKDSTGICFIGERNFNEFLSHYLP--AKQGNIVD 231 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRES---LEVHRI 303 ++G I+G+HNG++ +TIGQRRGLG+ G FV + + +IV E L +++ Sbjct: 232 VDGNIMGKHNGLMYHTIGQRRGLGIGGDGAAWFVCGKNLEKNELIVCQGEDNPLLYSNKL 291 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASG 362 Y + + L + F C K R Q + V+ DD V V ++ ++ V G Sbjct: 292 YASQFETSLNHLDRNE----FDCTAKFRYRQKDIKAHVKFIDDTHVEVTYDDTK-AVTPG 346 Query: 363 QACVFY 368 QA VFY Sbjct: 347 QAAVFY 352 >gi|303234693|ref|ZP_07321321.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Finegoldia magna BVS033A4] gi|302494176|gb|EFL53954.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Finegoldia magna BVS033A4] Length = 366 Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 127/353 (35%), Positives = 203/353 (57%), Gaps = 20/353 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 ++VVV +SGGVDSSV A LLK+ GYDV+G+ ++ ++ + G C A +D DA V Sbjct: 6 IKVVVGISGGVDSSVAALLLKQQGYDVVGIFMKNWDE---TDDDGVCTAEEDYKDAVAVA 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + I + +Y ++E+ + + V F Y G TP P + CN+ +KF L +LGAD Sbjct: 63 NEIGIDYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAMKLGADY 122 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY +R+ GDDG + + R +D +DQ+YFL TQ Q+ ++ FP+G+++K+ V Sbjct: 123 VATGHY--ARIERGDDGVK---LLRGLDNNKDQTYFLSQLTQDQIKNVMFPVGELQKKEV 177 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A++ L ADK DS ICF+ + + + + A +G+IV ++G I+G+HNG++ Sbjct: 178 REIAKKYNLATADKKDSTGICFIGERNFNEFLSHYLP--AKQGNIVDVDGNIMGKHNGLM 235 Query: 261 NYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLGDGLF 316 +TIGQRRGLG+ G FV + ++ +IV E L +++Y + + L Sbjct: 236 YHTIGQRRGLGIGGDGAAWFVCGKNLATNELIVCQGEDNPLLYSNKLYASQFETSLNHLD 295 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 + F C K R Q + V+ DD V V+++ ++ V GQA VFY Sbjct: 296 RNE----FDCTAKFRYRQKDIRAHVKFIDDTHVEVNYDDTKA-VTPGQAAVFY 343 >gi|26990719|ref|NP_746144.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas putida KT2440] gi|37999625|sp|Q88FR9|MNMA_PSEPK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|24985713|gb|AAN69608.1|AE016594_5 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas putida KT2440] Length = 374 Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 131/380 (34%), Positives = 204/380 (53%), Gaps = 26/380 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+P RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ D Sbjct: 7 KDPAKTRVIVGMSGGVDSSVSALLLIEQGYQVEGLFMKNWEEDDGTE---YCTAREDLAD 63 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ VCD I + + ++ + + V F Y AG TP P + CNR +KF L Sbjct: 64 AQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALS 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD++ATGHY+R R D G ++ + +D +DQSYFL A Q++ FP+G++ Sbjct: 124 LGADLIATGHYVRRR----DTGALTELL-KGLDPNKDQSYFLHAVGGQEIARTLFPVGEL 178 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + GL A K DS ICF+ + ++ D +K+ A GDI G+++GR Sbjct: 179 EKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGDIETTEGEVIGR 236 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 H+G++ +TIGQR+GLG+ A EP +V++ D + ++VG + E ++ R + Sbjct: 237 HHGLMYHTIGQRQGLGIGGLKDASDEPWYVLHKDLARNVLVVG--QGNEHPWLFSRAL-- 292 Query: 311 LGDGLFEDAVVD---GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 L +F VD + K+R Q ++R G F++ + V GQ+ VF Sbjct: 293 LASEIFWVNPVDLGSPRQLTAKVRYRQSDQRCTLERTASGYRAVFDEPQRAVTPGQSVVF 352 Query: 368 YTSDSNEARVLGGGIISGSK 387 Y + LGGG+I ++ Sbjct: 353 YDGEV----CLGGGVIEAAE 368 >gi|119944723|ref|YP_942403.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Psychromonas ingrahamii 37] gi|166235075|sp|A1STI9|MNMA_PSYIN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|119863327|gb|ABM02804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Psychromonas ingrahamii 37] Length = 367 Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 127/374 (33%), Positives = 206/374 (55%), Gaps = 28/374 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 ++V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A QD+ DA+ VC Sbjct: 7 VKVIVGMSGGVDSSVSAYLLQQQGYLVEGLFMKNWEEDDTDQY---CAAAQDLEDAQSVC 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 DKLGIPLHTINFAAEYWDNVFEHFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAEDLGAD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R R DG + + R +D +DQSYFL+A ++Q+ FP+G+++K Sbjct: 124 YIATGHYVRRREV---DGHVQ--LLRGLDNNKDQSYFLYAIGEKQIAKSLFPVGELEKPE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A + L +K DS ICF+ + K+ D ++ A GDIV G+++G+H G+ Sbjct: 179 VRRIAEQQDLITHNKKDSTGICFIGERKFTDFLQEYLP--AQPGDIVTPTGEVIGQHQGL 236 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +T+GQR+GLG+ + P +VV D +++R++V +L + + ++ +W+ Sbjct: 237 MYHTLGQRKGLGIGGLQNSNENPWYVVGKDMDNNRLLVAQGADHPALFSYGLIAKQCDWV 296 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTS 370 F+C VK R Q +P V +DD + V F+ ++ V GQ+ VFY Sbjct: 297 D----RTPKKSTFRCTVKTRYRQQDIPCTVTPLDDDTLKVIFDTAQAAVTPGQSAVFY-- 350 Query: 371 DSNEARVLGGGIIS 384 N+ LGG II Sbjct: 351 --NDEVCLGGAIIE 362 >gi|317178374|dbj|BAJ56162.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori F30] Length = 342 Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 127/370 (34%), Positives = 201/370 (54%), Gaps = 36/370 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78 M++ V +SGGVDSS A LK G++++G+ L+L+ S K D+Y + ++ Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNTQK 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG Sbjct: 51 ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDYALKLGC 110 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + + + + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 111 EKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165 Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++ LA +G + +SQ+ICFV++ Y D +K+ + + EG + +L G+I+G Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222 Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G + YTIG+R+G V EP FVV +D + +IVG +E L H + + + D Sbjct: 223 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKD 282 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F+ + F+K R P FV D+ + V+FE+ GVA GQA V Y D Sbjct: 283 --FKSG-----EYFIKARYRSVPAKAFVSLRDEAIEVEFEEPFYGVAKGQALVVYKDDI- 334 Query: 374 EARVLGGGII 383 +LGGG+I Sbjct: 335 ---LLGGGVI 341 >gi|257792258|ref|YP_003182864.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Eggerthella lenta DSM 2243] gi|257476155|gb|ACV56475.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Eggerthella lenta DSM 2243] Length = 352 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 138/364 (37%), Positives = 196/364 (53%), Gaps = 25/364 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+ + MSGGVDS+V AALL R GY+V+GVT + ++ + DA VC Sbjct: 6 RIALGMSGGVDSAVSAALLMRAGYEVVGVTCRFRDNAATERAA---------ADAAAVCS 56 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H F V+ PF SSYAAG TP PCV CN K L+ V +LG D + Sbjct: 57 QLGIRHEAPGCVGEFERCVVEPFVSSYAAGLTPSPCVGCNARCKMPALVRVAGELGCDRI 116 Query: 142 ATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY R +RL D G R ++ R +D +DQSY L +Q+QL L PLG M K V Sbjct: 117 ATGHYARIARL--SDSG--RFVVKRALDARKDQSYMLSLLSQEQLARLVLPLGAMTKAEV 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL +A+K++SQD CF+ +G Y ++ A GDIV G +LG H G+ Sbjct: 173 RVIAADLGLVVAEKAESQDNCFI-EGDYRPFLRARGVEDA-PGDIVDRMGNVLGCHEGLA 230 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 NYT+GQR+G+GVA EP +VV + ++VG + + + + +NW FE ++ Sbjct: 231 NYTVGQRKGIGVAGPEPYYVVEKRVETRELVVGFADETLIGSVVVGGMNWQA---FE-SL 286 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + + VK+R P ++ DD V + + A GQ V Y D+ VLG Sbjct: 287 GESYGAMVKLRYRSRPCACIIEPEDDQRVSLALRSPQPTTAPGQYAVLYDGDT----VLG 342 Query: 380 GGII 383 GG+I Sbjct: 343 GGMI 346 >gi|148547054|ref|YP_001267156.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas putida F1] gi|166235073|sp|A5W1G2|MNMA_PSEP1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|148511112|gb|ABQ77972.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas putida F1] Length = 374 Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 131/380 (34%), Positives = 204/380 (53%), Gaps = 26/380 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+P RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ D Sbjct: 7 KDPAKTRVIVGMSGGVDSSVSALLLIEQGYQVEGLFMKNWEEDDGTE---YCTAREDLAD 63 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ VCD I + + ++ + + V F Y AG TP P + CNR +KF L Sbjct: 64 AQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALS 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD++ATGHY+R R D G ++ + +D +DQSYFL A Q++ FP+G++ Sbjct: 124 LGADLIATGHYVRRR----DTGALTELL-KGLDPNKDQSYFLHAVGGQEIARTLFPVGEL 178 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + GL A K DS ICF+ + ++ D +K+ A GDI G+++GR Sbjct: 179 EKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGDIETTEGEVIGR 236 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 H+G++ +TIGQR+GLG+ A EP +V++ D + ++VG + E ++ R + Sbjct: 237 HHGLMYHTIGQRQGLGIGGLKDASDEPWYVLHKDLARNVLVVG--QGNEHPWLFSRAL-- 292 Query: 311 LGDGLFEDAVVD---GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 L +F VD + K+R Q ++R G F++ + V GQ+ VF Sbjct: 293 LASDIFWVNPVDLGSPRQLTAKVRYRQSDQRCTLERTASGYRAVFDEPQRAVTPGQSVVF 352 Query: 368 YTSDSNEARVLGGGIISGSK 387 Y + LGGG+I ++ Sbjct: 353 YDGEV----CLGGGVIEAAE 368 >gi|257125929|ref|YP_003164043.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Leptotrichia buccalis C-1013-b] gi|257049868|gb|ACV39052.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Leptotrichia buccalis C-1013-b] Length = 364 Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 132/370 (35%), Positives = 195/370 (52%), Gaps = 24/370 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV+ MSGGVDSSV A LLK GYDVIGV ++ + + + G C A +D D V + Sbjct: 6 KVVLGMSGGVDSSVAAILLKEQGYDVIGVFMKNWEEKDEN---GVCMAEEDYKDVIAVAE 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + +Y ++ + + + V F Y G TP P V CN+ +KF L ++GAD + Sbjct: 63 QLGIPYYSVNFVKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFRAFLDYAMKIGADYV 122 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R ++ DG+ + M R +D +DQ+YFL Q+QL + FPLG+ K +R Sbjct: 123 ATGHYARI-IHEEKDGEMKSTMLRGIDDNKDQTYFLCQLNQEQLEKVLFPLGEYTKPKIR 181 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A + L A K DS ICF+ + + + + A G+IV+ G++LG HNG++ Sbjct: 182 EIAEKYNLATAKKKDSTGICFIGERDFNKFLSQYLP--AKGGNIVNTQGKVLGHHNGLMY 239 Query: 262 YTIGQRRGLGV-----AMGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 YTIGQR+G+G+ GEP FVV L+KN V G L + + N++ + Sbjct: 240 YTIGQRKGIGIGNTKEGTGEPWFVVDKDLEKNELIVTQGDNSVLYSKGLIATDFNFINEV 299 Query: 315 LFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F +C VK R Q D V + N++ V F + + V GQ V Y + Sbjct: 300 QFP------LECTVKFRYRQKDTKAVISKLNENEYEVIFNEPQKAVTLGQIVVAYDGEV- 352 Query: 374 EARVLGGGII 383 LGGGII Sbjct: 353 ---CLGGGII 359 >gi|149194412|ref|ZP_01871509.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caminibacter mediatlanticus TB-2] gi|149135587|gb|EDM24066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caminibacter mediatlanticus TB-2] Length = 339 Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 131/371 (35%), Positives = 205/371 (55%), Gaps = 36/371 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MRV+V +SGGVDS+V LLK+ GY+VIG+ L++++ S +++ ++ Sbjct: 1 MRVLVGVSGGVDSAVTTYLLKKAGYEVIGIYLKMHSGVNHS---------ENLKKIEKLS 51 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 I S+ V D EE FR V F SY G TP PC CN+ +KF ++ + + Sbjct: 52 KKIGFSYVVEDVEEEFRKEVYEYFIKSYEEGSTPNPCAMCNKQIKFGIFMNFLEKYNCEK 111 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY+R +DGK + D +DQSYFLF ++ L L FPLG+ K + Sbjct: 112 AATGHYVR------NDGK---FLYEAKDKNKDQSYFLFGIKKEVLPKLIFPLGEYTKNEI 162 Query: 201 RDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 + +A+E+GL + A + +SQDICF++ Y DV+K + +G +V+ GQ +G H G Sbjct: 163 KLIAKEIGLEEFATQKESQDICFIENS-YIDVLK-FHFNPEKKGKVVNKKGQKIGIHKGY 220 Query: 260 INYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN-WLGDGLFE 317 YTIGQR+G + +P +V+ +D ++ +IVG ++ LE ++L+ +N ++ D +FE Sbjct: 221 AFYTIGQRKGFSLFKSSKPHYVIGIDAKTNTIIVGDKKDLEKKLVFLKGVNLFIDDKIFE 280 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 C K+R + V+ + V F+++ GVA GQACVFY + + Sbjct: 281 --------CEAKVRYRAPKLKAVVKMESKTKAVVKFKEAATGVAKGQACVFYEGE----K 328 Query: 377 VLGGGIISGSK 387 +LGGG I G+K Sbjct: 329 LLGGGWIRGAK 339 >gi|298487541|ref|ZP_07005583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157925|gb|EFH99003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 376 Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 128/376 (34%), Positives = 198/376 (52%), Gaps = 26/376 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N + RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA Sbjct: 8 NSEMKRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADA 64 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + VCD I + + ++ + + V F Y AG TP P + CNR +KF L L Sbjct: 65 QAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALML 124 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++ Sbjct: 125 GADLIATGHYVRRR-----DTDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELE 179 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH Sbjct: 180 KPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRH 237 Query: 257 NGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 +G++ +TIGQR+GLG+ A +P +V+ D +++ +IVG L + EI Sbjct: 238 SGLMYHTIGQRQGLGIGGLKDASDDPWYVLIKDLDNNELIVGQGNDHPWLFSRALVSTEI 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + K K+R Q P +++ DG F+ + V GQ+ VFY Sbjct: 298 YWVN----PIDLSSPRKLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFY 353 Query: 369 TSDSNEARVLGGGIIS 384 + LGGG+I Sbjct: 354 DGEI----CLGGGVIE 365 >gi|153951834|ref|YP_001397317.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. doylei 269.97] gi|166234847|sp|A7H1D7|MNMA_CAMJD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|152939280|gb|ABS44021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. doylei 269.97] Length = 338 Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 125/368 (33%), Positives = 197/368 (53%), Gaps = 34/368 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++VAMSGGVDS+V A LK G++VIG ++L+ + +++ +V Sbjct: 1 MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVA 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + +++ D +E F+N V +PF +Y G+TP PC CNR +K LL + LG + Sbjct: 53 NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKNLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R ++ +D +DQSYFL + ++ L L FPLG+MKKE V Sbjct: 113 LATGHYARL---------ENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163 Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 + A E+ A + +S +ICFV+ Y V+ + + G+++ +G+++G+H G Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQF-MDTKIPGEVLDSSGKVVGKHEG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V EP FV+ ++ +++IVG +E L++ L+ IN LF Sbjct: 222 YMHYTIGKRRGFEVRGTHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNIN-----LFI 276 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 DA C VKIR P V+ D + + G+ASGQ VFY D + Sbjct: 277 DA--KELDCEVKIRYRSKSTPCKVEIYEDKSAKITLKDPVYGLASGQMAVFYNHD----K 330 Query: 377 VLGGGIIS 384 V+ G I Sbjct: 331 VIASGFIE 338 >gi|113953824|ref|YP_729973.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. CC9311] gi|123327918|sp|Q0IC49|MNMA_SYNS3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|113881175|gb|ABI46133.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. CC9311] Length = 391 Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 138/399 (34%), Positives = 208/399 (52%), Gaps = 34/399 (8%) Query: 1 MVVSEATRLNSLDLDK---NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS 57 M S AT+ + L++ P + RV V +SGGVDSS+ AAL+ G++V G+TL L + Sbjct: 7 MTTSTATQAGAEALERLRQWPGEHRVAVGLSGGVDSSLTAALMVEAGWEVEGLTLWLMSG 66 Query: 58 RKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117 KG+CCA + + DA +C + V H+V D + F ++ Y AG TPLPC Sbjct: 67 ------KGACCA-EGLVDAAGICQQLGVPHHVVDSRDTFVREIVQGLVDGYRAGITPLPC 119 Query: 118 VDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176 CNR+VKF +L+ Q +ATGHY R RL D R + R +D +DQSYF Sbjct: 120 SKCNRSVKFGPMLAWAEQERNLPRIATGHYARIRL---DREDGRWKLLRGLDRRKDQSYF 176 Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN 236 L+ Q+ L + FPLG++ K R A GL ADK +SQD+C + + ++ Sbjct: 177 LYDLPQEVLARVVFPLGELTKADTRLEAGRHGLRTADKPESQDLCLADH--HGSMRAFLD 234 Query: 237 AGIAL-EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR 295 A I +G+IV +G ++G+H+GI ++TIGQR+GLG+A EPL VV LD ++V+V R Sbjct: 235 AYIPPRDGEIVLQDGTVVGQHDGIEHFTIGQRKGLGIAWSEPLHVVKLDAAMNQVVVATR 294 Query: 296 ESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-----QRNDDG--- 347 + +NW+ + + + V++R +PV + ND Sbjct: 295 AEAGRTGCEVGAMNWV--SIAPPPLDSPMEVEVQVRYRSEPVRAHLICIEATANDRAKER 352 Query: 348 ---VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 + F++ + + GQ V Y + VLGGG+I Sbjct: 353 PHRCKLTFQEPQFSITPGQGAVLYDGEV----VLGGGLI 387 >gi|254372089|ref|ZP_04987582.1| hypothetical protein FTCG_01230 [Francisella tularensis subsp. novicida GA99-3549] gi|151569820|gb|EDN35474.1| hypothetical protein FTCG_01230 [Francisella novicida GA99-3549] Length = 359 Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 133/374 (35%), Positives = 208/374 (55%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ Sbjct: 2 ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F Y AG TP P + CN+ +KF LS LG Sbjct: 59 VCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R+R V +DG + + + +D +DQ+YFL+ Q+QL FP+G+++K Sbjct: 119 NYIATGHYARTR--VLEDGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ + + + A +G+I NG +G H+G Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKFLP--AQKGEIHDENGIKIGMHDG 232 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINW 310 ++ YTIGQR+GLG+ + P F D +N+ + V + + + L+ E++W Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + G+ A D F+C K+R Q V+ N DG V V F++ + + GQ+ VFY Sbjct: 293 VA-GM---APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348 Query: 370 SDSNEARVLGGGII 383 D LGGG+I Sbjct: 349 DDV----CLGGGVI 358 >gi|261838653|gb|ACX98419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori 51] Length = 342 Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 127/370 (34%), Positives = 202/370 (54%), Gaps = 36/370 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78 M++ V +SGGVDSS A LK G++++G+ L+L+ S K D+Y +A++ Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + V D+++ F++ V F S+Y G+TP PC CN +KF L +LG Sbjct: 51 ACEFLGIPLEVLDFQKDFKSTVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + + + + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 111 EKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165 Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++ LA +G + +SQ+ICFV++ Y D +K+ + + EG + +L G+I+G Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222 Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G + YTIG+R+G V EP FVV +D + +IVG +E L H + + + D Sbjct: 223 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKD 282 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F++ + F+K R P FV D+ + V+FE+ GVA GQA V Y D Sbjct: 283 --FKNG-----EYFIKARYRSVPTKAFVSLRDEAIEVEFEEPFYGVAKGQALVVYKDDI- 334 Query: 374 EARVLGGGII 383 +LGGG+I Sbjct: 335 ---LLGGGVI 341 >gi|89255515|ref|YP_512876.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp. holarctica LVS] gi|156501449|ref|YP_001427514.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp. holarctica FTNF002-00] gi|290954256|ref|ZP_06558877.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp. holarctica URFT1] gi|295312320|ref|ZP_06803107.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp. holarctica URFT1] gi|122501358|sp|Q2A5X5|MNMA_FRATH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|166234852|sp|A7N9A5|MNMA_FRATF RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205821924|sp|Q0BP64|MNMA_FRATO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|89143346|emb|CAJ78513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. holarctica LVS] gi|156252052|gb|ABU60558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. holarctica FTNF002-00] Length = 359 Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust. Identities = 133/374 (35%), Positives = 207/374 (55%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ Sbjct: 2 ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F Y AG TP P + CN+ +KF LS LG Sbjct: 59 VCDSIGIPFKKINFTAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY ++RL DG + + + +D +DQ+YFL+ Q+QL FP+G+++K Sbjct: 119 DYIATGHYAQTRLAA--DGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ + + + A +G+I NG +G H+G Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 232 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINW 310 ++ YTIGQR+GLG+ + P F D +N+ + V + + + L+ E++W Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + G+ A D F+C K+R Q V+ N DG V V F++ + + GQ+ VFY Sbjct: 293 VA-GM---APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348 Query: 370 SDSNEARVLGGGII 383 D LGGG+I Sbjct: 349 DDV----CLGGGVI 358 >gi|134302735|ref|YP_001122703.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp. tularensis WY96-3418] gi|166234854|sp|A4J081|MNMA_FRATW RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|134050512|gb|ABO47583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. tularensis WY96-3418] Length = 359 Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 133/374 (35%), Positives = 207/374 (55%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ Sbjct: 2 ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F Y AG TP P + CN+ +KF LS LG Sbjct: 59 VCDSIGIPFKKINFAAEYWDNVFEHFLIKYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY ++RL DG + + + +D +DQ+YFL+ Q+QL FP+G+++K Sbjct: 119 DYIATGHYAQTRLAA--DGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ + + + A +G+I NG +G H+G Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 232 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINW 310 ++ YTIGQR+GLG+ + P F D +N+ + V + + + L+ E++W Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + G+ A D F+C K+R Q V+ N DG V V F++ + + GQ+ VFY Sbjct: 293 VA-GM---APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348 Query: 370 SDSNEARVLGGGII 383 D LGGG+I Sbjct: 349 DDV----CLGGGVI 358 >gi|237809068|ref|YP_002893508.1| tRNA-specific 2-thiouridylase MnmA [Tolumonas auensis DSM 9187] gi|259495840|sp|C4L952|MNMA_TOLAT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|237501329|gb|ACQ93922.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Tolumonas auensis DSM 9187] Length = 369 Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 126/379 (33%), Positives = 205/379 (54%), Gaps = 32/379 (8%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N ++V+V MSGGVDSSV A LL++ GY V G+ ++ + + + C A D+ DA Sbjct: 3 NNSQIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDSDEY---CSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 60 QAVCDKLGIKLHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R DD + R +D +DQSYFL+ + +Q+ FP+GD+ Sbjct: 120 LGADYIATGHYVRR-----DDSTGHPRLLRGLDNNKDQSYFLYTLSSEQIAQSLFPVGDL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++GL A K DS ICF+ + K+ + + R A G I ++G+++G Sbjct: 175 EKPQVRAIAEQLGLATAKKKDSTGICFIGERKFTEFLGRYLP--AQPGVIETVDGKVIGE 232 Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRESLEVHRIY-----L 305 H G++ +T+GQR+GLG+ P +VV DK+ +R ++ + + R++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGLKDGDENPWYVV--DKDVARNVLIVAQGHDHPRLFSDGLIA 290 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQA 364 ++++W+ + + F C VK R Q +P V+ +DD + V F + V GQ+ Sbjct: 291 KQLDWVDRQVRREP----FDCVVKTRYRQQDIPCHVEPLDDDTIKVTFASPQAAVTPGQS 346 Query: 365 CVFYTSDSNEARVLGGGII 383 VFY + LGGGII Sbjct: 347 AVFYLGE----ECLGGGII 361 >gi|325963946|ref|YP_004241852.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arthrobacter phenanthrenivorans Sphe3] gi|323470033|gb|ADX73718.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arthrobacter phenanthrenivorans Sphe3] Length = 369 Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 137/374 (36%), Positives = 189/374 (50%), Gaps = 29/374 (7%) Query: 31 VDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTINVSHY 88 +DS+V AA G+DV+GV L L + + R GS CC +D DA R CD + + +Y Sbjct: 1 MDSAVAAARAVEAGHDVVGVHLAL-SRMPGTLRTGSRGCCTIEDSRDAWRACDVLGIPYY 59 Query: 89 VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIR 148 V+D+ ERF+ V+ F YAAG TP PC+ CN +KF+ LL LG D + TGHY + Sbjct: 60 VWDFSERFKEDVVQDFIDEYAAGRTPNPCMRCNERIKFAALLEKAIALGFDAVCTGHYAK 119 Query: 149 SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDLAREM 207 V +D R + R D +DQSY L T +QL FPL D K VR A Sbjct: 120 ----VIEDADGNRELHRAADWAKDQSYVLGVLTHEQLKHSMFPLADTPSKAEVRAEAERR 175 Query: 208 GLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNGIINYTIGQ 266 GL +A+K DS DICF+ G D + I + GDIV G +G H G +T+GQ Sbjct: 176 GLSVANKPDSHDICFIPDG---DTAGWLAEKIEMTTGDIVDETGTKVGEHPGANAFTVGQ 232 Query: 267 RRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 RRGL + A G+P FV+ + ++V+VGP L + I +++W G + E Sbjct: 233 RRGLKLGTPAADGKPRFVLEIRPKENKVVVGPEALLAIDEIRGIKVSWAGLPIAEVGTGA 292 Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV---------GVASGQACVFYTSDSN 373 F C ++R+ DPVP + G D S++ GVA GQ V Y Sbjct: 293 EFDCHAQVRAHGDPVPATARMEPAGAGEDPAGSQLVVRLTTPLRGVAPGQTVVLYQG--- 349 Query: 374 EARVLGGGIISGSK 387 +RVLG I ++ Sbjct: 350 -SRVLGQATIDAAR 362 >gi|187930950|ref|YP_001890934.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp. mediasiatica FSC147] gi|224457896|ref|ZP_03666369.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp. tularensis MA00-2987] gi|254371318|ref|ZP_04987320.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|71658014|sp|Q5NEF9|MNMA_FRATT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205816649|sp|B2SEJ7|MNMA_FRATM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205822328|sp|Q14FW2|MNMA_FRAT1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|151569558|gb|EDN35212.1| hypothetical protein FTBG_01100 [Francisella tularensis subsp. tularensis FSC033] gi|187711859|gb|ACD30156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. mediasiatica FSC147] Length = 359 Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 133/374 (35%), Positives = 207/374 (55%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ Sbjct: 2 ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F Y AG TP P + CN+ +KF LS LG Sbjct: 59 VCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY ++RL DG + + + +D +DQ+YFL+ Q+QL FP+G+++K Sbjct: 119 DYIATGHYAQTRLAA--DGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ + + + A +G+I NG +G H+G Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 232 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINW 310 ++ YTIGQR+GLG+ + P F D +N+ + V + + + L+ E++W Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + G+ A D F+C K+R Q V+ N DG V V F++ + + GQ+ VFY Sbjct: 293 VA-GM---APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348 Query: 370 SDSNEARVLGGGII 383 D LGGG+I Sbjct: 349 DDV----CLGGGVI 358 >gi|108563707|ref|YP_628023.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori HPAG1] gi|107837480|gb|ABF85349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori HPAG1] Length = 353 Score = 209 bits (531), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 127/370 (34%), Positives = 203/370 (54%), Gaps = 36/370 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78 M++ V +SGGVDSS A LK G++++G+ L+L+ S K D+Y +A++ Sbjct: 12 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG Sbjct: 62 ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + + + + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 122 EKIATGHYARVK-----EIDKVSYIQEAVDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 176 Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++ LA +G + +SQ+ICFV++ Y D +K+ + + EG + +L G+++G Sbjct: 177 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEVIG 233 Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G + YTIG+R+G + EP FVV +D + +IVG +E L H + + + D Sbjct: 234 THKGYMQYTIGKRKGFNIKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKD 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F+D + F+K R P FV D+ + V+FE+ GVA GQA V Y D Sbjct: 294 --FKDG-----EYFIKARYRSVPAKAFVSLRDEVIEVEFEEPFYGVAKGQALVVYKDDI- 345 Query: 374 EARVLGGGII 383 +LGGG+I Sbjct: 346 ---LLGGGVI 352 >gi|257485430|ref|ZP_05639471.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330987933|gb|EGH86036.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. lachrymans str. M301315] Length = 366 Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 196/371 (52%), Gaps = 26/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 3 RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F Y AG TP P + CNR +KF L LGAD++ Sbjct: 60 KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K VR Sbjct: 120 ATGHYVRRR-----DTDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH+G++ Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMY 232 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 +TIGQR+GLG+ A +P +V+ D +++ +IVG L + EI W+ Sbjct: 233 HTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN- 291 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + K K+R Q P +++ DG F+ + V GQ+ VFY + Sbjct: 292 ---PIDLSSPRKLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI- 347 Query: 374 EARVLGGGIIS 384 LGGG+I Sbjct: 348 ---CLGGGVIE 355 >gi|282159938|gb|ADA79329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. tularensis NE061598] Length = 378 Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 133/374 (35%), Positives = 207/374 (55%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ Sbjct: 21 ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQA 77 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F Y AG TP P + CN+ +KF LS LG Sbjct: 78 VCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 137 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY ++RL DG + + + +D +DQ+YFL+ Q+QL FP+G+++K Sbjct: 138 DYIATGHYAQTRL--AADGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 193 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ + + + A +G+I NG +G H+G Sbjct: 194 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 251 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINW 310 ++ YTIGQR+GLG+ + P F D +N+ + V + + + L+ E++W Sbjct: 252 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 311 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + G+ A D F+C K+R Q V+ N DG V V F++ + + GQ+ VFY Sbjct: 312 VA-GM---APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 367 Query: 370 SDSNEARVLGGGII 383 D LGGG+I Sbjct: 368 DDV----CLGGGVI 377 >gi|269838417|ref|YP_003320645.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Sphaerobacter thermophilus DSM 20745] gi|269787680|gb|ACZ39823.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Sphaerobacter thermophilus DSM 20745] Length = 353 Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 136/370 (36%), Positives = 192/370 (51%), Gaps = 24/370 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R++VA+SGGVDS+V A L+ G++ IG+ L+L++S S +G CC Q +DAR V + Sbjct: 3 RILVALSGGVDSAVAALTLQSLGWEPIGIHLRLFDSDPESIAEGVCCGDQAAFDARLVAN 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + YV D E F V SYA ETP PC+ CN V+ LL + LG + Sbjct: 63 WLGIPFYVRDLREEFSREVAGMTVESYARAETPNPCIACNHRVRIPALLRLADSLGIPAV 122 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R ++ VGD R + D RDQSY L+ T + L L FPLG++ KE+VR Sbjct: 123 ATGHYVR-KVRVGD----RWYLAESRDGRRDQSYALYRLTSEDLERLEFPLGELDKETVR 177 Query: 202 DLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 AR GL +ADK+ S D+CF + G ++V G ++ +G+++GRH GI Sbjct: 178 QRARAAGLPVADKAASVDLCFAKTAGGVGNLVAAARPETGKPGPLLDEHGRVVGRHPGIA 237 Query: 261 NYTIGQRRGLGV--AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 TIGQR GL + E +V +D + V V PR L + LR+ W G+ Sbjct: 238 YVTIGQRSGLQWDKTVPERRYVASIDPATRTVAVAPRARLLTRSVTLRDPIWHGE----- 292 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + +IR P F + DG V+F +A GQA V Y + RVL Sbjct: 293 ---PPKRAQARIRYQG---PRF-EVTCDGERVEFLDPGPPLAPGQAVVLY----DGPRVL 341 Query: 379 GGGIISGSKR 388 GGG + +R Sbjct: 342 GGGTAASVER 351 >gi|167010288|ref|ZP_02275219.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. holarctica FSC200] Length = 378 Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 133/374 (35%), Positives = 207/374 (55%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ Sbjct: 21 ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQA 77 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F Y AG TP P + CN+ +KF LS LG Sbjct: 78 VCDSIGIPFKKINFTAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 137 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY ++RL DG + + + +D +DQ+YFL+ Q+QL FP+G+++K Sbjct: 138 DYIATGHYAQTRL--AADGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 193 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ + + + A +G+I NG +G H+G Sbjct: 194 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 251 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINW 310 ++ YTIGQR+GLG+ + P F D +N+ + V + + + L+ E++W Sbjct: 252 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 311 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + G+ A D F+C K+R Q V+ N DG V V F++ + + GQ+ VFY Sbjct: 312 VA-GM---APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 367 Query: 370 SDSNEARVLGGGII 383 D LGGG+I Sbjct: 368 DDV----CLGGGVI 377 >gi|205822484|sp|Q1CRS3|MNMA_HELPH RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 342 Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 127/370 (34%), Positives = 203/370 (54%), Gaps = 36/370 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78 M++ V +SGGVDSS A LK G++++G+ L+L+ S K D+Y +A++ Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG Sbjct: 51 ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + + + + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 111 EKIATGHYARVK-----EIDKVSYIQEAVDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165 Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++ LA +G + +SQ+ICFV++ Y D +K+ + + EG + +L G+++G Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEVIG 222 Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G + YTIG+R+G + EP FVV +D + +IVG +E L H + + + D Sbjct: 223 THKGYMQYTIGKRKGFNIKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKD 282 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F+D + F+K R P FV D+ + V+FE+ GVA GQA V Y D Sbjct: 283 --FKDG-----EYFIKARYRSVPAKAFVSLRDEVIEVEFEEPFYGVAKGQALVVYKDDI- 334 Query: 374 EARVLGGGII 383 +LGGG+I Sbjct: 335 ---LLGGGVI 341 >gi|308183444|ref|YP_003927571.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori PeCan4] gi|308065629|gb|ADO07521.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori PeCan4] Length = 342 Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 126/370 (34%), Positives = 203/370 (54%), Gaps = 36/370 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78 M++ V +SGGVDSS A LK G++++G+ L+L+ S K D+Y +A++ Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG Sbjct: 51 ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + + + + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 111 EKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165 Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++ LA +G + +SQ+ICFV++ Y D +K+ + + EG + +L G+++G Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEVIG 222 Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G + YTIG+R+G + EP FVV +D + +IVG +E L H + + + + D Sbjct: 223 THKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLMKD 282 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F+D + F+K R P FV D + V+F++ GVA GQA V Y D Sbjct: 283 --FKDG-----EYFIKARYRSVPAKAFVSLKDGMIEVEFKEPFYGVAKGQALVVYKDDI- 334 Query: 374 EARVLGGGII 383 +LGGG+I Sbjct: 335 ---LLGGGVI 341 >gi|300768828|ref|ZP_07078722.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493561|gb|EFK28735.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 379 Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 195/382 (51%), Gaps = 26/382 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + RVVV MSGGVDSSVVA LLK+ GYDV+GV ++ ++ + G C A +D D +V Sbjct: 11 NTRVVVGMSGGVDSSVVALLLKQQGYDVVGVFMKNWDD---TDENGVCTATEDYKDVAKV 67 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + +Y ++E+ + + V F Y G TP P V CN+ +KF L LGAD Sbjct: 68 ADKIGIPYYSINFEKEYWDRVFTYFLDEYKKGRTPNPDVICNKEIKFKAFLDYAMDLGAD 127 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY +RL +DG + R +D +DQ+YFL + L + FPLG+M K Sbjct: 128 YIATGHY--ARLQHDEDGTMH--LLRGVDSNKDQTYFLSQLDSKTLQKVMFPLGEMVKPD 183 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA GL A K DS ICF+ + + + + A G ++ +GQ+ G H G+ Sbjct: 184 VRKLALNAGLATAKKKDSVGICFIGEKNFKEFLGHYLP--ATPGKMMTFDGQVKGEHAGL 241 Query: 260 INYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 + YTIGQRRGLG+ EP FVV D + + VG L + +++++ Sbjct: 242 MYYTIGQRRGLGIGGDGEDNEPWFVVGKDLKKNILYVGKGYHNPHLYATHLKASDLHFVT 301 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTS 370 D ED D F K R Q V V NDD V V F+ + GQA VFY Sbjct: 302 D---EDLGND-FHVTAKFRYRQKDSGVTVHFNDDHTEVTVTFDDPVRAITPGQAVVFY-- 355 Query: 371 DSNEARVLGGGIISGSKRSDAV 392 N LG G+I + + V Sbjct: 356 --NGEECLGSGMIDAAYNDERV 375 >gi|325970705|ref|YP_004246896.1| tRNA-specific 2-thiouridylase mnmA [Spirochaeta sp. Buddy] gi|324025943|gb|ADY12702.1| tRNA-specific 2-thiouridylase mnmA [Spirochaeta sp. Buddy] Length = 356 Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 132/372 (35%), Positives = 194/372 (52%), Gaps = 29/372 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR---KGSCCA---GQDVY 74 M+V+V MSGG+DSSV A LLK+ G++V+GVT+ ++N R R SC A +D+ Sbjct: 1 MKVLVGMSGGIDSSVAAYLLKQQGHEVMGVTMTIWNKRSHLTRPLNSTSCFAPDKTEDII 60 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 +++C+ I + H V + + F V+ F + Y G TP PCV CN +KF ++ + Sbjct: 61 AIKKICEKIGIEHQVLELSDLFEEIVLANFKTEYMDGRTPNPCVWCNSKIKFGAMVEYAK 120 Query: 135 QLGADV--LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + G D ATGHY R V ++G R + + +DL++DQSYFL+ QQQL FPL Sbjct: 121 ESGLDFDRFATGHYAR---IVEENG--RYAVAKAVDLKKDQSYFLYRLNQQQLARTLFPL 175 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G M KE VR + G + +SQD D+ R G+IV+ G++ Sbjct: 176 GAMTKEEVRRIDVAQGFHKVYQEESQDFYDGDYTDLLDITSR-------PGNIVNRQGRV 228 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 LGRH GI +YTIGQR+GLG+A PL+V+ L +++ V+VG E + ++ W Sbjct: 229 LGRHEGIWHYTIGQRKGLGIAAERPLYVLALRSDTNEVVVGFVEDTLQSTVTAGDVVWSS 288 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVAS-GQACVFYTSD 371 + V+ KIRS+ +N DG EV A+ GQ+ V Y Sbjct: 289 VQTLQQEVM----VQAKIRSTGFATEAKAHQNPDGSITAIFSDEVKAATVGQSLVLY--- 341 Query: 372 SNEARVLGGGII 383 + +L GGII Sbjct: 342 -DGPVILCGGII 352 >gi|28378785|ref|NP_785677.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus plantarum WCFS1] gi|254556990|ref|YP_003063407.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus plantarum JDM1] gi|308180978|ref|YP_003925106.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus plantarum subsp. plantarum ST-III] gi|38258513|sp|Q88V96|MNMA_LACPL RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|28271622|emb|CAD64528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus plantarum WCFS1] gi|254045917|gb|ACT62710.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus plantarum JDM1] gi|308046469|gb|ADN99012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 374 Score = 209 bits (531), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 141/382 (36%), Positives = 195/382 (51%), Gaps = 26/382 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + RVVV MSGGVDSSVVA LLK+ GYDV+GV ++ ++ + G C A +D D +V Sbjct: 6 NTRVVVGMSGGVDSSVVALLLKQQGYDVVGVFMKNWDD---TDENGVCTATEDYKDVAKV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + +Y ++E+ + + V F Y G TP P V CN+ +KF L LGAD Sbjct: 63 ADKIGIPYYSINFEKEYWDRVFTYFLDEYKKGRTPNPDVICNKEIKFKAFLDYAMDLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY +RL +DG + R +D +DQ+YFL + L + FPLG+M K Sbjct: 123 YIATGHY--ARLQHDEDGTMH--LLRGVDSNKDQTYFLSQLDSKTLQKVMFPLGEMVKPD 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA GL A K DS ICF+ + + + + A G ++ +GQ+ G H G+ Sbjct: 179 VRKLALNAGLATAKKKDSVGICFIGEKNFKEFLGHYLP--ATPGKMMTFDGQVKGEHAGL 236 Query: 260 INYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 + YTIGQRRGLG+ EP FVV D + + VG L + +++++ Sbjct: 237 MYYTIGQRRGLGIGGDGEDNEPWFVVGKDLKKNILYVGKGYHNPHLYATHLKASDLHFVT 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTS 370 D ED D F K R Q V V NDD V V F+ + GQA VFY Sbjct: 297 D---EDLGND-FHVTAKFRYRQKDSGVTVHFNDDHTEVTVTFDDPVRAITPGQAVVFY-- 350 Query: 371 DSNEARVLGGGIISGSKRSDAV 392 N LG G+I + + V Sbjct: 351 --NGEECLGSGMIDAAYNDERV 370 >gi|302035751|ref|YP_003796073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Nitrospira defluvii] gi|300603815|emb|CBK40147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Nitrospira defluvii] Length = 360 Score = 209 bits (531), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 133/372 (35%), Positives = 199/372 (53%), Gaps = 25/372 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-------KASKRKGSCCAGQDVYD 75 V++ MSGGVDSSV A+LL + GYDV G+TLQ++ K + +G C G Y Sbjct: 6 VLLGMSGGVDSSVAASLLVQQGYDVHGITLQVWEHEDDQIAVSKRWEERGCCKIGIAKYV 65 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+R + + + V D E F+ VI F + YA+G TP PCV CN VK L ++ ++ Sbjct: 66 AQR----LRIPYEVVDRREVFQQGVIDDFVAGYASGTTPNPCVRCNERVKLRSLYALAQE 121 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 G D +ATGHY R + G + + R +D +DQSYFL+ L L FP+G M Sbjct: 122 RGMDHVATGHYARVQQVNG-----QWSLHRALDARKDQSYFLYRINPAWLPRLLFPVGHM 176 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K V A +GL + + +SQ+ICFV G Y +++ G V ++G++LG+ Sbjct: 177 QKCDVWQEAESLGLPVEELKESQEICFVSHGDYRTFIEQEMPEAKKPGSFVGVDGEVLGQ 236 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H GI YT GQRRGLG+A+G+ L+V + S +V++ + L + +++ L Sbjct: 237 HAGIAFYTPGQRRGLGIAVGQRLYVQKVVPESGQVVLCAEDQLVQSECQVADLSLFDHAL 296 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374 VV VK+R + P + ++ G + V F + + ++ GQ+ VFY D Sbjct: 297 GRQPVVAD----VKVRYATPPCQATLLPSEIGTLQVRFHQPQRALSPGQSAVFYDGD--- 349 Query: 375 ARVLGGGIISGS 386 RVLGGGII S Sbjct: 350 -RVLGGGIIQRS 360 >gi|317495071|ref|ZP_07953443.1| tRNA methyl transferase [Gemella moribillum M424] gi|316914843|gb|EFV36317.1| tRNA methyl transferase [Gemella moribillum M424] Length = 370 Score = 209 bits (531), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 135/370 (36%), Positives = 191/370 (51%), Gaps = 25/370 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV MSGGVDSSV A LLK+ GYDVIGV ++ + + +G C A +D D +VC+ Sbjct: 6 KVVVGMSGGVDSSVTAYLLKQQGYDVIGVFMKNWEEKDD---RGGCVAEKDYEDVIKVCE 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +Y ++E+ + N V F Y G TP P + CN+ +KF L LGAD + Sbjct: 63 QLDIPYYSINFEKEYWNKVFTYFLDEYKKGRTPNPDIMCNKEIKFKVFLEYAEDLGADYV 122 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + D +R++ R +D +DQ+YFL Q Q+ ++ FP+G+++K+ VR Sbjct: 123 ATGHYARVK-----DEDNQRLLLRGVDNNKDQTYFLSQLKQHQIKNILFPVGELEKKDVR 177 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A E GL A K DS ICF+ + + + + + A G +V L+G I G H G+++ Sbjct: 178 RIAEEAGLATAKKKDSTGICFIGEKNFREFLSQYLP--AKSGKMVDLDGNIRGEHVGLMH 235 Query: 262 YTIGQRRGLGVAM-----GEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 YTIGQR GLG+ GE F L+KN V G L Sbjct: 236 YTIGQRHGLGIGGTKDTDGEAWFACGKDLEKNILYVCQGFHNEKLYSDSLLASSLSF--- 292 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 +D + F C K R Q V V+ DD V V ++ V GQA VFY D Sbjct: 293 TTKDPQPNKFTCTAKFRYRQPDTEVDVEILEDDKVKVVYKNPVRAVTPGQAVVFYDGDV- 351 Query: 374 EARVLGGGII 383 LGG II Sbjct: 352 ---CLGGAII 358 >gi|104781327|ref|YP_607825.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas entomophila L48] gi|122403646|sp|Q1IBE4|MNMA_PSEE4 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|95110314|emb|CAK15021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas entomophila L48] Length = 374 Score = 209 bits (531), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 128/380 (33%), Positives = 207/380 (54%), Gaps = 26/380 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+P RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ D Sbjct: 7 KDPAKTRVIVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLAD 63 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ VCD I + + ++ + + V F Y AG TP P + CNR +KF L Sbjct: 64 AQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALS 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD++ATGHY+R R D G+ ++ + +D +DQSYFL A +++ FP+G++ Sbjct: 124 LGADLIATGHYVRRR----DTGELTELL-KGLDPNKDQSYFLHAVGGKEIARTLFPVGEL 178 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + GL A K DS ICF+ + ++ D +K+ A G+I G+++GR Sbjct: 179 EKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGEIQTTEGEVIGR 236 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 H+G++ +TIGQR+GLG+ A EP +V++ D + ++VG + E ++ R + Sbjct: 237 HHGLMYHTIGQRQGLGIGGLKDAGDEPWYVLHKDLARNVLVVG--QGNEHPWLFSRAL-- 292 Query: 311 LGDGLFEDAVVD---GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 L +F +D + K+R Q ++R ++G F++ + V GQ+ VF Sbjct: 293 LASEIFWVNPIDLSSPRRLTAKVRYRQGDQQCTLERTENGYRAMFDEPQRAVTPGQSVVF 352 Query: 368 YTSDSNEARVLGGGIISGSK 387 Y + LGGG+I ++ Sbjct: 353 YDGEV----CLGGGVIETAE 368 >gi|27366203|ref|NP_761731.1| tRNA-specific 2-thiouridylase MnmA [Vibrio vulnificus CMCP6] gi|30173408|sp|Q8CWJ6|MNMA_VIBVU RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|27362403|gb|AAO11258.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio vulnificus CMCP6] Length = 374 Score = 209 bits (531), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 129/375 (34%), Positives = 200/375 (53%), Gaps = 28/375 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + S+ C A +D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDDSEY---CTAAEDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 65 KLGIHLHKINFASEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R ++G++ + M R +D +DQSYFL+ + +Q+ FP+GD++K V Sbjct: 125 IAMGHYVRRSF--PENGEKPQ-MLRGLDGNKDQSYFLYTLSHEQVARSLFPVGDLEKPEV 181 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A K DS ICF+ + K+ D + R A G+I G++LG+H G++ Sbjct: 182 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGNIESPEGEVLGQHQGLM 239 Query: 261 NYTIGQRRGLGVAMG-------EPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINW 310 +T+GQR+GL + EP FV D + +I L+ + +++W Sbjct: 240 YHTLGQRKGLHIGGRKGGGGNEEPWFVAEKDLKRNVLIAVQGQDHPMLKSEGLIASQLHW 299 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + D V KC VK R Q +P + +D+ + V F++ E+ V GQ+ VFY Sbjct: 300 VEREPIRDVV----KCTVKTRYRQQDIPCTIIPIDDENIKVIFDEPEIAVTPGQSAVFYQ 355 Query: 370 SDSNEARVLGGGIIS 384 D LGGGII Sbjct: 356 GDV----CLGGGIIE 366 >gi|259506284|ref|ZP_05749186.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium efficiens YS-314] gi|259166064|gb|EEW50618.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium efficiens YS-314] Length = 359 Score = 209 bits (531), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 140/371 (37%), Positives = 194/371 (52%), Gaps = 23/371 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVCDTINV 85 MSGGVDS+V A+ G++V+GV L L ++ + CC+ +D DARRVCD + + Sbjct: 1 MSGGVDSAVAASRAVAAGHEVVGVHLALSRDPQSVRESSRGCCSLEDSADARRVCDKLGI 60 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145 YV+D+ +RF+ VI F SYA GETP PC+ CN +KF+ LL LG D + TGH Sbjct: 61 PFYVWDFSDRFKEDVIDDFIDSYAIGETPNPCLRCNEKIKFAALLERGIALGFDAVVTGH 120 Query: 146 YIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 Y R ++ G DG R R +D+ +DQSY L ++ FP+GD K +R+ A Sbjct: 121 YARLTQPADGGDGYLR----RGVDMNKDQSYVLGVLGAHEIAHCMFPVGDTVKPEIREEA 176 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNGIINYT 263 G +A K DS DICF+ G + + I L G IV G L H G+ +T Sbjct: 177 AASGFSVAKKPDSYDICFIPDG---NTQAFLGKHIGLRPGMIVDREGTTLREHAGVHEFT 233 Query: 264 IGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 IGQR+GL + A G P +V +D + V VG RE LEV I+ + +L Sbjct: 234 IGQRKGLDIKEPAADGRPRYVTDIDAATGTVTVGSREDLEVGVIHADRLKFL------HP 287 Query: 320 VVDG-FKCFVKIRSSQDPVPVF--VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 +DG C V++R+ V + R D + +D +S GVA GQA V Y D Sbjct: 288 AMDGELDCEVQVRAHGGVVKCHARIDRTADTMRLDLAESLSGVARGQAAVLYLPDPEGDI 347 Query: 377 VLGGGIISGSK 387 VLG G I G++ Sbjct: 348 VLGSGTICGTE 358 >gi|319957080|ref|YP_004168343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitratifractor salsuginis DSM 16511] gi|319419484|gb|ADV46594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitratifractor salsuginis DSM 16511] Length = 340 Score = 209 bits (531), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 133/367 (36%), Positives = 204/367 (55%), Gaps = 33/367 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + +V+V MSGGVDS+V A LL+++GY+V+GV ++L+++ + ++ ARRV Sbjct: 3 EKKVLVGMSGGVDSTVAALLLQKEGYEVVGVYMKLHDNEAYHR--------ENYAKARRV 54 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + V + D FR V F Y G TP PCV CNR +KF +L LG + Sbjct: 55 GEYLGVEVHFLDISGDFRQEVYDYFVEEYRTGRTPNPCVVCNRQIKFGRMLEFADSLGIE 114 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+RS DG R + D +DQSYFL ++ + L FPLG+ KE Sbjct: 115 KVATGHYVRS------DG---RYIYMARDRSKDQSYFLAQVRKEVIPRLLFPLGEWLKEE 165 Query: 200 VRDLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 V+ A E+ + D+A + +S +ICFV+ Y +V++R + I EG++++ G+++G H Sbjct: 166 VKAYAAEIPVLQDLATQKESSEICFVEN-DYTEVLQR-HMEIDREGEVLNEAGEVVGTHK 223 Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G ++YTIG+RRG V +P +V+ +D +R++VG RE LE + IN LF Sbjct: 224 GYMHYTIGKRRGFTVRGAHDPHYVLSVDPERNRIVVGTREKLEERSFEISRIN-----LF 278 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 ED + F C VK+R +P V + + V+ + G+A GQ VFY + R Sbjct: 279 ED--LTEFDCQVKVRYRTRAIPAHVVIDGERGRVELGEPVYGLARGQFAVFYDGE----R 332 Query: 377 VLGGGII 383 +LGGG I Sbjct: 333 LLGGGEI 339 >gi|258646059|ref|ZP_05733528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dialister invisus DSM 15470] gi|260403430|gb|EEW96977.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dialister invisus DSM 15470] Length = 350 Score = 209 bits (531), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 133/366 (36%), Positives = 194/366 (53%), Gaps = 29/366 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVVAMSGGVDS++ A LL+ GYDV G T+ ++ GQD+ +A+++ D Sbjct: 6 KVVVAMSGGVDSTLTARLLQEAGYDVYGATMNQFD-------------GQDMTEAQKIAD 52 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GADV 140 + + H V D + +++ V+ F SY G TP PC+ C+ +KF R Sbjct: 53 FLGIPHKVIDVRKMYQDIVLSYFVDSYKNGITPNPCMMCDFKIKFGFFYDTVRAFFDCPY 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMC-RPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ATGHY R + DG RR+ + DL +DQSY ++ TQ QL + FPLG + K+ Sbjct: 113 FATGHYAR----ITYDGTRRKYQVEKATDLAKDQSYMMYHLTQDQLAHILFPLGRIYKKD 168 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNG 258 R ++ E GL +K++SQDICF+ K + + +A A G+I G+ILG H G Sbjct: 169 TRRISEEKGLPTYNKAESQDICFLTSEKSYAEFLQNHAPEAFRPGNITDTKGRILGTHKG 228 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 + YTIGQR+GLG+A PL+VV L +RVIVG + L + E+++ DG Sbjct: 229 LPFYTIGQRKGLGIASRTPLYVVSLHAGKNRVIVGSNDDLFRSGLLANELDFT-DGA--- 284 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 F+C KIR V ++ G V F++ + + GQ+ VFY E R+ Sbjct: 285 PPSQQFRCRAKIRYGIHVHNCTVTLDNHGRAAVKFDEPQRAITPGQSVVFY----EENRL 340 Query: 378 LGGGII 383 LGGG I Sbjct: 341 LGGGTI 346 >gi|115314034|ref|YP_762757.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp. holarctica OSU18] gi|254366943|ref|ZP_04982980.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. holarctica 257] gi|115128933|gb|ABI82120.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|134252770|gb|EBA51864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. holarctica 257] Length = 381 Score = 209 bits (531), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 133/374 (35%), Positives = 207/374 (55%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ Sbjct: 24 ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQA 80 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F Y AG TP P + CN+ +KF LS LG Sbjct: 81 VCDSIGIPFKKINFTAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 140 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY ++RL DG + + + +D +DQ+YFL+ Q+QL FP+G+++K Sbjct: 141 DYIATGHYAQTRL--AADGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 196 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ + + + A +G+I NG +G H+G Sbjct: 197 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 254 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINW 310 ++ YTIGQR+GLG+ + P F D +N+ + V + + + L+ E++W Sbjct: 255 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 314 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + G+ A D F+C K+R Q V+ N DG V V F++ + + GQ+ VFY Sbjct: 315 VA-GM---APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 370 Query: 370 SDSNEARVLGGGII 383 D LGGG+I Sbjct: 371 DDV----CLGGGVI 380 >gi|226944910|ref|YP_002799983.1| tRNA-specific 2-thiouridylase MnmA [Azotobacter vinelandii DJ] gi|226719837|gb|ACO79008.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Azotobacter vinelandii DJ] Length = 372 Score = 209 bits (531), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 131/385 (34%), Positives = 203/385 (52%), Gaps = 29/385 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 +P RV+V MSGGVDSSV A LL + GY V G+ ++ + ++ C A +D+ DA Sbjct: 3 DPAHTRVIVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWEEDDGTE---YCTAKEDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + VCD I + + ++ + + V F + Y AG TP P + CNR +KF L L Sbjct: 60 QAVCDRIGMRLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALSL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD++ATGHY+R R D + R + + +D +DQSYFL A +QL FP+G+++ Sbjct: 120 GADMIATGHYVRRR-----DAEDRTELLKGLDPNKDQSYFLHAVASEQLAKSLFPVGELE 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K +VR +A GL A K DS ICF+ + ++ D +K+ A G I G+++G+H Sbjct: 175 KPAVRAIAELHGLATARKKDSTGICFIGERRFGDFLKQYLP--ARPGPIETTEGKVIGQH 232 Query: 257 NGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308 +G++ +TIGQR+GLG+ A +P +V+ D + +IVG L ++ E+ Sbjct: 233 HGLMYHTIGQRQGLGIGGMKNATEDPWYVLAKDLTRNVLIVGQGNQHPWLFSRALHTSEM 292 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 W+ F + K+R Q +++ D G V F++ + V GQ+ V Y Sbjct: 293 FWVNPPDFPLPR----RLAAKVRYRQGDQTCTLEKTDQGFRVLFDEPQRAVTPGQSVVLY 348 Query: 369 TSDSNEARVLGGGIISGS---KRSD 390 D LGGG+I + KR D Sbjct: 349 DGDV----CLGGGVIETAEPWKRED 369 >gi|328676178|gb|AEB27048.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Francisella cf. novicida Fx1] Length = 359 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 133/374 (35%), Positives = 207/374 (55%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ Sbjct: 2 ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F Y AG TP P + CN+ +KF LS LG Sbjct: 59 VCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R+R V +DG + + + +D +DQ+YFL+ Q+QL FP+G+++K Sbjct: 119 DYIATGHYARTR--VLEDGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ + + + A +G+I NG +G H+G Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKFLP--AQKGEIHDENGIKIGMHDG 232 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINW 310 ++ YTIGQR+GLG+ + P F D +N+ + V + + + L+ E++W Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + G+ A D F+C K+R Q V+ N D V V F++ + + GQ+ VFY Sbjct: 293 VA-GM---APADKFRCAAKVRYRQKDQSCEVEVNQDASVNVTFDQPQRAITPGQSVVFYI 348 Query: 370 SDSNEARVLGGGII 383 D LGGG+I Sbjct: 349 DDV----CLGGGVI 358 >gi|289625417|ref|ZP_06458371.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649300|ref|ZP_06480643.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. aesculi str. 2250] gi|330866846|gb|EGH01555.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 366 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 196/371 (52%), Gaps = 26/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 3 RVIVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F Y AG TP P + CNR +KF L LGAD++ Sbjct: 60 KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K VR Sbjct: 120 ATGHYVRRR-----DTDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH+G++ Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMY 232 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 +TIGQR+GLG+ A +P +V+ D +++ +IVG L + EI W+ Sbjct: 233 HTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN- 291 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + K K+R Q P +++ DG F+ + V GQ+ VFY + Sbjct: 292 ---PIDLSSPRKLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI- 347 Query: 374 EARVLGGGIIS 384 LGGG+I Sbjct: 348 ---CLGGGVIE 355 >gi|330965599|gb|EGH65859.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. actinidiae str. M302091] Length = 366 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 196/371 (52%), Gaps = 26/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 3 RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F Y AG TP P + CNR +KF L LGAD++ Sbjct: 60 KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K VR Sbjct: 120 ATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH+G++ Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMY 232 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 +TIGQR+GLG+ A +P +V+ D +++ +IVG L + EI W+ Sbjct: 233 HTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN- 291 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + K K+R Q P +++ DG F+ + V GQ+ VFY + Sbjct: 292 ---PIDLSSPRKLTAKVRYRQSDQPCTLEKTTDGYRATFDDPQRAVTPGQSVVFYDGEI- 347 Query: 374 EARVLGGGIIS 384 LGGG+I Sbjct: 348 ---CLGGGVIE 355 >gi|56708687|ref|YP_170583.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp. tularensis SCHU S4] gi|110671159|ref|YP_667716.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp. tularensis FSC198] gi|254875562|ref|ZP_05248272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|56605179|emb|CAG46310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110321492|emb|CAL09693.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|254841561|gb|EET19997.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] Length = 381 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 133/374 (35%), Positives = 207/374 (55%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ Sbjct: 24 ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQA 80 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F Y AG TP P + CN+ +KF LS LG Sbjct: 81 VCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 140 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY ++RL DG + + + +D +DQ+YFL+ Q+QL FP+G+++K Sbjct: 141 DYIATGHYAQTRL--AADGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 196 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ + + + A +G+I NG +G H+G Sbjct: 197 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 254 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINW 310 ++ YTIGQR+GLG+ + P F D +N+ + V + + + L+ E++W Sbjct: 255 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 314 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + G+ A D F+C K+R Q V+ N DG V V F++ + + GQ+ VFY Sbjct: 315 VA-GM---APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 370 Query: 370 SDSNEARVLGGGII 383 D LGGG+I Sbjct: 371 DDV----CLGGGVI 380 >gi|37679527|ref|NP_934136.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio vulnificus YJ016] gi|61217310|sp|Q7MLT4|MNMA_VIBVY RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|37198271|dbj|BAC94107.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Vibrio vulnificus YJ016] Length = 374 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 128/375 (34%), Positives = 201/375 (53%), Gaps = 28/375 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + S+ C A +D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDDSEY---CTAAEDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F S Y AG TP P + CN+ +KF L + L AD Sbjct: 65 KLGIHLHKINFAAEYWDNVFEYFLSEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R ++G++ + M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 125 IAMGHYVRRSF--PENGEKPQ-MLRGLDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 181 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A K DS ICF+ + K+ D + R A G+I G++LG+H G++ Sbjct: 182 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGNIESPEGEVLGQHQGLM 239 Query: 261 NYTIGQRRGLGVAMG-------EPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINW 310 +T+GQR+GL + EP FV D + +I L+ + +++W Sbjct: 240 YHTLGQRKGLHIGGRKGGGGNEEPWFVAEKDLKRNVLIAVQGQDHPMLKSEGLIASQLHW 299 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + + D KC VK R Q +P + +D+ + V F++ E+ V GQ+ VFY Sbjct: 300 VE----REPIRDVMKCTVKTRYRQQDIPCTIIPIDDENIKVIFDEPEIAVTPGQSAVFYQ 355 Query: 370 SDSNEARVLGGGIIS 384 D LGGGII Sbjct: 356 GDV----CLGGGIIE 366 >gi|208435231|ref|YP_002266897.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori G27] gi|229486341|sp|B5Z8Y2|MNMA_HELPG RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|208433160|gb|ACI28031.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori G27] Length = 342 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 127/370 (34%), Positives = 202/370 (54%), Gaps = 36/370 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78 M++ V +SGGVDSS A LK G++++GV L+L+ S K D+Y +A++ Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGVYLKLHASEKK----------HDLYIKNAQK 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + V D+++ F++ V F S+Y G+TP PC CN +KF L +LG Sbjct: 51 ACEFLGIPLEVLDFQKDFKSTVYDEFISAYEEGQTPNPCTLCNPLMKFGLALDHALKLGC 110 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + + + + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 111 EKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165 Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++ LA +G + +SQ+ICFV++ Y D +K+ + + EG + +L G+I+G Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222 Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G + YTIG+R+G + EP FVV +D + +IVG +E L H + + + + D Sbjct: 223 THKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLMKD 282 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F+ + F+K R P FV D+ + V F++S GVA GQA V Y D Sbjct: 283 --FKSG-----EYFIKARYRSVPTKAFVSLKDEMIEVGFKESFYGVAKGQALVVYKDDI- 334 Query: 374 EARVLGGGII 383 +LGGG+I Sbjct: 335 ---LLGGGVI 341 >gi|283955497|ref|ZP_06372992.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni 1336] gi|283792958|gb|EFC31732.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni 1336] Length = 338 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 125/367 (34%), Positives = 197/367 (53%), Gaps = 34/367 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++VAMSGGVDS+V A LK G++VIG ++L+ + +++ +V Sbjct: 1 MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVA 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + +++ D +E F+N V +PF +Y G+TP PC CNR +K LL + LG + Sbjct: 53 NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R ++ +D +DQSYFL + ++ L L FPLG+MKKE V Sbjct: 113 LATGHYARL---------ENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163 Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 + A E+ A + +S +ICFV+ Y V+ + + G+++ +G+++G+H G Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQF-MDTKIPGEVLDSSGKVVGKHEG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V EP FV+ ++ +++IVG +E L++ L+ IN LF Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFKLKNIN-----LFI 276 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 DA C VKIR P V+ D + + G+ASGQ VFY D + Sbjct: 277 DA--KELDCEVKIRYRSKSTPCKVEIYEDKSAKITLKNPVYGLASGQMAVFYDYD----K 330 Query: 377 VLGGGII 383 V+ G I Sbjct: 331 VIASGFI 337 >gi|330875781|gb|EGH09930.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 366 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 196/371 (52%), Gaps = 26/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 3 RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F Y AG TP P + CNR +KF L LGAD++ Sbjct: 60 KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K VR Sbjct: 120 ATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH+G++ Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMY 232 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 +TIGQR+GLG+ A +P +V+ D +++ +IVG L + EI W+ Sbjct: 233 HTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN- 291 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + K K+R Q P +++ DG F+ + V GQ+ VFY + Sbjct: 292 ---PIDLSSPRKLTAKVRYRQSDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI- 347 Query: 374 EARVLGGGIIS 384 LGGG+I Sbjct: 348 ---CLGGGVIE 355 >gi|329936861|ref|ZP_08286540.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Streptomyces griseoaurantiacus M045] gi|329303786|gb|EGG47670.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Streptomyces griseoaurantiacus M045] Length = 376 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 144/390 (36%), Positives = 204/390 (52%), Gaps = 28/390 (7%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAG 70 D + + +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G+ CC Sbjct: 4 DTPQTRRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 62 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 +D DARR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 63 EDSRDARRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALL 122 Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 LG D + TGHY +++ + +DG R + R D+ +DQSY L ++QL F Sbjct: 123 DKALALGFDAVCTGHY--AQVILREDGTRE--LHRASDMAKDQSYVLGVLDERQLAHAMF 178 Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVH 247 PLGD KE +R A GL +A K DS DICF+ G + KR+ EGDIV Sbjct: 179 PLGDTVTTKEEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLSKRLGRA---EGDIVD 235 Query: 248 LNGQILGRHNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 +G +G H G +TIGQR+GL + A G+P +V+ + ++ V VGP +L+V + Sbjct: 236 ESGTKVGTHEGAFGFTIGQRKGLRIGTPAADGKPRYVLDISPVTNTVTVGPAAALDVDAL 295 Query: 304 YLREINWLGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362 + W G G + ++R+ + V + D + V F GVA G Sbjct: 296 TAVKPRWCG------TAPSGPGTYTAQLRAHGEETEVSAELVDGALEVTFTTPVRGVAPG 349 Query: 363 QACVFYTSDSNEARVLGGGIISGSKRSDAV 392 QA V Y RV+G I+ ++R+ A Sbjct: 350 QAVVLYQG----TRVVGSATIASTRRAVAA 375 >gi|210135491|ref|YP_002301930.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori P12] gi|210133459|gb|ACJ08450.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase [Helicobacter pylori P12] Length = 362 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 130/384 (33%), Positives = 209/384 (54%), Gaps = 37/384 (9%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 RL ++ ++ K M++ V +SGGVDSS A LK G++++G+ L+L+ S K Sbjct: 8 ARLRAITFNERIK-MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK------ 60 Query: 67 CCAGQDVY--DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 D+Y +A++ C+ + + V D+++ F++AV F ++Y G+TP PC CN + Sbjct: 61 ----HDLYIKNAQKACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLM 116 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 KF L +LG + +ATGHY R + + + + +D +DQSYFL+A + Sbjct: 117 KFGLALDHALKLGCEKIATGHYARVK-----EIDKISYIQEALDKTKDQSYFLYALEHEV 171 Query: 185 LCDLRFPLGDMKKESVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 + L FPLGD+ K+ ++ LA +G + +SQ+ICFV++ Y D +K+ + + Sbjct: 172 IAKLVFPLGDLLKKDIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVE 228 Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLE 299 EG + +L G+I+G H G + YTIG+R+G V EP FVV +D + +IVG +E L Sbjct: 229 KEGVVKNLQGEIIGTHKGYMQYTIGKRKGFNVKGALEPHFVVGIDAKKNELIVGKKEDLA 288 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV 359 H + + + + D F+ + F+K R P FV D+ + V FE+ GV Sbjct: 289 THSLKAKNKSLMKD--FKSG-----EYFIKARYRSVPAKAFVSLRDEVIEVGFEEPFYGV 341 Query: 360 ASGQACVFYTSDSNEARVLGGGII 383 A GQA V Y D +LGGG+I Sbjct: 342 AKGQALVVYKDDI----LLGGGVI 361 >gi|206889455|ref|YP_002249424.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206889622|ref|YP_002249374.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741393|gb|ACI20450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741560|gb|ACI20617.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 342 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 123/365 (33%), Positives = 196/365 (53%), Gaps = 33/365 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++AMSGG+DSSV A LL+ G V GV L++ ++ A++ + Sbjct: 3 KVLLAMSGGIDSSVAAYLLREKGMAVEGVFFILFDE------------PANIELAKQTAN 50 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +N+ ++ D E+F+ VI PF Y G TP PCV CN+ +KF L + ++ A+ + Sbjct: 51 FLNIKLHIEDLREKFKADVITPFFEGYKKGITPNPCVICNKKIKFPLLKFLAEKVKANYI 110 Query: 142 ATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY R R+ ++ + +D ++DQSYFL+ + L + FPLG+ K + Sbjct: 111 ATGHYARIVRI------NNIPLLMKGIDPKKDQSYFLYGIERTLLSHIIFPLGEYTKYKI 164 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A ++G+ +S ++CF++ +Y++ ++ G +E G+I+G+H GI Sbjct: 165 REIAEKVGIPSKVAEESTEVCFLRDKRYYESIRPTKGGPIIEMS----TGKIIGQHRGIH 220 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQR+ LG+A PL+VV ++ + + V V +E + + E+NWL D E+ Sbjct: 221 LYTIGQRKRLGIASPHPLYVVKIEPSENAVYVDSKEKAFMREFVVNELNWLCDIEKEE-- 278 Query: 321 VDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 F C VKIR + +P V N D V FEK + GQ+ VFY D VLG Sbjct: 279 ---FSCQVKIRYAMNPEKATVTLINKDRANVVFEKPQFAPTPGQSAVFYNGDI----VLG 331 Query: 380 GGIIS 384 GG+I Sbjct: 332 GGVIK 336 >gi|302381006|ref|ZP_07269467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Finegoldia magna ACS-171-V-Col3] gi|302311227|gb|EFK93247.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Finegoldia magna ACS-171-V-Col3] Length = 366 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 127/353 (35%), Positives = 201/353 (56%), Gaps = 20/353 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 ++VVV +SGGVDSSV A LLK+ GYDV+G+ ++ ++ + G C A +D DA V Sbjct: 6 IKVVVGISGGVDSSVAALLLKQQGYDVVGIFMKNWDE---TDDDGVCTAEEDYKDAVAVA 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + I + +Y ++E+ + + V F Y G TP P + CN+ +KF L +LGAD Sbjct: 63 NEICIDYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAMKLGADY 122 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY +R+ GDDG + + R +D +DQ+YFL TQ Q+ ++ FP+G+++K+ V Sbjct: 123 VATGHY--ARIERGDDGVK---LLRGLDNNKDQTYFLSQLTQDQIKNVMFPVGELQKKEV 177 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A++ L ADK DS ICF+ + + + + A +G+IV ++G I+G+HNG++ Sbjct: 178 REIAKKYNLATADKKDSTGICFIGERNFNEFLSHYLP--AKQGNIVDVDGNIMGKHNGLM 235 Query: 261 NYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLGDGLF 316 +TIGQRRGLG+ G FV + + +IV E L +++Y + + L Sbjct: 236 YHTIGQRRGLGIGGDGAAWFVCGKNLEKNELIVCQGEDNPLLYSNKLYASQFETSLNHLD 295 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 + F C K R Q + V+ DD V V ++ ++ V GQA VFY Sbjct: 296 RNE----FDCTAKFRYRQKDIKAHVKFIDDTHVEVTYDDTK-AVTPGQAAVFY 343 >gi|254375237|ref|ZP_04990717.1| hypothetical protein FTDG_01428 [Francisella novicida GA99-3548] gi|151572955|gb|EDN38609.1| hypothetical protein FTDG_01428 [Francisella novicida GA99-3548] Length = 359 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 133/374 (35%), Positives = 208/374 (55%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ Sbjct: 2 ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F Y AG TP P + CN+ +KF LS LG Sbjct: 59 VCDSIGIRFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R+R V +DG + + + +D +DQ+YFL+ Q+QL FP+G+++K Sbjct: 119 NYIATGHYARTR--VLEDGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ + + + A +G+I NG +G H+G Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 232 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINW 310 ++ YTIGQR+GLG+ + P F D +N+ + V + + + L+ E++W Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + G+ A D F+C K+R Q V+ N DG V V F++ + + GQ+ VFY Sbjct: 293 VA-GM---APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348 Query: 370 SDSNEARVLGGGII 383 D LGGG+I Sbjct: 349 DDV----CLGGGVI 358 >gi|71735842|ref|YP_275272.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. phaseolicola 1448A] gi|123635957|sp|Q48H61|MNMA_PSE14 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71556395|gb|AAZ35606.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A] Length = 376 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 128/376 (34%), Positives = 198/376 (52%), Gaps = 26/376 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N + RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA Sbjct: 8 NSEMKRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADA 64 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + VCD I + + ++ + + V F Y AG TP P + CNR +KF L L Sbjct: 65 QAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALML 124 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++ Sbjct: 125 GADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELE 179 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH Sbjct: 180 KPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRH 237 Query: 257 NGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 +G++ +TIGQR+GLG+ A +P +V+ D +++ +IVG L + EI Sbjct: 238 SGLMYHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEI 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + K K+R Q P +++ DG F+ + V GQ+ VFY Sbjct: 298 YWVN----PIDLSSPRKLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFY 353 Query: 369 TSDSNEARVLGGGIIS 384 + LGGG+I Sbjct: 354 DGEI----CLGGGVIE 365 >gi|121613044|ref|YP_999778.1| tRNA-specific 2-thiouridylase MnmA [Campylobacter jejuni subsp. jejuni 81-176] gi|167004752|ref|ZP_02270510.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni 81-176] gi|166234848|sp|A1VXD7|MNMA_CAMJJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|87249047|gb|EAQ72009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni 81-176] Length = 338 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 125/367 (34%), Positives = 197/367 (53%), Gaps = 34/367 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++VAMSGGVDS+V A LK G++VIG ++L+ + +++ +V Sbjct: 1 MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVA 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + +++ D +E F+N V +PF +Y G+TP PC CNR +K LL + LG + Sbjct: 53 NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R ++ +D +DQSYFL + ++ L L FPLG+MKKE V Sbjct: 113 LATGHYARL---------ENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163 Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 + A E+ A + +S +ICFV+ Y V+ + + G+++ +G+++G+H G Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQF-MDTKIPGEVLDSSGKVVGKHEG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V EP FV+ ++ +++IVG +E L++ L+ IN LF Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNIN-----LFI 276 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 DA C VKIR P V+ D + + G+ASGQ VFY D + Sbjct: 277 DA--KELDCEVKIRYRSKSTPCKVEIYEDKSAKITLKDPVYGLASGQMAVFYDHD----K 330 Query: 377 VLGGGII 383 V+ G I Sbjct: 331 VIASGFI 337 >gi|330889667|gb|EGH22328.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. mori str. 301020] Length = 366 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 196/371 (52%), Gaps = 26/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 3 RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F Y AG TP P + CNR +KF L LGAD++ Sbjct: 60 KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K VR Sbjct: 120 ATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH+G++ Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMY 232 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 +TIGQR+GLG+ A +P +V+ D +++ +IVG L + EI W+ Sbjct: 233 HTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN- 291 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + K K+R Q P +++ DG F+ + V GQ+ VFY + Sbjct: 292 ---PIDLSSPRKLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI- 347 Query: 374 EARVLGGGIIS 384 LGGG+I Sbjct: 348 ---CLGGGVIE 355 >gi|217033651|ref|ZP_03439079.1| hypothetical protein HP9810_899g87 [Helicobacter pylori 98-10] gi|216943997|gb|EEC23431.1| hypothetical protein HP9810_899g87 [Helicobacter pylori 98-10] Length = 342 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 127/370 (34%), Positives = 202/370 (54%), Gaps = 36/370 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78 M++ V +SGGVDSS A LK G++++G+ L+L+ S K D+Y +A++ Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG Sbjct: 51 ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + + + + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 111 EKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165 Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++ LA +G + +SQ+ICFV++ Y D +K+ + + EG + +L G+I+G Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222 Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G + YTIG+R+G V EP FVV +D + +IVG +E L H + + + D Sbjct: 223 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKD 282 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F++ + F+K R P V D+ + V+FE+ GVA GQA V Y D Sbjct: 283 --FKNG-----EYFIKARYRSVPTKAHVSLRDEAIEVEFEEPFYGVAKGQALVVYKDDI- 334 Query: 374 EARVLGGGII 383 +LGGG+I Sbjct: 335 ---LLGGGVI 341 >gi|120554680|ref|YP_959031.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Marinobacter aquaeolei VT8] gi|205816919|sp|A1U1H5|MNMA_MARAV RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|120324529|gb|ABM18844.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Marinobacter aquaeolei VT8] Length = 392 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 131/383 (34%), Positives = 199/383 (51%), Gaps = 23/383 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 ++P RV+V MSGGVDSSV A LLK GY V G+ ++ ++ ++ C A D+ D Sbjct: 8 QSPAHTRVIVGMSGGVDSSVAAWLLKDQGYQVEGLFMKNWDEDDGTEY---CTAMTDLAD 64 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ V D I + + + + + V F S Y+AG TP P + CN+ VKF L Sbjct: 65 AQAVADAIGIKLHTASFAAEYWDRVFEHFLSEYSAGRTPNPDILCNKEVKFRAFLDYAVT 124 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY R R +DG + + + +D +DQSYFL A + +++ FP+G++ Sbjct: 125 LGADYIATGHYTRQRPL--NDGSGKAQLLKGLDPNKDQSYFLHAVSGERIARTLFPVGEL 182 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E G DK DS ICF+ + K+ D +K+ A G+I +G ++G+ Sbjct: 183 EKPEVRRIAEEQGFVTHDKKDSTGICFIGERKFTDFLKQYLP--AQPGNIETPDGTVIGK 240 Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVY--LDKNSSRVIVGPRESLEVHR-IYLRE 307 H G++ +TIGQR+GLG+ EP +V L +N + G L R + Sbjct: 241 HQGLMYHTIGQRQGLGIGGLAEFGDEPWYVAEKDLKRNVLIAVQGKHHPLLFSRGLVSGP 300 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 ++W+ + F+C K R Q V D GV V F+ ++ V GQ+ VF Sbjct: 301 VDWVAG----EPPAQKFRCKAKTRYRQPDQDCEVTVIDGGVKVVFDDAQRAVTPGQSVVF 356 Query: 368 YTSDSNEARVLGGGIISGSKRSD 390 Y + LGGG+I + R + Sbjct: 357 YQGEV----CLGGGVIEQTWRDN 375 >gi|320156716|ref|YP_004189095.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio vulnificus MO6-24/O] gi|319932028|gb|ADV86892.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio vulnificus MO6-24/O] Length = 374 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 127/375 (33%), Positives = 201/375 (53%), Gaps = 28/375 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + S+ C A +D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNSE---YCTAAEDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 65 KLGIHLHKINFASEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R ++G++ + M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 125 IAMGHYVRRSF--PENGEKPQ-MLRGLDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 181 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A K DS ICF+ + K+ D + R A G+I G++LG+H G++ Sbjct: 182 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGNIESPEGEVLGQHQGLM 239 Query: 261 NYTIGQRRGLGVAMG-------EPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINW 310 +T+GQR+GL + EP FV D + +I L+ + +++W Sbjct: 240 YHTLGQRKGLHIGGRKGGGGNEEPWFVAEKDLKRNVLIAVQGQDHPMLKSEGLIASQLHW 299 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + + D KC VK R Q +P + +D+ + V F++ E+ V GQ+ VFY Sbjct: 300 VE----REPIRDVMKCTVKTRYRQQDIPCTIIPIDDENIKVIFDEPEIAVTPGQSAVFYQ 355 Query: 370 SDSNEARVLGGGIIS 384 D LGGGII Sbjct: 356 GDV----CLGGGIIE 366 >gi|229591246|ref|YP_002873365.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas fluorescens SBW25] gi|259495834|sp|C3JY68|MNMA_PSEFS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|229363112|emb|CAY50124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas fluorescens SBW25] Length = 374 Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 130/381 (34%), Positives = 200/381 (52%), Gaps = 29/381 (7%) Query: 15 DKNPKDM---RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 D P D RV+V MSGGVDSSV A LL GY+V G+ ++ + ++ C A Sbjct: 3 DPAPSDTQKKRVIVGMSGGVDSSVSAVLLMEQGYEVEGLFMKNWEEDDGTE---YCTAMD 59 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DA+ VCD I + + ++ + + V F + Y AG TP P + CNR +KF L Sbjct: 60 DLADAQAVCDKIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLD 119 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP Sbjct: 120 YAMMLGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFP 174 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 +G+++K VR +A + GL A K DS ICF+ + ++ D +K+ A G+I +G+ Sbjct: 175 VGELEKPEVRKIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGEIKTTDGE 232 Query: 252 ILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRI 303 ++GRH+G++ +TIGQR+GLG+ A EP +V+ D +++ +IVG L + Sbjct: 233 VIGRHHGLMYHTIGQRQGLGIGGLKDAGEEPWYVLVKDLDNNVLIVGQGNEHPLLFSGAL 292 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 EI W+ + + K+R Q P +++ G F+ + V GQ Sbjct: 293 LASEIYWVN----PIDLSTPRRLTAKVRYRQGDQPCTLEKTATGYRATFDDPQRAVTPGQ 348 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY + LGGG+I Sbjct: 349 SVVFYDGEI----CLGGGVIE 365 >gi|212696912|ref|ZP_03305040.1| hypothetical protein ANHYDRO_01475 [Anaerococcus hydrogenalis DSM 7454] gi|212676202|gb|EEB35809.1| hypothetical protein ANHYDRO_01475 [Anaerococcus hydrogenalis DSM 7454] Length = 369 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 133/369 (36%), Positives = 204/369 (55%), Gaps = 22/369 (5%) Query: 26 AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85 +SGGVDSSV A LLK +GYDV G+ ++ ++ + G C A D DA +VC+ I + Sbjct: 14 GVSGGVDSSVAALLLKEEGYDVSGIFMKNWDEEDEN---GVCTAEVDYEDAVKVCNQIGI 70 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145 +Y ++E+ + + V F Y G TP P + CN+ +KF L + LGAD LATGH Sbjct: 71 PYYSINFEKEYYDRVFSYFLDEYKKGRTPNPDIMCNKEIKFKAFLDYAKDLGADYLATGH 130 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y R +DG+ + M R +D +DQ+YFL +Q Q+ D+ FP+G++ K+ VR +A+ Sbjct: 131 YARVDR---EDGETK--MLRGIDSNKDQTYFLSQLSQDQIKDVLFPVGNLDKKEVRKIAK 185 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 E L ADK DS ICF+ + + + + N A EG+IV +G ++G+H G++ +TIG Sbjct: 186 ENNLATADKKDSTGICFIGERNFNEFLS--NYLPAKEGNIVDTDGNVMGKHYGLMYHTIG 243 Query: 266 QRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWL-GDGLFEDAV 320 QRRGLG+ GE FV D + +IV E L +R+ ++ + GL ++ Sbjct: 244 QRRGLGIGGEGEAWFVCGKDLEKNELIVCQGKNNEKLFSNRLIGSNLSSISAKGLKKE-- 301 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 F C K R Q + V+ DDG V + ++K++ V GQA VFY + + Sbjct: 302 ---FDCTCKFRYRQKDINSHVKILDDGKVEITYDKTKA-VTPGQAAVFYDGEVCLGSCII 357 Query: 380 GGIISGSKR 388 + +G+KR Sbjct: 358 DEVYNGNKR 366 >gi|284925349|gb|ADC27701.1| tRNA-specific 2-thiouridylase MnmA [Campylobacter jejuni subsp. jejuni IA3902] Length = 338 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 125/367 (34%), Positives = 197/367 (53%), Gaps = 34/367 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++VAMSGGVDS+V A LK G++VIG ++L+ + +++ +V Sbjct: 1 MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVA 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + +++ D +E F+N V +PF +Y G+TP PC CNR +K LL + LG + Sbjct: 53 NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R ++ +D +DQSYFL + ++ L L FPLG+MKKE V Sbjct: 113 LATGHYARL---------ENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163 Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 + A E+ A + +S +ICFV+ Y V+ + + G+++ +G+++G+H G Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQF-MDTKIPGEVLDSSGKVVGKHEG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V EP FV+ ++ +++IVG +E L++ L+ IN LF Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNIN-----LFI 276 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 DA C VKIR P V+ D + + G+ASGQ VFY D + Sbjct: 277 DA--KELVCEVKIRYRSKSTPCKVEIYEDKSAKITLKDPVYGLASGQMAVFYDHD----K 330 Query: 377 VLGGGII 383 V+ G I Sbjct: 331 VIASGFI 337 >gi|188528124|ref|YP_001910811.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori Shi470] gi|229486342|sp|B2UV99|MNMA_HELPS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|188144364|gb|ACD48781.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori Shi470] Length = 342 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 127/370 (34%), Positives = 201/370 (54%), Gaps = 36/370 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78 M++ V +SGGVDSS A LK G++++G+ L+L+ S K D+Y +A++ Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG Sbjct: 51 ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + + + + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 111 EKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165 Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++ LA +G + +SQ+ICFV++ Y D +K+ + + EG + +L G+I+G Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222 Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G + YTIG+R+G V EP FVV +D + +IVG +E L H + + + D Sbjct: 223 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKD 282 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F++ +K R P FV D+ + V+FE+ GVA GQA V Y D Sbjct: 283 --FKNGEYS-----IKARYRSVPTKAFVSLRDEAIEVEFEEPFYGVAKGQALVVYKDDI- 334 Query: 374 EARVLGGGII 383 +LGGG+I Sbjct: 335 ---LLGGGVI 341 >gi|4155868|gb|AAD06840.1| putative TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE [Helicobacter pylori J99] Length = 360 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/384 (33%), Positives = 209/384 (54%), Gaps = 37/384 (9%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 RL ++ ++ K M++ V +SGGVDSS A LK G++++G+ L+L+ S K Sbjct: 6 ARLRAITFNERLK-MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK------ 58 Query: 67 CCAGQDVY--DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 D+Y +A++ C+ + + V D+++ F++AV F ++Y G+TP PC CN + Sbjct: 59 ----HDLYIKNAQKACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLM 114 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 KF L +LG + +ATGHY R + + + + +D +DQSYFL+A + Sbjct: 115 KFGLALDHALKLGCEKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEV 169 Query: 185 LCDLRFPLGDMKKESVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 + L FPLGD+ K+ ++ LA +G + +SQ+ICFV++ Y D +K+ + + Sbjct: 170 IAKLVFPLGDLLKKDIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVE 226 Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLE 299 EG + +L G+++G H G + YTIG+R+G V EP FVV +D + +IVG +E L Sbjct: 227 KEGVVKNLQGEVIGTHKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLA 286 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV 359 H + + + D F+D + F+K R P FV D + V+F++ GV Sbjct: 287 THSLKAKNKSLTKD--FKDG-----EYFIKARYRSVPTKAFVSLKDGMIEVEFKEPFYGV 339 Query: 360 ASGQACVFYTSDSNEARVLGGGII 383 A GQA V Y D +LGGG+I Sbjct: 340 AKGQALVVYKDDI----LLGGGVI 359 >gi|213970042|ref|ZP_03398174.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas syringae pv. tomato T1] gi|213925146|gb|EEB58709.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas syringae pv. tomato T1] Length = 376 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 128/375 (34%), Positives = 197/375 (52%), Gaps = 26/375 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N + RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA Sbjct: 8 NSEMKRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADA 64 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + VCD I + + ++ + + V F Y AG TP P + CNR +KF L L Sbjct: 65 QAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALML 124 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++ Sbjct: 125 GADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELE 179 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A + GL A K DS ICF+ + ++ D +++ A GDI G+++GRH Sbjct: 180 KPQVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGDIKTTEGEVIGRH 237 Query: 257 NGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 +G++ +TIGQR+GLG+ A +P +V+ D +++ +IVG L + EI Sbjct: 238 SGLMYHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEI 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + K K+R Q P +++ G F+ + V GQ+ VFY Sbjct: 298 YWVN----PIDLSSPRKLTAKVRYRQSDQPCMLEKTAGGYRATFDDPQRAVTPGQSVVFY 353 Query: 369 TSDSNEARVLGGGII 383 + LGGG+I Sbjct: 354 DGEI----CLGGGVI 364 >gi|330828858|ref|YP_004391810.1| putative tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Aeromonas veronii B565] gi|328803994|gb|AEB49193.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Aeromonas veronii B565] Length = 368 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 124/373 (33%), Positives = 201/373 (53%), Gaps = 27/373 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 ++V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A QD+ DA+ VC Sbjct: 7 IKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDTDE---YCSAAQDLADAKAVC 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGAD 139 D + + + ++ + + V F Y AG TP P + CN+ +KF L +LGA Sbjct: 64 DKLGMKLHTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEELGAT 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R DD R + R +D +DQSYFL+ +++Q+ FP+GD++K Sbjct: 124 YIATGHYVRR-----DDSTGRPRLLRGLDTNKDQSYFLYTLSEKQVGQSLFPVGDLEKPE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++ L A K DS ICF+ + K+ D + + A G I ++G+++G H G+ Sbjct: 179 VRRIAEQLDLITAKKKDSTGICFIGERKFKDFLAKFLP--AQPGKIETVDGKVIGEHQGL 236 Query: 260 INYTIGQRRGLGV-----AMGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 + +T+GQR+GLG+ A E +VV +++N V G L + +++W+ Sbjct: 237 MYHTLGQRKGLGIGGRKDATEEAWYVVDKEVERNVLVVAQGEHPRLYSDGLIASQLHWVD 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 + + +C VK R Q +P +Q +D+ + V F++ + V GQ+ VFY + Sbjct: 297 ----RTPIREPRRCTVKTRYRQQDIPCLIQPIDDETIRVIFDEKQAAVTPGQSAVFYDGE 352 Query: 372 SNEARVLGGGIIS 384 LGGGII Sbjct: 353 V----CLGGGIIE 361 >gi|117617943|ref|YP_855954.1| tRNA-specific 2-thiouridylase MnmA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166234841|sp|A0KI53|MNMA_AERHH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|117559350|gb|ABK36298.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 368 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 124/373 (33%), Positives = 201/373 (53%), Gaps = 27/373 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 ++V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A QD+ DA+ VC Sbjct: 7 IKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDTDE---YCSAAQDLADAKAVC 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGAD 139 D + + + ++ + + V F Y AG TP P + CN+ +KF L +LGA Sbjct: 64 DKLGMKLHTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEELGAT 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R DD R + R +D +DQSYFL+ ++ Q+ FP+GD++K Sbjct: 124 YIATGHYVRR-----DDSTGRPRLLRGLDTNKDQSYFLYTLSEAQVGQSLFPVGDLEKPE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++ L A K DS ICF+ + K+ D + + A G I ++G+++G H G+ Sbjct: 179 VRRIAEQLDLITAKKKDSTGICFIGERKFKDFLAKFLP--AQPGPIETVDGKVIGEHQGL 236 Query: 260 INYTIGQRRGLGV-----AMGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 + +T+GQR+GLG+ A E +VV +++N+ V G L + +++W+ Sbjct: 237 MYHTLGQRKGLGIGGRKDATEEAWYVVDKEVERNTLVVAQGEHPRLYSDGLIASQLHWVD 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 + +C VK R Q+ +P +Q +D+ + V F++ + V GQ+ VFY + Sbjct: 297 ----RTPIRAPRRCTVKTRYRQEDIPCLIQPIDDETIRVIFDEKQAAVTPGQSAVFYDGE 352 Query: 372 SNEARVLGGGIIS 384 LGGGII Sbjct: 353 V----CLGGGIIE 361 >gi|313498097|gb|ADR59463.1| MnmA [Pseudomonas putida BIRD-1] Length = 374 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 130/380 (34%), Positives = 204/380 (53%), Gaps = 26/380 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+P RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ D Sbjct: 7 KDPAKTRVIVGMSGGVDSSVSALLLIEQGYQVEGLFMKNWEEDDGTE---YCTAREDLAD 63 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ VCD I + + ++ + + V F Y AG TP P + CNR +KF L Sbjct: 64 AQAVCDRIGIKLHTANFAAEYWDNVFEHFLDEYKAGRTPNPDILCNREIKFKAFLDYALS 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD++ATGHY+R R D G ++ + +D +DQSYFL A +++ FP+G++ Sbjct: 124 LGADLIATGHYVRRR----DTGTLTELL-KGLDPNKDQSYFLHAVGGKEIARTLFPVGEL 178 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + GL A K DS ICF+ + ++ D +K+ A GDI G+++GR Sbjct: 179 EKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGDIETTEGEVIGR 236 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 H+G++ +TIGQR+GLG+ A EP +V++ D + ++VG + E ++ R + Sbjct: 237 HHGLMYHTIGQRQGLGIGGLKDASDEPWYVLHKDLARNVLVVG--QGNEHPWLFSRAL-- 292 Query: 311 LGDGLFEDAVVD---GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 L +F VD + K+R Q ++R G F++ + V GQ+ VF Sbjct: 293 LASEIFWVNPVDLGSPRQLTAKVRYRQSDQRCTLERTASGYRAVFDEPQRAVTPGQSVVF 352 Query: 368 YTSDSNEARVLGGGIISGSK 387 Y + LGGG+I ++ Sbjct: 353 YDGEV----CLGGGVIEAAE 368 >gi|91203955|emb|CAJ71608.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 336 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 121/342 (35%), Positives = 182/342 (53%), Gaps = 16/342 (4%) Query: 44 GYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIV 102 GY+V+G+ ++L A + CC+ +D DAR V + + + +V +++E F + +I Sbjct: 5 GYEVVGLFMRLGLEKLDAMTKTKVCCSLEDANDARTVAEQLGIQFHVLNFKEAF-DHIID 63 Query: 103 PFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRI 162 F + Y G TP PC+ CN+ +KF LL+ + L AD +ATGHY + + R + Sbjct: 64 HFCTEYLNGRTPNPCIMCNQELKFGKLLNFAKMLNADFVATGHYAKVEKH-----NDRFL 118 Query: 163 MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICF 222 + + DL ++QSY LF+ Q+QL FPLG + KESVR +A+++ L DK +SQDICF Sbjct: 119 LKKGDDLNKEQSYVLFSLNQEQLSKTLFPLGTLTKESVRRIAKDLNLKTKDKPESQDICF 178 Query: 223 VQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVY 282 V Y ++ + G I G ILG H G +TIGQR+GLGVA G P +VV Sbjct: 179 VLDNNYHSLLYERYGNHIIPGPIKDRQGNILGEHQGAPFFTIGQRKGLGVAFGSPRYVVD 238 Query: 283 LDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ 342 ++ + VI+G + LE + +NW+ E + + KIR P V Sbjct: 239 INPRENAVIIGTDKDLEETGLIASSLNWISVQQLELPM----EVQAKIRYHHMPAHATVS 294 Query: 343 R-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 D V V F + + + GQA VFY +D+ V+GGG I Sbjct: 295 PFGTDKVRVHFNEPQKAITPGQAVVFYDNDT----VVGGGWI 332 >gi|254779876|ref|YP_003057982.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori B38] gi|254001788|emb|CAX30019.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori B38] Length = 342 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 126/370 (34%), Positives = 203/370 (54%), Gaps = 36/370 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78 M++ V +SGGVDSS A LK G++++G+ L+L+ S K D+Y +A++ Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + V D+++ F++AV F ++Y G+TP PC CN +KF L QLG Sbjct: 51 ACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALQLGC 110 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + + + + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 111 EKIATGHYARVK-----EIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165 Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++ LA +G + +SQ+ICFV++ Y D +K+ + + EG + +L G+I+G Sbjct: 166 DIKPLALSAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222 Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G + YTIG+R+G + EP FVV +D + +IVG +E L H + + + + D Sbjct: 223 THKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLMKD 282 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F+D + F+K R P V D+ + V+F++ GVA GQA V Y D Sbjct: 283 --FKDG-----EYFIKARYRSVPAKAHVSLRDEVIEVEFKEPFYGVAKGQALVVYQDDI- 334 Query: 374 EARVLGGGII 383 +LGGG+I Sbjct: 335 ---LLGGGVI 341 >gi|320008432|gb|ADW03282.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces flavogriseus ATCC 33331] Length = 377 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 142/381 (37%), Positives = 200/381 (52%), Gaps = 25/381 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDA 76 + +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G+ CC +D DA Sbjct: 7 RPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDA 65 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL L Sbjct: 66 RRAADVIGIPFYVWDLAERFREDVVDDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALAL 125 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194 G D + TGHY + + + DDG R M R D+ +DQSY L ++QL FPLGD Sbjct: 126 GFDAVCTGHY--ATVVLKDDGTRE--MHRASDMAKDQSYVLGVLDEKQLAHAMFPLGDTL 181 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 K+ +R A GL +A K DS DICF+ G + G A EGDI+ +G +G Sbjct: 182 TTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLAGRLGGPA-EGDILDESGAKVG 240 Query: 255 RHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 H G +TIGQR+GL + G+P +V+ + ++ V VGP E+L+V + + W Sbjct: 241 THEGAFGFTIGQRKGLRIGHPAPDGKPRYVLDISPVNNTVTVGPVEALDVTALTAIKPRW 300 Query: 311 LGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 G G + ++R+ V + D ++V F + GVA GQA V Y Sbjct: 301 CG------TAPSGPGTYTAQLRAHGGETEVTAELTDGTLHVTFTEPVRGVAPGQAVVLY- 353 Query: 370 SDSNEARVLGGGIISGSKRSD 390 + RV+G I+ + R + Sbjct: 354 ---DGTRVVGSATIATTVRRE 371 >gi|301381398|ref|ZP_07229816.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. tomato Max13] gi|302058396|ref|ZP_07249937.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. tomato K40] gi|302130355|ref|ZP_07256345.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 366 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 195/371 (52%), Gaps = 26/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 3 RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F Y AG TP P + CNR +KF L LGAD++ Sbjct: 60 RIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K VR Sbjct: 120 ATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPQVR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + GL A K DS ICF+ + ++ D +++ A GDI G+++GRH+G++ Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGDIKTTEGEVIGRHSGLMY 232 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 +TIGQR+GLG+ A +P +V+ D +++ +IVG L + EI W+ Sbjct: 233 HTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN- 291 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + K K+R Q P +++ G F+ + V GQ+ VFY + Sbjct: 292 ---PIDLSSPRKLTAKVRYRQSDQPCMLEKTAGGYRATFDDPQRAVTPGQSVVFYDGEI- 347 Query: 374 EARVLGGGIIS 384 LGGG+I Sbjct: 348 ---CLGGGVIE 355 >gi|300783583|ref|YP_003763874.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Amycolatopsis mediterranei U32] gi|299793097|gb|ADJ43472.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Amycolatopsis mediterranei U32] Length = 363 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 150/377 (39%), Positives = 197/377 (52%), Gaps = 24/377 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV+GV L L +++ + R GS CC +D +DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVDAGHDVVGVHLAL-SAKPGTLRTGSRGCCTIEDSHDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + Y++D+ ERF V+ F YAAG TP PCV CN +KF LL LG Sbjct: 60 AADILGIPFYIWDFAERFTEEVVETFVGEYAAGRTPNPCVTCNEKIKFEALLEKAMALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY +RL V D R R D +DQSY L + T QL FPLGD K Sbjct: 120 DAVATGHY--ARLTVVDGVPELR---RSADSGKDQSYVLASLTPDQLSHAMFPLGDSWKT 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHL-NGQILGRH 256 VR A GL +A+K DS DICF+ G D K + + G++V G +LGRH Sbjct: 175 DVRAEAERRGLSVANKPDSHDICFIPDG---DTKKFLENRLGQRPGELVDAETGAVLGRH 231 Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL- 311 G+ +T+GQR+GLG+ G P +V+ L+ S V VG L V I W Sbjct: 232 TGVHGFTVGQRKGLGIDAPAPDGRPRYVLSLEPVSGSVKVGSVADLGVKVIEADRATWPS 291 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 G L E +C V++R+ V +DD + V + GVA GQ V Y D Sbjct: 292 GRPLTEPT-----ECVVQVRAHGGIVDAVADVDDDTMTVHLREPLRGVAPGQVVVLYRPD 346 Query: 372 SNEAR-VLGGGIISGSK 387 + VLG ISG++ Sbjct: 347 PGDGDVVLGSAKISGTR 363 >gi|158312934|ref|YP_001505442.1| tRNA-specific 2-thiouridylase MnmA [Frankia sp. EAN1pec] gi|205816861|sp|A8L536|MNMA_FRASN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|158108339|gb|ABW10536.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Frankia sp. EAN1pec] Length = 355 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 150/371 (40%), Positives = 195/371 (52%), Gaps = 32/371 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV GV L L S AS R G+ CC +D DARR Sbjct: 4 MRVLAAMSGGVDSAVAAARAVDAGHDVTGVHLALSRS-PASDRVGARGCCTLEDARDARR 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D ERF VI F + Y+AG TP PCV CN +KF+ +L LG Sbjct: 63 AADVLGIPFYVWDLAERFETEVIDEFVADYSAGRTPNPCVRCNERIKFAAVLEKALALGF 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGH+ R + +DG RR +D +DQSY L +QL RFPLGD K Sbjct: 123 DAVVTGHHAR----LDEDGTLRRS----VDPAKDQSYVLGTLRPEQLAAARFPLGDSTKA 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHL-NGQILGRH 256 VR+ A GL +ADK DS DICFV G ++ R+ G +V G+ LG H Sbjct: 175 QVREEAARRGLAVADKPDSHDICFVASGDTGAWLRERLG---PRPGPVVDAETGETLGEH 231 Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G +T+GQRRGLG+ G P +V+ + +S V VGP +L++ + I W Sbjct: 232 DGAYAFTVGQRRGLGLGRPAPDGRPRYVLEISPATSTVTVGPSSALDMRSLVAERIVWPH 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 DG C ++R+ VP V D + V + G A+GQA VFY D Sbjct: 292 DGP--------VSCTAQVRAHGGVVPAVVTARGDELDVRLAEPVRGTAAGQAVVFYDGD- 342 Query: 373 NEARVLGGGII 383 RVLGGG I Sbjct: 343 ---RVLGGGRI 350 >gi|212712841|ref|ZP_03320969.1| hypothetical protein PROVALCAL_03938 [Providencia alcalifaciens DSM 30120] gi|212684533|gb|EEB44061.1| hypothetical protein PROVALCAL_03938 [Providencia alcalifaciens DSM 30120] Length = 385 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/377 (34%), Positives = 205/377 (54%), Gaps = 32/377 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 ++V+V MSGGVDSSV A LL++ GY VIG+ ++ + + C A D+ DA+ VC Sbjct: 25 IKVIVGMSGGVDSSVSAYLLQQQGYQVIGLFMKNWEEDDDEEY---CSAATDLADAQAVC 81 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139 D + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 82 DKLGIELRTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 141 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R R DGK + + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 142 YIATGHYVRRR---DVDGKSQ--LLRGLDNNKDQSYFLYTLSHEQVAKSLFPVGELEKPE 196 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E+GL A K DS ICF+ + K+ D + R A G IV ++G+I+G+H G+ Sbjct: 197 VRRIAEEIGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVTVDGEIIGQHEGL 254 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREIN 309 + +T+GQR+GLG+ EP +VV D ++++IV PR L + ++++ Sbjct: 255 MYHTLGQRKGLGIGGTKEGSEEPWYVVDKDVENNQLIVAQGHEHPR--LMSVGLIAQQLD 312 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368 W+ + + +C VK R Q +P + + + + V F+ V GQ+ VFY Sbjct: 313 WVD----RQPLTEPLRCVVKTRYRQADIPCTITPLSAEKIQVIFDYPVAAVTPGQSAVFY 368 Query: 369 TSDSNEARVLGGGIISG 385 + LGGG+I Sbjct: 369 IDEV----CLGGGVIEA 381 >gi|19552461|ref|NP_600463.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium glutamicum ATCC 13032] gi|62390127|ref|YP_225529.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium glutamicum ATCC 13032] gi|145295379|ref|YP_001138200.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium glutamicum R] gi|24638303|sp|Q8NR24|MNMA_CORGL RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|166234850|sp|A4QDK1|MNMA_CORGB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|21324007|dbj|BAB98633.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Corynebacterium glutamicum ATCC 13032] gi|41325463|emb|CAF19943.1| TRNA-METHYLTRANSFERASE [Corynebacterium glutamicum ATCC 13032] gi|140845299|dbj|BAF54298.1| hypothetical protein [Corynebacterium glutamicum R] Length = 365 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 138/371 (37%), Positives = 199/371 (53%), Gaps = 19/371 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRV 79 MRV+ AMSGGVDS+V A+ G++V+GV L L + + CC+ +D DARRV Sbjct: 1 MRVLAAMSGGVDSAVAASRAVAAGHEVVGVHLALSQDPQTVRESSRGCCSLEDSADARRV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + + YV+D+ +RF+ VI F SYA GETP PC+ CN +KF+ LL LG D Sbjct: 61 CDKLGIPFYVWDFSDRFKEDVIDNFIDSYAIGETPNPCLRCNEKIKFAALLERGIALGFD 120 Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + TGHY R ++ G DG R R +D +DQSY L ++ FP+GD K Sbjct: 121 AVVTGHYARLTQPADGGDGYLR----RGVDPNKDQSYVLGVLGAHEIEHCMFPVGDTIKP 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R+ A G +A K DS DICF+ G + + + G+ G IV G L H G Sbjct: 177 EIREEASAAGFSVAKKPDSYDICFIPDGNTQAFLGK-HIGMR-PGMIVDQEGTQLREHAG 234 Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 + +TIGQR+GL + A G P +V +D + V VG RE+L++ I+ + +L Sbjct: 235 VHEFTIGQRKGLDIKAPAADGRPRYVTDIDAKTGTVTVGTRENLKISTIHADRLKFLHPA 294 Query: 315 LFEDAVVDGFKCFVKIRSSQDPV--PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + D +D C V++R+ V + R+ D + ++ + GVA GQA V Y D+ Sbjct: 295 M--DGQID---CEVQVRAHGGVVSCSATIDRDADFMVLNLNEPLQGVARGQAAVLYLPDA 349 Query: 373 NEARVLGGGII 383 + VLG G I Sbjct: 350 DGDIVLGSGTI 360 >gi|229019618|ref|ZP_04176430.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH1273] gi|228741666|gb|EEL91854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH1273] Length = 376 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 139/377 (36%), Positives = 199/377 (52%), Gaps = 27/377 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 6 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R DG+ + M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A GL A K DS ICF+ + + D + N A G + L+G++ Sbjct: 178 ELKKPQIREMATAAGLATAAKKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307 G+H+G++ YTIGQR GLG+ G+P F V KN I+ + +Y E Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATN 293 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 + W+ + E FKC K R Q V VQ D+ V + ++ + GQA V Sbjct: 294 VGWVSNKAKETE----FKCTAKFRYRQADNKVTVQIVDENTVRILCDEPIRAITPGQAVV 349 Query: 367 FYTSDSNEARVLGGGII 383 FY D LGG I Sbjct: 350 FYDGD----ECLGGATI 362 >gi|217032089|ref|ZP_03437589.1| hypothetical protein HPB128_16g49 [Helicobacter pylori B128] gi|216946237|gb|EEC24845.1| hypothetical protein HPB128_16g49 [Helicobacter pylori B128] Length = 342 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 126/370 (34%), Positives = 203/370 (54%), Gaps = 36/370 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78 M++ V +SGGVDSS A LK G++++G+ L+L+ S K D+Y +A++ Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + V D+++ F+NAV F S+Y G+TP PC CN +KF L QLG Sbjct: 51 ACEFLGIPLEVLDFQKDFKNAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALQLGC 110 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + + + + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 111 EKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165 Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++ LA +G + +SQ+ICFV++ Y D +K+ + + EG + +L G+I+G Sbjct: 166 DIKPLALSAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLKGEIIG 222 Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G + YTIG+R+G + EP FVV +D + ++VG +E L + + + + + D Sbjct: 223 THKGYMQYTIGKRKGFNIKGALEPHFVVGIDAKKNELVVGKKEDLAMRFLKAKNKSLMKD 282 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F+ + F+K R P FV D+ + V+F++ GVA GQA V Y D Sbjct: 283 --FKSG-----EYFIKARYRSVPAKAFVSLKDEVIEVEFKEPFYGVAKGQALVVYKDDI- 334 Query: 374 EARVLGGGII 383 +LGGG+I Sbjct: 335 ---LLGGGVI 341 >gi|221134862|ref|ZP_03561165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Glaciecola sp. HTCC2999] Length = 372 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 133/384 (34%), Positives = 202/384 (52%), Gaps = 32/384 (8%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P D +V+V MSGGVDSSV A LLK+ G+ V GV ++ + + C A +D+ DA Sbjct: 9 PADTKVIVGMSGGVDSSVSAYLLKQQGFQVEGVFMKNWEEDDNDEY---CAAAEDLADAH 65 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-L 136 V D + ++ + ++ + + V F + Y AG TP P + CN+ +KF L + L Sbjct: 66 AVADKLGITLHSINFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEYAAEDL 125 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY+ SR GD + M R D +DQSYFL+ + + + FP+G ++ Sbjct: 126 GADYIATGHYV-SRAKNGDKWE----MLRGFDQNKDQSYFLYTLSHEHIAKTLFPIGHLE 180 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K +VR++A GL DK DS ICF+ + K+ D + + A GDI G+ +G H Sbjct: 181 KPTVREIAEAQGLVTHDKKDSTGICFIGERKFTDFLSQYLP--AQPGDIYTFEGEKIGEH 238 Query: 257 NGIINYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLR 306 G++ +T+GQR+GL + EP +VV D ++R+IVG PR L + + + Sbjct: 239 QGLMYHTLGQRKGLLIGGTRDHGDEPWYVVDKDMTNNRLIVGQGANHPR--LYSNGLIAK 296 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365 +++W+ A+ + + VK R Q + V +DD V V F+ + V GQ+ Sbjct: 297 QLDWVS----RTALTEPTRMTVKTRYRQADIDCIVTPIDDDSVEVIFDTPQKAVTPGQSA 352 Query: 366 VFYTSDSNEARVLGGGIISGSKRS 389 VFY LGGGII RS Sbjct: 353 VFYQG----PVCLGGGIIESYIRS 372 >gi|57237061|ref|YP_178073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni RM1221] gi|86149727|ref|ZP_01067957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni CF93-6] gi|86151459|ref|ZP_01069674.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni 260.94] gi|86154052|ref|ZP_01072253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597704|ref|ZP_01100937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni 84-25] gi|148926860|ref|ZP_01810538.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni CG8486] gi|205356437|ref|ZP_03223201.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni CG8421] gi|218561738|ref|YP_002343517.1| tRNA-specific 2-thiouridylase MnmA [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|14195288|sp|Q9PJ66|MNMA_CAMJE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71658012|sp|Q5HXB2|MNMA_CAMJR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|57165865|gb|AAW34644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni RM1221] gi|85839995|gb|EAQ57254.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni CF93-6] gi|85841806|gb|EAQ59053.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni 260.94] gi|85842466|gb|EAQ59680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni HB93-13] gi|88190008|gb|EAQ93984.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni 84-25] gi|112359444|emb|CAL34227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145844437|gb|EDK21545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni CG8486] gi|205345624|gb|EDZ32263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni CG8421] gi|315057493|gb|ADT71822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni S3] gi|315929157|gb|EFV08382.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni 305] Length = 338 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 125/368 (33%), Positives = 197/368 (53%), Gaps = 34/368 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++VAMSGGVDS+V A LK G++VIG ++L+ + +++ +V Sbjct: 1 MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVA 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + +++ D +E F+N V +PF +Y G+TP PC CNR +K LL + LG + Sbjct: 53 NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R ++ +D +DQSYFL + ++ L L FPLG+MKKE V Sbjct: 113 LATGHYARL---------ENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163 Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 + A E+ A + +S +ICFV+ Y V+ + + G+++ +G+++G+H G Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQF-MDTKIPGEVLDSSGKVVGKHEG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V EP FV+ ++ +++IVG +E L++ L+ IN LF Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNIN-----LFI 276 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 DA C VKIR P V+ D + + G+ASGQ VFY D + Sbjct: 277 DA--KELDCEVKIRYRSKSTPCKVEIYEDKSAKIILKDPVYGLASGQMAVFYDHD----K 330 Query: 377 VLGGGIIS 384 V+ G I Sbjct: 331 VIASGFIE 338 >gi|296272288|ref|YP_003654919.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Arcobacter nitrofigilis DSM 7299] gi|296096463|gb|ADG92413.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Arcobacter nitrofigilis DSM 7299] Length = 376 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 135/378 (35%), Positives = 201/378 (53%), Gaps = 34/378 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ-DVYDARRVC 80 +VVV MSGGVDSSV A LLK+ GYDVIG+ ++ + KGS C + + DA++V Sbjct: 14 KVVVGMSGGVDSSVTALLLKQQGYDVIGLFMRNWEY----GIKGSQCPNRIEFEDAKKVG 69 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + I + D+ E +R V F G TP P + CNR +KF+ L+ +++GADV Sbjct: 70 ELIGIEVLGKDFVEEYRTKVFDVFLEGLKKGLTPNPDILCNREIKFNVFLNEAKKMGADV 129 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + Y K ++ P D +DQSYFL A + +QL FPLGD+ K+ V Sbjct: 130 IATGHYAKIAKY-----KDHYVLDTPKDSSKDQSYFLHALSSEQLSHAMFPLGDLTKKEV 184 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++AR L ++DK DS ICF+ ++ + + + A+ GDIV NG++LGRH G+I Sbjct: 185 REIARLHNLPVSDKKDSTGICFIGNQRFDEFITQHLK--AIPGDIVDENGKVLGRHKGLI 242 Query: 261 NYTIGQRRGLGVA----------MGEPLFVVY--LDKNSSRVIVGPRESLEVHR-IYLRE 307 YT+GQR+G+G+ + P + ++ N+ V+ L +++ + Sbjct: 243 CYTLGQRKGIGLGGIKETETANHIHNPWYAAKKNMEDNTLTVVQDTNHPLLMNQSVEASH 302 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366 ++W + E+A G K +IR Q V D V V F+K + V GQ+ V Sbjct: 303 MHW----VLEEAPKVGDKLMAQIRYRQQKQACTVTEVTGDKVLVQFDKPQRAVTLGQSLV 358 Query: 367 FYTSDSNEARVLGGGIIS 384 Y D LGGG IS Sbjct: 359 LYEGD----YCLGGGFIS 372 >gi|153875033|ref|ZP_02003007.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Beggiatoa sp. PS] gi|152068503|gb|EDN66993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Beggiatoa sp. PS] Length = 359 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 127/372 (34%), Positives = 196/372 (52%), Gaps = 27/372 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+V+V MSGGVDSSV A LLK+ GY+V G+ ++ + + + C A +DV DA+ VC Sbjct: 1 MKVIVGMSGGVDSSVAALLLKKQGYEVQGLFMKNW---EEDDTENYCSAAEDVRDAQAVC 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 DT+ + + ++ + + V Y AG TP P + CNR +KF L LG Sbjct: 58 DTLEIPLHTVNFATEYWDNVFTHCLQEYQAGRTPNPDILCNREIKFKVFLEHALHLGGKA 117 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R +G + +++ + D +DQSYFL+ Q QL FP+G+++K V Sbjct: 118 IATGHYVR----LGKNNAHYQLL-KGHDPNKDQSYFLYTLGQSQLAHSLFPIGELQKTQV 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R LA + GL K DS ICF+ + + + R G + G++LG+H+G++ Sbjct: 173 RQLAEQAGLATYAKKDSTGICFIGERPFKAFLSRFLP--TQPGPMETPEGEVLGQHDGLM 230 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312 YT+GQR+GL + GEP +VV D ++R+IVG + L + ++++W+ Sbjct: 231 YYTLGQRQGLNIGGQVGGSGEPWYVVAKDMPNNRLIVGQGHNHPLLFCDGLKAQQLHWI- 289 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 G+ A F C K R Q P V +++ V F + + V GQ+ VFY +D Sbjct: 290 SGI---APSLPFSCSAKTRYRQTEQPCVITALDNETCEVHFNQPQRAVTPGQSVVFYQND 346 Query: 372 SNEARVLGGGII 383 LGG II Sbjct: 347 ----ECLGGAII 354 >gi|329568350|gb|EGG50159.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX1467] Length = 374 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 141/371 (38%), Positives = 199/371 (53%), Gaps = 26/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D +V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y G TP P V CN+ +KF L QLGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R +D +DQ+YFL +Q QL FPLG M+K VR Sbjct: 125 ATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS +CF+ + + + + N A +G++V +G+I G+H+G++ Sbjct: 181 AIAERAGLATAKKKDSTGVCFIGEKNFKEFLS--NYLPAKKGNMVTEDGEIKGQHDGLMY 238 Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314 YTIGQR+GLG+ G EP FV+ D + V+VG E L + E+++ D Sbjct: 239 YTIGQRQGLGIGGGGKTQEPWFVIGKDLTTYNVLVGQGFHHEKLYATHLEASEVHFTVD- 297 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV--YVDFEKSEVGVASGQACVFYTSDS 372 + F C K R Q +PV V ++DG V F++ V GQA VFY Sbjct: 298 ---TPMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFY---- 350 Query: 373 NEARVLGGGII 383 + LGGG+I Sbjct: 351 DGMECLGGGLI 361 >gi|28870522|ref|NP_793141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas syringae pv. tomato str. DC3000] gi|37999578|sp|Q87ZR6|MNMA_PSESM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|28853770|gb|AAO56836.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas syringae pv. tomato str. DC3000] Length = 376 Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 128/375 (34%), Positives = 197/375 (52%), Gaps = 26/375 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N + RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA Sbjct: 8 NSEMKRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADA 64 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + VCD I + + ++ + + V F Y AG TP P + CNR +KF L L Sbjct: 65 QAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALML 124 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++ Sbjct: 125 GADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELE 179 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A + GL A K DS ICF+ + ++ D +++ A GDI G+++GRH Sbjct: 180 KPQVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGDIKTTEGEVIGRH 237 Query: 257 NGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 +G++ +TIGQR+GLG+ A +P +V+ D +++ +IVG L + EI Sbjct: 238 SGLMYHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEI 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + K K+R Q P +++ G F+ + V GQ+ VFY Sbjct: 298 YWVN----PIDLSSPRKLTAKVRYRQSDQPCTLEKTAGGYRATFDDPQRAVTPGQSVVFY 353 Query: 369 TSDSNEARVLGGGII 383 + LGGG+I Sbjct: 354 DGEI----CLGGGVI 364 >gi|298735640|ref|YP_003728165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori B8] gi|298354829|emb|CBI65701.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori B8] Length = 360 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 129/384 (33%), Positives = 210/384 (54%), Gaps = 37/384 (9%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 RL ++ ++ K M++ V +SGGVDSS A LK G++++G+ L+L+ S K Sbjct: 6 ARLRAITHNERLK-MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK------ 58 Query: 67 CCAGQDVY--DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 D+Y +A++ C+ + + V D+++ F+NAV F S+Y G+TP PC CN + Sbjct: 59 ----HDLYIKNAQKACEFLGIPLEVLDFQKDFKNAVYDEFISAYEEGQTPNPCALCNPLM 114 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 KF L QLG + +ATGHY R + + + + +D +DQSYFL+A + Sbjct: 115 KFGLALDHALQLGCEKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEV 169 Query: 185 LCDLRFPLGDMKKESVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 + L FPLGD+ K+ ++ LA +G + +SQ+ICFV++ Y D +K+ + + Sbjct: 170 IAKLVFPLGDLLKKDIKPLALSAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVE 226 Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLE 299 EG + +L G+I+G H G + YTIG+R+G + EP FVV +D + ++VG +E L Sbjct: 227 KEGVVKNLKGEIIGTHKGYMQYTIGKRKGFNIKGALEPHFVVGIDAKKNELVVGKKEDLA 286 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV 359 + + + + + D F+ + F+K R P FV D+ + V+F++ GV Sbjct: 287 MRFLKAKNKSLMKD--FKSG-----EYFIKARYRSVPAKAFVSLKDEVIEVEFKEPFYGV 339 Query: 360 ASGQACVFYTSDSNEARVLGGGII 383 A GQA V Y D +LGGG+I Sbjct: 340 AKGQALVVYKDDI----LLGGGVI 359 >gi|330940375|gb|EGH43479.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. pisi str. 1704B] Length = 366 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 126/371 (33%), Positives = 195/371 (52%), Gaps = 26/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 3 RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F Y AG TP P + CNR +KF L LGAD++ Sbjct: 60 KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K VR Sbjct: 120 ATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH+G++ Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMY 232 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 +TIGQR+GLG+ A +P +V+ D +++ +IVG L + EI W+ Sbjct: 233 HTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVNP 292 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + K+R Q P +++ DG F+ + V GQ+ VFY + Sbjct: 293 IDLSSPP----RLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI- 347 Query: 374 EARVLGGGIIS 384 LGGG+I Sbjct: 348 ---CLGGGVIE 355 >gi|147669349|ref|YP_001214167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dehalococcoides sp. BAV1] gi|146270297|gb|ABQ17289.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dehalococcoides sp. BAV1] Length = 361 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 137/362 (37%), Positives = 188/362 (51%), Gaps = 20/362 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V+VAMSGGVDSSV A LL GY+V GV+LQL + ++ G+ + + AR V Sbjct: 12 VMVAMSGGVDSSVTAMLLLEQGYNVAGVSLQL---KSNNEPYGNGYNLKLINRAREVAAA 68 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 +N+ HYV D + F VI F Y+ G TP PC+ CN VK LL+ + AD LA Sbjct: 69 LNIPHYVVDLSDIFSQRVIADFCQQYSQGRTPNPCIRCNYYVKIGALLNKIQDFKADYLA 128 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY +R+ ++G + R D ++DQSYFL+ + L L FPLG K+ + Sbjct: 129 TGHY--ARIVSDENGTH---LLRGADGKKDQSYFLYTLPPESLSRLMFPLGQKYKKDIVR 183 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA M L ++ K +SQD+CF+ G Y + G G I+ G+ILG H G+ Y Sbjct: 184 LATNMKLPVSQK-ESQDVCFIPDGDYKSFLA-TRMGFT-PGKILDTTGKILGEHQGLPLY 240 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 T+GQR+GLG+A E LFV ++ +++ + V + L RI L W G+ +D Sbjct: 241 TVGQRQGLGLASNEKLFVSDMNADANTITVAGHDQLYTSRILLSNFIWRESGI----PLD 296 Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVAS-GQACVFYTSDSNEARVLGGG 381 VK+R P V Y+ S V A+ GQA V Y D VLGGG Sbjct: 297 TSGMIVKVRYKAAPAEVKKISQSGDFYILELASPVWAATPGQAAVIYLDD----MVLGGG 352 Query: 382 II 383 II Sbjct: 353 II 354 >gi|310828741|ref|YP_003961098.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium limosum KIST612] gi|308740475|gb|ADO38135.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium limosum KIST612] Length = 359 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 138/371 (37%), Positives = 196/371 (52%), Gaps = 26/371 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++VV MSGGVDSSV A LLK+ GYDVIGV ++ + + G C A +D D +RVC Sbjct: 1 MKIVVGMSGGVDSSVAALLLKQQGYDVIGVFMKNWEEKDED---GVCTATEDYEDVQRVC 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GAD 139 +TI++ +Y ++ + + V F Y G TP P V CN+ +KF L + G D Sbjct: 58 ETIDIPYYTVNFTREYYDHVFAYFLDEYKKGRTPNPDVLCNKEIKFKRFLDYALGVVGGD 117 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 VLATGHY + ++ +GK R I R D +DQ+YFL Q QL ++ FP+G + K+ Sbjct: 118 VLATGHYAQKDVH---EGKFRLI--RAFDHNKDQTYFLCQLGQHQLENVMFPIGHLDKKE 172 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A + L ADK DS ICF+ + + + + A G+I L+G I G+H G+ Sbjct: 173 VREIAEKNNLITADKKDSTGICFIGERNFTKFLSQYLP--AQPGEIRDLDGNIKGKHEGL 230 Query: 260 INYTIGQRR---GLGVAMGEPLFVVY--LDKNSSRVIVGPRE-SLEVHRIYLREINWLGD 313 + YT+GQRR G GEP FVV L N V+ G + +L + + +W+ Sbjct: 231 MYYTLGQRRGLGIGGQGTGEPWFVVEKDLKDNVLYVVQGEKHPALYSRSLEATDTSWVAG 290 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 +A F C K R Q V V R+D G++VDF+K + V GQ V Y Sbjct: 291 ----EAPAREFSCTAKFRYRQPDQGVHVTVRDDGGLHVDFDKDQKAVTPGQEVVLYDGQV 346 Query: 373 NEARVLGGGII 383 LGG I Sbjct: 347 ----CLGGATI 353 >gi|161353441|ref|NP_223972.2| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori J99] gi|205371768|sp|Q9ZJQ0|MNMA_HELPJ RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 342 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 126/370 (34%), Positives = 202/370 (54%), Gaps = 36/370 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78 M++ V +SGGVDSS A LK G++++G+ L+L+ S K D+Y +A++ Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + V D+++ F++AV F ++Y G+TP PC CN +KF L +LG Sbjct: 51 ACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + + + + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 111 EKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165 Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++ LA +G + +SQ+ICFV++ Y D +K+ + + EG + +L G+++G Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEVIG 222 Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G + YTIG+R+G V EP FVV +D + +IVG +E L H + + + D Sbjct: 223 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKD 282 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F+D + F+K R P FV D + V+F++ GVA GQA V Y D Sbjct: 283 --FKDG-----EYFIKARYRSVPTKAFVSLKDGMIEVEFKEPFYGVAKGQALVVYKDDI- 334 Query: 374 EARVLGGGII 383 +LGGG+I Sbjct: 335 ---LLGGGVI 341 >gi|320323780|gb|EFW79864.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. glycinea str. B076] gi|320327920|gb|EFW83925.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. glycinea str. race 4] Length = 366 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 195/371 (52%), Gaps = 26/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 3 RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F Y AG TP P + CNR +KF L LGAD++ Sbjct: 60 KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K VR Sbjct: 120 ATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH+G++ Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMY 232 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 +TIGQR+GLG+ A +P +V+ D +++ +IVG L + EI W Sbjct: 233 HTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWAN- 291 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + K K+R Q P +++ DG F+ + V GQ+ VFY + Sbjct: 292 ---PIDLSSPRKLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI- 347 Query: 374 EARVLGGGIIS 384 LGGG+I Sbjct: 348 ---CLGGGVIE 355 >gi|269123624|ref|YP_003306201.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Streptobacillus moniliformis DSM 12112] gi|268314950|gb|ACZ01324.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Streptobacillus moniliformis DSM 12112] Length = 359 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 129/370 (34%), Positives = 201/370 (54%), Gaps = 27/370 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVV+ MSGGVDSSV A LLK GY+VIGV ++ + + + G C + D D V + Sbjct: 4 RVVLGMSGGVDSSVAAILLKEAGYEVIGVFMKNWEEKDEN---GVCMSDIDYEDVISVAE 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + +Y ++ + + + V F S Y TP P V CN+ +KF L +LGAD + Sbjct: 61 QLEIPYYSVNFVKEYWDRVFEYFLSEYRLARTPNPDVMCNKEIKFKAFLDYANKLGADYI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +RL + G+ +++ R +D +DQSYFL Q+QL + FP+G+ +K +R Sbjct: 121 ATGHY--ARLTTNEKGE--KVLLRGVDNNKDQSYFLCGLNQKQLEKVLFPIGEYEKTEIR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + L A K DS ICF+ + + + + + A +G+IV +NG ILG H+G++ Sbjct: 177 KIAEKYNLKTAKKKDSTGICFIGERNFNEFLSKYLP--AKDGNIVDINGNILGSHHGLMY 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 YTIGQR+G+G+ GEP FVV ++KN V G L + + N++ + Sbjct: 235 YTIGQRKGIGLGNTKEGTGEPYFVVDKNVEKNELIVAQGDDNLLYSKGLIANKFNFINE- 293 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSN 373 + F+C VK R Q+ V + + ++ Y + F++ + V GQ V Y + Sbjct: 294 -----IELPFRCTVKFRYRQNDVSAVIDKIEEDRYQIIFDEKQRAVTLGQIVVLYDGE-- 346 Query: 374 EARVLGGGII 383 + LGGGII Sbjct: 347 --KCLGGGII 354 >gi|73748589|ref|YP_307828.1| tRNA-specific 2-thiouridylase MnmA [Dehalococcoides sp. CBDB1] gi|289432615|ref|YP_003462488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dehalococcoides sp. GT] gi|123619640|sp|Q3ZXD7|MNMA_DEHSC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205814533|sp|A5FR85|MNMA_DEHSB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|73660305|emb|CAI82912.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dehalococcoides sp. CBDB1] gi|288946335|gb|ADC74032.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dehalococcoides sp. GT] Length = 357 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 137/362 (37%), Positives = 188/362 (51%), Gaps = 20/362 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V+VAMSGGVDSSV A LL GY+V GV+LQL + ++ G+ + + AR V Sbjct: 8 VMVAMSGGVDSSVTAMLLLEQGYNVAGVSLQL---KSNNEPYGNGYNLKLINRAREVAAA 64 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 +N+ HYV D + F VI F Y+ G TP PC+ CN VK LL+ + AD LA Sbjct: 65 LNIPHYVVDLSDIFSQRVIADFCQQYSQGRTPNPCIRCNYYVKIGALLNKIQDFKADYLA 124 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY +R+ ++G + R D ++DQSYFL+ + L L FPLG K+ + Sbjct: 125 TGHY--ARIVSDENGTH---LLRGADGKKDQSYFLYTLPPESLSRLMFPLGQKYKKDIVR 179 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA M L ++ K +SQD+CF+ G Y + G G I+ G+ILG H G+ Y Sbjct: 180 LATNMKLPVSQK-ESQDVCFIPDGDYKSFLA-TRMGFT-PGKILDTTGKILGEHQGLPLY 236 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 T+GQR+GLG+A E LFV ++ +++ + V + L RI L W G+ +D Sbjct: 237 TVGQRQGLGLASNEKLFVSDMNADANTITVAGHDQLYTSRILLSNFIWRESGI----PLD 292 Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVAS-GQACVFYTSDSNEARVLGGG 381 VK+R P V Y+ S V A+ GQA V Y D VLGGG Sbjct: 293 TSGMIVKVRYKAAPAEVKKISQSGDFYILELASPVWAATPGQAAVIYLDD----MVLGGG 348 Query: 382 II 383 II Sbjct: 349 II 350 >gi|256380038|ref|YP_003103698.1| tRNA-specific 2-thiouridylase MnmA [Actinosynnema mirum DSM 43827] gi|255924341|gb|ACU39852.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Actinosynnema mirum DSM 43827] Length = 362 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 137/366 (37%), Positives = 189/366 (51%), Gaps = 33/366 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV GV L L +++ + R GS CC +D +DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVEAGHDVTGVHLAL-SAKPGTLRTGSRGCCTIEDSHDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ ERF V+ F + YAAG TP PC+ CN +KF LL LG Sbjct: 60 AADVLGIPFYVWDFAERFTEDVVEDFVAEYAAGRTPNPCLRCNERIKFEALLDKAIALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGHY +RL V D R R D +DQSY L + T++QL FPLG K Sbjct: 120 DAVCTGHY--ARLDVVDGSVELR---RSADEGKDQSYVLASLTREQLAHAMFPLGGSTKV 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRIN--AGIALEGDIVHLNGQILGR 255 VR A GL +A K DS DICF+ G + KR+ AG+ ++ + G +LG+ Sbjct: 175 EVRAEAARRGLSVAAKPDSHDICFIPDGDTQGFLTKRLGQRAGVLVDDE----TGAVLGQ 230 Query: 256 HNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIY----LRE 307 H G+ +T+GQR+GLG+ G P +V+ L+ S V VG E L V I + Sbjct: 231 HVGVHGFTVGQRKGLGIDAPAPDGRPRYVLSLEPVSGTVRVGAAEKLAVREIVAVRPVSR 290 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 ++W G +C ++R+ P + + + V + GVA GQA Sbjct: 291 VDWSGP----------VECVAQVRAHGGTAPAIAELVGEELVVRLREPLSGVAPGQAVAV 340 Query: 368 YTSDSN 373 Y D Sbjct: 341 YREDPE 346 >gi|325003016|ref|ZP_08124128.1| tRNA-specific 2-thiouridylase MnmA [Pseudonocardia sp. P1] Length = 366 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 144/381 (37%), Positives = 199/381 (52%), Gaps = 29/381 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV+GV L L +R A R GS CC+ +D DA R Sbjct: 1 MRVLAAMSGGVDSAVAAARAVAAGHDVVGVHLALSRTRDA-MRSGSRGCCSKEDSADAAR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + +YV+D E F V+ F ++YAAGETP PC+ CN +KF+ +L LG Sbjct: 60 AADVLGIPYYVWDLSEEFARDVVDDFVAAYAAGETPNPCLRCNEKIKFAAVLDKALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGHY R V + R D ++DQSY L QL FP+GD K Sbjct: 120 DAVCTGHYARLDPAVPS-------LRRSADADKDQSYVLAVLRADQLRHAMFPVGDTPKP 172 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHL-NGQILGRH 256 +R A +GL +A K DS DICF+ G ++ R+ + G++V G +LG H Sbjct: 173 EIRAEAERLGLRVAGKPDSHDICFIPTGDTQGFLRERLG---SQPGELVDAGTGDVLGSH 229 Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G+ +T+GQR+GLG+ A G P +V+ ++ S V VGP +L+V I R W Sbjct: 230 DGVHGFTVGQRKGLGIDRPAADGRPRYVLGIEPVSGTVRVGPESALDVSGITARSPVWTS 289 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ---RND---DGVYVDFEKSEVGVASGQACV 366 G + F C V++R+ P V R D DGV + + GVA GQA Sbjct: 290 GGAPDGP----FGCVVQVRAHGGIAPAEVTPSGRGDDGVDGVEIALAEPLRGVAPGQAVA 345 Query: 367 FYTSDSNEARVLGGGIISGSK 387 FY D + VLG I+ + Sbjct: 346 FYRPDDDGDVVLGSATITATS 366 >gi|297620680|ref|YP_003708817.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Waddlia chondrophila WSU 86-1044] gi|297375981|gb|ADI37811.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Waddlia chondrophila WSU 86-1044] Length = 354 Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 125/366 (34%), Positives = 196/366 (53%), Gaps = 22/366 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV +SGGVDS+V A LLK+ GY VIG+ ++ + + + G C + D D RVCD Sbjct: 5 VVVGLSGGVDSAVAALLLKQQGYSVIGLFMKNWEEKDSD---GQCSSAADYEDVSRVCDL 61 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 +++ +Y ++ + + ++V + G TP P V CNR +KF L ++LG D LA Sbjct: 62 LDIPYYGVNFSQEYWDSVFADCLEEFKKGHTPNPDVLCNREIKFKVLFEKAKELGGDYLA 121 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R+R+Y G+ + + D ++DQSYFL+ L + FP+G + K+ VR+ Sbjct: 122 TGHYCRTRIYEGE-----AQLLKGADPDKDQSYFLYMIKSDILQSVLFPIGSLPKKEVRE 176 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +AR L + K DS ICF+ + + + + + + G+ ++G+ +GRH+G+ Y Sbjct: 177 IARRHNLPVHSKKDSTGICFIGERNFKEFLGQYIS--FAPGEFQTMDGKTVGRHDGVPFY 234 Query: 263 TIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGDGLFED 318 TIGQRRGLG+ G+ FVV D + V V +L +Y E++W+ + Sbjct: 235 TIGQRRGLGIGGAGDAWFVVGKDVEKNIVFVEQGADHPALYATDLYADELSWVSS---KG 291 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARV 377 A F C KIR Q P + ++G+ V+F + + V Q+ VFY D Sbjct: 292 APEKTFVCSSKIRYRQKDKPCRITAIEEGIARVEFPEKQRAVTPRQSIVFYDGDV----C 347 Query: 378 LGGGII 383 LGGG+I Sbjct: 348 LGGGMI 353 >gi|302185016|ref|ZP_07261689.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. syringae 642] gi|330981378|gb|EGH79481.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 366 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 126/371 (33%), Positives = 196/371 (52%), Gaps = 26/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 3 RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F Y AG TP P + CNR +KF L LGAD++ Sbjct: 60 KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K VR Sbjct: 120 ATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH+G++ Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMY 232 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 +TIGQR+GLG+ A +P +V+ D +++ +IVG L + EI W+ Sbjct: 233 HTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN- 291 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + + K+R Q P +++ DG F+ + V GQ+ VFY + Sbjct: 292 ---PIDLSSPRRLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI- 347 Query: 374 EARVLGGGIIS 384 LGGG+I Sbjct: 348 ---CLGGGVIE 355 >gi|27904738|ref|NP_777864.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29428172|sp|P59460|MNMA_BUCBP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|27904135|gb|AAO26969.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 370 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 133/379 (35%), Positives = 200/379 (52%), Gaps = 36/379 (9%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + +V+VAMSGGVDSSV A +LK+ GY V G+ ++ + S C + +D+ DA+ V Sbjct: 5 NKKVIVAMSGGVDSSVTAWILKKKGYHVEGLFMKNWEEHN-SDSDMHCSSKKDLSDAQGV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGA 138 C+ +N+ + ++ + V F Y G TP P V CN+ +KF + Q L A Sbjct: 64 CNQLNIFLHKVNFSFEYWENVFQKFLFEYKMGRTPNPDVLCNKEIKFKIFFEYSIQDLQA 123 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY++ R++ K + + R +D +DQSYFL+ Q+ L FP+G + K Sbjct: 124 HYIATGHYVQKRIF-----KNKYFLLRGLDATKDQSYFLYTINQKVLKQCLFPIGHLTKC 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHN 257 VR +AR + L +A K DS ICF+ ++ K +N + + G+I+ GQ +G+H Sbjct: 179 EVRKIARRINLIVAKKKDSTGICFISPQ---NIKKFLNHYLPHKSGNIITTLGQKIGQHY 235 Query: 258 GIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL------- 305 G+I+YTIGQRRGLG+ P +VV D ++ +IV S ++ YL Sbjct: 236 GLIHYTIGQRRGLGIGGIKGFNNIPWYVVSKDITNNSLIV----SQGMNNFYLMSIGLIA 291 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQA 364 E++W+ D + + F C KIR +P V + V FE+ E VA GQ+ Sbjct: 292 NELHWIND----INIQNSFFCTAKIRYRHIDIPCKIVMHKKKQIKVLFERPESSVAPGQS 347 Query: 365 CVFYTSDSNEARVLGGGII 383 VFY SD LGGGII Sbjct: 348 VVFYLSD----LCLGGGII 362 >gi|312961679|ref|ZP_07776177.1| tRNA-specific 2-thiouridylase [Pseudomonas fluorescens WH6] gi|311283938|gb|EFQ62521.1| tRNA-specific 2-thiouridylase [Pseudomonas fluorescens WH6] Length = 374 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 131/381 (34%), Positives = 199/381 (52%), Gaps = 29/381 (7%) Query: 15 DKNPKDM---RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 D P D RV+V MSGGVDSSV A LL GY+V G+ ++ + ++ C A Sbjct: 3 DPAPSDTQKKRVIVGMSGGVDSSVSAVLLMEQGYEVEGLFMKNWEEDDGTE---YCTAMD 59 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DA+ VCD I + + ++ + + V F + Y AG TP P + CNR +KF L Sbjct: 60 DLADAQAVCDKIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLD 119 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP Sbjct: 120 YAMMLGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFP 174 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 +G+++K VR +A + GL A K DS ICF+ + ++ D +K+ A G+I G+ Sbjct: 175 VGELEKPEVRRIAEQHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGEIKTTEGE 232 Query: 252 ILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRI 303 ++GRH+G++ +TIGQR+GLG+ A EP +V+ D ++ ++VG L + Sbjct: 233 VIGRHHGLMYHTIGQRQGLGIGGLKDAGEEPWYVLVKDLENNVLVVGQGNEHPLLFSGAL 292 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 EI W+ D V + K+R Q P +++ G F+ + V GQ Sbjct: 293 LASEIYWVNP---IDLSVP-RRLTAKVRYRQSDQPCTLEKTASGYRATFDDPQRAVTPGQ 348 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY + LGGG+I Sbjct: 349 SVVFYDGEI----CLGGGVIE 365 >gi|261346011|ref|ZP_05973655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Providencia rustigianii DSM 4541] gi|282565896|gb|EFB71431.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Providencia rustigianii DSM 4541] Length = 373 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 126/377 (33%), Positives = 201/377 (53%), Gaps = 32/377 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 ++V+V MSGGVDSSV A LL++ GY V+G+ ++ + + C A D+ DA+ VC Sbjct: 13 IKVIVGMSGGVDSSVSAYLLQQQGYQVVGLFMKNWEEDDDEEY---CSAATDLADAQAVC 69 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139 D + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 70 DKLGIELRTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 129 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R R D + + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 130 YIATGHYVRRR-----DVNGKSQLLRGLDNNKDQSYFLYTLSHEQIAKSLFPVGELEKPE 184 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E+GL A K DS ICF+ + K+ D + R A G IV ++G+ +G+H G+ Sbjct: 185 VRRIAEEIGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVTVDGETIGQHEGL 242 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREIN 309 + +T+GQR+GLG+ EP +VV D +++IV PR L + ++++ Sbjct: 243 MYHTLGQRKGLGIGGTKEGSEEPWYVVDKDVEKNQLIVAQGHEHPR--LMSVGLIAQQLD 300 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368 W+ + + +C VK R Q +P + + D + V F+ V GQ+ VFY Sbjct: 301 WVD----RQVLTEPLRCVVKTRYRQADIPCTITPLSADKIQVTFDYPVAAVTPGQSAVFY 356 Query: 369 TSDSNEARVLGGGIISG 385 + LGGG+I Sbjct: 357 IDEV----CLGGGVIEA 369 >gi|308177899|ref|YP_003917305.1| tRNA-specific 2-thiouridylase MnmA [Arthrobacter arilaitensis Re117] gi|307745362|emb|CBT76334.1| tRNA-specific 2-thiouridylase MnmA [Arthrobacter arilaitensis Re117] Length = 378 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 143/383 (37%), Positives = 201/383 (52%), Gaps = 25/383 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+V+ AMSGGVDS+V AA G+DV+GV L L + + R GS CC +D DA R Sbjct: 1 MKVLAAMSGGVDSAVAAARAVEAGHDVVGVHLAL-SRMPGTLRTGSRGCCTLEDSNDAWR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 CD + + +YV+D+ +RF V+ F Y AG TP PC+ CN +KF+ LL LG Sbjct: 60 ACDKLGIPYYVWDFSDRFAEDVVQDFVDEYEAGRTPNPCMRCNEKIKFAALLEKALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197 D + TGHY +++ D+G + R D +DQSY L T +QL FPL + K Sbjct: 120 DAVCTGHY--AKVLRDDEGNPE--LHRAADWAKDQSYVLGVLTHEQLEHCMFPLAETPSK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRH 256 VR A GL +A+K DS DICF+ G D + I ++ G+IV G LG H Sbjct: 176 AEVRAEAAARGLTVANKPDSYDICFIPDG---DTRGWLAERIEMKPGEIVDHEGNQLGEH 232 Query: 257 NGIINYTIGQRRGL----GVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G +T+GQR+GL A G+P FV+ + ++VIVGP L V ++ I+W G Sbjct: 233 EGAQAFTVGQRKGLRLGRPAADGKPRFVLEIRPKENKVIVGPEALLAVDQLRGIRISWAG 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-----RNDDGVYVDFEKSEVGVASGQACVF 367 + E + F C V++R+ DPVP + D + V+ + GVA GQ V Sbjct: 293 VPISEVFTGEKFDCMVQVRAHGDPVPAVAHMERSAESHDELVVNLPEGMRGVAPGQTMVV 352 Query: 368 YTSDSNEARVLGGGIISGSKRSD 390 Y +RVLG I ++ S+ Sbjct: 353 YQG----SRVLGQATIDSARSSE 371 >gi|261840049|gb|ACX99814.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori 52] Length = 342 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 127/370 (34%), Positives = 202/370 (54%), Gaps = 36/370 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78 M++ V +SGGVDSS A LK G++++G+ L+L+ S K D+Y +A++ Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG Sbjct: 51 ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + + + + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 111 EKIATGHYARIK-----EIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165 Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++ LA +G + +SQ+ICFV++ Y D +K+ + + EG + +L G+I+G Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222 Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G + YTIG+R+G V EP FVV +D + +IVG +E L H + + + D Sbjct: 223 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKD 282 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F++ + F+K R P V D+ + V+FE+ GVA GQA V Y D Sbjct: 283 --FKNG-----EYFIKARYRSVPTKAHVNLRDEVIEVEFEEPFYGVAKGQALVVYKDDI- 334 Query: 374 EARVLGGGII 383 +LGGG+I Sbjct: 335 ---LLGGGVI 341 >gi|157414371|ref|YP_001481627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni 81116] gi|172046984|sp|A8FJL3|MNMA_CAMJ8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|157385335|gb|ABV51650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni 81116] gi|307747016|gb|ADN90286.1| tRNA-specific 2-thiouridylase mnmA [Campylobacter jejuni subsp. jejuni M1] Length = 338 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 124/367 (33%), Positives = 197/367 (53%), Gaps = 34/367 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++VAMSGGVDS+V A LK G++VIG ++L+ + +++ +V Sbjct: 1 MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVA 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + +++ D ++ F+N V +PF +Y G+TP PC CNR +K LL + LG + Sbjct: 53 NFLQIPYHILDLQKDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R ++ +D +DQSYFL + ++ L L FPLG+MKKE V Sbjct: 113 LATGHYARL---------ENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163 Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 + A E+ A + +S +ICFV+ Y V+ + + G+++ +G+++G+H G Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQF-MDTKIPGEVLDSSGKVVGKHEG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V EP FV+ ++ +++IVG +E L++ L+ IN LF Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFKLKNIN-----LFI 276 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 DA C VKIR P V+ D + + G+ASGQ VFY D + Sbjct: 277 DA--KELDCEVKIRYRSKSTPCKVEIYEDKSAKITLKDPVYGLASGQMAVFYDHD----K 330 Query: 377 VLGGGII 383 V+ G I Sbjct: 331 VIASGFI 337 >gi|42518912|ref|NP_964842.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus johnsonii NCC 533] gi|73920127|sp|Q74JW9|MNMA_LACJO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|41583198|gb|AAS08808.1| probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus johnsonii NCC 533] Length = 375 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 137/372 (36%), Positives = 193/372 (51%), Gaps = 25/372 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++ S G C A +D D ++V Sbjct: 7 IRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDDTDDS---GVCTATEDYEDVKKVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + V F Y G TP P V CN+ +KF L L AD Sbjct: 64 DEIGIPYYSINFEKDYWERVFEYFLDEYKKGRTPNPDVMCNKEIKFKSFLDFAMDLDADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY +R V D+G M RP D +DQ+YFL +Q QL + FPL ++ K V Sbjct: 124 IAMGHYAATR--VDDNGVVH--MMRPKDGNKDQTYFLSQLSQDQLKKVIFPLANLTKPQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A GL A K DS ICF+ + + + A G +V +G+++G H G++ Sbjct: 180 REIAIASGLATAKKKDSTGICFIGERNFKKFLSEFLP--AQSGKMVTPDGKVVGEHAGLM 237 Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 YTIGQR GLG+ +P FVV D + +IV + + +Y ++ G F Sbjct: 238 YYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSKLLYATSLDASGVSFF 295 Query: 317 ---EDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACVFYTSD 371 D VD KC K R Q V V + D+ V+V+F++ V GQA VFY Sbjct: 296 TGQPDHDVD-LKCTAKFRYRQPDVGVTMHYRAKDNTVHVEFDEPARAVTPGQAIVFY--- 351 Query: 372 SNEARVLGGGII 383 N LGG I Sbjct: 352 -NGEECLGGATI 362 >gi|331017263|gb|EGH97319.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 366 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 195/371 (52%), Gaps = 26/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 3 RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F Y AG TP P + CNR +KF L LGAD++ Sbjct: 60 RIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K VR Sbjct: 120 ATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPQVR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + GL A K DS ICF+ + ++ D +++ A GDI G+++GRH+G++ Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGDIKTTEGEVIGRHSGLMY 232 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 +TIGQR+GLG+ A +P +V+ D +++ +IVG L + EI W+ Sbjct: 233 HTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN- 291 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + K K+R Q P +++ G F+ + V GQ+ VFY + Sbjct: 292 ---PIDLSSPRKLTAKVRYRQSDQPCTLEKTAGGYRATFDDPQRAVTPGQSVVFYDGEI- 347 Query: 374 EARVLGGGIIS 384 LGGG+I Sbjct: 348 ---CLGGGVIE 355 >gi|307720640|ref|YP_003891780.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfurimonas autotrophica DSM 16294] gi|306978733|gb|ADN08768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfurimonas autotrophica DSM 16294] Length = 341 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 126/370 (34%), Positives = 205/370 (55%), Gaps = 43/370 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR--RV 79 +V+V MSGGVDS++ + LLK GY+V G+ ++L+ S +++ AR + Sbjct: 4 KVLVGMSGGVDSTITSLLLKEQGYEVEGLYMKLH----------SKPGYHEIHQARAQKA 53 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + +V D +E F V PF +YA G+TP PC CNR +KF +++ ++GA Sbjct: 54 ADFVGIKLHVLDLQETFNEKVFQPFIDTYAEGKTPNPCALCNRNLKFGEMIKFADEIGAQ 113 Query: 140 VLATGHYIRS---RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 LATGHYI++ LY DD +DQSYFLF ++ L L+FPLG+ Sbjct: 114 YLATGHYIKTDGEYLYAADDDT------------KDQSYFLFYINREILPRLKFPLGERH 161 Query: 197 KESVRDLAREM-GLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 K+ +++LA + GL+ + +++S +ICFV+ Y D++K + G+++ G ++G Sbjct: 162 KKDIKELAASIKGLESFSSQAESSEICFVET-TYTDLLKDY-VKVDQVGEVLDQEGNVVG 219 Query: 255 RHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G ++YTIG+R+G V +P FV+ ++ ++++VG +E L + + L +N Sbjct: 220 EHKGYMHYTIGKRKGFTVHGAHDPHFVLSINPEKNQIVVGKKEDLACYDVKLNNLN---- 275 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 +F+D F VK+R V V+ +D Y+ E+S GVA GQA VFY D Sbjct: 276 -MFDDR--KEFDTTVKLRYRTKAVKCNVKIENDVAYLKLEESVFGVAVGQAAVFYDDD-- 330 Query: 374 EARVLGGGII 383 +++GGG I Sbjct: 331 --KLIGGGWI 338 >gi|66046419|ref|YP_236260.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. syringae B728a] gi|75501528|sp|Q4ZRK0|MNMA_PSEU2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|63257126|gb|AAY38222.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas syringae pv. syringae B728a] Length = 376 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 127/376 (33%), Positives = 197/376 (52%), Gaps = 26/376 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N + RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA Sbjct: 8 NSEMKRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADA 64 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + VCD I + + ++ + + V F Y AG TP P + CNR +KF L L Sbjct: 65 QAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALML 124 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++ Sbjct: 125 GADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELE 179 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH Sbjct: 180 KPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRH 237 Query: 257 NGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 +G++ +TIGQR+GLG+ A +P +V+ D ++ +IVG L + EI Sbjct: 238 SGLMYHTIGQRQGLGIGGLKDASDDPWYVLVKDLENNELIVGQGNDHPWLFSRALVSSEI 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + + K+R Q P +++ DG F+ + V GQ+ VFY Sbjct: 298 YWVN----PIDLSSPRRLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFY 353 Query: 369 TSDSNEARVLGGGIIS 384 + LGGG+I Sbjct: 354 DGEI----CLGGGVIE 365 >gi|327480910|gb|AEA84220.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas stutzeri DSM 4166] Length = 362 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 130/373 (34%), Positives = 196/373 (52%), Gaps = 32/373 (8%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 1 MIVGMSGGVDSSVSALLLLEQGYQVEGLFMKNWEEDDGTE---YCTAKEDLADAQAVCDR 57 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + + ++ + + V F + Y AG TP P + CNR +KF L LGAD++A Sbjct: 58 IGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLIA 117 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY+R R D R + + +D +DQSYFL A +QL FP+G+++K VR Sbjct: 118 TGHYVRRR-----DRDGRSELLKGLDPNKDQSYFLHAVGGEQLAKTLFPVGELEKPEVRA 172 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A + GL A K DS ICF+ + ++ D +K+ A G+I ++G+++GRH+G++ + Sbjct: 173 IAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGNIETVDGEVIGRHHGLMYH 230 Query: 263 TIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314 TIGQR+GLG+ A EP +V+ D + +IVG L + EI W+ Sbjct: 231 TIGQRQGLGIGGLKDASDEPWYVLSKDLQRNVLIVGQGNDHPWLFSRALLASEIYWVNP- 289 Query: 315 LFEDAVVD---GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 VD K K+R Q +++ DG FE + V GQ+ VFY + Sbjct: 290 ------VDLSAPLKLTAKVRYRQSDQACTLEQTSDGYRAVFEVPQRAVTPGQSVVFYDGE 343 Query: 372 SNEARVLGGGIIS 384 LGGG+I Sbjct: 344 V----CLGGGVIE 352 >gi|329667542|gb|AEB93490.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus johnsonii DPC 6026] Length = 375 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 137/372 (36%), Positives = 193/372 (51%), Gaps = 25/372 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++ S G C A +D D ++V Sbjct: 7 IRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDDTDDS---GVCTATEDYEDVKKVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + V F Y G TP P V CN+ +KF L L AD Sbjct: 64 DEIGIPYYSINFEKDYWERVFEYFLDEYKKGRTPNPDVMCNKEIKFKSFLDFAMDLDADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY +R V D+G M RP D +DQ+YFL +Q QL + FPL ++ K V Sbjct: 124 IAMGHYAATR--VDDNGVVH--MMRPKDGNKDQTYFLSQLSQDQLKKVIFPLANLTKPQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A GL A K DS ICF+ + + + A G +V +G+++G H G++ Sbjct: 180 REIAIASGLATAKKKDSTGICFIGERNFRKFLSEFLP--AQSGKMVTPDGKVVGEHAGLM 237 Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 YTIGQR GLG+ +P FVV D + +IV + + +Y ++ G F Sbjct: 238 YYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSKLLYATSLDASGVSFF 295 Query: 317 ---EDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACVFYTSD 371 D VD KC K R Q V V + D+ V+V+F++ V GQA VFY Sbjct: 296 TGQPDHDVD-LKCTAKFRYRQPDVGVTMHYRAKDNTVHVEFDEPARAVTPGQAIVFY--- 351 Query: 372 SNEARVLGGGII 383 N LGG I Sbjct: 352 -NGEECLGGATI 362 >gi|227889771|ref|ZP_04007576.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus johnsonii ATCC 33200] gi|227849635|gb|EEJ59721.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus johnsonii ATCC 33200] Length = 383 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 137/372 (36%), Positives = 194/372 (52%), Gaps = 25/372 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++ S G C A +D D ++V Sbjct: 15 IRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDDTDDS---GVCTATEDYEDVKKVA 71 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + + V F Y G TP P V CN+ +KF L L AD Sbjct: 72 DEIGIPYYSINFEKDYWDRVFEYFLDEYKKGRTPNPDVMCNKEIKFKSFLDFAMDLDADY 131 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY +R V D+G M RP D +DQ+YFL +Q QL + FPL ++ K V Sbjct: 132 IAMGHYAATR--VDDNGVVH--MMRPKDGNKDQTYFLNQLSQDQLKKVIFPLANLTKPQV 187 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A GL A K DS ICF+ + + + A G +V +G+++G H G++ Sbjct: 188 REIAIASGLATAKKKDSTGICFIGERNFRKFLSEFLP--AQSGKMVTPDGKVVGEHAGLM 245 Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 YTIGQR GLG+ +P FVV D + +IV + + +Y ++ G F Sbjct: 246 YYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSKLLYATSLDASGVSFF 303 Query: 317 ---EDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACVFYTSD 371 D VD KC K R Q V V + D+ V+V+F++ V GQA VFY Sbjct: 304 TGQPDHDVD-LKCTAKFRYRQPDVGVTMHYRAKDNTVHVEFDEPARAVTPGQAIVFY--- 359 Query: 372 SNEARVLGGGII 383 N LGG I Sbjct: 360 -NGEECLGGATI 370 >gi|194337468|ref|YP_002019262.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pelodictyon phaeoclathratiforme BU-1] gi|194309945|gb|ACF44645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pelodictyon phaeoclathratiforme BU-1] Length = 361 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 136/368 (36%), Positives = 197/368 (53%), Gaps = 25/368 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRVC 80 +VVV +SGGVDS+V A LL GY V G+ +++ ++ S + S D D + Sbjct: 6 KVVVGISGGVDSAVSACLLVEQGYAVTGLNIRVLDAPDESPSLRPSPLVISDHPDFQIPV 65 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 ++N+S +FR+ VI F Y G TP PC+ CN+ +K+ L R L AD Sbjct: 66 LSLNLSR-------KFRDEVIGYFHEDYLGGRTPNPCMVCNKKIKWFGLFEGLRLLDADF 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGH+ + +G+ R + + D E+DQSYFL+ +Q L FPLG++ K V Sbjct: 119 VATGHFAATSF---SEGRYR--LYKGADPEKDQSYFLWMLSQGDLARTLFPLGELTKPEV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA---LEGDIVHLNGQILGRHN 257 R LAR G+ A+K +SQ+ICFV Q Y + G+A +GDIV +G+++G+H Sbjct: 174 RALARSFGVRAAEKRESQEICFVPQDDYCGYLASAIPGLAERVADGDIVDESGRVIGKHR 233 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 G YTIGQRRGLGV+ EPL+V LD +R+ VG + SLE + IN +G E Sbjct: 234 GYPFYTIGQRRGLGVSAKEPLYVTALDTEQNRIEVGKKSSLECSSLVASGINLIG---ME 290 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + + KIR P ++ ++ V F + VA GQA VFY + Sbjct: 291 RPNIP-IEAYGKIRYRDRETPCTLEPFGENSATVSFSTPKSAVAKGQAAVFY----RDRE 345 Query: 377 VLGGGIIS 384 VLGGG I+ Sbjct: 346 VLGGGFIT 353 >gi|262394626|ref|YP_003286480.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio sp. Ex25] gi|262338220|gb|ACY52015.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio sp. Ex25] Length = 374 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 126/375 (33%), Positives = 200/375 (53%), Gaps = 28/375 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + + C A +D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R D + M R +D +DQSYFL+ + +Q+ FP+GD++K V Sbjct: 125 IAMGHYVRRSF---PDNGEKPAMLRGLDGNKDQSYFLYTLSHEQIGRSLFPVGDLEKPEV 181 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A K DS ICF+ + K+ D + R A G+I G+++G+H G++ Sbjct: 182 RRIAEEQGLVTAKKKDSTGICFIGERKFTDFLGRYLP--AQPGNIETPEGEVIGQHQGLM 239 Query: 261 NYTIGQRRGLGVAMG-------EPLFVVY--LDKNSSRVIVGP-RESLEVHRIYLREINW 310 +T+GQR+GL + EP FV L++N + G L+ + +++W Sbjct: 240 YHTLGQRKGLHIGGRKGGGGNEEPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLASQLHW 299 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + + D KC VK R Q+ +P + +D+ + V F++ ++ V GQ+ VFY Sbjct: 300 VD----REPIRDVMKCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAVFYK 355 Query: 370 SDSNEARVLGGGIIS 384 D LGGGII Sbjct: 356 DDV----CLGGGIIE 366 >gi|330972900|gb|EGH72966.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. aceris str. M302273PT] Length = 366 Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 126/371 (33%), Positives = 195/371 (52%), Gaps = 26/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 3 RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F Y AG TP P + CNR +KF L LGAD++ Sbjct: 60 KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K VR Sbjct: 120 ATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH+G++ Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMY 232 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 +TIGQR+GLG+ A +P +V+ D ++ +IVG L + EI W+ Sbjct: 233 HTIGQRQGLGIGGLKDASDDPWYVLVKDLENNELIVGQGNDHPWLFSRALVSSEIYWVN- 291 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + + K+R Q P +++ DG F+ + V GQ+ VFY + Sbjct: 292 ---PIDLSSPRRLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI- 347 Query: 374 EARVLGGGIIS 384 LGGG+I Sbjct: 348 ---CLGGGVIE 355 >gi|317010016|gb|ADU80596.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori India7] Length = 342 Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 203/370 (54%), Gaps = 36/370 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78 M++ V +SGGVDSS A LK G++++G+ L+L+ S K D+Y + ++ Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNVQK 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG Sbjct: 51 ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + + + + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 111 EKIATGHYARVK-----EIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165 Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++ LA +G + +SQ+ICFV++ Y D +K+ + + EG + +L G+++G Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEVIG 222 Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G + YTIG+R+G V EP FVV +D + ++VG +E L H + + + + D Sbjct: 223 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKD 282 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F++ + F+K R P FV D+ + V+F++ GVA GQA V Y D Sbjct: 283 --FKNG-----EYFIKARYRSVPTKAFVSLKDEVIEVEFKEPFYGVAKGQALVVYQDDI- 334 Query: 374 EARVLGGGII 383 +LGGG+I Sbjct: 335 ---LLGGGVI 341 >gi|77459818|ref|YP_349325.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas fluorescens Pf0-1] gi|123604062|sp|Q3KA70|MNMA_PSEPF RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|77383821|gb|ABA75334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas fluorescens Pf0-1] Length = 374 Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 129/381 (33%), Positives = 199/381 (52%), Gaps = 29/381 (7%) Query: 15 DKNPKDM---RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 D P D RV+V MSGGVDSSV A LL GY+V G+ ++ + ++ C A Sbjct: 3 DPAPSDTSKKRVIVGMSGGVDSSVSALLLIEQGYEVEGLFMKNWEEDDGTEY---CTAMD 59 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DA+ VCD I + + ++ + + V F + Y AG TP P + CNR +KF L Sbjct: 60 DLADAQAVCDKIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLD 119 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP Sbjct: 120 YAMMLGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFP 174 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 +G+++K VR +A + L A K DS ICF+ + ++ D +K+ A G+I G+ Sbjct: 175 VGELEKPEVRAIAEKYELATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGEIKTTEGE 232 Query: 252 ILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 ++GRH+G++ +TIGQR+GLG+ A EP +V+ D +++ +IVG L + Sbjct: 233 VIGRHHGLMYHTIGQRQGLGIGGLKDAGDEPWYVLRKDLDTNELIVGQGNNHPWLFSSAL 292 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 EI W+ + + K+R Q +++ D G F++ + V GQ Sbjct: 293 LASEIYWVN----PIDLSQPLRLTAKVRYRQSDQACTLEKTDTGYRAVFDEPQRAVTPGQ 348 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY + LGGG+I Sbjct: 349 SVVFYDGEI----CLGGGVIE 365 >gi|167034615|ref|YP_001669846.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas putida GB-1] gi|189040506|sp|B0KMQ6|MNMA_PSEPG RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|166861103|gb|ABY99510.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas putida GB-1] Length = 374 Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 128/380 (33%), Positives = 204/380 (53%), Gaps = 26/380 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+P RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ D Sbjct: 7 KDPAKTRVIVGMSGGVDSSVSALLLIEQGYQVEGLFMKNWEEDDGTE---YCTAREDLAD 63 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ VCD I + + ++ + + V F Y AG TP P + CNR +KF L Sbjct: 64 AQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALS 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD++ATGHY+R R D G ++ + +D +DQSYFL A +++ FP+G++ Sbjct: 124 LGADLIATGHYVRRR----DTGDLTELL-KGLDPNKDQSYFLHAVGGKEIARTLFPVGEL 178 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + GL A K DS ICF+ + ++ D +K+ A GDI G+++GR Sbjct: 179 EKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGDIETTEGEVIGR 236 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 H+G++ +TIGQR+GLG+ A EP +V++ D + ++VG + E ++ R + Sbjct: 237 HHGLMYHTIGQRQGLGIGGLKDAGDEPWYVLHKDLTRNVLVVG--QGNEHPWLFSRAL-- 292 Query: 311 LGDGLFEDAVVD---GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 L +F +D + K+R Q ++ + G F++ + V GQ+ VF Sbjct: 293 LASEIFWVNPIDLSSPRQLTAKVRYRQSDQQCTLELTETGYRAVFDEPQRAVTPGQSVVF 352 Query: 368 YTSDSNEARVLGGGIISGSK 387 Y + LGGG+I ++ Sbjct: 353 YDGEV----CLGGGVIEAAE 368 >gi|90961839|ref|YP_535755.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus salivarius UCC118] gi|122449023|sp|Q1WTT7|MNMA_LACS1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|90821033|gb|ABD99672.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus salivarius UCC118] Length = 375 Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 133/377 (35%), Positives = 200/377 (53%), Gaps = 25/377 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+ +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + S G C +D D Sbjct: 2 KDKSQIRVVVGMSGGVDSSVSAYLLKQQGYDVVGVFMKNWDDKNDS---GVCTVTEDYQD 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 +V I + +Y ++E+ + + V F Y G TP P + CN+ VKF L Sbjct: 59 VAKVASQIGIPYYSVNFEKEYWDRVFTYFLDEYKNGRTPNPDIMCNKEVKFKAFLDYAMS 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 + AD +A GHY ++L +DG R + R D +DQ+YFL +Q+QL + FP+G + Sbjct: 119 IDADYIAMGHY--AQLRRDEDG--RVHLLRGADDNKDQTYFLSQLSQEQLQKVMFPIGHL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL A K DS ICF+ + + + A G++V L+G++ G Sbjct: 175 QKSEVRRIAEEAGLATAKKKDSTGICFIGERNFSKFLGEFLP--AQPGEMVTLDGEVKGN 232 Query: 256 HNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 H G++NYTIGQR+GLG+ EP FV+ D ++ ++VG E L + + ++ Sbjct: 233 HFGLMNYTIGQRKGLGIGGDGKSNEPWFVIGKDLKTNTLLVGQGYHNEHLYANSLDASKL 292 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD--FEKSEVGVASGQACV 366 +++ D D D F C K R Q V V+ N+D V+ F++ + GQ V Sbjct: 293 SFVDD--ISDC-GDEFHCTAKFRYRQKDTGVTVKFNEDRTKVEVIFDEPVRAITPGQEVV 349 Query: 367 FYTSDSNEARVLGGGII 383 FY + LG G I Sbjct: 350 FYDGE----ECLGSGTI 362 >gi|254368479|ref|ZP_04984496.1| hypothetical protein FTAG_01322 [Francisella tularensis subsp. holarctica FSC022] gi|157121373|gb|EDO65574.1| hypothetical protein FTAG_01322 [Francisella tularensis subsp. holarctica FSC022] Length = 359 Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 133/374 (35%), Positives = 205/374 (54%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ Sbjct: 2 ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F Y AG TP P + CN+ +KF LS LG Sbjct: 59 VCDSIGIPFKKINFTAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + RL DG + + + +D +DQ+YFL+ Q+QL FP+G+++K Sbjct: 119 DYIATGHYAQIRLAA--DGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ + + + A +G+I NG +G H+G Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 232 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLREI--NW 310 ++ YTIGQR+GLG+ + P F D +N+ + V + + + L+ I +W Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIKLSW 292 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + G+ A D F+C K+R Q V+ N DG V V F++ + + GQ+ VFY Sbjct: 293 VA-GM---APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348 Query: 370 SDSNEARVLGGGII 383 D LGGG+I Sbjct: 349 DDV----CLGGGVI 358 >gi|28572507|ref|NP_789287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Tropheryma whipplei TW08/27] gi|81629880|sp|Q83HX5|MNMA_TROW8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|28410639|emb|CAD67025.1| probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Tropheryma whipplei TW08/27] Length = 359 Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 144/382 (37%), Positives = 201/382 (52%), Gaps = 41/382 (10%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+V+ AMSGGVDS+V AA G+DV+GV L L SR AS ++G CC +D DA + Sbjct: 1 MKVLAAMSGGVDSAVAAARAVDMGHDVVGVHLAL--SRSASGKRG-CCTPRDAQDAAQAA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 TI + YV+D+ E F+ VI F S Y+AG TP PC+ CN +KFS LL LG D Sbjct: 58 QTIGIPFYVWDFSEEFQEKVIDNFISEYSAGRTPNPCLRCNEHIKFSSLLRRALALGFDA 117 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KKES 199 + TGHY +R+++ +DG + + R +DQSY L Q QL FPLG K+ Sbjct: 118 VCTGHY--ARVFLDEDGTYQ--LHRASSWAKDQSYVLAVLQQAQLKHCYFPLGATPSKKL 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-------EGDIVHLNGQI 252 VR A E GL ++ K DS D+CF+ N G L +GDI+ GQ Sbjct: 174 VRQEADERGLKVSKKPDSHDVCFIPSS---------NTGAWLSQRIGRRDGDIIDDLGQR 224 Query: 253 LGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRI--YLR 306 +G H G YT+GQR+GL ++ G+P +V+ ++ S+ V+VGPRESL V + Sbjct: 225 VGSHTGAFAYTVGQRKGLRLSSPAWDGKPRYVLDIEPISNTVVVGPRESLRVDELSGAFT 284 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 W F ++ C V++R+ DPV DD + V ++ VA GQ+ Sbjct: 285 TTGW----CFTSRPIE---CSVQVRAHSDPVSAIAFIRDDVLVVRPDEPVFAVAKGQSAA 337 Query: 367 FYTSDSNEARVLGGGIISGSKR 388 Y RVLG +I +K+ Sbjct: 338 IYRG----TRVLGQLMIDNTKK 355 >gi|301301190|ref|ZP_07207346.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300214575|gb|ADJ78991.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus salivarius CECT 5713] gi|300851189|gb|EFK78917.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 375 Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 133/377 (35%), Positives = 200/377 (53%), Gaps = 25/377 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+ +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + S G C +D D Sbjct: 2 KDKSQIRVVVGMSGGVDSSVSAYLLKQQGYDVVGVFMKNWDDKNDS---GVCTVTEDYQD 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 +V I + +Y ++E+ + + V F Y G TP P + CN+ VKF L Sbjct: 59 VAKVASQIGIPYYSVNFEKEYWDRVFTYFLDEYKNGRTPNPDIMCNKEVKFKAFLDYAMS 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 + AD +A GHY ++L +DG R + R D +DQ+YFL +Q+QL + FP+G + Sbjct: 119 IDADYIAMGHY--AQLRRDEDG--RVHLLRGADDNKDQTYFLSQLSQEQLQKVMFPIGHL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL A K DS ICF+ + + + A G++V L+G++ G Sbjct: 175 QKSEVRRIAEEAGLATAKKKDSTGICFIGERNFSKFLGEFLP--AQPGEMVTLDGEVKGN 232 Query: 256 HNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 H G++NYTIGQR+GLG+ EP FV+ D ++ ++VG E L + + ++ Sbjct: 233 HFGLMNYTIGQRKGLGIGGDGKSNEPWFVIGKDLKTNTLLVGQGYHNEHLYANSLDASKL 292 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD--FEKSEVGVASGQACV 366 +++ D D D F C K R Q V V+ N+D V+ F++ + GQ V Sbjct: 293 SFVDD--ISDR-GDEFHCTAKFRYRQKDTGVTVKFNEDRTKVEVIFDEPVRAITPGQEVV 349 Query: 367 FYTSDSNEARVLGGGII 383 FY + LG G I Sbjct: 350 FYDGE----ECLGSGTI 362 >gi|307287836|ref|ZP_07567872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0109] gi|306501170|gb|EFM70476.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0109] gi|315164727|gb|EFU08744.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX1302] Length = 374 Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 140/371 (37%), Positives = 199/371 (53%), Gaps = 26/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D +V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y G TP P V CN+ +KF L QLGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R +D +DQ+YFL +Q QL FPLG M+K VR Sbjct: 125 ATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS +CF+ + + + + N A +G++V +G+I G+H+G++ Sbjct: 181 AIAERAGLATAKKKDSTGVCFIGEKNFKEFLS--NYLPAKKGNMVTEDGEIKGQHDGLMY 238 Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314 YTIGQR+GLG+ G EP FV+ D ++ + VG E L + E+++ D Sbjct: 239 YTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVD- 297 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV--YVDFEKSEVGVASGQACVFYTSDS 372 + F C K R Q +PV V ++DG V F++ V GQA VFY Sbjct: 298 ---TPMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFY---- 350 Query: 373 NEARVLGGGII 383 + LGGG+I Sbjct: 351 DGMECLGGGLI 361 >gi|302558240|ref|ZP_07310582.1| tRNA methyl transferase [Streptomyces griseoflavus Tu4000] gi|302475858|gb|EFL38951.1| tRNA methyl transferase [Streptomyces griseoflavus Tu4000] Length = 377 Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 143/393 (36%), Positives = 204/393 (51%), Gaps = 28/393 (7%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAG 70 + + P+ +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G+ CC Sbjct: 3 ETSQRPRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 61 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 +D DARR D I + YV+D +RFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 62 EDSRDARRAADVIGIPFYVWDLADRFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALL 121 Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 LG D + TGHY +++ + +DG R + R D+ +DQSY L +QL F Sbjct: 122 DKALALGFDAVCTGHY--AQVILREDGTRE--LHRASDMAKDQSYVLGVLDDRQLAHAMF 177 Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVH 247 PLGD KE +R A GL +A K DS DICF+ G + R+ EGDIV Sbjct: 178 PLGDTVTTKEEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLAGRLGRA---EGDIVD 234 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 +G +G H G +TIGQR+GL + G+P +V+ + ++ V VGP +L+V + Sbjct: 235 ESGSKVGTHEGAYGFTIGQRKGLRIGTPAPDGKPRYVLDISPVTNTVTVGPAAALDVTAL 294 Query: 304 YLREINWLGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362 + W G A G + ++R+ V + D + V F + GVA G Sbjct: 295 SAIKPRWCG------AAPSGPGTYTAQLRAHGGETEVTAELVDGTLEVSFTEPVRGVAPG 348 Query: 363 QACVFYTSDSNEARVLGGGIISGSKRSDAVEES 395 QA V Y + RV+G I+ + R+ A S Sbjct: 349 QAIVLY----DGTRVVGSATIASTVRAAAATAS 377 >gi|227890864|ref|ZP_04008669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus salivarius ATCC 11741] gi|227867273|gb|EEJ74694.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus salivarius ATCC 11741] Length = 375 Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 133/377 (35%), Positives = 200/377 (53%), Gaps = 25/377 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+ +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + S G C +D D Sbjct: 2 KDKSQIRVVVGMSGGVDSSVSAYLLKQQGYDVVGVFMKNWDDKNDS---GVCTVTEDYQD 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 +V I + +Y ++E+ + + V F Y G TP P + CN+ VKF L Sbjct: 59 VAKVASQIGIPYYSVNFEKEYWDRVFTYFLDEYKDGRTPNPDIMCNKEVKFKAFLDYAMS 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 + AD +A GHY ++L +DG R + R D +DQ+YFL +Q+QL + FP+G + Sbjct: 119 IDADYIAMGHY--AQLRRDEDG--RVHLLRGADDNKDQTYFLSQLSQEQLQKVMFPIGHL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL A K DS ICF+ + + + A G++V L+G++ G Sbjct: 175 QKSEVRRIAEEAGLATAKKKDSTGICFIGERNFSKFLGEFLP--AQPGEMVTLDGEVKGN 232 Query: 256 HNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 H G++NYTIGQR+GLG+ EP FV+ D ++ ++VG E L + + ++ Sbjct: 233 HFGLMNYTIGQRKGLGIGGDGKSNEPWFVIGKDLKTNTLLVGQGYHNEHLYANSLDASKL 292 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD--FEKSEVGVASGQACV 366 +++ D D D F C K R Q V V+ N+D V+ F++ + GQ V Sbjct: 293 SFVDD--ISDR-GDEFHCTAKFRYRQKDTGVTVKFNEDRTKVEVIFDEPVRAITPGQEVV 349 Query: 367 FYTSDSNEARVLGGGII 383 FY + LG G I Sbjct: 350 FYDGE----ECLGSGTI 362 >gi|29376579|ref|NP_815733.1| tRNA-specific 2-thiouridylase MnmA [Enterococcus faecalis V583] gi|227520188|ref|ZP_03950237.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0104] gi|227555378|ref|ZP_03985425.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis HH22] gi|256762940|ref|ZP_05503520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis T3] gi|256853584|ref|ZP_05558949.1| tRNA-specific 2-thiouridylase mnmA [Enterococcus faecalis T8] gi|257079445|ref|ZP_05573806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis JH1] gi|257087270|ref|ZP_05581631.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis D6] gi|257090346|ref|ZP_05584707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis CH188] gi|257419691|ref|ZP_05596685.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis T11] gi|257422150|ref|ZP_05599140.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis X98] gi|294780347|ref|ZP_06745716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis PC1.1] gi|307270242|ref|ZP_07551555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX4248] gi|307295656|ref|ZP_07575491.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0411] gi|312900841|ref|ZP_07760135.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0470] gi|312902847|ref|ZP_07762051.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0635] gi|73920123|sp|Q820U1|MNMA_ENTFA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|29344043|gb|AAO81803.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis V583] gi|227072360|gb|EEI10323.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0104] gi|227175492|gb|EEI56464.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis HH22] gi|256684191|gb|EEU23886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis T3] gi|256710527|gb|EEU25570.1| tRNA-specific 2-thiouridylase mnmA [Enterococcus faecalis T8] gi|256987475|gb|EEU74777.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis JH1] gi|256995300|gb|EEU82602.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis D6] gi|256999158|gb|EEU85678.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis CH188] gi|257161519|gb|EEU91479.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis T11] gi|257163974|gb|EEU93934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis X98] gi|294452611|gb|EFG21044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis PC1.1] gi|306496368|gb|EFM65945.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0411] gi|306513458|gb|EFM82077.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX4248] gi|310633901|gb|EFQ17184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0635] gi|311291940|gb|EFQ70496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0470] gi|315025815|gb|EFT37747.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX2137] gi|315028590|gb|EFT40522.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX4000] gi|315031109|gb|EFT43041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0017] gi|315149261|gb|EFT93277.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0012] gi|315157187|gb|EFU01204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0043] gi|315171619|gb|EFU15636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX1342] gi|315173202|gb|EFU17219.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX1346] gi|315575062|gb|EFU87253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0309B] gi|315576621|gb|EFU88812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0630] gi|315582488|gb|EFU94679.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0309A] gi|327535526|gb|AEA94360.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis OG1RF] Length = 374 Score = 206 bits (523), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 140/371 (37%), Positives = 199/371 (53%), Gaps = 26/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D +V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y G TP P V CN+ +KF L QLGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R +D +DQ+YFL +Q QL FPLG M+K VR Sbjct: 125 ATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS +CF+ + + + + N A +G++V +G+I G+H+G++ Sbjct: 181 AIAERAGLATAKKKDSTGVCFIGEKNFKEFLS--NYLPAKKGNMVTEDGEIKGQHDGLMY 238 Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314 YTIGQR+GLG+ G EP FV+ D ++ + VG E L + E+++ D Sbjct: 239 YTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVD- 297 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV--YVDFEKSEVGVASGQACVFYTSDS 372 + F C K R Q +PV V ++DG V F++ V GQA VFY Sbjct: 298 ---TPMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFY---- 350 Query: 373 NEARVLGGGII 383 + LGGG+I Sbjct: 351 DGMECLGGGLI 361 >gi|317182580|dbj|BAJ60364.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori F57] Length = 342 Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 126/370 (34%), Positives = 202/370 (54%), Gaps = 36/370 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78 M++ V +SGGVDSS A LK G++++G+ L+L+ S K D+Y +A++ Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG Sbjct: 51 ACEFLGIPLEVLDFQKDFKSAVYDAFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + + + + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 111 EKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165 Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++ LA +G + +SQ+ICFV++ Y D +K+ + + EG + +L G+++G Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEVIG 222 Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G + YTIG+R+G V EP FVV +D + +IVG +E L + + + D Sbjct: 223 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATRFLKAKNKSLTKD 282 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F++ + F+K R P FV D+ + V+FE+ GVA GQA V Y D Sbjct: 283 --FKNG-----EYFIKARYRSVPAKAFVSLRDEAIEVEFEEPFYGVAKGQALVVYKDDI- 334 Query: 374 EARVLGGGII 383 +LGGG+I Sbjct: 335 ---LLGGGVI 341 >gi|308274462|emb|CBX31061.1| tRNA-specific 2-thiouridylase mnmA [uncultured Desulfobacterium sp.] Length = 354 Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 123/366 (33%), Positives = 186/366 (50%), Gaps = 16/366 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++ +A+SGGVDS V A LLK GYDV G+ + K + S ++ ++ Sbjct: 4 KIAIALSGGVDSLVAAYLLKNQGYDVTGI--HFITGYEHGKVQDSGKNNPELQKITQLAK 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I ++ FD +F+ VI F +Y AG+TP PC+ CN+++KF +L +++G L Sbjct: 62 QIEINIEFFDCRTQFKQIVINYFTQTYKAGKTPNPCIICNQSIKFGVVLEFAKKIGCTFL 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + G DG + + D ++DQSYFL +Q+QL FPL K+ V Sbjct: 122 ATGHY--AGKMTGRDGMFH--LLKGADTKKDQSYFLSMLSQKQLSCAIFPLYGFTKKEVI 177 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 L+ E GL A + +SQDICF++ Y D + R +G IV +NG+ +G H GI Sbjct: 178 RLSEEKGLHPAVQKESQDICFIKDNDYADFLIRETGFSPNDGIIVDINGKRIGNHKGIHQ 237 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 +T+GQRRG+ EP +V+ +D +++ V+VG + L INW+ + Sbjct: 238 FTVGQRRGINCPAPEPYYVISIDADANSVVVGSKNDLLTKHCKAANINWIAKSYTTE--- 294 Query: 322 DGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 K +IR VP V + ++FE + V GQ VFY D V+GG Sbjct: 295 --LKVCTRIRYRNKEVPSVLFPEPGNCATIEFESPQSAVTPGQCAVFYIGD----EVIGG 348 Query: 381 GIISGS 386 G I + Sbjct: 349 GFIENA 354 >gi|300933640|ref|ZP_07148896.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium resistens DSM 45100] Length = 374 Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 145/391 (37%), Positives = 196/391 (50%), Gaps = 46/391 (11%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84 MSGGVDS+V A+ G+DV+GV L L S +A R GS CC+ +D DARRV D + Sbjct: 1 MSGGVDSAVAASRALEAGHDVVGVHLALSQSPEAV-RAGSRGCCSLEDSADARRVADKLG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV+D+ +RF+ VI F SY+ GETP PC+ CN +KF LL + LG D +ATG Sbjct: 60 IPFYVWDFSDRFKADVIDNFVDSYSIGETPNPCLRCNEKIKFEALLDRSIALGFDAVATG 119 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY +RL+ G ++ R +D +DQSY L T +QL FP+GD K +R+ A Sbjct: 120 HY--ARLHDG-------VLRRGIDANKDQSYVLGVLTDEQLAHCMFPVGDTIKPDIREEA 170 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNGIINYT 263 E G +A K DS DICF+ G+ + I L +V G+ L H+G+ +T Sbjct: 171 AENGFGVASKPDSHDICFIPDGR---TQAFLGNKIGLRPGMVQSTGGEKLADHDGVYGFT 227 Query: 264 IGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 IGQR+GLG+ G+P +V +D + V VG R L + I + L D Sbjct: 228 IGQRKGLGLPREGLDGKPRYVTDIDAATGTVTVGHRRDLRIGGIVADRLKRL------DP 281 Query: 320 VVDG--FKCFVKIRSSQDPVPVFVQRNDDGVYVDF---EKSE---------------VGV 359 V G F C V++R+ VP + DD V K E GV Sbjct: 282 EVHGREFDCEVQVRAHGGVVPAVARLVDDPEPVTPAGRNKHEDEAPFRLELELAEPLEGV 341 Query: 360 ASGQACVFYTSDSNEARVLGGGIISGSKRSD 390 A GQA V Y D +LG G I + D Sbjct: 342 ARGQAAVVYRPDEAGDILLGSGTIRATTPWD 372 >gi|269957192|ref|YP_003326981.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Xylanimonas cellulosilytica DSM 15894] gi|269305873|gb|ACZ31423.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Xylanimonas cellulosilytica DSM 15894] Length = 400 Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 147/397 (37%), Positives = 210/397 (52%), Gaps = 40/397 (10%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AAL G+DV+GV + L +R R GS CC+ +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAALAVEAGHDVVGVHMALSRNRD-QFRTGSRGCCSIEDASDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + +YV+D ERF + V+ F + Y AG TP PCV CN +KF LL LG Sbjct: 60 AADVLGIPYYVWDLSERFEDTVVADFLAEYEAGRTPNPCVRCNEHIKFETLLEKATALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197 D +ATGHY +R+ DG R + R + E+DQSY L ++L FPLG K Sbjct: 120 DAVATGHY--ARVVERPDGTRE--LHRSPNTEKDQSYVLAVMGPERLARAIFPLGGFASK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHLNGQILGRH 256 VR A GL ++ K DS DICFV G ++ R+ + G++V +G ++G H Sbjct: 176 AEVRAEAARRGLAVSAKPDSYDICFVADGDTRGFLRDRLG---SRPGEVVDTSGAVVGEH 232 Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G YT+GQR+GL + A G+P +V+ + ++++V+VGP E L V RI W Sbjct: 233 DGAYAYTVGQRKGLALGRPAADGKPRYVLDVRTSTNQVVVGPAELLTVDRIAGDRAVWFT 292 Query: 313 D-----------GL-FEDAVVDGFKCF------VKIRSSQDPVPV-FVQRNDDGVYVDFE 353 D GL D V G +++R+ PVP + D GV V+ Sbjct: 293 DPAPGPRASRDVGLPTPDTDVPGRPSSPVDDVEIQVRAHGTPVPARILDAADGGVEVELT 352 Query: 354 KSEV-GVASGQACVFYTSDSNEARVLGGGIISGSKRS 389 + + GVA+GQ+ V Y +VLG ++ + R+ Sbjct: 353 GTPLRGVAAGQSLVVYRG----TQVLGQATVTRAWRA 385 >gi|218891213|ref|YP_002440079.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa LESB58] gi|226704774|sp|B7UV15|MNMA_PSEA8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|218771438|emb|CAW27205.1| tRNA methyltransferase [Pseudomonas aeruginosa LESB58] Length = 375 Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 130/387 (33%), Positives = 204/387 (52%), Gaps = 36/387 (9%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 P+ RV+V MSGGVDSSV A LL + GY V G+ ++ ++ ++ C A +D+ DA Sbjct: 7 TPRRERVIVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWDEDDGTE---YCTAREDLADA 63 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + VCD I + + ++ + + V F + Y AG TP P + CNR +KF L L Sbjct: 64 QAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALML 123 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++ Sbjct: 124 GADLIATGHYVRRR-----DRDGRTELLKGLDPNKDQSYFLHAVGGEQIARSLFPVGELE 178 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A + GL A K DS ICF+ + ++ D +K+ A GDI + G+++GRH Sbjct: 179 KPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLKQYLP--AQPGDIETIEGKVIGRH 236 Query: 257 NGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP--------RESLEVHRI 303 +G++ +TIGQR+GLG+ A +P +V+ D + ++VG +L RI Sbjct: 237 SGLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLASRI 296 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 Y W+ E + K+R Q +++ +G F++ + V GQ Sbjct: 297 Y-----WVNPVELERPR----RLRAKVRYRQSDQDCVLEKTAEGYRAVFDEPQRAVTPGQ 347 Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSD 390 + VFY D LGGG+I ++ D Sbjct: 348 SVVFYDGDV----CLGGGVIETAEAWD 370 >gi|300811318|ref|ZP_07091815.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497682|gb|EFK32707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 375 Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 139/381 (36%), Positives = 197/381 (51%), Gaps = 29/381 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A +D D ++V Sbjct: 7 IRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TNDDGVCTATEDYEDVKKVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + V F Y AG TP P + CN +KF L L AD Sbjct: 64 DKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEIKFKSFLEYALDLDADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LA GHY ++ V ++G M RP D +DQ+YFL TQ+Q+ + FPL D+ K V Sbjct: 124 LAMGHYAKTM--VDENGVTH--MMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQDLTKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A K DS ICF+ + + + A GD+V +G+++G+H G++ Sbjct: 180 RRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLP--AQGGDMVTPDGKVVGQHAGLM 237 Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 YTIGQR+GLG+ + P FVV D +++IV + + R+Y + G F Sbjct: 238 YYTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIV--EQGYDSPRLYADRLQASGMTFF 295 Query: 317 -----EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD--FEKSEVGVASGQACVFYT 369 ED FK K R Q V V V+ + D F++ V GQA V Y Sbjct: 296 TGNPEEDTE---FKATAKFRYRQCDVGVTVKYHAASKTADVYFDEPARAVTPGQALVLY- 351 Query: 370 SDSNEARVLGGGIISGSKRSD 390 N LGGG I + + D Sbjct: 352 ---NGEECLGGGNIDAAFKDD 369 >gi|104773839|ref|YP_618819.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|123077302|sp|Q1GAS1|MNMA_LACDA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|103422920|emb|CAI97582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 375 Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 140/381 (36%), Positives = 196/381 (51%), Gaps = 29/381 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A +D D ++V Sbjct: 7 IRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TNDDGVCTATEDYEDVKKVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + V F Y AG TP P + CN VKF L L AD Sbjct: 64 DKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEVKFKSFLEYALDLDADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LA GHY ++ V ++G M RP D +DQ+YFL TQ+Q+ + FPL D+ K V Sbjct: 124 LAMGHYAKTM--VDENGVTH--MMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQDLTKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A K DS ICF+ + + + A GD+V +G+++G H G++ Sbjct: 180 RRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLP--AQGGDMVTPDGKVVGHHAGLM 237 Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 YTIGQR+GLG+ + P FVV D +++IV + + R+Y + G F Sbjct: 238 YYTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIV--EQGYDSPRLYADRLQASGMTFF 295 Query: 317 -----EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD--FEKSEVGVASGQACVFYT 369 ED FK K R Q V V V+ + D F++ V GQA V Y Sbjct: 296 TGNPEEDTE---FKATAKFRYRQCDVGVTVKYHAASKTADVYFDEPARAVTPGQALVLY- 351 Query: 370 SDSNEARVLGGGIISGSKRSD 390 N LGGG I + + D Sbjct: 352 ---NGEECLGGGNIDAAFKDD 369 >gi|152989329|ref|YP_001347945.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa PA7] gi|205816889|sp|A6V4G0|MNMA_PSEA7 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|150964487|gb|ABR86512.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas aeruginosa PA7] Length = 375 Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 130/387 (33%), Positives = 204/387 (52%), Gaps = 36/387 (9%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 P+ RV+V MSGGVDSSV A LL++ GY V G+ ++ ++ ++ C A +D+ DA Sbjct: 7 TPRRERVIVGMSGGVDSSVSALLLQQQGYQVEGLFMKNWDEDDGTE---YCTAREDLADA 63 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + VCD I + + ++ + + V F + Y AG TP P + CNR +KF L L Sbjct: 64 QAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALML 123 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++ Sbjct: 124 GADLIATGHYVRRR-----DLDGRTELLKGLDPNKDQSYFLHAVGGEQIARSLFPVGELE 178 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A + GL A K DS ICF+ + ++ D +K+ A GDI G+++GRH Sbjct: 179 KPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLKQYLP--AQPGDIETTEGKVIGRH 236 Query: 257 NGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP--------RESLEVHRI 303 +G++ +TIGQR+GLG+ A +P +V+ D + ++VG +L RI Sbjct: 237 SGLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLASRI 296 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 Y W+ E + K+R Q +++ DG F++ + V GQ Sbjct: 297 Y-----WVNPVELERPR----RLRAKVRYRQSDQDCVLEKTADGYRAVFDEPQRAVTPGQ 347 Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSD 390 + VFY + LGGG+I ++ D Sbjct: 348 SVVFYDGEV----CLGGGVIETAEAWD 370 >gi|255975449|ref|ZP_05426035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis T2] gi|256961498|ref|ZP_05565669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis Merz96] gi|293385188|ref|ZP_06631008.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis R712] gi|293388180|ref|ZP_06632702.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis S613] gi|307277736|ref|ZP_07558822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0860] gi|312908274|ref|ZP_07767238.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis DAPTO 512] gi|312910654|ref|ZP_07769495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis DAPTO 516] gi|255968321|gb|EET98943.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis T2] gi|256951994|gb|EEU68626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis Merz96] gi|291077561|gb|EFE14925.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis R712] gi|291082420|gb|EFE19383.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis S613] gi|306505615|gb|EFM74799.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0860] gi|310625688|gb|EFQ08971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis DAPTO 512] gi|311289030|gb|EFQ67586.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis DAPTO 516] Length = 374 Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 140/371 (37%), Positives = 199/371 (53%), Gaps = 26/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D +V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y G TP P V CN+ +KF L QLGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R +D +DQ+YFL +Q QL FPLG M+K VR Sbjct: 125 ATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQTQLAKTMFPLGGMEKSEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS +CF+ + + + + N A +G++V +G+I G+H+G++ Sbjct: 181 AIAERAGLATAKKKDSTGVCFIGEKNFKEFLS--NYLPAKKGNMVTEDGEIKGQHDGLMY 238 Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314 YTIGQR+GLG+ G EP FV+ D ++ + VG E L + E+++ D Sbjct: 239 YTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVD- 297 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV--YVDFEKSEVGVASGQACVFYTSDS 372 + F C K R Q +PV V ++DG V F++ V GQA VFY Sbjct: 298 ---TPMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFY---- 350 Query: 373 NEARVLGGGII 383 + LGGG+I Sbjct: 351 DGMECLGGGLI 361 >gi|330958166|gb|EGH58426.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. maculicola str. ES4326] Length = 366 Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 125/370 (33%), Positives = 194/370 (52%), Gaps = 26/370 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 3 RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F Y AG TP P + CNR +KF L LGAD++ Sbjct: 60 KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R R D + + +D +DQSYFL A +Q+ FP+G+++K VR Sbjct: 120 ATGHYVRRR-----DTDGHTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPQVR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH+G++ Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMY 232 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 +TIGQR+GLG+ A +P +V+ D ++ +IVG L + EI W+ Sbjct: 233 HTIGQRQGLGIGGLKDASDDPWYVLVKDLQNNELIVGQGNDHPWLFSSALVSSEIYWVN- 291 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + + K+R Q P +++ DG F+ + V GQ+ VFY + Sbjct: 292 ---PIDLSSPRRLTAKVRYRQSDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI- 347 Query: 374 EARVLGGGII 383 LGGG+I Sbjct: 348 ---CLGGGVI 354 >gi|326803425|ref|YP_004321243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aerococcus urinae ACS-120-V-Col10a] gi|326651703|gb|AEA01886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aerococcus urinae ACS-120-V-Col10a] Length = 374 Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 130/381 (34%), Positives = 197/381 (51%), Gaps = 26/381 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ +VV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D + Sbjct: 5 KNKKVVLGMSGGVDSSVSALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYRDVQA 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V I + +Y ++E+ + + V F Y TP P V CN+ +KF L LGA Sbjct: 62 VASQIGIPYYSVNFEKEYWDRVFEYFLDEYRHDRTPNPDVMCNKEIKFKAFLDYALDLGA 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +A GHY R R D G+ + R +D +DQ+YFL +Q+QL FP+G+++K Sbjct: 122 DYVAMGHYARVR--TNDQGEVE--LLRGVDSNKDQTYFLNQLSQEQLQHALFPIGELEKS 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A + L A K DS +CF+ + + + N +A G + L+GQ++ H+G Sbjct: 178 EVRKIAEDHNLKTAHKKDSTGVCFIGERDFNAFLS--NYLLAKPGLMKTLDGQVMAEHHG 235 Query: 259 IINYTIGQRRGLG-----VAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 ++ YTIGQR+GLG V EP FV+ ++ + + VG L + E+++ Sbjct: 236 LMYYTIGQRKGLGIGGTKVGNNEPWFVIGKNQAKNELYVGQGYHHPLLYADYLLASEVSF 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYT 369 D + F C K R Q +PV V +DD + VDFE+ + GQ+ VFY Sbjct: 296 TSDHF----PPEDFTCTAKFRYRQKDIPVKVSFLSDDHLRVDFEEPVRAITPGQSVVFYK 351 Query: 370 SDSNEARVLGGGIISGSKRSD 390 + LGG I + + D Sbjct: 352 DEV----CLGGATIDAAYKDD 368 >gi|268319690|ref|YP_003293346.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus johnsonii FI9785] gi|262398065|emb|CAX67079.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus johnsonii FI9785] Length = 375 Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 137/372 (36%), Positives = 193/372 (51%), Gaps = 25/372 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++ S G C A +D D ++V Sbjct: 7 IRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDDTDDS---GVCTATEDYEDVKKVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + V F Y G TP P V CN+ +KF L L AD Sbjct: 64 DEIGIPYYSINFEKDYWERVFEYFLDEYKKGRTPNPDVMCNKEIKFKSFLDFAMDLDADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY +R V D+G M RP D +DQ+YFL +Q QL + FPL ++ K V Sbjct: 124 IAMGHYAATR--VDDNGVVH--MMRPKDGNKDQTYFLSQLSQDQLKKVIFPLANLTKPQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A GL A K DS ICF+ + + + A G +V +G+++G H G++ Sbjct: 180 REIAIASGLATAKKKDSTGICFIGERNFRKFLSEFLP--AQSGKMVTPDGKVVGEHAGLM 237 Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 YTIGQR GLG+ +P FVV D + +IV + + +Y ++ G F Sbjct: 238 YYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIV--DQGYDSKLLYATSLDASGVSFF 295 Query: 317 ---EDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACVFYTSD 371 D VD KC K R Q V V + D+ V+V+F++ V GQA VFY Sbjct: 296 TGQPDHDVD-LKCTAKFRYRQPDVGVTMHYRAKDNTVHVEFDEPARAVTPGQAIVFY--- 351 Query: 372 SNEARVLGGGII 383 N LGG I Sbjct: 352 -NGEECLGGATI 362 >gi|238789081|ref|ZP_04632870.1| tRNA-specific 2-thiouridylase mnmA [Yersinia frederiksenii ATCC 33641] gi|238722845|gb|EEQ14496.1| tRNA-specific 2-thiouridylase mnmA [Yersinia frederiksenii ATCC 33641] Length = 373 Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 130/373 (34%), Positives = 201/373 (53%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDDEEY---CSAATDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + DGK R + R +D +DQSYFL+ + +QL FP+G+++K V Sbjct: 125 IATGHYVRRQDV---DGKSR--LLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ D + R A G I+ ++GQ +G H G++ Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQPMGEHQGLM 237 Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ +P +V D N+ V+ E + + L ++++W+ Sbjct: 238 YHTLGQRKGLGIGGTKDGGDDPWYVADKDVANNILVVAQGHEHPRLMSVGLIAQQLHWVD 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 + V + F+C VK R Q +P V DD V V F++ V GQ+ VFY + Sbjct: 298 ----REPVTEAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDEPVAAVTPGQSAVFYQGE 353 Query: 372 SNEARVLGGGIIS 384 LGGGII Sbjct: 354 V----CLGGGIIE 362 >gi|269120194|ref|YP_003308371.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Sebaldella termitidis ATCC 33386] gi|268614072|gb|ACZ08440.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Sebaldella termitidis ATCC 33386] Length = 359 Score = 205 bits (522), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 135/372 (36%), Positives = 193/372 (51%), Gaps = 29/372 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVV+ MSGGVDSSV A LLK GY+VIGV ++ ++ + G C A +D D V + Sbjct: 4 RVVLGMSGGVDSSVAAILLKEQGYEVIGVFMKNWDE---TDENGVCPADEDYKDVIAVAE 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 ++V +Y ++ + + + V F Y AG TP P V CN+ +KF L ++GAD + Sbjct: 61 QLDVPYYSVNFVKEYWDRVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLDYAVKIGADYI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R D GK R + R +D +DQ+YFL +Q+QL + FP+G+ K+ +R Sbjct: 121 ATGHYARIER---DSGKVR--LLRGLDDNKDQTYFLCQLSQEQLDKVIFPIGEYNKKDIR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + L A K DS ICF+ + + + + R A G IV +G+ LG H G+++ Sbjct: 176 AIAEKYNLKTAKKKDSTGICFIGERDFAEFLNRYLP--AKPGKIVTADGENLGNHVGLMH 233 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGD 313 YTIGQR+G+G+ GEP FV D + +IV G E L + N++ Sbjct: 234 YTIGQRKGIGIGNTKDGSGEPWFVADKDLEKNELIVVQGGDHEKLYSKALIADNFNFINK 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDS 372 KC K R Q V V V++ D V F+K E V GQ V Y ++ Sbjct: 294 RELP------LKCTAKFRYRQKDVGVTVEKAGTDSYRVTFDKPEKAVTLGQIVVLYDNEE 347 Query: 373 NEARVLGGGIIS 384 LGGGII Sbjct: 348 ----CLGGGIIK 355 >gi|325684365|gb|EGD26534.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 375 Score = 205 bits (522), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 139/381 (36%), Positives = 196/381 (51%), Gaps = 29/381 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A +D D ++V Sbjct: 7 IRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TNDDGVCTATEDYEDVKKVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + V F Y AG TP P + CN +KF L L AD Sbjct: 64 DKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEIKFKSFLEYALDLDADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LA GHY ++ V ++G M RP D +DQ+YFL TQ+Q+ + FPL D+ K V Sbjct: 124 LAMGHYAKTM--VDENGVTH--MMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQDLTKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A K DS ICF+ + + + A GD+V +G+++G H G++ Sbjct: 180 RRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLP--AQGGDMVTPDGKVVGHHAGLM 237 Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 YTIGQR+GLG+ + P FVV D +++IV + + R+Y + G F Sbjct: 238 YYTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIV--EQGYDSPRLYADRLQASGMTFF 295 Query: 317 -----EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD--FEKSEVGVASGQACVFYT 369 ED FK K R Q V V V+ + D F++ V GQA V Y Sbjct: 296 TGNPEEDTE---FKATAKFRYRQCDVGVTVKYHAASKTADVYFDEPARAVTPGQALVLY- 351 Query: 370 SDSNEARVLGGGIISGSKRSD 390 N LGGG I + + D Sbjct: 352 ---NGEECLGGGNIDAAFKDD 369 >gi|256619544|ref|ZP_05476390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis ATCC 4200] gi|307276004|ref|ZP_07557137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX2134] gi|256599071|gb|EEU18247.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis ATCC 4200] gi|295113315|emb|CBL31952.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus sp. 7L76] gi|306507334|gb|EFM76471.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX2134] Length = 374 Score = 205 bits (522), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 140/371 (37%), Positives = 199/371 (53%), Gaps = 26/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D +V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y G TP P V CN+ +KF L QLGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R +D +DQ+YFL +Q QL FPLG M+K VR Sbjct: 125 ATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS +CF+ + + + + N A +G++V +G+I G+H+G++ Sbjct: 181 AIAERAGLATAKKKDSTGVCFIGEKNFKEFLS--NYLPAKKGNMVTEDGEIKGQHDGLMY 238 Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314 YTIGQR+GLG+ G EP FV+ D ++ + VG E L + E+++ D Sbjct: 239 YTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVD- 297 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV--YVDFEKSEVGVASGQACVFYTSDS 372 + F C K R Q +PV V ++DG V F++ V GQA VFY Sbjct: 298 ---TPMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFY---- 350 Query: 373 NEARVLGGGII 383 + LGGG+I Sbjct: 351 DGMECLGGGLI 361 >gi|328947275|ref|YP_004364612.1| tRNA-specific 2-thiouridylase mnmA [Treponema succinifaciens DSM 2489] gi|328447599|gb|AEB13315.1| tRNA-specific 2-thiouridylase mnmA [Treponema succinifaciens DSM 2489] Length = 406 Score = 205 bits (522), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 142/410 (34%), Positives = 207/410 (50%), Gaps = 46/410 (11%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-----NSRKASKRKGSC 67 +L+ K RVVV +SGGVDS++ A LLK G DV VT+ L+ N K SC Sbjct: 10 ELELPKKGDRVVVGLSGGVDSTMTAMLLKEKGCDVTCVTMSLWQEADLNLPDDYKIPDSC 69 Query: 68 CAGQDVYDA---RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 + ++V D R+ C + + V D +E+++ VI F Y G TP PC+ CNR + Sbjct: 70 YSPKEVEDIEENRKFCAEQGIPYVVVDVKEKYQQEVIEYFKREYRNGRTPNPCIRCNRFI 129 Query: 125 KFSDLLSVTRQLGA--DVLATGHYIRS--------RLYVGDDGKRRRIMCRP------MD 168 KF +LS + LG D TGHY ++ +Y + K R CRP +D Sbjct: 130 KFGAMLSGLKDLGIEYDYFCTGHYAKAVRGTEPLFLVYGENASKDERGKCRPVQIHTALD 189 Query: 169 LERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKY 228 + +DQ+YFL+ L +RFPL K+ + +ARE GL A+K +SQD +Y Sbjct: 190 ITKDQAYFLYRIPSAILEKVRFPLASFSKKEIFKMARERGLKAAEKEESQDFIPAPMLEY 249 Query: 229 FDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSS 288 ++ GD + L+G++LGRH GI +YTIGQRRGLGV+ PL+V +DK + Sbjct: 250 M-----FKDKPSVPGDFIDLDGKVLGRHKGIEHYTIGQRRGLGVSAPYPLYVAEIDKEKN 304 Query: 289 RVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP-----VPVFVQR 343 V++G L + ++ W D D + F VKIR + P VP Sbjct: 305 LVVLGKDSDLFCSGLIADDLVWPAD---YDPCCE-FDAMVKIRLASKPVKAHVVPYQPLE 360 Query: 344 NDD----GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389 N++ V F++ + VA GQ+ VFY + LGGGIIS + ++ Sbjct: 361 NEEFCGKSYKVVFDEPQRAVAPGQSIVFY----KDGITLGGGIISKAIKA 406 >gi|253583302|ref|ZP_04860500.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium varium ATCC 27725] gi|251833874|gb|EES62437.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium varium ATCC 27725] Length = 346 Score = 205 bits (522), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 131/366 (35%), Positives = 193/366 (52%), Gaps = 27/366 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV+ MSGGVDSSV A LLK +GY VIGVTL N +K K A Q R+C Sbjct: 5 KVVIGMSGGVDSSVAAYLLKSEGYGVIGVTL---NHKKEESLKDEIKAAQ------RICH 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H + D EE F+ VI F Y+ G TP PCV C+ VK L + + AD + Sbjct: 56 FLGIEHKIIDIEELFQKEVIDDFLEGYSQGITPSPCVICDEKVKMKILFEIADKENADFV 115 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY S + ++ K ++ D +DQSY L+ ++ L FPL +K+ +R Sbjct: 116 ATGHY--SSVEYSEEFK-TSLLKVSYDPRKDQSYMLYRLDNDKISRLLFPLHSYEKKQIR 172 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 D+A+ +GL++ +K DSQ ICF ++G Y + +KR +G + NG+ILG H G Sbjct: 173 DIAKNIGLEVYNKKDSQGICFAKEG-YIEFLKRNLGNKIKKGKYIDKNGKILGEHEGYQL 231 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW---LGDGLFED 318 YTIGQRRGLG+ + F+ +DK + + +G E L R+ L++ + D L ++ Sbjct: 232 YTIGQRRGLGLKLPRAYFITKIDKEKNEITIGEYEELYKKRVELKKYKLAVKITDILNKN 291 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + G F +S V ++ ++ +F++ A GQ V Y + VL Sbjct: 292 II--GRPRFSSFGTSGK-----VLFENEKLFFEFDEETPQTAPGQHLVLYYKN----LVL 340 Query: 379 GGGIIS 384 GGGIIS Sbjct: 341 GGGIIS 346 >gi|154496175|ref|ZP_02034871.1| hypothetical protein BACCAP_00459 [Bacteroides capillosus ATCC 29799] gi|150274730|gb|EDN01794.1| hypothetical protein BACCAP_00459 [Bacteroides capillosus ATCC 29799] Length = 342 Score = 205 bits (522), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 132/369 (35%), Positives = 191/369 (51%), Gaps = 29/369 (7%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83 ++ +SGGVDS+V A LL RD Y+V G+ L + G GQ DA V + Sbjct: 1 MLGLSGGVDSAVAAQLLSRD-YEVHGLYLDI----------GLGGTGQ--ADAAAVAHRL 47 Query: 84 NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143 ++ + D + N V PFA+ Y AG TPLPC CN TVKF LL++ ++GA+ +AT Sbjct: 48 DIPFHTADIRQELENQVCGPFAADYLAGRTPLPCARCNPTVKFPALLALAEEIGAEKVAT 107 Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 GHY R+ L DG R++ R DQSY L Q L + FPLGD +K +VR + Sbjct: 108 GHYARTAL--APDG---RVLLRKGLPANDQSYMLSRLPQNILQKVIFPLGDYEKTAVRAM 162 Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263 A + L +ADK DS +ICF+ G Y ++ + GD V +G++LGRH GI YT Sbjct: 163 AGQAELPVADKPDSMEICFIPDGDYAAWLEH-RGTVPPAGDFVDRDGRVLGRHGGIHRYT 221 Query: 264 IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLFEDAVVD 322 +GQ RGLGV+ +V +D RV++ L R+Y ++NWL DGL E Sbjct: 222 LGQGRGLGVSGPHKYYVTEIDPAHDRVVLSDGSDLMARRVYCADMNWLSVDGLPEP---- 277 Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGI 382 + V++R S+ + + + + V ++ GQ V Y D V G Sbjct: 278 -LEVTVRLRHSKTELAAVARADGENVVLEMLDPARAPTPGQLAVLYQGDI----VAASGW 332 Query: 383 ISGSKRSDA 391 I+G++R+ A Sbjct: 333 ITGAERTAA 341 >gi|153950153|ref|YP_001400589.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pseudotuberculosis IP 31758] gi|205828987|sp|A7FH61|MNMA_YERP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|152961648|gb|ABS49109.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pseudotuberculosis IP 31758] Length = 371 Score = 205 bits (522), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 130/373 (34%), Positives = 204/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDDEE---YCSAATDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGMELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 125 IATGHYVRRQDV---DGKSR--LLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ D + R A G I+ ++GQ++G+H G++ Sbjct: 180 RRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQLVGKHQGLM 237 Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGP-RESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ +P +VV D +S+ ++V E + + L ++++W+ Sbjct: 238 YHTLGQRKGLGIGGTKEGGDDPWYVVDKDLDSNTLLVAQGHEHPRLMSVGLVAQQLHWVD 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 V F+C VK R Q +P V DD V V F+ V GQ+ VFY + Sbjct: 298 ----RQPVTAPFRCVVKTRYRQQDIPCTVTPLDDERVDVRFDDPVAAVTPGQSAVFYQGE 353 Query: 372 SNEARVLGGGIIS 384 LGGGII Sbjct: 354 I----CLGGGIIE 362 >gi|148269543|ref|YP_001244003.1| tRNA-specific 2-thiouridylase MnmA [Thermotoga petrophila RKU-1] gi|166235088|sp|A5IJQ4|MNMA_THEP1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|147735087|gb|ABQ46427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermotoga petrophila RKU-1] Length = 358 Score = 205 bits (522), Expect = 9e-51, Method: Compositional matrix adjust. Identities = 131/370 (35%), Positives = 191/370 (51%), Gaps = 22/370 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL----YNSRKASKRKGSCCAGQDVYDA 76 M+V VA+SGGVDS+V LL ++G++V ++ + RK K+K CC+ D DA Sbjct: 1 MKVGVALSGGVDSAVALYLLLKEGHEVKAFHMKTKEDEFFIRKEIKKK-VCCSPSDTADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R+ + V + D +E FR VI PF S G TP PCV CNR VKF L+ Sbjct: 60 MRIAHFLGVEIEIVDVKEIFREKVIEPFKSDLLKGLTPNPCVHCNRFVKFGYLMDYVLNQ 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 G D A+GHY R + R+++ + +DL++DQSYFL ++ L FP G Sbjct: 120 GFDAFASGHYARIEF---SEKYGRKVIKKGVDLKKDQSYFLARIEPWRIERLIFPNGIYT 176 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGR 255 KE +R +A E G+ +A K +SQD+CF+ G + +K + GI L EGD++ G+++GR Sbjct: 177 KEEIRKIAEEAGIHVAKKQESQDVCFIPDGSIENFLK--DEGITLKEGDLITPEGEVVGR 234 Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H G YTIGQR+G + G +V + V+V E + + + W + Sbjct: 235 HFGYPLYTIGQRKGFKIEKFGRRYYVRGKIPEKNVVVVSDLEDVFFSGLIAEDPVWHVE- 293 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 V + FKC ++R + P V+ D+ V V FEK V GQ FY D+ Sbjct: 294 -----VPEEFKCVCRVRKKSEEAPAVVKLRDNEVEVRFEKKVFAVTPGQIAAFYDGDT-- 346 Query: 375 ARVLGGGIIS 384 +LGG II Sbjct: 347 --LLGGAIIK 354 >gi|146328716|ref|YP_001209536.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Dichelobacter nodosus VCS1703A] gi|205816915|sp|A5EVB4|MNMA_DICNV RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|146232186|gb|ABQ13164.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Dichelobacter nodosus VCS1703A] Length = 376 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 137/378 (36%), Positives = 207/378 (54%), Gaps = 26/378 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 + P+ + V MSGGVDSSV A LLK+ GYDV G+ ++ + +S G C A +D+ D Sbjct: 7 QAPQGSTIAVGMSGGVDSSVTAYLLKKQGYDVFGIFMKNWEETFSS---GYCSAAEDLED 63 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 AR VC T+++ + ++ +++ + V F Y AG TP P V CNR +KF++L +Q Sbjct: 64 ARDVCQTLDIPLHTVNFVQQYHDRVFQLFLDEYRAGRTPNPDVLCNREIKFAELALYAQQ 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD LATGHY + RL + + +D ++DQSYFL T QL FPLG + Sbjct: 124 LGADFLATGHYAQ-RL---QSDNHEAALFKGVDAQKDQSYFLHQITPAQLNKAIFPLGGL 179 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K+ VR +ARE GL DK DS ICF+ + + +++ A +G + NG+I+G Sbjct: 180 QKKQVRAIARERGLTTFDKKDSTGICFIGERPFRAFLQQYLP--AQKGLMKTPNGEIVGE 237 Query: 256 HNGIINYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGPRES-LEVHRIYLR-EI 308 H G++ YTIGQR+GLG+ EP +V+ D +++ +IVG + L HR+ + ++ Sbjct: 238 HMGLMYYTIGQRQGLGIGGIAGASEEPWYVLEKDLSNNVLIVGQGDHPLLYHRVLIAGQL 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVF 367 +WL +A + G K R Q V DG + + FE+ + + GQ V Sbjct: 298 SWL-----NEAPIAGRFYHAKTRYRQSDQKCRVDYAADGRLQLTFEQLQRAITLGQYAVI 352 Query: 368 YTSDSNEARVLGGGIISG 385 Y + R LGGG+I Sbjct: 353 YDGE----RCLGGGVIEA 366 >gi|194429520|ref|ZP_03062041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli B171] gi|194412394|gb|EDX28695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli B171] gi|323163677|gb|EFZ49499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli E128010] Length = 368 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 131/373 (35%), Positives = 205/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTATADLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G++ Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ EP +VV D +N+ V+ E + + L ++++W+ Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVD 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 F + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY--- 349 Query: 372 SNEARVLGGGIIS 384 N LGGGII Sbjct: 350 -NGEVCLGGGIIE 361 >gi|330900616|gb|EGH32035.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. japonica str. M301072PT] Length = 366 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 126/371 (33%), Positives = 196/371 (52%), Gaps = 26/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 3 RVIVGMSGGVDSSVSAVLLIEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F Y AG TP P + CNR +KF L LGAD++ Sbjct: 60 KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K VR Sbjct: 120 ATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH+G++ Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMY 232 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 +TIGQR+GLG+ A +P +V+ D +++ +IVG L + EI W+ Sbjct: 233 HTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN- 291 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + + K+R Q P +++ DG F+ + V GQ+ VFY + Sbjct: 292 ---PIDLSSPRRLTAKVRYRQGDQPCTLEKAADGYRATFDDPQRAVTPGQSVVFYDGEI- 347 Query: 374 EARVLGGGIIS 384 LGGG+I Sbjct: 348 ---CLGGGVIE 355 >gi|302554308|ref|ZP_07306650.1| tRNA methyl transferase [Streptomyces viridochromogenes DSM 40736] gi|302471926|gb|EFL35019.1| tRNA methyl transferase [Streptomyces viridochromogenes DSM 40736] Length = 376 Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 143/389 (36%), Positives = 201/389 (51%), Gaps = 28/389 (7%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAG 70 D + + +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G+ CC Sbjct: 3 DTPQRSRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 61 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 +D DARR D I + YV+D +RFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 62 EDSRDARRAADVIGIPFYVWDLADRFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALL 121 Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 LG D + TGHY +++ V +DG R + R D+ +DQSY L +QL F Sbjct: 122 DKALALGFDAVCTGHY--AQVIVHEDGTRE--LHRASDMAKDQSYVLGVLDDRQLAHAMF 177 Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVH 247 PLGD K+ +R A GL +A K DS DICF+ G + R+ EGDIV Sbjct: 178 PLGDTVTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLADRLGKA---EGDIVD 234 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 +G LG H G +TIGQR+GL + G+P +V+ + + V VGP +L+V + Sbjct: 235 ESGAKLGTHEGAFGFTIGQRKGLRIGTPAPDGKPRYVLDISPVDNTVTVGPASALDVSAL 294 Query: 304 YLREINWLGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362 + W G G + ++R+ V + D + V F + GVA G Sbjct: 295 TAVKPRWCG------VAPTGPGTYTAQLRAHGGETEVTAELVDGSLEVTFSEPVRGVAPG 348 Query: 363 QACVFYTSDSNEARVLGGGIISGSKRSDA 391 QA V Y + RV+G I+ +KR+ A Sbjct: 349 QAIVLY----DGTRVVGSATIASTKRTPA 373 >gi|22125693|ref|NP_669116.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis KIM 10] gi|45441579|ref|NP_993118.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis biovar Microtus str. 91001] gi|51596752|ref|YP_070943.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pseudotuberculosis IP 32953] gi|108807881|ref|YP_651797.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis Antiqua] gi|108812155|ref|YP_647922.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis Nepal516] gi|145599092|ref|YP_001163168.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis Pestoides F] gi|149366398|ref|ZP_01888432.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis CA88-4125] gi|162421419|ref|YP_001607233.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis Angola] gi|165925423|ref|ZP_02221255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Orientalis str. F1991016] gi|165938528|ref|ZP_02227085.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Orientalis str. IP275] gi|166008070|ref|ZP_02228968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Antiqua str. E1979001] gi|166211105|ref|ZP_02237140.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Antiqua str. B42003004] gi|167401703|ref|ZP_02307194.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421866|ref|ZP_02313619.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426312|ref|ZP_02318065.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470788|ref|ZP_02335492.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis FV-1] gi|170023961|ref|YP_001720466.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pseudotuberculosis YPIII] gi|186895819|ref|YP_001872931.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pseudotuberculosis PB1/+] gi|218928774|ref|YP_002346649.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis CO92] gi|229841625|ref|ZP_04461783.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843742|ref|ZP_04463885.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229894486|ref|ZP_04509668.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis Pestoides A] gi|229902476|ref|ZP_04517595.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis Nepal516] gi|270490345|ref|ZP_06207419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis KIM D27] gi|294504164|ref|YP_003568226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis Z176003] gi|24638321|sp|Q8ZFQ5|MNMA_YERPE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|73920130|sp|Q669Q4|MNMA_YERPS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|122980130|sp|Q1CI58|MNMA_YERPN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|123245748|sp|Q1C6S0|MNMA_YERPA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205828988|sp|B2K711|MNMA_YERPB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205828989|sp|A9R0L5|MNMA_YERPG RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205828990|sp|A4TLN3|MNMA_YERPP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205828991|sp|B1JI67|MNMA_YERPY RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|21958608|gb|AAM85367.1|AE013782_8 hypothetical protein y1799 [Yersinia pestis KIM 10] gi|45436440|gb|AAS61995.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|51590034|emb|CAH21668.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pseudotuberculosis IP 32953] gi|108775803|gb|ABG18322.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis Nepal516] gi|108779794|gb|ABG13852.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis Antiqua] gi|115347385|emb|CAL20283.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis CO92] gi|145210788|gb|ABP40195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis Pestoides F] gi|149290772|gb|EDM40847.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis CA88-4125] gi|162354234|gb|ABX88182.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis Angola] gi|165913643|gb|EDR32263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Orientalis str. IP275] gi|165922532|gb|EDR39683.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Orientalis str. F1991016] gi|165992452|gb|EDR44753.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Antiqua str. E1979001] gi|166208285|gb|EDR52765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Antiqua str. B42003004] gi|166960351|gb|EDR56372.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048808|gb|EDR60216.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054667|gb|EDR64471.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750495|gb|ACA68013.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pseudotuberculosis YPIII] gi|186698845|gb|ACC89474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pseudotuberculosis PB1/+] gi|229680522|gb|EEO76619.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis Nepal516] gi|229689350|gb|EEO81413.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229694088|gb|EEO84136.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229703505|gb|EEO90522.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis Pestoides A] gi|262362281|gb|ACY59002.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis D106004] gi|262366214|gb|ACY62771.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis D182038] gi|270338849|gb|EFA49626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis KIM D27] gi|294354623|gb|ADE64964.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis Z176003] gi|320014781|gb|ADV98352.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 371 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 130/373 (34%), Positives = 204/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDDEE---YCSAATDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGMELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 125 IATGHYVRRQDV---DGKSR--LLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ D + R A G I+ ++GQ++G+H G++ Sbjct: 180 RRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQLVGKHQGLM 237 Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGP-RESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ +P +VV D +S+ ++V E + + L ++++W+ Sbjct: 238 YHTLGQRKGLGIGGTKEGGDDPWYVVDKDLDSNTLLVAQGHEHPRLMSVGLVAQQLHWVD 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 V F+C VK R Q +P V DD V V F+ V GQ+ VFY + Sbjct: 298 ----RQPVTAPFRCVVKTRYRQQDIPCTVTPLDDERVDVRFDDPVAAVTPGQSAVFYQGE 353 Query: 372 SNEARVLGGGIIS 384 LGGGII Sbjct: 354 I----CLGGGIIE 362 >gi|295396917|ref|ZP_06807041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aerococcus viridans ATCC 11563] gi|294974851|gb|EFG50554.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aerococcus viridans ATCC 11563] Length = 378 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 138/390 (35%), Positives = 203/390 (52%), Gaps = 26/390 (6%) Query: 14 LDKNP-KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72 ++ NP K+ RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D Sbjct: 2 VENNPNKNTRVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDD---TDENGFCTATED 58 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 D V I + +Y ++E+ + + V F Y TP P V CN+ +KF L Sbjct: 59 YKDVAAVAAQIGIPYYSINFEKEYWDKVFTYFLDEYKRDRTPNPDVMCNKEIKFKAFLDY 118 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 +LGAD +ATGHY + V D K + M R +D +DQ+YFL +Q QL + FPL Sbjct: 119 ALELGADYVATGHYAQ----VERDAKGKVHMLRGLDNNKDQTYFLNQLSQDQLQRVMFPL 174 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G ++K VR +A E GL A K DS ICF+ + + + + N A G ++ +G + Sbjct: 175 GHLEKPEVRRIAEEAGLATAKKKDSTGICFIGEKNFKEFLG--NFLPAQPGKMIAEDGTV 232 Query: 253 LGRHNGIINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 +G H G++ YTIGQR+GLG+ G +P FVV D+ + + VG + L + Sbjct: 233 MGDHMGLMYYTIGQRKGLGIGGGGESDQPWFVVGKDQAKNVLYVGQGFHNDKLYADYLMA 292 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQA 364 +++++ D + F C K R Q V V N+DG + F + + GQA Sbjct: 293 SDLSFVDD----EFTATSFDCTAKFRYRQKDTQVHVDINEDGTAKITFAEPVRAITPGQA 348 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEE 394 VFY LGGG I + ++ V E Sbjct: 349 VVFYDG----PECLGGGTIDAAFKNSEVAE 374 >gi|88855226|ref|ZP_01129891.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [marine actinobacterium PHSC20C1] gi|88815754|gb|EAR25611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [marine actinobacterium PHSC20C1] Length = 375 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 132/372 (35%), Positives = 199/372 (53%), Gaps = 35/372 (9%) Query: 31 VDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTINVSHY 88 +DS+V AA G++V+GV L L + + + R G+ CC +D DA+R + I + +Y Sbjct: 1 MDSAVAAARAVEAGHEVVGVHLAL-SRQPGTLRTGARGCCTIEDSMDAQRAANIIGIPYY 59 Query: 89 VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIR 148 V+D+ ERF+ V+ F + Y+AG TP PC+ CN +KF+ LL LG D +ATGHY Sbjct: 60 VWDFSERFKLDVVDDFIAEYSAGRTPNPCMRCNERIKFAALLEKAVALGFDAVATGHYAN 119 Query: 149 SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDLAREM 207 + +D R + R +DQSY L T +QL FPLG K+ VR A E Sbjct: 120 ----IVEDENGNRELHRAAAWAKDQSYVLGVLTTEQLAHSMFPLGATPSKDEVRAEAAER 175 Query: 208 GLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 G +A+K DS DICF+ G + ++ A +G+I+ +G +LG+H G + +TIGQ Sbjct: 176 GFSVANKPDSHDICFIPDGNTRGWLADKVG---AEQGEILDRSGDVLGKHEGALAFTIGQ 232 Query: 267 RRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV- 321 R+GL V G+P FV+ + +++V+VGPRE+L + I + +W G ++ Sbjct: 233 RKGLNVGYPTDDGKPRFVLEIRPKTNQVVVGPREALALAEIAGDKYSWAGLDPLASGLIS 292 Query: 322 ---DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEK--SEV---------GVASGQACVF 367 + F+C V++R+ DP+P Q GV D + SE+ GV+ GQ V Sbjct: 293 QPGESFECHVQVRAHSDPMPAVAQVTVAGVDADGNELVSELIVTPNEPLNGVSPGQTAVL 352 Query: 368 YTSDSNEARVLG 379 Y RVLG Sbjct: 353 YVG----TRVLG 360 >gi|317181057|dbj|BAJ58843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori F32] Length = 342 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 126/370 (34%), Positives = 201/370 (54%), Gaps = 36/370 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78 M++ V +SGGVDSS A LK G++++G+ L+L+ S K D+Y +A++ Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG Sbjct: 51 ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + + + + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 111 EKIATGHYARVK-----EIDKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165 Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++ LA +G + +SQ+ICFV++ Y D +K+ + + EG + +L G+I+G Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222 Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G + YTIG+R+G V EP FVV +D + +IVG +E L H + + + D Sbjct: 223 THKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKD 282 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F++ + F+K R P V D+ + V+FE+ VA GQA V Y D Sbjct: 283 --FKNG-----EYFIKARYRSVPTKAHVSLRDEMIEVEFEEPFYAVAKGQALVVYKDDI- 334 Query: 374 EARVLGGGII 383 +LGGG+I Sbjct: 335 ---LLGGGVI 341 >gi|229545347|ref|ZP_04434072.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX1322] gi|257084787|ref|ZP_05579148.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis Fly1] gi|229309554|gb|EEN75541.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX1322] gi|256992817|gb|EEU80119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis Fly1] Length = 374 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 140/371 (37%), Positives = 198/371 (53%), Gaps = 26/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D +V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y G TP P V CN+ +KF L QLGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R +D +DQ+YFL +Q QL FPLG M+K VR Sbjct: 125 ATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS +CF+ + + + + N A +G++V G+I G+H+G++ Sbjct: 181 AIAERAGLATAKKKDSTGVCFIGEKNFKEFLS--NYLPAKKGNMVTEEGEIKGQHDGLMY 238 Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314 YTIGQR+GLG+ G EP FV+ D ++ + VG E L + E+++ D Sbjct: 239 YTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVD- 297 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV--YVDFEKSEVGVASGQACVFYTSDS 372 + F C K R Q +PV V ++DG V F++ V GQA VFY Sbjct: 298 ---TPMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFY---- 350 Query: 373 NEARVLGGGII 383 + LGGG+I Sbjct: 351 DGMECLGGGLI 361 >gi|90415927|ref|ZP_01223860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [marine gamma proteobacterium HTCC2207] gi|90332301|gb|EAS47498.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [marine gamma proteobacterium HTCC2207] Length = 370 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 126/373 (33%), Positives = 193/373 (51%), Gaps = 27/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL GY V G+ ++ ++ ++ C A D+ DA++VCD Sbjct: 6 KVIVGMSGGVDSSVAALLLMEQGYSVEGLFMKNWDEDDETEY---CTAKADLADAQQVCD 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + ++ + ++ + + V F Y AG TP P + CNR +KF L + LGAD + Sbjct: 63 KLGITLHTANFAADYWDNVFEHFLEEYRAGRTPNPDILCNREIKFKVFLDYAQILGADAI 122 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R DG+ R + + +D +DQSYFL A Q FP+G+++K VR Sbjct: 123 ATGHYTR---LAEVDGQTR--LLKGLDGNKDQSYFLHAVEQSAFAKSLFPVGELEKPEVR 177 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A E G + K DS ICF+ + ++ D +++ A G++V G ++G+H G++ Sbjct: 178 RIAEEHGFVTSTKKDSTGICFIGERRFKDFLEQYIP--AQPGEMVTPEGVVIGQHQGLMF 235 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313 YTIGQR+GLG+ + EP F + D ++R++VG L ++ INW+ Sbjct: 236 YTIGQRQGLGIGGVKNSPDEPWFTLQKDLANNRLVVGQGAQHPLLFTDQLRAEGINWI-- 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F+C K R Q V G V F+ + + GQ+ VFY +D Sbjct: 294 ---NGTPSSSFRCMAKARYRQPDQECLVTPTATGCEVLFDTPQRAITPGQSVVFYRAD-- 348 Query: 374 EARVLGGGIISGS 386 LGGGII + Sbjct: 349 --HCLGGGIIEAT 359 >gi|254241058|ref|ZP_04934380.1| tRNA methyltransferase [Pseudomonas aeruginosa 2192] gi|126194436|gb|EAZ58499.1| tRNA methyltransferase [Pseudomonas aeruginosa 2192] Length = 375 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 130/387 (33%), Positives = 203/387 (52%), Gaps = 36/387 (9%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 P+ RV+V MSGGVDSSV A LL + GY V G+ ++ ++ ++ C A +D+ DA Sbjct: 7 TPRRERVIVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWDEDDGTE---YCTAREDLADA 63 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + VCD I + + ++ + + V F + Y AG TP P + CNR +KF L L Sbjct: 64 QAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALML 123 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++ Sbjct: 124 GADLIATGHYVRRR-----DRDGRTELLKGLDPNKDQSYFLHAVGGEQIARSLFPVGELE 178 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A + GL A K DS ICF+ + ++ D +K+ A GDI G+++GRH Sbjct: 179 KPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLKQYLP--AQPGDIETTEGKVIGRH 236 Query: 257 NGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP--------RESLEVHRI 303 +G++ +TIGQR+GLG+ A +P +V+ D + ++VG +L RI Sbjct: 237 SGLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLASRI 296 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 Y W+ E + K+R Q +++ +G F++ + V GQ Sbjct: 297 Y-----WVNPVELERPR----RLRAKVRYRQSDQDCVLEKTTEGYRAVFDEPQRAVTPGQ 347 Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSD 390 + VFY D LGGG+I ++ D Sbjct: 348 SVVFYDGDV----CLGGGVIETAEAWD 370 >gi|109946881|ref|YP_664109.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter acinonychis str. Sheeba] gi|122973425|sp|Q17Z16|MNMA_HELAH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|109714102|emb|CAJ99110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter acinonychis str. Sheeba] Length = 342 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 201/370 (54%), Gaps = 36/370 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78 M++ V +SGGVDSS A LK G++++G+ L+L+ S K D+Y +A++ Sbjct: 1 MKIAVLLSGGVDSSYSAYNLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + V D+++ F++ V F S+Y G+TP PC CN +KF L +LG Sbjct: 51 ACEFLGIPLEVLDFQKDFKSVVYDAFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R ++ + + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 111 EKIATGHYARI-----EENDKVSYIREALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165 Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++ LA +G + +SQ+ICFV++ Y D +K+ + + EG + +L G+I+G Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGKIIG 222 Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G + YTIG+R+G + EP FVV +D + ++VG +E L H + + + + D Sbjct: 223 THKGYMQYTIGKRKGFNIKGALEPHFVVRIDAKKNELVVGKKEDLATHFLKAKNKSLMKD 282 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F+ + F+K R P FV D+ + V+ ++ GVA GQA V Y D Sbjct: 283 --FKSG-----EYFIKARYRSMPTKAFVSLKDEMIEVELKEPFYGVAKGQALVVYKDDI- 334 Query: 374 EARVLGGGII 383 VLGGG+I Sbjct: 335 ---VLGGGVI 341 >gi|269127770|ref|YP_003301140.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Thermomonospora curvata DSM 43183] gi|268312728|gb|ACY99102.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Thermomonospora curvata DSM 43183] Length = 358 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 147/379 (38%), Positives = 200/379 (52%), Gaps = 31/379 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 +RV+ AMSGGVDS+V AA + G+DV GV + L ++ S R G+ CC +D DARR Sbjct: 3 LRVLAAMSGGVDSAVAAARVAEAGHDVTGVHMAL-SANPRSYRTGARGCCTLEDARDARR 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D I + YV+D ERF V+ F S YAAG TP PC+ CN +KF+ LL LG Sbjct: 62 AADVIGIPFYVWDLAERFDRDVVADFVSEYAAGRTPNPCLRCNEKIKFAALLDRALALGF 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGHY R ++G ++ R +D +DQSY L T +QL FPLGD K Sbjct: 122 DAVCTGHYARW-----ENG----VLRRGVDTAKDQSYVLAVCTPEQLAHAIFPLGDTTKA 172 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVHLNGQILGRH 256 +R A GL +ADK DS DICF+ G + F + +R+ G IV GQ++G H Sbjct: 173 EIRREAERRGLAVADKPDSHDICFIADGDTRAF-LAERLGTA---PGPIVDETGQVVGEH 228 Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G YTIGQRRGL + G P +V+ + ++ V VGPRE+L+VH I WL Sbjct: 229 QGAYAYTIGQRRGLRLGRPAPDGRPRYVLDISPATNTVTVGPREALDVHEIVGERPVWLA 288 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 +C V++R+ + + + D V + + GVA GQA V Y D Sbjct: 289 -----PPPAGPHECQVQLRAHGEVYDCTAEADGDRVRIRLHEPARGVARGQAAVLYDGD- 342 Query: 373 NEARVLGGGIISGSKRSDA 391 RV+G I+ + R A Sbjct: 343 ---RVIGSSTIALTSRVPA 358 >gi|315185969|gb|EFU19733.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Spirochaeta thermophila DSM 6578] Length = 376 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 128/363 (35%), Positives = 185/363 (50%), Gaps = 15/363 (4%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72 D+ + R+VVAMSGGVDSSV A LL G +V+G+T N+ +G ++ Sbjct: 13 DIRDTRRPRRLVVAMSGGVDSSVTAHLLLSAGIEVVGLTFIRVNTPAEVDHEGFS---EE 69 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 AR V + + H+V + + + + V+ Y +G TP PCV CNRT+KF L+ Sbjct: 70 ARAAREVASHLGIEHHVLNLHDLYTSRVLRRAWEEYRSGRTPNPCVLCNRTLKFGHLVRY 129 Query: 133 TRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 R+ L AD +ATGHY +R+YV +G + R ++QSYFL T + L FP Sbjct: 130 AREVLRADGIATGHY--ARIYVDAEGCVH--LLRGKAGTKEQSYFLAQTRPEDLRHAYFP 185 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYF-DVVKRINAGIALEGDIVHLNG 250 LGD K +R AR G+ A++ +SQD+CF G F + ++ G I+ G Sbjct: 186 LGDQTKNEIRTYARHHGIPTAERPESQDVCFNTTGLRFGEFLQEFFEEGGESGPILDERG 245 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE-IN 309 +LGRH GI +TIGQRRGLGVA+G P++V +D + VIV RE +HR+ +N Sbjct: 246 NVLGRHRGIHVFTIGQRRGLGVALGRPVYVKAIDPERNAVIVTDREEALLHRVVEAAGVN 305 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 W F + +IR + P + D + V F + + V GQ V Y Sbjct: 306 W-----FAPPPPRPMEVLAQIRYAHRAAPAVLTHEGDRIRVRFHEPQRAVTPGQLLVAYV 360 Query: 370 SDS 372 D Sbjct: 361 GDE 363 >gi|229549592|ref|ZP_04438317.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis ATCC 29200] gi|255972288|ref|ZP_05422874.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis T1] gi|256956522|ref|ZP_05560693.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis DS5] gi|256963413|ref|ZP_05567584.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis HIP11704] gi|300860987|ref|ZP_07107074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TUSoD Ef11] gi|307272736|ref|ZP_07553983.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0855] gi|312951194|ref|ZP_07770097.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0102] gi|229305257|gb|EEN71253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis ATCC 29200] gi|255963306|gb|EET95782.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis T1] gi|256947018|gb|EEU63650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis DS5] gi|256953909|gb|EEU70541.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis HIP11704] gi|300850026|gb|EFK77776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TUSoD Ef11] gi|306510350|gb|EFM79373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0855] gi|310630859|gb|EFQ14142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0102] gi|315034636|gb|EFT46568.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0027] gi|315143340|gb|EFT87356.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX2141] gi|315152679|gb|EFT96695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0031] gi|315159473|gb|EFU03490.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0312] gi|315161320|gb|EFU05337.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0645] gi|323481203|gb|ADX80642.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis 62] Length = 374 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 140/371 (37%), Positives = 199/371 (53%), Gaps = 26/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D +V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y G TP P V CN+ +KF L QLGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R +D +DQ+YFL +Q QL FPLG M+K VR Sbjct: 125 ATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS +CF+ + + + + N A +G++V +G+I G+H+G++ Sbjct: 181 AIADRAGLATAKKKDSTGVCFIGEKNFKEFLS--NYLPAKKGNMVTEDGEIKGQHDGLMY 238 Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314 YTIGQR+GLG+ G EP FV+ D ++ + VG E L + E+++ D Sbjct: 239 YTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVD- 297 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV--YVDFEKSEVGVASGQACVFYTSDS 372 + F C K R Q +PV V ++DG V F++ V GQA VFY Sbjct: 298 ---TPMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFY---- 350 Query: 373 NEARVLGGGII 383 + LGGG+I Sbjct: 351 DGMECLGGGLI 361 >gi|257082170|ref|ZP_05576531.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis E1Sol] gi|256990200|gb|EEU77502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis E1Sol] Length = 374 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 140/371 (37%), Positives = 199/371 (53%), Gaps = 26/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D +V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y G TP P V CN+ +KF L QLGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAIQLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R +D +DQ+YFL +Q QL FPLG M+K VR Sbjct: 125 ATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS +CF+ + + + + N A +G++V +G+I G+H+G++ Sbjct: 181 AIAERAGLATAKKKDSTGVCFIGEKNFKEFLS--NYLPAKKGNMVTEDGEIKGQHDGLMY 238 Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314 YTIGQR+GLG+ G EP FV+ D ++ + VG E L + E+++ D Sbjct: 239 YTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVD- 297 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV--YVDFEKSEVGVASGQACVFYTSDS 372 + F C K R Q +PV V ++DG V F++ V GQA VFY Sbjct: 298 ---TPMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFY---- 350 Query: 373 NEARVLGGGII 383 + LGGG+I Sbjct: 351 DGMECLGGGLI 361 >gi|313123455|ref|YP_004033714.1| tRNA-specific 2-thiouridylase mnma [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280018|gb|ADQ60737.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 375 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 139/381 (36%), Positives = 196/381 (51%), Gaps = 29/381 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A +D D ++V Sbjct: 7 IRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TNDDGVCTATEDYEDVKKVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + V F Y AG TP P + CN +KF L L AD Sbjct: 64 DKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEIKFKSFLEYALALDADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LA GHY ++ V ++G M RP D +DQ+YFL TQ+Q+ + FPL D+ K V Sbjct: 124 LAMGHYAKTM--VDENGVTH--MMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQDLTKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A K DS ICF+ + + + A GD+V +G+++G H G++ Sbjct: 180 RRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLP--AQGGDMVTPDGKVVGHHAGLM 237 Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 YTIGQR+GLG+ + P FVV D +++IV + + R+Y + G F Sbjct: 238 YYTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIV--EQGYDSPRLYADRLQASGMTFF 295 Query: 317 -----EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD--FEKSEVGVASGQACVFYT 369 ED FK K R Q V V V+ + D F++ V GQA V Y Sbjct: 296 TGNPEEDTE---FKATAKFRYRQCDVGVTVKYHAASKTADVYFDEPARAVTPGQALVLY- 351 Query: 370 SDSNEARVLGGGIISGSKRSD 390 N LGGG I + + D Sbjct: 352 ---NGEECLGGGNIDDAFKDD 369 >gi|251793304|ref|YP_003008032.1| tRNA-specific 2-thiouridylase MnmA [Aggregatibacter aphrophilus NJ8700] gi|247534699|gb|ACS97945.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aggregatibacter aphrophilus NJ8700] Length = 384 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 128/388 (32%), Positives = 213/388 (54%), Gaps = 29/388 (7%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 +L++ L +N +V+ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 12 AKLSAEQLAQNATK-KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY--- 67 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 68 CTAAADLEDAQAVCDKLGIKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKEIKF 127 Query: 127 SDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 L + LGA+ +ATGHY+R R DD + + R +D +DQSYFL+ + +Q+ Sbjct: 128 KAFLEYAAEDLGANYIATGHYVRRR--GADDNAQ---LLRGLDTNKDQSYFLYTLSTKQV 182 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+GD+ K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 183 GQSLFPVGDIAKPIVRAIAEDLGLVTAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 240 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RES 297 ++G I+GRH+G++ +T+GQR+GLG+ A E +VV D ++ +IV + Sbjct: 241 RTVDGDIIGRHDGLMYHTLGQRKGLGIGGVKGASEEAWYVVEKDLVNNELIVAQGHDHSA 300 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSE 356 L + ++++W+ + + +C VK R Q VP ++ +D+ + V F++ + Sbjct: 301 LLSTGLIAQQLHWVD----RQPIRESLRCTVKTRYRQTDVPCIIEPIDDESIKVIFDEPQ 356 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384 + V GQ+ VFY ++ LGGGII Sbjct: 357 IAVTPGQSAVFYLNEV----CLGGGIIE 380 >gi|145298399|ref|YP_001141240.1| tRNA-specific 2-thiouridylase MnmA [Aeromonas salmonicida subsp. salmonicida A449] gi|166234842|sp|A4SKS0|MNMA_AERS4 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|142851171|gb|ABO89492.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] Length = 368 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 123/373 (32%), Positives = 200/373 (53%), Gaps = 27/373 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 ++V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A QD+ DA+ VC Sbjct: 7 IKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDTDE---YCSASQDLADAKAVC 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGAD 139 D + + + ++ + + V F Y AG TP P + CN+ +KF L +LGA Sbjct: 64 DKLGMKLHTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEELGAT 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R DD + R +D +DQSYFL+ +++Q+ FP+GD++K Sbjct: 124 YIATGHYVRR-----DDSTGHPRLLRGLDSNKDQSYFLYTLSEKQVGQSLFPVGDLEKPE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++ L A K DS ICF+ + K+ D + + A G I ++G+++G H G+ Sbjct: 179 VRRIAEQLDLITAKKKDSTGICFIGERKFKDFLAKFLP--AQPGPIETVDGKVIGEHQGL 236 Query: 260 INYTIGQRRGLGV-----AMGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 + +T+GQR+GLG+ A E +VV +++N+ V G L + +++W+ Sbjct: 237 MYHTLGQRKGLGIGGRKDATEEAWYVVDKEVERNTLVVAQGEHPRLYSDGLIASQLHWVD 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 + +C VK R Q +P +Q +D+ + V F++ + V GQ+ VFY + Sbjct: 297 ----RTPIRAPRRCTVKTRYRQQDIPCLIQPIDDETIRVIFDEKQAAVTPGQSAVFYDGE 352 Query: 372 SNEARVLGGGIIS 384 LGGGII Sbjct: 353 V----CLGGGIIE 361 >gi|300361472|ref|ZP_07057649.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus gasseri JV-V03] gi|300354091|gb|EFJ69962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus gasseri JV-V03] Length = 383 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 195/372 (52%), Gaps = 25/372 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++ S G C A +D D ++V Sbjct: 15 IRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDDTDDS---GVCTATEDYEDVKKVA 71 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + V F + Y G TP P V CN+ +KF L L AD Sbjct: 72 DEIGIPYYSINFEKDYWERVFEYFLNEYKKGRTPNPDVMCNKEIKFKSFLDFAMDLDADY 131 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY ++ V ++G M RP D +DQ+YFL +Q QL + FPL ++ K V Sbjct: 132 IAMGHYAATK--VDENGIVH--MMRPKDGNKDQTYFLSQLSQDQLKKVIFPLANLTKPQV 187 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A GL A K DS ICF+ + + + A G +V +G+++G H G++ Sbjct: 188 REIAIAAGLATAKKKDSTGICFIGERNFRKFLSEFLP--AQSGKMVTPDGKVVGEHAGLM 245 Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 YTIGQR GLG+ +P FVV D + +IV + + +Y ++ G F Sbjct: 246 YYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSKLLYATSLDASGVSFF 303 Query: 317 ---EDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSD 371 D +D KC K R Q V V + + D+ V+V+F++ V GQA VFY Sbjct: 304 TGLPDHDID-LKCTAKFRYRQPDVGVTMHYHAKDNTVHVEFDEPARAVTPGQAIVFY--- 359 Query: 372 SNEARVLGGGII 383 N LGG I Sbjct: 360 -NGEECLGGATI 370 >gi|199598161|ref|ZP_03211583.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, PP-loop ATPase [Lactobacillus rhamnosus HN001] gi|199590922|gb|EDY99006.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, PP-loop ATPase [Lactobacillus rhamnosus HN001] Length = 377 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 134/375 (35%), Positives = 188/375 (50%), Gaps = 25/375 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A D D +V Sbjct: 10 NTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDVAKV 66 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 I + +Y ++E+ + + V F Y AG TP P V CN+ +KF L QL AD Sbjct: 67 ASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQLNAD 126 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +A GHY + V D + M R D +DQ+YFL +Q QL FP+G ++K Sbjct: 127 YIAMGHYAQ----VKTDEQGVVHMLRGADGNKDQTYFLSQLSQDQLKKSMFPIGHLQKPE 182 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A GL A K DS ICF+ + + + A G ++ ++G G H+G+ Sbjct: 183 VRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEKGTHDGL 240 Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 + YTIGQR+GLG+ EP FVV D + + + VG +L + +NW Sbjct: 241 MYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTT 300 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371 +A VDG K R Q V + +DDG VDF+ + GQA VFY + Sbjct: 301 G----EAPVDGTHMTAKFRYRQRDTGVTIHYHDDGTATVDFDVPVRAITPGQAVVFYDGE 356 Query: 372 SNEARVLGGGIISGS 386 LGGG I + Sbjct: 357 ----ECLGGGTIDAA 367 >gi|291288175|ref|YP_003504991.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Denitrovibrio acetiphilus DSM 12809] gi|290885335|gb|ADD69035.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Denitrovibrio acetiphilus DSM 12809] Length = 344 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 125/366 (34%), Positives = 195/366 (53%), Gaps = 30/366 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++AMSGGVDS++ A ++K GYDVIG T++ ++ + + ++D + Sbjct: 4 KVLIAMSGGVDSTLTAHIMKEKGYDVIGCTIKFFDEQTEA-----------LHDGEKAAK 52 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + Y DY + F+ VI F +Y G TP PC CNR KF+ L + GA + Sbjct: 53 ELGIDWYYADYTDYFKEDVISYFIRTYIQGRTPNPCAHCNRHAKFNYLFREMKSKGATKI 112 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY ++ VG+ + + D+ +DQSY+L Q + FPLG+M+K V+ Sbjct: 113 ATGHYA-GKVKVGE----KYFFKKGQDVRKDQSYYLCLLKDHQREVIEFPLGEMEKTDVK 167 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHLNGQILGRHNGII 260 A E+GL +ADK +SQDICF++ G Y D ++ +I+ +G + +G+ H GII Sbjct: 168 AKAAELGLSVADKDESQDICFLKGGDYRDFLESKIDKDSIKKGWFIK-DGEKFKEHEGII 226 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQR+GLG+ EPLFV ++D S +I+G ++ + + + D +F D Sbjct: 227 YYTIGQRKGLGIGYHEPLFVKHIDAESGNIILGNKDEVTGTGVKVH------DFVFPDDH 280 Query: 321 VDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ-ACVFYTSDSNEARVL 378 F+ VK+R PVP V+ + + F++ E GQ ACV+ N+ Sbjct: 281 DRVFRAEVKVRYRMAPVPCMVEIHPGNTATILFDRPEFAPTPGQIACVY----ENDLVTC 336 Query: 379 GGGIIS 384 GG I S Sbjct: 337 GGYIES 342 >gi|328675274|gb|AEB27949.1| Putative tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Francisella cf. novicida 3523] Length = 358 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 132/371 (35%), Positives = 203/371 (54%), Gaps = 26/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ VCD Sbjct: 4 KVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDE---FCSAEQDIADAQAVCD 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +I + ++ + + V F + Y AG TP P + CN+ +KF LS LG D + Sbjct: 61 SIGIPFKKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGDYI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY ++R DG + + + +D +DQ+YFL+ Q+QL FP+G+++K VR Sbjct: 121 ATGHYAQTRQAA--DGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNVEKSKVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A+E L DK DS ICF+ + K+ + + + A +G+I NG +G H+G++ Sbjct: 177 EIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDGLMY 234 Query: 262 YTIGQRRGLGVAMGE-----PLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINWLGD 313 YTIGQR+GLG+ + P F D N+ + V + + + L+ E++W+ Sbjct: 235 YTIGQRQGLGIGGVKNRPEVPWFAAKKDLANNVLIAVQGHDHPLLFKQSLQAIELSWVA- 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 G+ A F+C K+R Q V+ N DG V V F++ + + GQ+ VFY D Sbjct: 294 GM---APAGKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDEPQRAITPGQSVVFYIDDV 350 Query: 373 NEARVLGGGII 383 LGGGII Sbjct: 351 ----CLGGGII 357 >gi|116629824|ref|YP_814996.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, PP-loop ATPase [Lactobacillus gasseri ATCC 33323] gi|116095406|gb|ABJ60558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus gasseri ATCC 33323] Length = 383 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 133/373 (35%), Positives = 197/373 (52%), Gaps = 25/373 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 ++RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++ S G C A +D D ++V Sbjct: 14 EIRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDDTDDS---GVCTATEDYEDVKKV 70 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + +Y ++E+ + V F + Y G TP P V CN+ +KF L L AD Sbjct: 71 ADEIGIPYYSINFEKDYWERVFEYFLNEYKKGRTPNPDVMCNKEIKFKSFLDFAMDLDAD 130 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +A GHY ++ V ++G M RP D +DQ+YFL +Q QL + FPL ++ K Sbjct: 131 YIAMGHYAATK--VDENGIVH--MMRPKDGNKDQTYFLSQLSQDQLKKVIFPLANLTKPQ 186 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A + GL A K DS ICF+ + + + A G +V +G+++G H G+ Sbjct: 187 VREIAIDAGLATAKKKDSTGICFIGERNFKKFLSEFLP--AQSGKMVTPDGKVVGEHAGL 244 Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 + YTIGQR GLG+ +P FVV D + +IV + + +Y ++ G Sbjct: 245 MYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSKLLYATSLDASGVSF 302 Query: 316 F---EDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTS 370 F + +D KC K R Q V V + + D+ V+V+F++ V GQA VFY Sbjct: 303 FTGQPEHDID-LKCTAKFRYRQPDVGVTMHYHAKDNTVHVEFDEPARAVTPGQAIVFY-- 359 Query: 371 DSNEARVLGGGII 383 N LGG I Sbjct: 360 --NGEECLGGATI 370 >gi|15597822|ref|NP_251316.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa PAO1] gi|107102147|ref|ZP_01366065.1| hypothetical protein PaerPA_01003197 [Pseudomonas aeruginosa PACS2] gi|116050613|ref|YP_790568.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa UCBPP-PA14] gi|14195276|sp|Q9I0L2|MNMA_PSEAE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|122259736|sp|Q02NB8|MNMA_PSEAB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|9948693|gb|AAG06014.1|AE004691_5 tRNA methyltransferase [Pseudomonas aeruginosa PAO1] gi|115585834|gb|ABJ11849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas aeruginosa UCBPP-PA14] Length = 375 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 130/387 (33%), Positives = 203/387 (52%), Gaps = 36/387 (9%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 P+ RV+V MSGGVDSSV A LL + GY V G+ ++ ++ ++ C A +D+ DA Sbjct: 7 TPRRERVIVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWDEDDGTE---YCTAREDLADA 63 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + VCD I + + ++ + + V F + Y AG TP P + CNR +KF L L Sbjct: 64 QAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALML 123 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++ Sbjct: 124 GADLIATGHYVRRR-----DRDGRTELLKGLDPNKDQSYFLHAVGGEQIARSLFPVGELE 178 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A + GL A K DS ICF+ + ++ D +K+ A GDI G+++GRH Sbjct: 179 KPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLKQYLP--AQPGDIETTEGKVIGRH 236 Query: 257 NGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP--------RESLEVHRI 303 +G++ +TIGQR+GLG+ A +P +V+ D + ++VG +L RI Sbjct: 237 SGLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLASRI 296 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 Y W+ E + K+R Q +++ +G F++ + V GQ Sbjct: 297 Y-----WVNPVELERPR----RLRAKVRYRQSDQDCVLEKTAEGYRAVFDEPQRAVTPGQ 347 Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSD 390 + VFY D LGGG+I ++ D Sbjct: 348 SVVFYDGDV----CLGGGVIETAEAWD 370 >gi|146307422|ref|YP_001187887.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas mendocina ymp] gi|205816890|sp|A4XUY9|MNMA_PSEMY RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|145575623|gb|ABP85155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas mendocina ymp] Length = 370 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 128/380 (33%), Positives = 203/380 (53%), Gaps = 26/380 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 + P RV+V MSGGVDSSV A LL GY V G+ ++ ++ ++ C A D+ D Sbjct: 2 QAPSTQRVIVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWDEDDGTE---YCTAMDDLAD 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ VCD I + + ++ + + V F + Y AG TP P + CNR +KF L Sbjct: 59 AQAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALS 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G++ Sbjct: 119 LGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFPVGEL 173 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + L A K DS ICF+ + ++ D +K+ A GDI GQ++GR Sbjct: 174 EKPQVRAIAEKYELATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGDIETTEGQVIGR 231 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 H+G++ +TIGQR+GLG+ A +P +V+ D + +IVG + E ++ R + Sbjct: 232 HHGLMYHTIGQRQGLGIGGLKDASDDPWYVLRKDLTRNVLIVG--QGNEHPWLFSRAL-- 287 Query: 311 LGDGLFEDAVVD---GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 L ++ VD + K+R Q +++ ++G F++ + V GQ+ VF Sbjct: 288 LASDIYWVNPVDLSTPRRLTAKVRYRQSDQACTLEKTENGYRAVFDEPQRAVTPGQSVVF 347 Query: 368 YTSDSNEARVLGGGIISGSK 387 Y + LGGG+I ++ Sbjct: 348 YDGEV----CLGGGVIETAQ 363 >gi|325273429|ref|ZP_08139681.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas sp. TJI-51] gi|324101442|gb|EGB99036.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas sp. TJI-51] Length = 374 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 129/380 (33%), Positives = 203/380 (53%), Gaps = 26/380 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+P RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ D Sbjct: 7 KDPAKTRVIVGMSGGVDSSVSALLLIEQGYQVEGLFMKNWEEDDGTE---YCTAREDLAD 63 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ VCD I + + ++ + + V F Y AG TP P + CNR +KF L Sbjct: 64 AQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALS 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD++ATGHY+R R D G ++ + +D +DQSYFL A +++ FP+G++ Sbjct: 124 LGADLIATGHYVRRR----DTGAVTELL-KGLDPNKDQSYFLHAVGGKEIARTLFPVGEL 178 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + GL A K DS ICF+ + ++ D +K+ A G+I G+++GR Sbjct: 179 EKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGNIETTEGEVIGR 236 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 H+G++ +TIGQR+GLG+ A EP +V++ D + ++VG + E ++ R + Sbjct: 237 HHGLMYHTIGQRQGLGIGGLKDAGDEPWYVLHKDLTRNVLVVG--QGNEHPWLFSRAL-- 292 Query: 311 LGDGLFEDAVVD---GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 L +F VD + K+R Q + D G F++ + V GQ+ VF Sbjct: 293 LASEIFWVNSVDLSSPRQLTAKVRYRQSDQRCTLALTDGGYRAVFDEPQRAVTPGQSVVF 352 Query: 368 YTSDSNEARVLGGGIISGSK 387 Y + LGGG+I ++ Sbjct: 353 YDGEV----CLGGGVIEAAE 368 >gi|113461819|ref|YP_719888.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus somnus 129PT] gi|123327501|sp|Q0I5Y6|MNMA_HAES1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|112823862|gb|ABI25951.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus somnus 129PT] Length = 383 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 128/387 (33%), Positives = 210/387 (54%), Gaps = 29/387 (7%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +L SL++ KN K +V+ MSGGVDSSV A +L++ GY V G+ ++ + + C Sbjct: 12 KLTSLEIAKNSKK-KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 67 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 68 TAANDLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFK 127 Query: 128 DLLS-VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L LGAD +ATGHY+R D + + R +D +DQSYFL+ ++ Q+ Sbjct: 128 AFLEYAVEDLGADYIATGHYVRR-----SDVNGQTKLLRGLDSNKDQSYFLYTLSKDQVA 182 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 FP+G+++K VR +A ++GL A K DS ICF+ + K+ + + R A G+I Sbjct: 183 QSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKEFLARFLP--AQPGEIR 240 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298 ++G+++G+H+G++ YT+GQR+GLG+ +P +VV D ++ ++V +L Sbjct: 241 MVDGKVIGKHDGLMYYTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGNDNSAL 300 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEV 357 + ++ W+ D L + +C VK R QD + NDD V V F++ ++ Sbjct: 301 LSQGLIATQLYWV-DRL---PIRQNLRCTVKTRYRQQDIACEVIPLNDDCVEVRFDEPQI 356 Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGG+I Sbjct: 357 AVTPGQSAVFYQGE----ECLGGGVIE 379 >gi|328473137|gb|EGF43985.1| tRNA-specific 2-thiouridylase MnmA [Vibrio parahaemolyticus 10329] Length = 374 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 125/375 (33%), Positives = 203/375 (54%), Gaps = 28/375 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + + C A +D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R ++G++ + M R +D +DQSYFL+ + +Q+ FP+GD++K V Sbjct: 125 IAMGHYVRRSF--PENGEKPQ-MLRGLDSNKDQSYFLYTLSHEQVARSLFPVGDLEKPEV 181 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A K DS ICF+ + K+ + + R A G+I G+++G+H G++ Sbjct: 182 RRIAEEQGLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGKHQGLM 239 Query: 261 NYTIGQRRGLGVAMG-------EPLFVVY--LDKNSSRVIVGP-RESLEVHRIYLREINW 310 +T+GQR+GL + +P FV LD+N + G L+ + +++W Sbjct: 240 YHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLDRNVLIAVQGKDHPMLKSEGLLASQLHW 299 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + + D KC VK R Q +P + +D+ + V F++ ++ V GQ+ VFY Sbjct: 300 VD----REPIRDVMKCTVKTRYRQQDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAVFYK 355 Query: 370 SDSNEARVLGGGIIS 384 D LGGGII Sbjct: 356 DDV----CLGGGIIE 366 >gi|238783798|ref|ZP_04627817.1| tRNA-specific 2-thiouridylase mnmA [Yersinia bercovieri ATCC 43970] gi|238715349|gb|EEQ07342.1| tRNA-specific 2-thiouridylase mnmA [Yersinia bercovieri ATCC 43970] Length = 373 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 129/375 (34%), Positives = 203/375 (54%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEEY---CSAATDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGMELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + +GK R + R +D +DQSYFL+ + +QL FP+G+++K V Sbjct: 125 IATGHYVRRQDV---NGKSR--LLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ D + R A G I+ ++GQ +G H G++ Sbjct: 180 RRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHVGEHQGLM 237 Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREINW 310 +T+GQR+GLG+ +P +VV DK+ + I+ + E R+ ++++W Sbjct: 238 YHTLGQRKGLGIGGTKDGGDDPWYVV--DKDVANNILLVAQGHEHPRLMSVGLIAQQLHW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + + F+C VK R Q +P V +DD V V F+ V GQ+ VFY Sbjct: 296 VD----RQPITAAFRCVVKTRYRQQDIPCTVTPLDDDRVEVRFDNPVAAVTPGQSAVFYQ 351 Query: 370 SDSNEARVLGGGIIS 384 ++ LGGGII Sbjct: 352 AEV----CLGGGIIE 362 >gi|257416449|ref|ZP_05593443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis AR01/DG] gi|257158277|gb|EEU88237.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis ARO1/DG] Length = 374 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 140/371 (37%), Positives = 198/371 (53%), Gaps = 26/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D +V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y G TP P V CN+ +KF L QLGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R +D +DQ+YFL +Q QL FPLG M K VR Sbjct: 125 ATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMGKSEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS +CF+ + + + + N A +G++V +G+I G+H+G++ Sbjct: 181 AIAERAGLATAKKKDSTGVCFIGEKNFKEFLS--NYLPAKKGNMVTEDGEIKGQHDGLMY 238 Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314 YTIGQR+GLG+ G EP FV+ D ++ + VG E L + E+++ D Sbjct: 239 YTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVD- 297 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV--YVDFEKSEVGVASGQACVFYTSDS 372 + F C K R Q +PV V ++DG V F++ V GQA VFY Sbjct: 298 ---TPMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFY---- 350 Query: 373 NEARVLGGGII 383 + LGGG+I Sbjct: 351 DGMECLGGGLI 361 >gi|152965276|ref|YP_001361060.1| tRNA-specific 2-thiouridylase MnmA [Kineococcus radiotolerans SRS30216] gi|151359793|gb|ABS02796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Kineococcus radiotolerans SRS30216] Length = 359 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 143/371 (38%), Positives = 187/371 (50%), Gaps = 27/371 (7%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84 MSGGVDS+V AA G++V+GV + L N + R GS CC +D DARR D + Sbjct: 1 MSGGVDSAVAAARAVDAGHEVVGVHMAL-NRSPGTLRTGSRGCCTIEDALDARRAADLLG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV+D E F V+ F + YAAG TP PCV CN +KF+ LL LG D +ATG Sbjct: 60 IPFYVWDLSEDFVEDVVADFVAEYAAGRTPNPCVRCNERIKFAALLDKGIALGFDAVATG 119 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDL 203 HY +R+ G DG R + R D +DQSY L Q+ FPLGD K VR Sbjct: 120 HY--ARVVTGPDG--RAELHRAADAAKDQSYVLAVLDADQVAHAMFPLGDAPTKAEVRAE 175 Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263 A GL +A K DS DICF+ G + + G++V +G++LG H G YT Sbjct: 176 AERRGLPVASKPDSHDICFIPDGDTRGFLADKLGEV--PGEVVDESGEVLGTHTGTYGYT 233 Query: 264 IGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +GQR+GLG+ A G P +V+ ++ V VGP E L V + E W DA Sbjct: 234 VGQRKGLGISRPAADGRPRYVLSIEPVRRTVTVGPAERLSVGALEAVEAVW-----NADA 288 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRN---DDGVY-VDFEKSEVGVASGQACVFYTSDSNEA 375 V + V++R+ +PVP + DD V V GVA GQ Y Sbjct: 289 PVGPVEVHVQVRAHGEPVPAVAELTGPADDPVLRVRLRTPLSGVAPGQTVAVYRG----T 344 Query: 376 RVLGGGIISGS 386 RVLG ISG+ Sbjct: 345 RVLGSATISGT 355 >gi|282851667|ref|ZP_06261032.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus gasseri 224-1] gi|311110534|ref|ZP_07711931.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus gasseri MV-22] gi|205822450|sp|Q042R4|MNMA_LACGA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|282557635|gb|EFB63232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus gasseri 224-1] gi|311065688|gb|EFQ46028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus gasseri MV-22] Length = 375 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 133/373 (35%), Positives = 197/373 (52%), Gaps = 25/373 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 ++RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++ S G C A +D D ++V Sbjct: 6 EIRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDDTDDS---GVCTATEDYEDVKKV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + +Y ++E+ + V F + Y G TP P V CN+ +KF L L AD Sbjct: 63 ADEIGIPYYSINFEKDYWERVFEYFLNEYKKGRTPNPDVMCNKEIKFKSFLDFAMDLDAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +A GHY ++ V ++G M RP D +DQ+YFL +Q QL + FPL ++ K Sbjct: 123 YIAMGHYAATK--VDENGIVH--MMRPKDGNKDQTYFLSQLSQDQLKKVIFPLANLTKPQ 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A + GL A K DS ICF+ + + + A G +V +G+++G H G+ Sbjct: 179 VREIAIDAGLATAKKKDSTGICFIGERNFKKFLSEFLP--AQSGKMVTPDGKVVGEHAGL 236 Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 + YTIGQR GLG+ +P FVV D + +IV + + +Y ++ G Sbjct: 237 MYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSKLLYATSLDASGVSF 294 Query: 316 F---EDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTS 370 F + +D KC K R Q V V + + D+ V+V+F++ V GQA VFY Sbjct: 295 FTGQPEHDID-LKCTAKFRYRQPDVGVTMHYHAKDNTVHVEFDEPARAVTPGQAIVFY-- 351 Query: 371 DSNEARVLGGGII 383 N LGG I Sbjct: 352 --NGEECLGGATI 362 >gi|127512489|ref|YP_001093686.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella loihica PV-4] gi|166235081|sp|A3QD79|MNMA_SHELP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|126637784|gb|ABO23427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella loihica PV-4] Length = 371 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 129/382 (33%), Positives = 198/382 (51%), Gaps = 32/382 (8%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ NP +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A +D+ Sbjct: 4 IEPNPNGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDTDEY---CAAAEDL 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 61 KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 120 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 L AD +A GHY+R D + M R +D +DQSYFL+ + +Q+ FP+ Sbjct: 121 DDILDADYIAMGHYVRRS-----DASGQSQMLRGVDGNKDQSYFLYTLSHEQIARSLFPV 175 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR++A+EMGL DK DS ICF+ + K+ D ++ A G I G++ Sbjct: 176 GELEKSEVREIAKEMGLVTHDKKDSTGICFIGERKFTDFLRTFLP--AQPGKIETAEGEV 233 Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHR 302 +G H G++ +T+GQR+GLG+ + +P +VV D + ++VG PR L Sbjct: 234 IGEHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLVVGQGGKHPR--LMSVG 291 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVAS 361 Y +++W+ DG K VK R QD DD + V F++ V Sbjct: 292 FYADQLHWVD----RTGPNDGAKITVKTRYRQQDVACTLTYEGDDRIKVIFDEPVAAVTP 347 Query: 362 GQACVFYTSDSNEARVLGGGII 383 GQ+ VFY + LGGGII Sbjct: 348 GQSAVFYDGEV----CLGGGII 365 >gi|116513846|ref|YP_812752.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275384|sp|Q04B58|MNMA_LACDB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|116093161|gb|ABJ58314.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125503|gb|ADY84833.1| Probable tRNA-methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 375 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 140/381 (36%), Positives = 195/381 (51%), Gaps = 29/381 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A +D D ++V Sbjct: 7 IRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TNDDGVCTATEDYEDVKKVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + V F Y AG TP P + CN VKF L L AD Sbjct: 64 DKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEVKFKSFLEYALDLDADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LA GHY ++ V ++G M RP D +DQ+YFL TQ+Q+ + FPL D+ K V Sbjct: 124 LAMGHYAKTM--VDENGVTH--MMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQDLTKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A K DS ICF+ + + + A GD+V +G+++G H G++ Sbjct: 180 RRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLP--AQGGDMVTPDGKVVGHHAGLM 237 Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 YTIGQR+GLG+ + P FVV D +++IV + + R+Y + G F Sbjct: 238 YYTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIV--EQGYDSPRLYADRLQASGMTFF 295 Query: 317 -----EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD--FEKSEVGVASGQACVFYT 369 ED FK K R Q V V V+ D F++ V GQA V Y Sbjct: 296 TGNPEEDTE---FKATAKFRYRQCDVGVTVKYYAASKTADVYFDEPARAVTPGQALVLY- 351 Query: 370 SDSNEARVLGGGIISGSKRSD 390 N LGGG I + + D Sbjct: 352 ---NGEECLGGGNIDAAFKDD 369 >gi|167464004|ref|ZP_02329093.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382960|ref|ZP_08056792.1| tRNA-specific 2-thiouridylase MnmA-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153080|gb|EFX45538.1| tRNA-specific 2-thiouridylase MnmA-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 364 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 134/371 (36%), Positives = 191/371 (51%), Gaps = 25/371 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + R+++ MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D RRV Sbjct: 4 NKRIILGMSGGVDSSVSALLLKEQGYDVIGVFMKNWDD---TVEFGHCTAEEDAEDVRRV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + + Y ++E+++ V F + Y G TP P V CNR +KF + L LG D Sbjct: 61 CDQVGIPFYTVNFEKQYMEKVFSYFLNEYKRGRTPNPDVMCNREIKFGEFLQKGLDLGGD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R G+ ++ R D +DQ+YFL A Q QL FP+G + K Sbjct: 121 YIATGHYARVEERNGE-----YVLLRGNDPNKDQTYFLHALNQFQLSKAMFPIGHLPKPE 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA E GL A K DS +CF+ + + + + N A G++ L G++ GRH+G+ Sbjct: 176 VRKLAEEAGLATAKKKDSTGVCFIGERNFKEFLS--NYLPAKPGEMRTLEGEVKGRHDGL 233 Query: 260 INYTIGQRR---GLGVAMGEPLFVV--YLDKNSSRVIVGPRE-SLEVHRIYLREINWLGD 313 + YT+GQR+ G GEP FV L N V+ G + SL + ++NW+ Sbjct: 234 MYYTLGQRQGLGIGGSGTGEPWFVADKDLQNNILYVVQGEKHPSLYSTGLSATDVNWISP 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 E ++C K R Q D D+ V F++ + V GQ+ VFY + Sbjct: 294 VKPEGQ----YRCTAKFRYRQPDQGVTLTMGADNTCEVIFDEPQKAVTPGQSVVFYDGEV 349 Query: 373 NEARVLGGGII 383 LGGGII Sbjct: 350 ----CLGGGII 356 >gi|255023815|ref|ZP_05295801.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL J1-208] Length = 291 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 113/280 (40%), Positives = 165/280 (58%), Gaps = 11/280 (3%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + N D+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L Sbjct: 58 DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + VGD+ + + R +D +DQ+YFL +Q QL + FPLG Sbjct: 118 ESLGADYVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K VR++A++ GL A+K DS ICF+ + + + A G++ LNG++L Sbjct: 173 GMEKTEVREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLNGEVL 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV 292 G+H+G++ YTIGQR GLG+ GEP FVV D + + V Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVLFV 270 >gi|170718124|ref|YP_001785155.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus somnus 2336] gi|205816854|sp|B0UWF2|MNMA_HAES2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|168826253|gb|ACA31624.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus somnus 2336] Length = 383 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 127/387 (32%), Positives = 212/387 (54%), Gaps = 29/387 (7%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +L +L++ KN K +V+ MSGGVDSSV A +L++ GY V G+ ++ + + C Sbjct: 12 KLTALEIAKNSKK-KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 67 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 68 TAANDLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFK 127 Query: 128 DLLS-VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L LGAD +ATGHY+R D + + R +D +DQSYFL+ ++ Q+ Sbjct: 128 AFLEYAVEDLGADYIATGHYVRR-----SDVNGQTKLLRGLDSNKDQSYFLYTLSKDQVA 182 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 FP+G+++K VR +A ++GL A+K DS ICF+ + K+ D ++R A G+I Sbjct: 183 QSLFPVGEIEKPIVRAIAGDLGLITAEKKDSTGICFIGERKFKDFLERFLP--AQPGEIR 240 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298 ++G+++G+H+G++ YT+GQR+GLG+ +P +VV D ++ ++V +L Sbjct: 241 MVDGKVIGKHDGLMYYTLGQRKGLGIGGVKGLSEDPFYVVDKDLINNVLVVAQGNDNSAL 300 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEV 357 + ++ W+ D L + +C VK R Q V + NDD + V F++ ++ Sbjct: 301 LSQGLMATQLYWI-DRL---PIRQNLRCTVKTRYRQKDVACEVIPINDDCIEVRFDEPQI 356 Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGG+I Sbjct: 357 AVTPGQSAVFYQGEV----CLGGGVIE 379 >gi|28493382|ref|NP_787543.1| tRNA-specific 2-thiouridylase MnmA [Tropheryma whipplei str. Twist] gi|81436231|sp|Q820Y1|MNMA_TROWT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|28476423|gb|AAO44512.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Tropheryma whipplei str. Twist] Length = 359 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 143/382 (37%), Positives = 200/382 (52%), Gaps = 41/382 (10%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+V+ AMSGGVDS+V AA G+DV+GV L L SR AS ++G CC +D DA + Sbjct: 1 MKVLAAMSGGVDSAVAAARAVDMGHDVVGVHLAL--SRSASGKRG-CCTPRDAQDAAQAA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 I + YV+D+ E F+ VI F S Y+AG TP PC+ CN +KFS LL LG D Sbjct: 58 QAIGIPFYVWDFSEEFQEKVIDNFISEYSAGRTPNPCLRCNEHIKFSSLLRRALALGFDA 117 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KKES 199 + TGHY +R+++ +DG + + R +DQSY L Q QL FPLG K+ Sbjct: 118 VCTGHY--ARVFLDEDGTYQ--LHRASSWAKDQSYVLAVLQQAQLKHCYFPLGATPSKKL 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-------EGDIVHLNGQI 252 VR A E GL ++ K DS D+CF+ N G L +GDI+ GQ Sbjct: 174 VRQEADERGLKVSKKPDSHDVCFIPSS---------NTGAWLSQRIGRRDGDIIDDLGQR 224 Query: 253 LGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRI--YLR 306 +G H G YT+GQR+GL ++ G+P +V+ ++ S+ V+VGPRESL V + Sbjct: 225 VGSHTGAFAYTVGQRKGLRLSSPAWDGKPRYVLDIEPISNTVVVGPRESLRVDELSGAFT 284 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 W F ++ C V++R+ DPV DD + V ++ VA GQ+ Sbjct: 285 TTGW----CFTSRPIE---CSVQVRAHSDPVSAIAFIRDDVLVVRPDEPVFAVAKGQSAA 337 Query: 367 FYTSDSNEARVLGGGIISGSKR 388 Y RVLG +I +K+ Sbjct: 338 IYRG----TRVLGQLMIDNTKK 355 >gi|297157006|gb|ADI06718.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces bingchenggensis BCW-1] Length = 384 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 143/385 (37%), Positives = 204/385 (52%), Gaps = 27/385 (7%) Query: 17 NPKD---MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQ 71 P+D +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G+ CC + Sbjct: 10 GPRDGRRLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIE 68 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D DARR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 69 DSRDARRAADVIGIPFYVWDLAERFREDVVDNFIAEYEAGRTPNPCLRCNEKIKFAALLD 128 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LG D + TGHY + + +DG R + R D+ +DQSY L ++QL FP Sbjct: 129 KALALGFDAVCTGHY--ATVVHREDGTRE--LHRASDMAKDQSYVLGVLDERQLAHAMFP 184 Query: 192 LGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 LGD K+ +R A GL +A K DS DICF+ G + + + G A EGDIV + Sbjct: 185 LGDTLTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLAK-HLGTA-EGDIVDED 242 Query: 250 GQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 G+ LG H G +TIGQR+GL + G+P +V+ + ++ V VGP ++L++ + Sbjct: 243 GRKLGTHEGAYGFTIGQRKGLRIGHPAPDGKPRYVLDISPVNNTVTVGPVDALDIASLTA 302 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 W G A ++R+ V + D + V F + GVA GQA Sbjct: 303 ITPRWCGTPPTGPATYT-----AQLRAHGSETEVTAEAVDGELRVTFAEPVRGVAPGQAI 357 Query: 366 VFYTSDSNEARVLGGGIISGSKRSD 390 V Y + ARV+G I+ ++R++ Sbjct: 358 VLY----DGARVVGSATIATTERAE 378 >gi|295836383|ref|ZP_06823316.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces sp. SPB74] gi|295825995|gb|EDY45586.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces sp. SPB74] Length = 385 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 141/381 (37%), Positives = 200/381 (52%), Gaps = 26/381 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDA 76 + ++V+ AMSGGVDS+V AA G+DV GV L L ++ S R G+ CC +D DA Sbjct: 10 RPLKVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDA 68 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL L Sbjct: 69 RRAADVIGIPFYVWDLAERFREDVVDDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALAL 128 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 G D + TGHY +R+ + DG R + R D+ +DQSY L +QL FPLGD + Sbjct: 129 GFDAVCTGHY--ARVLIRPDGSRE--LHRASDMAKDQSYVLGVLDDRQLAHAMFPLGDTE 184 Query: 197 --KESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQIL 253 K+ +R A GL +A K DS DICF+ G + R+ EGDIV +G L Sbjct: 185 TTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGTA---EGDIVDEDGTRL 241 Query: 254 GRHNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 G H G +TIGQR+GL + A G+P +V+ + + V VGPR SL+V + Sbjct: 242 GTHQGAYGFTIGQRKGLRIGHPAADGKPRYVLDISPVDNTVTVGPRASLDVASLTAVRPR 301 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 W G A + + ++R+ V + + V+F+ GVA GQA V Y Sbjct: 302 WCG-----TAPLTAGRYTAQLRAHGGESDVRAELAGGELRVEFDAPVRGVAPGQAVVLY- 355 Query: 370 SDSNEARVLGGGIISGSKRSD 390 + RV+G I+ +++ + Sbjct: 356 ---DGTRVVGSATIATTRKPE 373 >gi|153838264|ref|ZP_01990931.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio parahaemolyticus AQ3810] gi|161511058|ref|NP_797509.2| tRNA-specific 2-thiouridylase MnmA [Vibrio parahaemolyticus RIMD 2210633] gi|260364461|ref|ZP_05777086.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio parahaemolyticus K5030] gi|260877061|ref|ZP_05889416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio parahaemolyticus AN-5034] gi|260896850|ref|ZP_05905346.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio parahaemolyticus Peru-466] gi|260902426|ref|ZP_05910821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio parahaemolyticus AQ4037] gi|32130287|sp|Q87QL9|MNMA_VIBPA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|149748319|gb|EDM59178.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio parahaemolyticus AQ3810] gi|308087006|gb|EFO36701.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio parahaemolyticus Peru-466] gi|308093683|gb|EFO43378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio parahaemolyticus AN-5034] gi|308110639|gb|EFO48179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio parahaemolyticus AQ4037] gi|308114601|gb|EFO52141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio parahaemolyticus K5030] Length = 374 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 125/375 (33%), Positives = 203/375 (54%), Gaps = 28/375 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + + C A +D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R ++G++ + M R +D +DQSYFL+ + +Q+ FP+GD++K V Sbjct: 125 IAMGHYVRRSF--PENGEKPQ-MLRGLDSNKDQSYFLYTLSHEQVARSLFPVGDLEKPEV 181 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A K DS ICF+ + K+ + + R A G+I G+++G+H G++ Sbjct: 182 RRIAEEQGLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQHQGLM 239 Query: 261 NYTIGQRRGLGVAMG-------EPLFVVY--LDKNSSRVIVGP-RESLEVHRIYLREINW 310 +T+GQR+GL + +P FV LD+N + G L+ + +++W Sbjct: 240 YHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLDRNVLIAVQGKDHPMLKSEGLLASQLHW 299 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + + D KC VK R Q +P + +D+ + V F++ ++ V GQ+ VFY Sbjct: 300 VD----REPIRDVMKCTVKTRYRQQDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAVFYK 355 Query: 370 SDSNEARVLGGGIIS 384 D LGGGII Sbjct: 356 DDV----CLGGGIIE 366 >gi|218961454|ref|YP_001741229.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Cloacamonas acidaminovorans] gi|167730111|emb|CAO81023.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Cloacamonas acidaminovorans] Length = 382 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 121/356 (33%), Positives = 193/356 (54%), Gaps = 24/356 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAG----QDV 73 K V V +SGG+DS++ A LL+ GY VIG+T+Q Y+ + K S C G +++ Sbjct: 3 KKTSVAVGISGGIDSAMTAYLLQESGYRVIGITMQTYDENIEMDKTLKSGCFGPAQEENI 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 A + + + HY+ +E FR+ VI F +Y G+TP PC+ CN +KF+ L Sbjct: 63 LSASLLWRKLGIEHYIIPLQEEFRHKVIDYFCETYIKGKTPNPCLVCNAYIKFALLPEKA 122 Query: 134 RQLGA--DVLATGHYIRSRLYVGDDGKRRRIMCRPM-DLERDQSYFLFATTQQQLCDLRF 190 LG D ATGHY + +G + +R R D +DQSYFL +Q+QL F Sbjct: 123 HSLGLEFDYFATGHYAK----IGFNNTLKRYQIRKAKDANKDQSYFLAFLSQEQLAQTLF 178 Query: 191 PLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 PLGD K+ ++ +A G ++ ++ +SQD F+Q + K + G+I+ + Sbjct: 179 PLGDYTKQEIKKMAIGKGFTELVERKESQD--FLQSSDLEVLFKPEDFN---PGEIIDMQ 233 Query: 250 GQILGRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 G+++G+H GIINYTIGQRR LG++ M EP +V+ +D ++R+++GP+E L + ++ Sbjct: 234 GKVIGKHKGIINYTIGQRRNLGISGMPEPYYVLQIDAENNRIVLGPKEYLFKKKCSATDM 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363 NW+ A F+ KIR P V ND+ + V F++ ++ + GQ Sbjct: 294 NWVS----LPAPEKKFRAKAKIRQQHSPADCIVTPINDNTIEVVFKEPQLSITPGQ 345 >gi|281355523|ref|ZP_06242017.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Victivallis vadensis ATCC BAA-548] gi|281318403|gb|EFB02423.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Victivallis vadensis ATCC BAA-548] Length = 358 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 135/365 (36%), Positives = 187/365 (51%), Gaps = 17/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+VA+SGGVDSSV A L ++ G +VIGVTL+L + C + D +C Sbjct: 4 KVIVALSGGVDSSVAAVLAQQAGCEVIGVTLRLKHPDPEFSAAQLCASKNDEAAVESICA 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H+ + F V+ P A YA G TP PC +CN +KF L+ R +GA + Sbjct: 64 KLGIEHHYLELFPEFECKVLRPAAQEYARGRTPNPCCECNYRIKFGKLVEFARSVGAAKV 123 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 TGHY + + G RR DL++DQSYFL+ Q L +RFP+G M K VR Sbjct: 124 LTGHYAKLSEHGGVYELRRG-----DDLKKDQSYFLYRLDQAILSMVRFPVGAMDKGEVR 178 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A E GL +DK DSQD CF G+ F R + + G+I+GRHNG+ Sbjct: 179 RIAAEYGLVTSDKPDSQDACFQVPGESFGETLRRLEKLPRRPGLFRYQGRIVGRHNGVHE 238 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSS--RVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +TIGQR+GL VA+G P +V +D S R+ P E L R + ++W G D Sbjct: 239 FTIGQRKGLNVALGVPAYVAGIDPESGDIRLETEP-ERLLASRFTVERVSWQ-SGRAPD- 295 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEK-SEVGVASGQACVFYTSDSNEARVL 378 + G + V+IR VP V+ + G F + V GQA VFY D +L Sbjct: 296 -LSG-ELEVQIRYRSRAVPCRVEPDGAGGAAVFPAIPQRAVTPGQAAVFYRGDL----LL 349 Query: 379 GGGII 383 GGG+I Sbjct: 350 GGGVI 354 >gi|70731250|ref|YP_260991.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas fluorescens Pf-5] gi|123654441|sp|Q4K9U2|MNMA_PSEF5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|68345549|gb|AAY93155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas fluorescens Pf-5] Length = 377 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 128/381 (33%), Positives = 200/381 (52%), Gaps = 29/381 (7%) Query: 15 DKNPKDM---RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 D P D RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A Sbjct: 3 DPAPSDTQKKRVIVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWEEDDGTE---YCTAMD 59 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DA+ VCD I + + ++ + + V F + Y AG TP P + CNR +KF L Sbjct: 60 DLADAQAVCDKIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLD 119 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP Sbjct: 120 YAMMLGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFP 174 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 +G+++K VR +A + L A K DS ICF+ + ++ D +K+ A G+I G+ Sbjct: 175 VGELEKPEVRAIAEKHDLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGEIKTTEGE 232 Query: 252 ILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 ++GRH+G++ +TIGQR+GLG+ A EP +V+ D + +IVG + + ++ R Sbjct: 233 VIGRHHGLMYHTIGQRQGLGIGGLKDAGEEPWYVLIKDLEHNELIVG--QGNDHPWLFSR 290 Query: 307 EINWLGDGLFEDAVVD---GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 + L ++ +D + K+R Q P +++ +G F+ + V GQ Sbjct: 291 AL--LASDIYWVNPIDLSLPRRLTAKVRYRQSDQPCTLEKTTNGYRATFDDPQRAVTPGQ 348 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY + LGGG+I Sbjct: 349 SVVFYDGEI----CLGGGVIE 365 >gi|145219199|ref|YP_001129908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prosthecochloris vibrioformis DSM 265] gi|205816888|sp|A4SD47|MNMA_PROVI RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|145205363|gb|ABP36406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobium phaeovibrioides DSM 265] Length = 357 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 127/376 (33%), Positives = 191/376 (50%), Gaps = 37/376 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ V+V +SGGVDS+V A +L +GY VIG+ +++ +S +++ + V R Sbjct: 3 QETTVLVGISGGVDSAVAACMLVDEGYRVIGLNIKVLDSPESNP---ALQPSSLVISNR- 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + Y + +RFR VI F Y A TP PC+ CN+ +K++ LL L A Sbjct: 59 --EEFRIPVYTLNLSKRFREDVIGYFQEEYLAARTPNPCIVCNKKIKWAGLLEAADMLNA 116 Query: 139 DVLATGHYI-------RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 D++ATGHY R RLY G D K+ DQSYFL+ Q++L P Sbjct: 117 DLVATGHYASTAFLGGRCRLYQGADKKK------------DQSYFLWMLQQKELLKTILP 164 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHL 248 LG + K VR+LAR G+ A+K +SQ+ICFV Y +++ +A G++V Sbjct: 165 LGTLAKPEVRELARSYGVPAAEKKESQEICFVPGDDYCRYLEQAIPDLAERVRGGELVDA 224 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G+++G H G YTIGQRRGLG + GEP++V +D +R+ G + L + + Sbjct: 225 SGRVIGHHRGYPFYTIGQRRGLGASTGEPIYVTSIDPVHNRIHTGKKTDLLSRELTASGM 284 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVF 367 NW+G + F+ +IR P P V D+ + F + + GQA V Sbjct: 285 NWIGI----EPPKKPFEATARIRYRDAPTPCRVTPLEDNRATISFHSPKSAITRGQAAVI 340 Query: 368 YTSDSNEARVLGGGII 383 Y D VLGGG I Sbjct: 341 YRDDE----VLGGGSI 352 >gi|258508299|ref|YP_003171050.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus rhamnosus GG] gi|257148226|emb|CAR87199.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus rhamnosus GG] Length = 372 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 133/375 (35%), Positives = 187/375 (49%), Gaps = 25/375 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A D D +V Sbjct: 5 NTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDVAKV 61 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 I + +Y ++E+ + + V F Y AG TP P V CN+ +KF L QL AD Sbjct: 62 ASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQLNAD 121 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +A GHY + V D + M R D +DQ+YFL +Q QL FP+G ++K Sbjct: 122 YIAMGHYAQ----VKTDEQGAVHMLRGADGNKDQTYFLSQLSQDQLKKSMFPIGHLQKPE 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A GL A K DS ICF+ + + + A G ++ ++G G H+G+ Sbjct: 178 VRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEKGTHDGL 235 Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 + YTIGQR+GLG+ EP FVV D + + + VG +L + +NW Sbjct: 236 MYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTT 295 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371 +A DG K R Q V + +DDG VDF+ + GQA VFY + Sbjct: 296 G----EAPADGTHMTAKFRYRQRDTGVTIHYHDDGTATVDFDVPVRAITPGQAVVFYDGE 351 Query: 372 SNEARVLGGGIISGS 386 LGGG I + Sbjct: 352 ----ECLGGGTIDAA 362 >gi|302524933|ref|ZP_07277275.1| tRNA methyl transferase [Streptomyces sp. AA4] gi|302433828|gb|EFL05644.1| tRNA methyl transferase [Streptomyces sp. AA4] Length = 361 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 146/376 (38%), Positives = 196/376 (52%), Gaps = 27/376 (7%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCD 81 + AMSGGVDS+V AA G+DV+GV L L +++ + R GS CC +D +DARR D Sbjct: 1 MAAMSGGVDSAVAAARAVDAGHDVVGVHLAL-SAQPGTLRTGSRGCCTIEDSHDARRAAD 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + Y++D+ ERF V+ F YAAG TP PCV CN +KF LL LG D + Sbjct: 60 ILGIPFYIWDFAERFTEEVVETFVGEYAAGRTPNPCVTCNEKIKFEALLEKALALGFDAV 119 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R G+ RR D +DQSY L + +QL FPLGD K VR Sbjct: 120 ATGHYARLATVDGELELRRS-----ADEGKDQSYVLASLQPEQLRHAMFPLGDSWKSDVR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258 A + GL +A K DS DICF+ G K F + KR+ G++V G +LGRH G Sbjct: 175 AEAEQRGLSVARKPDSHDICFIPDGDTKKF-LEKRLG---ERPGELVDAETGAVLGRHTG 230 Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 + +T+GQR+GLG+ A G P +V+ L+ S V VG L V I W Sbjct: 231 VHGFTVGQRKGLGIDAPAADGRPRYVLSLEPVSGTVKVGSSADLGVQAIDADRAIWP--- 287 Query: 315 LFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 +DG +C V++R+ + ++DG V + +S GVA GQ V Y D Sbjct: 288 --SGRALDGPTECTVQVRAHGGIADAVAEVDEDGRVSIQLRESLRGVAPGQVVVLYRRDD 345 Query: 373 NEAR-VLGGGIISGSK 387 VLG ISG++ Sbjct: 346 QAGDLVLGSAKISGTR 361 >gi|260904921|ref|ZP_05913243.1| tRNA-specific 2-thiouridylase MnmA [Brevibacterium linens BL2] Length = 397 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 145/399 (36%), Positives = 195/399 (48%), Gaps = 48/399 (12%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+++VAMSGGVDSSV AA G++V+GV L L + + R GS CC +D DA R Sbjct: 1 MKILVAMSGGVDSSVAAARAVDAGHEVVGVHLAL-SRMPGTLRTGSRGCCTIEDSRDAHR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V +++ YV+D+ ERF+ ++ F + YAAG TP PC+ CN +KF+ LL LG Sbjct: 60 VAGMLDIPFYVWDFSERFKEDIVDDFIAEYAAGRTPNPCMRCNERIKFAALLDRALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG-DMKK 197 D +ATGHY + + D+G + R DL +DQSY L + QL FP+G K Sbjct: 120 DAIATGHY--AEVLRDDNGLPE--LHRGEDLAKDQSYVLGVLSGDQLEHCYFPIGATASK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRH 256 VR A E G +A+K DS DICF+ G D + I + G I G+ LG H Sbjct: 176 AEVRAEAAERGFSVANKPDSYDICFIPDG---DTKAWLADKIPMRPGLIKDAEGETLGEH 232 Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G + YTIGQR+GLG+ A G+P FV LD S+ V VG R L V + W G Sbjct: 233 DGAMTYTIGQRKGLGIQKPAADGQPRFVTGLDPASNTVTVGSRSDLAVSHLTGIRTTWAG 292 Query: 313 DGLFE--DAVVDGFKCFVKIRSSQDPVPVFVQRND------------------------- 345 + C V+IR+ DPVP D Sbjct: 293 PAPTDIGSEPATAIDCEVQIRAHSDPVPARAWLGDYISEAPEHEVNPIVDEVEVPAARPA 352 Query: 346 -DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 +++D ++ GVA GQ V Y RVLG I Sbjct: 353 GQLMHIDVDEELSGVAPGQTMVIYRG----TRVLGQATI 387 >gi|318059485|ref|ZP_07978208.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces sp. SA3_actG] gi|318081277|ref|ZP_07988609.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces sp. SA3_actF] Length = 372 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 197/377 (52%), Gaps = 26/377 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVC 80 ++ AMSGGVDS+V AA G+DV GV L L ++ S R G+ CC +D DARR Sbjct: 1 MLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDARRAA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL LG D Sbjct: 60 DVIGIPFYVWDLAERFREDVVDDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALALGFDA 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK--KE 198 + TGHY +R+ DG R + R D+ +DQSY L +QL FPLGD + K+ Sbjct: 120 VCTGHY--ARVLTHPDGSRE--LHRASDMAKDQSYVLGVLDDRQLAHAMFPLGDTETTKD 175 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRHN 257 +R A GL +A K DS DICF+ G + R+ EGDIV +G LG H Sbjct: 176 EIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGTA---EGDIVDESGTRLGTHQ 232 Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G +TIGQR+GL + A G+P +V+ + + V VGPRESL+V + W G Sbjct: 233 GAYGFTIGQRKGLRIGHPAADGKPRYVLDISPVDNTVTVGPRESLDVASLTAVRPRWCG- 291 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 A + + ++R+ V + D + V F+ GVA GQA V Y + Sbjct: 292 ----TAPLTAGRYTAQLRAHGGECEVRAELAGDELRVAFDAPVRGVAPGQAVVLY----D 343 Query: 374 EARVLGGGIISGSKRSD 390 RV+G I+ +++ + Sbjct: 344 GTRVVGSATIATTRKPE 360 >gi|259649616|dbj|BAI41778.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Lactobacillus rhamnosus GG] Length = 377 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 133/375 (35%), Positives = 187/375 (49%), Gaps = 25/375 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A D D +V Sbjct: 10 NTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDVAKV 66 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 I + +Y ++E+ + + V F Y AG TP P V CN+ +KF L QL AD Sbjct: 67 ASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQLNAD 126 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +A GHY + V D + M R D +DQ+YFL +Q QL FP+G ++K Sbjct: 127 YIAMGHYAQ----VKTDEQGAVHMLRGADGNKDQTYFLSQLSQDQLKKSMFPIGHLQKPE 182 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A GL A K DS ICF+ + + + A G ++ ++G G H+G+ Sbjct: 183 VRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEKGTHDGL 240 Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 + YTIGQR+GLG+ EP FVV D + + + VG +L + +NW Sbjct: 241 MYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTT 300 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371 +A DG K R Q V + +DDG VDF+ + GQA VFY + Sbjct: 301 G----EAPADGTHMTAKFRYRQRDTGVTIHYHDDGTATVDFDVPVRAITPGQAVVFYDGE 356 Query: 372 SNEARVLGGGIISGS 386 LGGG I + Sbjct: 357 ----ECLGGGTIDAA 367 >gi|294140592|ref|YP_003556570.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Shewanella violacea DSS12] gi|293327061|dbj|BAJ01792.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Shewanella violacea DSS12] Length = 376 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 135/399 (33%), Positives = 210/399 (52%), Gaps = 45/399 (11%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M E T LN + +V+V MSGGVDSSV A LL + GY V G+ ++ + Sbjct: 1 MAAIEPTALN---------NKKVIVGMSGGVDSSVSAYLLLKQGYQVEGLFMKNWEEDDT 51 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 52 DEY---CAAADDLKDAQAVCDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIIC 108 Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L + L AD +A GHY+R + G+ R M R +D +DQSYFL+ Sbjct: 109 NKEIKFKAFLEFADEILDADFIAMGHYVRRS---DETGQSR--MLRGIDGNKDQSYFLYT 163 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR++A+EMGL DK DS ICF+ + K+ D + Sbjct: 164 LSHEQIARSLFPVGELEKSEVREIAKEMGLITHDKKDSTGICFIGERKFTDFLSTFLP-- 221 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG- 293 A GDI G+++G+H G++ +T+GQR+GLG+ + +P +VV + + + ++VG Sbjct: 222 AQPGDIETAEGEVIGKHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKEMDRNVLVVGQ 281 Query: 294 ----PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP--VFVQRNDDG 347 PR L Y +++W+ VD K VK R Q V +F++ ND G Sbjct: 282 GGTHPR--LMSLGFYADQLHWVD----RKGPVDEAKITVKTRYRQRDVACTLFLETNDKG 335 Query: 348 ---VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 + V F++ V GQ+ VFY+ + LGGGII Sbjct: 336 EDTIRVLFDEPVAAVTPGQSAVFYSGE----LCLGGGII 370 >gi|161353438|ref|NP_208127.2| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori 26695] gi|205371769|sp|O25893|MNMA_HELPY RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 342 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 123/370 (33%), Positives = 202/370 (54%), Gaps = 36/370 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78 M++ V +SGGVDSS A LK G++++G+ L+L+ S K D+Y +A++ Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + V D+++ F++AV F ++Y G+TP PC CN +KF L +LG Sbjct: 51 ACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + + + + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 111 EKIATGHYARVK-----EIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165 Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++ LA +G + +SQ+ICFV++ Y D +K+ + + EG + +L G+++G Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEVIG 222 Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G + YTIG+R+G + EP FVV +D + ++VG +E L H + + + + D Sbjct: 223 THKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKD 282 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F+D + F+K R P V D+ + V F++ GVA GQA V Y D Sbjct: 283 --FKDG-----EYFIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYKDDI- 334 Query: 374 EARVLGGGII 383 +LGGG+I Sbjct: 335 ---LLGGGVI 341 >gi|119476176|ref|ZP_01616528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [marine gamma proteobacterium HTCC2143] gi|119450803|gb|EAW32037.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [marine gamma proteobacterium HTCC2143] Length = 372 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 127/379 (33%), Positives = 206/379 (54%), Gaps = 30/379 (7%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P D +V+V MSGGVDSSV A LL++ GY V G+ ++ ++ S+ C A D+ DA+ Sbjct: 9 PSDQKVIVGMSGGVDSSVSALLLQQQGYQVEGLFMKNWDEDDGSEY---CTAKDDLADAQ 65 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 VCD + ++ + ++ + + V F + Y AG TP P V CNR +KF L LG Sbjct: 66 AVCDQLKITLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDVLCNREIKFKAFLDYALVLG 125 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY+R + +GD R + + D +DQSYFL A + ++ FP+GD++K Sbjct: 126 ADYIATGHYVR-KHQMGD----RAQLIKGRDNNKDQSYFLHAVSGTEIAKTLFPVGDLEK 180 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR +A + L +K DS ICF+ + ++ D +++ A G I +G I+G H+ Sbjct: 181 PDVRAIAEKYSLTTHNKKDSTGICFIGERRFKDFLQQYLP--AQPGMIEDTDGSIMGGHS 238 Query: 258 GIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHR-----IYLRE 307 G++ +TIGQR+GLG+ A P +VV DK+ R ++ + + HR +++ E Sbjct: 239 GLMYHTIGQRQGLGIGGVSGAGDAPWYVV--DKDLKRNVLIIAQGSQHHRLFKQGLFVSE 296 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 I+W+ + D + +C KIR Q +++ G + F+ + + GQ+ VF Sbjct: 297 IHWINN----DGITLPHRCKAKIRYRQVDQNCEIRKLSVGYEIVFDLPQRAITPGQSVVF 352 Query: 368 YTSDSNEARVLGGGIISGS 386 Y ++ LGGG+I + Sbjct: 353 YDNEI----CLGGGVIEAA 367 >gi|282861250|ref|ZP_06270315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces sp. ACTE] gi|282563908|gb|EFB69445.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces sp. ACTE] Length = 377 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 142/386 (36%), Positives = 198/386 (51%), Gaps = 25/386 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDA 76 + +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G+ CC +D DA Sbjct: 7 RPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDA 65 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL L Sbjct: 66 RRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALAL 125 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194 G D + TGHY + + + +DG R + R D+ +DQSY L ++QL FPLGD Sbjct: 126 GFDAVCTGHY--ATVVLTEDGTRE--LHRASDMAKDQSYVLGVLDEKQLAHAMFPLGDTL 181 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 K+ +R A GL +A K DS DICF+ G + G A EGDIV G +G Sbjct: 182 TTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLANRLGGPA-EGDIVDEAGTKVG 240 Query: 255 RHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 H G +TIGQR+GL + G+P +V+ + ++ V VGP E+L+V + W Sbjct: 241 THEGAFGFTIGQRKGLRIGHPAPDGKPRYVLDISPVNNTVTVGPVEALDVTALTAIRPRW 300 Query: 311 LGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 G G + ++R+ V + D + V F + GVA GQA V Y Sbjct: 301 CG------TAPSGPGTYTAQLRAHGGETEVTAELVDGTLNVSFTEPVRGVAPGQAVVLY- 353 Query: 370 SDSNEARVLGGGIISGSKRSDAVEES 395 + RV+G I+ + R + S Sbjct: 354 ---DGTRVVGSATIATTVRRETAAAS 376 >gi|330810455|ref|YP_004354917.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378563|gb|AEA69913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 374 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 128/381 (33%), Positives = 197/381 (51%), Gaps = 29/381 (7%) Query: 15 DKNPKDM---RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 D P D RV+V MSGGVDSSV A LL GY+V G+ ++ + ++ C A Sbjct: 3 DPAPSDTSKKRVIVGMSGGVDSSVSALLLIEQGYEVEGLFMKNWEEDDGTE---YCTAMD 59 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DA+ VCD I + + ++ + + V F + Y AG TP P + CNR +KF L Sbjct: 60 DLADAQAVCDKIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLD 119 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP Sbjct: 120 YAMMLGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFP 174 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 +G+++K VR +A + L A K DS ICF+ + ++ D +K+ A G+I G+ Sbjct: 175 VGELEKPEVRAIAEKHQLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGEIKTTEGE 232 Query: 252 ILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 ++GRH+G++ +TIGQR+GLG+ A EP +V+ D + +IVG L + Sbjct: 233 VIGRHHGLMYHTIGQRQGLGIGGLKDAGEEPWYVLVKDLEHNELIVGQGNDHPWLFSRAL 292 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 +I W+ + + + K+R Q P +++ G F+ + V GQ Sbjct: 293 LASDIYWVN----PIDLGEPRRLTAKVRYRQSDQPCTLEKTATGYRATFDDPQRAVTPGQ 348 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY + LGGG+I Sbjct: 349 SVVFYDGEI----CLGGGVIE 365 >gi|78188235|ref|YP_378573.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobium chlorochromatii CaD3] gi|123580466|sp|Q3ATZ5|MNMA_CHLCH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|78170434|gb|ABB27530.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobium chlorochromatii CaD3] Length = 359 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 126/366 (34%), Positives = 188/366 (51%), Gaps = 20/366 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++V +SGGVDS+V LL + GY V V L+L ++ A + + V Sbjct: 6 HILVGISGGVDSAVATCLLVQQGYRVTAVNLRLLDTLDAPYAEPTLQPSSLVVSDH---P 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 ++ + + FR+ V+ F + Y AG TP PC+ CNR VK++ L +GA+ + Sbjct: 63 DYHIPLFSLNLSRTFRDEVMRYFNAEYLAGRTPNPCMVCNRQVKWAGLRHAAELIGANAI 122 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY DG+ R + + D ++DQSYFL+ +Q+ L PLG + K VR Sbjct: 123 ATGHYANRAF---SDGRYR--LYKGADSQKDQSYFLWMLSQKDLAHTLLPLGGLTKPEVR 177 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA---LEGDIVHLNGQILGRHNG 258 +LA+ G+ A+K +SQ+ICFV Y + +A +GDIV G ++G+H G Sbjct: 178 ELAKNFGVRAAEKKESQEICFVPNDDYSTYLMSAMPELAERVADGDIVDAAGTVIGKHRG 237 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 YTIGQRRGLGV+ EPL+V LD +R+ VG + +L HR+ NW+G + Sbjct: 238 YPFYTIGQRRGLGVSAKEPLYVTALDAEQNRIHVGHKAALMSHRLLASRCNWIG----ME 293 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + +IR V ++G + V F++ + + GQA VFY D V Sbjct: 294 PPSSSVELLGRIRYRDRQTACRVTPLENGQIEVVFQEPKSAITPGQAVVFYCGD----EV 349 Query: 378 LGGGII 383 LGGG I Sbjct: 350 LGGGFI 355 >gi|318606118|emb|CBY27616.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia enterocolitica subsp. palearctica Y11] Length = 373 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 130/375 (34%), Positives = 202/375 (53%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + +GK R + R +D +DQSYFL+ + +QL FP+G+++K V Sbjct: 125 IATGHYVRRQDV---NGKSR--LLRGLDGNKDQSYFLYTLSHEQLTQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ D + R A G I+ ++GQ +G H G++ Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHVGEHQGLM 237 Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREINW 310 +T+GQR+GLG+ +P +VV DK+ + I+ + E R+ ++++W Sbjct: 238 YHTLGQRKGLGIGGTKEGGDDPWYVV--DKDVANNILLVAQGHEHPRLMSVGLIAQQLHW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + + V F+C VK R Q +P V DD V V F++ V GQ+ VFY Sbjct: 296 VD----REPVTAAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDEPVAAVTPGQSAVFYQ 351 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 GEV----CLGGGIIE 362 >gi|332162070|ref|YP_004298647.1| tRNA-specific 2-thiouridylase MnmA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666300|gb|ADZ42944.1| tRNA-specific 2-thiouridylase MnmA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860067|emb|CBX70393.1| tRNA-specific 2-thiouridylase mnmA [Yersinia enterocolitica W22703] Length = 373 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 130/375 (34%), Positives = 202/375 (53%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + +GK R + R +D +DQSYFL+ + +QL FP+G+++K V Sbjct: 125 IATGHYVRRQDV---NGKSR--LLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ D + R A G I+ ++GQ +G H G++ Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHVGEHQGLM 237 Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREINW 310 +T+GQR+GLG+ +P +VV DK+ + I+ + E R+ ++++W Sbjct: 238 YHTLGQRKGLGIGGTKEGGDDPWYVV--DKDVANNILLVAQGHEHPRLMSVGLIAQQLHW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + + V F+C VK R Q +P V DD V V F++ V GQ+ VFY Sbjct: 296 VD----REPVTAAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDEPVAAVTPGQSAVFYQ 351 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 GEV----CLGGGIIE 362 >gi|308185086|ref|YP_003929219.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori SJM180] gi|308061006|gb|ADO02902.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori SJM180] Length = 342 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 125/370 (33%), Positives = 200/370 (54%), Gaps = 36/370 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78 M++ V +SGGVDSS A LK G++++G+ L+L+ S K D+Y +A++ Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG Sbjct: 51 ACEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + + + + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 111 EKIATGHYARVK-----EIDKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165 Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++ LA +G + +SQ+ICFV++ Y D +K+ + + EG + +L G+I+G Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222 Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G + YTIG+R+G + EP FVV +D + +IVG +E L H + + + + D Sbjct: 223 THKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAQNKSLMKD 282 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F+ +K R P FV D + V+F++ GVA GQA V Y D Sbjct: 283 --FKKGEYS-----IKARYRSVPAKAFVSLKDGMIEVEFKEPFYGVAKGQALVVYQDDI- 334 Query: 374 EARVLGGGII 383 +LGGG+I Sbjct: 335 ---LLGGGVI 341 >gi|256425783|ref|YP_003126436.1| tRNA-specific 2-thiouridylase MnmA [Chitinophaga pinensis DSM 2588] gi|256040691|gb|ACU64235.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Chitinophaga pinensis DSM 2588] Length = 366 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 126/369 (34%), Positives = 192/369 (52%), Gaps = 19/369 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDARRV 79 +V+VAMSGG+DS+V A +L GY+V+G+T++ Y S +SK++ CC DAR Sbjct: 6 KVLVAMSGGIDSTVTALMLHEQGYEVVGITMKTWDYASAGSSKKETGCCNLDSFNDARAA 65 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 H+V D + F + VI F Y AG TP PCV CN +K+ L+ + Sbjct: 66 AVHHGFPHFVLDIRDEFGDFVINNFVDEYIAGRTPNPCVLCNTHIKWRALMKRADAMDCA 125 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + R G R I+ + +D +DQSY L+ Q L PLG +K Sbjct: 126 FIATGHYAQIREQDG-----RHILSKGIDDLKDQSYVLWGLQQDVLARTILPLGQYRKTE 180 Query: 200 VRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGR 255 +R +A + G ++A K++S +ICFV Y +KR G+ + G+ V +G I+G Sbjct: 181 IRQMAFDFGYPELAKKAESYEICFVPDNDYRGFLKRKVDGLEEQVNGGNFVLRDGTIVGH 240 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H G YTIGQR+GL +A+G P+FV + ++ V++G + L + + + +N + Sbjct: 241 HKGYPFYTIGQRKGLDIALGRPVFVTEIIPETNTVVLGNEDELNRNEMTVAGLNMIK--- 297 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 D + +G + KIR + D V V+F + G+A GQ+ VFY D Sbjct: 298 -YDHIPEGMEAITKIRYKDKGALSNLYNVDGKVKVNFYEHVKGIAPGQSAVFYEGDD--- 353 Query: 376 RVLGGGIIS 384 V+ GGII Sbjct: 354 -VIAGGIIQ 361 >gi|2314503|gb|AAD08378.1| conserved hypothetical protein [Helicobacter pylori 26695] Length = 360 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 126/384 (32%), Positives = 209/384 (54%), Gaps = 37/384 (9%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 RL ++ ++ K M++ V +SGGVDSS A LK G++++G+ L+L+ S K Sbjct: 6 ARLRAITHNERLK-MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK------ 58 Query: 67 CCAGQDVY--DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 D+Y +A++ C+ + + V D+++ F++AV F ++Y G+TP PC CN + Sbjct: 59 ----HDLYIKNAQKACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLM 114 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 KF L +LG + +ATGHY R + + + + +D +DQSYFL+A + Sbjct: 115 KFGLALDHALKLGCEKIATGHYARVK-----EIDKISYIQEALDKTKDQSYFLYALEHEV 169 Query: 185 LCDLRFPLGDMKKESVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 + L FPLGD+ K+ ++ LA +G + +SQ+ICFV++ Y D +K+ + + Sbjct: 170 IAKLVFPLGDLLKKDIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVE 226 Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLE 299 EG + +L G+++G H G + YTIG+R+G + EP FVV +D + ++VG +E L Sbjct: 227 KEGVVKNLQGEVIGTHKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLA 286 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV 359 H + + + + D F+D + F+K R P V D+ + V F++ GV Sbjct: 287 THSLKAKNKSLMKD--FKDG-----EYFIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGV 339 Query: 360 ASGQACVFYTSDSNEARVLGGGII 383 A GQA V Y D +LGGG+I Sbjct: 340 AKGQALVVYKDDI----LLGGGVI 359 >gi|224371642|ref|YP_002605806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfobacterium autotrophicum HRM2] gi|223694359|gb|ACN17642.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfobacterium autotrophicum HRM2] Length = 365 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 124/366 (33%), Positives = 186/366 (50%), Gaps = 36/366 (9%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 +AMSGG+DS V A +LKR G+D++G+ + + D + D Sbjct: 30 TAIAMSGGIDSLVAAHVLKRQGHDLVGIHF-------------TTGFESEAVDLSSIEDQ 76 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 +++ + D F AV+ F +YA G+TP PCV CNRT+KF L + LGA+ +A Sbjct: 77 LDIKIHQMDLSAEFNRAVVDYFVKTYARGKTPNPCVVCNRTIKFGVLAQRAKTLGAEKIA 136 Query: 143 TGHYIRSRLYVGDDGKRRR-----IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 TGHY G R R + + +D +DQSYFL +Q+QL FPLG M K Sbjct: 137 TGHYA---------GTRTRSNGGIALVKGVDGVKDQSYFLAMLSQEQLKQAVFPLGRMTK 187 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 E VR++AR+ L ++ +SQDICF++ + V + GDIV +G ++GRH Sbjct: 188 EQVRNIARDNRLMPVEEKESQDICFIKAPGFSGFVAARLSTPPSPGDIVLTDGTVVGRHR 247 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 G+ YTIGQRRGL EP +V +D ++ ++VG ++ L ++ + ++NW+ L Sbjct: 248 GLHRYTIGQRRGLNSPGPEPYYVKTIDMENNLLVVGGKKELYTIKVAVGDLNWITPPL-- 305 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 K KIR S + +D + F+ ++ V GQ VFY + V Sbjct: 306 ---ASSLKVTTKIRYSHKGAASTLSIENDRTTLVFDAPQLAVTPGQVAVFY----RDEEV 358 Query: 378 LGGGII 383 LG GII Sbjct: 359 LGAGII 364 >gi|86742330|ref|YP_482730.1| tRNA-specific 2-thiouridylase MnmA [Frankia sp. CcI3] gi|123750792|sp|Q2J6U1|MNMA_FRASC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|86569192|gb|ABD13001.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Frankia sp. CcI3] Length = 352 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 149/369 (40%), Positives = 191/369 (51%), Gaps = 28/369 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV GV L L S + S R G+ CC +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVDAGHDVTGVHLALSRSPE-SDRTGARGCCTIEDARDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D +RF VI F SYAAG TP PCV CN +KF+ +L LG Sbjct: 60 AADILGIPFYVWDLADRFETDVIEEFVESYAAGRTPNPCVRCNERIKFAAVLDKALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + + TGH+ R + DG R R +D ++DQSY L +QL RFPLGD K Sbjct: 120 EAVVTGHHAR----LDPDGTLR----RSVDPDKDQSYVLGTLRPEQLAAARFPLGDSTKA 171 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR A E L +ADK DS DICF+ G + R G I GQ LG H+G Sbjct: 172 QVRVEAAERRLAVADKPDSHDICFISHGDTGGWL-RERLGPRPGPVIDATTGQTLGHHDG 230 Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +T+GQRRGL + A G P +V+ + +S V VGP E+L+V R+ W +G Sbjct: 231 AYAFTVGQRRGLKLGRPAADGRPRYVLDISPVTSTVTVGPAEALDVRRLVADRAVWPHEG 290 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 C ++R+ VP Q D+ + V G A+GQA V Y D Sbjct: 291 --------AVSCLAQVRAHGGVVPAVAQARDEELVVTLTTPVRGTAAGQAVVLYDGD--- 339 Query: 375 ARVLGGGII 383 RVLGGG I Sbjct: 340 -RVLGGGHI 347 >gi|258539512|ref|YP_003174011.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus rhamnosus Lc 705] gi|257151188|emb|CAR90160.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus rhamnosus Lc 705] Length = 372 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 133/375 (35%), Positives = 187/375 (49%), Gaps = 25/375 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A D D +V Sbjct: 5 NTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDVAKV 61 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 I + +Y ++E+ + + V F Y AG TP P V CN+ +KF L QL AD Sbjct: 62 ASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQLNAD 121 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +A GHY + V D + M R D +DQ+YFL +Q QL FP+G ++K Sbjct: 122 YIAMGHYAQ----VKTDEQGVVHMLRGADGNKDQTYFLSQLSQDQLKKSMFPIGHLQKPE 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A GL A K DS ICF+ + + + A G ++ ++G G H+G+ Sbjct: 178 VRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEKGTHDGL 235 Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 + YTIGQR+GLG+ EP FVV D + + + VG +L + +NW Sbjct: 236 MYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTT 295 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371 +A DG K R Q V + +DDG VDF+ + GQA VFY + Sbjct: 296 G----EAPADGTHMTAKFRYRQRDTGVTIHYHDDGTATVDFDVPVRAITPGQAVVFYDGE 351 Query: 372 SNEARVLGGGIISGS 386 LGGG I + Sbjct: 352 ----ECLGGGTIDAA 362 >gi|257453848|ref|ZP_05619126.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enhydrobacter aerosaccus SK60] gi|257448775|gb|EEV23740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enhydrobacter aerosaccus SK60] Length = 391 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 133/389 (34%), Positives = 211/389 (54%), Gaps = 24/389 (6%) Query: 6 ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65 +T +N D+ +P RV+V MSGGVDSSV A LLK+ G+DV G+ ++ + ++ Sbjct: 4 STAVNLSDI-ASPAQTRVIVGMSGGVDSSVTAVLLKQAGFDVEGLFMKNWEEDDGTEY-- 60 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 C A D+ DA+ V D I + + ++ + + V F + Y+AG TP P + CN+ VK Sbjct: 61 -CTAMTDLADAQAVADKIGIKLHTANFAMEYWDRVFEHFLAEYSAGRTPNPDILCNKEVK 119 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F L LGAD +ATGHY R R + + GK + R +D +DQSYFL A ++ Sbjct: 120 FKAFLDYALTLGADYIATGHYAR-RGFSDETGKAP--LLRGLDNNKDQSYFLHAVAGDKI 176 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+G ++K VR +A + L A K DS ICF+ + ++ D +++ A +GDI Sbjct: 177 AKTLFPVGALEKPEVRRIAEQYDLATAKKKDSTGICFIGERRFKDFLQQYLP--AQKGDI 234 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVGP---RES 297 +G+ +G H+G++ YT+GQR G+G+ + P FV++ D +++R+IVG Sbjct: 235 YTDDGKKIGTHDGLMYYTLGQRGGIGIGGVKDRDEAPWFVLHKDLDNNRLIVGQGHDHPM 294 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQ--DPVPVF-VQRNDDGVYVDFEK 354 L+ + +++W+ D + G++C K R Q VF + D + V F++ Sbjct: 295 LQSTELTAYKLDWVVDAPAQLFTAQGYRCTAKTRYRQPDQACTVFALDETGDTIKVVFDE 354 Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGII 383 + V GQ+CVFY D LGGG+I Sbjct: 355 PQRAVTPGQSCVFYQDDI----CLGGGVI 379 >gi|149191014|ref|ZP_01869275.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio shilonii AK1] gi|148835148|gb|EDL52124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio shilonii AK1] Length = 369 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 125/377 (33%), Positives = 205/377 (54%), Gaps = 32/377 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + + C A +D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+ SR + ++G++ + M R +D +DQSYFL+ + Q+ FP+G+++K V Sbjct: 125 IAMGHYV-SRTF-PENGEKPQ-MLRGLDSNKDQSYFLYTLSHDQVARSLFPVGELEKPEV 181 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A K DS ICF+ + K+ D + R A G I G+++G H G++ Sbjct: 182 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 239 Query: 261 NYTIGQRRGLGVAMG-------EPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLREI 308 +T+GQR+GL + EP +V +KN R ++ L+ + + ++ Sbjct: 240 YHTLGQRKGLHIGGQKGGGGNEEPWYVA--EKNLERNVLIAVQGADHPLLKSNGLRASQL 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVF 367 +W+ +A+ + +C VK R Q +P + +DD + V F++ +V V GQ+ VF Sbjct: 298 HWVS----REAIKEPMQCTVKTRYRQQDIPCTIIPIDDDNIKVIFDEPQVAVTPGQSAVF 353 Query: 368 YTSDSNEARVLGGGIIS 384 Y+ + LGGGII Sbjct: 354 YSDNV----CLGGGIIE 366 >gi|238762225|ref|ZP_04623197.1| tRNA-specific 2-thiouridylase mnmA [Yersinia kristensenii ATCC 33638] gi|238699572|gb|EEP92317.1| tRNA-specific 2-thiouridylase mnmA [Yersinia kristensenii ATCC 33638] Length = 373 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 130/375 (34%), Positives = 202/375 (53%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + +GK R + R +D +DQSYFL+ + +QL FP+G+++K V Sbjct: 125 IATGHYVRRQDV---EGKSR--LLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ D + R A G I+ ++GQ +G H G++ Sbjct: 180 RRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHVGEHQGLM 237 Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREINW 310 +T+GQR+GLG+ +P +VV DK+ + I+ + E R+ ++++W Sbjct: 238 YHTLGQRKGLGIGGTKEGGDDPWYVV--DKDVANNILLVAQGHEHPRLMSVGLIAQQLHW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + + V F+C VK R Q +P V DD V V F++ V GQ+ VFY Sbjct: 296 VD----REPVTAAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDELVAAVTPGQSAVFYQ 351 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 GEV----CLGGGIIE 362 >gi|222823281|ref|YP_002574854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter lari RM2100] gi|254811447|sp|B9KEW8|MNMA_CAMLR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|222538502|gb|ACM63603.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter lari RM2100] Length = 338 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 130/368 (35%), Positives = 199/368 (54%), Gaps = 34/368 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++VAMSGGVDS+V A LK+ G+++IG ++L+ + +++ +V Sbjct: 1 MKILVAMSGGVDSTVTAYKLKQAGHEIIGCYMKLHGKPNYHE--------ENIQKVEKVA 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + +++ D +E F+N V +PF ++Y G+TP PC CNR +K LL + LG + Sbjct: 53 NFLGIKYHILDLQEDFKNQVYMPFINTYKDGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R ++G ++ D +DQSYFL ++ L L FPLG+MKKE V Sbjct: 113 LATGHYARI-----ENG----LIKTAFDDSKDQSYFLANADKEALEYLIFPLGEMKKEDV 163 Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 + A E+ A + +S +ICFV+ Y V+ + + G + +G+ +G+H G Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQF-MDTKIPGIVRDSSGKEVGKHEG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V EP FV+ +D + +IVG +E L+++ L +IN LF Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKIDPKKNEIIVGKKEELKINEFDLEKIN-----LFI 276 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 DA C VKIR P V NDD V ++ G+ASGQ VFY D Sbjct: 277 DA--KELDCEVKIRYRSRSTPCKVMINDDKSAKVILKEPVYGLASGQMAVFYDKD----L 330 Query: 377 VLGGGIIS 384 VL G I+ Sbjct: 331 VLASGFIN 338 >gi|328462804|gb|EGF34672.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus rhamnosus MTCC 5462] Length = 372 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 133/375 (35%), Positives = 187/375 (49%), Gaps = 25/375 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A D D +V Sbjct: 5 NTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDVAKV 61 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 I + +Y ++E+ + + V F Y AG TP P V CN+ +KF L QL AD Sbjct: 62 ASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQLNAD 121 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +A GHY + V D + M R D +DQ+YFL +Q QL FP+G ++K Sbjct: 122 YIAMGHYAQ----VKTDEQGVVHMLRGADGNKDQTYFLSQLSQDQLKKSMFPIGHLQKPE 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A GL A K DS ICF+ + + + A G ++ ++G G H+G+ Sbjct: 178 VRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEKGTHDGL 235 Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 + YTIGQR+GLG+ EP FVV D + + + VG +L + +NW Sbjct: 236 MYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTT 295 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371 +A DG K R Q V + +DDG VDF+ + GQA VFY + Sbjct: 296 G----EAPADGTHMTAKFRYRQRDTGVTIHYHDDGTAIVDFDVPVRAITPGQAVVFYDGE 351 Query: 372 SNEARVLGGGIISGS 386 LGGG I + Sbjct: 352 ----ECLGGGTIDAA 362 >gi|33151616|ref|NP_872969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus ducreyi 35000HP] gi|71153355|sp|Q7U342|MNMA_HAEDU RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|33147837|gb|AAP95358.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus ducreyi 35000HP] Length = 384 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 123/377 (32%), Positives = 205/377 (54%), Gaps = 28/377 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ +V++ MSGGVDSSV A +L++ GY V G+ ++ + + C A D+ DA+ Sbjct: 23 KNKKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---CTAAADLADAQN 79 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LG 137 V D + + + ++ + + V F + Y AG TP P + CN+ +KF L + LG Sbjct: 80 VADRLGIKLHKINFAAEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLEYAAEDLG 139 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY+R D + +++ R +D +DQSYFL+ + QQ+ FP+G+++K Sbjct: 140 ADYIATGHYVRRSA----DNENAQLL-RGLDANKDQSYFLYTLSNQQVAKSLFPVGEIEK 194 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR +A ++GL A K DS ICF+ + K+ + + R A GDI + G+I+GRH+ Sbjct: 195 PMVRQIATDLGLVTAKKKDSTGICFIGERKFKEFLARFLP--AQPGDISTVEGEIVGRHD 252 Query: 258 GIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G++ YT+GQR+GLG+ +P +VV D ++ +IV +L + +++ Sbjct: 253 GLMYYTLGQRKGLGIGGVKGLSEDPFYVVEKDLVNNVLIVAQGHDNSALLSTGLIANQLH 312 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368 W+ + D +C VK R Q + V+ D + + V F++ ++ V GQ+ VFY Sbjct: 313 WVD----RKTIGDTLRCTVKTRYRQTDIACLVEPIDAENIRVIFDEPQIAVTPGQSAVFY 368 Query: 369 TSDSNEARVLGGGIISG 385 + LGGG+I Sbjct: 369 QGEV----CLGGGVIEA 381 >gi|238853983|ref|ZP_04644340.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus gasseri 202-4] gi|238833428|gb|EEQ25708.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus gasseri 202-4] Length = 375 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 133/373 (35%), Positives = 196/373 (52%), Gaps = 25/373 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 ++RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++ S G C A +D D ++V Sbjct: 6 EIRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDDTDDS---GVCTATEDYEDVKKV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + +Y ++E+ + V F + Y G TP P V CN+ +KF L L AD Sbjct: 63 ADEIGIPYYSINFEKDYWERVFEYFLNEYKKGRTPNPDVMCNKEIKFKSFLDFAMDLDAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +A GHY ++ V ++G M RP D +DQ+YFL +Q QL + FPL ++ K Sbjct: 123 YIAMGHYAATK--VDENGIVH--MMRPKDGNKDQTYFLSQLSQDQLKKVIFPLANLTKPQ 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A GL A K DS ICF+ + + + A G +V +G+++G H G+ Sbjct: 179 VREIAIYAGLATAKKKDSTGICFIGERNFKKFLSEFLP--AQSGKMVTPDGKVVGEHAGL 236 Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 + YTIGQR GLG+ +P FVV D + +IV + + +Y ++ G Sbjct: 237 MYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSKLLYATSLDASGVSF 294 Query: 316 F---EDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTS 370 F + +D KC K R Q V V + + D+ V+V+F++ V GQA VFY Sbjct: 295 FTGQPEHDID-LKCTAKFRYRQPDVGVTMHYHAKDNTVHVEFDEPARAVTPGQAIVFY-- 351 Query: 371 DSNEARVLGGGII 383 N LGG I Sbjct: 352 --NGEECLGGATI 362 >gi|326443600|ref|ZP_08218334.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces clavuligerus ATCC 27064] Length = 367 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 142/371 (38%), Positives = 193/371 (52%), Gaps = 26/371 (7%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84 MSGGVDS+V AA G+DV GV L L ++ S R G+ CC +D DARR D I Sbjct: 1 MSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDARRAADVIG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL LG D + TG Sbjct: 60 IPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALALGFDAVCTG 119 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESVRD 202 HY + + DG R + R D+ +DQSY L ++QL FPLGD K+ +R Sbjct: 120 HY--ATVVTLPDGGRE--LHRASDMAKDQSYVLGVLDERQLAHAMFPLGDTLTTKDEIRA 175 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 A GL +A K DS DICF+ G + R+ EGDIV +G LG H G Sbjct: 176 EAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGRA---EGDIVDESGTRLGTHEGAYG 232 Query: 262 YTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 +TIGQR+GL + A G+P +V+ + +RV VGP E+L+V + W G Sbjct: 233 FTIGQRKGLRIGHPAADGKPRYVLDISPVDNRVTVGPAEALDVVGLTAIRPRWCG----- 287 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 A ++R+ PV + DG+ V+F + GVA GQA V Y + RV Sbjct: 288 TAPAGAGAYTAQLRAHGGETPVTAEPVGDGLRVEFAEPVRGVAPGQAIVLY----DGTRV 343 Query: 378 LGGGIISGSKR 388 +G I+ ++R Sbjct: 344 VGSATIASTRR 354 >gi|229552096|ref|ZP_04440821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|229314529|gb|EEN80502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus rhamnosus LMS2-1] Length = 377 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 133/375 (35%), Positives = 187/375 (49%), Gaps = 25/375 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A D D +V Sbjct: 10 NTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDVAKV 66 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 I + +Y ++E+ + + V F Y AG TP P V CN+ +KF L QL AD Sbjct: 67 ASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQLNAD 126 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +A GHY + V D + M R D +DQ+YFL +Q QL FP+G ++K Sbjct: 127 YIAMGHYAQ----VKTDEQGVVHMLRGADGNKDQTYFLSQLSQDQLKKSMFPIGHLQKPE 182 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A GL A K DS ICF+ + + + A G ++ ++G G H+G+ Sbjct: 183 VRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEKGTHDGL 240 Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 + YTIGQR+GLG+ EP FVV D + + + VG +L + +NW Sbjct: 241 MYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTT 300 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371 +A DG K R Q V + +DDG VDF+ + GQA VFY + Sbjct: 301 G----EAPADGTHMTAKFRYRQRDTGVTIHYHDDGTATVDFDVPVRAITPGQAVVFYDGE 356 Query: 372 SNEARVLGGGIISGS 386 LGGG I + Sbjct: 357 ----ECLGGGTIDAA 367 >gi|77360631|ref|YP_340206.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudoalteromonas haloplanktis TAC125] gi|123588218|sp|Q3IH16|MNMA_PSEHT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|76875542|emb|CAI86763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudoalteromonas haloplanktis TAC125] Length = 366 Score = 202 bits (515), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 132/375 (35%), Positives = 201/375 (53%), Gaps = 32/375 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 ++V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A D+ DA+ VC Sbjct: 7 IKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNDEY---CAAADDLKDAQAVC 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L Q LGAD Sbjct: 64 DKLGIELHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAQALGAD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R L DD + +MCR +D +DQSYFL+ + + + FP+GD+ K Sbjct: 124 FIATGHYVRRELR--DD---KYVMCRGLDDNKDQSYFLYTLSHEHIGQTLFPVGDIAKPE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E L DK DS ICF+ + K+ D +++ A G I +G +G H G+ Sbjct: 179 VRRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLP--AQPGVIEDTDGNNVGEHEGL 236 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREIN 309 + +T+GQR+GL + GEP +VV D + +IVG PR L + + +++ Sbjct: 237 MYHTLGQRKGLLIGGMKEGSGEPWYVVDKDLERNVLIVGQGKDHPR--LYSNGLNANQLH 294 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368 W+ D + +C VK R Q+ + + +DG+ V F++ + V GQ+ VFY Sbjct: 295 WV-DRIGPKGTT---RCTVKTRYRQEDLSCTLLVGEDGMARVLFDEPQKAVTPGQSAVFY 350 Query: 369 TSDSNEARVLGGGII 383 D LGGGII Sbjct: 351 AEDV----CLGGGII 361 >gi|227514810|ref|ZP_03944859.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus fermentum ATCC 14931] gi|260663608|ref|ZP_05864497.1| tRNA methyl transferase [Lactobacillus fermentum 28-3-CHN] gi|227086800|gb|EEI22112.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus fermentum ATCC 14931] gi|260551834|gb|EEX24949.1| tRNA methyl transferase [Lactobacillus fermentum 28-3-CHN] Length = 377 Score = 202 bits (515), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 132/372 (35%), Positives = 194/372 (52%), Gaps = 25/372 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A +D D +V Sbjct: 8 RVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATEDYKDVAKVAT 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + G TP P V CN+ +KF + QLGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFTYFIDEFKKGRTPNPDVICNKEIKFKAFIEYANQLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + D+ +M R D +DQ+YFL QL + FPL K+ VR Sbjct: 125 ATGHYADLKR---DEAGNMHLM-RAKDQTKDQTYFLSQLDHAQLDKVLFPLAGYTKKEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 LA++ GL +ADK DS ICF+ + G + + + + A +G++ ++G+++G H G++ Sbjct: 181 QLAKDAGLVVADKKDSVGICFIGEDGHFREFLSQYLP--AQQGEMQTVDGKVVGTHAGLM 238 Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313 YTIGQR+GLG+ +P FV+ D + + VG E L + +I+W+ D Sbjct: 239 YYTIGQRKGLGLGGTKENNDPWFVIGKDITKNVLYVGQGYENEHLYATHMEASDIHWVDD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSD 371 + F C K R Q V V+ +DDG V V + + GQA VFY D Sbjct: 299 VVSRYGTE--FHCTAKFRYRQKDEGVTVKLSDDGQMVTVTSDDPARAITPGQAVVFYDGD 356 Query: 372 SNEARVLGGGII 383 LG II Sbjct: 357 ----ECLGSAII 364 >gi|119470125|ref|ZP_01612891.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alteromonadales bacterium TW-7] gi|119446546|gb|EAW27820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alteromonadales bacterium TW-7] Length = 366 Score = 202 bits (515), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 131/375 (34%), Positives = 200/375 (53%), Gaps = 32/375 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 ++V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A +D+ DA+ VC Sbjct: 7 IKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNDE---YCAAAEDLKDAQAVC 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139 D + + + ++ + + V F Y AG TP P + CN+ +KF L Q LGAD Sbjct: 64 DKLGIELHTVNFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLEFAAQALGAD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R L DD + +MCR +D +DQSYFL+ + + + FP+GD+ K Sbjct: 124 FIATGHYVRRELR--DD---KYVMCRGLDNNKDQSYFLYTLSHEHIAQTLFPVGDIAKPE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E L DK DS ICF+ + K+ D +++ A G I G +G H G+ Sbjct: 179 VRRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLP--AQPGVIEDTEGNNVGEHEGL 236 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREIN 309 + +T+GQR+GL + GEP +VV D + +IVG PR L + + +++ Sbjct: 237 MYHTLGQRKGLLIGGMKEGSGEPWYVVDKDVERNVLIVGQGKDHPR--LYSNGLNANQLH 294 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368 W+ D + +C VK R Q+ + + DDG+ V F++ + V GQ+ VFY Sbjct: 295 WV-DRVGPKGTT---RCTVKTRYRQEDINCTLLVGDDGMARVLFDEPQKAVTPGQSAVFY 350 Query: 369 TSDSNEARVLGGGII 383 + LGGGII Sbjct: 351 AQEV----CLGGGII 361 >gi|170722583|ref|YP_001750271.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas putida W619] gi|205816891|sp|B1JBJ1|MNMA_PSEPW RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|169760586|gb|ACA73902.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas putida W619] Length = 374 Score = 202 bits (515), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 127/380 (33%), Positives = 202/380 (53%), Gaps = 26/380 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+P RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ D Sbjct: 7 KDPAKTRVIVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLAD 63 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ VCD I + + ++ + + V F Y AG TP P + CNR +KF L Sbjct: 64 AQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALS 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD++ATGHY+R R D G ++ + +D +DQSYFL A +++ FP+G++ Sbjct: 124 LGADLIATGHYVRRR----DTGAVTELL-KGLDPNKDQSYFLHAVGGKEIARTLFPVGEL 178 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + GL A K DS ICF+ + ++ D +K+ A G+I G+++GR Sbjct: 179 EKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGEIQTTEGEVIGR 236 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 H+G++ +TIGQR+GLG+ A EP +V++ D + ++VG + E ++ R + Sbjct: 237 HHGLMYHTIGQRQGLGIGGLKDAGDEPWYVLHKDLTRNVLVVG--QGNEHPWLFSRAL-- 292 Query: 311 LGDGLFEDAVVD---GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 L +F +D K+R Q + + G F++ + V GQ+ VF Sbjct: 293 LASEIFWVNPIDLSSPRTLTAKVRYRQSDQRCTLALTESGYRAVFDEPQRAVTPGQSVVF 352 Query: 368 YTSDSNEARVLGGGIISGSK 387 Y + LGGG+I ++ Sbjct: 353 YDGEV----CLGGGVIETAE 368 >gi|21223845|ref|NP_629624.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces coelicolor A3(2)] gi|256785060|ref|ZP_05523491.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces lividans TK24] gi|289768953|ref|ZP_06528331.1| tRNA methyl transferase [Streptomyces lividans TK24] gi|6226260|sp|O86583|MNMA_STRCO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|3402255|emb|CAA20191.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces coelicolor A3(2)] gi|289699152|gb|EFD66581.1| tRNA methyl transferase [Streptomyces lividans TK24] Length = 376 Score = 202 bits (515), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 143/383 (37%), Positives = 200/383 (52%), Gaps = 28/383 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDA 76 + +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G+ CC +D DA Sbjct: 9 RPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDA 67 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RR D I + YV+D +RFR V+ F + Y AG TP PC+ CN +KF+ LL L Sbjct: 68 RRAADVIGIPFYVWDLADRFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALAL 127 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194 G D + TGHY +++ + +DG R + R D+ +DQSY L +QL FPLGD Sbjct: 128 GFDAVCTGHY--AQVILREDGVRE--LHRASDMAKDQSYVLGVLDDRQLAHAMFPLGDTV 183 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQIL 253 K+ +R A GL +A K DS DICF+ G + R+ EGDIV G L Sbjct: 184 TTKDEIRAEAERRGLAVAKKPDSHDICFIADGNTQGFLADRLGKA---EGDIVDEAGNRL 240 Query: 254 GRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 G H G YTIGQR+GL + G+P +V+ + ++ V VGP E+L+V + + Sbjct: 241 GTHEGAYGYTIGQRKGLRIGTPAPDGKPRYVLDISPVNNTVTVGPAEALDVDALRAIKPR 300 Query: 310 WLGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 W G A G + ++R+ V + D + V F + GVA GQA V Y Sbjct: 301 WCG------AAPTGPGTYTAQLRAHGGETEVRAELVDGTLEVTFSEPVRGVAPGQAIVLY 354 Query: 369 TSDSNEARVLGGGIISGSKRSDA 391 + RV+G I+ + R+ A Sbjct: 355 ----DGTRVVGSATIASTTRATA 373 >gi|184155064|ref|YP_001843404.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus fermentum IFO 3956] gi|229486413|sp|B2GB92|MNMA_LACF3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|183226408|dbj|BAG26924.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Lactobacillus fermentum IFO 3956] Length = 377 Score = 202 bits (515), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 132/372 (35%), Positives = 195/372 (52%), Gaps = 25/372 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A +D D +V Sbjct: 8 RVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATEDYKDVAKVAT 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + G TP P V CN+ +KF + QLGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFTYFIDEFKKGRTPNPDVICNKEIKFKAFIEYANQLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + D+ +M R D +DQ+YFL QL + FPL K+ VR Sbjct: 125 ATGHYADLKR---DEAGNMHLM-RAKDQTKDQTYFLSQLDHAQLDKVLFPLAGYTKKEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 LA++ GL +ADK DS ICF+ + G + + + + A +G++ ++G+++G H G++ Sbjct: 181 QLAKDAGLVVADKKDSVGICFIGEDGHFREFLSQYLP--AQQGEMQTVDGKVVGTHAGLM 238 Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313 YTIGQR+GLG+ +P FV+ D + + VG E L + +I+W+ D Sbjct: 239 YYTIGQRKGLGLGGTKENNDPWFVIGKDITKNVLYVGQGYENEHLYATHMEASDIHWVDD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSD 371 + + F C K R Q V V+ +DDG V V + + GQA VFY D Sbjct: 299 VVSRYGME--FHCTAKFRYRQKDEGVTVKLSDDGQMVTVTSDDPARAITPGQAVVFYDGD 356 Query: 372 SNEARVLGGGII 383 LG II Sbjct: 357 ----ECLGSAII 364 >gi|238749636|ref|ZP_04611141.1| tRNA-specific 2-thiouridylase mnmA [Yersinia rohdei ATCC 43380] gi|238712291|gb|EEQ04504.1| tRNA-specific 2-thiouridylase mnmA [Yersinia rohdei ATCC 43380] Length = 373 Score = 202 bits (515), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 130/375 (34%), Positives = 201/375 (53%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + DGK R + R +D +DQSYFL+ + +QL FP+G+++K V Sbjct: 125 IATGHYVRRQDV---DGKSR--LLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ D + R A G I+ ++G+ +G H G++ Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGKHVGEHQGLM 237 Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREINW 310 +T+GQR+GLG+ +P +VV DK+ + I+ + E R+ ++++W Sbjct: 238 YHTLGQRKGLGIGGTKEGGDDPWYVV--DKDVANNILLVAQGHEHPRLMSVGLIAQQLHW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + V F+C VK R Q +P V DD V V F++ V GQ+ VFY Sbjct: 296 VD----RQPVTAAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDEPVAAVTPGQSAVFYQ 351 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 GEV----CLGGGIIE 362 >gi|238758422|ref|ZP_04619599.1| tRNA-specific 2-thiouridylase mnmA [Yersinia aldovae ATCC 35236] gi|238703326|gb|EEP95866.1| tRNA-specific 2-thiouridylase mnmA [Yersinia aldovae ATCC 35236] Length = 373 Score = 202 bits (515), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 131/375 (34%), Positives = 200/375 (53%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEEY---CSAATDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + DGK R + R +D +DQSYFL+ + +QL FP+G+++K V Sbjct: 125 IATGHYVRRQDV---DGKSR--LLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ D + R A G I+ ++GQ +G H G++ Sbjct: 180 RRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHVGEHQGLM 237 Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREINW 310 +T+GQR+GLG+ +P +VV DK+ + I+ + E R+ ++++W Sbjct: 238 YHTLGQRKGLGIGGTKEGGDDPWYVV--DKDLANNILLVAQGHEHPRLMSVGLAAQQLHW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + V F+C VK R Q +P V DD V V F+ V GQ+ VFY Sbjct: 296 VD----RQPVTAPFRCVVKTRYRQQDIPCTVTPLDDERVDVRFDSPVAAVTPGQSAVFYQ 351 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 GEV----CLGGGIIE 362 >gi|325567216|ref|ZP_08143883.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus casseliflavus ATCC 12755] gi|325158649|gb|EGC70795.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus casseliflavus ATCC 12755] Length = 372 Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 136/378 (35%), Positives = 205/378 (54%), Gaps = 25/378 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RVVV MSGGVDSSV A LLK GYDV+G+ ++ ++ + G C A +D D + Sbjct: 4 ENTRVVVGMSGGVDSSVTALLLKEQGYDVVGIFMKNWDD---TDENGVCTATEDYKDVAK 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGA Sbjct: 61 VAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY +++ V ++G M R +D +DQ+YFL +Q+QL FPLG M+K Sbjct: 121 DYVATGHY--AQVTVDENGVTH--MLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGMEKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A GL A K DS +CF+ + + + N A +G++V L+G++ G+H+G Sbjct: 177 EVRAIAERAGLATAKKKDSTGVCFIGEKNFKQFLS--NYLPAKKGNMVTLDGEVKGQHDG 234 Query: 259 IINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 ++ YTI G G G A EP FVV D ++ + VG +L +R+ +I++ Sbjct: 235 LMYYTIGQRQGLGIGGGGATQEPWFVVGKDLATNTLYVGQGFHHPALYAYRLEASQIHFT 294 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTS 370 + +D + F C K R Q VPV V+ D D V F++ + GQA VFY Sbjct: 295 TE---QDRGTE-FSCTAKFRYRQQDVPVTVRLLDGDRAEVIFDEPVRAITPGQAVVFY-- 348 Query: 371 DSNEARVLGGGIISGSKR 388 + LGGG+I + + Sbjct: 349 --DGMECLGGGLIDAAYK 364 >gi|284044473|ref|YP_003394813.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Conexibacter woesei DSM 14684] gi|283948694|gb|ADB51438.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Conexibacter woesei DSM 14684] Length = 519 Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 29/365 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R +VAMSGGVDS+V A L R+ DV+ VTL+L+ + + SCC+ Q V AR + Sbjct: 144 RTLVAMSGGVDSAVAALLAARESGDVVAVTLELWADEQNDGER-SCCSAQAVRFARALAH 202 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H D E F V+ PF +AAG TP PCV CN V+ +L + +LGA L Sbjct: 203 RMGLPHLTLDLREEFSAGVVTPFLDDHAAGLTPNPCVRCNGHVRLDAMLELADRLGAATL 262 Query: 142 ATGHYIR------------SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 ATGHY R + + ++ D +DQ+Y L A L LR Sbjct: 263 ATGHYARVEPAEPVEPAAAPAEHAAAPAEHGPLLRAAADAWKDQTYMLAALAPASLARLR 322 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHL 248 FPLGD+ K VR LA E L +A K++SQD+CF+ + + R +AGIA G++V Sbjct: 323 FPLGDLTKPQVRALAAEAELPVASKAESQDLCFLAGTSRSEFLAR-HAGIAQRPGEVVDA 381 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 G ++G H G +T+GQRRGLGVA EPL+V+ D S+RV+ G R L + +R Sbjct: 382 AGDVIGAHTGHHGFTVGQRRGLGVAAEEPLYVLRTDPASNRVVAGTRAQLATTSVPVRGA 441 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVY----VDFEKSEVGVASGQ 363 DG D VK+R P+P V G + + E+ G A GQ Sbjct: 442 RLHRDGARVD--------RVKLRYRAKPLPARVVGAPAAGTHRRLEIALEEPVDGAAPGQ 493 Query: 364 -ACVF 367 AC+ Sbjct: 494 LACLM 498 >gi|123442025|ref|YP_001006008.1| tRNA-specific 2-thiouridylase MnmA [Yersinia enterocolitica subsp. enterocolitica 8081] gi|205828986|sp|A1JLK6|MNMA_YERE8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|122088986|emb|CAL11797.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 373 Score = 202 bits (514), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 130/375 (34%), Positives = 201/375 (53%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + +GK R + R +D +DQSYFL+ + +QL FP+G+++K V Sbjct: 125 IATGHYVRRQDV---NGKSR--LLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ D + R A G I+ ++GQ +G H G++ Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHVGEHQGLM 237 Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREINW 310 +T+GQR+GLG+ +P +VV DK+ + I+ + E R+ ++++W Sbjct: 238 YHTLGQRKGLGIGGTKEGGDDPWYVV--DKDVANNILLVAQGHEHPRLMSVGLIAQQLHW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + + V F+C VK R Q +P V DD V V F+ V GQ+ VFY Sbjct: 296 VD----REPVTAAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDDPVAAVTPGQSAVFYQ 351 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 GEV----CLGGGIIE 362 >gi|323340632|ref|ZP_08080884.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus ruminis ATCC 25644] gi|323091755|gb|EFZ34375.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus ruminis ATCC 25644] Length = 375 Score = 202 bits (514), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 192/372 (51%), Gaps = 25/372 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLKR GYDV+GV ++ ++ +K S G C +D D +V Sbjct: 7 IRVVVGMSGGVDSSVCAYLLKRQGYDVVGVFMKNWDEKKDS---GVCTVTEDYQDVAKVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + I + +Y ++E+ + + V F Y G TP P V CN+ VKF L +L AD Sbjct: 64 NEIGIPYYSVNFEKEYWDGVFTYFLDEYRHGRTPNPDVMCNKEVKFKAFLDYAMELDADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY +++ DDG + R D +DQ+YFL + +QL FP+G M+K V Sbjct: 124 IAMGHY--AQIKRDDDGTVH--LMRGADQNKDQTYFLSQLSGKQLEKAMFPIGGMQKSEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A++ GL ADK DS +CF+ + + + A G ++ G+ G H G++ Sbjct: 180 REIAKKAGLATADKKDSTGVCFIGERNFSKFLSEFLP--AKPGKMMTFEGEYKGEHFGLM 237 Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 NYTIGQRRGLG+ EP FVV D ++ + VG E L + +++++ Sbjct: 238 NYTIGQRRGLGIGGDGKSNEPWFVVGKDLKTNTLYVGQGYHNEHLYATSLDATKLSFVAP 297 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVFYTSD 371 ED F C K R Q V V ND+ V V F+ + GQ VFY + Sbjct: 298 --IEDR-GQSFHCTAKFRYRQKDSGVTVNFNDERNKVEVVFDNPVRAITPGQEIVFYDGE 354 Query: 372 SNEARVLGGGII 383 LG G I Sbjct: 355 ----ECLGSGTI 362 >gi|114047179|ref|YP_737729.1| tRNA-specific 2-thiouridylase MnmA [Shewanella sp. MR-7] gi|122944742|sp|Q0HW33|MNMA_SHESR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|113888621|gb|ABI42672.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella sp. MR-7] Length = 372 Score = 202 bits (514), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 125/374 (33%), Positives = 203/374 (54%), Gaps = 31/374 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 12 KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLKDAQAVCD 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L L AD Sbjct: 69 KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLDFADDILDADY 128 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 129 IAMGHYVRRR----DNADGTTQMLRGVDNNKDQSYFLYTLSHEQVARSLFPVGELEKHEV 184 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A++MGL DK DS ICF+ + K+ + + N A G+I G+++G+H G++ Sbjct: 185 REIAKKMGLITHDKKDSTGICFIGERKFTEFLG--NYLPAQPGNIETAEGEVIGKHQGLM 242 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ + +P +VV D + ++VG PR L + +++ +++W Sbjct: 243 YHTLGQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPR--LMSNGMFVNQLHW 300 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + V+G + VK R Q +P +D+ + V F++ V GQ+ VFY Sbjct: 301 VD----RKGPVEGSQIVVKTRYRQQDIPCTLTYLDDNTLKVVFDEPVAAVTPGQSAVFYD 356 Query: 370 SDSNEARVLGGGII 383 D LGGGII Sbjct: 357 GDV----CLGGGII 366 >gi|238791830|ref|ZP_04635467.1| tRNA-specific 2-thiouridylase mnmA [Yersinia intermedia ATCC 29909] gi|238728934|gb|EEQ20451.1| tRNA-specific 2-thiouridylase mnmA [Yersinia intermedia ATCC 29909] Length = 373 Score = 202 bits (514), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 129/375 (34%), Positives = 200/375 (53%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + DGK R + R +D +DQSYFL+ + +QL FP+G+++K V Sbjct: 125 IATGHYVRRQDV---DGKSR--LLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ D + R A G I+ ++GQ +G H G++ Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHMGEHQGLM 237 Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREINW 310 +T+GQR+GLG+ +P +VV DK+ + I+ + E R+ ++++W Sbjct: 238 YHTLGQRKGLGIGGTKDGGDDPWYVV--DKDVANNILLVAQGHEHPRLMSVGLIAQQLHW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + + F+C VK R Q +P V D+ V V F+ V GQ+ VFY Sbjct: 296 VD----RQPITAAFRCVVKTRYRQQDIPCTVTPLDNERVEVRFDNPVAAVTPGQSAVFYQ 351 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 GEV----CLGGGIIE 362 >gi|254480686|ref|ZP_05093933.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [marine gamma proteobacterium HTCC2148] gi|214039269|gb|EEB79929.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [marine gamma proteobacterium HTCC2148] Length = 363 Score = 202 bits (514), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 192/370 (51%), Gaps = 26/370 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK GY V G+ ++ + ++ C A +D DA+ V D Sbjct: 8 KVIVGMSGGVDSSVSALLLKEQGYAVEGLFMKNWEEDDGTEY---CTAKEDFADAQAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + ++ + + V F Y AG TP P + CNR +KF L LGAD++ Sbjct: 65 KLGIKLHGANFAAEYWDNVFEHFLDEYRAGRTPNPDILCNREIKFKAFLDYALTLGADLI 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R L G + + + +D +DQSYFL A ++L FP+GD++K VR Sbjct: 125 ATGHYTRLGLAAG-----QATLLKGLDPNKDQSYFLHAVGHRELAKTLFPVGDIEKPEVR 179 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E L A K DS ICF+ + ++ D +++ A GDIV L+G+ LG+H G++ Sbjct: 180 SLAEEYDLATAKKKDSTGICFIGERRFSDFLQQYLP--AQPGDIVSLDGEHLGQHQGLMY 237 Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 +TIGQR+GLG+ +P +VV D +++ ++V +L + E+ W+ Sbjct: 238 HTIGQRQGLGIGGLANHTDDPWYVVEKDLDNNVLLVAQGNDHPALFKSSLVTGEVFWVAG 297 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 +C K+R Q + G V+F+ + + GQ+ VFY ++ Sbjct: 298 A----PPPLPLQCTAKVRYRQSDQSCTITEQKGGYQVEFDAPQRAITPGQSVVFYLGET- 352 Query: 374 EARVLGGGII 383 LGGG+I Sbjct: 353 ---CLGGGVI 359 >gi|239928784|ref|ZP_04685737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291437105|ref|ZP_06576495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291340000|gb|EFE66956.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 378 Score = 202 bits (514), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 142/387 (36%), Positives = 201/387 (51%), Gaps = 28/387 (7%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAG 70 D + + +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G+ CC Sbjct: 3 DTPQPSRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 61 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 +D DARR D I + YV+D +RFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 62 EDSRDARRAADVIGIPFYVWDLADRFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALL 121 Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 LG D + TGHY +++ + +DG R + R D+ +DQSY L +QL F Sbjct: 122 DKALALGFDAVCTGHY--AKVVLREDGTRE--LHRASDMAKDQSYVLGVLDDRQLAHAMF 177 Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVH 247 PLGD KE +R A GL +A K DS DICF+ G + R+ EGDIV Sbjct: 178 PLGDTVTTKEEIRAEAERRGLAVAKKPDSHDICFIADGDTRGFLANRLGRA---EGDIVD 234 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 +G +G H G +TIGQR+GL + G+P +V+ + ++ V VGP +L+V + Sbjct: 235 ESGAKVGTHEGAYGFTIGQRKGLRIGTPAPDGKPRYVLDISPVTNTVTVGPAAALDVTAL 294 Query: 304 YLREINWLGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362 W G A +G + ++R+ V + D + V F + GVA G Sbjct: 295 TAIRPRWCG------AAPEGPGTYTAQLRAHGGETEVTAEPVDGELRVRFTEPVRGVAPG 348 Query: 363 QACVFYTSDSNEARVLGGGIISGSKRS 389 QA V Y + RV+G I+ + RS Sbjct: 349 QAIVLY----DGTRVVGSATIATTVRS 371 >gi|212634687|ref|YP_002311212.1| tRNA-specific 2-thiouridylase MnmA [Shewanella piezotolerans WP3] gi|226704776|sp|B8CLH4|MNMA_SHEPW RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|212556171|gb|ACJ28625.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella piezotolerans WP3] Length = 371 Score = 202 bits (514), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 129/374 (34%), Positives = 202/374 (54%), Gaps = 32/374 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 12 KVIVGMSGGVDSSVSAYLLMKQGYQVEGLFMKNWEEDDTDEY---CAAADDLKDAQAVCD 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 69 KLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDADY 128 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R R DG + M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 129 IAMGHYVRRRDI---DGTSQ--MLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKSEV 183 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 RD+A+EMGL DK DS ICF+ + K+ D + A G+I G+++G+H G++ Sbjct: 184 RDIAKEMGLITHDKKDSTGICFIGERKFTDFLSTFLP--AQPGNIETSEGEVIGQHQGLM 241 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ + +P +VV D + ++VG PR L + + +++W Sbjct: 242 YHTLGQRKGLGIGGLKNSSEDPWYVVEKDLVRNVLVVGQGGNHPR--LMSNGLLANQLHW 299 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYT 369 + +G K +K R Q VP V + DD + V F+++ V GQ+ VFY Sbjct: 300 VD----RKGPAEGAKITLKTRYRQHDVPCTVTYDSDDQIRVIFDEAVAAVTPGQSAVFYD 355 Query: 370 SDSNEARVLGGGII 383 + LGGGII Sbjct: 356 GEI----CLGGGII 365 >gi|227535218|ref|ZP_03965267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187102|gb|EEI67169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 471 Score = 202 bits (514), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 133/375 (35%), Positives = 187/375 (49%), Gaps = 25/375 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 ++RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A D D +V Sbjct: 104 NIRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDVAKV 160 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 I + +Y ++E+ + + V F Y AG TP P V CN+ +KF L QL AD Sbjct: 161 ASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYADQLNAD 220 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +A GHY + V D M R D +DQ+YFL +Q QL FP+G ++K Sbjct: 221 YIAMGHYAQ----VKTDENGIVHMLRGADGNKDQTYFLSQLSQDQLKKSLFPIGHLQKPE 276 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A GL A K DS ICF+ + + + A G ++ ++G +G H+G+ Sbjct: 277 VRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEMGTHDGL 334 Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 + YTIGQR+GLG+ EP FVV D + + + VG +L + +NW Sbjct: 335 MYYTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTT 394 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371 A +G K R Q V + +DDG VDF+ + GQA VFY D Sbjct: 395 G----QAPAEGTHMTAKFRYRQRDTGVTLHYHDDGTATVDFDVPVRAITPGQAVVFYDGD 450 Query: 372 SNEARVLGGGIISGS 386 LGGG I + Sbjct: 451 ----ECLGGGTIDAA 461 >gi|312109803|ref|YP_003988119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus sp. Y4.1MC1] gi|311214904|gb|ADP73508.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus sp. Y4.1MC1] Length = 370 Score = 202 bits (514), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 201/387 (51%), Gaps = 25/387 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K RVVV MSGGVDSSV A LLK++GYDVIGV ++ ++ + G C A +D D +R Sbjct: 2 KKKRVVVGMSGGVDSSVAAYLLKQEGYDVIGVFMKNWDD---TNDDGVCTATEDYEDVKR 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + +Y ++E+ + + V F G TP P V CN +KF + L A Sbjct: 59 VANQLGIPYYSVNFEKEYWDRVFTYFMDELKRGRTPNPDVLCNTEIKFKAFVDYALSLDA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R G + + R DL +DQ+YFL T++ L + FPLG++ K+ Sbjct: 119 DYIATGHYARIRRENG-----QVTLLRGKDLNKDQTYFLSQLTEKHLAKVLFPLGELTKD 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A+E+ L A+K DS ICF+ + + +K N A G+I L+G++LG H+G Sbjct: 174 EVRKIAKELNLVTANKKDSTGICFIGERNFKRFLK--NFLPAQPGEIRSLDGEVLGTHDG 231 Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 ++ YTIGQR+ G GEP +VV D ++ ++V +L + I+++ Sbjct: 232 LMYYTIGQRKGLGIGGKGTGEPWYVVDKDLENNVLLVAQGKNHPALFSTGLIASNISFIN 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371 D F C K R Q+ V V +G V+FEK V GQ VFY +D Sbjct: 292 G----DVRPRTFACTAKFRYRQEDQKVTVHVRPNGTALVEFEKPVKAVTPGQVAVFYDND 347 Query: 372 SNEARVLGGGIISGSKRSDAVEESLLS 398 LG +I + DA ++ S Sbjct: 348 V----CLGSAVIDEVIKMDAANATIAS 370 >gi|307638008|gb|ADN80458.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyl transferase [Helicobacter pylori 908] gi|325996611|gb|ADZ52016.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Helicobacter pylori 2018] gi|325998201|gb|ADZ50409.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Helicobacter pylori 2017] Length = 342 Score = 202 bits (514), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 202/370 (54%), Gaps = 36/370 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78 M++ V +SGGVDSS A LK G++++G+ L+L+ S K D+Y +A++ Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + V D+++ F++AV F ++Y G+TP PC CN +KF L +LG Sbjct: 51 ACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALKHALKLGC 110 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + + + + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 111 EKIATGHYARVK-----EIDKISYIQEAVDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165 Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++ LA +G + +SQ+ICFV++ Y D +K+ + + EG + +L G+I+G Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLKGEIIG 222 Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G + YTIG+R+G + EP FVV +D + +IVG +E L + + + + D Sbjct: 223 THKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELIVGKKEDLATRFLKAKNKSLMKD 282 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F+ + F+K R P FV D+ + V+F++ GVA GQA V Y D Sbjct: 283 --FKSG-----EYFIKARYRSVPAKAFVSLEDEVIEVEFKEPFYGVAKGQALVVYKDDI- 334 Query: 374 EARVLGGGII 383 +LGGG+I Sbjct: 335 ---LLGGGVI 341 >gi|191638296|ref|YP_001987462.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus casei BL23] gi|190712598|emb|CAQ66604.1| Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus casei BL23] gi|327382323|gb|AEA53799.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus casei LC2W] gi|327385523|gb|AEA56997.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus casei BD-II] Length = 443 Score = 202 bits (514), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 133/375 (35%), Positives = 187/375 (49%), Gaps = 25/375 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 ++RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A D D +V Sbjct: 76 NIRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDVAKV 132 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 I + +Y ++E+ + + V F Y AG TP P V CN+ +KF L QL AD Sbjct: 133 ASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYADQLNAD 192 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +A GHY + V D M R D +DQ+YFL +Q QL FP+G ++K Sbjct: 193 YIAMGHYAQ----VKTDENGIVHMLRGADGNKDQTYFLSQLSQDQLKKSLFPIGHLQKPE 248 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A GL A K DS ICF+ + + + A G ++ ++G +G H+G+ Sbjct: 249 VRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEMGTHDGL 306 Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 + YTIGQR+GLG+ EP FVV D + + + VG +L + +NW Sbjct: 307 MYYTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTT 366 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371 A +G K R Q V + +DDG VDF+ + GQA VFY D Sbjct: 367 G----QAPAEGTHMTAKFRYRQRDTGVTLHYHDDGTATVDFDVPVRAITPGQAVVFYDGD 422 Query: 372 SNEARVLGGGIISGS 386 LGGG I + Sbjct: 423 ----ECLGGGTIDAA 433 >gi|302542324|ref|ZP_07294666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces hygroscopicus ATCC 53653] gi|302459942|gb|EFL23035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces himastatinicus ATCC 53653] Length = 372 Score = 202 bits (514), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 146/379 (38%), Positives = 196/379 (51%), Gaps = 24/379 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV GV L L ++ S R G+ CC +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL LG Sbjct: 60 AADVIGIPFYVWDLAERFREDVVEDFIAEYEAGRTPNPCLRCNEKIKFAALLDKALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MK 196 D + TGHY V DD + R D+ +DQSY L ++QL FPLGD Sbjct: 120 DAVCTGHYA---TVVRDDNGVLELH-RASDMAKDQSYVLGVLDERQLAHAMFPLGDTLTT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ +R A GL +A K DS DICF+ G + R + G A EGDIV GQ LG H Sbjct: 176 KDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLSR-HLGTA-EGDIVDEGGQKLGTH 233 Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G +TIGQR+GL + A G+P +V+ + ++ V VGP E+L+V + + W G Sbjct: 234 EGAYGFTIGQRKGLRIGHPAADGKPRYVLDISPVNNTVTVGPVEALDVSALTAIKPRWCG 293 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTS 370 + ++ + V DG + V F + GVA GQA V Y Sbjct: 294 AAPTGPGT---YTAQLRAHGGETEVTAEPVGGADGGELRVSFAEPVRGVAPGQAIVLY-- 348 Query: 371 DSNEARVLGGGIISGSKRS 389 + RV+G I+ ++RS Sbjct: 349 --DGTRVVGSATIAATERS 365 >gi|282890136|ref|ZP_06298667.1| hypothetical protein pah_c013o042 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499987|gb|EFB42275.1| hypothetical protein pah_c013o042 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 375 Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 129/373 (34%), Positives = 197/373 (52%), Gaps = 37/373 (9%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV MSGGVDSSV A LLK GY+VIG+ ++ ++ + G C A +D D RVCD Sbjct: 7 VVVGMSGGVDSSVSALLLKEQGYNVIGMFMKNWDE---TDENGVCPATRDFEDVVRVCDQ 63 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I++ +Y ++ + + + V F G TP P + CNR +KF +L QLGAD LA Sbjct: 64 ISIPYYSVNFVKEYWDNVFSHFIEELKQGHTPNPDILCNREIKFKVMLDKALQLGADFLA 123 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R+ L + + + +D +DQSYFL+A +Q+ L FP+G+++K VR+ Sbjct: 124 TGHYCRNYL-----AESHTQLLKGLDPGKDQSYFLYAISQRALHRALFPIGNLQKSEVRE 178 Query: 203 LAREMGLDIADKSDSQDICFVQQ-------GKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +AR+ GL ++K DS ICF+ + G+Y K G+ ++ G ++G+ Sbjct: 179 IARKHGLSTSEKKDSTGICFIGKRDFKQFLGQYLSFQK---------GNFENVKGDVVGQ 229 Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWL 311 H+G+ YTIGQR+GLG+ G+ FVV D + V++ +L + +++W Sbjct: 230 HDGVAYYTIGQRKGLGIGGQGDAWFVVGKDVERNVVVIDQGTHHPALYASTLTATDLHWH 289 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 L + F C KIR Q +++ +G V V F + + Q+ VFY Sbjct: 290 SPELPKTP----FTCRAKIRYRQTDQDCVIEKMSEGRVEVRFPIPQRAITPRQSIVFY-- 343 Query: 371 DSNEARVLGGGII 383 +E LGG II Sbjct: 344 --DEHVCLGGAII 354 >gi|222151508|ref|YP_002560664.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Macrococcus caseolyticus JCSC5402] gi|222120633|dbj|BAH17968.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Macrococcus caseolyticus JCSC5402] Length = 371 Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 135/368 (36%), Positives = 194/368 (52%), Gaps = 25/368 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D RVC+ Sbjct: 7 KVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYEDVIRVCN 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F Y G TP P V CN+ +KF L +LGAD + Sbjct: 64 QIGIPYYAVNFEQEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHAVKLGADYV 123 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + R +DG M R +D +DQ+YFL TQ+QL + FPLG ++K VR Sbjct: 124 ATGHYAQIRR--SEDGVE---MLRGVDNNKDQTYFLNQLTQEQLSRVMFPLGHLQKPEVR 178 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI--ALEGDIVHLNGQILGRHNGI 259 ++A + L A K DS ICF+ + + K +G A G++ L+G+ +G H+G+ Sbjct: 179 EIALKHDLATAKKKDSTGICFIGERNF----KEFLSGYLPAQNGEMQTLDGKPMGTHSGL 234 Query: 260 INYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 + YTIGQR GLG+ G+P FVV KN ++ + + H + D F + Sbjct: 235 MYYTIGQRHGLGIGGDGDPWFVV--GKNLKDNVLYVEQGFD-HDALYSDYLIASDVSFVN 291 Query: 319 AV--VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375 V +C K R Q V V++ DD + V + + + GQA VFY N Sbjct: 292 PVDLTTPLECTAKFRYRQRDTKVTVEKIDDNTIKVTYAEPVRAITPGQAVVFY----NGE 347 Query: 376 RVLGGGII 383 LGG I Sbjct: 348 VCLGGATI 355 >gi|218779733|ref|YP_002431051.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfatibacillum alkenivorans AK-01] gi|218761117|gb|ACL03583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfatibacillum alkenivorans AK-01] Length = 356 Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 122/365 (33%), Positives = 191/365 (52%), Gaps = 21/365 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA-RRVC 80 R+ +AMSGGVDS + A LLK+ D++G+ + +G+ V + R Sbjct: 4 RIAIAMSGGVDSMISAYLLKQTCRDMVGIHFI-----TGFENEGAPPGPDGVPEPLARAS 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGAD 139 +++ V + +E F V+ PF +Y G TP PC+ CNRTVKF LL R + A+ Sbjct: 59 KELDLPIEVVNLQEEFHTHVVAPFVDTYLKGRTPNPCMVCNRTVKFGALLDAARNRFNAE 118 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R D R + + DL++DQSYFL +Q QL FPLG+ K+ Sbjct: 119 KIATGHYARVR----PDSAGRFRLVKGADLKKDQSYFLGFLSQAQLGAAVFPLGEFTKDQ 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R+ A E+GLD K +SQ+ CF+ +Y D ++ + GD+V++ G+++GRH G+ Sbjct: 175 IREKAVELGLDKYTKPESQETCFIADDRYRDFLQNQPGFPSRPGDVVNVQGEVIGRHQGV 234 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +TIGQRRG+ + E +V +D ++R+ V + L +++ +NW+ Sbjct: 235 FAFTIGQRRGINIPASEAYYVQAIDPAANRITVCFKSGLLSRGVHVGGVNWI-----VPP 289 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + F+ +IR ++ +DG V V F++ + V GQ VFY D VL Sbjct: 290 QKNAFEAATRIRYRHKEAASAIEVLEDGTVNVWFDEPQSAVTPGQGAVFYQEDE----VL 345 Query: 379 GGGII 383 G G I Sbjct: 346 GAGWI 350 >gi|317011534|gb|ADU85281.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori SouthAfrica7] Length = 342 Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 125/370 (33%), Positives = 200/370 (54%), Gaps = 36/370 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78 M++ V +SGGVDSS A LK G++++G+ L+L+ S K D+Y +A++ Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + V D+++ F++AV F ++Y G+TP PC CN +KF L +LG Sbjct: 51 ACEFLGIPLEVLDFQKDFKSAVYDAFIAAYEEGQTPNPCALCNPLMKFGLALDHALKLGC 110 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + + + + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 111 EKIATGHYARIK-----EIDQVSYIREALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKK 165 Query: 199 SVRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++ LA +G + +SQ+ICFV++ Y D +K+ + + EG + +L G+I+G Sbjct: 166 DIKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKK-HVEVEKEGVVKNLQGEIIG 222 Query: 255 RHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G + YTIG+R+G V EP FVV +D + ++VG +E L H + + + + D Sbjct: 223 THKGYVQYTIGKRKGFSVKGALEPHFVVQIDAKKNELVVGKKEDLATHFLKAQNKSLMKD 282 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F+ + F+K R P V D + V F++ GVA GQA V Y D Sbjct: 283 --FKSG-----EYFIKARYRSMPTKALVSLKDGMIEVGFKEPFYGVAKGQALVVYEDDI- 334 Query: 374 EARVLGGGII 383 VLGGG+I Sbjct: 335 ---VLGGGVI 341 >gi|238796003|ref|ZP_04639515.1| tRNA-specific 2-thiouridylase mnmA [Yersinia mollaretii ATCC 43969] gi|238720208|gb|EEQ12012.1| tRNA-specific 2-thiouridylase mnmA [Yersinia mollaretii ATCC 43969] Length = 373 Score = 202 bits (513), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 129/375 (34%), Positives = 200/375 (53%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + +GK R + R +D +DQSYFL+ + +QL FP+G+++K V Sbjct: 125 IATGHYVRRQDV---NGKSR--LLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ D + R A G I+ ++GQ +G H G++ Sbjct: 180 RRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHMGEHQGLM 237 Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREINW 310 +T+GQR+GLG+ +P +VV DK+ + I+ + E R+ ++++W Sbjct: 238 YHTLGQRKGLGIGGTKDGGDDPWYVV--DKDVANNILLVAQGHEHPRLMSVGLIAQQLHW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + + F+C VK R Q +P V DD V V F+ V GQ+ VFY Sbjct: 296 VD----RQPITAAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDDPVAAVTPGQSAVFYQ 351 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 GEV----CLGGGIIE 362 >gi|315126737|ref|YP_004068740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudoalteromonas sp. SM9913] gi|315015251|gb|ADT68589.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudoalteromonas sp. SM9913] Length = 366 Score = 202 bits (513), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 133/375 (35%), Positives = 203/375 (54%), Gaps = 32/375 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 ++V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA+ VC Sbjct: 7 IKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLKDAQAVC 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L Q LGAD Sbjct: 64 DKLGIELHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAQALGAD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R L DD + +MCR +D +DQSYFL+ + + FP+GD+ K Sbjct: 124 FIATGHYVRRELR--DD---KYVMCRGLDDNKDQSYFLYTLGHEHIAQTLFPVGDIAKPE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E L DK DS ICF+ + K+ D +++ A G I +G +G H G+ Sbjct: 179 VRRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLP--AQPGVIEDTDGNNVGEHEGL 236 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREIN 309 + +T+GQR+GL + GEP +VV D + +IVG PR L + + +++ Sbjct: 237 MYHTLGQRKGLLIGGMKEGSGEPWYVVDKDVERNVLIVGQGKNHPR--LYSNGLNANQLH 294 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368 W+ D + +C VK R Q+ + + +DG+ V F++ + V GQ+ VFY Sbjct: 295 WV-DRVGPQGTT---RCTVKTRYRQEDLSCTLLVGEDGMARVLFDEPQKAVTPGQSAVFY 350 Query: 369 TSDSNEARVLGGGII 383 +NE LGGGII Sbjct: 351 ---ANEV-CLGGGII 361 >gi|299783033|gb|ADJ41031.1| tRNA methyl transferase [Lactobacillus fermentum CECT 5716] Length = 377 Score = 202 bits (513), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 132/372 (35%), Positives = 194/372 (52%), Gaps = 25/372 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A +D D +V Sbjct: 8 RVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATEDYKDVAKVAT 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + G TP P V CN+ +KF + QLGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFTYFIDEFKKGRTPNPDVICNKEIKFKAFIEYANQLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + D+ +M R D +DQ+YFL QL + FPL K+ VR Sbjct: 125 ATGHYADLKR---DEAGNMHLM-RAKDQTKDQTYFLSQLDHAQLDKVLFPLAGYTKKEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 LA++ GL +ADK DS ICF+ + G + + + + A +G++ ++G+++G H G++ Sbjct: 181 QLAKDAGLVVADKKDSVGICFIGEDGHFREFLSQYLP--AQQGEMQTVDGKVVGTHAGLM 238 Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313 YTIGQR+GLG+ +P FV+ D + + VG E L + +I+W+ D Sbjct: 239 YYTIGQRKGLGLGGTKENNDPWFVIGKDITKNVLYVGQGYENEHLYATHMEASDIHWVDD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSD 371 + F C K R Q V V+ +DDG V V + + GQA VFY D Sbjct: 299 VVSRYGXE--FHCTAKFRYRQKDEGVTVKLSDDGQMVTVTSDDPARAITPGQAVVFYDGD 356 Query: 372 SNEARVLGGGII 383 LG II Sbjct: 357 ----ECLGSAII 364 >gi|329767202|ref|ZP_08258729.1| tRNA-specific 2-thiouridylase mnmA [Gemella haemolysans M341] gi|328836869|gb|EGF86516.1| tRNA-specific 2-thiouridylase mnmA [Gemella haemolysans M341] Length = 370 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 132/372 (35%), Positives = 191/372 (51%), Gaps = 25/372 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + +VVV MSGGVDSSV A LLK+ GYDVIGV ++ + + +G C A +D D +V Sbjct: 4 NKKVVVGMSGGVDSSVTAYLLKQQGYDVIGVFMKNWEEKDD---RGVCLAEKDYEDVIKV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C+ +++ +Y ++E+ + + V F Y G TP P + CN+ +KF L LGAD Sbjct: 61 CEQLDIPYYSINFEKEYWDKVFTYFLDEYKKGRTPNPDIMCNKEIKFKVFLEYAEDLGAD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + D R+M R +D +DQ+YFL Q Q+ ++ FP+G+++K+ Sbjct: 121 YVATGHYARVK-----DVDGERLMLRGVDNNKDQTYFLSQLKQHQIKNILFPVGELEKKD 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E GL A K DS ICF+ + + + + + A G +V L+G I G H G+ Sbjct: 176 VRKIAEEAGLATAKKKDSTGICFIGEKNFREFLSQYLP--AQGGKMVDLDGNIRGEHIGL 233 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREINWLG 312 ++YTIGQR GLG+ GE F L+ N V G L Sbjct: 234 MHYTIGQRHGLGIGGTKDTEGEAWFACGKDLENNVLYVCQGFHNEKLYSDSLLASSLSF- 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSD 371 ++ + F C K R Q V V+ D+ V V +++ V GQA VFY D Sbjct: 293 --TTKNPQPNKFTCTAKFRYRQPDTEVEVEVLEDNKVKVVYKEPVRAVTPGQAVVFYDGD 350 Query: 372 SNEARVLGGGII 383 LGG II Sbjct: 351 V----CLGGAII 358 >gi|317491853|ref|ZP_07950288.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920287|gb|EFV41611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 367 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 126/373 (33%), Positives = 202/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEE---DDNEEYCSAATDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R DG + + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 125 IATGHYVRRRDI---DGTTQ--LLRGVDTNKDQSYFLYTLSHEQVAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ D + R A G I+ ++G+ +G+H G++ Sbjct: 180 RKIAEQLDLATAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIMTVDGEEIGQHQGLM 237 Query: 261 NYTIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +T+GQR+GLG+ GE P +VV D ++ ++V SL + ++++W+ Sbjct: 238 YHTLGQRKGLGIGGTKDGGEDPWYVVEKDLENNVLLVAQGHDHPSLYSQGLIAQQLHWVD 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 V + F+C VK R Q + V DD + V F++ V GQ+ VFY + Sbjct: 298 ----RKTVTEPFRCVVKTRYRQPDIACTVTPIDDERIEVRFDEPVAAVTPGQSAVFYIDE 353 Query: 372 SNEARVLGGGIIS 384 LGGG+I Sbjct: 354 V----CLGGGVIE 362 >gi|289705112|ref|ZP_06501516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Micrococcus luteus SK58] gi|289558140|gb|EFD51427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Micrococcus luteus SK58] Length = 378 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 145/382 (37%), Positives = 195/382 (51%), Gaps = 25/382 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+V+ AMSGGVDS+V AA G+DV+GV L L + + R GS CC +D DA R Sbjct: 1 MKVLAAMSGGVDSAVAAARAVDAGHDVVGVHLAL-SRMPGTLRTGSRGCCTIEDASDAWR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + Y +D+ ERF V+ F + Y AG TP PC+ CN +KF+ LL +LG Sbjct: 60 ACERLGIPFYTWDFSERFAEDVVDDFVAEYEAGRTPNPCMRCNERIKFAALLERALELGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197 D + TGHY R G DG + R D +DQSY L T QL FPL D K Sbjct: 120 DAVCTGHYAAVR--PGPDGSLE--LHRAADDAKDQSYVLGVLTSDQLAHCLFPLADTPSK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRH 256 E VR A E GL +A K DS DICF+ G + +RI+ G IV GQ LG H Sbjct: 176 ELVRAEAAERGLSVAAKPDSHDICFIPDGDTRGWLAERIDLA---PGPIVDAEGQELGTH 232 Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G +T+GQR+GL + G+P FV+ + + V+VG RE L+V RI +W G Sbjct: 233 AGAQAFTVGQRKGLAIGRPAPDGKPRFVLEVRPKENTVVVGGRELLDVDRITGIRPSWAG 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDD----GVYVDFEKSEVGVASGQACVF 367 + E F C ++ R+ + V QR D+ G ++ + GVA GQ V Sbjct: 293 APVPEARTGAWFDCALQFRAHGEIVEARARQRADEAGNPGWEIEPARPLRGVAPGQTAVL 352 Query: 368 YTSDSNEARVLGGGIISGSKRS 389 Y RVLG I ++ + Sbjct: 353 YRG----TRVLGQATIDTARNA 370 >gi|116494783|ref|YP_806517.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, PP-loop ATPase [Lactobacillus casei ATCC 334] gi|301066347|ref|YP_003788370.1| putative tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Lactobacillus casei str. Zhang] gi|122263799|sp|Q039P7|MNMA_LACC3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|116104933|gb|ABJ70075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus casei ATCC 334] gi|300438754|gb|ADK18520.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, PP-loop ATPase [Lactobacillus casei str. Zhang] Length = 377 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 133/375 (35%), Positives = 187/375 (49%), Gaps = 25/375 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 ++RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A D D +V Sbjct: 10 NIRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDVAKV 66 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 I + +Y ++E+ + + V F Y AG TP P V CN+ +KF L QL AD Sbjct: 67 ASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYADQLNAD 126 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +A GHY + V D M R D +DQ+YFL +Q QL FP+G ++K Sbjct: 127 YIAMGHYAQ----VKTDENGIVHMLRGADGNKDQTYFLSQLSQDQLKKSLFPIGHLQKPE 182 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A GL A K DS ICF+ + + + A G ++ ++G +G H+G+ Sbjct: 183 VRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEMGTHDGL 240 Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 + YTIGQR+GLG+ EP FVV D + + + VG +L + +NW Sbjct: 241 MYYTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTT 300 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371 A +G K R Q V + +DDG VDF+ + GQA VFY D Sbjct: 301 G----QAPAEGTHMTAKFRYRQRDTGVTLHYHDDGTATVDFDVPVRAITPGQAVVFYDGD 356 Query: 372 SNEARVLGGGIISGS 386 LGGG I + Sbjct: 357 ----ECLGGGTIDAA 367 >gi|256850945|ref|ZP_05556334.1| tRNA methyl transferase [Lactobacillus jensenii 27-2-CHN] gi|260661159|ref|ZP_05862073.1| tRNA methyl transferase [Lactobacillus jensenii 115-3-CHN] gi|282934142|ref|ZP_06339420.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus jensenii 208-1] gi|256616007|gb|EEU21195.1| tRNA methyl transferase [Lactobacillus jensenii 27-2-CHN] gi|260548096|gb|EEX24072.1| tRNA methyl transferase [Lactobacillus jensenii 115-3-CHN] gi|281301756|gb|EFA94022.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus jensenii 208-1] Length = 375 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 198/389 (50%), Gaps = 29/389 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDV+GV ++ ++ + G C A +D D +RV Sbjct: 7 IRVVVGMSGGVDSSVSALLLKEAGYDVVGVFMKNWDD---TDDAGVCTATEDYEDVKRVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + V F S Y G TP P + CN +KF L L AD Sbjct: 64 DKIGIPYYSINFEKEYWQRVFEYFLSEYKKGRTPNPDIMCNTEIKFKSFLEFAMSLDADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY ++ V D +M RP D +DQ+YFL +Q+Q+ + FPL ++ K V Sbjct: 124 IAMGHYAKT---VKDKNGVTHMM-RPKDGNKDQTYFLSQLSQEQIKHVIFPLANLTKPQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A GL A K DS ICF+ + + + A G +V +G ++G H+G++ Sbjct: 180 REIAERAGLATAKKKDSTGICFIGERNFKKFLSEFLP--AKPGKMVTPDGNVVGNHSGLM 237 Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 YTIGQR+GLG+ + P FVV D + +IV + + R+Y + G + Sbjct: 238 YYTIGQRQGLGLGSTKESTAPWFVVGKDLKKNELIV--EQGYDSPRLYATSLKASGMSFY 295 Query: 317 ---EDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSD 371 D V+ F C K R Q V V V+ + D V F++ V GQA V Y + Sbjct: 296 TGNPDHDVE-FDCTAKFRYRQADVAVHVKYHAADKTCDVYFDEPARAVTPGQALVLYKGE 354 Query: 372 SNEARVLGGGIISGSKRSDAVEESLLSVI 400 LGGG I + + EE L ++ Sbjct: 355 ----ECLGGGNIDAAYQ----EEKQLQLV 375 >gi|239631620|ref|ZP_04674651.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526085|gb|EEQ65086.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 376 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 133/375 (35%), Positives = 187/375 (49%), Gaps = 25/375 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 ++RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A D D +V Sbjct: 9 NIRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDVAKV 65 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 I + +Y ++E+ + + V F Y AG TP P V CN+ +KF L QL AD Sbjct: 66 ASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYADQLNAD 125 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +A GHY + V D M R D +DQ+YFL +Q QL FP+G ++K Sbjct: 126 YIAMGHYAQ----VKTDENGIVHMLRGADGNKDQTYFLSQLSQDQLKKSLFPIGHLQKPE 181 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A GL A K DS ICF+ + + + A G ++ ++G +G H+G+ Sbjct: 182 VRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEMGTHDGL 239 Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 + YTIGQR+GLG+ EP FVV D + + + VG +L + +NW Sbjct: 240 MYYTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLNWTT 299 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371 A +G K R Q V + +DDG VDF+ + GQA VFY D Sbjct: 300 G----QAPAEGTHMTAKFRYRQRDTGVTLHYHDDGTATVDFDVPVRAITPGQAVVFYDGD 355 Query: 372 SNEARVLGGGIISGS 386 LGGG I + Sbjct: 356 ----ECLGGGTIDAA 366 >gi|257892743|ref|ZP_05672396.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium 1,231,408] gi|257829122|gb|EEV55729.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium 1,231,408] Length = 373 Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 143/379 (37%), Positives = 202/379 (53%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D +V Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAA 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + N V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWNRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R +D +DQ+YFL +Q+QL FPLG M+K VR Sbjct: 125 ATGHYAQ----VTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGMEKSEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS ICF+ + + + N A +G++V L+G++ G+H G++ Sbjct: 181 AIAERAGLATAKKKDSTGICFIGEKNFKQFLS--NYLPAKKGNMVTLDGEVKGQHAGLMY 238 Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314 YTIGQR+GLG+ G EP FVV D ++ + VG +L + EI++ + Sbjct: 239 YTIGQRQGLGIGGGGNSQEPWFVVGKDLATNTLYVGQGFHHPALYATSLDASEIHFTTN- 297 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + + FKC K R Q VPV V+ DD V F++ + GQA VFY + Sbjct: 298 ---EPMPKEFKCTAKFRYRQQDVPVTVRLLDDNRAEVVFDEPVRAITPGQAVVFY----D 350 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I + + V Sbjct: 351 GMECLGGGLIDHAYQETKV 369 >gi|301065024|ref|ZP_07205369.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [delta proteobacterium NaphS2] gi|300440873|gb|EFK05293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [delta proteobacterium NaphS2] Length = 363 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 128/376 (34%), Positives = 191/376 (50%), Gaps = 29/376 (7%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+ ++++VA+SGGVDSS+ AA LK G+ V G+ L + S+++ + Sbjct: 9 KSSNALKILVALSGGVDSSMAAAFLKGAGHRVHGLHFVLPSPADISQKR--------ISK 60 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ + + + + FD F +I PF +Y G TP PCV CN +KF + + Sbjct: 61 AKEISEHLQIPLTTFDLRPIFETELIAPFVDAYLKGLTPNPCVRCNPLIKFEQMYRHLKT 120 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRI-MCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 D +ATGHY+R R GK + + R D +DQSYFL Q+QL FPLG Sbjct: 121 FQFDFMATGHYVRIR----RKGKNSPVTLWRGKDRLKDQSYFLHRLGQRQLAKTIFPLGH 176 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV--KRINAGIALEGDIVHLNGQI 252 M K +R AR+MG+ ++ +SQ+ICF+ Y + + ++ NA +G I++L G+ Sbjct: 177 MTKTEIRFQARKMGIPSSEDPESQEICFIPNMDYRNFIESRKKNASFQ-KGPIINLKGET 235 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G H+GI YT+GQR GLG+A P +V L + VIVG RE L + + +W+ Sbjct: 236 VGEHSGIHRYTVGQRHGLGIASSRPYYVKTLKPEDNCVIVGRREDLFSKGVAATDFHWIT 295 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG---VYVDFEKSEVGVASGQACVFYT 369 FE +D V+ R P + D V F + ++ + GQA V Y Sbjct: 296 P--FEPGSLDSLSGQVRYRHK----PAGGRLEIDASRRVRFIFHRPQMAITPGQALVCYQ 349 Query: 370 SDSNEARVLGGGIISG 385 D RVLGGG I G Sbjct: 350 GD----RVLGGGWIVG 361 >gi|83645146|ref|YP_433581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Hahella chejuensis KCTC 2396] gi|123533626|sp|Q2SJL8|MNMA_HAHCH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|83633189|gb|ABC29156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Hahella chejuensis KCTC 2396] Length = 364 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 130/373 (34%), Positives = 199/373 (53%), Gaps = 26/373 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV+V +SGGVDSSV A LLK GY+V G+ ++ ++ ++ C A D+ DA++ Sbjct: 5 RNQRVIVGISGGVDSSVSAYLLKALGYEVEGLFMKNWDEDDGTE---YCTALSDLEDAQK 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD + + + + + + V F Y AG TP P + CN+ +KF L + LG Sbjct: 62 VCDKLGIKLHTASFSAEYWDRVFEHFLDEYRAGRTPNPDILCNKEIKFKAFLDYAQALGG 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ATGHY + + G+ +M + D ++QSYFL A Q L FP+G + K+ Sbjct: 122 DLIATGHYAQFSRF----GEHTYLM-KGADPSKEQSYFLHAVPGQALARTLFPVGGLLKK 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +ARE+ L DK DS ICF+ + K+ D +K A G IV G+ +GRH G Sbjct: 177 EVRRIARELDLITHDKKDSTGICFIGERKFSDFLKTYLP--AQPGKIVTDKGEEIGRHQG 234 Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINW 310 ++ +TIGQR+GLG+ P +VV D +++ ++V G L + +++W Sbjct: 235 LMYHTIGQRQGLGIGGLKGYDDAPWYVVEKDLDNNELVVAQGGDHPRLFSAGLTASKLDW 294 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 + +G+ F C+ K R Q V D GV V F+K + V GQ+ VFY Sbjct: 295 I-NGV---PAKSSFSCYAKTRYRQPDQLCRVDVQDGGVRVTFDKRQRAVTPGQSVVFY-- 348 Query: 371 DSNEARVLGGGII 383 + AR LGGG+I Sbjct: 349 --DGARCLGGGVI 359 >gi|156934382|ref|YP_001438298.1| tRNA-specific 2-thiouridylase MnmA [Cronobacter sakazakii ATCC BAA-894] gi|166234851|sp|A7MFV2|MNMA_ENTS8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|156532636|gb|ABU77462.1| hypothetical protein ESA_02213 [Cronobacter sakazakii ATCC BAA-894] Length = 369 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 133/375 (35%), Positives = 201/375 (53%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEDY---CTAASDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGIELHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V DGK R + R +D +DQSYFL+ Q+ FP+G+++K V Sbjct: 125 IATGHYVR-RADV--DGKSR--LLRGLDGNKDQSYFLYTLGHDQVAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+ L A K DS ICF+ + K+ + + R A G IV ++G +G H G++ Sbjct: 180 RRIAEELDLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIVTVDGDTIGEHQGLM 237 Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ EP +VV D ++ +IV PR L + ++++W Sbjct: 238 YHTLGQRKGLGIGGTKDGGEEPWYVVDKDVENNILIVAQGHDHPR--LMSVGLIAQQLHW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + + V F C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 296 VD----REPVTAPFTCSVKTRYRQADIPCTVRPLDDDRIEVVFDEPVAAVTPGQSAVFYL 351 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 GEV----CLGGGIIE 362 >gi|260597502|ref|YP_003210073.1| tRNA-specific 2-thiouridylase MnmA [Cronobacter turicensis z3032] gi|260216679|emb|CBA30030.1| tRNA-specific 2-thiouridylase mnmA [Cronobacter turicensis z3032] Length = 369 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 132/375 (35%), Positives = 202/375 (53%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGED---YCTAASDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGIELHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V +GK R + R +D +DQSYFL+ Q+ FP+G+++K V Sbjct: 125 IATGHYVR-RADV--NGKSR--LLRGLDGNKDQSYFLYTLGHDQVAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+ L A K DS ICF+ + K+ + + R A G IV ++G ++G H G++ Sbjct: 180 RRIAEELDLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIVTVDGDVIGEHQGLM 237 Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ EP +VV D ++ +IV PR L + ++++W Sbjct: 238 YHTLGQRKGLGIGGTKDGGEEPWYVVDKDVENNILIVAQGHDHPR--LMSVGLIAQQLHW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + + V F C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 296 VD----REPVTAPFTCTVKTRYRQADIPCTVRPLDDDRIEVLFDEPVAAVTPGQSAVFYL 351 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 GEV----CLGGGIIE 362 >gi|328885206|emb|CCA58445.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces venezuelae ATCC 10712] Length = 381 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 141/379 (37%), Positives = 198/379 (52%), Gaps = 26/379 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDA 76 K +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G+ CC +D DA Sbjct: 3 KTLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL L Sbjct: 62 RRAADVIGIPFYVWDLAERFREDVVDDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALAL 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194 G D + TGHY + + + +DG R + R D+ +DQSY L ++QL FPLGD Sbjct: 122 GFDAVCTGHY--ATVVLNEDGSRE--LHRASDMAKDQSYVLGVLDEKQLAHAMFPLGDTL 177 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQIL 253 K+ +R A GL +A K DS DICF+ G + R+ EGDIV G + Sbjct: 178 TTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGRA---EGDIVDEAGAKV 234 Query: 254 GRHNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 G H G +TIGQR+GL + A G+P +V+ + ++ V VGP E+L+V + + Sbjct: 235 GTHEGAYGFTIGQRKGLRIGHPAADGKPRYVLDISPVNNTVTVGPVEALDVTALTAIKPR 294 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 W G + + ++R+ V D + V F++ GVA GQA V Y Sbjct: 295 WCGTAPEGEG-----RYTAQLRAHGGETEVTASLADGELTVSFDEPVRGVAPGQAIVLY- 348 Query: 370 SDSNEARVLGGGIISGSKR 388 + RV+G I+ + R Sbjct: 349 ---DGTRVVGSATIATTVR 364 >gi|297205825|ref|ZP_06923220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus jensenii JV-V16] gi|297148951|gb|EFH29249.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus jensenii JV-V16] Length = 375 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 198/389 (50%), Gaps = 29/389 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDV+GV ++ ++ + G C A +D D +RV Sbjct: 7 IRVVVGMSGGVDSSVSALLLKEAGYDVVGVFMKNWDD---TDDAGVCTATEDYEDVKRVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + V F S Y G TP P + CN +KF L L AD Sbjct: 64 DKIGIPYYSINFEKEYWQRVFEYFLSEYKKGRTPNPDIMCNTEIKFKSFLEFAMSLDADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY ++ V D +M RP D +DQ+YFL +Q+Q+ + FPL ++ K V Sbjct: 124 IAMGHYAKT---VKDKNGVTHMM-RPKDGNKDQTYFLSQLSQEQIKHVIFPLANLTKPQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A GL A K DS ICF+ + + + A G +V +G ++G H+G++ Sbjct: 180 REIAERSGLATAKKKDSTGICFIGERNFKKFLSEFLP--AKPGKMVTPDGNVVGNHSGLM 237 Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 YTIGQR+GLG+ + P FVV D + +IV + + R+Y + G + Sbjct: 238 YYTIGQRQGLGLGSTKESTAPWFVVGKDLKKNELIV--EQGYDSPRLYATSLKASGMSFY 295 Query: 317 ---EDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSD 371 D V+ F C K R Q V V V+ + D V F++ V GQA V Y + Sbjct: 296 TGNPDHDVE-FDCTAKFRYRQADVAVHVKYHAADKTCDVYFDEPARAVTPGQALVLYKGE 354 Query: 372 SNEARVLGGGIISGSKRSDAVEESLLSVI 400 LGGG I + + EE L ++ Sbjct: 355 ----ECLGGGNIDAAYQ----EEKQLQLV 375 >gi|295425130|ref|ZP_06817835.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus amylolyticus DSM 11664] gi|295065189|gb|EFG56092.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus amylolyticus DSM 11664] Length = 375 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 136/381 (35%), Positives = 197/381 (51%), Gaps = 25/381 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K RVVV MSGGVDSSV A LLK+ GYDVIGV ++ ++ + G C A +D D ++ Sbjct: 5 KKKRVVVGMSGGVDSSVSALLLKQQGYDVIGVFMKNWDD---TDDAGVCTATEDYEDVKK 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + +Y ++E+ + + V F + Y G TP P V CN +KF L L A Sbjct: 62 VADKIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLEFAMDLDA 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +A GHY ++ V D+ +M RP D +DQ+YFL +Q+Q+ + FPL D+ K Sbjct: 122 DYIAMGHYAKT---VKDENGIVHMM-RPKDGNKDQTYFLSQLSQEQIKKVIFPLADLTKP 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A GL A K DS ICF+ + + + A G +V +G ++G H G Sbjct: 178 QVREIALANGLATAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGHVVGEHAG 235 Query: 259 IINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 ++ YTIGQR+GLG+ +P FVV D + +IV + + +Y E+ Sbjct: 236 LMYYTIGQRQGLGLGSTKQSTDPWFVVGKDLKKNELIV--EQGYDSKLLYATELKASDMS 293 Query: 315 LF---EDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYT 369 F D V+ F C K R Q V V V+ + ++ V V F++ V GQA V Y Sbjct: 294 FFTGKPDHDVE-FHCSAKFRYRQCDVGVTVKYHAAENSVDVFFDEPARAVTPGQALVLY- 351 Query: 370 SDSNEARVLGGGIISGSKRSD 390 N LGGG I + + + Sbjct: 352 ---NGEECLGGGFIDAAYQHE 369 >gi|257467821|ref|ZP_05631917.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|317062110|ref|ZP_07926595.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|313687786|gb|EFS24621.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium ulcerans ATCC 49185] Length = 346 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 128/375 (34%), Positives = 193/375 (51%), Gaps = 45/375 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 + V+ MSGGVDSSV A LLK GY+VIGVTL N +K +++ A+R+CD Sbjct: 5 KAVIGMSGGVDSSVGAYLLKEQGYEVIGVTL---NHKKEK------SLNEEIKAAQRICD 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H + D EE F+ VI F Y+ G TP PCV C+ VK L + GA + Sbjct: 56 FLGIEHKIIDIEELFQKEVIDDFLEGYSQGITPSPCVICDERVKMRVLFETADKEGAYFV 115 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY S + ++ K R ++ D +DQSY L+ ++ L FPL +K+ +R Sbjct: 116 ATGHY--SSVEYSEEFK-RDLLKVSYDPRKDQSYMLYRLDNDKISRLLFPLHSYEKKQIR 172 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A+ +GL++ DK DSQ ICF ++G Y + +++ +G+ + NG I+G H G Sbjct: 173 EIAKNIGLEVHDKEDSQGICFAKEG-YIEFLRKNLGDKIKKGNFIDSNGNIMGEHEGYQL 231 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQRRGLG+ + F+ ++K + + +G E L R+ L++ Sbjct: 232 YTIGQRRGLGLKLPRAYFITKINKEKNEITIGEYEELYQKRVELKK-------------- 277 Query: 322 DGFKCFVKIRSSQDPV----PVF--------VQRNDDGVYVDFEKSEVGVASGQACVFYT 369 FK VKI D P F + ++ ++ +F++ A GQ V Y Sbjct: 278 --FKLSVKITDILDKKIIGRPRFSSFGASGKILFENEKLFFEFDEENPQTAPGQHLVLYY 335 Query: 370 SDSNEARVLGGGIIS 384 + VLGGGIIS Sbjct: 336 KN----LVLGGGIIS 346 >gi|262037400|ref|ZP_06010864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Leptotrichia goodfellowii F0264] gi|261748562|gb|EEY35937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Leptotrichia goodfellowii F0264] Length = 364 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 120/372 (32%), Positives = 194/372 (52%), Gaps = 25/372 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + +V+V MSGG+DSSV A LLK +GY+VIGVTL+ + +CC+ D+ DA+ Sbjct: 7 NKKVIVGMSGGIDSSVAALLLKNEGYEVIGVTLKHLPDELSENPGKTCCSLDDISDAKMT 66 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C T+ + HY + E F+ V+ F Y G+TP PC+ C+ VK L+ + G Sbjct: 67 CYTLGIPHYTINVVEEFQKEVMDYFIKMYNEGKTPSPCIICDEKVKIKKLVDFADKTGVK 126 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + + ++ + +DQSY L+ + + FPL + +K + Sbjct: 127 YIATGHYSKKSM--------NNLLLWDENNPKDQSYMLYRLDKSVIERFLFPLSEYEKPT 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A+E G+ K DSQ ICF G Y +K++ +G+ + NG+I+G H G Sbjct: 179 VRQIAKENGIHTHAKPDSQGICFAPDG-YISFLKKMLGDSVKKGNFIDKNGKIIGEHIGY 237 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YT+GQRRGLG+ +G P F+ + ++ +++G E L + I + IN+ +E A Sbjct: 238 QFYTVGQRRGLGLNLGRPFFISEIRPETNEIVIGDFEELLIDEIEI--INY--KFHYEIA 293 Query: 320 VVDGFKCFVKIRSSQ----DPVPVFVQRNDD----GVYVDFEKSEVGVASGQACVFYTSD 371 + G + + R S + + +++ND+ +Y FEK + GQ VFY + Sbjct: 294 DLIGKELTARPRFSSKGLKGKLLLKIEKNDELQKQRLYFKFEKKTHENSEGQHIVFYLDN 353 Query: 372 SNEARVLGGGII 383 ++GGG I Sbjct: 354 ----ELIGGGEI 361 >gi|261208073|ref|ZP_05922748.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TC 6] gi|289565497|ref|ZP_06445945.1| tRNA methyl transferase [Enterococcus faecium D344SRF] gi|294615054|ref|ZP_06694941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium E1636] gi|294617680|ref|ZP_06697306.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium E1679] gi|314938375|ref|ZP_07845666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TX0133a04] gi|314942298|ref|ZP_07849146.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TX0133C] gi|314951434|ref|ZP_07854484.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TX0133A] gi|314993154|ref|ZP_07858539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TX0133B] gi|314996038|ref|ZP_07861116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TX0133a01] gi|260077657|gb|EEW65373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TC 6] gi|289162695|gb|EFD10547.1| tRNA methyl transferase [Enterococcus faecium D344SRF] gi|291592089|gb|EFF23711.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium E1636] gi|291596054|gb|EFF27321.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium E1679] gi|313589792|gb|EFR68637.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TX0133a01] gi|313592331|gb|EFR71176.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TX0133B] gi|313596391|gb|EFR75236.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TX0133A] gi|313598915|gb|EFR77760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TX0133C] gi|313642273|gb|EFS06853.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TX0133a04] Length = 373 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 143/379 (37%), Positives = 202/379 (53%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D +V Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAA 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R +D +DQ+YFL +Q+QL FPLG M+K VR Sbjct: 125 ATGHYAQ----VTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGMEKSEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS ICF+ + + + N A +GD+V L+G++ G+H G++ Sbjct: 181 AIAERAGLATAKKKDSTGICFIGEKNFKQFLS--NYLPAKKGDMVTLDGEVKGQHAGLMY 238 Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314 YTIGQR+GLG+ G EP FVV D ++ + VG +L + EI++ + Sbjct: 239 YTIGQRQGLGIGGGGDSQEPWFVVGKDLATNTLYVGQGFHHPALYATSLDASEIHFTTN- 297 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + + FKC K R Q VPV V+ DD V F++ + GQA VFY + Sbjct: 298 ---EPMPKEFKCTAKFRYRQQDVPVTVRLLDDNRAEVVFDEPVRAITPGQAVVFY----D 350 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I + + V Sbjct: 351 GMECLGGGLIDHAYQETKV 369 >gi|37526694|ref|NP_930038.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Photorhabdus luminescens subsp. laumondii TTO1] gi|81571961|sp|Q7MB22|MNMA_PHOLL RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|36786126|emb|CAE15178.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Photorhabdus luminescens subsp. laumondii TTO1] Length = 367 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 125/374 (33%), Positives = 197/374 (52%), Gaps = 32/374 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDDEEY---CSAATDLADAQSVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 65 KLGIELHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFAAEDLNADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R D + + R +D +DQSYFL+ + QQ+ FP+G+++K V Sbjct: 125 IATGHYVRRR-----DINGKSQLLRGLDNNKDQSYFLYTLSHQQIAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ D + R A G I+ ++G+ LG H G++ Sbjct: 180 RRIAEKIGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AKPGPIMTVDGESLGEHQGLM 237 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ EP +V+ D ++ +IV PR L + +++ W Sbjct: 238 YHTLGQRKGLGIGGTKEGSEEPWYVIDKDVQNNILIVAQGHEHPR--LMSTGLIAQQLYW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + + + C VK R Q +P V ++D + V F V GQ+ VFY Sbjct: 296 VD----RQTLTEKIHCVVKTRYRQQDIPCSVTPISEDKIEVHFANPVAAVTPGQSAVFYQ 351 Query: 370 SDSNEARVLGGGII 383 + LGGG+I Sbjct: 352 GEV----CLGGGVI 361 >gi|257866681|ref|ZP_05646334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus casseliflavus EC30] gi|257872802|ref|ZP_05652455.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus casseliflavus EC10] gi|257800639|gb|EEV29667.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus casseliflavus EC30] gi|257806966|gb|EEV35788.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus casseliflavus EC10] Length = 372 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 136/378 (35%), Positives = 204/378 (53%), Gaps = 25/378 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RVVV MSGGVDSSV A LLK GYDV+G+ ++ ++ + G C A +D D + Sbjct: 4 ENTRVVVGMSGGVDSSVTALLLKEQGYDVVGIFMKNWDD---TDENGVCTATEDYKDVAK 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGA Sbjct: 61 VAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY +++ V ++G M R +D +DQ+YFL +Q+QL FPLG M+K Sbjct: 121 DYVATGHY--AQVTVDENGVTH--MLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGMEKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A GL A K DS +CF+ + + + N A +G++V L+G++ G+H+G Sbjct: 177 EVRAIAERAGLATAQKKDSTGVCFIGEKNFKQFLS--NYLPAKKGNMVTLDGEVKGQHDG 234 Query: 259 IINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 ++ YTI G G G A EP FVV D ++ + VG +L R+ +I++ Sbjct: 235 LMYYTIGQRQGLGIGGGGATQEPWFVVGKDLATNTLYVGQGFHHPALYADRLEASQIHFT 294 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTS 370 + +D + F C K R Q VPV V+ D D V F++ + GQA VFY Sbjct: 295 TE---QDRGTE-FSCTAKFRYRQQDVPVTVRLLDGDRAEVIFDEPVRAITPGQAVVFY-- 348 Query: 371 DSNEARVLGGGIISGSKR 388 + LGGG+I + + Sbjct: 349 --DGMECLGGGLIDAAYK 364 >gi|257876279|ref|ZP_05655932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus casseliflavus EC20] gi|257810445|gb|EEV39265.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus casseliflavus EC20] Length = 372 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 136/378 (35%), Positives = 204/378 (53%), Gaps = 25/378 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RVVV MSGGVDSSV A LLK GYDV+G+ ++ ++ + G C A +D D + Sbjct: 4 ENTRVVVGMSGGVDSSVTALLLKEQGYDVVGIFMKNWDD---TDENGVCTATEDYKDVAK 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGA Sbjct: 61 VAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY +++ V ++G M R +D +DQ+YFL +Q+QL FPLG M+K Sbjct: 121 DYVATGHY--AQVTVDENGVTH--MLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGMEKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A GL A K DS +CF+ + + + N A +G++V L+G++ G+H+G Sbjct: 177 EVRAIAERAGLATAKKKDSTGVCFIGEKNFKQFLS--NYLPAKKGNMVTLDGEVKGQHDG 234 Query: 259 IINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 ++ YTI G G G A EP FVV D ++ + VG +L R+ +I++ Sbjct: 235 LMYYTIGQRQGLGIGGGGATQEPWFVVGKDLATNTLYVGQGFHHPALYADRLEASQIHFT 294 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTS 370 + +D + F C K R Q VPV V+ D D V F++ + GQA VFY Sbjct: 295 TE---QDRGTE-FSCTAKFRYRQQDVPVTVRLLDGDRAEVIFDEPVRAITPGQAVVFY-- 348 Query: 371 DSNEARVLGGGIISGSKR 388 + LGGG+I + + Sbjct: 349 --DGMECLGGGLIDAAYK 364 >gi|226951365|ref|ZP_03821829.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter sp. ATCC 27244] gi|226837887|gb|EEH70270.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter sp. ATCC 27244] Length = 377 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 124/374 (33%), Positives = 204/374 (54%), Gaps = 23/374 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ V D Sbjct: 4 RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTALEDLADAQAVAD 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F + YAAG TP P + CN+ +KF L LGAD + Sbjct: 61 KIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGADFI 120 Query: 142 ATGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY R + + G+ + R +D +DQ+YFL A +++ FP+G+++K V Sbjct: 121 ATGHYARRGASMQNSRGETYAPLLRGVDNNKDQTYFLHAVHGREISKTLFPVGEIEKPQV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+ L A K DS ICF+ + ++ D +K+ A G IV NG+ +G H+G++ Sbjct: 181 RKIAEELDLATAKKKDSTGICFIGERRFSDFLKQYLPAQA--GKIVLDNGKEVGEHHGLM 238 Query: 261 NYTIGQR-----RGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312 YT+GQR G+ A FV++ D ++R+++G ++ +++ I+W+ Sbjct: 239 YYTLGQRGGIGIGGMKGAQEGAWFVLHKDVANNRLVIGQGHEHPLMQSTQLWSESIDWVA 298 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR---NDDGVYVDFEKSEVGVASGQACVFYT 369 ++ GF+C K R Q + R N++G+ V+F++ + V GQ+ VFY+ Sbjct: 299 GE--QEIPTSGFRCTAKTRYRQPDQACTIYRDDHNENGIRVEFDEPQRAVTPGQSVVFYS 356 Query: 370 SDSNEARVLGGGII 383 + LGGG+I Sbjct: 357 GEV----CLGGGVI 366 >gi|170288218|ref|YP_001738456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermotoga sp. RQ2] gi|205828981|sp|B1L8X5|MNMA_THESQ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|170175721|gb|ACB08773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermotoga sp. RQ2] Length = 358 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 189/369 (51%), Gaps = 20/369 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR---KASKRKGSCCAGQDVYDAR 77 M+V VA+SGGVDS+V LL ++G++V ++ K +K CC+ D DA Sbjct: 1 MKVGVALSGGVDSAVALYLLLKEGHEVKAFHMKTKEDEFFLKKEIKKKVCCSPSDTADAI 60 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 R+ ++ V + D E FR VI PF G TP PCV CNR VKF + G Sbjct: 61 RIARSLGVEIEIVDVREVFREKVIEPFKRDLLRGLTPNPCVHCNRYVKFGYFMDYVLSQG 120 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D A+GHY R + G GK +++ + +D ++DQSYFL ++ L FP G K Sbjct: 121 FDAFASGHYARVE-FSGKYGK--KVIKKGVDGKKDQSYFLARIEPWRIEKLLFPNGIYTK 177 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRH 256 E +R +A E G+ +A K +SQD+CF+ G + +K + GI L EG ++ G+++G H Sbjct: 178 EEIRRIAEEAGIHVAKKQESQDVCFIPDGSIENFLK--DEGITLSEGKVITEKGEVVGHH 235 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G YT+GQR+GL + GE L+V S+ V+V E + + + W + Sbjct: 236 RGYPLYTVGQRKGLKIEKFGERLYVREKIPESNVVVVSGLEDVFFSGLIAEDPVWHVE-- 293 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 V + F+C ++R + P V+ D+ V V FEK V GQ FY D+ Sbjct: 294 ----VPEEFRCVCRVRKKSEEAPAVVRVRDNEVEVRFEKKVFAVTPGQIAAFYDEDT--- 346 Query: 376 RVLGGGIIS 384 +LGG II Sbjct: 347 -LLGGAIIK 354 >gi|307131188|ref|YP_003883204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dickeya dadantii 3937] gi|306528717|gb|ADM98647.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dickeya dadantii 3937] Length = 370 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 127/381 (33%), Positives = 208/381 (54%), Gaps = 33/381 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + ++ C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYRVEGLFMKNWEEDDDTE---YCSAATDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGIELHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + DGK R + R +D +DQSYFL+ + QQL FP+G+++K V Sbjct: 125 IATGHYVRRKDV---DGKSR--LLRGLDGNKDQSYFLYTLSHQQLAQSLFPVGELEKPQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259 R++A ++ L A K DS ICF+ + K+ D + R A G I+ + +G+++G H G+ Sbjct: 180 REIAEQLDLATARKKDSTGICFIGERKFRDFLARYLP--AQPGPILSVDDGKVMGEHQGL 237 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREIN 309 + +T+GQR+GLG+ +P +VV DK+ + ++ + E R+ ++++ Sbjct: 238 MYHTLGQRKGLGIGGVKEGGDDPWYVV--DKDVANNVLYVAQGHEHPRLMSVGLIAQQLH 295 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368 W+ + + +C VK R Q +P + D D + V F++ V GQ+ VFY Sbjct: 296 WVD----REPLTQPLRCAVKTRYRQADIPCLLTPLDADRIEVRFDEPVAAVTPGQSAVFY 351 Query: 369 TSDSNEARVLGGGIISGSKRS 389 ++ LGGGII R+ Sbjct: 352 QGEA----CLGGGIIEERLRA 368 >gi|295402096|ref|ZP_06812056.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus thermoglucosidasius C56-YS93] gi|294975878|gb|EFG51496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus thermoglucosidasius C56-YS93] Length = 370 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 201/387 (51%), Gaps = 25/387 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K RVVV MSGGVDSSV A LLK++GYDVIGV ++ ++ + G C A +D D +R Sbjct: 2 KKKRVVVGMSGGVDSSVAAYLLKQEGYDVIGVFMKNWDD---TNDDGVCTATEDYEDVKR 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + +Y ++E+ + + V F G TP P V CN +KF + L A Sbjct: 59 VANQLGIPYYSVNFEKEYWDRVFTYFMDELKRGRTPNPDVLCNTEIKFKAFVDYALSLDA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R G + + R DL +DQ+YFL T++ L + FPLG++ K+ Sbjct: 119 DYIATGHYARIRRENG-----QVTLLRGKDLNKDQTYFLSQLTEKHLAKVLFPLGELTKD 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A+E+ L A+K DS ICF+ + + +K N A G+I L+G++LG H+G Sbjct: 174 EVRKIAKELNLVTANKKDSTGICFIGERNFKRFLK--NFLPAQPGEIRSLDGEVLGTHDG 231 Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 ++ YTIGQR+ G GEP +VV D ++ ++V +L + I+++ Sbjct: 232 LMYYTIGQRKGLGIGGKGTGEPWYVVDKDLENNVLLVAQGKNHPALFSTGLIASNISFIN 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371 D F C K R Q+ V V +G V+FEK V GQ VFY +D Sbjct: 292 G----DVRPCTFACTAKFRYRQEDQKVTVHVRPNGTALVEFEKPVKAVTPGQVAVFYDND 347 Query: 372 SNEARVLGGGIISGSKRSDAVEESLLS 398 LG +I + DA ++ S Sbjct: 348 V----CLGSAVIDEVIKMDAANATIAS 370 >gi|241664140|ref|YP_002982500.1| tRNA-specific 2-thiouridylase MnmA [Ralstonia pickettii 12D] gi|240866167|gb|ACS63828.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia pickettii 12D] Length = 370 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 136/384 (35%), Positives = 195/384 (50%), Gaps = 28/384 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+VV MSGGVDSSV A LLK+ GYDV+G+ ++ + S+ C QD D V D Sbjct: 5 RIVVGMSGGVDSSVTAWLLKQQGYDVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I V ++ +++ V F Y+AG TP P V CN +KF L LGAD + Sbjct: 62 LIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGADTI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG+M K VR Sbjct: 122 ATGHYARVREVDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEMPKTKVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A E+GL A K DS ICF+ + + D + R G I +G+ +G H G+ Sbjct: 177 EIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPIKTPDGKTIGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313 YT+GQR+G+G+ G+ +V D N+ V+ G L H ++ +++W+ Sbjct: 235 YTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 A V+G K R Q P V R DG + + F +++ V GQ+ V Y + Sbjct: 295 ----QAPVEGTDLGAKTRYRQADAPCTVARAGDGALTLAFPEAQWAVTPGQSAVLYDGEV 350 Query: 373 NEARVLGGGIISGSKRSDAVEESL 396 LGGGIIS ++ + VE+++ Sbjct: 351 ----CLGGGIISAAEPA-VVEKAI 369 >gi|332035000|gb|EGI71520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudoalteromonas haloplanktis ANT/505] Length = 366 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 130/375 (34%), Positives = 202/375 (53%), Gaps = 32/375 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 ++V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VC Sbjct: 7 IKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNDEY---CAAADDLKDAQAVC 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L Q LGAD Sbjct: 64 DKLGIELHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAQALGAD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R L DD + +MCR +D +DQSYFL+ + + + FP+GD++K Sbjct: 124 FIATGHYVRRELR--DD---KYVMCRGLDNNKDQSYFLYTLSHEHIGQTLFPVGDIEKPE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E L DK DS ICF+ + K+ D +++ A G I +G +G H G+ Sbjct: 179 VRRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLP--AQPGVIEDTDGNNVGEHEGL 236 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREIN 309 + +T+GQR+GL + GEP +VV D + ++VG PR L + + +++ Sbjct: 237 MYHTLGQRKGLLIGGMKEGSGEPWYVVDKDLERNVLVVGQGKDHPR--LYSNGLNANQLH 294 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368 W+ D + +C VK R Q+ + + +DG+ V F++ + V GQ+ VFY Sbjct: 295 WV-DRVGPKGTT---RCTVKTRYRQEDLSCTLLVGEDGMARVLFDEPQKAVTPGQSAVFY 350 Query: 369 TSDSNEARVLGGGII 383 D LGGGII Sbjct: 351 AEDV----CLGGGII 361 >gi|241889855|ref|ZP_04777153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Gemella haemolysans ATCC 10379] gi|241863477|gb|EER67861.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Gemella haemolysans ATCC 10379] Length = 370 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 131/372 (35%), Positives = 191/372 (51%), Gaps = 25/372 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + +VVV MSGGVDSSV A LLK+ GYDVIGV ++ + + +G C A +D D +V Sbjct: 4 NKKVVVGMSGGVDSSVTAYLLKQQGYDVIGVFMKNWEEKDD---RGVCLAEKDYEDVIKV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C+ +++ +Y ++E+ + + V F Y G TP P + CN+ +KF L LGAD Sbjct: 61 CEQLDIPYYSINFEKEYWDKVFTYFLDEYKKGRTPNPDIMCNKEIKFKVFLEYAEDLGAD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + D R+M R +D +DQ+YFL Q Q+ ++ FP+G+++K+ Sbjct: 121 YVATGHYARVK-----DVDGERLMLRGVDNNKDQTYFLSQLKQHQIKNILFPVGELEKKD 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E GL A K DS ICF+ + + + + + A G +V L+G + G H G+ Sbjct: 176 VRKIAEEAGLATAKKKDSTGICFIGEKNFREFLSQYLP--AQGGKMVDLDGNVRGEHIGL 233 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREINWLG 312 ++YTIGQR GLG+ GE F L+ N V G L Sbjct: 234 MHYTIGQRHGLGIGGTKDTEGEAWFACGKDLENNVLYVCQGFHNEKLYSDSLLASSLSF- 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSD 371 ++ + F C K R Q V V+ D+ V V +++ V GQA VFY D Sbjct: 293 --TTKNPQPNKFTCTAKFRYRQPDTEVEVEVLEDNKVKVVYKEPVRAVTPGQAVVFYDGD 350 Query: 372 SNEARVLGGGII 383 LGG II Sbjct: 351 V----CLGGAII 358 >gi|296272287|ref|YP_003654918.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Arcobacter nitrofigilis DSM 7299] gi|296096462|gb|ADG92412.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Arcobacter nitrofigilis DSM 7299] Length = 346 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 124/366 (33%), Positives = 191/366 (52%), Gaps = 33/366 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGG+DSSV A +L+++GY+V GV L+L+N K ++ V Sbjct: 6 KVMVGMSGGIDSSVTAYMLQKEGYEVEGVYLKLHNRTDGYHEK-------NLEYIEDVAA 58 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + +++ D ++F V F SY G TP PCV CN+ +KF +L ++ GA L Sbjct: 59 FLGIKYHILDLADKFTAEVYDYFVDSYLEGTTPNPCVKCNKQIKFGAMLDFAKEHGASYL 118 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY ++ DG+ D +DQSYFL ++ L + FPL KKE + Sbjct: 119 ATGHYAKT------DGE---FFYEADDKTKDQSYFLSQVPKEALPFMMFPLSTYKKEDIV 169 Query: 202 DLAREMGLD---IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 E+ I +K++SQ+ICFV+ Y DVVKR +A I + G+++ G ++G H G Sbjct: 170 KFGAELDSAYKRITEKNESQEICFVET-VYTDVVKR-HANIDVPGNVLDEKGNVIGEHKG 227 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 +YTIG+RRG V EP FV L+ + ++VG +E+LEV+ + +N D Sbjct: 228 YAHYTIGKRRGFSVNGAHEPHFVTKLNPKDNTIVVGKKEALEVNNVIADNLNMFVDE--- 284 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 C VK+R P ++ D+ V + ++ GVA+GQ VFY + +V Sbjct: 285 ----KELTCTVKLRYRTTSTPCEIKIEDNKVNISLKEPVFGVATGQLAVFY----DNQKV 336 Query: 378 LGGGII 383 +G I Sbjct: 337 IGSAWI 342 >gi|134102624|ref|YP_001108285.1| tRNA-specific 2-thiouridylase MnmA [Saccharopolyspora erythraea NRRL 2338] gi|133915247|emb|CAM05360.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Saccharopolyspora erythraea NRRL 2338] Length = 348 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 129/361 (35%), Positives = 186/361 (51%), Gaps = 21/361 (5%) Query: 35 VVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTINVSHYVFDY 92 + AA G++V+GV L L +++ + R G+ CC +D +DARR D + + YV+D+ Sbjct: 1 MAAARAVEAGHEVVGVHLAL-SAKPGTLRTGARGCCTIEDSHDARRAADILGIPFYVWDF 59 Query: 93 EERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLY 152 ERF VI F YAAG TP PC+ CN +KF LL LG D + TGHY +RL Sbjct: 60 AERFTEEVIETFVGEYAAGRTPNPCLTCNEKIKFEALLEKAMALGFDAVCTGHY--ARLT 117 Query: 153 VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIA 212 V +DG ++ R D +DQSY L + T +QL FPLGD K VR A E GL +A Sbjct: 118 V-EDGV--PVLRRSRDEGKDQSYVLASLTAEQLGHSMFPLGDSLKSQVRQEAAERGLAVA 174 Query: 213 DKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHL-NGQILGRHNGIINYTIGQRRGL 270 K DS DICF+ G D K + + + + G +V G +LG H G+ +T+GQR+GL Sbjct: 175 KKPDSHDICFIPDG---DTKKFLESKLGQKPGQLVDAETGAVLGEHTGVHGFTVGQRKGL 231 Query: 271 GVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKC 326 G+ G P +V+ L+ S V VG + L V I + W + +C Sbjct: 232 GIDAPAPDGRPRYVLSLEPVSGTVKVGSADHLGVTEIDAKRPIWPSQRELDGPT----EC 287 Query: 327 FVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 V++R+ + D G+ + + GVA GQA V Y + VLG +I+ + Sbjct: 288 VVQVRAHGGTADAVAEVADGGMSIRLRRPLRGVAPGQAVVLYRPEEEGDLVLGSALIAAT 347 Query: 387 K 387 + Sbjct: 348 R 348 >gi|29829295|ref|NP_823929.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces avermitilis MA-4680] gi|81719846|sp|Q82JK2|MNMA_STRAW RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|29606402|dbj|BAC70464.1| putative tRNA (5-methylaminomethyl-2-thiouridine)-methyltransferase [Streptomyces avermitilis MA-4680] Length = 376 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 137/363 (37%), Positives = 191/363 (52%), Gaps = 24/363 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDV 73 + P+ +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G+ CC +D Sbjct: 6 QRPRRLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDS 64 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DARR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 65 RDARRAADVIGIPFYVWDLAERFREDVVEDFIAEYEAGRTPNPCLRCNEKIKFAALLDKA 124 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LG D + TGHY +++ V +DG R + R D+ +DQSY L +QL FPLG Sbjct: 125 LALGFDAVCTGHY--AQVIVREDGTRE--LHRASDMAKDQSYVLGVLDDRQLAHALFPLG 180 Query: 194 D--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNG 250 D K+ +R A GL +A K DS DICF+ G + R+ EGDIV +G Sbjct: 181 DTVTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLANRLGKA---EGDIVDESG 237 Query: 251 QILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 ++G H G +TIGQR+GL + G+P +V+ + + V VGP +L+V + Sbjct: 238 SVVGSHEGAYGFTIGQRKGLRIGTPAPDGKPRYVLDISPVDNTVTVGPAAALDVTALTAI 297 Query: 307 EINWLGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 + W G A G + ++R+ V + D + V F + GVA GQA Sbjct: 298 KPRWCG------AAPTGPGTYTAQLRAHGGETQVTAELVDGELQVTFAEPVRGVAPGQAV 351 Query: 366 VFY 368 V Y Sbjct: 352 VLY 354 >gi|50955069|ref|YP_062357.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] gi|71658015|sp|Q6AEE4|MNMA_LEIXX RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|50951551|gb|AAT89252.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Leifsonia xyli subsp. xyli str. CTCB07] Length = 366 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 139/368 (37%), Positives = 189/368 (51%), Gaps = 24/368 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G++V+GV L L + + GS CC +D DA+R Sbjct: 1 MRVLAAMSGGVDSAVAAARAVEAGHEVVGVHLAL-SRLPGTLHTGSRGCCTIEDSMDAQR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + I + +YV+D+ ERF V+ F + Y+AG TP PC+ CN +KF+ LL LG Sbjct: 60 AANVIGIPYYVWDFSERFALDVVDDFIAEYSAGRTPNPCMRCNEKIKFAALLEKALDLGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG-DMKK 197 D + TGHY + + DG R + R +DQSY L T QL FPLG K Sbjct: 120 DAVCTGHY--ASIVTDADGNRE--LHRASAWAKDQSYVLGVLTADQLAHSMFPLGVTPSK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRH 256 VR A GL +A K DS DICF+ G + +R+ A GDI+ +G +G H Sbjct: 176 AEVRAEAAARGLTVAAKPDSHDICFIPDGDTRGWLAERVGAET---GDILDRSGARIGTH 232 Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G YT+GQR+GL + G P FV+ + + V+VGP+E+L++ I W G Sbjct: 233 EGAHAYTVGQRKGLNIGFPSPDGRPRFVLEVRPKDNTVVVGPKEALDIAEIAGARYTWAG 292 Query: 313 DGLFEDAVVD-GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 A D F C V+IR+ DPVP + + + + GVA GQ V Y Sbjct: 293 T---PPASPDTPFACEVQIRAHADPVPAVARVAGGELVIRPDAPLNGVAPGQTAVVYAG- 348 Query: 372 SNEARVLG 379 RVLG Sbjct: 349 ---TRVLG 353 >gi|288919111|ref|ZP_06413450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Frankia sp. EUN1f] gi|288349455|gb|EFC83693.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Frankia sp. EUN1f] Length = 358 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 150/371 (40%), Positives = 194/371 (52%), Gaps = 32/371 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+V+ AMSGGVDS+V AA G+DV GV L L S AS R GS CC +D DARR Sbjct: 7 MKVLAAMSGGVDSAVAAARAVDAGHDVTGVHLALSRS-PASDRGGSRGCCTLEDARDARR 65 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D +RF VI F + YAAG TP PCV CN +KFS +L LG Sbjct: 66 AADVLGIPFYVWDLADRFEAEVIDQFVADYAAGRTPNPCVQCNERIKFSAVLDKALALGF 125 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGH+ R + DG R R +DL +DQSY L QL RFPLGD K Sbjct: 126 DAVVTGHHAR----LDPDGTLR----RSVDLAKDQSYVLGTLRPDQLAAARFPLGDSTKA 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIV-HLNGQILGRH 256 VR+ A GL +ADK DS DICFV G ++ R+ G IV G+ LG H Sbjct: 178 QVREEAARRGLGVADKPDSHDICFVAAGDTGAWLRDRLG---PRPGPIVDSETGETLGEH 234 Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G +T+GQRRGL + G P +V+ + +S V VGP +L++ + I W Sbjct: 235 DGAYAFTVGQRRGLRLGHPAPDGRPRYVLEVSPVTSTVTVGPARALDMRSLVAERIVWPH 294 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 +G C ++R+ VP V+ + + V + G A+GQA VFY D Sbjct: 295 EGP--------VSCVAQVRAHGGVVPAVVRARGEELDVQLVEPVRGTAAGQAVVFYDGD- 345 Query: 373 NEARVLGGGII 383 RVLGGG I Sbjct: 346 ---RVLGGGRI 353 >gi|270261459|ref|ZP_06189732.1| tRNA-specific 2-thiouridylase mnmA [Serratia odorifera 4Rx13] gi|270044943|gb|EFA18034.1| tRNA-specific 2-thiouridylase mnmA [Serratia odorifera 4Rx13] Length = 367 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 130/375 (34%), Positives = 204/375 (54%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVTAYLLQQQGYQVAGLFMKNWEEDDDEE---YCSAATDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADF 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 125 IATGHYVRRQDV---DGKSR--LLRGVDGNKDQSYFLYTLSHEQVAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ D + R A G IV+++GQ +G H G++ Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVNVDGQTVGEHQGLM 237 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ + +P +VV D ++ ++V PR L + ++++W Sbjct: 238 YHTLGQRKGLGIGGMKDSSEDPWYVVDKDVANNVLVVAQGHDHPR--LMSTGLIAQQLHW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + D L + +C VK R Q +P V DD + V F++ V GQ+ VFY Sbjct: 296 V-DRL---PLSGPLRCTVKTRYRQQDIPCTVTPLDDQRIEVRFDEPVAAVTPGQSAVFYQ 351 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 DEI----CLGGGIIE 362 >gi|269119363|ref|YP_003307540.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Sebaldella termitidis ATCC 33386] gi|268613241|gb|ACZ07609.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Sebaldella termitidis ATCC 33386] Length = 353 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 121/363 (33%), Positives = 187/363 (51%), Gaps = 17/363 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSS A LK+ GY+VIG+TL+ + +CC+ D+ DA+ VC Sbjct: 4 KVIVGMSGGVDSSAAALFLKKQGYEVIGITLKHLPDELSENGGKTCCSIDDITDAKNVCS 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + HY D E F+ V+ F Y G+TP PCV C+ +K L + ++GA+ + Sbjct: 64 HLEIPHYTIDVSEEFKKEVMDYFIKMYNEGKTPSPCVICDEKIKIKKLAEIADKMGAEYI 123 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY L + + I R + +DQ+Y L+ L + FPL K+ +R Sbjct: 124 ATGHYSGKTL------ENKLIWDR--ENTKDQTYMLYRLDTGILSRMLFPLSGYNKKEIR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++ +E G+ I K DSQ ICF +G Y D +K + EG NG +LG+H G Sbjct: 176 EIVKEAGIRIHSKPDSQGICFAPKG-YEDFLKGSKEIVIKEGLFKDKNGNVLGKHKGYQL 234 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 +T+GQRRGLG+ +G+ F+ + + +I+G E ++ + ++ IN+ + E+ Sbjct: 235 FTVGQRRGLGINLGKMYFITDIIPEENLIILG--EFQDLMKKSVKVINYKFNTELENTA- 291 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 G K + R S + + D VY F+ A GQ VFY D ++GGG Sbjct: 292 -GKKITARPRFSSKGLTGEIITKDKEVYFVFDNENAENAEGQHIVFYLDDV----LIGGG 346 Query: 382 IIS 384 I+ Sbjct: 347 EIA 349 >gi|282881825|ref|ZP_06290478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Peptoniphilus lacrimalis 315-B] gi|281298317|gb|EFA90760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Peptoniphilus lacrimalis 315-B] Length = 351 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 132/373 (35%), Positives = 189/373 (50%), Gaps = 30/373 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ +VV+ MSGGVDSSV A LLK GYDVIGV ++ + G C A +D D + Sbjct: 2 KNKKVVLGMSGGVDSSVAAILLKNQGYDVIGVFMRNWAD------DGVCTATEDYMDVVK 55 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + ++ ++EE +RN V F + Y G TP P V CN +KF L+ Sbjct: 56 VASQLGIKYFTVNFEEEYRNQVFSYFLNEYKKGRTPNPDVMCNTEIKFKAFLNYALNFDC 115 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +A GHY R++ DGK +CR +D +DQSYFL T+ L FP+G+++K+ Sbjct: 116 DYIAMGHYARTK---NIDGK--TYLCRGLDNNKDQSYFLSRVTEDALKKTLFPIGELQKD 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A++ GL A K DS ICF+ + + + + G IV + G +LG H+G Sbjct: 171 QVRKIAKDYGLSTALKKDSTGICFIGERDFNKFLDQF--LFTKPGKIVDIQGNVLGEHSG 228 Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGPRE---SLEVHRIYLREINWL- 311 +I+YTIGQRR G GEP FV D ++ +IV E +L + ++ W+ Sbjct: 229 LIHYTIGQRRGMGIGGKGNGEPFFVADKDLKNNLLIVAQGEKNPALYKKVFQVEDLFWIS 288 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 G F K VKIR ++ N+ +V + GV GQ VFY Sbjct: 289 GQPHFP------LKMTVKIRYRAKDEEALLEENEGKYFVKLKNPLKGVTPGQVAVFY--- 339 Query: 372 SNEARVLGGGIIS 384 N+ LG GII Sbjct: 340 -NDEICLGSGIIK 351 >gi|238754412|ref|ZP_04615768.1| tRNA-specific 2-thiouridylase mnmA [Yersinia ruckeri ATCC 29473] gi|238707445|gb|EEP99806.1| tRNA-specific 2-thiouridylase mnmA [Yersinia ruckeri ATCC 29473] Length = 371 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 128/375 (34%), Positives = 197/375 (52%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNW---EEDDNEEYCSAATDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R D + + R +D +DQSYFL+ QL FP+G+++K V Sbjct: 125 IATGHYVRRH-----DVNGKSQLLRGLDSNKDQSYFLYTLGHDQLAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + L A K DS ICF+ + K+ D + R A G I+ ++GQ LG H G++ Sbjct: 180 RRIAETLDLVTAKKKDSTGICFIGERKFRDFLARYLP--AQPGQILSVDGQYLGEHQGLM 237 Query: 261 NYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ +P +VV D ++ ++V PR L + ++++W Sbjct: 238 YHTLGQRKGLGIGGTKEGGDDPWYVVDKDVANNVLVVAQGHEHPR--LMSTGLIAQQLHW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + V+ F+C VK R Q +P V DD + V F++ V GQ+ VFY Sbjct: 296 VD----RQTVIAPFRCVVKTRYRQQDIPCTVTPLDDERIDVCFDQPVAAVTPGQSAVFYQ 351 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 GEV----CLGGGIIE 362 >gi|238855258|ref|ZP_04645577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus jensenii 269-3] gi|260664617|ref|ZP_05865469.1| tRNA methyl transferase [Lactobacillus jensenii SJ-7A-US] gi|282932449|ref|ZP_06337874.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus jensenii 208-1] gi|313471923|ref|ZP_07812415.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus jensenii 1153] gi|238832150|gb|EEQ24468.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus jensenii 269-3] gi|239529151|gb|EEQ68152.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus jensenii 1153] gi|260561682|gb|EEX27654.1| tRNA methyl transferase [Lactobacillus jensenii SJ-7A-US] gi|281303398|gb|EFA95575.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus jensenii 208-1] Length = 375 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 134/389 (34%), Positives = 196/389 (50%), Gaps = 29/389 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDV+GV ++ ++ + G C A +D D +RV Sbjct: 7 IRVVVGMSGGVDSSVSALLLKEAGYDVVGVFMKNWDD---TDDAGVCTATEDYEDVKRVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + V F S Y G TP P + CN +KF L L AD Sbjct: 64 DKIGIPYYSINFEKEYWQRVFEYFLSEYKKGRTPNPDIMCNTEIKFKSFLEFAMSLDADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY ++ D M RP D +DQ+YFL +Q+Q+ + FPL ++ K V Sbjct: 124 IAMGHYAKTV----KDANGVTHMMRPKDGNKDQTYFLSQLSQEQIKHVIFPLANLTKPQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A + GL A K DS ICF+ + + + A G +V +G ++G+H G++ Sbjct: 180 REIAEKAGLATAKKKDSTGICFIGERNFKKFLSEFLP--AKPGKMVTPDGNVVGQHGGLM 237 Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 YTIGQR+GLG+ + P FVV D + +IV + + R+Y + G + Sbjct: 238 YYTIGQRQGLGLGSTKESTAPWFVVGKDLKKNELIV--EQGYDSPRLYATSLKASGMSFY 295 Query: 317 ---EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD--FEKSEVGVASGQACVFYTSD 371 D V+ F C K R Q V V V+ + D F++ V GQA V Y + Sbjct: 296 TGNPDHDVE-FDCTAKFRYRQADVGVHVKYHAATKTCDVYFDEPARAVTPGQALVLYKGE 354 Query: 372 SNEARVLGGGIISGSKRSDAVEESLLSVI 400 LGGG I + + EE L ++ Sbjct: 355 ----ECLGGGNIDAAYQ----EEKQLQLV 375 >gi|269139398|ref|YP_003296099.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Edwardsiella tarda EIB202] gi|267985059|gb|ACY84888.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Edwardsiella tarda EIB202] gi|304559294|gb|ADM41958.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Edwardsiella tarda FL6-60] Length = 367 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 126/375 (33%), Positives = 201/375 (53%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDSDE---YCSAATDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 RLGIELHTVNFAAEYWDNVFELFLQEYRAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R D + R +D +DQSYFL+ + QQ+ FP+G+++K V Sbjct: 125 IATGHYVRRR-----DINGTTQLLRGVDANKDQSYFLYTLSHQQVAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ + + R A G IV ++G+ +G H G++ Sbjct: 180 RRIAAQLDLATAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIVTVDGETIGEHQGLM 237 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ EP +VV D +++ ++V PR L + + ++++W Sbjct: 238 YHTLGQRKGLGIGGTKEGSEEPWYVVDKDLDNNVLVVAQGHDHPR--LFSNGLIAQQLHW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + + +C VK R Q +P V +DD + V F++ V GQ+ VFY Sbjct: 296 VD----RRPLGAPLRCTVKTRYRQADIPCLVTPLSDDRIAVRFDQPVAAVTPGQSAVFYQ 351 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 DEV----CLGGGIIE 362 >gi|302344576|ref|YP_003809105.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Desulfarculus baarsii DSM 2075] gi|301641189|gb|ADK86511.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Desulfarculus baarsii DSM 2075] Length = 340 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 127/350 (36%), Positives = 182/350 (52%), Gaps = 24/350 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+ VA+SGGVDS+V A +L+R G++VIG+TL L A R+ + +A Sbjct: 3 RIAVALSGGVDSTVAALMLRRAGHEVIGLTLAL----GAGPRRA-------LTEAAEAAR 51 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + ++H V D F AVI P A +YAAG TP PC CN +K L + G L Sbjct: 52 ALGLTHQVIDVAAAFERAVIAPAARAYAAGRTPNPCAVCNAALKIPALWRAAQAFGCQAL 111 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R G R ++ R D + Q+YFL L L FPLG + K+ VR Sbjct: 112 ATGHYARLARLGG-----RPVLARAADAAKSQAYFLARLRPALLERLIFPLGGLTKDEVR 166 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +ARE GL A +++SQD CF+ G + +++ R G+ G I G+++G+H G+ Sbjct: 167 RVARESGLAAAQRAESQDGCFLPPGGWDELIGR--RGLTRPGPIEDAAGRVIGQHGGLHR 224 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 +T+GQRRGLG+A+G P +V+ LD + V VGP+E+L + W DA+ Sbjct: 225 FTVGQRRGLGLALGRPTYVLSLDGARAAVRVGPKEALVTGGFWGGAAMWNAT-PGADAIY 283 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 D ++R + V+R D VDF + VA GQ VF+ D Sbjct: 284 D-----CRVRYAAQGAACRVERQGDLWRVDFNSPQGAVAPGQLAVFFLDD 328 >gi|153835174|ref|ZP_01987841.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio harveyi HY01] gi|148868331|gb|EDL67456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio harveyi HY01] Length = 374 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 123/375 (32%), Positives = 203/375 (54%), Gaps = 28/375 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + + C A +D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R ++G++ + M R +D +DQSYFL+ + +Q+ FP+GD++K V Sbjct: 125 IAMGHYVRRSF--PENGEKPQ-MLRGLDSNKDQSYFLYTLSNEQIARSLFPVGDLEKPEV 181 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E L A K DS ICF+ + K+ + + R A G+I G+++G+H G++ Sbjct: 182 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQHQGLM 239 Query: 261 NYTIGQRRGLGVAMG-------EPLFVVY--LDKNSSRVIVGP-RESLEVHRIYLREINW 310 +T+GQR+GL + +P FV L++N + G L+ + +++W Sbjct: 240 YHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLASQLHW 299 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + + D KC VK R Q+ +P + +D+ + V F++ ++ V GQ+ VFY Sbjct: 300 VD----REPIRDVMKCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAVFYK 355 Query: 370 SDSNEARVLGGGIIS 384 D LGGGII Sbjct: 356 DDV----CLGGGIIE 366 >gi|297626267|ref|YP_003688030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922032|emb|CBL56594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 357 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 135/356 (37%), Positives = 190/356 (53%), Gaps = 27/356 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MRV VA+SGGVDS+V AA + G++ +GV L L R DAR V Sbjct: 1 MRVAVALSGGVDSAVTAARVVEAGHEAVGVHLLLGAGSVPETR-----------DARGVA 49 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + V+D +RF + V+ F SSYAAG TP PC+ CNR VKF LLS + G D Sbjct: 50 DAVGIPLVVWDLRDRFEHRVLDYFTSSYAAGRTPNPCLRCNREVKFRGLLSRGIEEGFDA 109 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KKES 199 +ATGHY +RL DG + R ++ +DQSY L +Q L FPLG + K+ Sbjct: 110 VATGHY--ARLQPARDGSIG--LHRAANVRKDQSYVLGVLSQDDLRHCLFPLGTVTTKDE 165 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR+ A GL +A K DS DICFV +G + + A +GDIV G +LG H+GI Sbjct: 166 VREEAERRGLPVAHKPDSTDICFVTEGGAAEFLAGRLAD--RQGDIVDARGTVLGTHHGI 223 Query: 260 INYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 ++T+GQR+GLG+ G+P +V LD ++ V VG L V ++ + +++ G L Sbjct: 224 QHFTVGQRKGLGLRRPADDGKPRYVTALDAATNTVHVGQGRELLVGQVDVEDLSDTGTAL 283 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 ++ V+ R+ VP ++ D + V F + GVA GQ VFY +D Sbjct: 284 GPH-----WRGLVQFRAHGRAVPARLEEADGQLRVHFAEPVSGVAPGQFIVFYDAD 334 >gi|294650884|ref|ZP_06728231.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter haemolyticus ATCC 19194] gi|292823302|gb|EFF82158.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter haemolyticus ATCC 19194] Length = 377 Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 124/374 (33%), Positives = 204/374 (54%), Gaps = 23/374 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ V D Sbjct: 4 RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTALEDLADAQAVAD 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F + YAAG TP P + CN+ +KF L LGAD + Sbjct: 61 KIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGADFI 120 Query: 142 ATGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY R + + G+ + R +D +DQ+YFL A +++ FP+G+++K V Sbjct: 121 ATGHYARRGASMQNSRGETYAPLLRGVDNNKDQTYFLHAVHGREINKTLFPVGEIEKPQV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+ L A K DS ICF+ + ++ D +K+ A G IV NG+ +G H+G++ Sbjct: 181 RKIAEELDLATAKKKDSTGICFIGERRFSDFLKQYLPAQA--GKIVLDNGKEVGEHHGLM 238 Query: 261 NYTIGQR-----RGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312 YT+GQR G+ A FV++ D ++R+++G ++ +++ I+W+ Sbjct: 239 YYTLGQRGGIGIGGMKGAQEGAWFVLHKDVANNRLVIGQGHEHPLMQSTQLWSESIDWVA 298 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR---NDDGVYVDFEKSEVGVASGQACVFYT 369 ++ GF+C K R Q + R N++G+ V+F++ + V GQ+ VFY+ Sbjct: 299 GE--QEIPTSGFRCTAKTRYRQPDQACTIYRDDHNENGIRVEFDEPQRAVTPGQSVVFYS 356 Query: 370 SDSNEARVLGGGII 383 + LGGG+I Sbjct: 357 GEV----CLGGGVI 366 >gi|331695625|ref|YP_004331864.1| tRNA-specific 2-thiouridylase mnmA [Pseudonocardia dioxanivorans CB1190] gi|326950314|gb|AEA24011.1| tRNA-specific 2-thiouridylase mnmA [Pseudonocardia dioxanivorans CB1190] Length = 359 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 150/377 (39%), Positives = 208/377 (55%), Gaps = 28/377 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV+GV L L + A R GS CC+ +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVDAGHDVVGVHLALSETPDA-LRSGSRGCCSREDADDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D +++ YV+D+ F V+ F ++YAAG TP PCV CN +KF+ LL LG Sbjct: 60 AADVLDIPFYVWDFAAPFSAGVVDDFVAAYAAGRTPNPCVRCNERIKFAALLDKALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGHY +RL G ++ R +D +DQSY L T QL FP+GD K Sbjct: 120 DAVCTGHY--ARLSNG-------VLRRAVDDGKDQSYVLAVLTPFQLAHALFPIGDTPKA 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIV-HLNGQILGR 255 VR A E GL +ADK DS DICF+ G + F + +R+ A G IV ++G+++G Sbjct: 171 QVRAEAAERGLRVADKPDSHDICFIPSGDTRAF-LAERLG---ARPGPIVDAVSGEVIGD 226 Query: 256 HNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 H G+ +T+GQR+G+GV A G P +V+ ++ S+ V VGP E+L+V I W Sbjct: 227 HAGVHGFTVGQRKGIGVDRPAADGRPRYVLGIEPVSATVTVGPAEALDVREIDTETPVW- 285 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTS 370 G G D V C V++R+ P DG++V+ + GVA GQ+ FY Sbjct: 286 GCGTAPDGPV---SCVVQVRAHGGLAPATAWPTARDGLHVELGEPLRGVAPGQSAAFYRP 342 Query: 371 DSNEARVLGGGIISGSK 387 D VLG +IS ++ Sbjct: 343 DPGGDVVLGSAVISAAR 359 >gi|261856534|ref|YP_003263817.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Halothiobacillus neapolitanus c2] gi|261837003|gb|ACX96770.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Halothiobacillus neapolitanus c2] Length = 377 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 127/380 (33%), Positives = 198/380 (52%), Gaps = 24/380 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K P+D RV+V +SGGVDSSV A L GY V G+ ++ + + C A D+ D Sbjct: 7 KRPQDTRVIVGLSGGVDSSVAALRLIEAGYQVEGLFMKNW---EGDDNDEYCAAKADMLD 63 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A V D + + + ++ + + + V F Y AG TP P + CNR +KF L R Sbjct: 64 ALSVADRLGIEFHFVNFAQDYWDRVFAHFLDEYRAGRTPNPDILCNREIKFRAFLDHART 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY R + + DD + + +D +DQSYFL A +++QL FP+G+M Sbjct: 124 LGADYIATGHYARVQHALPDDSG-ETCLLKGLDANKDQSYFLHALSREQLASALFPIGEM 182 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + G A K DS ICF+ + ++ + +K A GDIV ++GQ++G+ Sbjct: 183 EKPEVRRIAEQAGFKTATKKDSTGICFIGERRFSEFLKTYLP--AQPGDIVTVDGQVVGQ 240 Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +TIGQR+GLG+ +P +V + + +IV +L + + Sbjct: 241 HQGLMYHTIGQRQGLGIGGLRDQGDQPWYVAGKNLGDNTLIVAQGQDHPALFAPALRAGQ 300 Query: 308 INWLGDGLFEDAVVDGF--KCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQA 364 I+W+ D +V + + KIR Q P V + D + V F++ + + GQ+ Sbjct: 301 IHWIND---PTKLVGPYPLRLTAKIRYRQPDQPCTVMTISKDQLQVVFDQPQRAITPGQS 357 Query: 365 CVFYTSDSNEARVLGGGIIS 384 VFY D LGG +I Sbjct: 358 IVFYHGDV----CLGGAVIE 373 >gi|300716270|ref|YP_003741073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erwinia billingiae Eb661] gi|299062106|emb|CAX59222.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erwinia billingiae Eb661] Length = 367 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 127/374 (33%), Positives = 199/374 (53%), Gaps = 28/374 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAEDLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIYLHTVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADF 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + DGK R + R +D +DQSYFL+ +Q+ FP+G++ K V Sbjct: 124 IATGHYVRRQ---DVDGKSR--LLRGLDDNKDQSYFLYTLGHEQIAQSLFPVGELAKPDV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+ L A K DS ICF+ + K+ D + R A G I++ G+++G H G++ Sbjct: 179 RRIAEELELITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPILNAEGEVVGEHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ EP +VV D N+ V+ E + + L ++++W+ Sbjct: 237 YHTLGQRKGLGIGGTKAGSEEPWYVVDKDVANNILVVAQGHEHPRLMSVGLVAQQLHWVD 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 + + +C VK R Q +P V +D + V F++ V GQ+ VFY + Sbjct: 297 ----REILTAPLRCTVKTRYRQADIPCTVTPLGEDRIEVRFDEPVAAVTPGQSAVFYLDE 352 Query: 372 SNEARVLGGGIISG 385 LGGGII Sbjct: 353 I----CLGGGIIEA 362 >gi|258404437|ref|YP_003197179.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Desulfohalobium retbaense DSM 5692] gi|257796664|gb|ACV67601.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Desulfohalobium retbaense DSM 5692] Length = 349 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 126/371 (33%), Positives = 185/371 (49%), Gaps = 24/371 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRV 79 MR VA+SGG DS L+ G+DV+ + DV D R Sbjct: 1 MRTAVAVSGGADSLFALLALREAGHDVLALHAHFLAPDAVDA---------DVQDRLRHC 51 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C T+ V + D +F VI PF YA G TP PC CN +KF L +QLG Sbjct: 52 CKTLGVDLEIVDLHHKFAELVITPFIEHYAQGMTPNPCALCNPRIKFGILRDAAKQLGCK 111 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ATGHY+R L +G ++CR D ++QSYFL Q L ++ FPLG K + Sbjct: 112 GFATGHYVR--LLQTPNGP---LLCRGNDPRKEQSYFLSLVPQASLDNVVFPLGTRHKST 166 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 ++ + G I + +SQ++CF+ Y ++ A ++ G IV G LG H+G+ Sbjct: 167 IQGELEQRGFTIPESEESQEVCFIPDDDYRSFLQNTGAPLSGPGPIVDRAGNQLGHHSGL 226 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YT+GQRRGLG+A EPL+V+ + S+R++VG R + + E+N L L + Sbjct: 227 WRYTLGQRRGLGIAYSEPLYVIDKEIRSNRLVVGTRAERQATGCSVHELNTL---LPFEK 283 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 D + +V+ Q PVP ++ ++ G+ + F + + A GQ FYT+ + VL Sbjct: 284 WPD--QIWVQTNYRQQPVPCRIRIVSETGMEISFLEPKGPAAPGQVAAFYTA---KGYVL 338 Query: 379 GGGIISGSKRS 389 GGGII S R+ Sbjct: 339 GGGIIHDSTRT 349 >gi|71065801|ref|YP_264528.1| tRNA-specific 2-thiouridylase MnmA [Psychrobacter arcticus 273-4] gi|123648512|sp|Q4FSB4|MNMA_PSYA2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71038786|gb|AAZ19094.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Psychrobacter arcticus 273-4] Length = 408 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 137/394 (34%), Positives = 212/394 (53%), Gaps = 24/394 (6%) Query: 5 EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64 +A R +L NP V+V MSGGVDSSV A LL++ G+ V G+ ++ + ++ Sbjct: 17 DAHRPLTLTYIDNPSTKHVIVGMSGGVDSSVSAVLLQQAGFVVEGLFMKNWEEDDGTEY- 75 Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 C A D+ DA+ VCD I + + ++ + + V F + Y AG TP P + CN+ + Sbjct: 76 --CTAMDDLADAQAVCDKIGIKLHTANFAMEYWDRVFEHFLAEYKAGRTPNPDILCNKEI 133 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRL-YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183 KF L LGAD +ATGHY R + Y +DG + R +D +DQSYFL A Sbjct: 134 KFKAFLDYALTLGADYIATGHYTRRSVNYKNNDGIEVAQLLRGLDNNKDQSYFLHAVGGD 193 Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243 +L FP+G+++K VR +A E L A+K DS ICF+ + ++ D +++ A +G Sbjct: 194 KLAKTLFPVGELEKPVVRQIAEEHDLITANKKDSTGICFIGERRFKDFLQQYLP--AQKG 251 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PR 295 DIV +G +G H+G++ YT+GQR G+G+ EP FV+ D +++R+IVG Sbjct: 252 DIVTDDGINIGTHDGLMYYTLGQRGGIGIGGVKDRPEEPWFVLAKDLDNNRLIVGQGHEH 311 Query: 296 ESLEVHRIYLREINWLGDGLFEDAV--VDGFKCFVKIRSSQ-DPVPVFVQRNDDG--VYV 350 + + ++ +++W DGL + ++G +C K R Q D N DG V V Sbjct: 312 PMMLSNELHAYKLDWT-DGLPPTDIFSLEGLRCMAKSRYRQPDQACRVFAVNADGSEVRV 370 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ + V GQ+ VFY E LGGG+I+ Sbjct: 371 IFDEPQRAVTPGQSAVFYI----EEVCLGGGVIA 400 >gi|146293329|ref|YP_001183753.1| tRNA-specific 2-thiouridylase MnmA [Shewanella putrefaciens CN-32] gi|166235082|sp|A4Y7M1|MNMA_SHEPC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|145565019|gb|ABP75954.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella putrefaciens CN-32] Length = 372 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 127/374 (33%), Positives = 200/374 (53%), Gaps = 31/374 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 12 KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKDAQAVCD 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 69 KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDADY 128 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 129 IAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKHQV 184 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+EMGL DK DS ICF+ + K+ + ++ A G+I G+++G H G++ Sbjct: 185 REIAKEMGLITHDKKDSTGICFIGERKFTEFLRTYLP--AQPGNIETPEGEVIGTHQGLM 242 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ + +P +VV D + +IVG PR L + + +++W Sbjct: 243 YHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPR--LMSTGMTVNQLHW 300 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYT 369 + VDG VK R Q VP + D+ V F++ V GQ+ VFY Sbjct: 301 VD----RTGPVDGCHITVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQSAVFYD 356 Query: 370 SDSNEARVLGGGII 383 + LGGGII Sbjct: 357 GEV----CLGGGII 366 >gi|257897740|ref|ZP_05677393.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium Com15] gi|257835652|gb|EEV60726.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium Com15] Length = 373 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 143/379 (37%), Positives = 202/379 (53%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D +V Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAA 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R +D +DQ+YFL +Q+QL FPLG M+K VR Sbjct: 125 ATGHYAQ----VTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGMEKSEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS ICF+ + + + N A +G++V L+G+I G+H G++ Sbjct: 181 AIAERAGLATAKKKDSTGICFIGEKNFKQFLS--NYLPAKKGNMVTLDGEIKGQHAGLMY 238 Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314 YTIGQR+GLG+ G EP FVV D ++ + VG +L + EI++ + Sbjct: 239 YTIGQRQGLGIGGGGDSQEPWFVVGKDLATNTLYVGQGFHHPALYATSLDASEIHFTTN- 297 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + + FKC K R Q VPV V+ DD V F++ + GQA VFY + Sbjct: 298 ---EPMPKEFKCTAKFRYRQQDVPVTVRLLDDNRAEVVFDEPVRAITPGQAVVFY----D 350 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I + + V Sbjct: 351 GMECLGGGLIDHAYQETKV 369 >gi|163801953|ref|ZP_02195849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio sp. AND4] gi|159174094|gb|EDP58902.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio sp. AND4] Length = 374 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 124/375 (33%), Positives = 204/375 (54%), Gaps = 28/375 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + + C A +D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R ++GK+ + M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 125 IAMGHYVRRSF--PENGKKPQ-MLRGLDSNKDQSYFLYTLSNEQIARSLFPVGNLEKPEV 181 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E L A K DS ICF+ + K+ + + R A G+I G+++G+H G++ Sbjct: 182 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQHQGLM 239 Query: 261 NYTIGQRRGLGVAMG-------EPLFVVYLD-KNSSRVIVGPRES--LEVHRIYLREINW 310 +T+GQR+GL + +P FV D K + + V ++ L+ + +++W Sbjct: 240 YHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLKRNVLIAVQGKDHPLLKSEGLLASQLHW 299 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + + D KC VK R Q+ +P V +D+ + V F++ ++ V GQ+ VFY Sbjct: 300 VD----REPIRDVMKCTVKTRYRQEDIPCTIVPIDDENIKVIFDEPQIAVTPGQSAVFYE 355 Query: 370 SDSNEARVLGGGIIS 384 D LGGGII Sbjct: 356 GDV----CLGGGIIE 366 >gi|309781297|ref|ZP_07676033.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia sp. 5_7_47FAA] gi|308919710|gb|EFP65371.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia sp. 5_7_47FAA] Length = 370 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 136/384 (35%), Positives = 194/384 (50%), Gaps = 28/384 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+VV MSGGVDSSV A LLK+ GYDV+G+ ++ + S+ C QD D V D Sbjct: 5 RIVVGMSGGVDSSVTAWLLKQQGYDVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I V ++ +++ V F Y+AG TP P V CN +KF L LGAD + Sbjct: 62 LIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGADTI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + D +DQSYFL Q QL FPLG+M K VR Sbjct: 122 ATGHYARVREVDG-----RFELLTAFDHTKDQSYFLHRLNQAQLSRTLFPLGEMPKTKVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A E+GL A K DS ICF+ + + D + R G I +G+ +G H G+ Sbjct: 177 EIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPIKTPDGKTIGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313 YT+GQR+G+G+ G+ +V D N+ V+ G L H ++ +++W+ Sbjct: 235 YTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 A V+G K R Q P V R DG + + F +++ V GQ+ V Y + Sbjct: 295 ----QAPVEGTNLGAKTRYRQADAPCTVARAGDGALTLAFPEAQWAVTPGQSAVLYDGEV 350 Query: 373 NEARVLGGGIISGSKRSDAVEESL 396 LGGGIIS ++ + VE+++ Sbjct: 351 ----CLGGGIISAAEPA-VVEKAI 369 >gi|262376077|ref|ZP_06069308.1| tRNA methyl transferase [Acinetobacter lwoffii SH145] gi|262309171|gb|EEY90303.1| tRNA methyl transferase [Acinetobacter lwoffii SH145] Length = 379 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 129/375 (34%), Positives = 203/375 (54%), Gaps = 25/375 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 4 RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAVCD 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F + YAAG TP P + CN+ +KF L LGAD + Sbjct: 61 KIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAVNLGADFI 120 Query: 142 ATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY R G+ + R +D +DQ+YFL A +++ FP+G+++K V Sbjct: 121 ATGHYCRRGETMTNSRGEEYAPLLRGVDNNKDQTYFLHAVHGREINKTLFPVGEIEKPQV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+ L A K DS ICF+ + ++ D +K+ A G IV +G+ +G H+G++ Sbjct: 181 RKIAEELDLVTAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLEDGKEVGDHHGLM 238 Query: 261 NYTIGQRRGL------GVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWL 311 YT+GQR G+ GVA G FV++ D +R++VG ++ ++ I+W+ Sbjct: 239 YYTLGQRGGIGIGGMKGVAEG-AWFVLHKDIEGNRLVVGQGHEHPLMQSTTLWSEAIDWV 297 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD---GVYVDFEKSEVGVASGQACVFY 368 +D GF+C K R Q V ++ + GV V+F++ + V GQ+ VFY Sbjct: 298 AGE--QDIPETGFRCTAKTRYRQTDQACTVYQDSESPNGVRVEFDEPQRAVTPGQSVVFY 355 Query: 369 TSDSNEARVLGGGII 383 + + LGGG+I Sbjct: 356 SGEV----CLGGGVI 366 >gi|312194884|ref|YP_004014945.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Frankia sp. EuI1c] gi|311226220|gb|ADP79075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Frankia sp. EuI1c] Length = 359 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 149/373 (39%), Positives = 198/373 (53%), Gaps = 34/373 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G++V GV L L S A +R G+ CC +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVDAGHEVTGVHLALSRSPDA-ERTGARGCCTVEDARDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D +RF VI F ++YAAGETP PCV CN +KFS +L LG Sbjct: 60 AADVLGIPFYVWDLADRFETDVIADFVAAYAAGETPNPCVRCNERIKFSAVLGRALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGH+ R + DG ++ R +D +DQSY L +QL FPLGD K Sbjct: 120 DAVVTGHHAR----LSADG----VLRRSVDPAKDQSYVLGTLRPEQLRRAIFPLGDSTKA 171 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIV-HLNGQILGRH 256 VR A GL +ADK DS DICFV G ++ R+ A G IV G+ LG H Sbjct: 172 QVRAEAAARGLGVADKPDSHDICFVPSGDTGAWLRDRLG---AKPGPIVDAATGETLGAH 228 Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G +T+GQRRGL + G P +V+ + +S V VGP ESL+V R+ W Sbjct: 229 DGTFAFTVGQRRGLRLGRPAPDGRPRYVLDISPVTSTVTVGPAESLDVWRLVADAGVW-- 286 Query: 313 DGLFEDAVVDG--FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 A +G +C ++R+ D VP + + + ++ G A+GQA V Y Sbjct: 287 ------AAPEGVDVECLAQVRAHGDAVPAVARADGGELSIELRAPVRGTAAGQAVVLYDG 340 Query: 371 DSNEARVLGGGII 383 D RVLGGG I Sbjct: 341 D----RVLGGGHI 349 >gi|87122222|ref|ZP_01078105.1| tRNA methyltransferase [Marinomonas sp. MED121] gi|86162542|gb|EAQ63824.1| tRNA methyltransferase [Marinomonas sp. MED121] Length = 377 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 130/391 (33%), Positives = 205/391 (52%), Gaps = 26/391 (6%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ T N++ KN K V+V MSGGVDSSV A LL + GY V G+ ++ ++ Sbjct: 1 MITETNTPENTIHSIKNTK---VIVGMSGGVDSSVSALLLIQQGYQVEGLFMKNWDEDDG 57 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 ++ C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + C Sbjct: 58 TEY---CTAKDDLADAQSVCDKLGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILC 114 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N+ +KF L LGAD +ATGHY+R DD + + + + +D +DQSYFL+A Sbjct: 115 NKEIKFKAFLEYANALGADYIATGHYVRR---THDDNQAK--LLKGLDNNKDQSYFLYAV 169 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 + ++ FP+G+++K VR LA+E L +K DS ICF+ + ++ D +++ A Sbjct: 170 GKDEIAKSLFPVGELEKPEVRRLAQEHDLITHNKKDSTGICFIGERRFKDFLEQYLP--A 227 Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLD-KNSSRVIVGP 294 GDI L G +GRH+G++ +TIGQR+GLG+ EP +VV D N+ ++ Sbjct: 228 QPGDIKTLEGDTIGRHSGLMYHTIGQRQGLGIGGLANYSDEPWYVVEKDLDNNVLLVTQS 287 Query: 295 RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFE 353 + +++ +L N D + A C K R Q + N DG + V F Sbjct: 288 SDDKPLYKTHLNASNM--DWVARVAPELPLTCKAKCRYRQADQDCTISANPDGSIEVSFV 345 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 +++ + GQ+ VFY + LGGGII+ Sbjct: 346 EAQRAITPGQSVVFYLDE----ECLGGGIIN 372 >gi|156974113|ref|YP_001445020.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio harveyi ATCC BAA-1116] gi|166235090|sp|A7MSW1|MNMA_VIBHB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|156525707|gb|ABU70793.1| hypothetical protein VIBHAR_01824 [Vibrio harveyi ATCC BAA-1116] Length = 374 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 124/375 (33%), Positives = 203/375 (54%), Gaps = 28/375 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + + C A +D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 +++ + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 65 KLDIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R R + +D K + M R +D +DQSYFL+ + +Q+ FP+GD++K V Sbjct: 125 IAMGHYVR-RSFPENDEKPQ--MLRGLDSNKDQSYFLYTLSNEQIARSLFPVGDLEKPEV 181 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E L A K DS ICF+ + K+ + + R A G+I G+++G+H G++ Sbjct: 182 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQHQGLM 239 Query: 261 NYTIGQRRGLGVAMG-------EPLFVVY--LDKNSSRVIVGP-RESLEVHRIYLREINW 310 +T+GQR+GL + +P FV L++N + G L+ + +++W Sbjct: 240 YHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLASQLHW 299 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + + D KC VK R Q+ +P + +D+ + V F++ ++ V GQ+ VFY Sbjct: 300 VD----REPIRDVMKCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAVFYK 355 Query: 370 SDSNEARVLGGGIIS 384 D LGG II Sbjct: 356 DDV----CLGGSIIE 366 >gi|269967776|ref|ZP_06181823.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio alginolyticus 40B] gi|269827596|gb|EEZ81883.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio alginolyticus 40B] Length = 430 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 123/375 (32%), Positives = 203/375 (54%), Gaps = 28/375 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + + C A +D+ DA+ VCD Sbjct: 64 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 120 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 121 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 180 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R ++G++ + M R +D +DQSYFL+ + +Q+ FP+GD++K V Sbjct: 181 IAMGHYVRRSF--PENGEKPQ-MLRGLDGNKDQSYFLYTLSNEQIARSLFPVGDLEKPEV 237 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E L A K DS ICF+ + K+ + + R A G+I G+++G+H G++ Sbjct: 238 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQHQGLM 295 Query: 261 NYTIGQRRGLGVAMG-------EPLFVVY--LDKNSSRVIVGP-RESLEVHRIYLREINW 310 +T+GQR+GL + +P FV L++N + G L+ + +++W Sbjct: 296 YHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLASQLHW 355 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + + D KC VK R Q+ +P + +D+ + V F++ ++ V GQ+ VFY Sbjct: 356 VD----REPIRDVMKCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAVFYK 411 Query: 370 SDSNEARVLGGGIIS 384 D LGGGII Sbjct: 412 GDV----CLGGGIIE 422 >gi|255327012|ref|ZP_05368088.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rothia mucilaginosa ATCC 25296] gi|255296229|gb|EET75570.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rothia mucilaginosa ATCC 25296] Length = 407 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 144/396 (36%), Positives = 197/396 (49%), Gaps = 44/396 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+++ AMSGGVDS+V AA G++V+GV L L + + R GS CC +D DARR Sbjct: 1 MKILAAMSGGVDSAVAAARAVEAGHEVVGVHLAL-SRMPGTLRTGSRGCCTLEDSMDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC + + +V+D+ ERF+ V+ F S Y AG TP PC+ CN +KF+ LL LG Sbjct: 60 VCSQLGIPFFVWDFSERFKEDVVDDFISEYEAGRTPNPCMRCNEKIKFAALLERALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197 D + TGHY +R+ +DG R + R D +DQSY L T +QL FPL D K Sbjct: 120 DAVVTGHY--ARVITTEDGNRE--LHRAADWAKDQSYVLGVLTHEQLKHAWFPLADTPSK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRH 256 VR A E G +A K DS DICF+ +G D + I + G I +G++LG H Sbjct: 176 AQVRAEAAERGFSVAKKPDSYDICFIPEG---DTRAWLGDHITMRPGLIKDTHGEVLGEH 232 Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G YT+GQR+GL + A G+P FV+ + + VIVG RE L VH I W G Sbjct: 233 PGAQAYTVGQRKGLALGRPAADGKPRFVLEVRPKENEVIVGSRELLAVHEIRGIRATWAG 292 Query: 313 DGLFEDAVV-----------DGFKCFVKIRSSQDPVPVFV--------QRNDDGVY---- 349 + + A + F+ ++R+ DPV + ++G Sbjct: 293 IPVEQAARFLEEPAQLGARSEEFEVTAQVRAHADPVRAKAYMTWAPDPEAEEEGALRLET 352 Query: 350 -VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 V GVA GQ V Y RVLG I+ Sbjct: 353 VVRLLDPLSGVAPGQTMVLYQG----TRVLGQSTIA 384 >gi|91226036|ref|ZP_01260963.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio alginolyticus 12G01] gi|91189477|gb|EAS75754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio alginolyticus 12G01] Length = 374 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 123/375 (32%), Positives = 203/375 (54%), Gaps = 28/375 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + + C A +D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R ++G++ + M R +D +DQSYFL+ + +Q+ FP+GD++K V Sbjct: 125 IAMGHYVRRSF--PENGEKPQ-MLRGLDGNKDQSYFLYTLSNEQIARSLFPVGDLEKPEV 181 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E L A K DS ICF+ + K+ + + R A G+I G+++G+H G++ Sbjct: 182 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQHQGLM 239 Query: 261 NYTIGQRRGLGVAMG-------EPLFVVY--LDKNSSRVIVGP-RESLEVHRIYLREINW 310 +T+GQR+GL + +P FV L++N + G L+ + +++W Sbjct: 240 YHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLASQLHW 299 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + + D KC VK R Q+ +P + +D+ + V F++ ++ V GQ+ VFY Sbjct: 300 VD----REPIRDVMKCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAVFYK 355 Query: 370 SDSNEARVLGGGIIS 384 D LGGGII Sbjct: 356 GDV----CLGGGIIE 366 >gi|90021322|ref|YP_527149.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Saccharophagus degradans 2-40] gi|123090544|sp|Q21K42|MNMA_SACD2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|89950922|gb|ABD80937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Saccharophagus degradans 2-40] Length = 380 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 128/383 (33%), Positives = 197/383 (51%), Gaps = 24/383 (6%) Query: 15 DKNP-KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 D P ++ V+V MSGGVDSSV A LLK+ GY V G+ ++ ++ ++ C A D+ Sbjct: 12 DPRPANEITVIVGMSGGVDSSVSALLLKQQGYKVEGLFMKNWDEDDGTE---YCTAMTDL 68 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA VC +++ + ++ ++ + V F Y A TP P + CNR +KF L Sbjct: 69 MDAAAVCQKLDIHLHTANFARQYWDNVFEYFLEEYKACRTPNPDILCNREIKFKVFLEYA 128 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 ++LGAD +ATGHY R+ + G R+ +D +DQSYFL A +Q+ FP+G Sbjct: 129 KKLGADYIATGHYTRTSQHEGCTQLRKG-----LDPNKDQSYFLHAVGEQEFAQTLFPIG 183 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 D++K VR +A E GL +K DS ICF+ + ++ D ++ A G IV NG + Sbjct: 184 DIEKPQVRAIAEERGLVTHNKKDSTGICFIGERRFKDFLETYLP--AQPGVIVDENGVEI 241 Query: 254 GRHNGIINYTIGQRRGLGVA--MGEPLFVVY-----LDKNSSRVIVGPRESLEV-HRIYL 305 G+H G++ +TIGQR+GLG+ G P Y L N V+ G L + + Sbjct: 242 GKHQGLMYHTIGQRQGLGIGGVPGRPEAPWYVAEKRLQTNQLVVVQGSNHPLLFSNELTT 301 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 ++W+ L + + F+C K R Q + N DGV F++ + V GQ+ Sbjct: 302 GAMHWINPRL-APTLSEPFRCTAKTRYRQPEQWCTLTANGDGVIAVFDEPQRAVTPGQSA 360 Query: 366 VFYTSDSNEARVLGGGIISGSKR 388 VFY D LGG +I +++ Sbjct: 361 VFYQGDI----CLGGAVIETTRK 379 >gi|258621706|ref|ZP_05716737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio mimicus VM573] gi|258626348|ref|ZP_05721195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio mimicus VM603] gi|262171838|ref|ZP_06039516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio mimicus MB-451] gi|258581400|gb|EEW06302.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio mimicus VM603] gi|258585937|gb|EEW10655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio mimicus VM573] gi|261892914|gb|EEY38900.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio mimicus MB-451] Length = 371 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 123/375 (32%), Positives = 199/375 (53%), Gaps = 30/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 12 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCD 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 69 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R +G++ + M R +D +DQSYFL+ + +Q+ FP+GD++K V Sbjct: 129 IAMGHYVRRTF--PQNGEKPQ-MLRGLDNNKDQSYFLYTLSHEQVARSLFPVGDLEKPEV 185 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A K DS ICF+ + K+ D + R A G I G+++G H G++ Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 243 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLREINW 310 +T+GQR+GL + + +P +V DK+ R ++ L+ H + +++W Sbjct: 244 YHTLGQRKGLHIGGMKESNEQPWYVA--DKDLKRNVLIAVQGADHPLLKSHGLVAAQLHW 301 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + + +C VK R Q + + +DD + V F++ +V V GQ+ VFY Sbjct: 302 VD----RTPITEPLRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAVFYQ 357 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 358 GEI----CLGGGIIE 368 >gi|281411738|ref|YP_003345817.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermotoga naphthophila RKU-10] gi|281372841|gb|ADA66403.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermotoga naphthophila RKU-10] Length = 358 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 128/370 (34%), Positives = 189/370 (51%), Gaps = 22/370 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL----YNSRKASKRKGSCCAGQDVYDA 76 M+V VA+SGGVDS+V LL ++G++V ++ + RK K+K CC+ D DA Sbjct: 1 MKVGVALSGGVDSAVALYLLLKEGHEVKAFHMKTKEDEFFIRKEIKKK-VCCSPSDTADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R+ + V + D +E FR VI PF G TP PC CNR VKF L+ Sbjct: 60 MRIAHFLGVEIEIVDVKEIFREKVIEPFKRDLLKGLTPNPCAHCNRFVKFGYLMDYVLNQ 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 G D A+GHY R + R+++ + +DL++DQSYFL ++ L FP G Sbjct: 120 GFDAFASGHYARIEF---SEKYGRKVIKKGVDLKKDQSYFLARIEPWRIERLIFPNGIYT 176 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGR 255 KE +R +A E G+ +A K +SQD+CF+ G + +K + GI L +GDI+ G+++GR Sbjct: 177 KEEIRKIAEEAGIHVAKKQESQDVCFIPDGSIENFLK--DEGITLKDGDIITPEGEVVGR 234 Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H G YTIGQR+G + G +V + V+V E + + + W + Sbjct: 235 HFGYPLYTIGQRKGFKIEKFGRRYYVRGKIPEKNVVVVSDLEDVFFSGLIAEDPVWHVE- 293 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 V + F+C ++R + P V+ D+ V V FEK V GQ FY D+ Sbjct: 294 -----VPEEFRCVCRVRKKSEEAPAVVKVKDNEVEVRFEKKVFAVTPGQIAAFYDGDT-- 346 Query: 375 ARVLGGGIIS 384 +LGG II Sbjct: 347 --LLGGAIIK 354 >gi|239944472|ref|ZP_04696409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces roseosporus NRRL 15998] gi|239990930|ref|ZP_04711594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces roseosporus NRRL 11379] gi|291447937|ref|ZP_06587327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces roseosporus NRRL 15998] gi|291350884|gb|EFE77788.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces roseosporus NRRL 15998] Length = 378 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 142/384 (36%), Positives = 200/384 (52%), Gaps = 26/384 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDA 76 + +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G+ CC +D DA Sbjct: 7 RPLRVLAAMSGGVDSAVAAARAVEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDA 65 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL L Sbjct: 66 RRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALAL 125 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194 G D + TGHY + + + +DG R + R D+ +DQSY L ++QL FPLGD Sbjct: 126 GFDAVCTGHY--ATVVLTEDGSRE--LHRASDMAKDQSYVLGVLDEKQLAHAMFPLGDTL 181 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 K+ +R A GL +A K DS DICF+ G + G A EGDI+ +G LG Sbjct: 182 TTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLADRLGGPA-EGDILDESGTKLG 240 Query: 255 RHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 H G +TIGQR+GL + G+P +V+ + ++ V VGP E+L+V + + W Sbjct: 241 THEGAFGFTIGQRKGLKIGHPAPDGKPRYVLDISPVNNTVTVGPVEALDVTSLTAIKPRW 300 Query: 311 LGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 G G + ++R+ V + D + V F + GVA GQA V Y Sbjct: 301 CG------TPPSGPGTYTAQLRAHGGETEVTAELVDGSELNVTFTEPVRGVAPGQAVVLY 354 Query: 369 TSDSNEARVLGGGIISGSKRSDAV 392 + RV+G I+ + R + V Sbjct: 355 ----DGTRVVGSATIATTVRRERV 374 >gi|148652768|ref|YP_001279861.1| tRNA-specific 2-thiouridylase MnmA [Psychrobacter sp. PRwf-1] gi|205816892|sp|A5WE20|MNMA_PSYWF RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|148571852|gb|ABQ93911.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Psychrobacter sp. PRwf-1] Length = 398 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 133/381 (34%), Positives = 206/381 (54%), Gaps = 24/381 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 NP RVVV MSGGVDSSV A LL++ G+ V G+ ++ + ++ C A +D+ DA Sbjct: 24 NPAQTRVVVGMSGGVDSSVSAVLLQQAGFQVEGLFMKNWEEDDGTEY---CTAMEDLADA 80 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + VCD I ++ + ++ + + V F + Y AG TP P + CN+ +KF L L Sbjct: 81 QAVCDKIGINLHTANFAMEYWDRVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYAVTL 140 Query: 137 GADVLATGHYIRSRL-YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 GAD +ATGHY R + Y +DG + R +D +DQSYFL A ++ FP+G++ Sbjct: 141 GADYIATGHYTRRSVNYTREDGLEVAHLMRGLDNNKDQSYFLHAVGGDKIAKTLFPVGEL 200 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E L A K DS ICF+ + ++ D +++ A G+IV +G +G+ Sbjct: 201 EKPEVRRIAEEHDLITAKKKDSTGICFIGERRFKDFLQQYLP--AKPGNIVTDDGITIGK 258 Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H+G++ YT+GQR G+G+ EP FV+ D +++ +IVG L R+ + Sbjct: 259 HDGLMYYTLGQRGGIGIGGVKDRPEEPWFVLQKDLSNNELIVGQGHDHPMLLSQRLTAYK 318 Query: 308 INWLGDGLFEDAVV--DGFKCFVKIRSSQ-DPVPVFVQRNDDG--VYVDFEKSEVGVASG 362 ++W+ + + A+ G KC K R Q D +DDG V V F++ + V G Sbjct: 319 LDWV-ERIAPAAIFSEQGLKCMAKTRYRQPDQSCTVFADSDDGSRVKVIFDEPQRAVTPG 377 Query: 363 QACVFYTSDSNEARVLGGGII 383 Q+ VFY + LGGG+I Sbjct: 378 QSAVFYIGEV----CLGGGVI 394 >gi|189501011|ref|YP_001960481.1| tRNA-specific 2-thiouridylase MnmA [Chlorobium phaeobacteroides BS1] gi|229486338|sp|B3EN11|MNMA_CHLPB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|189496452|gb|ACE05000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobium phaeobacteroides BS1] Length = 359 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 130/368 (35%), Positives = 202/368 (54%), Gaps = 29/368 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ-LYNSRKASKRKGSCCAGQDVYDARRVCD 81 V+V +SGGVDS+V A +L +GY V G+ ++ L +S + + S D + R Sbjct: 8 VIVGISGGVDSAVAACILIENGYRVTGLHIKVLDHSDDSLHLEKSPLIISDRKEFRFPVF 67 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 ++N+S FR VI F Y +G TP PC+ CN+ +K+ LL L A ++ Sbjct: 68 SLNLSG-------SFRRDVIDYFLQDYLSGRTPNPCMVCNKLIKWKGLLKGADLLQATLV 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R D G+ + + + D ++DQSYFL+ + ++L P+G++ K+ VR Sbjct: 121 ATGHYARI-----DCGREKCRLLKGTDSQKDQSYFLWMLSSEELSKTLLPVGNLTKQEVR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRHNG 258 +LAR G+ A+K +SQ+ICFV Y +VVK G+A + G+I+ G+++G H G Sbjct: 176 ELARRFGVRAAEKKESQEICFVPDNDYREVVKSSRPGLAEKLTGGEIIDTEGKVIGHHAG 235 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 YTIGQR+GLG++ EPL+V LD +R+ VG + L+ ++ ++NW G E Sbjct: 236 YPFYTIGQRKGLGISSPEPLYVNRLDPEKNRIRVGGKAMLQCRKLIAGQMNWTGISPPET 295 Query: 319 AVVDGFKCFVKIRSSQDP---VPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + + ++ R + + VPV +R + V F+K + V GQA VFY D Sbjct: 296 STRAAAR--IRYRDTGEACTIVPVEKERFE----VIFDKPKQSVTPGQAVVFYRDDE--- 346 Query: 376 RVLGGGII 383 V+GGGII Sbjct: 347 -VIGGGII 353 >gi|253688256|ref|YP_003017446.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259495833|sp|C6DFW7|MNMA_PECCP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|251754834|gb|ACT12910.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 368 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 131/376 (34%), Positives = 201/376 (53%), Gaps = 33/376 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + ++ C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYHVEGLFMKNWEEDDDTEY---CSAATDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R DGK R + R MD +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 125 IATGHYVRRHDV---DGKSR--LLRGMDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259 R +A E+ L A K DS ICF+ + K+ D + R A G I+ + + + +G+H G+ Sbjct: 180 RKIAEELELATAKKKDSTGICFIGERKFTDFLARYLP--AQPGPILSVDDNKPMGQHQGL 237 Query: 260 INYTIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREIN 309 + +T+GQR+GLG+ GE P +VV D ++ + V PR L H + ++++ Sbjct: 238 MYHTLGQRKGLGIGGVKDGGEDPWYVVDKDVANNILYVAQGHEHPR--LMSHGLIAQQLH 295 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368 W+ + +C VK R Q +P V DD + V F++ V GQ+ VFY Sbjct: 296 WVD----RQPLTAELRCTVKTRYRQADIPCTVTPLGDDRITVRFDEPVAAVTPGQSAVFY 351 Query: 369 TSDSNEARVLGGGIIS 384 D LGGGII Sbjct: 352 LDDV----CLGGGIIE 363 >gi|69244797|ref|ZP_00603021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium DO] gi|257879151|ref|ZP_05658804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium 1,230,933] gi|257882042|ref|ZP_05661695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium 1,231,502] gi|257883775|ref|ZP_05663428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium 1,231,501] gi|257889981|ref|ZP_05669634.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium 1,231,410] gi|258615538|ref|ZP_05713308.1| tRNA-specific 2-thiouridylase MnmA [Enterococcus faecium DO] gi|260560202|ref|ZP_05832379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium C68] gi|293553765|ref|ZP_06674382.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium E1039] gi|293563497|ref|ZP_06677945.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium E1162] gi|293569057|ref|ZP_06680369.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium E1071] gi|293571269|ref|ZP_06682303.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium E980] gi|294622809|ref|ZP_06701763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium U0317] gi|314947767|ref|ZP_07851174.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TX0082] gi|68196151|gb|EAN10581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium DO] gi|257813379|gb|EEV42137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium 1,230,933] gi|257817700|gb|EEV45028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium 1,231,502] gi|257819613|gb|EEV46761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium 1,231,501] gi|257826341|gb|EEV52967.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium 1,231,410] gi|260073769|gb|EEW62094.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium C68] gi|291588238|gb|EFF20074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium E1071] gi|291597767|gb|EFF28905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium U0317] gi|291602058|gb|EFF32293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium E1039] gi|291604499|gb|EFF33985.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium E1162] gi|291608676|gb|EFF37964.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium E980] gi|313645747|gb|EFS10327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TX0082] Length = 373 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 142/379 (37%), Positives = 202/379 (53%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D +V Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAA 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R +D +DQ+YFL +Q+QL FPLG M+K VR Sbjct: 125 ATGHYAQ----VTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGMEKSEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS ICF+ + + + N A +G++V L+G++ G+H G++ Sbjct: 181 AIAERAGLATAKKKDSTGICFIGEKNFKQFLS--NYLPAKKGNMVTLDGEVKGQHAGLMY 238 Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314 YTIGQR+GLG+ G EP FVV D ++ + VG +L + EI++ + Sbjct: 239 YTIGQRQGLGIGGGGDSQEPWFVVGKDLATNTLYVGQGFHHPALYATSLDASEIHFTTN- 297 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + + FKC K R Q VPV V+ DD V F++ + GQA VFY + Sbjct: 298 ---EPMPKEFKCTAKFRYRQQDVPVTVRLLDDNRAEVVFDEPVRAITPGQAVVFY----D 350 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I + + V Sbjct: 351 GMECLGGGLIDHAYQETKV 369 >gi|283457726|ref|YP_003362313.1| putative tRNA methyltransferase [Rothia mucilaginosa DY-18] gi|283133728|dbj|BAI64493.1| predicted tRNA methyltransferase [Rothia mucilaginosa DY-18] Length = 407 Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 144/396 (36%), Positives = 197/396 (49%), Gaps = 44/396 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+++ AMSGGVDS+V AA G++V+GV L L + + R GS CC +D DARR Sbjct: 1 MKILAAMSGGVDSAVAAARAVEAGHEVVGVHLAL-SRMPGTLRTGSRGCCTLEDSMDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC + + +V+D+ ERF+ V+ F S Y AG TP PC+ CN +KF+ LL LG Sbjct: 60 VCSQLGIPFFVWDFSERFKEDVVDDFISEYEAGRTPNPCMRCNEKIKFAALLERALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197 D + TGHY +R+ +DG R + R D +DQSY L T +QL FPL D K Sbjct: 120 DAVVTGHY--ARVITTEDGNRE--LHRAADWAKDQSYVLGVLTHEQLKHAWFPLADTPSK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRH 256 VR A E G +A K DS DICF+ +G D + I + G I +G++LG H Sbjct: 176 AQVRAEAAERGFSVAKKPDSYDICFIPEG---DTRAWLGDHITMRPGLIKDTHGEVLGEH 232 Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G YT+GQR+GL + A G+P FV+ + + VIVG RE L VH I W G Sbjct: 233 PGAQAYTVGQRKGLALGRPAADGKPRFVLEVRPKENEVIVGSRELLAVHEIRGIRATWAG 292 Query: 313 DGLFEDAVV-----------DGFKCFVKIRSSQDPVPVFV--------QRNDDGVY---- 349 + + A + F+ ++R+ DPV + ++G Sbjct: 293 VPVEQAARFLEEPAQLGARSEEFEVTAQVRAHADPVRAKAYMTWAPDPEAEEEGTLRLET 352 Query: 350 -VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 V GVA GQ V Y RVLG I+ Sbjct: 353 VVRLLDPLSGVAPGQTMVLYQG----TRVLGQSTIA 384 >gi|182435820|ref|YP_001823539.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776445|ref|ZP_08235710.1| tRNA-specific 2-thiouridylase mnmA [Streptomyces cf. griseus XylebKG-1] gi|205828974|sp|B1VZW7|MNMA_STRGG RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|178464336|dbj|BAG18856.1| putative tRNA (5-methylaminomethyl-2-thiouridine)-methyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656778|gb|EGE41624.1| tRNA-specific 2-thiouridylase mnmA [Streptomyces cf. griseus XylebKG-1] Length = 378 Score = 199 bits (507), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 142/384 (36%), Positives = 200/384 (52%), Gaps = 26/384 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDA 76 + +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G+ CC +D DA Sbjct: 7 RPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDA 65 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL L Sbjct: 66 RRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALAL 125 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194 G D + TGHY + + + +DG R + R D+ +DQSY L ++QL FPLGD Sbjct: 126 GFDAVCTGHY--ATVVLAEDGSRE--LHRASDMAKDQSYVLGVLDEKQLAHAMFPLGDTL 181 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 K+ +R A GL +A K DS DICF+ G + G A EGDI+ +G LG Sbjct: 182 TTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLANRLGGPA-EGDILDESGTKLG 240 Query: 255 RHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 H G +TIGQR+GL + G+P +V+ + ++ V VGP E+L+V + + W Sbjct: 241 THEGAFGFTIGQRKGLKIGHPAPDGKPRYVLDISPVNNTVTVGPVEALDVTALTAIKPRW 300 Query: 311 LGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 G G + ++R+ V + D + V F + GVA GQA V Y Sbjct: 301 CG------TPPSGPGTYTAQLRAHGGESEVTAELVDGTELNVTFTEPVRGVAPGQAVVLY 354 Query: 369 TSDSNEARVLGGGIISGSKRSDAV 392 + RV+G I+ + R + V Sbjct: 355 ----DGTRVVGSATIATTVRRERV 374 >gi|227552294|ref|ZP_03982343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TX1330] gi|257895129|ref|ZP_05674782.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium Com12] gi|293377883|ref|ZP_06624064.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium PC4.1] gi|227178565|gb|EEI59537.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TX1330] gi|257831694|gb|EEV58115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium Com12] gi|292643430|gb|EFF61559.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium PC4.1] Length = 373 Score = 199 bits (507), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 142/379 (37%), Positives = 202/379 (53%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D +V Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAA 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R +D +DQ+YFL +Q+QL FPLG M+K VR Sbjct: 125 ATGHYAQ----VTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGMEKSEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS ICF+ + + + N A +G++V L+G++ G+H G++ Sbjct: 181 AIAERAGLATAKKKDSTGICFIGEKNFKQFLS--NYLPAKKGNMVTLDGEVKGQHAGLMY 238 Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314 YTIGQR+GLG+ G EP FVV D ++ + VG +L + EI++ + Sbjct: 239 YTIGQRQGLGIGGGGDSQEPWFVVGKDLATNTLYVGQGFHHPALYATSLDASEIHFTTN- 297 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + + FKC K R Q VPV V+ DD V F++ + GQA VFY + Sbjct: 298 ---EPMPKEFKCTAKFRYRQQDVPVTVRLLDDNRAEVVFDEPVRAITPGQAVVFY----D 350 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I + + V Sbjct: 351 GMECLGGGLIDHAYQETKV 369 >gi|205822381|sp|A2RLX1|MNMA_LACLM RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 376 Score = 199 bits (507), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 141/385 (36%), Positives = 198/385 (51%), Gaps = 24/385 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+P RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 4 KSPAQTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 60 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 V D I V +Y ++E+ + + V F + Y AG TP P V CN+ +KF L + Sbjct: 61 VAAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAME 120 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY + R +DG M R D +DQ+YFL TQ+QL FPLG + Sbjct: 121 LGADYVATGHYAQVR--TDEDGTVH--MLRGADNNKDQTYFLSQLTQEQLKKTMFPLGHL 176 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + GL A K DS ICF+ + + + A G ++ L+G +G Sbjct: 177 EKPEVRRIAEKAGLATAKKKDSTGICFIGEKNFKKFLGEYLP--AQPGKMMTLDGVEMGN 234 Query: 256 HNGIINYTIGQRRGLGVA------MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 H G++ YTIGQR GLG+ +P FVV D ++ + VG + +Y ++ Sbjct: 235 HAGLMYYTIGQRGGLGIGGQHGQLTSDPWFVVGKDLTTNTLYVG--QGFHHEHLYSTSLD 292 Query: 310 WLGDGLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 D F + + F C K R Q+ V + N D V VDF++ + GQA VF Sbjct: 293 -ASDLSFTREMPETFDLHCTAKFRYRQEDTGVTIHVNGDKVTVDFDEPVRAITPGQAVVF 351 Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392 Y + LGG +I + + V Sbjct: 352 YDGE----ECLGGAMIDVAYKEQKV 372 >gi|148272583|ref|YP_001222144.1| tRNA-specific 2-thiouridylase MnmA [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|166234849|sp|A5CQU4|MNMA_CLAM3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|147830513|emb|CAN01448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltr [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 387 Score = 199 bits (507), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 136/371 (36%), Positives = 186/371 (50%), Gaps = 26/371 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+++ AMSGGVDS+V AA G+DV GV L L + + R GS CC +D DARR Sbjct: 1 MKILAAMSGGVDSAVAAARAVEAGHDVTGVHLAL-SRMPGTLRTGSRGCCTIEDSMDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ ERF V+ F + Y AG TP PC+ CN +KF+ +L LG Sbjct: 60 AADLLGIPFYVWDFSERFAADVVDDFVAEYQAGRTPNPCMRCNERIKFAAVLEKALDLGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197 D + TGHY + + G DG+ + R +DQSY L T +Q+ FPLG K Sbjct: 120 DAVCTGHY--ADVLEGPDGQPE--LHRAAAWAKDQSYVLGVLTAEQIAHSYFPLGSTPSK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRH 256 VR A+ G+ +A K DS DICF+ G + R+ A G+I+ G +G H Sbjct: 176 AEVRAEAQARGIQVAQKPDSHDICFIPDGDTRGWLADRVG---AEPGEILDGEGNAIGTH 232 Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G +T+GQR+GL + G P FV+ + + V+VGP+E+L + I W G Sbjct: 233 QGAAAFTVGQRKGLAIGTPAPDGRPRFVLEIRPKDNTVVVGPQEALAIREIAGSSYTWAG 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEV--GVASGQACVFY 368 F C V+IR+ DPVP V D V + + GVA GQ V Y Sbjct: 293 TPPTRPD--QPFDCDVQIRAHADPVPARAAVSVVDGSVQLVITPRDPLHGVAPGQTAVVY 350 Query: 369 TSDSNEARVLG 379 RVLG Sbjct: 351 AG----TRVLG 357 >gi|120598593|ref|YP_963167.1| tRNA-specific 2-thiouridylase MnmA [Shewanella sp. W3-18-1] gi|166235084|sp|A1RIW8|MNMA_SHESW RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|120558686|gb|ABM24613.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella sp. W3-18-1] Length = 372 Score = 199 bits (507), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 127/374 (33%), Positives = 200/374 (53%), Gaps = 31/374 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 12 KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKDAQAVCD 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 69 KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDADY 128 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 129 IAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKHQV 184 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+EMGL DK DS ICF+ + K+ + + A G+I G+++G H G++ Sbjct: 185 REIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEVIGTHQGLM 242 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ + +P +VV D + +IVG PR L + + + +++W Sbjct: 243 YHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPR--LMSNGMTVNQLHW 300 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYT 369 + VDG VK R Q VP + D+ V F++ V GQ+ VFY Sbjct: 301 VD----RTGPVDGCHITVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQSVVFYD 356 Query: 370 SDSNEARVLGGGII 383 + LGGGII Sbjct: 357 GEV----CLGGGII 366 >gi|192361469|ref|YP_001982951.1| tRNA-specific 2-thiouridylase MnmA [Cellvibrio japonicus Ueda107] gi|190687634|gb|ACE85312.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cellvibrio japonicus Ueda107] Length = 378 Score = 199 bits (507), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 122/374 (32%), Positives = 197/374 (52%), Gaps = 27/374 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ ++ ++ C A D+ DA+RVCD Sbjct: 20 KVIVGMSGGVDSSVSALLLQQQGYAVEGLFMKNWDEDDGTEY---CTAKADLADAQRVCD 76 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + ++ + + V F Y AG TP P + CNR +KF + + LG +++ Sbjct: 77 KLGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKVFMEYAQMLGGELI 136 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R D ++ + +D +DQSYFL A + + FP+G+++K VR Sbjct: 137 ATGHYVRRA-----DRNGHTLLLKGLDPNKDQSYFLHAVGEAEFAKSLFPVGELEKPEVR 191 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A E GL +K DS ICF+ + ++ D +++ A G+I +GQ++G H G++ Sbjct: 192 RIAEEHGLVTHNKKDSTGICFIGERRFKDFLQQYLP--AQPGEIQTPDGQVIGEHMGLMY 249 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGD 313 +TIGQR+GLG+ A EP FV D + +IV L + + ++ +W+ Sbjct: 250 HTIGQRQGLGIGGVKGANEEPWFVAQKDLGRNVLIVVQGTDHPLLYTNHLLAQQTHWING 309 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 A F+C K R Q VQ D+G + V F++ + V GQ+ V Y D+ Sbjct: 310 ----SAPASEFRCMAKTRYRQPDQACRVQVLDNGRLDVFFDEPQRAVTPGQSLVLYDGDT 365 Query: 373 NEARVLGGGIISGS 386 LGG +I + Sbjct: 366 ----CLGGAVIEST 375 >gi|330444363|ref|YP_004377349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydophila pecorum E58] gi|328807473|gb|AEB41646.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydophila pecorum E58] Length = 361 Score = 199 bits (507), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 140/369 (37%), Positives = 196/369 (53%), Gaps = 29/369 (7%) Query: 23 VVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VVVAMSGGVDSSVVA LLKR Y+V+G+ ++ + + C + QD D +VC Sbjct: 5 VVVAMSGGVDSSVVAYLLKRYTSYNVVGLFMKNWEEKT---HDDVCLSAQDYADVEKVCS 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +Y + ++ V F Y+ G TP P + CNR +KF+ L R+LG D L Sbjct: 62 QLDIPYYTVSFVREYQELVFSRFLKEYSLGYTPNPDILCNREIKFALLQKKVRELGGDFL 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY RS L D + R +D +DQSYFL T +Q L ++ FPLG+MKK VR Sbjct: 122 ATGHYCRSNL----DASGVSLF-RGVDRNKDQSYFLSGTPRQALANVLFPLGEMKKNEVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-ILGRHNGII 260 LA E GL A K DS ICF+ + + +++ EGDIV + Q ILG+H G Sbjct: 177 ALAEEAGLATARKKDSTGICFIGKRPFKQFLEQFVP--KKEGDIVDWDTQTILGKHEGAH 234 Query: 261 NYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHR--IYLREINWLGDGL 315 YTIGQRRGL + +P +VV ++KN ++ G L ++R ++ +E+NW D Sbjct: 235 YYTIGQRRGLDLGGTSKPCYVVGKDMEKNLVYIVQGEDHPL-LYRTELFAKELNWFVD-- 291 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 V V+ RS + + FV ++D + V F V GQ FY D Sbjct: 292 --PKSVHTCTAQVRYRSEDEQCTIEFV--SEDRLRVCFITPIKAVTPGQTIAFYQGD--- 344 Query: 375 ARVLGGGII 383 R LG G+I Sbjct: 345 -RCLGSGVI 352 >gi|125624516|ref|YP_001032999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|124493324|emb|CAL98297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|300071310|gb|ADJ60710.1| tRNA-specific 2-thiouridylase MnmA [Lactococcus lactis subsp. cremoris NZ9000] Length = 384 Score = 199 bits (507), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 141/385 (36%), Positives = 198/385 (51%), Gaps = 24/385 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+P RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 12 KSPAQTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 68 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 V D I V +Y ++E+ + + V F + Y AG TP P V CN+ +KF L + Sbjct: 69 VAAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAME 128 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY + R +DG M R D +DQ+YFL TQ+QL FPLG + Sbjct: 129 LGADYVATGHYAQVR--TDEDGTVH--MLRGADNNKDQTYFLSQLTQEQLKKTMFPLGHL 184 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + GL A K DS ICF+ + + + A G ++ L+G +G Sbjct: 185 EKPEVRRIAEKAGLATAKKKDSTGICFIGEKNFKKFLGEYLP--AQPGKMMTLDGVEMGN 242 Query: 256 HNGIINYTIGQRRGLGVA------MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 H G++ YTIGQR GLG+ +P FVV D ++ + VG + +Y ++ Sbjct: 243 HAGLMYYTIGQRGGLGIGGQHGQLTSDPWFVVGKDLTTNTLYVG--QGFHHEHLYSTSLD 300 Query: 310 WLGDGLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 D F + + F C K R Q+ V + N D V VDF++ + GQA VF Sbjct: 301 -ASDLSFTREMPETFDLHCTAKFRYRQEDTGVTIHVNGDKVTVDFDEPVRAITPGQAVVF 359 Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392 Y + LGG +I + + V Sbjct: 360 YDGE----ECLGGAMIDVAYKEQKV 380 >gi|227495064|ref|ZP_03925380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinomyces coleocanis DSM 15436] gi|226831516|gb|EEH63899.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinomyces coleocanis DSM 15436] Length = 378 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 135/386 (34%), Positives = 210/386 (54%), Gaps = 31/386 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ A+SGGVDS+V AA G+DV V + L +S + S R G+ CC+ +D DA R Sbjct: 1 MRVLAALSGGVDSAVAAARAVEAGHDVTAVHMALSSSPQ-SCRMGARGCCSLEDSVDAAR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 +T+ + +YV+D E F VI F Y G TP PCV CN VKF +L + LG Sbjct: 60 AAETLGIPYYVWDLAEEFEETVINDFVEQYQLGRTPNPCVRCNEFVKFRELAERAKALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197 D + TGHY +R+ G +GK+ + R DL +DQSY L +++L + PLGD+ K Sbjct: 120 DAVCTGHY--ARVEEGPNGKQ---LLRARDLLKDQSYVLAVMGEEELDRVILPLGDVTSK 174 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHLNGQILGRH 256 +VR+ A GL +++K DS DICF+ G ++ R+ G+IV +G +LG H Sbjct: 175 TAVREEAEARGLGVSNKPDSYDICFIPDGDTQGFLRARLGENT---GNIVDPDGNVLGTH 231 Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL- 311 G YT+GQR+GLG+ G+P +V+ +++ V+VG L + + E+ WL Sbjct: 232 RGYFEYTVGQRKGLGIDRPAEDGKPRYVLETRPSTNEVVVGSATLLSIDTVRANELTWLA 291 Query: 312 ----GDGLFE---DAVVDGFKC-FVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASG 362 G+ L E + D +C + ++R+ +PV +++ + V + + G+A+G Sbjct: 292 TDDQGEVLTEISQEMGTDDDQCLYAQMRAHGRAIPVVGLEKTTETVKIRLGEMVRGIAAG 351 Query: 363 QACVFYTSDSNEARVLGGGIISGSKR 388 Q+ V Y + RVL +I ++R Sbjct: 352 QSLVIYRGN----RVLAHAVIEFARR 373 >gi|157370264|ref|YP_001478253.1| tRNA-specific 2-thiouridylase MnmA [Serratia proteamaculans 568] gi|166991124|sp|A8GDD5|MNMA_SERP5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|157322028|gb|ABV41125.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Serratia proteamaculans 568] Length = 367 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 128/373 (34%), Positives = 203/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVTAYLLQQQGYQVAGLFMKNWEEDDDEE---YCSAATDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADF 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + D + R++ R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 125 IATGHYVRRQ----DVDSKSRLL-RGVDGNKDQSYFLYTLSHEQVAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ D + R A G IV ++GQ +G H G++ Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVSVDGQTVGEHQGLM 237 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ + +P +VV D N+ V+ E + + L ++++W+ Sbjct: 238 YHTLGQRKGLGIGGMKDSSEDPWYVVDKDVANNVLVVAQGHEHPRLMSVGLIAQQLHWV- 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 D L + F+C VK R Q +P V D+ + V F++ V GQ+ VFY + Sbjct: 297 DRL---PLSGPFRCTVKTRYRQQDIPCTVTPLDEQRIEVRFDEPVAAVTPGQSAVFYQDE 353 Query: 372 SNEARVLGGGIIS 384 LGGGII Sbjct: 354 I----CLGGGIIE 362 >gi|300814306|ref|ZP_07094578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511573|gb|EFK38801.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 351 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 132/373 (35%), Positives = 188/373 (50%), Gaps = 30/373 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ +VV+ MSGGVDSSV A LLK GYDVIGV ++ + G C A +D D + Sbjct: 2 KNKKVVLGMSGGVDSSVAAILLKNQGYDVIGVFMRNWAD------DGICTATEDYMDVVK 55 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + ++ ++EE +RN V F + Y G TP P V CN +KF L+ Sbjct: 56 VASQLGIKYFTVNFEEEYRNQVFSYFLNEYKKGRTPNPDVMCNTEIKFKAFLNYALNFDC 115 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +A GHY R++ DGK +CR +D +DQSYFL T+ L FP+G+++K+ Sbjct: 116 DYIAMGHYARTK---NIDGK--TYLCRGLDNNKDQSYFLSRVTEDALKKTLFPIGELQKD 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A++ GL A K DS ICF+ + + + + G IV G +LG H+G Sbjct: 171 QVRKIAKDYGLSTALKKDSTGICFIGERDFNKFLDQF--LFTKPGKIVDTQGNVLGEHSG 228 Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGPRE---SLEVHRIYLREINWL- 311 +I+YTIGQRR G GEP FV D ++ +IV E +L + ++ W+ Sbjct: 229 LIHYTIGQRRGMGIGGKGNGEPFFVADKDLKNNLLIVAQGEKNPALYKKVFQVEDLFWIS 288 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 G F K VKIR ++ N+ +V + GV GQ VFY Sbjct: 289 GKPHFP------LKMTVKIRYRAKDEEALLEENEGKYFVKLKNPLKGVTPGQVAVFY--- 339 Query: 372 SNEARVLGGGIIS 384 N+ LG GII Sbjct: 340 -NDEICLGSGIIK 351 >gi|205821993|sp|A6WP69|MNMA_SHEB8 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 372 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 127/374 (33%), Positives = 199/374 (53%), Gaps = 31/374 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 12 KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKDAQAVCD 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 69 KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDADY 128 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 129 IAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKHEV 184 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+EMGL DK DS ICF+ + K+ + + A G+I G+++G H G++ Sbjct: 185 REIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEVIGTHQGLM 242 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ + +P +VV D + +IVG PR L + + +++W Sbjct: 243 YHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPR--LMSTGMTVNQLHW 300 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYT 369 + VDG VK R Q VP + D+ V F++ V GQ+ VFY Sbjct: 301 VD----RTGPVDGCHIAVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQSAVFYD 356 Query: 370 SDSNEARVLGGGII 383 + LGGGII Sbjct: 357 GEV----CLGGGII 366 >gi|319426629|gb|ADV54703.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella putrefaciens 200] Length = 372 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 127/374 (33%), Positives = 199/374 (53%), Gaps = 31/374 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 12 KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKDAQAVCD 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 69 KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDADY 128 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 129 IAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKHQV 184 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+EMGL DK DS ICF+ + K+ + + A G+I G+++G H G++ Sbjct: 185 REIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEVIGTHQGLM 242 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ + +P +VV D + +IVG PR L + + +++W Sbjct: 243 YHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPR--LMSTGMTVNQLHW 300 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYT 369 + VDG VK R Q VP + D+ V F++ V GQ+ VFY Sbjct: 301 VD----RTGPVDGCHITVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQSAVFYD 356 Query: 370 SDSNEARVLGGGII 383 + LGGGII Sbjct: 357 GEV----CLGGGII 366 >gi|126174691|ref|YP_001050840.1| tRNA-specific 2-thiouridylase MnmA [Shewanella baltica OS155] gi|125997896|gb|ABN61971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella baltica OS155] Length = 392 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 127/374 (33%), Positives = 199/374 (53%), Gaps = 31/374 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 32 KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKDAQAVCD 88 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 89 KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDADY 148 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 149 IAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKHEV 204 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+EMGL DK DS ICF+ + K+ + + A G+I G+++G H G++ Sbjct: 205 REIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEVIGTHQGLM 262 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ + +P +VV D + +IVG PR L + + +++W Sbjct: 263 YHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPR--LMSTGMTVNQLHW 320 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYT 369 + VDG VK R Q VP + D+ V F++ V GQ+ VFY Sbjct: 321 VD----RTGPVDGCHIAVKTRYRQQDVPCTLTYTDEHTLGVVFDEPVAAVTPGQSAVFYD 376 Query: 370 SDSNEARVLGGGII 383 + LGGGII Sbjct: 377 GEV----CLGGGII 386 >gi|296388914|ref|ZP_06878389.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa PAb1] gi|313107663|ref|ZP_07793846.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas aeruginosa 39016] gi|310880348|gb|EFQ38942.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas aeruginosa 39016] Length = 363 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 127/381 (33%), Positives = 200/381 (52%), Gaps = 36/381 (9%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++V MSGGVDSSV A LL + GY V G+ ++ ++ ++ C A +D+ DA+ VCD Sbjct: 1 MIVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWDEDDGTE---YCTAREDLADAQAVCDR 57 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + + ++ + + V F + Y AG TP P + CNR +KF L LGAD++A Sbjct: 58 IGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLIA 117 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K VR Sbjct: 118 TGHYVRRR-----DRDGRTELLKGLDPNKDQSYFLHAVGGEQIARSLFPVGELEKPEVRA 172 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A + GL A K DS ICF+ + ++ D +K+ A GDI G+++GRH+G++ + Sbjct: 173 IAEKHGLATAKKKDSTGICFIGERRFTDFLKQYLP--AQPGDIETTEGKVIGRHSGLMYH 230 Query: 263 TIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYLREIN 309 TIGQR+GLG+ A +P +V+ D + ++VG +L RIY Sbjct: 231 TIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLASRIY----- 285 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 W+ E + K+R Q +++ +G F++ + V GQ+ VFY Sbjct: 286 WVNPVELERPR----RLRAKVRYRQSDQDCVLEKTAEGYRAVFDEPQRAVTPGQSVVFYD 341 Query: 370 SDSNEARVLGGGIISGSKRSD 390 D LGGG+I ++ D Sbjct: 342 GDV----CLGGGVIETAEAWD 358 >gi|217973050|ref|YP_002357801.1| tRNA-specific 2-thiouridylase MnmA [Shewanella baltica OS223] gi|205821978|sp|A3D5F8|MNMA_SHEB5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|254811460|sp|B8E945|MNMA_SHEB2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|217498185|gb|ACK46378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella baltica OS223] Length = 372 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 127/374 (33%), Positives = 199/374 (53%), Gaps = 31/374 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 12 KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKDAQAVCD 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 69 KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDADY 128 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 129 IAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKHEV 184 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+EMGL DK DS ICF+ + K+ + + A G+I G+++G H G++ Sbjct: 185 REIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEVIGTHQGLM 242 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ + +P +VV D + +IVG PR L + + +++W Sbjct: 243 YHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPR--LMSTGMTVNQLHW 300 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYT 369 + VDG VK R Q VP + D+ V F++ V GQ+ VFY Sbjct: 301 VD----RTGPVDGCHIAVKTRYRQQDVPCTLTYTDEHTLGVVFDEPVAAVTPGQSAVFYD 356 Query: 370 SDSNEARVLGGGII 383 + LGGGII Sbjct: 357 GEV----CLGGGII 366 >gi|153000990|ref|YP_001366671.1| tRNA-specific 2-thiouridylase MnmA [Shewanella baltica OS185] gi|151365608|gb|ABS08608.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella baltica OS185] Length = 392 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 127/374 (33%), Positives = 199/374 (53%), Gaps = 31/374 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 32 KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKDAQAVCD 88 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 89 KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDADY 148 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 149 IAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKHEV 204 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+EMGL DK DS ICF+ + K+ + + A G+I G+++G H G++ Sbjct: 205 REIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEVIGTHQGLM 262 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ + +P +VV D + +IVG PR L + + +++W Sbjct: 263 YHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPR--LMSTGMTVNQLHW 320 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYT 369 + VDG VK R Q VP + D+ V F++ V GQ+ VFY Sbjct: 321 VD----RTGPVDGCHIAVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQSAVFYD 376 Query: 370 SDSNEARVLGGGII 383 + LGGGII Sbjct: 377 GEV----CLGGGII 386 >gi|327398348|ref|YP_004339217.1| tRNA-specific 2-thiouridylase mnmA [Hippea maritima DSM 10411] gi|327180977|gb|AEA33158.1| tRNA-specific 2-thiouridylase mnmA [Hippea maritima DSM 10411] Length = 338 Score = 199 bits (506), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 123/353 (34%), Positives = 192/353 (54%), Gaps = 37/353 (10%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+V VA+SGGVDS+ A LLK++G++V+G+TL+LY+ K+ A ++ Sbjct: 1 MKVAVALSGGVDSATAAFLLKKEGHEVVGITLKLYDDESYIKQ------------AEKIA 48 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + + FDY F+ VI F ++Y G+TP PCV CNR VKF+ LL V +L D Sbjct: 49 EFLGIEWHCFDYSLEFKKGVIDYFFNTYLNGKTPNPCVVCNRYVKFNYLLEVADKLNCDK 108 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPM----DLERDQSYFLFATTQQQLCDLRFPLGDMK 196 LATGHY R R+++ +P+ E+DQSYFL + Q+ L FPLG++ Sbjct: 109 LATGHYARI---------SRKLLNKPLIAKSPSEKDQSYFLCFLNESQIKKLMFPLGELN 159 Query: 197 -KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 KE+ R +A ++ L +A K DS D+CFV +G Y D++K N EG + L+G+ + + Sbjct: 160 SKETTRQIAEKINLSLAQKKDSFDVCFV-RGNYRDLLK--NRLKEKEGYFI-LSGKKIKK 215 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H GI +YT+GQR+GL +A E L+V + + + + ++ L Y R + + L Sbjct: 216 HEGIFSYTVGQRKGLRIAYKEALYVKSIHPKTGNIYLSTKKEL-----YKRTVRASVENL 270 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ-ACVF 367 A + FK K+RS D + + ++F+ GQ ACV+ Sbjct: 271 LY-APSEKFKAKAKLRSKMDKAFCTITLDKKSFLMEFDHPVFAPTPGQVACVY 322 >gi|307128600|ref|YP_003880630.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Sulcia muelleri CARI] gi|306483062|gb|ADM89932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Sulcia muelleri CARI] Length = 387 Score = 199 bits (506), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 124/402 (30%), Positives = 204/402 (50%), Gaps = 56/402 (13%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV A LLK+ GYDVIG+ L+ YN C +D DA V Sbjct: 3 RVIVGMSGGVDSSVAALLLKKKGYDVIGIYLKYYNIN------NKCPWREDSIDAMLVSQ 56 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 ++ + Y+ D + ++ +I Y G TP P + CN +KF L +R +D++ Sbjct: 57 SLKIPFYIIDITKNYKKLIINYIYKEYKKGFTPNPDILCNSKIKFKIFLEKSRFFKSDLI 116 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R + +GK + +D +DQSYFL Q Q+ + FPLG++ K+ VR Sbjct: 117 ATGHYVRKEK-IKKNGKIYYKIISGIDDNKDQSYFLCNLNQDQIQNSIFPLGNLNKKKVR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN------------ 249 ++A + L A K DSQ ICF+ + K+ + +K+ + +GDI+ +N Sbjct: 176 EIANKYNLINAKKKDSQGICFIGKIKFLNFLKK--KLVEKKGDIIEINKNNHIYKYDKYK 233 Query: 250 ---------------------GQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNS 287 G+I+G+H G+ +T GQR+GL + PLF++ D + Sbjct: 234 FSSKKEFLFFLSKKIKYKKEYGKIIGKHIGVHYFTKGQRKGLKIGGYKYPLFIIEKDIIN 293 Query: 288 SRVIVG-----PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ 342 + + VG P +V I + I+W+ + + + +C ++ R + +F+ Sbjct: 294 NILYVGMGKNHPGLYTKVICIKKKNIHWMNENFIKKKI--EVECRIRYRQNFQKATLFIN 351 Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 +N +YV+FE ++ V +GQ V+Y ++ ++G G+IS Sbjct: 352 KNS--LYVEFEIPQLAVNAGQFIVWYINNE----IIGSGLIS 387 >gi|261252577|ref|ZP_05945150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio orientalis CIP 102891] gi|260935968|gb|EEX91957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio orientalis CIP 102891] Length = 378 Score = 199 bits (506), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 124/380 (32%), Positives = 203/380 (53%), Gaps = 33/380 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + + C A +D+ DA+ VCD Sbjct: 12 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 69 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128 Query: 141 LATGHYIRSRLYVGDD---GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 +A GHY+R ++ G++ + M R +D +DQSYFL+ + Q+ FP+G+++K Sbjct: 129 IAMGHYVRRTFPTAEELAAGEKPK-MLRGLDGNKDQSYFLYTLSSDQVARSLFPVGELEK 187 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR +A E L A K DS ICF+ + K+ D + R A G+I G+++G+HN Sbjct: 188 PEVRRIAEEQDLITAKKKDSTGICFIGERKFTDFLGRYLP--AQPGNIETPEGKVIGQHN 245 Query: 258 GIINYTIGQRRGLGVAMG-------EPLFVVYLDKNSSRVIV-----GPRESLEVHRIYL 305 G++ +T+GQR+GL + +P FV DK+ R ++ L+ + Sbjct: 246 GLMYHTLGQRKGLHIGGQKGGGGNEDPWFVG--DKDLKRNVLIAVQGKDHPMLKSQGLIA 303 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQA 364 +++W+ DA+ + +C VK R Q +P + +D+ + V F++ +V V GQ+ Sbjct: 304 SQLHWVD----RDAIKEPLQCTVKTRYRQTDIPCTIIPIDDENIKVIFDEPQVAVTPGQS 359 Query: 365 CVFYTSDSNEARVLGGGIIS 384 VFY + LGGGII Sbjct: 360 AVFYKDEV----CLGGGIIE 375 >gi|238920209|ref|YP_002933724.1| tRNA-specific 2-thiouridylase MnmA [Edwardsiella ictaluri 93-146] gi|259495829|sp|C5B8B9|MNMA_EDWI9 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|238869778|gb|ACR69489.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Edwardsiella ictaluri 93-146] Length = 367 Score = 199 bits (506), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 128/375 (34%), Positives = 203/375 (54%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDSDE---YCSAATDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 RLGIELHTVNFAAEYWDNVFELFLQEYRAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R D + R +D +DQSYFL+ + QQ+ FP+G+++K V Sbjct: 125 IATGHYVRRR-----DINGTTQLLRGVDANKDQSYFLYTLSHQQVAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ + + R A G IV ++G+ +G H G++ Sbjct: 180 RRIAAQLDLATAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIVTVDGETIGEHQGLM 237 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ EP +VV D +++ ++V PR L + + ++++W Sbjct: 238 YHTLGQRKGLGIGGTKEGSEEPWYVVDKDLDNNVLVVAQGHDHPR--LFSNGLIAQQLHW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + D L A + +C VK R Q +P V D+ + V F++ V GQ+ VFY Sbjct: 296 V-DRLPLGAPL---RCTVKTRYRQADIPCLVTPLADERIEVRFDQPVAAVTPGQSAVFYQ 351 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 DEV----CLGGGIIE 362 >gi|297191915|ref|ZP_06909313.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces pristinaespiralis ATCC 25486] gi|197721106|gb|EDY65014.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces pristinaespiralis ATCC 25486] Length = 375 Score = 199 bits (506), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 138/361 (38%), Positives = 192/361 (53%), Gaps = 25/361 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDA 76 + +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G+ CC +D DA Sbjct: 7 RPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDA 65 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL L Sbjct: 66 RRAADVIGIPFYVWDLAERFREDVVEDFIAEYEAGRTPNPCLRCNEKIKFAALLDKALAL 125 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194 G D + TGHY + + + DDG R + R D+ +DQSY L ++QL FPLGD Sbjct: 126 GFDAVCTGHY--ATVVLKDDGSRE--LHRASDMAKDQSYVLGVLDERQLAHAMFPLGDTL 181 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQIL 253 K+ +R A GL +A K DS DICF+ G + R+ EGDIV +G+ L Sbjct: 182 TTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLADRLGTA---EGDIVDESGKKL 238 Query: 254 GRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 G H G +TIGQR+GL + G+P +V+ + ++ V VGP E+L+V + + Sbjct: 239 GSHEGAFGFTIGQRKGLRIGHPAPDGKPRYVLDISPVNNTVTVGPVEALDVTALTAIKPR 298 Query: 310 WLGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVF 367 W G A +G + ++R+ V + D + V F + GVA GQA V Sbjct: 299 WCG------AAPEGPGTYTAQLRAHGGETEVTAELVDGSELRVTFTEPVRGVAPGQAVVL 352 Query: 368 Y 368 Y Sbjct: 353 Y 353 >gi|329770388|ref|ZP_08261770.1| tRNA-specific 2-thiouridylase mnmA [Gemella sanguinis M325] gi|328836511|gb|EGF86171.1| tRNA-specific 2-thiouridylase mnmA [Gemella sanguinis M325] Length = 370 Score = 199 bits (506), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 130/370 (35%), Positives = 188/370 (50%), Gaps = 25/370 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV MSGGVDSSV A LLK GYDVIGV ++ + + KG C A +D D +VC+ Sbjct: 6 KVVVGMSGGVDSSVTAYLLKEQGYDVIGVFMKNWEEKDD---KGVCVAEKDYADVIKVCE 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +Y ++E+ + + V F Y G TP P + CN+ +KF L LGAD + Sbjct: 63 QLDIPYYSINFEKEYWDKVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLEYAEDLGADYV 122 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + D +R++ R +D +DQ+YFL Q Q+ ++ FP+G+++K+ VR Sbjct: 123 ATGHYARVK-----DENGQRLLLRGVDNNKDQTYFLSQLKQHQIKNILFPVGELEKKDVR 177 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A E GL A K DS ICF+ + + + + + + G +V L+G + G H G+++ Sbjct: 178 RIAEEAGLATAKKKDSTGICFIGEKNFREFLSQYLP--SQSGKMVDLDGNVRGEHIGLMH 235 Query: 262 YTIGQRRGLGVAM-----GEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 YTIGQR GLG+ GE F L+ N V G L Sbjct: 236 YTIGQRHGLGIGGTKDTDGEAWFACGKDLENNILYVCQGFHNEKLYSDSLLASSLSF--- 292 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 +D + F C K R Q V V+ D V V +++ V GQA VFY D Sbjct: 293 TTKDPQPNKFTCTAKFRYRQPDTEVEVEILEGDKVRVVYKEPVRAVTPGQAVVFYDGDI- 351 Query: 374 EARVLGGGII 383 LGG I Sbjct: 352 ---CLGGATI 358 >gi|271500468|ref|YP_003333493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dickeya dadantii Ech586] gi|270344023|gb|ACZ76788.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dickeya dadantii Ech586] Length = 370 Score = 199 bits (506), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 127/376 (33%), Positives = 205/376 (54%), Gaps = 33/376 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + ++ C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDDTE---YCSAATDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + ++ + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGITLHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + DGK R + R +D +DQSYFL+ + QQL FP+G+++K V Sbjct: 125 IATGHYVRRQ---DIDGKSR--LLRGLDGNKDQSYFLYTLSHQQLAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259 R +A ++ L A K DS ICF+ + K+ D + R A G I+ + +G+++G H G+ Sbjct: 180 RKIAEQLDLATARKKDSTGICFIGERKFRDFLARYLP--AQPGPILSVDDGKVMGEHQGL 237 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREIN 309 + +T+GQR+GLG+ +P +VV DK+ + ++ + E R+ ++++ Sbjct: 238 MYHTLGQRKGLGIGGVKEGGDDPWYVV--DKDVASNVLYVAQGHEHPRLMSVGLIAQQLH 295 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368 W+ + + +C VK R Q +P + D D + V FE+ V GQ+ VFY Sbjct: 296 WVD----REPLSAPLRCTVKTRYRQADIPCLLTPLDADRIDVRFEEPVAAVTPGQSAVFY 351 Query: 369 TSDSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 QGEV----CLGGGIIE 363 >gi|269960819|ref|ZP_06175190.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio harveyi 1DA3] gi|269834483|gb|EEZ88571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio harveyi 1DA3] Length = 380 Score = 199 bits (505), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 122/378 (32%), Positives = 201/378 (53%), Gaps = 28/378 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + + C A +D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124 Query: 141 LATGHYIRSRL---YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 +A GHY+R + + + + M R +D +DQSYFL+ + +Q+ FP+GD++K Sbjct: 125 IAMGHYVRRSFPENALPGEEQEKPQMLRGLDGNKDQSYFLYTLSNEQIARSLFPVGDLEK 184 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR +A E L A K DS ICF+ + K+ + + R A G+I G+++G+H Sbjct: 185 PEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQHQ 242 Query: 258 GIINYTIGQRRGLGVAMG-------EPLFVVY--LDKNSSRVIVGP-RESLEVHRIYLRE 307 G++ +T+GQR+GL + +P FV L++N + G L+ + + Sbjct: 243 GLMYHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLASQ 302 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACV 366 ++W+ + + D KC VK R Q+ +P + +D+ + V F++ ++ V GQ+ V Sbjct: 303 LHWVD----REPIRDVMKCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAV 358 Query: 367 FYTSDSNEARVLGGGIIS 384 FY D LGGGII Sbjct: 359 FYKDDV----CLGGGIIE 372 >gi|257886541|ref|ZP_05666194.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium 1,141,733] gi|257822595|gb|EEV49527.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium 1,141,733] Length = 373 Score = 199 bits (505), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 142/379 (37%), Positives = 202/379 (53%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D +V Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVAA 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R +D +DQ+YFL +Q+QL FPLG M+K VR Sbjct: 125 ATGHYAQ----VTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGMEKSEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS ICF+ + + + N A +G++V L+G++ G+H G++ Sbjct: 181 AIAERAGLVTAKKKDSTGICFIGEKNFKQFLS--NYLPAKKGNMVTLDGEVKGQHAGLMY 238 Query: 262 YTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314 YTIGQR+GLG+ G EP FVV D ++ + VG +L + EI++ + Sbjct: 239 YTIGQRQGLGIGGGGDSQEPWFVVGKDLATNTLYVGQGFHHPALYATSLDASEIHFTTN- 297 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + + FKC K R Q VPV V+ DD V F++ + GQA VFY + Sbjct: 298 ---EPMPKEFKCTAKFRYRQQDVPVTVRLLDDNRAEVVFDEPVRAITPGQAVVFY----D 350 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I + + V Sbjct: 351 GMECLGGGLIDHAYQETKV 369 >gi|239917970|ref|YP_002957528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Micrococcus luteus NCTC 2665] gi|259495832|sp|C5CB51|MNMA_MICLC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|239839177|gb|ACS30974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Micrococcus luteus NCTC 2665] Length = 378 Score = 199 bits (505), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 142/382 (37%), Positives = 192/382 (50%), Gaps = 25/382 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+V+ AMSGGVDS+V AA G+DV+GV L L + + R GS CC +D DA R Sbjct: 1 MKVLAAMSGGVDSAVAAARAVDAGHDVVGVHLAL-SRMPGTLRTGSRGCCTIEDASDAWR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + Y +D+ ERF V+ F + Y AG TP PC+ CN +KF+ LL +LG Sbjct: 60 ACERLGIPFYTWDFSERFAEDVVDDFVAEYEAGRTPNPCMRCNERIKFAALLERALELGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197 D + TGHY R G DG + R D +DQSY L T QL FPL D K Sbjct: 120 DAVCTGHYAAVR--PGPDGSLE--LHRAADDAKDQSYVLGVLTADQLAHCLFPLADTPSK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRH 256 E VR A E GL +A K DS DICF+ G + +RI+ G IV GQ LG H Sbjct: 176 ELVRAEAAERGLSVAAKPDSHDICFIPDGDTRGWLAERIDLA---PGPIVDPEGQELGTH 232 Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G +T+GQR+GL + G+P FV+ + ++V+VG RE L+V RI +W G Sbjct: 233 AGAQAFTVGQRKGLAIGRPAPDGKPRFVLEVRPKENKVVVGGRELLDVDRITGIRPSWAG 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVP-----VFVQRNDDGVYVDFEKSEVGVASGQACVF 367 + E F C ++ R+ + V G ++ + GVA GQ V Sbjct: 293 APVPEARTGAWFDCALQFRAHGEIVEARARQRADAAGHPGWEIEPARPLRGVAPGQTAVL 352 Query: 368 YTSDSNEARVLGGGIISGSKRS 389 Y RVLG I ++ + Sbjct: 353 YRG----TRVLGQATIDTARNA 370 >gi|28806117|dbj|BAC59393.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Vibrio parahaemolyticus RIMD 2210633] Length = 362 Score = 199 bits (505), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 123/370 (33%), Positives = 198/370 (53%), Gaps = 28/370 (7%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA+ VCD + + Sbjct: 1 MSGGVDSSVSAYLLKQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCDKLGIH 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGH 145 + ++ + + V F + Y AG TP P + CN+ +KF L + L AD +A GH Sbjct: 58 LHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADYIAMGH 117 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y+R ++G++ + M R +D +DQSYFL+ + +Q+ FP+GD++K VR +A Sbjct: 118 YVRRSF--PENGEKPQ-MLRGLDSNKDQSYFLYTLSHEQVARSLFPVGDLEKPEVRRIAE 174 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 E GL A K DS ICF+ + K+ + + R A G+I G+++G+H G++ +T+G Sbjct: 175 EQGLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQHQGLMYHTLG 232 Query: 266 QRRGLGVAMG-------EPLFVVY--LDKNSSRVIVGP-RESLEVHRIYLREINWLGDGL 315 QR+GL + +P FV LD+N + G L+ + +++W+ Sbjct: 233 QRKGLHIGGRKGGGGNEDPWFVGEKDLDRNVLIAVQGKDHPMLKSEGLLASQLHWVD--- 289 Query: 316 FEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 + + D KC VK R Q +P + +D+ + V F++ ++ V GQ+ VFY D Sbjct: 290 -REPIRDVMKCTVKTRYRQQDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAVFYKDDV-- 346 Query: 375 ARVLGGGIIS 384 LGGGII Sbjct: 347 --CLGGGIIE 354 >gi|297202529|ref|ZP_06919926.1| tRNA methyl transferase [Streptomyces sviceus ATCC 29083] gi|297148131|gb|EFH28850.1| tRNA methyl transferase [Streptomyces sviceus ATCC 29083] Length = 374 Score = 199 bits (505), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 141/384 (36%), Positives = 200/384 (52%), Gaps = 28/384 (7%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQD 72 D + +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G+ CC +D Sbjct: 3 DTTQRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIED 61 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DARR D I + YV+D +RFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 62 SRDARRAADVIGIPFYVWDLADRFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDK 121 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 LG D + TGHY +++ DG R + R D+ +DQSY L ++QL FPL Sbjct: 122 ALALGFDAVCTGHY--AKVVTLADGSRE--LHRASDMAKDQSYVLGVLDERQLAHALFPL 177 Query: 193 GD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLN 249 GD K+ +R A GL +A K DS DICF+ G + R+ EGDIV + Sbjct: 178 GDTVTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGRA---EGDIVDES 234 Query: 250 GQILGRHNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 G +G H G +TIGQR+GL + A G+P +V+ + ++ V VGP +L+V + Sbjct: 235 GAKVGTHEGAYGFTIGQRKGLRIGTPAADGKPRYVLDISPVNNTVTVGPAAALDVTALSA 294 Query: 306 REINWLGDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 + W G A G + ++R+ V + D + V F + GVA GQA Sbjct: 295 IKPRWCG------AAPTGPGTYTAQLRAHGGETEVTAELVDGELRVSFTEPVRGVAPGQA 348 Query: 365 CVFYTSDSNEARVLGGGIISGSKR 388 V Y ++ RV+G I+ + R Sbjct: 349 IVLY----DDTRVVGSATIATTVR 368 >gi|153826012|ref|ZP_01978679.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae MZO-2] gi|149740232|gb|EDM54379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae MZO-2] Length = 372 Score = 199 bits (505), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 123/375 (32%), Positives = 199/375 (53%), Gaps = 30/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 13 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCD 69 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 I + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 70 KIGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 129 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R +G++ + M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 130 IAMGHYVRRTF--PQNGEKPQ-MLRGLDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 186 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A K DS ICF+ + K+ D + R A G I G+++G H G++ Sbjct: 187 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 244 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLREINW 310 +T+GQR+GL + + +P +V DK+ R ++ L+ H + +++W Sbjct: 245 YHTLGQRKGLHIGGMKESSEQPWYVA--DKDLKRNVLIAVQGADHPLLKSHGLVAAQLHW 302 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + + +C VK R Q + + +DD + V F++ +V V GQ+ VFY Sbjct: 303 VD----RTPITEPVRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAVFYQ 358 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 359 GEI----CLGGGIIE 369 >gi|323494972|ref|ZP_08100063.1| tRNA-specific 2-thiouridylase MnmA [Vibrio brasiliensis LMG 20546] gi|323310767|gb|EGA63940.1| tRNA-specific 2-thiouridylase MnmA [Vibrio brasiliensis LMG 20546] Length = 378 Score = 199 bits (505), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 124/380 (32%), Positives = 201/380 (52%), Gaps = 33/380 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 12 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCD 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 69 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128 Query: 141 LATGHYIRSRLYVGDD---GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 +A GHY+R ++ G++ + M R +D +DQSYFL+ + Q+ FP+G+++K Sbjct: 129 IAMGHYVRRTFPTAEELAAGEKPK-MLRGLDGNKDQSYFLYTLSSDQVARSLFPVGELEK 187 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR +A E L A K DS ICF+ + K+ D + R A GDI G+++G+HN Sbjct: 188 PEVRRIAEEQDLITAKKKDSTGICFIGERKFTDFLGRYLP--AQPGDIETPEGKVIGKHN 245 Query: 258 GIINYTIGQRRGLGVAMG-------EPLFVVYLDKNSSRVIV-----GPRESLEVHRIYL 305 G++ +T+GQR+GL + +P FV DK+ R ++ L+ + Sbjct: 246 GLMYHTLGQRKGLHIGGQKGGGGNEDPWFVG--DKDLKRNVLIAVQGKDHPMLKSQGLIA 303 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQA 364 +++W+ A+ + +C VK R Q +P + +D+ + V F++ +V V GQ+ Sbjct: 304 SQLHWVDRA----AIKEPLQCTVKTRYRQTDIPCTIIPIDDENIKVIFDEPQVAVTPGQS 359 Query: 365 CVFYTSDSNEARVLGGGIIS 384 VFY + LGGGII Sbjct: 360 AVFYKDEV----CLGGGIIE 375 >gi|111225218|ref|YP_716012.1| tRNA-specific 2-thiouridylase MnmA [Frankia alni ACN14a] gi|122953781|sp|Q0RDH6|MNMA_FRAAA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|111152750|emb|CAJ64493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Frankia alni ACN14a] Length = 352 Score = 199 bits (505), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 149/371 (40%), Positives = 192/371 (51%), Gaps = 32/371 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV GV L L S + S R G+ CC +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVDAGHDVTGVHLALSRSPE-SDRTGARGCCTLEDARDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D ERF VI F SYAAG TP PCV CN +KF+ +L LG Sbjct: 60 AADVLGIPFYVWDLAERFETEVIDQFVESYAAGRTPNPCVRCNERIKFAAVLDRALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGH+ R + DG R R +D +DQSY L +QL RFPLGD K Sbjct: 120 DAVVTGHHAR----LDPDGTLR----RSVDPAKDQSYVLGTLRPEQLGAARFPLGDSTKA 171 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIV-HLNGQILGRH 256 VR A GL +ADK DS DICF+ G ++ RI + G IV GQ LG H Sbjct: 172 QVRREAAARGLAVADKPDSHDICFISGGDTGGWLRERIG---SRPGPIVDSRTGQTLGEH 228 Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G +T+GQRRGL + G P +V+ + +S V VGP E L++ R+ W Sbjct: 229 DGTFAFTVGQRRGLRLGHPAPDGRPRYVLDISPVTSTVTVGPAEELDIRRLVADRAAWPH 288 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 +G+ C ++R+ V + D + V + G A+GQA V Y D Sbjct: 289 EGV--------VTCQAQVRAHGGVVAAEAEARGDDLVVTLDTPVRGTAAGQAVVLYDGD- 339 Query: 373 NEARVLGGGII 383 RVLGGG I Sbjct: 340 ---RVLGGGHI 347 >gi|329894882|ref|ZP_08270681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma proteobacterium IMCC3088] gi|328922611|gb|EGG29946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma proteobacterium IMCC3088] Length = 361 Score = 199 bits (505), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 132/378 (34%), Positives = 196/378 (51%), Gaps = 27/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 NPK +V+V +SGGVDSSV A L G+DV + ++ ++ ++ C A QD DA Sbjct: 2 NPK-QKVIVGLSGGVDSSVAALCLIEQGFDVEALFMKNWDEDDDTEY---CTAMQDFADA 57 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V + + + ++ + + V F + Y AG TP P + CN+ +KF L L Sbjct: 58 SAVAAALGIVLHGANFAREYWDRVFEYFLAEYRAGRTPNPDILCNKEIKFKAFLDYALNL 117 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R+ L D + + D +DQSYFL Q L FPLGDM Sbjct: 118 GADFIATGHYARTGL----DNAGLTTLQKGADPNKDQSYFLHQVPHQALAKTLFPLGDMH 173 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR+ A+ GL DK DS ICF+ + ++ D + A G IV ++G+ LG H Sbjct: 174 KTEVRERAKAAGLATFDKKDSTGICFIGERRFTDFLSTYLP--AQPGKIVAVSGEELGSH 231 Query: 257 NGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308 G++ +TIGQR+GLG+ + P +VV D +++R+IV SL R+ + + Sbjct: 232 QGLMYHTIGQRQGLGIGGTKDFGDAPWYVVDKDLDNNRLIVAQGNQHPSLFKQRLTVVDP 291 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 W+G D F+C KIR Q P V + V+F++++ + GQ+ VFY Sbjct: 292 FWIGTPPPRD-----FRCSAKIRYRQPDQPCSVSYQGGDLLVEFDQAQRAITPGQSVVFY 346 Query: 369 TSDSNEARVLGGGIISGS 386 D R LGGG+I+G+ Sbjct: 347 DGD----RCLGGGVIAGA 360 >gi|304409068|ref|ZP_07390689.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella baltica OS183] gi|307303071|ref|ZP_07582826.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella baltica BA175] gi|304352889|gb|EFM17286.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella baltica OS183] gi|306913431|gb|EFN43853.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella baltica BA175] Length = 372 Score = 199 bits (505), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 126/374 (33%), Positives = 199/374 (53%), Gaps = 31/374 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 12 KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKDAQAVCD 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 69 KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDADY 128 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 129 IAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKHEV 184 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+EMGL DK DS ICF+ + K+ + + A G+I G+++G H G++ Sbjct: 185 REIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEVIGTHQGLM 242 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ + +P +VV D + +IVG PR L + + +++W Sbjct: 243 YHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPR--LMSTGMTVNQLHW 300 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYT 369 + +DG VK R Q VP + D+ V F++ V GQ+ VFY Sbjct: 301 VD----RTGPIDGCHIAVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQSAVFYD 356 Query: 370 SDSNEARVLGGGII 383 + LGGGII Sbjct: 357 GEV----CLGGGII 366 >gi|315640033|ref|ZP_07895158.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus italicus DSM 15952] gi|315484161|gb|EFU74632.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus italicus DSM 15952] Length = 378 Score = 199 bits (505), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 139/385 (36%), Positives = 209/385 (54%), Gaps = 25/385 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+ + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 7 KDNSNTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKD 63 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 +V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 64 VAKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALD 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY +++ +DG M R +D +DQ+YFL +Q+QL FPLG M Sbjct: 124 LGADYVATGHY--AQVVRDEDGLTH--MLRGVDNNKDQTYFLSQLSQEQLAKTMFPLGGM 179 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A+ L A K DS +CF+ + + + A +G++V L+G++ G+ Sbjct: 180 EKSEVRAIAQRANLATAKKKDSTGVCFIGEKNFKQFLSHYLP--AQKGNMVTLDGEVKGQ 237 Query: 256 HNGIINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 H+G++ YTIGQR+GLG+ G EP FVV D ++ + VG +L + +I Sbjct: 238 HDGLMYYTIGQRQGLGIGGGGKTQEPWFVVGKDLATNTLYVGQGFHHPALYADHLDASDI 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVF 367 ++ + + FKC K R Q VPV V+ D+ V F++ + GQA VF Sbjct: 298 HFTN----QSGQPEEFKCTAKFRYRQQDVPVTVRLLADNRAEVYFDEPVRAITPGQAVVF 353 Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392 Y + LGGG+I + + + V Sbjct: 354 Y----DGMECLGGGLIDRAFQENKV 374 >gi|307326495|ref|ZP_07605690.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces violaceusniger Tu 4113] gi|306887903|gb|EFN18894.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces violaceusniger Tu 4113] Length = 383 Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 148/391 (37%), Positives = 204/391 (52%), Gaps = 34/391 (8%) Query: 17 NPKD---MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQ 71 P+D +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G+ CC + Sbjct: 10 GPRDGRRLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIE 68 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D DARR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 69 DSRDARRAADVIGIPFYVWDLAERFREDVVEDFIAEYEAGRTPNPCLRCNEKIKFAALLD 128 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LG D + TGHY + + DG R + R D+ +DQSY L ++QL FP Sbjct: 129 KALALGFDAVCTGHY--ATIVERADGSRE--LHRASDMAKDQSYVLGVLDERQLAHAMFP 184 Query: 192 LGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 LGD K +R A GL +A K DS DICF+ G + + G A EGDIV + Sbjct: 185 LGDTLTTKGEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLAG-HLGTA-EGDIVDED 242 Query: 250 GQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 G+ LG H G +TIGQRRGL + G+P +V+ + + V VGP E+L+V + Sbjct: 243 GRKLGTHEGAYGFTIGQRRGLRIGHPAPDGKPRYVLDISPVDNTVTVGPVEALDVAALTA 302 Query: 306 REINWLGDGLFEDAVVDG-FKCFVKIRSSQDPV---PVFVQRNDDGVYVDFEKSEVGVAS 361 + W G V G + ++ + V P+ V G+ V F + GVA Sbjct: 303 IKPRWCG----APPVGPGSYTAQLRAHGGETEVTAEPIGVS----GLRVTFAEPVRGVAP 354 Query: 362 GQACVFYTSDSNEARVLGGGIISGSKRSDAV 392 GQA V Y ++ RV+G I+ ++R+ V Sbjct: 355 GQAIVLY----DDTRVVGSATIATTERAQVV 381 >gi|15672819|ref|NP_266993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactococcus lactis subsp. lactis Il1403] gi|12723762|gb|AAK04935.1|AE006317_4 tRNA-methyltransferase [Lactococcus lactis subsp. lactis Il1403] gi|326406382|gb|ADZ63453.1| 5-methylaminomethyl-2-thiouridylate-tRNA methyltransferase [Lactococcus lactis subsp. lactis CV56] Length = 384 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 140/385 (36%), Positives = 197/385 (51%), Gaps = 24/385 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+P RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 12 KSPAQTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 68 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 V D I V +Y ++E+ + + V F + Y AG TP P V CN+ +KF L + Sbjct: 69 VAAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAME 128 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY + R D M R D +DQ+YFL TQ+QL FPLG + Sbjct: 129 LGADYVATGHYAQVRT----DENGIVHMLRGADNNKDQTYFLSQLTQEQLKKTMFPLGHL 184 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + GL A K DS ICF+ + + + A G ++ L+G +G Sbjct: 185 EKPEVRKIAEKAGLATAKKKDSTGICFIGEKNFKKFLGEYLP--AQPGKMMTLDGIEMGN 242 Query: 256 HNGIINYTIGQRRGLGVA------MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 H G++ YTIGQR GLG+ +P FVV D ++ + VG + +Y ++ Sbjct: 243 HAGLMYYTIGQRGGLGIGGQHGQLTSDPWFVVGKDLTTNTLYVG--QGFHHEHLYSTSLD 300 Query: 310 WLGDGLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 D F + + F C K R Q+ V + N D V VDF++ + GQA VF Sbjct: 301 -ASDLSFTREMPETFDLHCTAKFRYRQEDTGVTIHVNGDKVTVDFDEPVRAITPGQAVVF 359 Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392 Y + LGG +I + ++ V Sbjct: 360 YDGE----ECLGGAMIDVAYKAQKV 380 >gi|270308092|ref|YP_003330150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dehalococcoides sp. VS] gi|270153984|gb|ACZ61822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dehalococcoides sp. VS] Length = 357 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 134/363 (36%), Positives = 182/363 (50%), Gaps = 22/363 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++VAMSGGVDSSV A LL GYDV GV+LQL + ++ G+ + + AR V Sbjct: 8 IMVAMSGGVDSSVAAMLLLEQGYDVAGVSLQL---KSNNEPYGNGYNLKLINRAREVAAA 64 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + HYV D + F VI F Y+ G TP PC+ CN VK LL A LA Sbjct: 65 LGIPHYVVDLSDIFSQRVIADFCQQYSQGRTPNPCIRCNYYVKIGALLDKIPDFNAGYLA 124 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R V DG ++ + D ++DQSYFL+ L L FPLG K+ + Sbjct: 125 TGHYAR----VLSDGNGTHLL-KGADEKKDQSYFLYTLPPASLSRLMFPLGKRYKKDIIR 179 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA +M L ++ K +SQD+CF+ G Y + G G I+ G+ILG H G+ Y Sbjct: 180 LAAKMKLPVSQK-ESQDVCFIPDGDYKSFLS-TRMGFT-PGKILDKTGKILGEHQGLPLY 236 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV-V 321 TIGQR+GLG+A E LFV ++ ++ + V + L RI L W E ++ + Sbjct: 237 TIGQRQGLGLASNEKLFVSDMNPEANTITVASHDQLYTSRILLSNFIWR-----ESSISI 291 Query: 322 DGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 D VK+R P V + + D ++ GQA V Y D VLGG Sbjct: 292 DTPGMIVKVRYKAAPAEVKKISQTGDFHLLELASPVWAATPGQAAVIYLGD----MVLGG 347 Query: 381 GII 383 GII Sbjct: 348 GII 350 >gi|15641141|ref|NP_230773.1| tRNA-specific 2-thiouridylase MnmA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587442|ref|ZP_01677211.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae 2740-80] gi|121726243|ref|ZP_01679533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae V52] gi|147673628|ref|YP_001216596.1| tRNA-specific 2-thiouridylase MnmA [Vibrio cholerae O395] gi|153816924|ref|ZP_01969591.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae NCTC 8457] gi|153822021|ref|ZP_01974688.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae B33] gi|227081301|ref|YP_002809852.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae M66-2] gi|14195282|sp|Q9KSX8|MNMA_VIBCH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205828983|sp|A5F2F2|MNMA_VIBC3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|9655600|gb|AAF94287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548362|gb|EAX58426.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae 2740-80] gi|121631189|gb|EAX63562.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae V52] gi|126512511|gb|EAZ75105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae NCTC 8457] gi|126520486|gb|EAZ77709.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae B33] gi|146315511|gb|ABQ20050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae O395] gi|227009189|gb|ACP05401.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae M66-2] gi|227012943|gb|ACP09153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae O395] Length = 372 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 122/375 (32%), Positives = 199/375 (53%), Gaps = 30/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 13 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCD 69 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 70 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 129 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R +G++ + M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 130 IAMGHYVRRTF--PQNGEKPQ-MLRGLDGNKDQSYFLYTLSHEQVARTLFPVGELEKPEV 186 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A K DS ICF+ + K+ D + R A G I G+++G H G++ Sbjct: 187 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 244 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLREINW 310 +T+GQR+GL + + +P +V DK+ R ++ L+ H + +++W Sbjct: 245 YHTLGQRKGLHIGGMKESSEQPWYVA--DKDLKRNVLIAVQGADHPLLKSHGLVAAQLHW 302 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + + +C VK R Q + + +DD + V F++ +V V GQ+ VFY Sbjct: 303 VD----RTPITEPVRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAVFYQ 358 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 359 GEI----CLGGGIIE 369 >gi|229505277|ref|ZP_04394787.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae BX 330286] gi|229511053|ref|ZP_04400532.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae B33] gi|229518173|ref|ZP_04407617.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae RC9] gi|229608296|ref|YP_002878944.1| tRNA-specific 2-thiouridylase MnmA [Vibrio cholerae MJ-1236] gi|254848257|ref|ZP_05237607.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae MO10] gi|255745540|ref|ZP_05419488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholera CIRS 101] gi|262158386|ref|ZP_06029502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae INDRE 91/1] gi|262170249|ref|ZP_06037936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae RC27] gi|229344888|gb|EEO09862.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae RC9] gi|229351018|gb|EEO15959.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae B33] gi|229357500|gb|EEO22417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae BX 330286] gi|229370951|gb|ACQ61374.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae MJ-1236] gi|254843962|gb|EET22376.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae MO10] gi|255736615|gb|EET92012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholera CIRS 101] gi|262021264|gb|EEY39978.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae RC27] gi|262029827|gb|EEY48475.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae INDRE 91/1] Length = 371 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 122/375 (32%), Positives = 199/375 (53%), Gaps = 30/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 12 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCD 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 69 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R +G++ + M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 129 IAMGHYVRRTF--PQNGEKPQ-MLRGLDGNKDQSYFLYTLSHEQVARTLFPVGELEKPEV 185 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A K DS ICF+ + K+ D + R A G I G+++G H G++ Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 243 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLREINW 310 +T+GQR+GL + + +P +V DK+ R ++ L+ H + +++W Sbjct: 244 YHTLGQRKGLHIGGMKESSEQPWYVA--DKDLKRNVLIAVQGADHPLLKSHGLVAAQLHW 301 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + + +C VK R Q + + +DD + V F++ +V V GQ+ VFY Sbjct: 302 VD----RTPITEPVRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAVFYQ 357 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 358 GEI----CLGGGIIE 368 >gi|222099125|ref|YP_002533693.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermotoga neapolitana DSM 4359] gi|254811469|sp|B9KBD1|MNMA_THENN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|221571515|gb|ACM22327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermotoga neapolitana DSM 4359] Length = 358 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 127/369 (34%), Positives = 188/369 (50%), Gaps = 20/369 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR---KASKRKGSCCAGQDVYDAR 77 M+V VA+SGGVDS+V LL ++G++V ++ K +K CC+ D DA Sbjct: 1 MKVGVALSGGVDSAVALYLLLKEGHEVKAFHMKTKEDEFFLKKEIKKKVCCSPSDTADAI 60 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 R+ ++ V + D E FR VI PF G TP PCV CNR VKF + G Sbjct: 61 RIARSLGVEIEIVDVREVFREKVIEPFKRDLLRGLTPNPCVHCNRYVKFGYFMDYVLSQG 120 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D A+GHY R + G GK +++ + +D ++DQSYFL ++ L FP G K Sbjct: 121 FDAFASGHYARVE-FSGKYGK--KVIKKGVDGKKDQSYFLARIEPWRIEKLLFPNGIYTK 177 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRH 256 E +R +A E G+ +A K +SQD+CF+ G + +K + GI L EG ++ G+++G H Sbjct: 178 EEIRRIAEEAGIHVAKKQESQDVCFIPDGSIENFLK--DEGITLSEGKVITEKGEVVGHH 235 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G YT+GQR+GL + GE L+V S+ V+V E + + + W D Sbjct: 236 RGYPLYTVGQRKGLKIEKFGERLYVREKIPESNVVVVSGLEGVFFSGLIAVDPVWHVD-- 293 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + + F+C ++R + P V+ + V V FEK V GQ FY D+ Sbjct: 294 ----LPEEFRCVCRVRKKAEEAPAIVRVKNSEVEVRFEKKIFAVTPGQIAAFYDEDT--- 346 Query: 376 RVLGGGIIS 384 +LGG II Sbjct: 347 -LLGGAIIK 354 >gi|160875703|ref|YP_001555019.1| tRNA-specific 2-thiouridylase MnmA [Shewanella baltica OS195] gi|160861225|gb|ABX49759.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella baltica OS195] gi|315267892|gb|ADT94745.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella baltica OS678] Length = 392 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 126/374 (33%), Positives = 199/374 (53%), Gaps = 31/374 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 32 KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKDAQAVCD 88 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 89 KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDADY 148 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 149 IAMGHYVRRR----DNTDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKHEV 204 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+EMGL DK DS ICF+ + K+ + + A G+I G+++G H G++ Sbjct: 205 REIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEVIGTHQGLM 262 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ + +P +VV D + +IVG PR L + + +++W Sbjct: 263 YHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPR--LMSTGMTVNQLHW 320 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYT 369 + +DG VK R Q VP + D+ V F++ V GQ+ VFY Sbjct: 321 VD----RTGPIDGCHIAVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQSAVFYD 376 Query: 370 SDSNEARVLGGGII 383 + LGGGII Sbjct: 377 GEV----CLGGGII 386 >gi|224826536|ref|ZP_03699637.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lutiella nitroferrum 2002] gi|224601137|gb|EEG07319.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lutiella nitroferrum 2002] Length = 358 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 131/369 (35%), Positives = 184/369 (49%), Gaps = 24/369 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+VV MSGGVDSSV A LLK+ G++VIGV +Q + + C QD DA V D Sbjct: 6 RIVVGMSGGVDSSVTAWLLKQQGHEVIGVFMQNWEDDNDDEY---CSIKQDALDAMSVAD 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + V ++ + +++ V F Y+AG TP P V CN +KF L +LGAD + Sbjct: 63 IVGIDMEVVNFAKEYKDRVFSYFLKEYSAGRTPNPDVLCNAEIKFKAFLDYAMELGADCI 122 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R DGK + + +D +DQSYFL+ Q QL FPLG+++K VR Sbjct: 123 ATGHYARKE---ERDGK--HYLLKAVDHTKDQSYFLYRLNQAQLSKAMFPLGEIRKTEVR 177 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA + GL A K DS ICF+ + + + ++R GD+V G+ +GRH G++ Sbjct: 178 QLAEQAGLPTAAKKDSTGICFIGERPFREFLQRYLP--TQPGDMVTPEGKTVGRHEGLMY 235 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD--G 314 YT+GQR+GL + GEP FV D +R+IV H + L+ +GD Sbjct: 236 YTLGQRKGLNIGGAKDGSGEPWFVAGKDIPGNRLIVVQGHD---HPLLLKNTLEMGDLSW 292 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 ++A + G D D + F + V GQ+ V Y D Sbjct: 293 TLDEAPLPGDYAAKNRYRMADAACSLSPVVDGEANLTFRDKQWAVTPGQSAVLYDGDI-- 350 Query: 375 ARVLGGGII 383 LGGGII Sbjct: 351 --CLGGGII 357 >gi|24374174|ref|NP_718217.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella oneidensis MR-1] gi|30173411|sp|Q8CX40|MNMA_SHEON RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|24348681|gb|AAN55661.1|AE015704_12 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella oneidensis MR-1] Length = 372 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 124/374 (33%), Positives = 204/374 (54%), Gaps = 31/374 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 12 KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLKDAQAVCD 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L L AD Sbjct: 69 KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADDILDADY 128 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R R +DG + M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 129 IAMGHYVRRR--DNEDGTTQ--MLRGVDNNKDQSYFLYTLSHEQVARSLFPVGELEKHEV 184 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A++MGL DK DS ICF+ + K+ + + N A G+I +G+++G H G++ Sbjct: 185 REIAKQMGLITHDKKDSTGICFIGERKFTEFLG--NYLPAQPGNIETADGEVIGTHQGLM 242 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ + +P +VV D + ++VG PR L + + + +++W Sbjct: 243 YHTLGQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPR--LMSNGMLVNQLHW 300 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + ++G + VK R Q +P +D+ + V F++ V GQ+ VFY Sbjct: 301 VD----RKGPINGSQIVVKTRYRQQDIPCTLTYLDDNTLKVVFDEPVAAVTPGQSAVFYD 356 Query: 370 SDSNEARVLGGGII 383 + LGGGII Sbjct: 357 GEV----CLGGGII 366 >gi|289208445|ref|YP_003460511.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thioalkalivibrio sp. K90mix] gi|288944076|gb|ADC71775.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thioalkalivibrio sp. K90mix] Length = 373 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 132/381 (34%), Positives = 193/381 (50%), Gaps = 29/381 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V +SGGVDS+V A+ L GY V G+ ++ + ++ C A D AR V Sbjct: 6 RVIVGLSGGVDSAVAASRLLEAGYRVEGLFMKNWEDDDDAE---YCAAEADFEMAREVAA 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + ++ E +R V F Y AG TP P + CNR +KF L RQLGA + Sbjct: 63 CLEIPLHKANFAEDYRQRVFRHFLHEYEAGRTPNPDILCNREIKFRSFLDHARQLGAQWI 122 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G +C D +DQ+YFL TQ+QL FPLGD+ K+ VR Sbjct: 123 ATGHYARVRHLPGHSE-----LCMAADANKDQTYFLHTLTQEQLRPALFPLGDIPKDQVR 177 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ARE+GL + DS ICF+ + ++ D + + A EG++ GQ++G H G++ Sbjct: 178 ARARELGLPNHARKDSTGICFIGERRFRDFLAQYLR--APEGEMCTPEGQVVGHHQGLMF 235 Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVG--PRESLEVH-RIYLREINWLGD 313 YT+GQR+GLG+ P +VV D S+R+IV PR L + I ++W+ Sbjct: 236 YTLGQRQGLGIGGIDGFPEAPWYVVDKDLGSNRLIVAQDPRHPLLMSPEIETETVHWI-- 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 G ++R Q P ++ D G V V F+ + GQ+ VFY D Sbjct: 294 ---HRPPEPGRPVMARLRHRQPLQPCRLESVDGGRVRVRFDAPQRAATPGQSAVFYNGDV 350 Query: 373 NEARVLGGGIISGSKRSDAVE 393 LGG +I+ ++R+ A E Sbjct: 351 ----CLGGAVIA-TRRTLASE 366 >gi|256028712|ref|ZP_05442546.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Fusobacterium sp. D11] gi|289766621|ref|ZP_06525999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. D11] gi|289718176|gb|EFD82188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. D11] Length = 344 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 118/362 (32%), Positives = 195/362 (53%), Gaps = 21/362 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV+ MSGGVDSSV A LLK GY+VIGVTL + + +D+ DA++VC+ Sbjct: 3 KVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENS----------KDIEDAKKVCN 52 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H V + + F N VI F Y +G+TP PCV C+ +KF L + + A+ + Sbjct: 53 KLEIIHEVVNIRKDFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFDIADKYKAEYV 112 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + + + + ++ + +DQSY L+ + +L L FPL K+ +R Sbjct: 113 ATGHY--TSVEYSEIFSKYLLLKSVHSIIKDQSYMLYRLSPNKLERLIFPLKYYTKQEIR 170 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL+I +K DSQ ICF ++G Y + +K + G+ V +G ILG H G Sbjct: 171 EIALKLGLEIYNKKDSQGICFAKEG-YKEFLKENLKDEIVRGNYVDKDGNILGEHEGYQL 229 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQRRGLG+ + +P+F+ + ++ +++G L +++ L IN+ +E + Sbjct: 230 YTIGQRRGLGINLSKPIFITEIKPQTNEIVLGEFSELFTNKVEL--INYKFSVEYEK--L 285 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + + + R S + +N + +Y + + A GQ VF+ + V+GGG Sbjct: 286 ENLELLARPRFSSTGFFGKLMKNKNKIYFKYNEENAHNAKGQHIVFFY----DGFVVGGG 341 Query: 382 II 383 I Sbjct: 342 EI 343 >gi|281491325|ref|YP_003353305.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactococcus lactis subsp. lactis KF147] gi|14195271|sp|Q9CHA1|MNMA_LACLA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|281375066|gb|ADA64584.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactococcus lactis subsp. lactis KF147] Length = 376 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 140/385 (36%), Positives = 197/385 (51%), Gaps = 24/385 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+P RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 4 KSPAQTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 60 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 V D I V +Y ++E+ + + V F + Y AG TP P V CN+ +KF L + Sbjct: 61 VAAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAME 120 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY + R D M R D +DQ+YFL TQ+QL FPLG + Sbjct: 121 LGADYVATGHYAQVRT----DENGIVHMLRGADNNKDQTYFLSQLTQEQLKKTMFPLGHL 176 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + GL A K DS ICF+ + + + A G ++ L+G +G Sbjct: 177 EKPEVRKIAEKAGLATAKKKDSTGICFIGEKNFKKFLGEYLP--AQPGKMMTLDGIEMGN 234 Query: 256 HNGIINYTIGQRRGLGVA------MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 H G++ YTIGQR GLG+ +P FVV D ++ + VG + +Y ++ Sbjct: 235 HAGLMYYTIGQRGGLGIGGQHGQLTSDPWFVVGKDLTTNTLYVG--QGFHHEHLYSTSLD 292 Query: 310 WLGDGLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 D F + + F C K R Q+ V + N D V VDF++ + GQA VF Sbjct: 293 -ASDLSFTREMPETFDLHCTAKFRYRQEDTGVTIHVNGDKVTVDFDEPVRAITPGQAVVF 351 Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392 Y + LGG +I + ++ V Sbjct: 352 YDGE----ECLGGAMIDVAYKAQKV 372 >gi|205821998|sp|A9L4G9|MNMA_SHEB9 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 372 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 126/374 (33%), Positives = 199/374 (53%), Gaps = 31/374 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 12 KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNEY---CAAAEDLKDAQAVCD 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 69 KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDADY 128 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 129 IAMGHYVRRR----DNTDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKHEV 184 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+EMGL DK DS ICF+ + K+ + + A G+I G+++G H G++ Sbjct: 185 REIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEVIGTHQGLM 242 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ + +P +VV D + +IVG PR L + + +++W Sbjct: 243 YHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPR--LMSTGMTVNQLHW 300 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYT 369 + +DG VK R Q VP + D+ V F++ V GQ+ VFY Sbjct: 301 VD----RTGPIDGCHIAVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQSAVFYD 356 Query: 370 SDSNEARVLGGGII 383 + LGGGII Sbjct: 357 GEV----CLGGGII 366 >gi|253995996|ref|YP_003048060.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylotenera mobilis JLW8] gi|253982675|gb|ACT47533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylotenera mobilis JLW8] Length = 369 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 130/385 (33%), Positives = 204/385 (52%), Gaps = 27/385 (7%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++L+K K ++VV +SGGVDSSV A LLK+ GY+V G+ ++ + + C + Q Sbjct: 1 MNLNKAQKK-KIVVGLSGGVDSSVTALLLKQQGYEVTGLFMKNWEDDDTDEY---CSSKQ 56 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DA V D I + ++ + +++ V F S Y AG TP P + CN +KF L Sbjct: 57 DLIDAVSVADKIGIDIEAVNFSKEYKDRVFANFLSEYQAGRTPNPDILCNAEIKFKAFLD 116 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 +GAD++ATGHY + R GK + + + D +DQSYFL+ Q QL FP Sbjct: 117 HAMGMGADLIATGHYAQVRENPLQPGKFQ--LLKADDGSKDQSYFLYRLNQAQLSKTLFP 174 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNG 250 LG K VR++AR GL A+K DS ICF+ + + + + + + E GD+ G Sbjct: 175 LGQHLKREVREIARSAGLINAEKKDSTGICFIGERPFQEFLSKY---LPREPGDMKTPEG 231 Query: 251 QILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVY--LDKNSSRVIVGPRESLEVHR- 302 +++GRH G++ YT+GQR+GL + + GEP FV ++KN V+ G L ++ Sbjct: 232 KLVGRHEGLMYYTLGQRQGLKIGGSRESNGEPWFVAGKDMEKNELIVVQGHEHPLLLNDG 291 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361 + +++W+ E+ + K R Q P V R + D V + F + + + Sbjct: 292 LKAGQLHWIS----EENPTTNWVYAAKTRYRQPDAPCEVDRISSDEVEIKFGQKQWAITP 347 Query: 362 GQACVFYTSDSNEARVLGGGIISGS 386 GQ+ V Y S+ LGGGII+G+ Sbjct: 348 GQSAVVYESNV----CLGGGIITGA 368 >gi|261210711|ref|ZP_05925003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio sp. RC341] gi|260840196|gb|EEX66776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio sp. RC341] Length = 371 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 123/375 (32%), Positives = 199/375 (53%), Gaps = 30/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 12 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCD 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 +++ + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 69 KLDIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R +G++ + M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 129 IAMGHYVRRTF--PQNGEKPQ-MLRGLDNNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 185 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A K DS ICF+ + K+ D + R A G I G+++G H G++ Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 243 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLREINW 310 +T+GQR+GL + + +P +V DK+ R ++ L+ H + +++W Sbjct: 244 YHTLGQRKGLHIGGMKESSEQPWYVA--DKDLKRNVLIAVQGAEHPLLKSHGLVAAQLHW 301 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + + +C VK R Q + V DD + V F++ +V V GQ+ VFY Sbjct: 302 VD----RTPITEPVRCSVKTRYRQSDIACTVVPVGDDRIKVMFDEPQVAVTPGQSAVFYQ 357 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 358 GEI----CLGGGIIE 368 >gi|33519851|ref|NP_878683.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Blochmannia floridanus] gi|81657434|sp|Q7U353|MNMA_BLOFL RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|33504196|emb|CAD83458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Blochmannia floridanus] Length = 369 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 126/379 (33%), Positives = 206/379 (54%), Gaps = 42/379 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V +SGGVDSSV A LL++ GY V G+ ++ + + K C + +D+ DA +C+ Sbjct: 3 KVIVGISGGVDSSVAAWLLQQQGYLVEGLFMKNWEN---DDEKEYCSSEEDLSDAWSICN 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 T+ + + ++ + + V F +Y +G TP P V CN+ +KF L + LGAD Sbjct: 60 TLKIPLHTVNFAQEYWENVFQVFLQAYQSGFTPNPDVLCNKEIKFKHFLDFALEDLGADF 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + K++ + + +D +DQSYFL+ QQQL FP+G + K +V Sbjct: 120 IATGHYVRCM-----NVKKKITLMKGIDQNKDQSYFLYTLNQQQLKRCLFPIGSLTKLTV 174 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGI 259 R +A+E+ L A+K DS ICF+ + + + IA++ GDI++++G LG H GI Sbjct: 175 RKIAKELNLITANKKDSTGICFIGKRNFRSFLSNY---IAIQPGDIINIHGNKLGLHQGI 231 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV----GPRESLEVHRIYL-REIN 309 YTIGQR+GL + G+P +VV DKN + ++ G + RI++ ++I Sbjct: 232 PFYTIGQRKGLNIGGISNGNGKPWYVV--DKNITHNVLIVAQGINHPCLMSRIFIVQKIF 289 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPV-----PVFVQRNDDGVYVDFEKSEVGVASGQA 364 W+ + + + +C VKIR Q V P+ V D + + ++ +A GQ+ Sbjct: 290 WIKGNILKSPI----QCSVKIRYQQSDVQCQIYPISV----DTLKIILKQPVTAIAPGQS 341 Query: 365 CVFYTSDSNEARVLGGGII 383 VFY + +GGG I Sbjct: 342 AVFYI----KKHCIGGGTI 356 >gi|254459256|ref|ZP_05072678.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacterales bacterium GD 1] gi|207084149|gb|EDZ61439.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacterales bacterium GD 1] Length = 344 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 125/368 (33%), Positives = 199/368 (54%), Gaps = 32/368 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGG+DSSV A LL+++GY+VIGV ++L++ + ++ ++V Sbjct: 4 KVIVGMSGGIDSSVTAYLLQQEGYEVIGVYMKLHDLIENFHE-------DNIASGKKVAR 56 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 ++ + +++ D +F+ V F Y G TP PCV CNRT+KF L ++ GAD L Sbjct: 57 SLGIEYHILDLSSKFKEEVYDYFVGEYLNGNTPNPCVKCNRTIKFGALFDFAKEQGADFL 116 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY ++ DG+ + + D +DQSYFL Q L L FP+ +K + Sbjct: 117 ATGHYAKT------DGE---FIYKAEDDTKDQSYFLAQIKQDVLKHLIFPMNKYRKTEIV 167 Query: 202 DLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 L + + +IA + +SQ+ICFV+ Y D++K+ + I L G + +G +G H G Sbjct: 168 KLGSTLPVIKEIAKRKESQEICFVEN-VYTDIIKK-HTDIDLPGLALDTDGNEVGHHKGY 225 Query: 260 INYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 ++YTIG+RRG V EP +V +D N++ ++V ++ L V ++ + +N LF D Sbjct: 226 MHYTIGKRRGFTVHGAHEPHYVKEIDPNANTIVVCKKDDLGVSKVLIDTLN-----LFID 280 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 F+C VK+R + V D + +K+ GVA+GQ VFY D N +VL Sbjct: 281 K--KEFECTVKLRYRTHKIACKVIIEDSEAMIYLDKNVDGVATGQVAVFY--DGN--KVL 334 Query: 379 GGGIISGS 386 G G I + Sbjct: 335 GSGFIKKT 342 >gi|149908394|ref|ZP_01897057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Moritella sp. PE36] gi|149808557|gb|EDM68492.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Moritella sp. PE36] Length = 379 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 125/375 (33%), Positives = 196/375 (52%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 18 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEDDDNDEY---CAAAEDLADAQAVCD 74 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 75 KLGIELHAINFSAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLQFASEVLAADY 134 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+ R DGK M R +D +DQSYFL+ Q+ FP+G+++K V Sbjct: 135 IAMGHYVSRRQTA--DGKFE--MLRGLDSNKDQSYFLYTLDHVQVSRSLFPVGELEKPEV 190 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A+K DS ICF+ + K+ + + + A G I ++G+ +G H G++ Sbjct: 191 RRIAEEQGLITANKKDSTGICFIGERKFTEFLSKYLP--AQPGKIESVDGEEIGEHQGLM 248 Query: 261 NYTIGQRRGLGVA------MGEPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREIN 309 +T+GQR+GL + EP +VV DK+ R ++ + R++ +++ Sbjct: 249 YHTLGQRKGLHIGGMKNNNNQEPWYVV--DKDMERNVLLVAQGHNHPRLFSTGLMASQLH 306 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368 W+ + + +C VK R Q VP V +D + V F+K E+ V GQ+ VFY Sbjct: 307 WIS----REPLTQPLRCTVKTRYRQTDVPCLVTPIGEDQIEVTFDKPELAVTPGQSAVFY 362 Query: 369 TSDSNEARVLGGGII 383 D LGG II Sbjct: 363 LDDV----CLGGAII 373 >gi|187930035|ref|YP_001900522.1| tRNA-specific 2-thiouridylase MnmA [Ralstonia pickettii 12J] gi|229486417|sp|B2UC85|MNMA_RALPJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|187726925|gb|ACD28090.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia pickettii 12J] Length = 370 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 134/384 (34%), Positives = 193/384 (50%), Gaps = 28/384 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+VV MSGGVDSSV A LLK+ GYDV+G+ ++ + S+ C QD D V D Sbjct: 5 RIVVGMSGGVDSSVTAWLLKQQGYDVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I V ++ +++ V F Y+AG TP P V CN +KF L LGAD + Sbjct: 62 LIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGADTI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG+M K VR Sbjct: 122 ATGHYARVREVDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEMPKTKVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A E+GL A K DS ICF+ + + D + R G I +G+ +G H G+ Sbjct: 177 EIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPIKTPDGKTIGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313 YT+GQR+G+G+ G+ +V D N+ V+ G L H ++ +++W+ Sbjct: 235 YTLGQRKGIGIGGSRDGTGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 A +G K R Q P V R G + + F +++ V GQ+ V Y + Sbjct: 295 ----HAPAEGTHLGAKTRYRQADAPCTVARAAGGALTLTFSEAQWAVTPGQSAVLYDGEV 350 Query: 373 NEARVLGGGIISGSKRSDAVEESL 396 LGGGIIS ++ + VE+++ Sbjct: 351 ----CLGGGIISAAEPA-VVEKAI 369 >gi|17547442|ref|NP_520844.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia solanacearum GMI1000] gi|24638316|sp|Q8XVV4|MNMA_RALSO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|17429745|emb|CAD16430.1| probable trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase protein [Ralstonia solanacearum GMI1000] Length = 370 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 132/384 (34%), Positives = 196/384 (51%), Gaps = 28/384 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ + S+ C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I V ++ +++ V F Y+AG TP P V CN +KF L LGAD + Sbjct: 62 LIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGADTI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R + G R ++ + D +DQSYFL Q QL FPLG+M K VR Sbjct: 122 ATGHYARVR----EAGGRFELL-KAFDHTKDQSYFLHRLNQAQLSRTLFPLGEMPKTRVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A E+GL A K DS ICF+ + + D + R G I +G+ +G+H G+ Sbjct: 177 EIAAEIGLPNARKKDSTGICFIGERPFRDFLNRYLP--TKPGPIRTPDGKTIGQHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YT+GQR+G+G+ G+ +V D ++ + V L H ++ +++W+ Sbjct: 235 YTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVAQGHDHPWLLAHTVHADDLSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDS 372 +G + K R Q P V R D + + F++++ V GQ+ V Y D Sbjct: 295 ----HPPAEGTQLAAKTRYRQADAPCAVTRATGDALTLTFQQAQWAVTPGQSAVLYDGDI 350 Query: 373 NEARVLGGGIISGSKRSDAVEESL 396 LGGGII+ S + ++E+++ Sbjct: 351 ----CLGGGIIA-STEAASLEQAV 369 >gi|88798697|ref|ZP_01114280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Reinekea sp. MED297] gi|88778460|gb|EAR09652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Reinekea sp. MED297] Length = 364 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 132/372 (35%), Positives = 193/372 (51%), Gaps = 26/372 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + +V+V MSGGVDSSV AALL GY V G+ ++ ++ ++ C A +D+ DA+ V Sbjct: 6 ETKVIVGMSGGVDSSVTAALLLEQGYQVEGLFMKNWDEDDGTEY---CTAKEDLADAQAV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + + ++ + + V F Y AG TP P + CNR +KF L LGAD Sbjct: 63 ADRLGIHLHKANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLEYALTLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R+ +GK R + R D +DQ+YFL A +Q FP+G+++K Sbjct: 123 KIATGHYARTDTM---NGKGR--LLRGNDHNKDQTYFLHAVGHEQFEKTLFPVGELEKPQ 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A + L A K DS ICF+ + ++ D +K+ A G IV L G++LG H G+ Sbjct: 178 VRAIAEKYKLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGKIVTLEGEVLGDHQGL 235 Query: 260 INYTIGQRRGLGVA---MGE-PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 + YTIGQR+GLG+ GE P FV + ++ ++V +L + L I W+ Sbjct: 236 MYYTIGQRQGLGIGGTRHGEAPWFVAQKNLATNELVVVQGTDHPALFTTYMSLNNIYWVD 295 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSD 371 D E V C K R Q + RN G Y V F + + + GQ+ VFY D Sbjct: 296 DTGPELPVT--LAC--KHRYRQPDQSCELSRNAQGEYQVTFHEPQRAITPGQSAVFYLGD 351 Query: 372 SNEARVLGGGII 383 LGGG+I Sbjct: 352 V----CLGGGVI 359 >gi|157375020|ref|YP_001473620.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella sediminis HAW-EB3] gi|189040509|sp|A8FUG9|MNMA_SHESH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|157317394|gb|ABV36492.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella sediminis HAW-EB3] Length = 372 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 130/395 (32%), Positives = 203/395 (51%), Gaps = 41/395 (10%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + E T +N + +V+V MSGGVDSSV A LL + GY V G+ ++ + Sbjct: 1 MALIEPTAIN---------NKKVIVGMSGGVDSSVSAYLLLKQGYQVEGLFMKNWEEDDT 51 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 52 DEY---CAAADDLKDAQAVCDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIIC 108 Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L L AD +A GHY+R D + M R D +DQSYFL+ Sbjct: 109 NKEIKFKAFLEFADDILDADYIAMGHYVRRS-----DESGQSQMLRGRDGNKDQSYFLYT 163 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR++A+EMGL DK DS ICF+ + K+ D + Sbjct: 164 LSHEQISRSLFPVGELEKSEVREIAKEMGLVTHDKKDSTGICFIGERKFTDFLSTFLP-- 221 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG- 293 A G+I G+I+G+H G++ +T+GQR+GLG+ + +P +VV + + + ++VG Sbjct: 222 AQPGNIETAEGEIIGKHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKEMDRNVLVVGQ 281 Query: 294 ----PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGV 348 PR L Y +++W+ +DG + VK R Q D DD + Sbjct: 282 GGHHPR--LMSVGFYADQLHWVD----RKGPIDGAQITVKTRYRQRDVACTLTYEGDDRI 335 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 V F++ V GQ+ VFY ++ LGGGII Sbjct: 336 KVIFDEPVAAVTPGQSAVFYDAE----LCLGGGII 366 >gi|167623646|ref|YP_001673940.1| tRNA-specific 2-thiouridylase MnmA [Shewanella halifaxensis HAW-EB4] gi|189040508|sp|B0TQ02|MNMA_SHEHH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|167353668|gb|ABZ76281.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella halifaxensis HAW-EB4] Length = 371 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 130/374 (34%), Positives = 199/374 (53%), Gaps = 32/374 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 12 KVIVGMSGGVDSSVSAYLLMKQGYQVEGLFMKNWEEDDTDEY---CAAADDLKDAQAVCD 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 69 KLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDADY 128 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R R DG + M R +D +DQSYFL+ +Q+ FP+G+++K V Sbjct: 129 IAMGHYVRRRDI---DGTSQ--MLRGIDGNKDQSYFLYTLGHEQVARSLFPVGELEKSEV 183 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+EMGL DK DS ICF+ + K+ D ++ A G+I G+++G H G++ Sbjct: 184 REIAKEMGLITHDKKDSTGICFIGERKFTDFLQTFLP--AQPGNIETSEGEVIGTHQGLM 241 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ + +P +VV D + +IVG PR L + + +++W Sbjct: 242 YHTLGQRKGLGIGGLKNSNEDPWYVVEKDLVRNVLIVGQGGNHPR--LMSNGLIANQLHW 299 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYT 369 + DG VK R Q VP V + DD + V F++ V GQ+ VFY Sbjct: 300 VD----RKGPADGSNITVKTRYRQQDVPCRVTYDSDDILRVIFDEPVAAVTPGQSAVFYD 355 Query: 370 SDSNEARVLGGGII 383 + LGGGII Sbjct: 356 GEI----CLGGGII 365 >gi|167756778|ref|ZP_02428905.1| hypothetical protein CLORAM_02327 [Clostridium ramosum DSM 1402] gi|237734496|ref|ZP_04564977.1| tRNA-specific 2-thiouridylase mnmA [Mollicutes bacterium D7] gi|167702953|gb|EDS17532.1| hypothetical protein CLORAM_02327 [Clostridium ramosum DSM 1402] gi|229382316|gb|EEO32407.1| tRNA-specific 2-thiouridylase mnmA [Coprobacillus sp. D7] Length = 377 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 135/376 (35%), Positives = 202/376 (53%), Gaps = 27/376 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 RVV+ +SGGVDS+V A LLK GYDVIGV ++ ++S+ + G+ C +D Sbjct: 4 RVVLGLSGGVDSAVAAYLLKEQGYDVIGVFMRNWDSQLNNDILGNPTNDNDICPQEEDYN 63 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ V + + + D+ + + + V F Y G TP P + CN+ +KF L + Sbjct: 64 DAKAVAECLGIPIKRVDFIKEYWDHVFTYFLDEYRKGRTPNPDILCNKHIKFKAFLDFAK 123 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 L AD +ATGHY + + Y G D +M + +D +DQ+YFL QQQL + FPLG+ Sbjct: 124 TLNADYIATGHYAQVKHYQGAD----SVMLKGLDNNKDQTYFLCQLNQQQLQNSLFPLGE 179 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQIL 253 + K VR +ARE+ L +ADK DS ICF+ + + + ++ N A G +V + G ++ Sbjct: 180 IDKTEVRRIARELNLPVADKKDSTGICFIGERDFKEFLQ--NYIPAQAGKMVDIETGNVI 237 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVG-PRESLEVHRIYLREIN 309 G H+GI+ YTIGQR+GLG+ G+ FVV DKN + G ++ L + ++N Sbjct: 238 GDHSGIMYYTIGQRKGLGIGGPGDAWFVVGKDYDKNVLYICQGDQKDWLYSTGALITDVN 297 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368 W+ +D C K R Q P+ ++ ++D VY+ F+K V GQA VFY Sbjct: 298 WIA----STKPIDKIACNAKFRYRQPDNPIQLEFIDEDTVYLTFDKPIKAVTPGQAAVFY 353 Query: 369 TSDSNEARVLGGGIIS 384 D LGGG I Sbjct: 354 DGDI----CLGGGTIE 365 >gi|157363709|ref|YP_001470476.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermotoga lettingae TMO] gi|205828979|sp|A8F5H8|MNMA_THELT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|157314313|gb|ABV33412.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermotoga lettingae TMO] Length = 349 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 122/373 (32%), Positives = 200/373 (53%), Gaps = 36/373 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL-----QLYNSRKASKRKGSCCAGQDVYD 75 M++ + +SGGVDS+V LK +GY+++ + + + +R+ + CC+ D D Sbjct: 1 MKIGILLSGGVDSAVALYQLKNEGYEIVAYHMKTMKDEFFLNRQVKHK--ICCSPSDTVD 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ + T V V + E F+ +I + Y G TP PC CNR +KF L+ + + Sbjct: 59 AKLIAKTAGVPLKVVNLHEIFKEKIITYYLQEYTRGRTPNPCYFCNRFIKFGYLMDLMIE 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 G DV+++GHY R DGK + + +D E+DQSYFL + +++L + FP GD Sbjct: 119 DGVDVISSGHYARVV-----DGK----LLKALDKEKDQSYFLASIEKERLKKIVFPNGDK 169 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQG---KYFDVVKRINAGIALE-GDIVHLNGQ 251 K+ +RD+A++ G+ + K++SQD+CF+ G ++F+ GI ++ G I G+ Sbjct: 170 TKDEIRDIAKKAGIHVHSKAESQDLCFIPDGDQKRFFE-----EQGIKIKSGPIFDKYGK 224 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 +G H G+INYTIGQR+ +GV+ GE ++V + + + +IVG + ++ + + + N L Sbjct: 225 KIGEHTGLINYTIGQRK-IGVSAGERVYVTRICADRNALIVGNEKDVQSDKFSVIDFNLL 283 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 D + F+ VK+R + VP V + V V VA GQA VFY D Sbjct: 284 VD------IDKNFEATVKVRKNSTEVPCKVSLENHRVIVKTTMPVFAVAPGQAAVFYRGD 337 Query: 372 SNEARVLGGGIIS 384 V+G GII Sbjct: 338 I----VIGAGIIE 346 >gi|78485443|ref|YP_391368.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thiomicrospira crunogena XCL-2] gi|123555534|sp|Q31GM9|MNMA_THICR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|78363729|gb|ABB41694.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thiomicrospira crunogena XCL-2] Length = 379 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 123/378 (32%), Positives = 200/378 (52%), Gaps = 24/378 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +++V+V +SGGVDSSV A LLK+ GYDV G+ ++ + + + C A +D+ D + Sbjct: 10 NIKVIVGLSGGVDSSVTALLLKQQGYDVEGLFMKNW---EGDDTEDYCPAAEDLKDVLAI 66 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C+ +++ +V ++ + + V F + Y +G TP P + CN+ VKF L LGAD Sbjct: 67 CEKLDIPLHVENFSGEYWDRVFEHFLAEYQSGRTPNPDILCNKEVKFKAFLEHAMTLGAD 126 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + D + + + +D +DQSYFL+ Q QL FP+G+++K Sbjct: 127 YIATGHYAR----ISRDENGQCYLLKGLDNNKDQSYFLYTLQQHQLSKSMFPIGELEKPY 182 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA E L DK DS ICF+ + K+ D +++ A GDIV+ G+++G H G+ Sbjct: 183 VRQLAEEADLITHDKKDSTGICFIGERKFKDFLQQFLP--AQPGDIVNTEGEVIGHHEGL 240 Query: 260 INYTIGQRRGLGVAMGE-----PLFVV--YLDKNSSRVIVGPRESLEVHRIYLREI-NWL 311 + +T+GQR+GLG+ G P F L+ N + G L H + +W+ Sbjct: 241 MYHTLGQRKGLGIGGGFGDSGLPWFSADKNLETNQLIAVQGSDHPLLNHAFLTADTCDWV 300 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 A+ K V+ R + P + ++N + + V F++ + + GQ+ VFY + Sbjct: 301 SGHC--PALKQALKAKVRYRQPEQPCQILSEKNGE-IIVQFDEEQTAITPGQSVVFYEGE 357 Query: 372 SNEARVLGGGIISGSKRS 389 + LGG II+G S Sbjct: 358 T----CLGGAIITGRYHS 371 >gi|258651678|ref|YP_003200834.1| tRNA-specific 2-thiouridylase MnmA [Nakamurella multipartita DSM 44233] gi|258554903|gb|ACV77845.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Nakamurella multipartita DSM 44233] Length = 368 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 135/367 (36%), Positives = 194/367 (52%), Gaps = 25/367 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AAL G++V GV + L + + R GS CC +D +DARR Sbjct: 1 MRVLAAMSGGVDSAVAAALAVEAGHEVTGVHMALSRT-PGTLRTGSRGCCTVEDAFDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD + + YV+D+ E F + V+ F S YAAG TP PC+ CN +KF+ LL LG Sbjct: 60 VCDLLGIPFYVWDFSEDFLDDVVADFLSEYAAGRTPNPCLRCNEKIKFAALLDRAIALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGHY +RL G + R +DL +DQSY L T QL FPLG++ K Sbjct: 120 DAVCTGHY--ARLIDG-------ALYRSVDLAKDQSYVLAVLTPDQLAHSMFPLGELTKP 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQG-KYFDVVKRINAGIALEGDIV-HLNGQILGRH 256 VR A+ G +A K DS DICF+ G + +V ++ A G +V G+ + H Sbjct: 171 QVRAQAQARGFAVAAKPDSYDICFIPDGDTHGYLVDKLG---ARPGAVVDATTGEQIAEH 227 Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G YTIGQR+GLG+ A G P +V+ ++ + V VGP L+V + + + G Sbjct: 228 DGFFAYTIGQRKGLGLSRPAADGRPRYVLGIEPTTRTVTVGPASGLDVRLVVADRVVFPG 287 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 G D + + ++R+ V D + + +++ GVA GQ V Y + Sbjct: 288 -GRRPDFPI---RVQAQLRAHGGTVGGSADLVDGTLRLSLDQAARGVAPGQTMVLYGGAT 343 Query: 373 NEARVLG 379 +A G Sbjct: 344 PDAASAG 350 >gi|329957309|ref|ZP_08297829.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides clarus YIT 12056] gi|328523022|gb|EGF50125.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides clarus YIT 12056] Length = 388 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 131/398 (32%), Positives = 202/398 (50%), Gaps = 49/398 (12%) Query: 2 VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61 V +A +N +++K K RV+V MSGG+DS+ +L+ GY++IG+T+ ++ Sbjct: 22 VFLQAKTMNIREMNKIEK--RVLVGMSGGIDSTATCLMLQEQGYEIIGLTMWVW------ 73 Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 G + +AR++ ++ + H+V D E FRN ++ F Y G TP PCV CN Sbjct: 74 --------GDEPLEARQLARSMGIEHHVADEREAFRNVIVRNFIDEYRQGRTPNPCVMCN 125 Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQS 174 KF +L +ATGHY R ++Y+ GDD K +DQS Sbjct: 126 PLFKFRIFTEWADKLNCRYIATGHYTRLEELNGKIYIVAGDDEK------------KDQS 173 Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVK 233 YFL+ Q L FPLG K VRD R+ G + A++ +S ++CF+ +G Y D ++ Sbjct: 174 YFLWKLGQDVLRRCLFPLGAYTKLQVRDYLRDKGYTLKAEEGESMEVCFI-KGDYRDFLR 232 Query: 234 RINAGIALE---GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRV 290 + I E G V+ G LG H G YTIGQR+GL +A+G+P +V+ ++ + V Sbjct: 233 EHSPEIDDEVGPGWFVNSEGVKLGEHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTV 292 Query: 291 IVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VY 349 ++G E L+ + + N + +G V+ V+IR PVP V+R +DG + Sbjct: 293 MLGDAEQLKAEYMLAEQDNLIDEG----EVLGSSGLTVRIRYRSKPVPCSVKRLEDGRLL 348 Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387 V FE +A GQ+ VFY RV GG I+ + Sbjct: 349 VHFEAEASAIAPGQSAVFYIGK----RVAGGSFIASQR 382 >gi|292488015|ref|YP_003530892.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erwinia amylovora CFBP1430] gi|292899233|ref|YP_003538602.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erwinia amylovora ATCC 49946] gi|291199081|emb|CBJ46192.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erwinia amylovora ATCC 49946] gi|291553439|emb|CBA20484.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erwinia amylovora CFBP1430] Length = 369 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 125/375 (33%), Positives = 203/375 (54%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ G+ V G+ ++ + + C A +D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGFQVEGLFMKNWEEEDGEE---YCTAAEDLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIYLHTINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + DGK R + R +D +DQSYFL+ + QQ+ FP+G++ K V Sbjct: 124 IATGHYVRRQ---DVDGKSR--LLRGLDGNKDQSYFLYTLSHQQIAQSLFPVGELAKPEV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ + + R A G I+ ++G +G+H G++ Sbjct: 179 RRIAEQLELVTAKKKDSTGICFIGERKFTEFLARYLP--AQPGAIISVDGVNVGQHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ A +P +VV D ++ ++V PR L + ++++W Sbjct: 237 YHTLGQRKGLGIGGRKEANEDPWYVVDKDVTNNLLVVAQGHDHPR--LMSQGLTAQQLHW 294 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYT 369 + + + +C VK R Q+ +P V D + + V F+ V GQ+ VFY Sbjct: 295 VDRNVLSAPL----RCAVKTRYRQEDIPCTVIPLDAERIEVRFDYPVAAVTPGQSAVFYL 350 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 351 DEV----CLGGGIIE 361 >gi|257471315|ref|ZP_05635314.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] Length = 392 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 123/376 (32%), Positives = 204/376 (54%), Gaps = 42/376 (11%) Query: 25 VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84 VAMSGGVDSSV A +LK+ Y V G+ ++ + + ++G C + +D+ DA +C +N Sbjct: 35 VAMSGGVDSSVCAWILKKQNYQVEGLFMK---NWEEDDQEGYCSSTKDLLDAENICKKLN 91 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLAT 143 + + ++ + V F Y G TP P + CN+ +KF+ L+ + ++L AD +AT Sbjct: 92 IYLHKMNFSSEYWEYVFENFLKEYKKGNTPNPDILCNKEIKFNMFLNYSIQELKADYIAT 151 Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 GHY R + G + ++ + +D +DQSYFL+ QL + FP+G +KK VR++ Sbjct: 152 GHYARIKKING-----KYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLKKNKVRNI 206 Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-----EGDIVHLNGQILGRHNG 258 A+++ L IA K DS ICF+ K++ ++L +GDIV ++G+++G+H+G Sbjct: 207 AKKIDLKIAKKKDSTGICFIGP-------KKLKNFLSLYISEKKGDIVTISGRVIGKHSG 259 Query: 259 IINYTIGQRRGLGVA--MGE---PLFVVYLDKNSSR-VIVGPRESLEVHRIYL----REI 308 + YTIGQR+GLG+ GE P +VV +KN + +++ + S H + + + I Sbjct: 260 VFYYTIGQRQGLGIGGIKGEYNIPWYVV--EKNIEKNILIVAQGSYNKHLMSIGLIAKNI 317 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVF 367 NW+ D + C K R Q + ++ N+ + + F+ V GQ+ VF Sbjct: 318 NWIN----YDQLSFPLSCMAKTRYRQKDITCKIEYINNHHIKILFDFPVAAVTPGQSVVF 373 Query: 368 YTSDSNEARVLGGGII 383 Y SD +GGGII Sbjct: 374 YVSDI----CIGGGII 385 >gi|113969944|ref|YP_733737.1| tRNA-specific 2-thiouridylase MnmA [Shewanella sp. MR-4] gi|123029751|sp|Q0HJT7|MNMA_SHESM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|113884628|gb|ABI38680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella sp. MR-4] Length = 372 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 123/374 (32%), Positives = 201/374 (53%), Gaps = 31/374 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 12 KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLKDAQAVCD 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L L AD Sbjct: 69 KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLDFADDILDADY 128 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 129 IAMGHYVRRR----DNADGTTQMLRGVDNNKDQSYFLYTLSHEQVARSLFPVGELEKHEV 184 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A++MGL DK DS ICF+ + K+ + + N A G+I G+++G+H G++ Sbjct: 185 REIAKKMGLITHDKKDSTGICFIGERKFTEFLG--NYLPAQPGNIETAEGEVIGKHQGLM 242 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ + +P +VV D + ++VG PR L + + + +++W Sbjct: 243 YHTLGQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPR--LMSNGMLVNQLHW 300 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + +G + VK R Q +P +D+ + V F++ V GQ+ VFY Sbjct: 301 VD----RKGPAEGSQIVVKTRYRQQDIPCTLTYLDDNTLKVVFDEPVAAVTPGQSAVFYD 356 Query: 370 SDSNEARVLGGGII 383 + LGGGII Sbjct: 357 GEV----CLGGGII 366 >gi|330998316|ref|ZP_08322141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paraprevotella xylaniphila YIT 11841] gi|329568705|gb|EGG50506.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paraprevotella xylaniphila YIT 11841] Length = 378 Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 131/393 (33%), Positives = 210/393 (53%), Gaps = 55/393 (13%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKGSCCAGQD----VYDA 76 +V+V MSGG+DSS V +L+ +GY+V+GVT+++++ +R+ + AGQ+ + DA Sbjct: 7 KVLVGMSGGIDSSAVCLMLQDEGYEVVGVTMRVWDLARQFTD------AGQEYPDFIQDA 60 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + + + HYV D F++ V+ F Y AG TP PCV CN KF L+ +L Sbjct: 61 RALAARLGIVHYVADERTAFKDIVVRDFVDEYLAGRTPNPCVMCNPAFKFRVLVEWADKL 120 Query: 137 GADVLATGHYIRSR-------LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 G D +ATGHY+R + LY G DGK +DQSYFL+ Q L Sbjct: 121 GCDYIATGHYVRVKEEDGHYALYCGVDGK------------KDQSYFLWRLGQDVLSRCI 168 Query: 190 FPLGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGI---ALEGDI 245 FPLG M+KE VR G ++ +S +S +ICF+ + Y D ++ + EG Sbjct: 169 FPLGAMRKEDVRGYLARKGFEMKARSGESMEICFIDK-DYRDFLREQVPDLDRCVGEGKF 227 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 V + G+++G H G +T+GQR+GLG+A+G+P +V+ L+ + V++G + L+ + + Sbjct: 228 VDVQGRVIGTHCGFPYFTVGQRKGLGIALGKPAYVLRLNARKNTVMLGDADDLDASHMLV 287 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR----------NDDGVYVDFEKS 355 + DG ++D + V+IR P+P V+R +++ V F++ Sbjct: 288 SGMRMPEDGTWDDGSLS-----VRIRYRSRPIPCTVRRVKNLFPEEGGSEELGLVRFKEK 342 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388 V GQ+ VFY D +++GG I GS+R Sbjct: 343 ASAVTPGQSAVFYVGD----KMVGGAYI-GSQR 370 >gi|153214224|ref|ZP_01949259.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae 1587] gi|153802718|ref|ZP_01957304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae MZO-3] gi|153828671|ref|ZP_01981338.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae 623-39] gi|254225518|ref|ZP_04919128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae V51] gi|297578730|ref|ZP_06940658.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae RC385] gi|124115473|gb|EAY34293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae 1587] gi|124121758|gb|EAY40501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae MZO-3] gi|125621988|gb|EAZ50312.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae V51] gi|148875824|gb|EDL73959.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae 623-39] gi|297536324|gb|EFH75157.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae RC385] Length = 372 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 122/375 (32%), Positives = 199/375 (53%), Gaps = 30/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 13 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCD 69 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 70 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 129 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R +G++ + M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 130 IAMGHYVRRTF--PQNGEKPQ-MLRGLDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 186 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A K DS ICF+ + K+ D + R A G I G+++G H G++ Sbjct: 187 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 244 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLREINW 310 +T+GQR+GL + + +P +V DK+ R ++ L+ H + +++W Sbjct: 245 YHTLGQRKGLHIGGMKESSEQPWYVA--DKDLKRNVLIAVQGADHPLLKSHGLVAAQLHW 302 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + + +C VK R Q + + +DD + V F++ +V V GQ+ VFY Sbjct: 303 VD----RTPITEPVRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAVFYQ 358 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 359 GEI----CLGGGIIE 369 >gi|319790619|ref|YP_004152252.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermovibrio ammonificans HB-1] gi|317115121|gb|ADU97611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermovibrio ammonificans HB-1] Length = 357 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 123/365 (33%), Positives = 190/365 (52%), Gaps = 30/365 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV++ SGGVDS A LL G++V V +L D RR + Sbjct: 16 RVLLGFSGGVDSFYAAHLLLEQGFNVYPVYFKL-------------LPDADTTKPRRSAE 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +N+ V D E F+ AVI F + Y G TP PC CNR +K +L + R+L + Sbjct: 63 LLNLKLTVVDLTEEFKKAVIDYFIAYYRKGLTPNPCAVCNREIKLKELYKLARKLKIPYI 122 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R V G R+++ R ++ ++QSYFL Q+ +L PLG++ K V Sbjct: 123 ATGHYARVE-KVESFG--RKLIKRGVEPGKEQSYFLALVEQRVFENLILPLGNLTKREVI 179 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 + A+++G + +SQD+CF+++ Y D +++ G G++LG+H G+I Sbjct: 180 EKAKKLGFPF--EGESQDVCFIKEKSYADFLRKFIK--PRPGPFKLTTGEVLGKHKGLIY 235 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YT+GQRRGLG++ PL VV L + VIVGP+E++E I + ++NW + ++ + Sbjct: 236 YTVGQRRGLGISYKHPLHVVELRPEENAVIVGPKEAVEKDEITVWKVNW---HVPQERLT 292 Query: 322 DGFKCFVKIRSSQDPVPV-FVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLG 379 D ++R +PVPV + +G+Y V A GQ C FY++D +LG Sbjct: 293 D-LPLLAQVRYRSEPVPVESLHYFKNGIYRVKLAAKVSAPAPGQVCAFYSNDL----LLG 347 Query: 380 GGIIS 384 GG I+ Sbjct: 348 GGEIT 352 >gi|257066076|ref|YP_003152332.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Anaerococcus prevotii DSM 20548] gi|256797956|gb|ACV28611.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Anaerococcus prevotii DSM 20548] Length = 372 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 132/361 (36%), Positives = 201/361 (55%), Gaps = 20/361 (5%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K KD +VVV +SGGVDSSV A LLK +GYDV+G+ ++ ++ + G C A D D Sbjct: 2 KEKKDTKVVVGVSGGVDSSVAALLLKEEGYDVVGIFMKNWDD---TDENGVCTAEVDYED 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A VC+ I + +Y ++E+ + + V F Y G TP P + CN+ +KF L + Sbjct: 59 AVAVCNQIGIPYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAKS 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY R D +M R +D +DQ+YFL +Q+Q+ D+ FP+G++ Sbjct: 119 LGADYVATGHYARV-----DRSGDETVMLRGLDSNKDQTYFLSQLSQEQIKDVLFPVGEL 173 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR++A + L ADK DS ICF+ + + + + N A GDIV +G +LG+ Sbjct: 174 QKSEVREIAHKYKLATADKKDSTGICFIGERDFNEFLS--NYLPAQAGDIVDTDGNVLGK 231 Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWL 311 H+G++ +TIGQRRGLG+ GE FV D + +IV ++ L +++Y E + Sbjct: 232 HDGLMFHTIGQRRGLGIGGEGEAWFVCGKDLKKNELIVCQGKNNPLLFSNKLYASEFSTF 291 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 E + F C K R Q + V+ +DG V V +++++ V GQA VFY Sbjct: 292 T----EKKIPKEFDCTAKFRYRQADIKAHVKVLEDGKVEVTYDRTK-AVTPGQAAVFYQG 346 Query: 371 D 371 + Sbjct: 347 E 347 >gi|239994884|ref|ZP_04715408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alteromonas macleodii ATCC 27126] Length = 369 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 202/379 (53%), Gaps = 32/379 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A +D+ DA+ V D Sbjct: 11 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNDE---YCAAAEDLKDAQAVAD 67 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 68 KLGIELHTINFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLEFAAEDLGADY 127 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R DGK + M R +D +DQSYFL+ ++ + FP+GD++K V Sbjct: 128 IATGHYVRRREV---DGKWQ--MLRGLDNNKDQSYFLYTLGEEHVAKTLFPVGDIEKPLV 182 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL DK DS ICF+ + K+ D + R A G I G+ +G+H G++ Sbjct: 183 RKIAEEQGLITHDKKDSTGICFIGERKFKDFLARYLP--AQPGVIETAEGEEIGQHEGLM 240 Query: 261 NYTIGQRRGL---GVAM--GEPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREINW 310 +T+GQR+GL G+A +P +VV DK+ +R ++ + + R+Y ++++W Sbjct: 241 YHTLGQRKGLHIGGLAKYGDDPWYVV--DKDVARNVLIVGQGADHPRLYSKGLVAKQLHW 298 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + + + VK R Q +P DD + V F++ + V GQ+ VFY+ Sbjct: 299 VD----RKTITEPVRAVVKTRYRQADIPCTITPTQDDTIEVIFDEPQKAVTPGQSAVFYS 354 Query: 370 SDSNEARVLGGGIISGSKR 388 + LGGGII R Sbjct: 355 DEV----CLGGGIIESYIR 369 >gi|219681627|ref|YP_002468013.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219624470|gb|ACL30625.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 368 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 123/376 (32%), Positives = 204/376 (54%), Gaps = 42/376 (11%) Query: 25 VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84 VAMSGGVDSSV A +LK+ Y V G+ ++ + + ++G C + +D+ DA +C +N Sbjct: 11 VAMSGGVDSSVCAWILKKQNYQVEGLFMK---NWEEDDQEGYCSSTKDLLDAENICKKLN 67 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLAT 143 + + ++ + V F Y G TP P + CN+ +KF+ L+ + ++L AD +AT Sbjct: 68 IYLHKMNFSSEYWEYVFENFLKEYKKGNTPNPDILCNKEIKFNMFLNYSIQELKADYIAT 127 Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 GHY R + G + ++ + +D +DQSYFL+ QL + FP+G +KK VR++ Sbjct: 128 GHYARIKKING-----KYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLKKNKVRNI 182 Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-----EGDIVHLNGQILGRHNG 258 A+++ L IA K DS ICF+ K++ ++L +GDIV ++G+++G+H+G Sbjct: 183 AKKIDLKIAKKKDSTGICFIGP-------KKLKNFLSLYISEKKGDIVTISGRVIGKHSG 235 Query: 259 IINYTIGQRRGLGVA--MGE---PLFVVYLDKNSSR-VIVGPRESLEVHRIYL----REI 308 + YTIGQR+GLG+ GE P +VV +KN + +++ + S H + + + I Sbjct: 236 VFYYTIGQRQGLGIGGIKGEYNIPWYVV--EKNIEKNILIVAQGSYNKHLMSIGLIAKNI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVF 367 NW+ D + C K R Q + ++ N+ + + F+ V GQ+ VF Sbjct: 294 NWIN----YDQLSFPLSCMAKTRYRQKDITCKIEYINNHHIKILFDFPVAAVTPGQSVVF 349 Query: 368 YTSDSNEARVLGGGII 383 Y SD +GGGII Sbjct: 350 YVSDI----CIGGGII 361 >gi|262274515|ref|ZP_06052326.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Grimontia hollisae CIP 101886] gi|262221078|gb|EEY72392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Grimontia hollisae CIP 101886] Length = 370 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 125/377 (33%), Positives = 201/377 (53%), Gaps = 31/377 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNDEY---CSAAEDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 65 KLEIPLHTINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R R + G++ + M R +D +DQSYFL+ + Q+ FP+GD++K V Sbjct: 125 IAMGHYVR-RTFPTKTGEKAQ-MLRGLDSNKDQSYFLYTLSHDQVARSLFPVGDLEKPEV 182 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A K DS ICF+ + K+ D + + A G I ++G+ +G H G++ Sbjct: 183 RRIAEEQGLVTAKKKDSTGICFIGERKFTDFLSKYLP--AQPGIIETVDGKKIGEHQGLM 240 Query: 261 NYTIGQRRGL-------GVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR-----EI 308 +T+GQR+GL G P +VV DK+ R ++ + + R++ + ++ Sbjct: 241 YHTLGQRKGLHIGGQKGGNGNEAPWYVV--DKDVERNVLIVAQGHDHPRLFSKGLIAAQL 298 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVF 367 +W+ + + KC VK R Q + ++ D D + V F++ + V GQ+ VF Sbjct: 299 HWVD----RKTMTEPLKCTVKTRYRQQDISCTIEPIDGDQIKVIFDEPQAAVTPGQSAVF 354 Query: 368 YTSDSNEARVLGGGIIS 384 Y+ D LGGGII Sbjct: 355 YSGDV----CLGGGIIE 367 >gi|229515510|ref|ZP_04404969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae TMA 21] gi|229520442|ref|ZP_04409867.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae TM 11079-80] gi|229525739|ref|ZP_04415144.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae bv. albensis VL426] gi|229529783|ref|ZP_04419173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae 12129(1)] gi|229333557|gb|EEN99043.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae 12129(1)] gi|229339320|gb|EEO04337.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae bv. albensis VL426] gi|229342540|gb|EEO07533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae TM 11079-80] gi|229347279|gb|EEO12239.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae TMA 21] gi|327483833|gb|AEA78240.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Vibrio cholerae LMA3894-4] Length = 371 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 122/375 (32%), Positives = 199/375 (53%), Gaps = 30/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 12 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCD 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 69 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R +G++ + M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 129 IAMGHYVRRTF--PQNGEKPQ-MLRGLDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 185 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A K DS ICF+ + K+ D + R A G I G+++G H G++ Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 243 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLREINW 310 +T+GQR+GL + + +P +V DK+ R ++ L+ H + +++W Sbjct: 244 YHTLGQRKGLHIGGMKESSEQPWYVA--DKDLKRNVLIAVQGADHPLLKSHGLVAAQLHW 301 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + + +C VK R Q + + +DD + V F++ +V V GQ+ VFY Sbjct: 302 VD----RTPITEPVRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAVFYQ 357 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 358 GEI----CLGGGIIE 368 >gi|224536253|ref|ZP_03676792.1| hypothetical protein BACCELL_01120 [Bacteroides cellulosilyticus DSM 14838] gi|224522139|gb|EEF91244.1| hypothetical protein BACCELL_01120 [Bacteroides cellulosilyticus DSM 14838] Length = 359 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 127/384 (33%), Positives = 195/384 (50%), Gaps = 49/384 (12%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N D RV+V MSGG+DS+ +LK GY+++G+T+ ++ G + +A Sbjct: 2 NSPDKRVLVGMSGGIDSTATCLMLKEQGYEIVGLTMWVW--------------GDEPVEA 47 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R++ ++ + H+V D E FR ++ F Y G TP PCV CN T KF L +L Sbjct: 48 RQLAGSMGIEHHVADEREAFRKVIVQNFIDEYCQGRTPNPCVMCNPTFKFRILTEWADKL 107 Query: 137 GADVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 G ++TGHY R ++Y+ GDD K +DQSYFL+ Q L Sbjct: 108 GCAFISTGHYSRLEEKNGKIYIVAGDDDK------------KDQSYFLWRLGQDVLRRCI 155 Query: 190 FPLGDMKKESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVK----RINAGIALEGD 244 FPLG K VR+ RE G + A++ +S ++CF+ +G Y D ++ I++ I G Sbjct: 156 FPLGTYTKLQVREYLREKGYQLKAEEGESMEVCFI-KGDYRDFLREHSPEIDSAIG-PGW 213 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 V G LG H G YTIGQR+GL +A+G+P +V+ ++ + V++G E L + Sbjct: 214 FVSSEGVKLGEHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLRTEYML 273 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQ 363 + N + + F A V+IR P+P V+R +DG ++V F +A GQ Sbjct: 274 TEQDNLIDEQEFFSAS----DLTVRIRYRSKPIPCTVKRLEDGRLFVHFLSEASAIAPGQ 329 Query: 364 ACVFYTSDSNEARVLGGGIISGSK 387 + VFY RV+GG I+ + Sbjct: 330 SAVFYIG----RRVVGGSFIASQR 349 >gi|330954571|gb|EGH54831.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae Cit 7] Length = 357 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 122/364 (33%), Positives = 190/364 (52%), Gaps = 26/364 (7%) Query: 29 GGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHY 88 GGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VCD I + + Sbjct: 1 GGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCDKIGIKLH 57 Query: 89 VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIR 148 ++ + + V F Y AG TP P + CNR +KF L LGAD++ATGHY+R Sbjct: 58 TANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLIATGHYVR 117 Query: 149 SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMG 208 R D R + + +D +DQSYFL A +Q+ FP+G+++K VR +A + G Sbjct: 118 RR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVRAIAEKHG 172 Query: 209 LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRR 268 L A K DS ICF+ + ++ D +++ A G+I G+++GRH+G++ +TIGQR+ Sbjct: 173 LATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMYHTIGQRQ 230 Query: 269 GLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAV 320 GLG+ A +P +V+ D +++ +IVG L + EI W+ + Sbjct: 231 GLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN----PIDL 286 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 K K+R Q P +++ DG F+ + V GQ+ VFY + LGG Sbjct: 287 SSPRKLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI----CLGG 342 Query: 381 GIIS 384 G+I Sbjct: 343 GVIE 346 >gi|163751230|ref|ZP_02158458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella benthica KT99] gi|161328944|gb|EDQ00018.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella benthica KT99] Length = 376 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 126/378 (33%), Positives = 205/378 (54%), Gaps = 36/378 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 13 KVIVGMSGGVDSSVSAYLLLKQGYRVEGLFMKNWEEDDTDE---YCAAADDLKDAQAVCD 69 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 70 KLGIKLHTVNFAAEYWDKVFEYFLAEYKAGRTPNPDIICNKEIKFKAFLEFADEILDADY 129 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R + G+ R M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 130 IAMGHYVRR---CDETGQSR--MLRGVDGNKDQSYFLYTLSHEQIARSLFPVGELEKSEV 184 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+EMGL DK DS ICF+ + K+ D ++ A G+I G+++G+H G++ Sbjct: 185 REIAKEMGLITHDKKDSTGICFIGERKFTDFLRTFLP--AQPGNIETAEGEVIGKHQGLM 242 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ + +P +VV + + + ++VG PR L Y +++W Sbjct: 243 YHTLGQRKGLGIGGMKNSNDDPWYVVDKEMDRNVLVVGQGGTHPR--LMSMGFYADQLHW 300 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP--VFVQRNDDG---VYVDFEKSEVGVASGQAC 365 + ++ + VK R Q V +F++ ND G + V F++ V GQ+ Sbjct: 301 VD----RKGPINEARITVKTRYRQRDVACTLFLENNDKGEDTIRVLFDEPVAAVTPGQSA 356 Query: 366 VFYTSDSNEARVLGGGII 383 VFY+ + LGGGII Sbjct: 357 VFYSDE----LCLGGGII 370 >gi|302537071|ref|ZP_07289413.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces sp. C] gi|302445966|gb|EFL17782.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces sp. C] Length = 379 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 139/377 (36%), Positives = 195/377 (51%), Gaps = 27/377 (7%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAG 70 +L + + +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G+ CC Sbjct: 4 NLPRTARPLRVLAAMSGGVDSAVAAARAVEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 62 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 +D DARR D I + Y +D ERFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 63 EDSRDARRAADVIGIPFYCWDLAERFREDVVEDFIAEYEAGRTPNPCLRCNEKIKFAALL 122 Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 LG D + TGHY + + DG R + R D+ +DQSY L ++QL F Sbjct: 123 DKALALGFDAVCTGHY--ATIVENADGSRE--LHRASDMAKDQSYVLGVLDEKQLAHALF 178 Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVH 247 PLGD K+ +R A GL +A K DS DICF+ G + KR+ EGDIV Sbjct: 179 PLGDTITTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLAKRLGKA---EGDIVD 235 Query: 248 -LNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHR 302 G+ +G H+G +TIGQR+GL + G+P +V+ + ++ V VGP E+L+V Sbjct: 236 GATGEKVGTHDGAYGFTIGQRKGLRIGHPAPDGKPRYVLDISPVNNTVTVGPVEALDVTA 295 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362 + W G ++R+ VF + D + V F + GVA G Sbjct: 296 LTAIRPRWCGSTPAAPGTYT-----AQLRAHGGETEVFAEVVDGELRVTFTEPVRGVAPG 350 Query: 363 QACVFYTSDSNEARVLG 379 QA V Y ++ RV+G Sbjct: 351 QAIVLY----DDTRVVG 363 >gi|268589250|ref|ZP_06123471.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Providencia rettgeri DSM 1131] gi|291315435|gb|EFE55888.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Providencia rettgeri DSM 1131] Length = 366 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 128/373 (34%), Positives = 205/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + ++ C A D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDDTEY---CSAAADLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIELHTINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R DGK + + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 124 IATGHYVRRR---DIDGKSQ--LLRGLDGNKDQSYFLYTLSHEQVAKSLFPVGELEKPEV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+GL A K DS ICF+ + K+ D + R A G IV ++G+ +G+H G++ Sbjct: 179 RRIAEEIGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVTVDGETIGQHEGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ EP +VV D +N+ ++ E + + L ++++W+ Sbjct: 237 YHTLGQRKGLGIGGTKEGSEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVD 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 + + +C VK R Q +P + +DD + V F+ V GQ+ VFY + Sbjct: 297 ----RKTMTEPLRCVVKTRYRQADIPCTITPLSDDRIEVAFDYPVAAVTPGQSAVFYIDE 352 Query: 372 SNEARVLGGGIIS 384 LGGGII Sbjct: 353 V----CLGGGIIE 361 >gi|167765362|ref|ZP_02437475.1| hypothetical protein BACSTE_03750 [Bacteroides stercoris ATCC 43183] gi|167696990|gb|EDS13569.1| hypothetical protein BACSTE_03750 [Bacteroides stercoris ATCC 43183] Length = 361 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 123/378 (32%), Positives = 194/378 (51%), Gaps = 33/378 (8%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 + N + RV+V MSGG+DS+ +L+ GY+++G+T+ ++ + A Sbjct: 6 NMNKSEKRVLVGMSGGIDSTATCLMLREQGYEIVGLTMWVWGNEPA-------------- 51 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 +AR + D++ + H+V D E FR ++ F Y G TP PCV CN KF L Sbjct: 52 EARNLADSMGIEHHVADEREAFRQIIVQNFIDEYRQGRTPNPCVMCNPLFKFRILTEWAD 111 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 +L +ATGHY R ++ R+ + D ++DQSYFL+ Q L FPLG Sbjct: 112 KLNCRYIATGHYTRL-----EEQNRKIYIVAGDDDKKDQSYFLWRLGQDVLRRCLFPLGT 166 Query: 195 MKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNG 250 K VRD R+ G A++ +S ++CF+ +G Y D ++ + I E G V+ G Sbjct: 167 YTKMQVRDYLRDKGYAPKAEEGESMEVCFI-KGDYRDFLREHSPEIDNEVGPGWFVNSEG 225 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 LG H G YTIGQR+GL +A+G+P +V+ ++ + V++G E L+ + + N Sbjct: 226 VKLGEHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKAEYMLAEQDNL 285 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + +G V + V+IR P+P V+R +DG + V FE +A GQ+ VFY Sbjct: 286 IDEG----EVFGSGELTVRIRYRSKPIPCSVKRLEDGRLLVHFETEASAIAPGQSAVFYI 341 Query: 370 SDSNEARVLGGGIISGSK 387 RV+GG I+ + Sbjct: 342 G----KRVVGGSFIASQR 355 >gi|71281561|ref|YP_269601.1| tRNA-specific 2-thiouridylase MnmA [Colwellia psychrerythraea 34H] gi|123632113|sp|Q480B8|MNMA_COLP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71147301|gb|AAZ27774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Colwellia psychrerythraea 34H] Length = 375 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 131/383 (34%), Positives = 197/383 (51%), Gaps = 35/383 (9%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K P+ +V+V MSGGVDSSV A LLK GY V G+ ++ + + C A QD+ D Sbjct: 8 KAPEQTKVIVGMSGGVDSSVSAYLLKEQGYQVEGLFMKNWEEDDTDEY---CAASQDLED 64 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-R 134 A+ +CD +++ + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 65 AQAICDKLDIKLHTINFATEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFACE 124 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD +ATGHY++ L D+ + M R +D +DQSYFL+ + QL FP+G Sbjct: 125 DLGADYIATGHYVQRELR--DNSWK---MIRGLDNNKDQSYFLYTLDEAQLAHTLFPVGH 179 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K VR +A + GL +K DS ICF+ + K+ D + + A G I G +G Sbjct: 180 IEKPEVRAIAEKAGLITHNKKDSTGICFIGERKFKDFLGQYLP--AQPGIIESAEGVAVG 237 Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIY 304 H+G++ +T+GQR+GL + A EP +VV D + +IVG PR L + Sbjct: 238 HHDGLMYHTLGQRKGLRIGGLADAGEEPWYVVEKDLLRNVLIVGQGHNHPR--LFSKGLI 295 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV----YVDFEKSEVGVA 360 +++W+ A+ +C VK R Q+ V V D +DF + + V Sbjct: 296 ANQLHWVD----RKALTSSIQCTVKTRYRQEDVSCTVTPITDSATEEYQIDFTEQQSSVT 351 Query: 361 SGQACVFYTSDSNEARVLGGGII 383 GQ+ VFY D LGGGII Sbjct: 352 PGQSVVFYKDDV----CLGGGII 370 >gi|227111563|ref|ZP_03825219.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227327064|ref|ZP_03831088.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 368 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 130/376 (34%), Positives = 201/376 (53%), Gaps = 33/376 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + ++ C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYHVEGLFMKNWEEDDDTEY---CSAATDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R DGK R + R MD +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 125 IATGHYVRRHDV---DGKSR--LLRGMDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259 R +A E+ L A K DS ICF+ + K+ D + R A G I+ + + + +G+H G+ Sbjct: 180 RKIAEELELATAKKKDSTGICFIGERKFTDFLARYLP--AQPGPILSVDDNKPMGQHQGL 237 Query: 260 INYTIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREIN 309 + +T+GQR+GLG+ GE P +VV DK+ + I+ + E R+ ++++ Sbjct: 238 MYHTLGQRKGLGIGGVKDGGEDPWYVV--DKDVANNILYVAQGHEHPRLMSYGLIAQQLH 295 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368 W+ + +C VK R Q +P V DD + V F++ V GQ+ VFY Sbjct: 296 WVD----RQPLTAELRCTVKTRYRQADIPCTVTPLGDDRITVRFDEPVAAVTPGQSAVFY 351 Query: 369 TSDSNEARVLGGGIIS 384 D LGGGII Sbjct: 352 LDDV----CLGGGIIE 363 >gi|187730842|ref|YP_001879941.1| tRNA-specific 2-thiouridylase MnmA [Shigella boydii CDC 3083-94] gi|205816914|sp|B2TZ86|MNMA_SHIB3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|187427834|gb|ACD07108.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shigella boydii CDC 3083-94] Length = 368 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 132/373 (35%), Positives = 205/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + N V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIELHTVNFAAEYWNNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G++ Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ EP +VV D +N+ V+ E + + L ++++W+ Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVD 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 F + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY--- 349 Query: 372 SNEARVLGGGIIS 384 N LGGGII Sbjct: 350 -NGEVCLGGGIIE 361 >gi|262372981|ref|ZP_06066260.1| tRNA methyl transferase [Acinetobacter junii SH205] gi|262313006|gb|EEY94091.1| tRNA methyl transferase [Acinetobacter junii SH205] Length = 377 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 122/374 (32%), Positives = 204/374 (54%), Gaps = 23/374 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ V D Sbjct: 4 RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTALEDLADAQAVAD 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F + YAAG TP P + CN+ +KF L LGAD + Sbjct: 61 KIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGADFI 120 Query: 142 ATGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY R + + G+ + R +D +DQ+YFL A +++ FP+G+++K V Sbjct: 121 ATGHYARRGVSTQNSRGETYAPLLRGVDNNKDQTYFLHAVHGREINKTLFPVGEIEKPEV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + ++ D +K+ A G IV NG+ +G H+G++ Sbjct: 181 RRIAEQLDLATAKKKDSTGICFIGERRFTDFLKQYLPAQA--GKIVLDNGKEVGEHHGLM 238 Query: 261 NYTIGQR-----RGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312 YT+GQR G+ A FV++ D ++R+++G ++ +++ I+W+ Sbjct: 239 YYTLGQRGGIGIGGMKGAQEGAWFVLHKDIANNRLVIGQGHEHPLMQSKQLWSEAIDWVA 298 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN---DDGVYVDFEKSEVGVASGQACVFYT 369 ++ GF+C K R Q + R+ ++G+ V+F++ + V GQ+ VFY+ Sbjct: 299 GE--QEIPTTGFRCTAKTRYRQPDQACTIYRDEHTENGIRVEFDEPQRAVTPGQSVVFYS 356 Query: 370 SDSNEARVLGGGII 383 + LGGG+I Sbjct: 357 GEV----CLGGGVI 366 >gi|73855169|gb|AAZ87876.1| conserved hypothetical protein [Shigella sonnei Ss046] Length = 383 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 134/394 (34%), Positives = 212/394 (53%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 61 EEY---CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L + LGAD +ATGHY+R R V DGK R + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + + R G Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPGQ 232 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVG 293 G I+ ++G +G H G++ +T+GQR+GLG+ EP +VV D +N+ V+ Sbjct: 233 P--GKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQ 290 Query: 294 PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYV 350 E + + L ++++W+ F + +C VK R Q +P V+ +DD + V Sbjct: 291 GHEHPRLMSVGLIAQQLHWVDREPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY N LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFY----NGEVCLGGGIIE 376 >gi|311085999|gb|ADP66081.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086574|gb|ADP66655.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087155|gb|ADP67235.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087689|gb|ADP67768.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 392 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 123/376 (32%), Positives = 204/376 (54%), Gaps = 42/376 (11%) Query: 25 VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84 VAMSGGVDSSV A +LK+ Y V G+ ++ + + ++G C + +D+ DA +C +N Sbjct: 35 VAMSGGVDSSVCAWILKKQNYQVEGLFMK---NWEEDDQEGYCSSTKDLLDAENICKKLN 91 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLAT 143 + + ++ + V F Y G TP P + CN+ +KF+ L+ + ++L AD +AT Sbjct: 92 IYLHKMNFSSEYWEYVFENFLKEYKKGNTPNPDILCNKEIKFNMFLNYSIQELKADYIAT 151 Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 GHY R + G + ++ + +D +DQSYFL+ QL + FP+G +KK VR++ Sbjct: 152 GHYARIKKING-----KYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLKKNKVRNI 206 Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-----EGDIVHLNGQILGRHNG 258 A+++ L IA K DS ICF+ K++ ++L +GDIV ++G+++G+H+G Sbjct: 207 AKKIDLKIAKKKDSTGICFIGP-------KKLKNFLSLYISEKKGDIVTISGRVIGKHSG 259 Query: 259 IINYTIGQRRGLGVA--MGE---PLFVVYLDKNSSR-VIVGPRESLEVHRIYL----REI 308 + YTIGQR+GLG+ GE P +VV +KN + +++ + S H + + + I Sbjct: 260 VFYYTIGQRQGLGIGGIKGEYNIPWYVV--EKNIEKNILIVAQGSYNKHLMSIGLIAKNI 317 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVF 367 NW+ D + C K R Q + ++ N+ + + F+ V GQ+ VF Sbjct: 318 NWIN----YDQLSFPLSCMAKTRYRQKDIICKIEYINNHHIKILFDFPVAAVTPGQSVVF 373 Query: 368 YTSDSNEARVLGGGII 383 Y SD +GGGII Sbjct: 374 YVSDI----CIGGGII 385 >gi|262402513|ref|ZP_06079074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio sp. RC586] gi|262351295|gb|EEZ00428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio sp. RC586] Length = 371 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 122/375 (32%), Positives = 198/375 (52%), Gaps = 30/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 12 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCD 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 69 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R +G++ + M R +D +DQSYFL+ + +Q+ FP+GD++K V Sbjct: 129 IAMGHYVRRTF--PQNGEKPQ-MLRGLDNNKDQSYFLYTLSHEQVTRSLFPVGDLEKPEV 185 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A K DS ICF+ + K+ D + R A G I G+++G H G++ Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 243 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLREINW 310 +T+GQR+GL + + +P +V DK+ R ++ L+ H + +++W Sbjct: 244 YHTLGQRKGLHIGGMKESNEQPWYVA--DKDLKRNVLIAVQGADHPLLKSHGLVAAQLHW 301 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + + +C VK R Q + + ++D + V F+ +V V GQ+ VFY Sbjct: 302 VD----RTPITEPLRCSVKTRYRQSDIACTIIPLSNDRIKVMFDDPQVAVTPGQSAVFYQ 357 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 358 GEI----CLGGGIIE 368 >gi|119775197|ref|YP_927937.1| tRNA-specific 2-thiouridylase MnmA [Shewanella amazonensis SB2B] gi|205816912|sp|A1S7B1|MNMA_SHEAM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|119767697|gb|ABM00268.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella amazonensis SB2B] Length = 377 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 129/374 (34%), Positives = 198/374 (52%), Gaps = 32/374 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 18 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDTDEY---CAAAEDLKDAQAVCD 74 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L L AD Sbjct: 75 KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADDILDADY 134 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R R DGK M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 135 IAMGHYVRRR---DTDGKTE--MLRGIDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 189 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL DK DS ICF+ + K+ D + A G+I G I+GRH G++ Sbjct: 190 RRIAEEQGLITHDKKDSTGICFIGERKFKDFLATYLP--AQPGNIETPEGDIIGRHEGLM 247 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREINW 310 +T+GQR+GLG+ + +P +VV DK+ +R ++ + E R+ + +++W Sbjct: 248 YHTLGQRKGLGIGGMKNSNDDPWYVV--DKDMARNVLVVAQGHEHPRLMSKGMRVNQLHW 305 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYT 369 + DG VK R Q +P V+ D+ + V F++ V GQ+ VFY Sbjct: 306 VD----RTGPADGATISVKTRYRQQDIPCTVKIIDEQTIEVLFDEPVAAVTPGQSAVFYD 361 Query: 370 SDSNEARVLGGGII 383 + LGGGII Sbjct: 362 GEV----CLGGGII 371 >gi|219682184|ref|YP_002468568.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621917|gb|ACL30073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] Length = 368 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 123/376 (32%), Positives = 204/376 (54%), Gaps = 42/376 (11%) Query: 25 VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84 VAMSGGVDSSV A +LK+ Y V G+ ++ + + ++G C + +D+ DA +C +N Sbjct: 11 VAMSGGVDSSVCAWILKKQNYQVEGLFMK---NWEEDDQEGYCSSTKDLLDAENICKKLN 67 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLAT 143 + + ++ + V F Y G TP P + CN+ +KF+ L+ + ++L AD +AT Sbjct: 68 IYLHKMNFSSEYWEYVFENFLKEYKKGNTPNPDILCNKEIKFNMFLNYSIQELKADYIAT 127 Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 GHY R + G + ++ + +D +DQSYFL+ QL + FP+G +KK VR++ Sbjct: 128 GHYARIKKING-----KYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLKKNKVRNI 182 Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-----EGDIVHLNGQILGRHNG 258 A+++ L IA K DS ICF+ K++ ++L +GDIV ++G+++G+H+G Sbjct: 183 AKKIDLKIAKKKDSTGICFIGP-------KKLKNFLSLYISEKKGDIVTISGRVIGKHSG 235 Query: 259 IINYTIGQRRGLGVA--MGE---PLFVVYLDKNSSR-VIVGPRESLEVHRIYL----REI 308 + YTIGQR+GLG+ GE P +VV +KN + +++ + S H + + + I Sbjct: 236 VFYYTIGQRQGLGIGGIKGEYNIPWYVV--EKNIEKNILIVAQGSYNKHLMSIGLIAKNI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVF 367 NW+ D + C K R Q + ++ N+ + + F+ V GQ+ VF Sbjct: 294 NWIN----YDQLSFPLSCMAKTRYRQKDIICKIEYINNHHIKILFDFPVAAVTPGQSVVF 349 Query: 368 YTSDSNEARVLGGGII 383 Y SD +GGGII Sbjct: 350 YVSDI----CIGGGII 361 >gi|205822400|sp|Q030C8|MNMA_LACLS RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 376 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 140/385 (36%), Positives = 197/385 (51%), Gaps = 24/385 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+P RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 4 KSPAQTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 60 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 V D I V +Y ++E+ + + V F + Y AG TP P V CN+ +KF L + Sbjct: 61 VAAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAME 120 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY + R +DG M R D +DQ+YFL TQ+QL FPLG + Sbjct: 121 LGADYVATGHYAQVR--TDEDGTVH--MLRGADNNKDQTYFLSQLTQEQLKKTMFPLGHL 176 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + GL A K DS ICF+ + + + A G ++ L+G +G Sbjct: 177 EKPEVRRIAEKAGLATAKKKDSTGICFIGEKNFKKFLGEYLP--AQPGKMMTLDGVEMGN 234 Query: 256 HNGIINYTIGQRRGLGVA------MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 H G++ YTIGQR GLG+ +P FVV D ++ + VG + +Y ++ Sbjct: 235 HAGLMYYTIGQRGGLGIGGQHGQLTSDPWFVVGKDLTTNTLYVG--QGFHHEHLYSTSLD 292 Query: 310 WLGDGLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 D F + + F C K R Q+ V + D V VDF++ + GQA VF Sbjct: 293 -ASDLSFTREMPETFDLHCTAKFRYRQEDTGVTIHVKADKVTVDFDEPVRAITPGQAVVF 351 Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392 Y + LGG +I + + V Sbjct: 352 YDGE----ECLGGAMIDVAYKEQKV 372 >gi|317052362|ref|YP_004113478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfurispirillum indicum S5] gi|316947446|gb|ADU66922.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfurispirillum indicum S5] Length = 345 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 123/369 (33%), Positives = 189/369 (51%), Gaps = 38/369 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+VAMSGGVDSS+ LL GY V G ++L+ + + + Q++ RV Sbjct: 7 KVLVAMSGGVDSSMTTKLLLEQGYPVEGCYMKLHGNEQMHE--------QNIARVERVAR 58 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 N+ +V D ++ F +V PF Y+ G+TP PC CNR +KF L R+L L Sbjct: 59 YFNIPWHVLDRQDLFHQSVYQPFIDIYSQGQTPNPCTFCNRLIKFGTLFEFARELDCHHL 118 Query: 142 ATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 ATGHY++ +Y GDD +DQSYFLF + + L FPLG +K Sbjct: 119 ATGHYVKCDGQYIYQGDDPG------------KDQSYFLFNIEPRIIPHLLFPLGSWRKS 166 Query: 199 SVRDLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 V+ +A ++ L +A + +S +ICFV+ Y DV+ R + + G ++ +G ++G H Sbjct: 167 DVKAMAADIPLLASLATQKESSEICFVED-SYIDVL-REHLQVDQPGKVLDTSGNVVGSH 224 Query: 257 NGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G ++YT+GQR+G V + L+V + ++ ++VG RE + + R +R++N L Sbjct: 225 RGYMHYTVGQRKGFDVPLSHTALYVKQILPKTNELVVGTREEINLQRFAVRDLN-----L 279 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374 F F C VK+R P V G ++ E+ E +A GQA FY Sbjct: 280 FLPDPGQEFTCEVKVRYRNPKAPARVLLGAGGSATIELERPEYAIAPGQAAAFYEG---- 335 Query: 375 ARVLGGGII 383 R+LGGG I Sbjct: 336 TRLLGGGYI 344 >gi|261415477|ref|YP_003249160.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371933|gb|ACX74678.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 366 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 126/364 (34%), Positives = 196/364 (53%), Gaps = 31/364 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKG-SCCAG----QDVYD 75 RV V +SGGVDS++ A LLK+ GY+V+G+T+ ++ S K +G C G +++ + Sbjct: 6 RVAVGLSGGVDSALSAYLLKKQGYEVVGMTMATWDDSVKMPAVEGREGCYGPSEDKNIEE 65 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ V + + + HYV E ++ V+ F + Y AG TP PCV CN+++KF L R+ Sbjct: 66 AKLVAERLGIPHYVVPVAEDYKREVLDYFRAEYRAGRTPNPCVRCNQSIKFGALQHAARK 125 Query: 136 LGADV--LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LG D ATGHY R D + +D +DQ+YFL + +QL + FPLG Sbjct: 126 LGIDFDYFATGHYARLDFKNPD----VPFLYEALDEHKDQTYFLSRLSAEQLSTVIFPLG 181 Query: 194 DMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKY---FDVVKRINAGIALEGDIVHLN 249 M+K V+ LA+E+G D A K +SQD F++ G Y FD + GD + +N Sbjct: 182 GMQKADVKALAKEIGWDDFATKRESQD--FIECGDYSVLFDESDNV------PGDFIDVN 233 Query: 250 GQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 G++LG+H GI++YTIGQR+GL + EPL+VV +D + ++VI+GPR +L + ++ Sbjct: 234 GKVLGKHKGIVHYTIGQRKGLNIGGQAEPLYVVAIDAHHNQVILGPRSALSCTEVSAVDL 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG---VYVDFEKSEVGVASGQAC 365 N + + E + + IR + D + V F++ + A GQ Sbjct: 294 NLM---VSETSPLLKEPLTAHIRLGHKGATARITALDTAAGTISVKFDEPQFASAPGQVL 350 Query: 366 VFYT 369 V Y Sbjct: 351 VLYA 354 >gi|91793184|ref|YP_562835.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella denitrificans OS217] gi|91715186|gb|ABE55112.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella denitrificans OS217] Length = 377 Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 127/373 (34%), Positives = 197/373 (52%), Gaps = 29/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY+V G+ ++ + + C A D+ DA+ VCD Sbjct: 17 KVIVGMSGGVDSSVSAYLLMQQGYEVEGLFMKNWEEDDTDEY---CAAADDLKDAQAVCD 73 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L L AD Sbjct: 74 KLGIKMHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADDILDADY 133 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 134 IAMGHYVRRR----DNSDGSVQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKHEV 189 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 RD+A++MGL DK DS ICF+ + K+ D + A GDI G+++G+H G++ Sbjct: 190 RDIAKQMGLITHDKKDSTGICFIGERKFTDFLATYLP--AQPGDIETPEGEVIGKHQGLM 247 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +T+GQR+GLG+ + +P +VV D + +IV G L + + +++W+ Sbjct: 248 YHTLGQRKGLGIGGLKDSNEDPWYVVEKDLLRNVLIVAQGGNHPRLMSQGMTVNQLHWVD 307 Query: 313 -DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 G D+ + VK R Q VP + +D + V F+ V GQ+ VFY Sbjct: 308 RKGPATDS-----QLVVKTRYRQTDVPCRISFDDPQRITVIFDSPVAAVTPGQSAVFYDG 362 Query: 371 DSNEARVLGGGII 383 D LGGGII Sbjct: 363 DV----CLGGGII 371 >gi|117920194|ref|YP_869386.1| tRNA-specific 2-thiouridylase MnmA [Shewanella sp. ANA-3] gi|166235083|sp|A0KW11|MNMA_SHESA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|117612526|gb|ABK47980.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella sp. ANA-3] Length = 372 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 124/374 (33%), Positives = 200/374 (53%), Gaps = 31/374 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 12 KVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNDEY---CAAAEDLKDAQAVCD 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L L AD Sbjct: 69 KLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLDFADDILDADY 128 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 129 IAMGHYVRRR----DNADGTTQMLRGVDNNKDQSYFLYTLSHEQVARSLFPVGELEKHEV 184 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A++MGL DK DS ICF+ + K+ + + N A G+I G+I+G+H G++ Sbjct: 185 REIAKKMGLITHDKKDSTGICFIGERKFTEFLG--NYLPAQPGNIETAEGEIIGKHQGLM 242 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 T+GQR+GLG+ + +P +VV D + ++VG PR L + + + +++W Sbjct: 243 YQTLGQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPR--LMSNGMLVNQLHW 300 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + +G + VK R Q +P +D+ + V F++ V GQ+ VFY Sbjct: 301 VD----RKGPAEGSQIVVKTRYRQQDIPCTLTYLDDNTLKVVFDEPVAAVTPGQSAVFYD 356 Query: 370 SDSNEARVLGGGII 383 + LGGGII Sbjct: 357 GEV----CLGGGII 366 >gi|116511650|ref|YP_808866.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactococcus lactis subsp. cremoris SK11] gi|116107304|gb|ABJ72444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactococcus lactis subsp. cremoris SK11] Length = 384 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 140/385 (36%), Positives = 197/385 (51%), Gaps = 24/385 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+P RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 12 KSPAQTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 68 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 V D I V +Y ++E+ + + V F + Y AG TP P V CN+ +KF L + Sbjct: 69 VAAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAME 128 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY + R +DG M R D +DQ+YFL TQ+QL FPLG + Sbjct: 129 LGADYVATGHYAQVR--TDEDGTVH--MLRGADNNKDQTYFLSQLTQEQLKKTMFPLGHL 184 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + GL A K DS ICF+ + + + A G ++ L+G +G Sbjct: 185 EKPEVRRIAEKAGLATAKKKDSTGICFIGEKNFKKFLGEYLP--AQPGKMMTLDGVEMGN 242 Query: 256 HNGIINYTIGQRRGLGVA------MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 H G++ YTIGQR GLG+ +P FVV D ++ + VG + +Y ++ Sbjct: 243 HAGLMYYTIGQRGGLGIGGQHGQLTSDPWFVVGKDLTTNTLYVG--QGFHHEHLYSTSLD 300 Query: 310 WLGDGLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 D F + + F C K R Q+ V + D V VDF++ + GQA VF Sbjct: 301 -ASDLSFTREMPETFDLHCTAKFRYRQEDTGVTIHVKADKVTVDFDEPVRAITPGQAVVF 359 Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392 Y + LGG +I + + V Sbjct: 360 YDGE----ECLGGAMIDVAYKEQKV 380 >gi|57234425|ref|YP_181511.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dehalococcoides ethenogenes 195] gi|123618735|sp|Q3Z8D8|MNMA_DEHE1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|57224873|gb|AAW39930.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dehalococcoides ethenogenes 195] Length = 357 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 131/362 (36%), Positives = 183/362 (50%), Gaps = 20/362 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++VAMSGGVDSSV A LL GYDV GV+LQL + ++ G+ + + AR V Sbjct: 8 IMVAMSGGVDSSVAAMLLLEQGYDVAGVSLQL---KSNNEPYGNGYNLKLINRAREVAAA 64 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + HYV D + F VI F Y+ G TP PC+ CN VK LL A LA Sbjct: 65 LGIPHYVVDLSDIFSQRVIADFCQQYSQGRTPNPCIRCNYYVKIGALLEKIPDFNAGYLA 124 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY +R+ ++G + + D ++DQSYFL+ + L L FPLG K+ + Sbjct: 125 TGHY--ARVLSDENGTH---LLKGADEKKDQSYFLYTLPPESLSRLIFPLGKRYKKDIIR 179 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA +M L ++ K +SQD+CF+ G Y + G G I+ G+ILG H G+ Y Sbjct: 180 LADKMKLPVSQK-ESQDVCFIPDGDYKSFLA-TRMGFT-PGKILDKTGKILGEHQGLPLY 236 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A E LFV ++ ++ ++V + L RI L W + +D Sbjct: 237 TIGQRQGLGLASNEKLFVSDMNPEANTIMVASHDQLYTSRILLSNFIWRESRI----PLD 292 Query: 323 GFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 VK+R P V + + D ++ GQA V Y D VLGGG Sbjct: 293 TPGMIVKVRYKAAPAEVKKISQTGDFYLLELASPVWAATPGQAAVIYLGD----MVLGGG 348 Query: 382 II 383 II Sbjct: 349 II 350 >gi|302325766|gb|ADL24967.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 390 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 126/364 (34%), Positives = 196/364 (53%), Gaps = 31/364 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKG-SCCAG----QDVYD 75 RV V +SGGVDS++ A LLK+ GY+V+G+T+ ++ S K +G C G +++ + Sbjct: 30 RVAVGLSGGVDSALSAYLLKKQGYEVVGMTMATWDDSVKMPAVEGREGCYGPSEDKNIEE 89 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ V + + + HYV E ++ V+ F + Y AG TP PCV CN+++KF L R+ Sbjct: 90 AKLVAERLGIPHYVVPVAEDYKREVLDYFRAEYRAGRTPNPCVRCNQSIKFGALQHAARK 149 Query: 136 LGADV--LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LG D ATGHY R D + +D +DQ+YFL + +QL + FPLG Sbjct: 150 LGIDFDYFATGHYARLDFKNPD----VPFLYEALDEHKDQTYFLSRLSAEQLSTVIFPLG 205 Query: 194 DMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKY---FDVVKRINAGIALEGDIVHLN 249 M+K V+ LA+E+G D A K +SQD F++ G Y FD + GD + +N Sbjct: 206 GMQKADVKALAKEIGWDDFATKRESQD--FIECGDYSVLFDESDNV------PGDFIDVN 257 Query: 250 GQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 G++LG+H GI++YTIGQR+GL + EPL+VV +D + ++VI+GPR +L + ++ Sbjct: 258 GKVLGKHKGIVHYTIGQRKGLNIGGQAEPLYVVAIDAHHNQVILGPRSALSCTEVSAVDL 317 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG---VYVDFEKSEVGVASGQAC 365 N + + E + + IR + D + V F++ + A GQ Sbjct: 318 NLM---VSETSPLLKEPLTAHIRLGHKGATARITALDTAAGTISVKFDEPQFASAPGQVL 374 Query: 366 VFYT 369 V Y Sbjct: 375 VLYA 378 >gi|205822016|sp|Q12N64|MNMA_SHEDO RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 372 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 127/373 (34%), Positives = 197/373 (52%), Gaps = 29/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY+V G+ ++ + + C A D+ DA+ VCD Sbjct: 12 KVIVGMSGGVDSSVSAYLLMQQGYEVEGLFMKNWEEDDTDEY---CAAADDLKDAQAVCD 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L L AD Sbjct: 69 KLGIKMHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADDILDADY 128 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 129 IAMGHYVRRR----DNSDGSVQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKHEV 184 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 RD+A++MGL DK DS ICF+ + K+ D + A GDI G+++G+H G++ Sbjct: 185 RDIAKQMGLITHDKKDSTGICFIGERKFTDFLATYLP--AQPGDIETPEGEVIGKHQGLM 242 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +T+GQR+GLG+ + +P +VV D + +IV G L + + +++W+ Sbjct: 243 YHTLGQRKGLGIGGLKDSNEDPWYVVEKDLLRNVLIVAQGGNHPRLMSQGMTVNQLHWVD 302 Query: 313 -DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 G D+ + VK R Q VP + +D + V F+ V GQ+ VFY Sbjct: 303 RKGPATDS-----QLVVKTRYRQTDVPCRISFDDPQRITVIFDSPVAAVTPGQSAVFYDG 357 Query: 371 DSNEARVLGGGII 383 D LGGGII Sbjct: 358 DV----CLGGGII 366 >gi|25298369|pir||C84960 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) [imported] - Buchnera sp. (strain APS) gi|10038936|dbj|BAB12971.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 392 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 123/376 (32%), Positives = 204/376 (54%), Gaps = 42/376 (11%) Query: 25 VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84 VAMSGGVDSSV A +LK+ Y V G+ ++ + + ++G C + +D+ DA +C +N Sbjct: 35 VAMSGGVDSSVCAWILKKQNYQVEGLFMK---NWEEDDQEGYCSSTKDLLDAENICKKLN 91 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLAT 143 + + ++ + V F Y G TP P + CN+ +KF+ L+ + ++L AD +AT Sbjct: 92 IYLHKMNFSSEYWEYVFENFLKEYKKGNTPNPDILCNKEIKFNMFLNYSIQELKADYIAT 151 Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 GHY R + G + ++ + +D +DQSYFL+ QL + FP+G +KK VR++ Sbjct: 152 GHYARIKKING-----KYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLKKNKVRNI 206 Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-----EGDIVHLNGQILGRHNG 258 A+++ L IA K DS ICF+ K++ ++L +GDIV ++G+++G+H+G Sbjct: 207 AKKIDLKIAKKKDSTGICFIGP-------KKLKNFLSLYISEKKGDIVTISGRVIGKHSG 259 Query: 259 IINYTIGQRRGLGVA--MGE---PLFVVYLDKNSSR-VIVGPRESLEVHRIYL----REI 308 + YTIGQR+GLG+ GE P +VV +KN + +++ + S H + + + I Sbjct: 260 VFYYTIGQRQGLGIGGIKGEYNIPWYVV--EKNIEKNILIVAQGSYNKHLMSIGLIAKNI 317 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVF 367 NW+ D + C K R Q + ++ N+ + + F+ V GQ+ VF Sbjct: 318 NWIN----YDQLSFPLSCMAKTRYRQKDIICKIEYINNHHIKILFDCPVAAVTPGQSVVF 373 Query: 368 YTSDSNEARVLGGGII 383 Y SD +GGGII Sbjct: 374 YVSDI----CIGGGII 385 >gi|32266455|ref|NP_860487.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter hepaticus ATCC 51449] gi|81657428|sp|Q7U320|MNMA_HELHP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|32262506|gb|AAP77553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter hepaticus ATCC 51449] Length = 345 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 127/373 (34%), Positives = 200/373 (53%), Gaps = 34/373 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA--RR 78 M+V + MSGGVDSS A LL GY+VIG+ L+L++ K D+Y A + Sbjct: 1 MKVALLMSGGVDSSYCAHLLSSQGYEVIGIYLKLHDKNKK----------HDIYIANCEQ 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V +++ V D E F+ +V F SSY G+TP PC CN +KF L +LG Sbjct: 51 VAAHLHIDFQVLDLREEFKKSVYDTFVSSYKEGKTPNPCAICNPLMKFGLGLQKALELGC 110 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + + +G +R + + +D +DQSYFL+A Q+ + + FPLG + KE Sbjct: 111 DYIATGHYAQIKEV---NGIKR--IAKAVDESKDQSYFLYALPQEAIDRIIFPLGALLKE 165 Query: 199 SVRDLAREMGL---DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 ++ A E+ + +SQ+ICFV+Q Y D++K ++ + EG + + NG+ +G Sbjct: 166 DIKKTALELLPFLGTLQTYKESQEICFVEQS-YIDILK-LHDKVDNEGVVRNSNGKAIGT 223 Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H G ++YTIG+R+G V EP +V ++ ++ ++VG +E L + I + +N Sbjct: 224 HKGYMHYTIGKRKGFSVFGSHEPHYVKAINPQNNEIVVGTKEELAIDSI--KALNKSLPQ 281 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 F + D VK+R P+ + + +Y +S GVA GQA V Y D Sbjct: 282 AFNGGIYD-----VKVRYRSTPLKAQIDIQGEFIYAKLLESAYGVAQGQALVLYQEDC-- 334 Query: 375 ARVLGGGIISGSK 387 VLGGG+I+ ++ Sbjct: 335 --VLGGGVITQAQ 345 >gi|28952048|ref|NP_240085.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11135216|sp|P57349|MNMA_BUCAI RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 368 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 123/376 (32%), Positives = 204/376 (54%), Gaps = 42/376 (11%) Query: 25 VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84 VAMSGGVDSSV A +LK+ Y V G+ ++ + + ++G C + +D+ DA +C +N Sbjct: 11 VAMSGGVDSSVCAWILKKQNYQVEGLFMK---NWEEDDQEGYCSSTKDLLDAENICKKLN 67 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLAT 143 + + ++ + V F Y G TP P + CN+ +KF+ L+ + ++L AD +AT Sbjct: 68 IYLHKMNFSSEYWEYVFENFLKEYKKGNTPNPDILCNKEIKFNMFLNYSIQELKADYIAT 127 Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 GHY R + G + ++ + +D +DQSYFL+ QL + FP+G +KK VR++ Sbjct: 128 GHYARIKKING-----KYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLKKNKVRNI 182 Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-----EGDIVHLNGQILGRHNG 258 A+++ L IA K DS ICF+ K++ ++L +GDIV ++G+++G+H+G Sbjct: 183 AKKIDLKIAKKKDSTGICFIGP-------KKLKNFLSLYISEKKGDIVTISGRVIGKHSG 235 Query: 259 IINYTIGQRRGLGVA--MGE---PLFVVYLDKNSSR-VIVGPRESLEVHRIYL----REI 308 + YTIGQR+GLG+ GE P +VV +KN + +++ + S H + + + I Sbjct: 236 VFYYTIGQRQGLGIGGIKGEYNIPWYVV--EKNIEKNILIVAQGSYNKHLMSIGLIAKNI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVF 367 NW+ D + C K R Q + ++ N+ + + F+ V GQ+ VF Sbjct: 294 NWIN----YDQLSFPLSCMAKTRYRQKDIICKIEYINNHHIKILFDCPVAAVTPGQSVVF 349 Query: 368 YTSDSNEARVLGGGII 383 Y SD +GGGII Sbjct: 350 YVSDI----CIGGGII 361 >gi|81241404|gb|ABB62114.1| conserved hypothetical protein [Shigella dysenteriae Sd197] Length = 383 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 132/394 (33%), Positives = 210/394 (53%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 61 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L + LGAD +ATGHY+R DGK R + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRR---ADVDGKSR--LLRGLDSNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + + R Sbjct: 173 LSHEQIAKSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVG 293 A G I+ ++G +G H G++ +T+GQR+GLG+ EP +VV D +N+ ++ Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQ 290 Query: 294 PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYV 350 E + I L ++++W+ F + +C VK R Q +P V+ +DD + V Sbjct: 291 GHEHPRLMSIGLIAQQLHWVDREPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY N LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFY----NGEVCLGGGIIE 376 >gi|205822022|sp|A8H5M1|MNMA_SHEPA RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 371 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 130/374 (34%), Positives = 199/374 (53%), Gaps = 32/374 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 12 KVIVGMSGGVDSSVSAYLLMKQGYQVEGLFMKNWEEDDTDEY---CAAADDLKDAQAVCD 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 69 KLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDADY 128 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R R DG + M R +D +DQSYFL+ +Q+ FP+G++ K V Sbjct: 129 IAMGHYVRRRDI---DGTSQ--MLRGVDGNKDQSYFLYTLGYEQVARSLFPVGELDKSEV 183 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+EMGL DK DS ICF+ + K+ D ++ A G+I G+++G H G++ Sbjct: 184 REIAKEMGLITHDKKDSTGICFIGERKFTDFLQTFLP--AQPGNIETSEGEVIGTHQGLM 241 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ + +P +VV D + +IVG PR L + + +++W Sbjct: 242 YHTLGQRKGLGIGGLKNSNDDPWYVVEKDLVRNVLIVGQGGNHPR--LMSNGLVANQLHW 299 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYT 369 + +G K VK R Q VP V + DD + V F++ V GQ+ VFY Sbjct: 300 VD----RKGPANGSKITVKTRYRQQDVPCSVTYDSDDVLRVIFDEPVAAVTPGQSAVFYD 355 Query: 370 SDSNEARVLGGGII 383 + LGGGII Sbjct: 356 GEI----CLGGGII 365 >gi|301167152|emb|CBW26731.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteriovorax marinus SJ] Length = 382 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 130/379 (34%), Positives = 206/379 (54%), Gaps = 18/379 (4%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+ ++ V+V MSGGVDSSV AA+LK GY+VIG+ ++ + + + G C + ++ D Sbjct: 11 KSNEETTVIVGMSGGVDSSVCAAVLKEQGYNVIGMFMKNWEEQDEN---GVCQSSKEYAD 67 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 VC+ +++ +Y D+ + +R+ V F Y AG TP P + CNR +KF L+ + Sbjct: 68 VISVCEKLDIPYYSVDFVKEYRDNVFQHFLDEYEAGFTPNPDILCNREIKFKVFLNKALE 127 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD LATGHY ++ L G++ + + D +DQ+YFL+ +++L + FP+G + Sbjct: 128 LGADYLATGHYCQNILIDGENH-----LVKGNDPGKDQTYFLYTMKKEKLEHVHFPIGHL 182 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K VR LA + L K DS ICF+ + + + + N G L+G+ +G Sbjct: 183 PKTEVRKLAEKFDLSTKHKKDSTGICFIGERNFKNFLS--NYIQIKPGKFETLSGEEVGE 240 Query: 256 HNGIINYTIGQRR-GLGVAMGEPLFVVYLDKNSSRVIVGPRE---SLEVHRIYLREINWL 311 H+G YTIGQR+ G P FVV D + VIV E +L ++ EI+W+ Sbjct: 241 HSGSAYYTIGQRKGLGLGGPGAPWFVVGKDTKRNVVIVERGEDHPALFFDELWADEISWV 300 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 G F+ + KC KIR Q+ + + +DG ++V F++++ VA Q+ VFYT Sbjct: 301 S-GEFKGELP--LKCKAKIRYRQEDQDCTITKIEDGELHVQFDQAQRAVALRQSIVFYTQ 357 Query: 371 DSNEARVLGGGIISGSKRS 389 A LGG +IS + +S Sbjct: 358 VQGHAVCLGGAMISRAGKS 376 >gi|312172139|emb|CBX80396.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erwinia amylovora ATCC BAA-2158] Length = 369 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 125/375 (33%), Positives = 202/375 (53%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ G+ V G+ ++ + + C A +D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGFQVEGLFMKNWEEEDGEE---YCTAAEDLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIYLHTINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + DGK R + R +D +DQSYFL+ + QQ+ FP+G++ K V Sbjct: 124 IATGHYARRQ---DVDGKSR--LLRGLDGNKDQSYFLYTLSHQQIAQSLFPVGELAKPEV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ + + R A G I+ ++G +G+H G++ Sbjct: 179 RRIAEQLELVTAKKKDSTGICFIGERKFTEFLARYLP--AQPGAIISVDGVNVGQHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ A +P +VV D ++ ++V PR L + ++++W Sbjct: 237 YHTLGQRKGLGIGGRKEANEDPWYVVDKDVTNNLLVVAQGHDHPR--LMSQGLTAQQLHW 294 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYT 369 + + + +C VK R Q+ +P V D + + V F+ V GQ+ VFY Sbjct: 295 VDRNVLSAPL----RCAVKTRYRQEDIPCTVIPLDAERIEVRFDYPVAAVTPGQSAVFYL 350 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 351 DEV----CLGGGIIE 361 >gi|24051447|gb|AAN42769.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30040928|gb|AAP16658.1| hypothetical protein S1235 [Shigella flexneri 2a str. 2457T] gi|281600566|gb|ADA73550.1| putative tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Shigella flexneri 2002017] Length = 383 Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 134/394 (34%), Positives = 212/394 (53%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 61 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L + LGAD +ATGHY+R R V DGK R + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + + R Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVG 293 A G I+ ++G +G H G++ +T+GQR+GLG+ EP +VV D +N+ V+ Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQ 290 Query: 294 PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYV 350 E + + L ++++W+ F + +C VK R Q +P V+ +DD + V Sbjct: 291 GHEHPRLMSVGLIAQQLHWVDREPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIKV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY N LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFY----NGEVCLGGGIIE 376 >gi|157962359|ref|YP_001502393.1| tRNA-specific 2-thiouridylase MnmA [Shewanella pealeana ATCC 700345] gi|157847359|gb|ABV87858.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella pealeana ATCC 700345] Length = 398 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 130/374 (34%), Positives = 199/374 (53%), Gaps = 32/374 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 39 KVIVGMSGGVDSSVSAYLLMKQGYQVEGLFMKNWEEDDTDEY---CAAADDLKDAQAVCD 95 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 96 KLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDADY 155 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R R DG + M R +D +DQSYFL+ +Q+ FP+G++ K V Sbjct: 156 IAMGHYVRRRDI---DGTSQ--MLRGVDGNKDQSYFLYTLGYEQVARSLFPVGELDKSEV 210 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+EMGL DK DS ICF+ + K+ D ++ A G+I G+++G H G++ Sbjct: 211 REIAKEMGLITHDKKDSTGICFIGERKFTDFLQTFLP--AQPGNIETSEGEVIGTHQGLM 268 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ + +P +VV D + +IVG PR L + + +++W Sbjct: 269 YHTLGQRKGLGIGGLKNSNDDPWYVVEKDLVRNVLIVGQGGNHPR--LMSNGLVANQLHW 326 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYT 369 + +G K VK R Q VP V + DD + V F++ V GQ+ VFY Sbjct: 327 VD----RKGPANGSKITVKTRYRQQDVPCSVTYDSDDVLRVIFDEPVAAVTPGQSAVFYD 382 Query: 370 SDSNEARVLGGGII 383 + LGGGII Sbjct: 383 GEI----CLGGGII 392 >gi|93005976|ref|YP_580413.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Psychrobacter cryohalolentis K5] gi|122415456|sp|Q1QBM4|MNMA_PSYCK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|92393654|gb|ABE74929.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Psychrobacter cryohalolentis K5] Length = 408 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 132/383 (34%), Positives = 206/383 (53%), Gaps = 24/383 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 +P V+V MSGGVDSSV A LL++ G+ V G+ ++ + ++ C A D+ D Sbjct: 28 NDPSTKHVIVGMSGGVDSSVSAVLLQQAGFMVEGLFMKNWEEDDGTEY---CTAMDDLAD 84 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ VCD I + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 85 AQAVCDKIGIKLHTANFAMEYWDRVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLDYALT 144 Query: 136 LGADVLATGHYIRSRL-YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD +ATGHY R + Y +DG + R +D +DQSYFL A +L FP+G+ Sbjct: 145 LGADYIATGHYTRRSVNYKNNDGIEVAQLLRGLDNNKDQSYFLHAVGGDKLAKTLFPVGE 204 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 +KK VR +A E L A+K DS ICF+ + ++ D +++ A +GDIV +G +G Sbjct: 205 LKKPVVRQIAEEHDLITANKKDSTGICFIGERRFKDFLQQYLP--AQKGDIVTDDGITIG 262 Query: 255 RHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLR 306 H+G++ YT+GQR G+G+ EP FV+ D +++R+IVG + + + Sbjct: 263 THDGLMYYTLGQRGGIGIGGVKDRPEEPWFVLAKDLDNNRLIVGQGHEHAMMLSNELQAY 322 Query: 307 EINWLGDGLFEDAVV--DGFKCFVKIRSSQ-DPVPVFVQRNDDG--VYVDFEKSEVGVAS 361 +++W+ D L + DG +C K R Q D N++G V V F++ + V Sbjct: 323 KLDWV-DVLPPADIFSEDGLRCMAKSRYRQPDQACTVFANNENGSEVRVVFDEPQRAVTP 381 Query: 362 GQACVFYTSDSNEARVLGGGIIS 384 GQ+ VFY + LGGG+I+ Sbjct: 382 GQSAVFYIDEV----CLGGGVIA 400 >gi|323466789|gb|ADX70476.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus helveticus H10] Length = 375 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 133/379 (35%), Positives = 191/379 (50%), Gaps = 25/379 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ S G C A +D D ++V Sbjct: 7 IRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDS---GVCTATEDYEDVKKVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + + V F + Y G TP P V CN +KF L L AD Sbjct: 64 DKIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLDFAMDLDADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY ++ D M RP D +DQ+YFL Q Q+ + FPL ++ K V Sbjct: 124 IAMGHYAKTV----KDADGLTHMMRPKDGNKDQTYFLNQLNQDQIKKVIFPLANLTKPQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A GL IA K DS ICF+ + + + A G +V +G+++G H G++ Sbjct: 180 REIALANGLAIAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGKVVGEHAGLM 237 Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 YTIGQR+GLG+ +P FVV D + +IV + + +Y + F Sbjct: 238 YYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSKLLYASRLKASDMSFF 295 Query: 317 ---EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD--FEKSEVGVASGQACVFYTSD 371 D V+ F C K R Q V V V+ + D D F++ V GQA V Y + Sbjct: 296 TGKPDHDVE-FHCSAKFRYRQCDVGVTVKYHADDNTADVYFDEPARAVTPGQALVLYQGE 354 Query: 372 SNEARVLGGGIISGSKRSD 390 LGGG I + + D Sbjct: 355 ----ECLGGGNIDAAYQED 369 >gi|154173866|ref|YP_001408766.1| tRNA-specific 2-thiouridylase MnmA [Campylobacter curvus 525.92] gi|205811591|sp|A7GZX4|MNMA_CAMC5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|112802625|gb|EAT99969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter curvus 525.92] Length = 339 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 120/369 (32%), Positives = 201/369 (54%), Gaps = 35/369 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++VAMSGGVDS++ A +LK G+++ G ++L+ + +++ ++V Sbjct: 1 MKIMVAMSGGVDSTMTAKILKEAGHEIEGCYMKLHQKPGYHE--------ENIRKVKKVG 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + ++ D +++F V PF Y G+TP PC CNR +K LL+ +Q G + Sbjct: 53 EYLGIKVHILDLQDKFNEFVYDPFVRLYKEGKTPNPCALCNRFIKLGALLNFAKQNGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY++ DG + D +DQSYFL ++ L D+ FPLGD K + Sbjct: 113 LATGHYVQII-----DG----FVTMAKDPSKDQSYFLAQVPKEVLKDVIFPLGDKFKADI 163 Query: 201 RDLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 ++LARE+ + + A + +S +ICFV+ Y +++ + + L G++V NG ++GRH G Sbjct: 164 KELAREVPVLNEFATQPESSEICFVED-TYIEILNK-HYNTNLPGNVVDKNGNVIGRHQG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V EP FV+ ++ + + ++VG ++ L + L +N LF Sbjct: 222 YMHYTIGKRRGFEVFGAHEPHFVLKINADKNEIVVGSKDDLAQKIVELENVN-----LFI 276 Query: 318 DAVVDGFKCFVKI--RSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 D D F+C KI RS + V + + + V ++ +GVA GQ CV Y + Sbjct: 277 DE--DEFECETKIRYRSPKLEASVKIDKQNKTAVVALSQNALGVAQGQLCVMYDGE---- 330 Query: 376 RVLGGGIIS 384 RV+ G I Sbjct: 331 RVIASGFIK 339 >gi|300816836|ref|ZP_07097056.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 107-1] gi|300821083|ref|ZP_07101232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 119-7] gi|300906948|ref|ZP_07124620.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 84-1] gi|300917906|ref|ZP_07134539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 115-1] gi|300922663|ref|ZP_07138760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 182-1] gi|300928309|ref|ZP_07143845.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 187-1] gi|300949484|ref|ZP_07163481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 116-1] gi|300955539|ref|ZP_07167901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 175-1] gi|301306077|ref|ZP_07212155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 124-1] gi|301328492|ref|ZP_07221558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 78-1] gi|301644551|ref|ZP_07244544.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 146-1] gi|309796520|ref|ZP_07690927.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 145-7] gi|331641677|ref|ZP_08342812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli H736] gi|331652184|ref|ZP_08353203.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli M718] gi|331676926|ref|ZP_08377622.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli H591] gi|300317578|gb|EFJ67362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 175-1] gi|300401295|gb|EFJ84833.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 84-1] gi|300414896|gb|EFJ98206.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 115-1] gi|300421012|gb|EFK04323.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 182-1] gi|300451104|gb|EFK14724.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 116-1] gi|300463695|gb|EFK27188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 187-1] gi|300526382|gb|EFK47451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 119-7] gi|300530610|gb|EFK51672.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 107-1] gi|300838649|gb|EFK66409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 124-1] gi|300845099|gb|EFK72859.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 78-1] gi|301077133|gb|EFK91939.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 146-1] gi|308119832|gb|EFO57094.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 145-7] gi|315135765|dbj|BAJ42924.1| trmU [Escherichia coli DH1] gi|315254893|gb|EFU34861.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 85-1] gi|324017533|gb|EGB86752.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 117-3] gi|331038475|gb|EGI10695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli H736] gi|331050462|gb|EGI22520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli M718] gi|331075615|gb|EGI46913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli H591] gi|332102031|gb|EGJ05377.1| conserved hypothetical protein [Shigella sp. D9] Length = 383 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 134/394 (34%), Positives = 212/394 (53%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 61 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L + LGAD +ATGHY+R R V DGK R + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + + R Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVG 293 A G I+ ++G +G H G++ +T+GQR+GLG+ EP +VV D +N+ V+ Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQ 290 Query: 294 PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYV 350 E + + L ++++W+ F + +C VK R Q +P V+ +DD + V Sbjct: 291 GHEHPRLMSVGLIAQQLHWVDREPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY N LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFY----NGEVCLGGGIIE 376 >gi|161503672|ref|YP_001570784.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865019|gb|ABX21642.1| hypothetical protein SARI_01756 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 383 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 135/398 (33%), Positives = 213/398 (53%), Gaps = 36/398 (9%) Query: 1 MVVSEATRLN--SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR 58 MV A + N S+ + ++PK +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MVEYAALKFNVASIPMSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEED 58 Query: 59 KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118 + C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + Sbjct: 59 DGEEY---CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDI 115 Query: 119 DCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177 CN+ +KF L + LGAD +ATGHY+R V +GK R + R +D +DQSYFL Sbjct: 116 LCNKEIKFKAFLEFAAEDLGADYIATGHYVRR---VDINGKSR--LLRGLDGNKDQSYFL 170 Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA 237 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R Sbjct: 171 YTLGHEQIAQSLFPVGELEKPQVRKIAEDLGLITAKKKDSTGICFIGERKFRDFLGRYLP 230 Query: 238 GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV 292 A G I+ ++G +G H G++ +T+GQR+GLG+ +P +VV D ++ +IV Sbjct: 231 --AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIV 288 Query: 293 G-----PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDD 346 PR L + ++++W+ F + C VK R Q +P + +DD Sbjct: 289 AQGHEHPR--LMSSGLIAQQLHWVDREPFTGTL----SCTVKTRYRQTDIPCTINALDDD 342 Query: 347 GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + V F++ V GQ+ VFY+ + LGGGII Sbjct: 343 RIEVIFDEPVAAVTPGQSAVFYSGEV----CLGGGIIE 376 >gi|188534099|ref|YP_001907896.1| tRNA-specific 2-thiouridylase MnmA [Erwinia tasmaniensis Et1/99] gi|188029141|emb|CAO97013.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erwinia tasmaniensis Et1/99] Length = 369 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 126/375 (33%), Positives = 201/375 (53%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAEDLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIYLHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + DGK R + R +D +DQSYFL+ +Q+ FP+G++ K V Sbjct: 124 IATGHYVRRQ---DVDGKSR--LLRGLDGNKDQSYFLYTLGHEQIAQSLFPVGELAKPEV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ + + R A G I+ ++G +G+H G++ Sbjct: 179 RRIAEQLELVTAKKKDSTGICFIGERKFTEFLSRYLP--AQPGPILSVDGDNVGQHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ A +P +VV D ++ ++V PR L + ++++W Sbjct: 237 YHTLGQRKGLGIGGRKEANDDPWYVVDKDVANNVLVVAQGHEHPR--LMSTGLIAQQLHW 294 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYT 369 + D++ +C VK R Q +P V D + + V F+ V GQ+ VFY Sbjct: 295 VD----RDSLTTPLRCTVKTRYRQQDIPCTVTPVDAERIEVRFDFPVAAVTPGQSAVFYL 350 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 351 DEV----CLGGGIIE 361 >gi|16419753|gb|AAL20163.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261246446|emb|CBG24256.1| 5-methylaminomethyl-2-thiouridylate-methyltrans ferase EC 2.1.1.61 [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|323129504|gb|ADX16934.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 383 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 134/396 (33%), Positives = 215/396 (54%), Gaps = 32/396 (8%) Query: 1 MVVSEATRLN--SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR 58 M+ A + N S+ + ++PK +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MIEYAALKFNVASIPMSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEED 58 Query: 59 KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118 + C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + Sbjct: 59 DGEEY---CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDI 115 Query: 119 DCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177 CN+ +KF L + LGAD +ATGHY+R R V +GK R + R +D +DQSYFL Sbjct: 116 LCNKEIKFKAFLEFAAEDLGADYIATGHYVR-RADV--NGKSR--LLRGLDGNKDQSYFL 170 Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA 237 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R Sbjct: 171 YTLGHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP 230 Query: 238 GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVI 291 A G I+ ++G +G H G++ +T+GQR+GLG+ +P +VV D +N+ ++ Sbjct: 231 --AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIV 288 Query: 292 VGPRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGV 348 E + + L ++++W+ F + +C VK R Q +P + NDD + Sbjct: 289 AQGHEHPRLMSVGLIAQQLHWVDREPFTGTL----RCTVKTRYRQTDIPCTINALNDDRI 344 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 V F++ V GQ+ VFY+ + LGGGII Sbjct: 345 EVIFDEPVAAVTPGQSAVFYSGEV----CLGGGIIE 376 >gi|81245791|gb|ABB66499.1| conserved hypothetical protein [Shigella boydii Sb227] Length = 383 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 134/394 (34%), Positives = 212/394 (53%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 61 EEY---CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L + LGAD +ATGHY+R R V DGK R + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + + R Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVG 293 A G I+ ++G +G H G++ +T+GQR+GLG+ EP +VV D +N+ V+ Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQ 290 Query: 294 PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYV 350 E + + L ++++W+ F + +C VK R Q +P V+ +DD + V Sbjct: 291 GHEHPRLMSVGLIAQQLHWVDREPFTGTM----RCSVKTRYRQTDIPCTVKALDDDRIEV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY N LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFY----NGEVCLGGGIIE 376 >gi|260495095|ref|ZP_05815224.1| tRNA methyl transferase [Fusobacterium sp. 3_1_33] gi|260197538|gb|EEW95056.1| tRNA methyl transferase [Fusobacterium sp. 3_1_33] Length = 343 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 119/366 (32%), Positives = 193/366 (52%), Gaps = 28/366 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV+ MSGGVDSSV A LLK GY+VIGVTL Y + +D+ D ++VCD Sbjct: 3 KVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQYLEENS----------KDIEDTKKVCD 52 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H V + + F N VI F Y +G+TP PCV C+ +KF L + + A+ + Sbjct: 53 KLGIIHEVVNIRKDFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFDIADKYKAEYV 112 Query: 142 ATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 ATGHY S ++ + ++ + +DQSY L+ + +L L FPL K+ Sbjct: 113 ATGHYTSVEYSEIF------SKYLLKSVHSIIKDQSYMLYRLSPNKLERLIFPLKYYTKQ 166 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A ++GL+I +K DSQ ICF ++G Y + +K + G+ V +G ILG H G Sbjct: 167 EIREIALKLGLEIYNKKDSQGICFAKEG-YKEFLKENLKDKIVRGNYVDKDGNILGEHEG 225 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 YT+GQRRGLG+ + +P+F+ + ++ +++G L ++ L IN+ +E Sbjct: 226 YQLYTMGQRRGLGINLSKPIFITEIKPQTNEIVLGEFSELFTDKVEL--INYKFSVEYEK 283 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 ++ + + R S + ++ D +Y + + A GQ VF+ + V+ Sbjct: 284 --LENLELLARPRFSSTGFYGKIIKDKDKIYFKYNEENAHNAKGQHIVFFY----DGFVV 337 Query: 379 GGGIIS 384 GGG I Sbjct: 338 GGGEIK 343 >gi|254291552|ref|ZP_04962342.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae AM-19226] gi|150422504|gb|EDN14461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae AM-19226] Length = 372 Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 123/375 (32%), Positives = 198/375 (52%), Gaps = 30/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 13 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCD 69 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 70 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 129 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R +G++ + M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 130 IAMGHYVRRTF--PQNGEKPQ-MLRGLDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 186 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A K DS ICF+ + K+ D + R A G I G+++G H G++ Sbjct: 187 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 244 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLREINW 310 +T+GQR+GL + + +P +V DK+ R ++ L+ H + +++W Sbjct: 245 YHTLGQRKGLHIGGMKESSEQPWYVA--DKDLKRNVLIAVQGADHPLLKSHGLVAAQLHW 302 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + +C VK R Q D + +DD + V F++ +V V GQ+ VFY Sbjct: 303 VD----RTPITGPVRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAVFYQ 358 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 359 GEI----CLGGGIIE 369 >gi|293414424|ref|ZP_06657073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli B185] gi|291434482|gb|EFF07455.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli B185] Length = 368 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 129/373 (34%), Positives = 204/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R V DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 124 IATGHYVRR---VDVDGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G++ Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ EP +VV D +N+ ++ E + + L ++++W+ Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVD 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 F + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY--- 349 Query: 372 SNEARVLGGGIIS 384 N LGGGII Sbjct: 350 -NGKVCLGGGIIE 361 >gi|165923972|ref|ZP_02219804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coxiella burnetii RSA 334] gi|165916580|gb|EDR35184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coxiella burnetii RSA 334] Length = 362 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 193/369 (52%), Gaps = 23/369 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + V +SGGVDSSV A +LK GY+VIG+ +Q + + + C A QD+ DA+ + D Sbjct: 10 IAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWET---DSKDPFCTAEQDLSDAKAIADH 66 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + YV ++ + + N V +A G TP P V CNR +KF LL ++LGA LA Sbjct: 67 IGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLEHAKKLGATHLA 126 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ R++ + D +DQSYFL Q QL + FP+G +K VR Sbjct: 127 TGHYA----CIQNENNEYRLL-KSNDSHKDQSYFLHLLNQYQLANSVFPIGGYQKSEVRA 181 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A++ G K DS ICF+ + K+ D + +A G+I G+I+G+H+GI+ Y Sbjct: 182 IAKKRGFINHAKKDSTGICFIGERKFKDFLNEF--LLAQPGNIETPEGKIIGKHDGIMFY 239 Query: 263 TIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 T+GQR+GL + GE P +VV DK+ R ++ + E +Y +E+ Sbjct: 240 TVGQRKGLHIGGRPDAGEAPWYVV--DKDVKRNVLIVVQGYEHPLLYSQELTCTNLHWIR 297 Query: 318 DAVVD-GFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 D C K R Q D V + ++D +V FE + + GQ+ VFY + Sbjct: 298 DTEPSFPLTCKAKTRCRQADQTCVITRLDNDHCHVQFEHPQRAITRGQSVVFYLGN---- 353 Query: 376 RVLGGGIIS 384 LGGGII+ Sbjct: 354 ECLGGGIIN 362 >gi|293396528|ref|ZP_06640804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Serratia odorifera DSM 4582] gi|291420792|gb|EFE94045.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Serratia odorifera DSM 4582] Length = 370 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 126/375 (33%), Positives = 201/375 (53%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVTAYLLQQQGYQVAGLFMKNWEEDDDEE---YCSAATDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADF 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 125 IATGHYVRRQDV---DGKNR--LLRGVDGNKDQSYFLYTLSHEQVAQSLFPVGELEKPQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ D + R A G IV ++GQ +G H G++ Sbjct: 180 RRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVTVDGQTIGEHQGLM 237 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ + +P +VV D +++++V PR L + ++++W Sbjct: 238 YHTLGQRKGLGIGGMKDSSEDPWYVVDKDVANNQLVVAQGHDHPR--LMSVGLIAQQLHW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYT 369 + + +C VK R Q + V D + + V F++ V GQ+ VFY Sbjct: 296 VD----RQPLTAPLRCTVKTRYRQQDLACTVTPIDAERIEVRFDEPVAAVTPGQSAVFYQ 351 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 GEI----CLGGGIIE 362 >gi|301154862|emb|CBW14325.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus parainfluenzae T3T1] Length = 382 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 132/389 (33%), Positives = 214/389 (55%), Gaps = 33/389 (8%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +L++ L +N +V+ MSGGVDSSV A +L++ GY V G+ ++ + + C Sbjct: 12 KLSAEQLAENATK-KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YC 67 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 68 TAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFK 127 Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L + LGA+ +ATGHY+R R G D + + R +D +DQSYFL+ ++ Q+ Sbjct: 128 AFLEYAAEDLGANYIATGHYVRRR---GADNQAE--LLRGLDSNKDQSYFLYTLSKHQVG 182 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R A GDI Sbjct: 183 QSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGDIR 240 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRE 296 ++G+I+GRH G++ +T+GQR+GLG+ A E +VV D ++ +IV PR Sbjct: 241 TVDGEIIGRHEGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR- 299 Query: 297 SLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKS 355 L + ++++W+ + V + F+C VK R Q + V+ +DD + V F++ Sbjct: 300 -LFSKGLIAKQLHWVN----REPVREAFRCTVKTRYRQTDIACLVEPIDDDCIRVIFDEP 354 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGIIS 384 + V GQ+ VFY + LGGGII Sbjct: 355 QAAVTPGQSAVFYLDEV----CLGGGIIE 379 >gi|12514787|gb|AAG55959.1|AE005329_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13361069|dbj|BAB35028.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|209772838|gb|ACI84731.1| hypothetical protein ECs1605 [Escherichia coli] gi|209772840|gb|ACI84732.1| hypothetical protein ECs1605 [Escherichia coli] gi|209772842|gb|ACI84733.1| hypothetical protein ECs1605 [Escherichia coli] gi|209772844|gb|ACI84734.1| hypothetical protein ECs1605 [Escherichia coli] gi|209772846|gb|ACI84735.1| hypothetical protein ECs1605 [Escherichia coli] Length = 383 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 133/394 (33%), Positives = 212/394 (53%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 61 EEY---CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L + LGAD +ATGHY+R R V DGK R + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + + R Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVG 293 A G I+ ++G +G H G++ +T+GQR+GLG+ EP +VV D +N+ ++ Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQ 290 Query: 294 PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYV 350 E + + L ++++W+ F + +C VK R Q +P V+ +DD + V Sbjct: 291 GHEHPRLMSVGLIAQQLHWVDREPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY N LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFY----NGEVCLGGGIIE 376 >gi|293404489|ref|ZP_06648483.1| trmU [Escherichia coli FVEC1412] gi|298380264|ref|ZP_06989869.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli FVEC1302] gi|300896838|ref|ZP_07115333.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 198-1] gi|300938705|ref|ZP_07153429.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 21-1] gi|301024581|ref|ZP_07188253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 69-1] gi|331646392|ref|ZP_08347495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli M605] gi|281178243|dbj|BAI54573.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Escherichia coli SE15] gi|291429075|gb|EFF02100.1| trmU [Escherichia coli FVEC1412] gi|298279962|gb|EFI21470.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli FVEC1302] gi|300359320|gb|EFJ75190.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 198-1] gi|300396506|gb|EFJ80044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 69-1] gi|300456350|gb|EFK19843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 21-1] gi|331045144|gb|EGI17271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli M605] Length = 383 Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 133/394 (33%), Positives = 212/394 (53%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 61 EEY---CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L + LGAD +ATGHY+R R V DGK R + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + + R Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVG 293 A G I+ ++G +G H G++ +T+GQR+GLG+ EP +VV D +N+ ++ Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQ 290 Query: 294 PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYV 350 E + + L ++++W+ F + +C VK R Q +P V+ +DD + V Sbjct: 291 GHEHPRLMSVGLIAQQLHWVDREPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY N LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFY----NGEVCLGGGIIE 376 >gi|257870651|ref|ZP_05650304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus gallinarum EG2] gi|257804815|gb|EEV33637.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus gallinarum EG2] Length = 372 Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 139/376 (36%), Positives = 203/376 (53%), Gaps = 25/376 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RVVV MSGGVDSSV A LLK GYDV+G+ ++ ++ + G C A +D D + Sbjct: 4 ENTRVVVGMSGGVDSSVTALLLKEQGYDVVGIFMKNWDD---TDENGVCTATEDYKDVAK 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGA Sbjct: 61 VAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + V D M R +D +DQ+YFL +Q QL FPLG M+K Sbjct: 121 DYVATGHYAQ----VETDENGVTHMLRGVDSNKDQTYFLSQLSQAQLSKTMFPLGGMEKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A GL A K DS +CF+ + + + N A +G++V L+G++ G+H+G Sbjct: 177 EVRAIAERAGLATAKKKDSTGVCFIGEKNFKQFLS--NYLPAKKGNMVTLDGEVKGQHDG 234 Query: 259 IINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 ++ YTIGQR+GLG+ G EP FVV D ++ + VG +L R+ +I++ Sbjct: 235 LMYYTIGQRQGLGIGGGGTSQEPWFVVGKDLATNTLYVGQGFHHPALYADRLEASQIHFT 294 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370 D D + FKC K R Q V V V+ ++D V F++ + GQA VFY Sbjct: 295 TD---TDRPSE-FKCTAKFRYRQQDVGVSVRLLDNDRAEVIFDEPVRAITPGQAVVFY-- 348 Query: 371 DSNEARVLGGGIISGS 386 + LGGG+I + Sbjct: 349 --DGMECLGGGLIDAA 362 >gi|212218582|ref|YP_002305369.1| tRNA-specific 2-thiouridylase MnmA [Coxiella burnetii CbuK_Q154] gi|259495827|sp|B6J7H5|MNMA_COXB1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|212012844|gb|ACJ20224.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coxiella burnetii CbuK_Q154] Length = 371 Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 193/369 (52%), Gaps = 23/369 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + V +SGGVDSSV A +LK GY+VIG+ +Q + + + C A QD+ DA+ + D Sbjct: 19 IAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWET---DSKDPFCTAEQDLSDAKAIADH 75 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + YV ++ + + N V +A G TP P V CNR +KF LL ++LGA LA Sbjct: 76 IGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHAKKLGATHLA 135 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ R++ + D +DQSYFL Q QL + FP+G +K VR Sbjct: 136 TGHYA----CIQNENNEYRLL-KSNDSHKDQSYFLHLLNQYQLANSVFPIGGYQKSEVRA 190 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A++ G K DS ICF+ + K+ D + +A G+I G+I+G+H+GI+ Y Sbjct: 191 IAKKRGFINHAKKDSTGICFIGERKFKDFLNEF--LLAQPGNIETPEGKIIGKHDGIMFY 248 Query: 263 TIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 T+GQR+GL + GE P +VV DK+ R ++ + E +Y +E+ Sbjct: 249 TVGQRKGLHIGGRPDAGEAPWYVV--DKDVKRNVLIVVQGYEHPLLYSQELTCTNLHWIR 306 Query: 318 DAVVD-GFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 D C K R Q D V + ++D +V FE + + GQ+ VFY + Sbjct: 307 DTEPSFPLTCKAKTRCRQADQTCVITRLDNDHCHVQFEHPQRAITRGQSVVFYLGN---- 362 Query: 376 RVLGGGIIS 384 LGGGII+ Sbjct: 363 ECLGGGIIN 371 >gi|261821429|ref|YP_003259535.1| tRNA-specific 2-thiouridylase MnmA [Pectobacterium wasabiae WPP163] gi|261605442|gb|ACX87928.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pectobacterium wasabiae WPP163] Length = 368 Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 130/376 (34%), Positives = 200/376 (53%), Gaps = 33/376 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + ++ C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYHVEGLFMKNWEEDDDTEY---CSAATDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R DGK R + R MD +DQSYFL+ +Q+ FP+G+++K V Sbjct: 125 IATGHYVRRHDV---DGKSR--LLRGMDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259 R +A E+ L A K DS ICF+ + K+ D + R A G I+ + + + +G+H G+ Sbjct: 180 RKIAEELELATAKKKDSTGICFIGERKFTDFLARYLP--AQPGPILSVDDNKPMGQHQGL 237 Query: 260 INYTIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREIN 309 + +T+GQR+GLG+ GE P +VV DK+ + I+ + E R+ ++++ Sbjct: 238 MYHTLGQRKGLGIGGVKDGGEDPWYVV--DKDVANNILYVAQGHEHPRLMSYGLIAQQLH 295 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368 W+ + +C VK R Q +P V DD + V F++ V GQ+ VFY Sbjct: 296 WVD----RQPLTAELRCTVKTRYRQADIPCTVTPLGDDRITVRFDEPVAAVTPGQSAVFY 351 Query: 369 TSDSNEARVLGGGIIS 384 D LGGGII Sbjct: 352 LDDV----CLGGGIIE 363 >gi|153208378|ref|ZP_01946716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coxiella burnetii 'MSU Goat Q177'] gi|120576035|gb|EAX32659.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coxiella burnetii 'MSU Goat Q177'] Length = 362 Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 193/369 (52%), Gaps = 23/369 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + V +SGGVDSSV A +LK GY+VIG+ +Q + + + C A QD+ DA+ + D Sbjct: 10 IAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWET---DSKDPFCTAEQDLSDAKAIADH 66 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + YV ++ + + N V +A G TP P V CNR +KF LL ++LGA LA Sbjct: 67 IGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHAKKLGATHLA 126 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ R++ + D +DQSYFL Q QL + FP+G +K VR Sbjct: 127 TGHYA----CIQNENNEYRLL-KSNDSHKDQSYFLHLLNQYQLANSVFPIGGYQKSEVRA 181 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A++ G K DS ICF+ + K+ D + +A G+I G+I+G+H+GI+ Y Sbjct: 182 IAKKRGFINHAKKDSTGICFIGERKFKDFLNEF--LLAQPGNIETPEGKIIGKHDGIMFY 239 Query: 263 TIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 T+GQR+GL + GE P +VV DK+ R ++ + E +Y +E+ Sbjct: 240 TVGQRKGLHIGGRPDAGEAPWYVV--DKDVKRNVLIVVQGYEHPLLYSQELTCTNLHWIR 297 Query: 318 DAVVD-GFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 D C K R Q D V + ++D +V FE + + GQ+ VFY + Sbjct: 298 DTEPSFPLTCKAKTRCRQADQTCVITRLDNDHCHVQFEHPQRAITRGQSVVFYLGN---- 353 Query: 376 RVLGGGIIS 384 LGGGII+ Sbjct: 354 ECLGGGIIN 362 >gi|227877338|ref|ZP_03995411.1| tRNA-methyltransferase [Lactobacillus crispatus JV-V01] gi|256842900|ref|ZP_05548388.1| tRNA methyl transferase [Lactobacillus crispatus 125-2-CHN] gi|256848726|ref|ZP_05554160.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus MV-1A-US] gi|262045866|ref|ZP_06018830.1| tRNA methyl transferase [Lactobacillus crispatus MV-3A-US] gi|293381734|ref|ZP_06627715.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus crispatus 214-1] gi|312977582|ref|ZP_07789329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus crispatus CTV-05] gi|227863194|gb|EEJ70640.1| tRNA-methyltransferase [Lactobacillus crispatus JV-V01] gi|256614320|gb|EEU19521.1| tRNA methyl transferase [Lactobacillus crispatus 125-2-CHN] gi|256714265|gb|EEU29252.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus MV-1A-US] gi|260573825|gb|EEX30381.1| tRNA methyl transferase [Lactobacillus crispatus MV-3A-US] gi|290921781|gb|EFD98802.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus crispatus 214-1] gi|310895321|gb|EFQ44388.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus crispatus CTV-05] Length = 375 Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 133/387 (34%), Positives = 196/387 (50%), Gaps = 27/387 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ S G C A +D D ++V D Sbjct: 8 RVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDS---GVCTATEDYEDVKKVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F Y G TP P V CN +KF L L AD + Sbjct: 65 KIGIPYYSINFEKEYWHRVFEYFLDEYKKGRTPNPDVMCNSQIKFKSFLEFAMDLDADYI 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 A GHY ++ V D +M RP D +DQ+YFL +Q+Q+ + FPL ++ K VR Sbjct: 125 AMGHYAKT---VKDTNGVTHMM-RPKDGNKDQTYFLSQLSQEQISKVIFPLANLTKPQVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A GL A K DS ICF+ + + + A G +V +G+++G H G++ Sbjct: 181 EIALANGLATAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGKVVGEHAGLMY 238 Query: 262 YTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 YTIGQR+GLG+ +P FVV D + +IV + + +Y +N F Sbjct: 239 YTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSPLLYASRLNASDMSFFT 296 Query: 318 DAVVDGFK--CFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F+ C K R Q + V V+ + D+ V F++ V GQA V Y + Sbjct: 297 GKPDHDFEMHCTAKFRYRQCDIGVTVKYHAADNTADVYFDEPARAVTPGQALVLYKGE-- 354 Query: 374 EARVLGGGIISGSKRSDAVEESLLSVI 400 LGGG I + + EE L ++ Sbjct: 355 --ECLGGGNIDAAYQ----EEKQLQLV 375 >gi|251789549|ref|YP_003004270.1| tRNA-specific 2-thiouridylase MnmA [Dickeya zeae Ech1591] gi|247538170|gb|ACT06791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dickeya zeae Ech1591] Length = 372 Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 126/381 (33%), Positives = 204/381 (53%), Gaps = 33/381 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + ++ C A D+ DA+ VCD Sbjct: 10 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDDTE---YCSAATDLADAQAVCD 66 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 67 KLGIELHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 126 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R DGK + R +D +DQSYFL+ + QQL FP+G+++K V Sbjct: 127 IATGHYVRRH---DIDGKSH--LLRGLDGNKDQSYFLYTLSHQQLAQSLFPVGELEKPQV 181 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259 R +A ++ L A K DS ICF+ + K+ D + R A G I+ + +G+++G H G+ Sbjct: 182 RKIAEQLSLATARKKDSTGICFIGERKFRDFLARYLP--AQPGPILSVDDGKVMGEHQGL 239 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREIN 309 + +T+GQR+GLG+ +P +VV DK+ + ++ + E R+ ++++ Sbjct: 240 MYHTLGQRKGLGIGGVKEGGDDPWYVV--DKDVAGNVLYVAQGHEHPRLMSVGLIAQQLH 297 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368 W+ + + +C VK R Q +P + D D + V F++ V GQ+ VFY Sbjct: 298 WVD----REPLAAPLRCTVKTRYRQADIPCLLTPLDADRIEVRFDEPVAAVTPGQSAVFY 353 Query: 369 TSDSNEARVLGGGIISGSKRS 389 + LGGGII R+ Sbjct: 354 LGEV----CLGGGIIEERLRA 370 >gi|161986546|ref|YP_310111.2| tRNA-specific 2-thiouridylase MnmA [Shigella sonnei Ss046] gi|205829110|sp|Q3Z2Y6|MNMA_SHISS RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 368 Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 131/373 (35%), Positives = 205/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ + + R G G I+ ++G +G H G++ Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPGQP--GKIITVDGDEIGEHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ EP +VV D +N+ V+ E + + L ++++W+ Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVD 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 F + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY--- 349 Query: 372 SNEARVLGGGIIS 384 N LGGGII Sbjct: 350 -NGEVCLGGGIIE 361 >gi|54294275|ref|YP_126690.1| hypothetical protein lpl1340 [Legionella pneumophila str. Lens] gi|81601380|sp|Q5WWV9|MNMA_LEGPL RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|53754107|emb|CAH15580.1| hypothetical protein lpl1340 [Legionella pneumophila str. Lens] Length = 361 Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 123/371 (33%), Positives = 190/371 (51%), Gaps = 27/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK GY V G+ ++ + + C A +D+ DA+ VC+ Sbjct: 4 KVIVGMSGGVDSSVAAWLLKEQGYQVEGLFMKNW---EQDDHNDYCPAAKDLADAQAVCN 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + ++ + + + V F S Y G TP P V CN+ +KF+ L+ LGAD + Sbjct: 61 QLRIPLHTVNFSKEYWDRVFAYFLSEYEKGRTPNPDVLCNKEIKFNAFLNYALTLGADYI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY ++ + G G + + D E+DQ+YFL A + L FP+GD K +R Sbjct: 121 ATGHYAKNTI-EGSIG----YLFKAKDREKDQTYFLHAVEPEALSKTIFPIGDFTKPQIR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 + A+++GL K DS ICF+ + ++ + +A GDI G+ LG+H+G++ Sbjct: 176 EFAKQLGLVTHAKKDSTGICFIGEKRFKTFLNEFI--LAKPGDIKSTGGKTLGQHDGLMF 233 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313 YT+GQR+GLG+ + EP +VV D S+ + V L + I+WL D Sbjct: 234 YTLGQRQGLGIGGLQNSTDEPWYVVDKDIASNTLYVAQGSQHPMLYSQGLICGPIHWLAD 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDS 372 +E+ + CF K R Q + D+ YV F + + GQ VFY + Sbjct: 294 --YENHLP--LTCFAKTRYRQTDQACMISPPDNNQHYVMFSNPQRAITPGQFIVFYEKN- 348 Query: 373 NEARVLGGGII 383 + LGG I Sbjct: 349 ---QCLGGATI 356 >gi|189036221|sp|A9KE87|MNMA_COXBN RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 362 Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 193/369 (52%), Gaps = 23/369 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + V +SGGVDSSV A +LK GY+VIG+ +Q + + + C A QD+ DA+ + D Sbjct: 10 IAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWET---DSKDPFCTAEQDLSDAKAIADH 66 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + YV ++ + + N V +A G TP P V CNR +KF LL ++LGA LA Sbjct: 67 IGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHAKKLGATHLA 126 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ R++ + D +DQSYFL Q QL + FP+G +K VR Sbjct: 127 TGHYA----CIQNENNEYRLL-KSNDSHKDQSYFLHLLNQYQLANSVFPIGGYQKSEVRA 181 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A++ G K DS ICF+ + K+ D + +A G+I G+I+G+H+GI+ Y Sbjct: 182 IAKKRGFINHAKKDSTGICFIGERKFKDFLNEF--LLAQPGNIETPEGKIIGKHDGIMFY 239 Query: 263 TIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 T+GQR+GL + GE P +VV DK+ R ++ + E +Y +E+ Sbjct: 240 TVGQRKGLHIGGRPDAGEAPWYVV--DKDVKRNVLIVVQGYEHPLLYSQELTCTNLHWIR 297 Query: 318 DAVVD-GFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 D C K R Q D V + ++D +V FE + + GQ+ VFY + Sbjct: 298 DTEPSFPLTCKAKTRCRQADQTCVVTRLDNDHCHVQFEHPQRAITRGQSVVFYLGN---- 353 Query: 376 RVLGGGIIS 384 LGGGII+ Sbjct: 354 ECLGGGIIN 362 >gi|294783066|ref|ZP_06748390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 1_1_41FAA] gi|294479944|gb|EFG27721.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 1_1_41FAA] Length = 343 Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 119/363 (32%), Positives = 191/363 (52%), Gaps = 22/363 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV+ MSGGVDSSV A LLK GY+VIGVTL + + +D+ DA++VCD Sbjct: 3 KVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENS----------KDIEDAKKVCD 52 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H V + + F N VI F Y +G+TP PCV C+ +KF L + + AD + Sbjct: 53 RLGIIHEVVNIRKDFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFEIADKYKADYV 112 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + + ++ + +DQSY L+ ++L L FPL K+ +R Sbjct: 113 ATGHYTSVEY---SETFSKYLLKSVHSIIKDQSYILYRLAPEKLERLIFPLKPYSKQEIR 169 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL++ DK DSQ +CF ++G Y + +K ++G+ + G+ILG+H G Sbjct: 170 EIALKIGLEVHDKKDSQGVCFAKEG-YKEFLKENLKDEIVKGNYIDKEGKILGQHEGYQL 228 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQRRGLG+ + + +F+ + ++ +++G L I L N+ FE + Sbjct: 229 YTIGQRRGLGINLSKIVFITEIRAKTNEIVLGEFSELFTDEIEL--TNYKFAVKFEK--L 284 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + + R S + +N+D +Y + + A GQ VF+ + V+GGG Sbjct: 285 EDLNLLARPRFSSTGFYGKLIKNNDKIYFKYNEENAHNAKGQHVVFFYDNF----VVGGG 340 Query: 382 IIS 384 I Sbjct: 341 EIK 343 >gi|237739846|ref|ZP_04570327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 2_1_31] gi|229423454|gb|EEO38501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 2_1_31] Length = 343 Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 120/363 (33%), Positives = 188/363 (51%), Gaps = 22/363 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV+ MSGGVDSSV A LLK GY+VIGVTL + + +D+ DA++VCD Sbjct: 3 KVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENS----------KDIEDAKKVCD 52 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H V + + F N VI F Y +G+TP PCV C+ +KF L + + AD + Sbjct: 53 RLGIIHEVVNIRKDFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFEIADKYKADYV 112 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + + ++ + +DQSY L+ ++L L FPL K+ +R Sbjct: 113 ATGHYTSVEY---SETFSKYLLKSVHSIIKDQSYMLYRLAPEKLERLIFPLKPYSKQEIR 169 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL++ DK DSQ +CF ++G Y + +K ++G + G ILG H G Sbjct: 170 EIALKIGLEVHDKKDSQGVCFAKEG-YKEFLKENLKDEIVKGKYIDKEGNILGEHEGYQL 228 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQRRGLG+ + + +F+ + ++ +++G L I L IN+ FE + Sbjct: 229 YTIGQRRGLGINLSKIVFITEIRAKTNEIVLGEFSELFTDEIEL--INYKFAVEFEK--I 284 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + R S + +N+D +Y + + A GQ VF+ + V+GGG Sbjct: 285 KDLNLLARPRFSSTGFYGKLIKNNDKIYFKYNEENAHNAKGQHVVFFYDNF----VVGGG 340 Query: 382 IIS 384 I Sbjct: 341 EIK 343 >gi|317507343|ref|ZP_07965081.1| tRNA methyl transferase [Segniliparus rugosus ATCC BAA-974] gi|316254361|gb|EFV13693.1| tRNA methyl transferase [Segniliparus rugosus ATCC BAA-974] Length = 354 Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 126/306 (41%), Positives = 167/306 (54%), Gaps = 27/306 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY----NSRKASKRKGSCCAGQDVYDA 76 MRV+ AMSGGVDS+V AA G+DV+GV L L N+R S+ CC+ +D DA Sbjct: 1 MRVLAAMSGGVDSAVAAARAVEAGHDVVGVHLALSRNPDNTRGGSR---GCCSVEDSRDA 57 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RR D + + YV+D+ E F VI F ++YA G TP PCV CN +KF+ LL L Sbjct: 58 RRSADVLGIPFYVWDFSEAFEREVIDQFVATYAEGRTPNPCVTCNEKIKFAALLDRAVAL 117 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 G D +ATGHY R DG + R D ++DQSY L T +QL FP+GD Sbjct: 118 GFDKVATGHYARL------DGT---TLRRSADPDKDQSYVLAVLTAEQLARAMFPVGDTP 168 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVK---RINAGIALEGDIV-HLNG 250 K +R+ A GL +A K DS DICF+ G K F K R AG + G+ H G Sbjct: 169 KPQIREEADRRGLAVAQKPDSHDICFIPSGDTKAFLGAKLAVRSGAG-SRPGEFRDHRTG 227 Query: 251 QILGRHNGIINYTIGQRRG--LGVAMGE--PLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 ++LG H+G + +T+GQRRG LG G+ P +V ++ + V VG E L V + R Sbjct: 228 EVLGHHDGAVGFTVGQRRGLRLGNPTGDGIPRYVTAVEPETGVVRVGTLEDLRVRSLVAR 287 Query: 307 EINWLG 312 + W G Sbjct: 288 KAVWGG 293 >gi|209364013|ref|YP_001424605.2| tRNA-specific 2-thiouridylase MnmA [Coxiella burnetii Dugway 5J108-111] gi|207081946|gb|ABS77207.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coxiella burnetii Dugway 5J108-111] Length = 371 Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 193/369 (52%), Gaps = 23/369 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + V +SGGVDSSV A +LK GY+VIG+ +Q + + + C A QD+ DA+ + D Sbjct: 19 IAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWET---DSKDPFCTAEQDLSDAKAIADH 75 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + YV ++ + + N V +A G TP P V CNR +KF LL ++LGA LA Sbjct: 76 IGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHAKKLGATHLA 135 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ R++ + D +DQSYFL Q QL + FP+G +K VR Sbjct: 136 TGHYA----CIQNENNEYRLL-KSNDSHKDQSYFLHLLNQYQLANSVFPIGGYQKSEVRA 190 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A++ G K DS ICF+ + K+ D + +A G+I G+I+G+H+GI+ Y Sbjct: 191 IAKKRGFINHAKKDSTGICFIGERKFKDFLNEF--LLAQPGNIETPEGKIIGKHDGIMFY 248 Query: 263 TIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 T+GQR+GL + GE P +VV DK+ R ++ + E +Y +E+ Sbjct: 249 TVGQRKGLHIGGRPDAGEAPWYVV--DKDVKRNVLIVVQGYEHPLLYSQELTCTNLHWIR 306 Query: 318 DAVVD-GFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 D C K R Q D V + ++D +V FE + + GQ+ VFY + Sbjct: 307 DTEPSFPLTCKAKTRCRQADQTCVVTRLDNDHCHVQFEHPQRAITRGQSVVFYLGN---- 362 Query: 376 RVLGGGIIS 384 LGGGII+ Sbjct: 363 ECLGGGIIN 371 >gi|62127388|gb|AAX65091.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 383 Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 134/396 (33%), Positives = 215/396 (54%), Gaps = 32/396 (8%) Query: 1 MVVSEATRLN--SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR 58 MV A + N S+ + ++PK +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MVEYAALKFNVASIPMSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEED 58 Query: 59 KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118 + C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + Sbjct: 59 DGEEY---CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDI 115 Query: 119 DCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177 CN+ +KF L + LGAD +ATGHY+R R V +GK R + R +D +DQSYFL Sbjct: 116 LCNKEIKFKAFLEFAAEDLGADYIATGHYVR-RADV--NGKSR--LLRGLDGNKDQSYFL 170 Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA 237 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R Sbjct: 171 YTLGHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP 230 Query: 238 GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVI 291 A G I+ ++G +G H G++ +T+GQR+GLG+ +P +VV D +N+ ++ Sbjct: 231 --AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGTEDPWYVVDKDVENNVLIV 288 Query: 292 VGPRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGV 348 E + + L ++++W+ F + +C VK R Q +P + +DD + Sbjct: 289 AQGHEHPRLMSVGLIAQQLHWVDREPFTGTL----RCTVKTRYRQTDIPCTINALDDDRI 344 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 V F++ V GQ+ VFY+ + LGGGII Sbjct: 345 EVIFDEPVAAVTPGQSAVFYSGEV----CLGGGIIE 376 >gi|187922695|ref|YP_001894337.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia phytofirmans PsJN] gi|229486336|sp|B2SX74|MNMA_BURPP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|187713889|gb|ACD15113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia phytofirmans PsJN] Length = 383 Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 127/373 (34%), Positives = 184/373 (49%), Gaps = 27/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV MSGGVDSSV A LLK GYDV+G+ ++ + S+ C QD D V D Sbjct: 5 KVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L LGA+ + Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R ++ R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRQ---NERNGRFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKTKVR 178 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++ L A K DS ICF+ + + D + R G + +G+++G H G+ Sbjct: 179 EIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTTDGKVVGEHIGLAF 236 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YT GQR+G+G+ GEP FV D S+ + V L H + +W+ Sbjct: 237 YTFGQRKGIGLGGSKDGSGEPWFVAGKDIASNTLYVAQGHDHAWLLSHTLSAGNTSWVAG 296 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR--NDDGVY-VDFEKSEVGVASGQACVFYTS 370 + DGF C K R Q P + +G++ ++F+ ++ V GQ+ V Y Sbjct: 297 ----EPPADGFACGAKTRYRQADAPCTFSSAGSGEGLFELNFDAAQWAVTPGQSAVLYDG 352 Query: 371 DSNEARVLGGGII 383 D LGGGII Sbjct: 353 DV----CLGGGII 361 >gi|88860122|ref|ZP_01134761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudoalteromonas tunicata D2] gi|88818116|gb|EAR27932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudoalteromonas tunicata D2] Length = 366 Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 128/376 (34%), Positives = 200/376 (53%), Gaps = 32/376 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +++V+V MSGGVDSSV A LL + GY V G+ ++ + + C A D+ DA+ V Sbjct: 6 NIKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDTDE---YCAAADDLKDAQAV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGA 138 C+ + + + ++ + + V F Y AG TP P + CN+ +KF L + L A Sbjct: 63 CEKLGIPLHTVNFASEYWDNVFQYFLEEYKAGRTPNPDIMCNKEIKFKAFLQFAAEALNA 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY+R L GD + +M R D +DQSYFL+ + + L FP+G+++K Sbjct: 123 DFIATGHYVRRELR-GD----KYVMIRGDDDNKDQSYFLYTLSHEHLAQTLFPVGEIEKP 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E L DK DS ICF+ + K+ D +++ A G I +G ++G H G Sbjct: 178 EVRRIAEEQNLITHDKKDSTGICFIGERKFKDFLQKFLP--AQPGKIEDTDGNVVGDHEG 235 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREI 308 ++ +T+GQR+GL + GEP +VV D + ++VG PR L + + ++ Sbjct: 236 LMYHTLGQRKGLLIGGMKEGSGEPWYVVDKDLIRNVLVVGQGKDHPR--LYSNGLMANQL 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVF 367 +W+ D + + +C VK R Q +P + DDG V F++ E V GQ+ VF Sbjct: 294 HWV-DRVGPKTTL---RCTVKTRYRQTDLPCTLLVGDDGYARVLFDQPEKAVTPGQSAVF 349 Query: 368 YTSDSNEARVLGGGII 383 Y ++ LGGGII Sbjct: 350 YLNEV----CLGGGII 361 >gi|81628239|sp|Q820W2|MNMA_COXBU RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 362 Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 193/369 (52%), Gaps = 23/369 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + V +SGGVDSSV A +LK GY+VIG+ +Q + + + C A QD+ DA+ + D Sbjct: 10 IAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWET---DSKDPFCTAEQDLSDAKAIADH 66 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + YV ++ + + N V +A G TP P V CNR +KF LL ++LGA LA Sbjct: 67 IGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHAKKLGATHLA 126 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ R++ + D +DQSYFL Q QL + FP+G +K VR Sbjct: 127 TGHYA----CIQNENNEYRLL-KSNDSHKDQSYFLHLLNQYQLANSVFPIGGYQKSEVRA 181 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A++ G K DS ICF+ + K+ D + +A G+I G+I+G+H+GI+ Y Sbjct: 182 IAKKRGFINHAKKDSTGICFIGERKFKDFLNEF--LLAQPGNIETSEGKIIGKHDGIMFY 239 Query: 263 TIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 T+GQR+GL + GE P +VV DK+ R ++ + E +Y +E+ Sbjct: 240 TVGQRKGLHIGGRPDAGEAPWYVV--DKDVKRNVLIVVQGYEHPLLYSQELTCTNLHWIR 297 Query: 318 DAVVD-GFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 D C K R Q D V + ++D +V FE + + GQ+ VFY + Sbjct: 298 DTEPSFPLTCKAKTRCRQADQTCVVTRLDNDHCHVQFEHPQRAITRGQSVVFYLGN---- 353 Query: 376 RVLGGGIIS 384 LGGGII+ Sbjct: 354 ECLGGGIIN 362 >gi|212212452|ref|YP_002303388.1| tRNA-specific 2-thiouridylase MnmA [Coxiella burnetii CbuG_Q212] gi|215919120|ref|NP_820145.2| tRNA-specific 2-thiouridylase MnmA [Coxiella burnetii RSA 493] gi|259495828|sp|B6IZW5|MNMA_COXB2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|206584005|gb|AAO90659.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coxiella burnetii RSA 493] gi|212010862|gb|ACJ18243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coxiella burnetii CbuG_Q212] Length = 371 Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 193/369 (52%), Gaps = 23/369 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + V +SGGVDSSV A +LK GY+VIG+ +Q + + + C A QD+ DA+ + D Sbjct: 19 IAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWET---DSKDPFCTAEQDLSDAKAIADH 75 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + YV ++ + + N V +A G TP P V CNR +KF LL ++LGA LA Sbjct: 76 IGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHAKKLGATHLA 135 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ R++ + D +DQSYFL Q QL + FP+G +K VR Sbjct: 136 TGHYA----CIQNENNEYRLL-KSNDSHKDQSYFLHLLNQYQLANSVFPIGGYQKSEVRA 190 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A++ G K DS ICF+ + K+ D + +A G+I G+I+G+H+GI+ Y Sbjct: 191 IAKKRGFINHAKKDSTGICFIGERKFKDFLNEF--LLAQPGNIETSEGKIIGKHDGIMFY 248 Query: 263 TIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 T+GQR+GL + GE P +VV DK+ R ++ + E +Y +E+ Sbjct: 249 TVGQRKGLHIGGRPDAGEAPWYVV--DKDVKRNVLIVVQGYEHPLLYSQELTCTNLHWIR 306 Query: 318 DAVVD-GFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 D C K R Q D V + ++D +V FE + + GQ+ VFY + Sbjct: 307 DTEPSFPLTCKAKTRCRQADQTCVVTRLDNDHCHVQFEHPQRAITRGQSVVFYLGN---- 362 Query: 376 RVLGGGIIS 384 LGGGII+ Sbjct: 363 ECLGGGIIN 371 >gi|161830166|ref|YP_001597021.1| tRNA-specific 2-thiouridylase MnmA [Coxiella burnetii RSA 331] gi|189040503|sp|A9NDN1|MNMA_COXBR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|161762033|gb|ABX77675.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coxiella burnetii RSA 331] Length = 362 Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 193/369 (52%), Gaps = 23/369 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + V +SGGVDSSV A +LK GY+VIG+ +Q + + + C A QD+ DA+ + D Sbjct: 10 IAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWET---DSKDPFCTAEQDLSDAKAIADH 66 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + YV ++ + + N V +A G TP P V CNR +KF LL ++LGA LA Sbjct: 67 IGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHAKKLGATHLA 126 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ R++ + D +DQSYFL Q QL + FP+G +K VR Sbjct: 127 TGHYA----CIQNENNEYRLL-KSNDSHKDQSYFLHLLNQYQLANSVFPIGGYQKSEVRA 181 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A++ G K DS ICF+ + K+ D + +A G+I G+I+G+H+GI+ Y Sbjct: 182 IAKKRGFINHAKKDSTGICFIGERKFKDFLNEF--LLAKPGNIETSEGKIIGKHDGIMFY 239 Query: 263 TIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 T+GQR+GL + GE P +VV DK+ R ++ + E +Y +E+ Sbjct: 240 TVGQRKGLHIGGRPDAGEAPWYVV--DKDVKRNVLIVVQGYEHPLLYSQELTCTNLHWIR 297 Query: 318 DAVVD-GFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 D C K R Q D V + ++D +V FE + + GQ+ VFY + Sbjct: 298 DTEPSFPLTCKAKTRCRQADQTCVVTRLDNDHCHVQFEHPQRAITRGQSVVFYLGN---- 353 Query: 376 RVLGGGIIS 384 LGGGII+ Sbjct: 354 ECLGGGIIN 362 >gi|85712895|ref|ZP_01043936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Idiomarina baltica OS145] gi|85693275|gb|EAQ31232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Idiomarina baltica OS145] Length = 376 Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 128/381 (33%), Positives = 203/381 (53%), Gaps = 32/381 (8%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 KNP + +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A D+ D Sbjct: 6 KNPSETKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDDDE---YCAAADDLAD 62 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A VC+ + + + ++ + + V F Y AG TP P + CN+ +KF L + Sbjct: 63 AEAVCEKLGIELHTVNFAAEYWDNVFEHFLDEYKAGRTPNPDIMCNKEIKFKAFLEFAAE 122 Query: 136 -LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD +ATGHY+R +DGK + + R +D +DQSYFL+ + + + FP+G+ Sbjct: 123 ALGADYIATGHYVRRAF---NDGKWQ--LLRGLDNNKDQSYFLYTLSHEHVAQTLFPVGE 177 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K VR +A E GL ADK DS ICF+ + K+ D +++ A G I ++G+ LG Sbjct: 178 LEKPEVRRIAEEQGLVTADKKDSTGICFIGERKFKDFLQQYLP--AQPGKIESVDGEELG 235 Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR--- 306 H G++ +TIGQR+GL + A +P +VV DK+ R ++ + R++ + Sbjct: 236 DHEGLMYHTIGQRKGLHIGGLADAGDDPWYVV--DKDVERNVLVVAQGKNHPRLFSKGLI 293 Query: 307 --EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQ 363 +++W+ + + + +C VK R Q + + DG + V F++ V GQ Sbjct: 294 ANQLHWVN----REEITEPLRCVVKTRYRQADIACQITPAADGRITVSFDEPVAAVTPGQ 349 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY D LGGGII Sbjct: 350 SAVFYIDDV----CLGGGIIE 366 >gi|330503284|ref|YP_004380153.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas mendocina NK-01] gi|328917570|gb|AEB58401.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas mendocina NK-01] Length = 362 Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 124/373 (33%), Positives = 193/373 (51%), Gaps = 26/373 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++V MSGGVDSSV A LL GY V G+ ++ ++ ++ C A D+ DA+ VCD Sbjct: 1 MIVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWDEDDGTE---YCTAMDDLADAQAVCDR 57 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + + ++ + + V F + Y AG TP P + CNR +KF L LGAD++A Sbjct: 58 IGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALSLGADLIA 117 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY+R R D R + + +D +DQSYFL A Q+ FP+G+++K VR Sbjct: 118 TGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGVQIAKTLFPVGELEKPQVRA 172 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A + L A K DS ICF+ + ++ D +K+ A GDI GQ++GRH+G++ + Sbjct: 173 IAEKYELATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGDIETTEGQVIGRHHGLMYH 230 Query: 263 TIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDG 314 TIGQR+GLG+ A +P +V+ D + +IVG L + EI W+ Sbjct: 231 TIGQRQGLGIGGLKDASDDPWYVLRKDLTRNVLIVGQGNAHPWLFSRALLASEIYWVNPV 290 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 + K+R Q +++ + G F++ + V GQ+ VFY + Sbjct: 291 DLSSPR----RLTAKVRYRQSDQLCTLEKTETGYRAVFDEPQRAVTPGQSVVFYDGEV-- 344 Query: 375 ARVLGGGIISGSK 387 LGGG+I ++ Sbjct: 345 --CLGGGVIETAE 355 >gi|326794627|ref|YP_004312447.1| tRNA-specific 2-thiouridylase mnmA [Marinomonas mediterranea MMB-1] gi|326545391|gb|ADZ90611.1| tRNA-specific 2-thiouridylase mnmA [Marinomonas mediterranea MMB-1] Length = 371 Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 127/384 (33%), Positives = 203/384 (52%), Gaps = 27/384 (7%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NS + + N K V+V MSGGVDSSV A LL + GY V G+ ++ ++ ++ C Sbjct: 1 MNSSEQNSNTK---VIVGMSGGVDSSVSALLLMQQGYQVEGLFMKNWDEDDGTEY---CT 54 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 A +D+ DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF Sbjct: 55 AKEDLADAQAVCDKLGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKA 114 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 L L AD +ATGHY+R G D ++ + +D +DQSYFL+A + ++ Sbjct: 115 FLEYAMALKADYIATGHYVRK----GFDENGNALLLKGLDNNKDQSYFLYAVGKGEIAKT 170 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 FP+G+++K VR LA E L +K DS ICF+ + ++ D +++ A GDI L Sbjct: 171 FFPVGELEKPEVRRLAEEHDLITHNKKDSTGICFIGERRFKDFLEQYLP--AQPGDIETL 228 Query: 249 NGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVY--LDKNSSRVIVGPRESLEVH 301 G +GRH+G++ +TIGQR+GLG+ EP +VV L++N +V G + ++ Sbjct: 229 EGDKIGRHHGLMYHTIGQRQGLGIGGLSKYPDEPWYVVAKDLERNVLQVTQGGQHP-SLY 287 Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360 + +L N+ D + + C K R Q + DG + V F + + + Sbjct: 288 KTHLIADNF--DWVAREKPSLPLTCKAKCRYRQPDQDCTISELKDGRIEVSFSEPQRAIT 345 Query: 361 SGQACVFYTSDSNEARVLGGGIIS 384 GQ+ VFY ++ LGGGII+ Sbjct: 346 PGQSVVFYLDEN----CLGGGIIN 365 >gi|307299195|ref|ZP_07578996.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermotogales bacterium mesG1.Ag.4.2] gi|306914991|gb|EFN45377.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermotogales bacterium mesG1.Ag.4.2] Length = 357 Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 133/354 (37%), Positives = 192/354 (54%), Gaps = 24/354 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +M++ +A+SGGVDS+V AA L R G DVIG + + +G+ A DA+ V Sbjct: 6 EMKIGIALSGGVDSAVAAARLIRQGNDVIGYHMIVL--------EGNPLANAAADDAKAV 57 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + + D E FR ++ F +SY +GETP PCV CN ++KF LL G + Sbjct: 58 ADHLGIELKIVDLREEFRR-ILNYFTTSYMSGETPNPCVVCNDSIKFGLLLERMFSFGEE 116 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY +RL D+ + R +D +DQSYFL + +L D+ FPLG+M KE Sbjct: 117 KIATGHY--ARLVSLDENV---FLARALDRAKDQSYFLSRIGKHKLHDILFPLGEMTKEE 171 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQILGRHNG 258 VR A + L + K DSQ+ICF+ G Y +K + GI G I +G +LGRH G Sbjct: 172 VRQEASGIDLPVHSKKDSQEICFIPDGDYRSFLK--SRGIEGNPGPITDESGILLGRHTG 229 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 + YTIGQR+G+G + + +V LD ++++I+ R+SL + ++ NW D E Sbjct: 230 LSGYTIGQRKGIGFSGRDRYYVKRLDLKNNKLILAQRQSLMSEALVAKDPNWYIDPGEE- 288 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSD 371 F C KIRSS PV V + + + VDF++ V GQ VFY D Sbjct: 289 -----FDCLCKIRSSMKPVSAKVTIVSGEKIRVDFQEKVWAVTPGQLAVFYIDD 337 >gi|89107979|ref|AP_001759.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Escherichia coli str. K-12 substr. W3110] gi|90111218|ref|NP_415651.4| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|157156703|ref|YP_001462402.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli E24377A] gi|157160657|ref|YP_001457975.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli HS] gi|170020474|ref|YP_001725428.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli ATCC 8739] gi|170080784|ref|YP_001730104.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|191168327|ref|ZP_03030119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli B7A] gi|193066260|ref|ZP_03047312.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli E22] gi|193071716|ref|ZP_03052616.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli E110019] gi|194436948|ref|ZP_03069047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 101-1] gi|209918390|ref|YP_002292474.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli SE11] gi|218553711|ref|YP_002386624.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli IAI1] gi|218694667|ref|YP_002402334.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli 55989] gi|238900387|ref|YP_002926183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli BW2952] gi|253773843|ref|YP_003036674.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161240|ref|YP_003044348.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli B str. REL606] gi|256018611|ref|ZP_05432476.1| tRNA-specific 2-thiouridylase MnmA [Shigella sp. D9] gi|256023169|ref|ZP_05437034.1| tRNA-specific 2-thiouridylase MnmA [Escherichia sp. 4_1_40B] gi|260843449|ref|YP_003221227.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Escherichia coli O103:H2 str. 12009] gi|260854815|ref|YP_003228706.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Escherichia coli O26:H11 str. 11368] gi|260867562|ref|YP_003233964.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Escherichia coli O111:H- str. 11128] gi|293433421|ref|ZP_06661849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli B088] gi|297518453|ref|ZP_06936839.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli OP50] gi|301029558|ref|ZP_07192636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 196-1] gi|307137768|ref|ZP_07497124.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli H736] gi|307310090|ref|ZP_07589740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli W] gi|331667534|ref|ZP_08368398.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli TA271] gi|8039808|sp|P25745|MNMA_ECOLI RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205816868|sp|A7ZZ88|MNMA_ECOHS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205816869|sp|B1XA43|MNMA_ECODH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205816870|sp|A7ZKS3|MNMA_ECO24 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205816881|sp|B1IUD4|MNMA_ECOLC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|4062697|dbj|BAA35955.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Escherichia coli str. K12 substr. W3110] gi|87081837|gb|AAC74217.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|157066337|gb|ABV05592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli HS] gi|157078733|gb|ABV18441.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli E24377A] gi|169755402|gb|ACA78101.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli ATCC 8739] gi|169888619|gb|ACB02326.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|190901622|gb|EDV61379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli B7A] gi|192926109|gb|EDV80751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli E22] gi|192954978|gb|EDV85481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli E110019] gi|194423931|gb|EDX39919.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 101-1] gi|209911649|dbj|BAG76723.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Escherichia coli SE11] gi|218351399|emb|CAU97105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 55989] gi|218360479|emb|CAQ98033.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli IAI1] gi|238863704|gb|ACR65702.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli BW2952] gi|242376935|emb|CAQ31656.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli BL21(DE3)] gi|253324887|gb|ACT29489.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973141|gb|ACT38812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli B str. REL606] gi|253977355|gb|ACT43025.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli BL21(DE3)] gi|257753464|dbj|BAI24966.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257758596|dbj|BAI30093.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Escherichia coli O103:H2 str. 12009] gi|257763918|dbj|BAI35413.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Escherichia coli O111:H- str. 11128] gi|260449728|gb|ACX40150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli DH1] gi|291324240|gb|EFE63662.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli B088] gi|299877553|gb|EFI85764.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 196-1] gi|306909808|gb|EFN40302.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli W] gi|309701457|emb|CBJ00761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli ETEC H10407] gi|315060410|gb|ADT74737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli W] gi|315616009|gb|EFU96635.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 3431] gi|320175639|gb|EFW50731.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Shigella dysenteriae CDC 74-1112] gi|320184390|gb|EFW59201.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Shigella flexneri CDC 796-83] gi|320201029|gb|EFW75613.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Escherichia coli EC4100B] gi|323153179|gb|EFZ39443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli EPECa14] gi|323179331|gb|EFZ64901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 1180] gi|323185683|gb|EFZ71044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 1357] gi|323379030|gb|ADX51298.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli KO11] gi|323937873|gb|EGB34137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli E1520] gi|323942603|gb|EGB38770.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli E482] gi|323962732|gb|EGB58310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli H489] gi|323973277|gb|EGB68466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli TA007] gi|324117296|gb|EGC11203.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli E1167] gi|331065119|gb|EGI37014.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli TA271] Length = 368 Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 131/373 (35%), Positives = 205/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G++ Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ EP +VV D +N+ V+ E + + L ++++W+ Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVD 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 F + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY--- 349 Query: 372 SNEARVLGGGIIS 384 N LGGGII Sbjct: 350 -NGEVCLGGGIIE 361 >gi|312881247|ref|ZP_07741045.1| tRNA-specific 2-thiouridylase MnmA [Vibrio caribbenthicus ATCC BAA-2122] gi|309371139|gb|EFP98593.1| tRNA-specific 2-thiouridylase MnmA [Vibrio caribbenthicus ATCC BAA-2122] Length = 369 Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 125/377 (33%), Positives = 195/377 (51%), Gaps = 32/377 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + + C A +D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNW---EEDDNEDYCTAAEDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L L AD Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLDFADDVLEADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R D ++ M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 125 IAMGHYVRRSCIESD---QKPQMLRGLDGNKDQSYFLYTLSHEQIGRSLFPVGELEKPEV 181 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A K DS ICF+ + K+ D + + A G I G+ +G H G++ Sbjct: 182 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSKYLP--AQPGKIETPEGKEIGEHQGLM 239 Query: 261 NYTIGQRRGLGVAMG-------EPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLREI 308 +T+GQR+GL + EP +V DK+ R ++ L+ + ++ Sbjct: 240 YHTLGQRKGLHIGGQKGGGGNEEPWYVA--DKDLKRNVLIAVQGADHPLLKSEGLIASQL 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVF 367 +W+ +V KC VK R Q+ +P + D+G + V F+ +V V GQ+ VF Sbjct: 298 HWVD----RSPLVSEIKCSVKTRYRQNDIPCTIVPIDNGSIKVIFDNPQVAVTPGQSAVF 353 Query: 368 YTSDSNEARVLGGGIIS 384 Y D LGGGII Sbjct: 354 YQGDV----CLGGGIIE 366 >gi|304397251|ref|ZP_07379130.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pantoea sp. aB] gi|304355400|gb|EFM19768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pantoea sp. aB] Length = 370 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 128/373 (34%), Positives = 198/373 (53%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAADDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGMKLHKVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADF 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R DG+ + + R +D +DQSYFL+ + QQ+ FP+G+++K V Sbjct: 125 IATGHYVRRHDV---DGQSQ--LLRGLDGNKDQSYFLYTLSHQQIAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ D + R A G+I GQI+G H G++ Sbjct: 180 RRIAEQLDLITAKKKDSTGICFIGERKFRDFLARYLP--AQPGEIETTEGQIVGEHQGLM 237 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +T+GQR+GLG+ + +P +VV D +R+IV G L + ++++W+ Sbjct: 238 YHTLGQRKGLGIGGLKESKDDPWYVVDKDVARNRLIVAQGGDHPRLMSVGLIAQQLHWVD 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + +C VK R Q +P + DD + V F++ V GQ+ VFY D Sbjct: 298 ----RQPITAPLRCTVKTRYRQTDIPCEIIPHGDDRIEVRFDEPVAAVTPGQSAVFYLGD 353 Query: 372 SNEARVLGGGIIS 384 LGGGII Sbjct: 354 V----CLGGGIIE 362 >gi|296435803|gb|ADH17977.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis G/9768] gi|296437663|gb|ADH19824.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis G/11074] gi|297140162|gb|ADH96920.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis G/9301] Length = 358 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 134/367 (36%), Positives = 195/367 (53%), Gaps = 27/367 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 V+VAMSGGVDSSVVA LLK+ G Y+V+G+ ++ + + + G C A +D D R+ + Sbjct: 5 VIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN---GECTATKDFRDVERIAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +Y + + ++ V F YA G TP P V CNR +KF L R+L D L Sbjct: 62 QLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGDFL 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R G DG + R +D +DQSYFL T + L ++ FPLG M K VR Sbjct: 122 ATGHYCRG----GADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTEVR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHNGII 260 +A+E GL A K DS ICF+ + + +++ A GDI+ + Q++GRH G Sbjct: 175 RIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADSP--GDIIDFDTQQVVGRHEGAH 232 Query: 261 NYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYL-REINWLGDGLF 316 YTIGQRRGL + M +P +V+ ++KN ++ G L + L +E+NW Sbjct: 233 YYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYRQELLAKELNWFVP--L 290 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 ++ ++ K V+ RS + V+ D V V F+ V GQ FY D Sbjct: 291 QEPMICSAK--VRYRSPNEKCSVY-PLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI---- 343 Query: 377 VLGGGII 383 LGGG+I Sbjct: 344 CLGGGVI 350 >gi|110805161|ref|YP_688681.1| tRNA-specific 2-thiouridylase MnmA [Shigella flexneri 5 str. 8401] gi|161485922|ref|NP_707062.2| tRNA-specific 2-thiouridylase MnmA [Shigella flexneri 2a str. 301] gi|161486505|ref|NP_836851.2| tRNA-specific 2-thiouridylase MnmA [Shigella flexneri 2a str. 2457T] gi|123342960|sp|Q0T5N9|MNMA_SHIF8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205828969|sp|Q83LF7|MNMA_SHIFL RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|110614709|gb|ABF03376.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|313650389|gb|EFS14796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shigella flexneri 2a str. 2457T] Length = 368 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 131/373 (35%), Positives = 205/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G++ Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ EP +VV D +N+ V+ E + + L ++++W+ Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVD 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 F + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIKVIFDEPVAAVTPGQSAVFY--- 349 Query: 372 SNEARVLGGGIIS 384 N LGGGII Sbjct: 350 -NGEVCLGGGIIE 361 >gi|114793688|pdb|2DER|A Chain A, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And Trna-Glu In The Initial Trna Binding State gi|114793689|pdb|2DER|B Chain B, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And Trna-Glu In The Initial Trna Binding State gi|114793692|pdb|2DET|A Chain A, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And Trna-Glu In The Pre-Reaction State gi|114793694|pdb|2DEU|A Chain A, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And Trna-Glu In The Adenylated Intermediate State gi|114793695|pdb|2DEU|B Chain B, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And Trna-Glu In The Adenylated Intermediate State Length = 380 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 131/373 (35%), Positives = 205/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 19 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 75 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 76 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 135 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 136 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 190 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G++ Sbjct: 191 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 248 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ EP +VV D +N+ V+ E + + L ++++W+ Sbjct: 249 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVD 308 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 F + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 309 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY--- 361 Query: 372 SNEARVLGGGIIS 384 N LGGGII Sbjct: 362 -NGEVCLGGGIIE 373 >gi|161950103|ref|YP_403605.2| tRNA-specific 2-thiouridylase MnmA [Shigella dysenteriae Sd197] gi|309788203|ref|ZP_07682809.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shigella dysenteriae 1617] gi|205821961|sp|Q32EZ1|MNMA_SHIDS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|308924055|gb|EFP69556.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shigella dysenteriae 1617] Length = 368 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 131/373 (35%), Positives = 205/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAKSLFPVGELEKPQV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G++ Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ EP +VV D +N+ ++ E + I L ++++W+ Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSIGLIAQQLHWVD 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 F + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY--- 349 Query: 372 SNEARVLGGGIIS 384 N LGGGII Sbjct: 350 -NGEVCLGGGIIE 361 >gi|15643286|ref|NP_228330.1| tRNA-specific 2-thiouridylase MnmA [Thermotoga maritima MSB8] gi|8134745|sp|Q9WYZ0|MNMA_THEMA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|4981033|gb|AAD35605.1|AE001728_6 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermotoga maritima MSB8] Length = 358 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 125/369 (33%), Positives = 186/369 (50%), Gaps = 20/369 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS---CCAGQDVYDAR 77 M+V VA+SGGVDS+V LL ++G++V ++ K++ CC+ D DA Sbjct: 1 MKVGVALSGGVDSAVALYLLLKEGHEVKAFHMKTKEDEFFIKKEIKKKVCCSPSDTADAM 60 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 R+ + V + D +E FR VI PF G TP PC CNR VKF L+ G Sbjct: 61 RIAHFLGVEIEIVDVKEIFREKVIEPFKRDLLKGLTPNPCAHCNRFVKFGYLMDYVLNQG 120 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D A+GHY R + R+++ + +DL++DQSYFL ++ L FP G K Sbjct: 121 FDAFASGHYARIEF---SEKYGRKVIKKGVDLKKDQSYFLARIEPWRIERLIFPNGIYTK 177 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRH 256 E +R +A E G+ +A K +SQD+CF+ G + +K + GI L +GDI+ G+++GRH Sbjct: 178 EEIRKIAEEAGIHVAKKQESQDVCFIPDGSIENFLK--DEGITLKDGDIITPEGEVVGRH 235 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G YTIGQR+G + G +V + V+V E + + + W + Sbjct: 236 FGYPLYTIGQRKGFKIEKFGRRYYVRGKIPEKNVVVVSDLEDVFFSGLIAEDPVWHVE-- 293 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 V + F+C ++R + P V+ D+ V V FEK V GQ FY D+ Sbjct: 294 ----VPEEFRCVCRVRKKSEEAPAVVKVKDNEVEVSFEKKVFAVTPGQIAAFYDGDT--- 346 Query: 376 RVLGGGIIS 384 +LGG II Sbjct: 347 -LLGGAIIK 354 >gi|311111740|ref|YP_003982962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rothia dentocariosa ATCC 17931] gi|310943234|gb|ADP39528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rothia dentocariosa ATCC 17931] Length = 403 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 137/396 (34%), Positives = 191/396 (48%), Gaps = 44/396 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+++ AMSGGVDS+V AA G++V+GV L L + + R GS CC +D DARR Sbjct: 1 MKILAAMSGGVDSAVAAARAVEAGHEVVGVHLAL-SRMPGTLRTGSRGCCTLEDSMDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC + + +V+D+ ERF+ V+ F + Y AG TP PC+ CN +KF+ LL LG Sbjct: 60 VCAQLGIPFFVWDFSERFKEDVVDDFIAEYEAGRTPNPCMRCNEKIKFAALLERAVSLGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197 D + TGHY +R+ DDG R + R D +DQSY L T +QL FPL K Sbjct: 120 DAVVTGHY--ARVITNDDGNRE--LHRAADWAKDQSYVLGVLTHEQLKHAWFPLATTPSK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRH 256 VR A G +A K DS DICF+ +G D + I + G I +G ++G H Sbjct: 176 AEVRAEAERRGFSVAKKPDSYDICFIPEG---DTRAWLGEHIQMRPGMIKDTSGNVVGEH 232 Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G +T+GQR+GL + G+P FV+ + ++ VIVG RE L + I W G Sbjct: 233 PGAQGFTVGQRKGLALGTPAPDGKPRFVLEIRPKTNEVIVGSRELLSIDEIRGIRATWAG 292 Query: 313 DGLFEDAVV-----------DGFKCFVKIRSSQDPV--PVFVQRNDDG-----------V 348 + E + F ++R+ DPV ++ +D Sbjct: 293 IPVPEAEHFLAQEPKLGVRSETFDVTAQVRAHADPVRGTAHLEWAEDTDAETPGKLRVET 352 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 V GVA GQ V Y RVLG I+ Sbjct: 353 VVRLHDGLFGVAPGQTMVLYQG----TRVLGQSTIA 384 >gi|160903153|ref|YP_001568734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Petrotoga mobilis SJ95] gi|205816886|sp|A9BIS3|MNMA_PETMO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|160360797|gb|ABX32411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Petrotoga mobilis SJ95] Length = 367 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 121/371 (32%), Positives = 193/371 (52%), Gaps = 19/371 (5%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS---KRKGSCCAGQDVYDA 76 + +V++ MSGGVDSSV A LLK Y VIG+ + + S ++K CC+ D DA Sbjct: 3 NKKVLMLMSGGVDSSVAAYLLKEQNYHVIGLHFKTVSDVVFSLIPEKKKVCCSPSDTQDA 62 Query: 77 RRVCDTINVSHY-VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 ++ D +++ + + D ++ F+ +I F +Y G+TP PC+ CNR KF L + Sbjct: 63 LKIADKLDLDDFQIVDIKKEFKEKIIDYFIKTYKEGKTPNPCMLCNRFFKFGKALEIAHS 122 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 GAD +++GHY+ + I+ + +D +DQSYFL + L L FPLG+M Sbjct: 123 YGADWVSSGHYLIKEY---SNKYSTYIIKKGVDQYKDQSYFLSYIDKNTLPKLHFPLGNM 179 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K +RD+A ++GL +A+K DSQ++CF+ Y +K N EG + L G +G Sbjct: 180 YKVEIRDIANKIGLSVANKPDSQELCFIPDNDYRRFLKE-NGVTTEEGKVYDLEGNEIGT 238 Query: 256 HNGIINYTIGQRRGLGVAMGE--PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G +NYTIGQR G+ L V + + +IV P E + + ++ +N+ D Sbjct: 239 HTGYMNYTIGQRSGISYYKNANVKLHVYKIFPQKNVLIVAPTEEMYSKELIVQNVNFFVD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F++ ++GF C V+ +S + P V + D + V F++ V GQ Y Sbjct: 299 --FKE--IEGF-CRVRKKSEEKPA-VVKKIADHTLKVSFKEPIFAVTPGQFATIY---DE 349 Query: 374 EARVLGGGIIS 384 VL G+I+ Sbjct: 350 SGVVLASGVIN 360 >gi|293409499|ref|ZP_06653075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli B354] gi|291469967|gb|EFF12451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli B354] Length = 395 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 130/389 (33%), Positives = 208/389 (53%), Gaps = 28/389 (7%) Query: 6 ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65 A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + Sbjct: 18 ALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY-- 75 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +K Sbjct: 76 -CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIK 134 Query: 126 FSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 F L + LGAD +ATGHY+R DGK R + R +D +DQSYFL+ + +Q Sbjct: 135 FKAFLEFAAEDLGADYIATGHYVRR---ADVDGKSR--LLRGLDSNKDQSYFLYTLSHEQ 189 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 + FP+G+++K VR +A ++GL A K DS ICF+ + K+ + + R A G Sbjct: 190 IAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGK 247 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESL 298 I+ ++G +G H G++ +T+GQR+GLG+ EP +VV D +N+ ++ E Sbjct: 248 IITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHP 307 Query: 299 EVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKS 355 + + L ++++W+ F + +C VK R Q +P V+ +DD + V F++ Sbjct: 308 RLMSVGLIAQQLHWVDREPFTSTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEP 363 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY N LGGGII Sbjct: 364 VAAVTPGQSAVFY----NGEVCLGGGIIE 388 >gi|157146082|ref|YP_001453401.1| tRNA-specific 2-thiouridylase MnmA [Citrobacter koseri ATCC BAA-895] gi|157083287|gb|ABV12965.1| hypothetical protein CKO_01838 [Citrobacter koseri ATCC BAA-895] Length = 383 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 136/396 (34%), Positives = 215/396 (54%), Gaps = 32/396 (8%) Query: 1 MVVSEATRLN--SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR 58 M+ A + N S+ + ++PK +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MIEYAALKFNVVSIPMSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEED 58 Query: 59 KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118 + C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + Sbjct: 59 DGEE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDI 115 Query: 119 DCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177 CN+ +KF L + LGAD +ATGHY+R R V DGK R + R +D +DQSYFL Sbjct: 116 LCNKEIKFKAFLEFAAEDLGADYIATGHYVR-RADV--DGKSR--LLRGLDGNKDQSYFL 170 Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA 237 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + + R Sbjct: 171 YTLGHEQIAQSLFPVGELEKPQVRKIAEDLGLITAKKKDSTGICFIGERKFREFLGRYLP 230 Query: 238 GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVI 291 A G I+ ++G +G+H G++ +T+GQR+GLG+ +P +VV D +N+ V+ Sbjct: 231 --AQPGKIITVDGDEIGQHQGLMYHTLGQRKGLGIGGTKEGTEDPWYVVDKDVENNILVV 288 Query: 292 VGPRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-V 348 E + + L ++++W+ F + +C VK R Q +P V+ DD + Sbjct: 289 AQGHEHPRLMSVGLIAQQLHWVDREPFSGTL----RCTVKTRYRQTDIPCTVKALDDERI 344 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 V F++ V GQ+ VFY N LGGGII Sbjct: 345 EVIFDEPVAAVTPGQSAVFY----NGEVCLGGGIIE 376 >gi|148358920|ref|YP_001250127.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase [Legionella pneumophila str. Corby] gi|296106968|ref|YP_003618668.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Legionella pneumophila 2300/99 Alcoy] gi|205816878|sp|A5IBN1|MNMA_LEGPC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|148280693|gb|ABQ54781.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase [Legionella pneumophila str. Corby] gi|295648869|gb|ADG24716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Legionella pneumophila 2300/99 Alcoy] Length = 361 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 122/371 (32%), Positives = 191/371 (51%), Gaps = 27/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK GY V G+ ++ + + C A +D+ DA+ VC+ Sbjct: 4 KVIVGMSGGVDSSVAAWLLKEQGYQVEGLFMKNW---EQDDHNDYCPAAKDLADAQAVCN 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + ++ + + + V F S Y G TP P V CN+ +KF+ L+ LGAD + Sbjct: 61 QLRIPLHTVNFSKEYWDRVFAYFLSEYEKGRTPNPDVLCNKEIKFNAFLNHALNLGADYI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY ++ + G G + + D E+DQ+YFL A + L FP+GD K +R Sbjct: 121 ATGHYAKNTI-EGSIG----YLFKAKDREKDQTYFLHAVEPEALSKTIFPIGDFTKPQIR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 + A+++GL K DS ICF+ + ++ + +A G+I G+ LG+H+G++ Sbjct: 176 EFAKQLGLVTHAKKDSTGICFIGEKRFKTFLNEFI--LAKPGEIKSTGGKTLGQHDGLMF 233 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313 YT+GQR+GLG+ + EP +VV D S+ + V L + I+WL D Sbjct: 234 YTLGQRQGLGIGGLQNSTDEPWYVVDKDIASNTLYVAQGSQHPMLYSQGLICGPIHWLAD 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDS 372 +E+ + CF K R Q + D+ + YV F + + GQ VFY + Sbjct: 294 --YENHLP--LTCFAKTRYRQTDQACMISPPDNNLHYVMFSSPQRAITPGQFIVFYEKN- 348 Query: 373 NEARVLGGGII 383 + LGG I Sbjct: 349 ---QCLGGATI 356 >gi|161984923|ref|YP_408327.2| tRNA-specific 2-thiouridylase MnmA [Shigella boydii Sb227] gi|205821943|sp|Q31ZK9|MNMA_SHIBS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|332094391|gb|EGI99440.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shigella boydii 3594-74] Length = 368 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 131/373 (35%), Positives = 205/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G++ Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ EP +VV D +N+ V+ E + + L ++++W+ Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVD 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 F + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 297 REPFTGTM----RCSVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY--- 349 Query: 372 SNEARVLGGGIIS 384 N LGGGII Sbjct: 350 -NGEVCLGGGIIE 361 >gi|308186449|ref|YP_003930580.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Pantoea vagans C9-1] gi|308056959|gb|ADO09131.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Pantoea vagans C9-1] Length = 370 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 127/373 (34%), Positives = 200/373 (53%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAADDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGMKLHKVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADF 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + DG+ + + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 125 IATGHYVRRKDV---DGQSQ--LLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ D + R A G+I GQI+G H G++ Sbjct: 180 RRIAEQLDLITAKKKDSTGICFIGERKFRDFLARYLP--AQPGEIETTEGQIVGEHQGLM 237 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +T+GQR+GLG+ + +P +VV D +R+IV G L + ++++W+ Sbjct: 238 YHTLGQRKGLGIGGLKESKDDPWYVVDKDVARNRLIVAQGGDHPRLMSVGLIAQQLHWVD 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + +C VK R Q +P + + DD + V F++ V GQ+ VFY D Sbjct: 298 ----RQPITAPLRCTVKTRYRQTDIPCEIIPQGDDRIEVRFDEPVAAVTPGQSAVFYLGD 353 Query: 372 SNEARVLGGGIIS 384 LGGGII Sbjct: 354 V----CLGGGIIE 362 >gi|170682526|ref|YP_001744044.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli SMS-3-5] gi|218549144|ref|YP_002382935.1| tRNA-specific 2-thiouridylase MnmA [Escherichia fergusonii ATCC 35469] gi|205816880|sp|B1LI10|MNMA_ECOSM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|170520244|gb|ACB18422.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli SMS-3-5] gi|218356685|emb|CAQ89312.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia fergusonii ATCC 35469] gi|323967072|gb|EGB62498.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli M863] gi|323976496|gb|EGB71584.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli TW10509] gi|324113924|gb|EGC07898.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia fergusonii B253] gi|325497565|gb|EGC95424.1| orf, hypothetical protein [Escherichia fergusonii ECD227] gi|327253837|gb|EGE65466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli STEC_7v] Length = 368 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 130/373 (34%), Positives = 205/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G++ Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ EP +VV D +N+ ++ E + + L ++++W+ Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVD 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 F + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY--- 349 Query: 372 SNEARVLGGGIIS 384 N LGGGII Sbjct: 350 -NGEVCLGGGIIE 361 >gi|218700344|ref|YP_002407973.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli IAI39] gi|218704607|ref|YP_002412126.1| tRNA -specific 2-thiouridylase MnmA [Escherichia coli UMN026] gi|218370330|emb|CAR18133.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli IAI39] gi|218431704|emb|CAR12586.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli UMN026] gi|284920959|emb|CBG34022.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 042] gi|330910947|gb|EGH39457.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli AA86] Length = 368 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 130/373 (34%), Positives = 205/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G++ Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ EP +VV D +N+ ++ E + + L ++++W+ Sbjct: 237 YHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVD 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 F + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY--- 349 Query: 372 SNEARVLGGGIIS 384 N LGGGII Sbjct: 350 -NGEVCLGGGIIE 361 >gi|326623649|gb|EGE29994.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628111|gb|EGE34454.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 383 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 134/396 (33%), Positives = 215/396 (54%), Gaps = 32/396 (8%) Query: 1 MVVSEATRLN--SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR 58 MV A + N S+ + ++PK +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MVEYAALKFNVASIPMSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEED 58 Query: 59 KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118 + C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + Sbjct: 59 DGEEY---CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDI 115 Query: 119 DCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177 CN+ +KF L + LGAD +ATGHY+R R V +GK R + R +D +DQSYFL Sbjct: 116 LCNKEIKFKAFLEFAAEDLGADYIATGHYVR-RADV--NGKSR--LLRGLDGNKDQSYFL 170 Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA 237 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R Sbjct: 171 YTLGHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP 230 Query: 238 GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVI 291 A G I+ ++G +G H G++ +T+GQR+GLG+ +P +VV D +N+ ++ Sbjct: 231 --AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIV 288 Query: 292 VGPRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGV 348 E + + L ++++W+ F + +C VK R Q +P + +DD + Sbjct: 289 AQGHEHPRLMSVGLIAQQLHWVDREPFTGTL----RCTVKTRYRQTDIPCTINALDDDRI 344 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 V F++ V GQ+ VFY+ + LGGGII Sbjct: 345 EVIFDEPVAAVTPGQSAVFYSGEV----CLGGGIIE 376 >gi|91210289|ref|YP_540275.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli UTI89] gi|117623318|ref|YP_852231.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli APEC O1] gi|237706881|ref|ZP_04537362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia sp. 3_2_53FAA] gi|300982382|ref|ZP_07176080.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 200-1] gi|91071863|gb|ABE06744.1| probable ATPase YcfB [Escherichia coli UTI89] gi|115512442|gb|ABJ00517.1| putative ATPase [Escherichia coli APEC O1] gi|226898091|gb|EEH84350.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia sp. 3_2_53FAA] gi|300307219|gb|EFJ61739.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 200-1] gi|315287470|gb|EFU46881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 110-3] gi|315296602|gb|EFU55897.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 16-3] gi|324013226|gb|EGB82445.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 60-1] Length = 383 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 133/394 (33%), Positives = 211/394 (53%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 61 EEY---CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L + LGAD +ATGHY+R R V DGK R + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + + R Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVG 293 A G I+ ++G +G H G++ +T+GQR+GLG+ EP +VV D +N+ ++ Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQ 290 Query: 294 PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYV 350 E + + L ++++W+ F + +C VK R Q +P V+ D D + V Sbjct: 291 GHEHPRLMSVGLIAQQLHWVDREPFTGTM----RCTVKTRYRQTDIPCTVKALDADRIEV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY N LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFY----NGEVCLGGGIIE 376 >gi|38703944|ref|NP_309632.2| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str. Sakai] gi|161367616|ref|NP_287347.2| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 EDL933] gi|168749736|ref|ZP_02774758.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4113] gi|168756472|ref|ZP_02781479.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4401] gi|168762550|ref|ZP_02787557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4501] gi|168771001|ref|ZP_02796008.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4486] gi|168776054|ref|ZP_02801061.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4196] gi|168782470|ref|ZP_02807477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4076] gi|168787608|ref|ZP_02812615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC869] gi|168800455|ref|ZP_02825462.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC508] gi|195938765|ref|ZP_03084147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4024] gi|208808537|ref|ZP_03250874.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4206] gi|208814775|ref|ZP_03255954.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4045] gi|208822542|ref|ZP_03262861.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4042] gi|209397379|ref|YP_002270050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4115] gi|217328487|ref|ZP_03444569.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. TW14588] gi|254792593|ref|YP_003077430.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str. TW14359] gi|261227234|ref|ZP_05941515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261258759|ref|ZP_05951292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|291282168|ref|YP_003498986.1| putative tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Escherichia coli O55:H7 str. CB9615] gi|24638314|sp|Q8X735|MNMA_ECO57 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|187768490|gb|EDU32334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4196] gi|188016000|gb|EDU54122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4113] gi|189000055|gb|EDU69041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4076] gi|189356337|gb|EDU74756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4401] gi|189360141|gb|EDU78560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4486] gi|189367117|gb|EDU85533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4501] gi|189372405|gb|EDU90821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC869] gi|189377259|gb|EDU95675.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC508] gi|208728338|gb|EDZ77939.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4206] gi|208731423|gb|EDZ80111.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4045] gi|208738027|gb|EDZ85710.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4042] gi|209158779|gb|ACI36212.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4115] gi|217318914|gb|EEC27340.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. TW14588] gi|254591993|gb|ACT71354.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|290762041|gb|ADD56002.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Escherichia coli O55:H7 str. CB9615] gi|320187860|gb|EFW62530.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Escherichia coli O157:H7 str. EC1212] gi|320637601|gb|EFX07401.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str. G5101] gi|320643161|gb|EFX12362.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H- str. 493-89] gi|320648098|gb|EFX16774.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H- str. H 2687] gi|320653931|gb|EFX22005.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659411|gb|EFX26980.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O55:H7 str. USDA 5905] gi|320664548|gb|EFX31699.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str. LSU-61] gi|326339412|gb|EGD63224.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str. 1044] gi|326341465|gb|EGD65256.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Escherichia coli O157:H7 str. 1125] Length = 368 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 130/373 (34%), Positives = 205/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G++ Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ EP +VV D +N+ ++ E + + L ++++W+ Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVD 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 F + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY--- 349 Query: 372 SNEARVLGGGIIS 384 N LGGGII Sbjct: 350 -NGEVCLGGGIIE 361 >gi|324005950|gb|EGB75169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 57-2] Length = 383 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 137/396 (34%), Positives = 212/396 (53%), Gaps = 32/396 (8%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 61 EEY---CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L + LGAD +ATGHY+R R V DGK R + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + + R Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG- 293 A G I+ ++G +G H G++ +T+GQR+GLG+ EP +VV D ++ +IV Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQ 290 Query: 294 ----PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGV 348 PR + V I L +++W+ F + +C VK R Q +P V+ D D + Sbjct: 291 GHEHPR-LMSVGLIAL-QLHWVDREPFTGTM----RCTVKTRYRQTDIPCTVKALDADRI 344 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 V F++ V GQ+ VFY N LGGGII Sbjct: 345 EVIFDEPVAAVTPGQSAVFY----NGEVCLGGGIIE 376 >gi|291617068|ref|YP_003519810.1| TrmU [Pantoea ananatis LMG 20103] gi|291152098|gb|ADD76682.1| TrmU [Pantoea ananatis LMG 20103] Length = 376 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 126/373 (33%), Positives = 199/373 (53%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 14 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAADDLADAQAVCD 70 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 71 KLGIKLHKVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADF 130 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + D R + R D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 131 IATGHYVRRQ-----DSDGRSHLLRGRDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPEV 185 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+ L A K DS ICF+ + K+ + + R A G+I ++GQ++G H G++ Sbjct: 186 RRIAEELELITAKKKDSTGICFIGERKFREFLARYLP--AQPGEIETVDGQVVGEHQGLM 243 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +T+GQR+GLG+ + +P +VV D +R+IV G L + ++++W+ Sbjct: 244 YHTLGQRKGLGIGGMKESKDDPWYVVDKDVARNRLIVAQGGDHPRLMSVGLIAQQLHWVD 303 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + +C VK R Q +P + + DD + V F++ V GQ+ VFY D Sbjct: 304 ----RQPLRAPLRCTVKTRYRQTDIPCEIIPQGDDKIEVRFDEPVAAVTPGQSAVFYLGD 359 Query: 372 SNEARVLGGGIIS 384 LGGGII Sbjct: 360 V----CLGGGIIE 368 >gi|161507327|ref|YP_001577281.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus helveticus DPC 4571] gi|205816860|sp|A8YUQ2|MNMA_LACH4 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|160348316|gb|ABX26990.1| tRNA-methyltransferase [Lactobacillus helveticus DPC 4571] Length = 375 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 132/378 (34%), Positives = 189/378 (50%), Gaps = 25/378 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ S G C A +D D ++V D Sbjct: 8 RVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDS---GVCTATEDYEDVKKVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y G TP P V CN +KF L L AD + Sbjct: 65 KIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLDFAMDLDADYI 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 A GHY ++ D M RP D +DQ+YFL Q Q+ + FPL ++ K VR Sbjct: 125 AMGHYAKTV----KDADGLTHMMRPKDGNKDQTYFLSQLNQDQIKKVIFPLANLTKPQVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A GL A K DS ICF+ + + + A G +V +G+++G H G++ Sbjct: 181 EIALANGLATAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGKVVGEHAGLMY 238 Query: 262 YTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF- 316 YTIGQR+GLG+ +P FVV D + +IV + + +Y + F Sbjct: 239 YTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSKLLYASRLKASDMSFFT 296 Query: 317 --EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD--FEKSEVGVASGQACVFYTSDS 372 D V+ F C K R Q V V V+ + D D F++ V GQA V Y + Sbjct: 297 GKPDHDVE-FHCSAKFRYRQCDVGVTVKYHADDNTADVYFDEPARAVTPGQALVLYQGE- 354 Query: 373 NEARVLGGGIISGSKRSD 390 LGGG I + + D Sbjct: 355 ---ECLGGGNIDAAYQED 369 >gi|56419544|ref|YP_146862.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus kaustophilus HTA426] gi|81347762|sp|Q5L186|MNMA1_GEOKA RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 gi|56379386|dbj|BAD75294.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Geobacillus kaustophilus HTA426] Length = 370 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 133/380 (35%), Positives = 197/380 (51%), Gaps = 25/380 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K RVVV MSGGVDSSV A LLK++GYDVIGV ++ ++ + G C A +D D +R Sbjct: 2 KKKRVVVGMSGGVDSSVAAYLLKQEGYDVIGVFMKNWDD---TNDDGVCTATEDYEDVKR 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + +Y ++E+ + + V F G TP P V CN +KF + L A Sbjct: 59 VANQLGIPYYSVNFEKEYWDRVFTYFIDELKRGRTPNPDVLCNTEIKFKAFVDYALSLDA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R G + + R D +DQ+YFL T + L + FP+G++ K+ Sbjct: 119 DYIATGHYARINRENG-----QIALLRGKDPNKDQTYFLSQLTAEHLSKVLFPIGELTKD 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A+E+ L A+K DS ICF+ + + + +K N A G+I L+G++LG H+G Sbjct: 174 EVRKIAQELNLVNANKKDSTGICFIGERNFKNFLK--NYLPAQPGEIRSLDGEVLGTHDG 231 Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 ++ YTIGQR+ G GEP +VV D ++ ++V +L + I+++ Sbjct: 232 LMYYTIGQRKGLGIGGKGTGEPWYVVDKDLENNVLLVAQGKNHPALFSTGLIASNISFIN 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371 D F C K R Q+ V V +G +V+FEK V GQ VFY +D Sbjct: 292 G----DVRPRTFACTAKFRYRQEDQKVTVHIRPNGTAFVEFEKPVKAVTPGQVAVFYDND 347 Query: 372 SNEARVLGGGIISGSKRSDA 391 LG II + DA Sbjct: 348 V----CLGSAIIDEVIKMDA 363 >gi|237741407|ref|ZP_04571888.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 4_1_13] gi|229430939|gb|EEO41151.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 4_1_13] Length = 343 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 117/365 (32%), Positives = 195/365 (53%), Gaps = 28/365 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV+ MSGGVDSSV A LLK GY+VIGVTL + + +D+ DA++VCD Sbjct: 3 KVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENS----------KDIEDAKKVCD 52 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H V + + F N VI F Y G TP PC+ C+ +KF L + + A+ + Sbjct: 53 KLGIIHKVVNIRKDFENIVIKYFLDGYKTGITPSPCIICDDEIKFKILFDIADKYKAEYV 112 Query: 142 ATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 ATGHY S+++ + ++ + +DQSY L+ + +L L FPL D K+ Sbjct: 113 ATGHYTSVEYSKIF------SKYLLKSVHSIIKDQSYMLYRLSSNKLERLIFPLKDYSKQ 166 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A ++GL+I +K DSQ +CF ++G Y + +K ++G+ + +G ILG+H G Sbjct: 167 EIREIALKIGLEIHNKKDSQGVCFAKEG-YKEFLKENLKDEIVKGNYIDKDGNILGQHEG 225 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 YTIGQRRGLG+ + +P+F+ + ++ +++G L ++ L IN +E Sbjct: 226 YQLYTIGQRRGLGINLSKPIFITEIKPQTNEIVLGEFSELFTDKVEL--INSKFSVEYEK 283 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 ++ + + R S + ++ + +Y + + A GQ VF+ + V+ Sbjct: 284 --LENLELLARPRFSSTGFYGKLIKDKNKIYFKYNEENAHNAKGQHIVFFY----DGFVV 337 Query: 379 GGGII 383 GGG I Sbjct: 338 GGGEI 342 >gi|300723601|ref|YP_003712906.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xenorhabdus nematophila ATCC 19061] gi|297630123|emb|CBJ90760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xenorhabdus nematophila ATCC 19061] Length = 367 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 124/373 (33%), Positives = 202/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAADDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGIELHTINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R D + R +D +DQSYFL+ + QQ+ FP+G+++K V Sbjct: 125 IATGHYVRRR-----DADGISQLLRGLDGNKDQSYFLYTLSHQQIAKSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+GL A K DS ICF+ + K+ D + R A G IV +GQ +G+H+G++ Sbjct: 180 RRIAEEIGLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVTEDGQTIGQHSGLM 237 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ +P +VV + +N++ ++ E + + L ++++W+ Sbjct: 238 YHTLGQRKGLGIGGTKDGSEDPWYVVDKELENNTLIVAQGHEHPRLMSVGLIAQQLHWVN 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + + +C VK R Q +P + ++D + V F+ V GQ+ VFY + Sbjct: 298 RQSLKTEI----RCVVKTRYRQHDIPCTVIPLSEDKIEVRFDSPVAAVTPGQSAVFYQDE 353 Query: 372 SNEARVLGGGIIS 384 LGGG+I Sbjct: 354 I----CLGGGVIE 362 >gi|254390807|ref|ZP_05006019.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces clavuligerus ATCC 27064] gi|197704506|gb|EDY50318.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces clavuligerus ATCC 27064] Length = 367 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 137/351 (39%), Positives = 187/351 (53%), Gaps = 25/351 (7%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYD 75 P+ +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G+ CC +D D Sbjct: 18 PRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRD 76 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 ARR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 77 ARRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALA 136 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD- 194 LG D + TGHY + + DG R + R D+ +DQSY L ++QL FPLGD Sbjct: 137 LGFDAVCTGHY--ATVVTLPDGGRE--LHRASDMAKDQSYVLGVLDERQLAHAMFPLGDT 192 Query: 195 -MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQI 252 K+ +R A GL +A K DS DICF+ G + R+ EGDIV +G Sbjct: 193 LTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGRA---EGDIVDESGTR 249 Query: 253 LGRHNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 LG H G +TIGQR+GL + A G+P +V+ + +RV VGP E+L+V + Sbjct: 250 LGTHEGAYGFTIGQRKGLRIGHPAADGKPRYVLDISPVDNRVTVGPAEALDVVGLTAIRP 309 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPV---PVFVQRNDDGVY-VDFEKS 355 W G A D + ++ + PV PV +R D GV+ FE++ Sbjct: 310 RWCGTA---PAGADAYTAQLRAHGGETPVMGEPV-RRRADTGVHDYQFERT 356 >gi|300690463|ref|YP_003751458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia solanacearum PSI07] gi|299077523|emb|CBJ50149.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia solanacearum PSI07] Length = 370 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 130/375 (34%), Positives = 188/375 (50%), Gaps = 27/375 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK+ GY+V+G+ ++ + S+ C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I V ++ +++ V F Y+AG TP P V CN +KF L LGAD + Sbjct: 62 LIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGADTI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QLC FPLG++ K VR Sbjct: 122 ATGHYARVREVDG-----RFELLKAFDHTKDQSYFLHRLNQAQLCRTLFPLGEIPKTRVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A E+GL A K DS ICF+ + + D + R G I + + +G+H G+ Sbjct: 177 EIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPIKTPDDKTIGQHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313 YT+GQR+G+G+ G+ +V D N+ V+ G L H ++ +++W+ Sbjct: 235 YTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 +G + K R Q P V R G + + F +++ V GQ+ V Y D Sbjct: 295 ----HPPAEGTQLAAKTRYRQTDAPCAVTRAAGGALTLTFPQAQWAVTPGQSAVLYDGDV 350 Query: 373 NEARVLGGGIISGSK 387 LGGGII+ ++ Sbjct: 351 ----CLGGGIIASTE 361 >gi|260102614|ref|ZP_05752851.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus helveticus DSM 20075] gi|260083568|gb|EEW67688.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus helveticus DSM 20075] gi|328468659|gb|EGF39653.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus helveticus MTCC 5463] Length = 375 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 132/378 (34%), Positives = 189/378 (50%), Gaps = 25/378 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ S G C A +D D ++V D Sbjct: 8 RVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDS---GVCTATEDYEDVKKVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y G TP P V CN +KF L L AD + Sbjct: 65 KIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLDFAMDLDADYI 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 A GHY ++ D M RP D +DQ+YFL Q Q+ + FPL ++ K VR Sbjct: 125 AMGHYAKTV----KDADGLTHMMRPKDGNKDQTYFLSQLNQDQIKKVIFPLANLTKPQVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A GL A K DS ICF+ + + + A G +V +G+++G H G++ Sbjct: 181 EIALANGLATAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGKVVGEHAGLMY 238 Query: 262 YTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF- 316 YTIGQR+GLG+ +P FVV D + +IV + + +Y + F Sbjct: 239 YTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSKLLYASRLKASDMSFFT 296 Query: 317 --EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD--FEKSEVGVASGQACVFYTSDS 372 D V+ F C K R Q V V V+ + D D F++ V GQA V Y + Sbjct: 297 GKPDHDVE-FHCSAKFRYRQCDVGVTVKYHADDNTADVYFDEPARAVTPGQALVLYQGE- 354 Query: 373 NEARVLGGGIISGSKRSD 390 LGGG I + + D Sbjct: 355 ---ECLGGGNIDAAYQED 369 >gi|15605008|ref|NP_219792.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis D/UW-3/CX] gi|237804632|ref|YP_002888786.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis B/TZ1A828/OT] gi|255317389|ref|ZP_05358635.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis 6276s] gi|6647880|sp|O84289|MNMA_CHLTR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|3328701|gb|AAC67880.1| PP-loop superfamily ATPase [Chlamydia trachomatis D/UW-3/CX] gi|231272932|emb|CAX09843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydia trachomatis B/TZ1A828/OT] gi|296436728|gb|ADH18898.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis G/11222] gi|297748416|gb|ADI50962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydia trachomatis D-EC] gi|297749296|gb|ADI51974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydia trachomatis D-LC] Length = 358 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 134/367 (36%), Positives = 195/367 (53%), Gaps = 27/367 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 V+VAMSGGVDSSVVA LLK+ G Y+V+G+ ++ + + + G C A +D D R+ + Sbjct: 5 VIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN---GECTATKDFRDVERIAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +Y + + ++ V F YA G TP P V CNR +KF L R+L D L Sbjct: 62 QLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGDFL 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R G DG + R +D +DQSYFL T + L ++ FPLG M K VR Sbjct: 122 ATGHYCRG----GADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTEVR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHNGII 260 +A+E GL A K DS ICF+ + + +++ A GDI+ + Q++GRH G Sbjct: 175 RIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADSP--GDIIDFDTQQVVGRHEGAH 232 Query: 261 NYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYL-REINWLGDGLF 316 YTIGQRRGL + M +P +V+ ++KN ++ G L + L +E+NW Sbjct: 233 YYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYRQELLAKELNWFVP--L 290 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 ++ ++ K V+ RS + V+ D V V F+ V GQ FY D Sbjct: 291 QEPMICSAK--VRYRSPDEKCSVY-PLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI---- 343 Query: 377 VLGGGII 383 LGGG+I Sbjct: 344 CLGGGVI 350 >gi|89094503|ref|ZP_01167442.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oceanospirillum sp. MED92] gi|89081239|gb|EAR60472.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oceanospirillum sp. MED92] Length = 371 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 130/384 (33%), Positives = 201/384 (52%), Gaps = 41/384 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ ++ ++ C A +D+ DA+ VCD Sbjct: 13 KVIVGMSGGVDSSVSALLLMQQGYQVEGLFMKNWDEDDGTEY---CTAKEDLADAQAVCD 69 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + ++ + + V F Y AG TP P + CNR +KF L +LGAD + Sbjct: 70 KLGIHLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLEYAVELGADFI 129 Query: 142 ATGHYIRSRLYVGD-DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY+R GD DGK R + + +D +DQSYFL Q ++ FP+G+++K +V Sbjct: 130 ATGHYVRR----GDRDGKTR--LLKGLDNNKDQSYFLHQVGQLEIEKTLFPVGELEKPAV 183 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R LA E L +K DS ICF+ + ++ D +K+ A G I NG ++G H G++ Sbjct: 184 RKLAEEHDLVTHNKKDSTGICFIGERRFSDFLKQYLP--AQPGKIETPNGDVIGEHAGLM 241 Query: 261 NYTIGQRRGLGVA-----MGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREINWL-G 312 YTIGQR+GL + EP FV LD+N + G + L +WL Sbjct: 242 YYTIGQRQGLQIGGLKDYPEEPWFVGAKDLDRNVLIAVQGKQNDLLF-------TDWLTA 294 Query: 313 DGLFEDAVVDG------FKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQAC 365 D LF ++G ++C K+R Q ++R+ + G + F + + + GQ+ Sbjct: 295 DELF---WINGEEPQLPYQCTAKVRYRQSDQGCIIERHGESGYRIVFNEPQRAITPGQSV 351 Query: 366 VFYTSDSNEARVLGGGIISGSKRS 389 V Y D LGGG+I + ++ Sbjct: 352 VIYQDDI----CLGGGVIEHTGKN 371 >gi|327393518|dbj|BAK10940.1| tRNA 5-methylaminomethyl-2- thiouridylate-methyltransferase TrmU [Pantoea ananatis AJ13355] Length = 370 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 126/373 (33%), Positives = 199/373 (53%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAADDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGIKLHKVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADF 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + D R + R D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 125 IATGHYVRRQ-----DSDGRSHLLRGGDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+ L A K DS ICF+ + K+ + + R A G+I ++GQ++G H G++ Sbjct: 180 RRIAEELELITAKKKDSTGICFIGERKFREFLARYLP--AQPGEIETVDGQVVGEHQGLM 237 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +T+GQR+GLG+ + +P +VV D +R+IV G L + ++++W+ Sbjct: 238 YHTLGQRKGLGIGGMKESKDDPWYVVDKDVARNRLIVAQGGDHPRLMSVGLIAQQLHWVD 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + +C VK R Q +P + + DD + V F++ V GQ+ VFY D Sbjct: 298 ----RQPLRAPLRCTVKTRYRQTDIPCEIIPQGDDKIEVRFDEPVAAVTPGQSAVFYLGD 353 Query: 372 SNEARVLGGGIIS 384 LGGGII Sbjct: 354 V----CLGGGIIE 362 >gi|315453196|ref|YP_004073466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter felis ATCC 49179] gi|315132248|emb|CBY82876.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter felis ATCC 49179] Length = 346 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 129/371 (34%), Positives = 194/371 (52%), Gaps = 32/371 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+V V MSGGVDSS A LL++ G++++GV L+L+ + C + V Sbjct: 1 MKVAVLMSGGVDSSYSAYLLQQAGHELLGVYLKLHGKEEKHALYIRNC--------QEVA 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +N+ V D + F+ V F +Y G+TP PC CN +KF L G + Sbjct: 53 KFLNIPFEVVDLQAEFKQGVYDAFVQAYEQGQTPNPCALCNPLMKFGLGLEFALNQGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + G RI D +DQSYFL+A Q+ + L FPLGD+ K + Sbjct: 113 IATGHYAR----LEKVGGVLRIK-EAKDTSKDQSYFLYALPQKAIDRLLFPLGDLLKSEI 167 Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 + LA E +G D+ +SQ+ICFV+ Y D +K+ + + EG + +L G+++G H Sbjct: 168 KPLALEKMPFLG-DLQTYKESQEICFVET-NYIDTLKK-HVQVDQEGIVRNLKGEVVGTH 224 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G ++YTIG+R+G + EP FVV +D + +IVG +E+L + + R + + Sbjct: 225 RGYMHYTIGKRKGFTIKGAHEPHFVVGIDALKNEIIVGQKEALAICTLEARNKSLPSN-- 282 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 F++ + VK+R P ++ DD + FE GVA GQA V Y D Sbjct: 283 FKEG-----EYLVKVRYRSTPTSAHIRLEDDTIRARFENPVYGVALGQALVIYDQD---- 333 Query: 376 RVLGGGIISGS 386 RVLGGG+I+ S Sbjct: 334 RVLGGGVITKS 344 >gi|312865771|ref|ZP_07725993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus downei F0415] gi|311098646|gb|EFQ56868.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus downei F0415] Length = 374 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 134/379 (35%), Positives = 191/379 (50%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V D Sbjct: 9 RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 65 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 66 QIGIPYYSVNFEKEYWDRVFEYFLAKYRAGRTPNPDVMCNKEIKFKAFLDYAMSLGADYV 125 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R D +DQ+YFL +Q+QL + FPLG ++K VR Sbjct: 126 ATGHYAQ----VSRDEDGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLEKPEVR 181 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A E GL A K DS ICF+ + + + + N A G ++ L+G+ +G+H G++ Sbjct: 182 KIAEEAGLATAKKKDSTGICFIGEKNFKEFLS--NYLPAQPGRMLTLDGKDMGQHAGLMY 239 Query: 262 YTI-----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTI G P FVV D + + + VG ++L + I++ D Sbjct: 240 YTIGQRGGLGIGGQQGGGNAPWFVVGKDLSQNILYVGQGFYHDALMSTSLKASTIHFTRD 299 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 E + +C K R Q V V D V F++ + + GQA VFY D Sbjct: 300 TPEEFTM----ECTAKFRYRQPDSKVTVHVKGDQAEVVFDQPQRAITPGQAVVFYDGD-- 353 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGGII + +++ V Sbjct: 354 --ECLGGGIIDNAYKNEVV 370 >gi|189463744|ref|ZP_03012529.1| hypothetical protein BACINT_00077 [Bacteroides intestinalis DSM 17393] gi|189438694|gb|EDV07679.1| hypothetical protein BACINT_00077 [Bacteroides intestinalis DSM 17393] Length = 359 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 124/383 (32%), Positives = 194/383 (50%), Gaps = 47/383 (12%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N + RV+V MSGG+DS+ +LK GY+++G+T+ ++ G + +A Sbjct: 2 NRPEKRVLVGMSGGIDSTATCLMLKEQGYEIVGLTMWVW--------------GDEPVEA 47 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R++ D++ + H+V D E FR ++ F Y G TP PCV CN T KF L +L Sbjct: 48 RQLADSMGIEHHVADEREAFRKVIVQNFIDEYCQGRTPNPCVMCNPTFKFRILTEWADKL 107 Query: 137 GADVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 ++TGHY +Y+ GDD K +DQSYFL+ Q L Sbjct: 108 DCAFISTGHYSHLEEKNGNIYIVAGDDDK------------KDQSYFLWRLGQDVLKRCL 155 Query: 190 FPLGDMKKESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDI 245 FPLG K VR RE G + A++ +S ++CF+ +G Y D ++ + I E G Sbjct: 156 FPLGTYTKLQVRKYLREKGYQLKAEEGESMEVCFI-KGDYRDFLREHSPEIDREIGPGWF 214 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 V+ G LG H G YTIGQR+GL +A+G+P +V+ ++ + V++G E L+ + Sbjct: 215 VNSEGVKLGEHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLQTEYMLA 274 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364 + N + + F A+ V++R P+P V+R +DG ++V F +A GQ+ Sbjct: 275 EQDNIIDEQEFFSAL----DLTVRVRYRSKPIPCTVKRLEDGRLFVHFLSEASAIAPGQS 330 Query: 365 CVFYTSDSNEARVLGGGIISGSK 387 VFY RV+GG I+ + Sbjct: 331 AVFYIG----RRVVGGSFIASQR 349 >gi|319900025|ref|YP_004159753.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides helcogenes P 36-108] gi|319415056|gb|ADV42167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides helcogenes P 36-108] Length = 357 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 127/384 (33%), Positives = 197/384 (51%), Gaps = 49/384 (12%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N + RV+V MSGG+DS+ +LK GY+++G+T+ ++ G + +A Sbjct: 2 NVFEKRVLVGMSGGIDSTATCLMLKGQGYEIVGLTMWVW--------------GDEPVEA 47 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++ D++ + HY+ D E FR ++ F Y+ G TP PCV CN KF L +L Sbjct: 48 GQLADSMGIEHYIVDERESFRRIIVQNFIDEYSGGRTPNPCVMCNPLFKFRILTEWADKL 107 Query: 137 GADVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 +ATGHY R ++Y+ GDD K +DQSYFL+ Q L Sbjct: 108 CCKYIATGHYTRLEEINHKIYIIAGDDDK------------KDQSYFLWRLGQDVLKRCI 155 Query: 190 FPLGDMKKESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDI 245 FPLG K VR+ R+ G + A++ +S ++CF+ +G Y D +K + I E G Sbjct: 156 FPLGTYTKIQVREYLRDNGYTVKAEEGESMEVCFI-KGDYRDFLKEYSPEIDSEIGSGWF 214 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 V+ G LG H G YTIGQR+GL +A+G+P +V+ ++ + V++G E L+ + Sbjct: 215 VNSEGVKLGEHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKTRYMLA 274 Query: 306 REINWLGDG-LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQ 363 + N +G FE V+ V+IR P+P V+R +DG + V F +A GQ Sbjct: 275 EQENLTDEGEFFESDVLT-----VRIRYRSKPIPCTVKRLEDGRLLVHFLIDASAIAPGQ 329 Query: 364 ACVFYTSDSNEARVLGGGIISGSK 387 + VFY + RV+GG I+ + Sbjct: 330 SAVFYI----DKRVVGGAFIASQR 349 >gi|258546108|ref|ZP_05706342.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cardiobacterium hominis ATCC 15826] gi|258518660|gb|EEV87519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cardiobacterium hominis ATCC 15826] Length = 369 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 132/382 (34%), Positives = 195/382 (51%), Gaps = 29/382 (7%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P+ ++ V +SGGVDSSV A LL+ GYDV G+ ++ + +S G C A +DV DAR Sbjct: 7 PQGAKIAVGISGGVDSSVAALLLRDAGYDVFGIFMKNWEETYSS---GYCSAEEDVEDAR 63 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 VC+T+ + + ++ + V F + Y AG TP P + CNR +KF+++ +LG Sbjct: 64 DVCETLGIPLHTVNFVAEYHERVFRHFLAEYGAGRTPNPDILCNREIKFAEMAHYAAELG 123 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD LATGHY R + G + + +D +DQSYFL T QL FPLG M K Sbjct: 124 ADYLATGHYARRGTHHGAPA-----LYKGVDGSKDQSYFLSQITPAQLDKALFPLGGMAK 178 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR +A + GL DK DS ICF+ + + D + N G ++ G +G H Sbjct: 179 SDVRRIAEQAGLVTYDKKDSTGICFIGERPFRDFLA--NYFENKPGKMITPQGVWVGEHI 236 Query: 258 GIINYTIGQRRGLGVAMG-----EPLFVVYLDKNSS--RVIVGPRESLEVHRIYL--REI 308 G++ YTIGQR+GLG+ EP +V LDKN + +IVG E ++ L R++ Sbjct: 237 GLMYYTIGQRQGLGIGGIAGASEEPWYV--LDKNPADNTLIVGQGEHPLLYHDTLTARQL 294 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 WL + V ++ + R P + Q D+ + V F++ + + GQ V Y Sbjct: 295 AWLNEAPEAGRV---YQAKTRYRQPDQPCRITWQGEDE-ITVQFDEPQRAITPGQYLVLY 350 Query: 369 TSDSNEARVLGGGIISGSKRSD 390 + R LGGG+I D Sbjct: 351 DGE----RCLGGGVIEARSNRD 368 >gi|54297299|ref|YP_123668.1| tRNA-specific 2-thiouridylase MnmA [Legionella pneumophila str. Paris] gi|81601865|sp|Q5X5H6|MNMA_LEGPA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|53751084|emb|CAH12495.1| hypothetical protein lpp1344 [Legionella pneumophila str. Paris] Length = 361 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 122/371 (32%), Positives = 191/371 (51%), Gaps = 27/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK GY V G+ ++ + + C A +D+ DA+ VC+ Sbjct: 4 KVIVGMSGGVDSSVAAWLLKEQGYQVEGLFMKNW---EQDDHNDFCPAAKDLADAQAVCN 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + ++ + + + V F S Y G TP P V CN+ +KF+ L+ LGAD + Sbjct: 61 QLRIPLHTVNFSKEYWDRVFAYFLSEYEKGRTPNPDVLCNKEIKFNAFLNHALNLGADYI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY ++ + G G + + D E+DQ+YFL A + L FP+GD K +R Sbjct: 121 ATGHYAKNTI-EGSIG----YLFKAKDREKDQTYFLHAVEPEALSKTIFPIGDFTKPQIR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 + A+++GL K DS ICF+ + ++ + +A G+I G+ LG+H+G++ Sbjct: 176 EFAKQLGLVTHAKKDSTGICFIGEKRFKTFLNEFI--LAKPGEIKSTGGKTLGQHDGLMF 233 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313 YT+GQR+GLG+ + EP +VV D S+ + V L + I+WL D Sbjct: 234 YTLGQRQGLGIGGLQNSTDEPWYVVDKDIASNTLYVAQGSQHPMLYSQGLICGPIHWLAD 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDS 372 +E+ + CF K R Q + D+ + YV F + + GQ VFY + Sbjct: 294 --YENHLP--LTCFAKTRYRQTDQACMISPPDNNLHYVIFSSPQRAITPGQFIVFYEKN- 348 Query: 373 NEARVLGGGII 383 + LGG I Sbjct: 349 ---QCLGGATI 356 >gi|239828143|ref|YP_002950767.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus sp. WCH70] gi|239808436|gb|ACS25501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus sp. WCH70] Length = 370 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 133/380 (35%), Positives = 197/380 (51%), Gaps = 25/380 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K RVVV MSGGVDSSV A LLK++GYDVIGV ++ ++ + G C A +D D +R Sbjct: 2 KKKRVVVGMSGGVDSSVAAYLLKQEGYDVIGVFMKNWDD---TNDDGVCTATEDYEDVKR 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + +Y ++E+ + + V F G TP P V CN +KF + L A Sbjct: 59 VANQLGIPYYSVNFEKEYWDRVFTYFIDELKRGRTPNPDVLCNTEIKFKAFVDYALSLDA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R G + + R D +DQ+YFL T + L + FP+G++ K+ Sbjct: 119 DYIATGHYARISRENG-----QIALLRGKDPNKDQTYFLSQLTAEHLSKVLFPIGELTKD 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A+E+ L A+K DS ICF+ + + + +K N A G+I L+G++LG H+G Sbjct: 174 EVRKIAQELNLVNANKKDSTGICFIGERNFKNFLK--NYLPAQPGEIRSLDGEVLGTHDG 231 Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 ++ YTIGQR+ G GEP +VV D ++ ++V +L + I+++ Sbjct: 232 LMYYTIGQRKGLGIGGKGTGEPWYVVDKDLENNVLLVAQGKNHPALFSTGLIASNISFIN 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371 D F C K R Q+ V V +G +V+FEK V GQ VFY +D Sbjct: 292 G----DVRPRTFACTAKFRYRQEDQKVTVHIRPNGTAFVEFEKPVKAVTPGQVAVFYDND 347 Query: 372 SNEARVLGGGIISGSKRSDA 391 LG II + DA Sbjct: 348 V----CLGSAIIDEVIKMDA 363 >gi|188494195|ref|ZP_03001465.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 53638] gi|188489394|gb|EDU64497.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 53638] Length = 368 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 130/373 (34%), Positives = 205/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G++ Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ EP +VV D +N+ V+ E + + L ++++W+ Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVD 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 F + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY + Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYDGE 352 Query: 372 SNEARVLGGGIIS 384 LGGGII Sbjct: 353 V----CLGGGIIE 361 >gi|322833617|ref|YP_004213644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rahnella sp. Y9602] gi|321168818|gb|ADW74517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rahnella sp. Y9602] Length = 369 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 123/373 (32%), Positives = 194/373 (52%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDDEE---YCTAATDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + D + R +D +DQSYFL+ +Q+ FP+G+++K V Sbjct: 125 IATGHYVRRQ-----DINGVSHLLRGIDGNKDQSYFLYTLGHEQVAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+ L A K DS ICF+ + K+ D + R A G I ++GQ++G+H G++ Sbjct: 180 RRIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGVIKSVDGQVMGQHQGLM 237 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ EP + V D +N+ + E + + L ++++W+ Sbjct: 238 YHTLGQRKGLGIGGQKDGSEEPWYTVEKDVENNILYVAQGHEHPRLMNVGLIAQQLHWVD 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + C VK R Q+ +P V DD + V F+ V GQ+ VFY + Sbjct: 298 ----RKTLTGPLTCTVKTRYRQEDIPCVVTPLGDDRIEVRFDAPVAAVTPGQSAVFYLGE 353 Query: 372 SNEARVLGGGIIS 384 LGGG+I Sbjct: 354 V----CLGGGVIE 362 >gi|320086325|emb|CBY96098.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 383 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 133/396 (33%), Positives = 215/396 (54%), Gaps = 32/396 (8%) Query: 1 MVVSEATRLN--SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR 58 M+ A + N S+ + ++PK +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MIEYAALKFNVASIPMSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEED 58 Query: 59 KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118 + C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + Sbjct: 59 DGEEY---CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDI 115 Query: 119 DCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177 CN+ +KF L + LGAD +ATGHY+R R V +GK R + R +D +DQSYFL Sbjct: 116 LCNKEIKFKAFLEFAAEDLGADYIATGHYVR-RADV--NGKSR--LLRGLDGNKDQSYFL 170 Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA 237 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R Sbjct: 171 YTLGHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP 230 Query: 238 GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVI 291 A G I+ ++G +G H G++ +T+GQR+GLG+ +P +VV D +N+ ++ Sbjct: 231 --AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIV 288 Query: 292 VGPRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGV 348 E + + L ++++W+ F + +C VK R Q +P + +DD + Sbjct: 289 AQGHEHPRLMSVGLIAQQLHWVDREPFTGTL----RCTVKTRYRQTDIPCTINALDDDRI 344 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 V F++ V GQ+ VFY+ + LGGGII Sbjct: 345 EVIFDEPVAAVTPGQSAVFYSGEV----CLGGGIIE 376 >gi|308049705|ref|YP_003913271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ferrimonas balearica DSM 9799] gi|307631895|gb|ADN76197.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ferrimonas balearica DSM 9799] Length = 367 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 133/378 (35%), Positives = 201/378 (53%), Gaps = 33/378 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A QD+ DA+ Sbjct: 5 RNKKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDTEE---YCAASQDLADAQA 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LG 137 VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + LG Sbjct: 62 VCDKLGIELHSVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAEALG 121 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY+R R +DG+ M R +D +DQSYFL+ + + FP+G+++K Sbjct: 122 ADYIATGHYVRRRQR--EDGQFE--MLRGLDGNKDQSYFLYTLGHEHVAQTLFPVGELEK 177 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR +A E L A K DS ICF+ + K+ D + + A GDI G+++G+H+ Sbjct: 178 PEVRRIAEEQDLITAGKKDSTGICFIGERKFKDFLAKYLP--AQPGDIETTEGEVIGQHD 235 Query: 258 GIINYTIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIVG-----PRESLEVHRIYLRE 307 G++ +T+GQR+GL + GE P +VV D + +IVG PR L + + + Sbjct: 236 GLMYHTLGQRKGLRIGGLKDAGEAPWYVVDKDLERNVLIVGQGADNPR--LFSNGLVANQ 293 Query: 308 INWLG-DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365 ++W+ G + VV VK R Q +P V DG + V F + V GQ+ Sbjct: 294 LHWVDRTGPQGETVVS-----VKTRYRQQDIPCTVTPLADGELEVRFHEPVSSVTPGQSA 348 Query: 366 VFYTSDSNEARVLGGGII 383 VFY D LGGGII Sbjct: 349 VFYQGDV----CLGGGII 362 >gi|299065725|emb|CBJ36899.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia solanacearum CMR15] Length = 370 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 129/375 (34%), Positives = 187/375 (49%), Gaps = 27/375 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ + S+ C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I V ++ +++ V F Y+AG TP P V CN +KF L LGAD + Sbjct: 62 LIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGADTI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPL +M K VR Sbjct: 122 ATGHYARVREVDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLSEMPKTRVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A E+GL A K DS ICF+ + + D + R G I +G+ +G+H G+ Sbjct: 177 EIAAEIGLPNARKKDSTGICFIGERPFRDFLNRYLP--TQPGPIRTPDGKTIGQHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YT+GQR+G+G+ G+ +V D ++ + V L H ++ +++W+ Sbjct: 235 YTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVAQGHDHPWLLAHTVHADDLSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDS 372 +G + K R Q P V + D + + FE+++ V GQ+ V Y D Sbjct: 295 ----HPPAEGTQLAAKTRYRQADAPCAVTSASGDALTLTFEQAQWAVTPGQSAVLYDGDI 350 Query: 373 NEARVLGGGIISGSK 387 LGGGII+ ++ Sbjct: 351 ----CLGGGIIASTE 361 >gi|331703443|ref|YP_004400130.1| tRNA(5 methylaminomethyl 2 thiouridylate) methyltransferase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801998|emb|CBW54152.1| tRNA(5 methylaminomethyl 2 thiouridylate) methyltransferase [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 384 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 129/378 (34%), Positives = 196/378 (51%), Gaps = 27/378 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 +VVV +SGGVDSSV LL + GY+V G+ ++ ++S + G+ C QD Sbjct: 13 KVVVGLSGGVDSSVACYLLLQQGYEVEGLFMRNWDSATNNDILGNTNINNDICPQEQDFL 72 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VT 133 DA+ V D +N+ + D+ + + + V F Y TP P + CN+ +KF L+ Sbjct: 73 DAKAVADKLNIKLHRVDFIKEYWDYVFSYFIEEYKKARTPNPDILCNKYIKFDKFLNYAI 132 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 QL AD +A GHY + + ++ + + D +DQ+YFL Q QL FPL Sbjct: 133 NQLNADYIAMGHYAKVEF---NKTTKQYELIKASDTNKDQTYFLSQLNQNQLSKTLFPLA 189 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252 ++ KE VR +A E L A+K DS ICF+ + + D ++ N + GDIV + ++ Sbjct: 190 NLTKEQVRKIALEQNLITANKKDSTGICFIGERHFTDFLQ--NYIPSQTGDIVDIKTNKV 247 Query: 253 LGRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLR 306 LG+H GI+ YTIGQR+G+ ++ M EP +V DK+ + I+ + L ++ Sbjct: 248 LGKHIGIMYYTIGQRKGIHLSGMSEPYYVA--DKDVEKKILYVCSTSDQSYLYSTSCFVN 305 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQAC 365 +INW+ D + V+ FKC K R Q+ V V++ DD Y V FEK + GQ Sbjct: 306 DINWILDLSKYVSDVNEFKCQAKFRYRQNDNNVVVKKIDDNNYQVIFEKPLKAITIGQQA 365 Query: 366 VFYTSDSNEARVLGGGII 383 VFY D LGG +I Sbjct: 366 VFYLDDI----CLGGAVI 379 >gi|237749831|ref|ZP_04580311.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter bilis ATCC 43879] gi|229374581|gb|EEO24972.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter bilis ATCC 43879] Length = 347 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 127/374 (33%), Positives = 197/374 (52%), Gaps = 32/374 (8%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 +++N K +V + MSGGVDSS A LL++ GY+V+G+ L+L++ + + Sbjct: 1 MEQNKK--KVALLMSGGVDSSYSAYLLQQQGYEVLGIYLKLHDKEEKH--------AVFI 50 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 + +VC+ + + + + +E F+ AV F SY GETP PC CN +KF L+ Sbjct: 51 RNCEKVCEFLGLEFKIIEAKEEFKKAVYNEFIESYKRGETPNPCALCNPLMKFGLALNAA 110 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 G + +ATGHY R + DG +R R D +DQSYFL+A +Q + L FPLG Sbjct: 111 LGYGCEYIATGHYAR---IISIDGIKRIQEAR--DKSKDQSYFLYAISQDAINRLIFPLG 165 Query: 194 DMKKESVRD---LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250 DM KE V+ A + D+ +SQ+ICFV+ Y D++K+ + + +G + G Sbjct: 166 DMLKEEVKPKAFAALPILGDLESYKESQEICFVET-DYIDILKK-HVSVENKGVVRDTQG 223 Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 I+G H G + YTIG+R+G V EP FV+ ++ + ++VG +E LE + Sbjct: 224 NIVGEHKGYMQYTIGKRKGFSVKGAHEPHFVLKINPKDNEIVVGKKEELETFC-----VT 278 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 L L + + +K V+ RS+ + +Q DD + ++ GVA GQA V Y Sbjct: 279 ALNKSLPNEFINGEYKAKVRYRSTPSNATITIQ--DDKIIATLKEPVYGVAKGQALVIYK 336 Query: 370 SDSNEARVLGGGII 383 D VLGGG+I Sbjct: 337 DDI----VLGGGVI 346 >gi|34498857|ref|NP_903072.1| tRNA-specific 2-thiouridylase MnmA [Chromobacterium violaceum ATCC 12472] gi|81653627|sp|Q7MBE1|MNMA_CHRVO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|34104709|gb|AAQ61066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chromobacterium violaceum ATCC 12472] Length = 384 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 128/370 (34%), Positives = 186/370 (50%), Gaps = 26/370 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+VV MSGGVDSSV A LLK+ G++VIGV +Q + + C QD DA V D Sbjct: 32 RIVVGMSGGVDSSVTAWLLKQQGHEVIGVFMQNWEDDNDDEY---CSIKQDALDAMSVAD 88 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + ++ + +++ V F Y+AG TP P V CN +KF L +LGAD + Sbjct: 89 IVGIDMEIVNFAKEYKDRVFSYFLKEYSAGRTPNPDVLCNAEIKFKAFLDYAMELGADCI 148 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + DG + + +D +DQSYFL+ Q QL FPLGD++K VR Sbjct: 149 ATGHYARK---LEQDGT--HYLMKAVDHTKDQSYFLYRLQQHQLAKAIFPLGDIRKTEVR 203 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS ICF+ + + + ++R G +V +G+++G H G++ Sbjct: 204 RLAEEAGLPTAAKKDSTGICFIGERPFREFLQRYLP--TSPGQMVTPDGKVVGEHIGLMY 261 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV--GPRESLEVH-RIYLREINWLGD 313 YT+GQR+GL + GEP FV D +++IV G L + + + +++W Sbjct: 262 YTLGQRKGLTIGGSRDGNGEPWFVAGKDIPGNKLIVVQGHDHPLLLKPTLSMADLSW--- 318 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 DA G D D + F++ + V GQ+ V Y D Sbjct: 319 -TLPDAPAPGEYSAKNRYRMADAACTLSPIVDGQASLTFQEKQWAVTPGQSAVLYHGDI- 376 Query: 374 EARVLGGGII 383 LGGGII Sbjct: 377 ---CLGGGII 383 >gi|331682639|ref|ZP_08383258.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli H299] gi|331080270|gb|EGI51449.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli H299] Length = 368 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 129/373 (34%), Positives = 205/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G++ Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ EP +VV D +N+ ++ E + + L ++++W+ Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVD 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 F + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY + Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYDGE 352 Query: 372 SNEARVLGGGIIS 384 LGGGII Sbjct: 353 V----CLGGGIIE 361 >gi|237802710|ref|YP_002887904.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis B/Jali20/OT] gi|231273944|emb|CAX10736.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydia trachomatis B/Jali20/OT] Length = 358 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 134/368 (36%), Positives = 195/368 (52%), Gaps = 27/368 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 V+VAMSGGVDSSVVA LLK+ G Y+V+G+ ++ + + + G C A +D D R+ + Sbjct: 5 VIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN---GECTATKDFRDVERIAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +Y + + ++ V F YA G TP P V CNR +KF L R+L D L Sbjct: 62 QLSIPYYTVSFYKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGDFL 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R G DG + R +D +DQSYFL T + L ++ FPLG M K VR Sbjct: 122 ATGHYCRG----GADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTEVR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHNGII 260 +A+E GL A K DS ICF+ + + +++ A GDI+ + Q++GRH G Sbjct: 175 RIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADSP--GDIIDFDTQQVVGRHEGAH 232 Query: 261 NYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYL-REINWLGDGLF 316 YTIGQRRGL + M +P +V+ ++KN ++ G L + L +E+NW Sbjct: 233 YYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYRQELLAKELNWFVP--L 290 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 ++ ++ K V+ RS + V+ D V V F+ V GQ FY D Sbjct: 291 QEPMICSAK--VRYRSPDEKCSVY-PLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI---- 343 Query: 377 VLGGGIIS 384 LGGG+I Sbjct: 344 CLGGGVIE 351 >gi|290475827|ref|YP_003468719.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xenorhabdus bovienii SS-2004] gi|289175152|emb|CBJ81955.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xenorhabdus bovienii SS-2004] Length = 367 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 132/383 (34%), Positives = 206/383 (53%), Gaps = 34/383 (8%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 LD + K +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ Sbjct: 2 LDNSQK--KVIVGMSGGVDSSVSAYLLQQQGYKVAGLFMKNWEEDDDEE---YCSAAADL 56 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 57 ADAQAVCDKLGIELHTINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFA 116 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + LGAD +ATGHY+R R DG + + R +D +DQSYFL+ + QQ+ FP+ Sbjct: 117 AEDLGADYIATGHYVRRRDV---DGISQ--LLRGLDGNKDQSYFLYTLSHQQIAKSLFPV 171 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR LA E+GL A K DS ICF+ + K+ D + R A G I+ ++GQ Sbjct: 172 GELEKPEVRRLAEEIGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGSIITVDGQT 229 Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHR 302 +G+H G++ +T+GQR+GLG+ E +VV D ++ +IV PR L Sbjct: 230 IGQHTGLMYHTLGQRKGLGIGGTKDGSEEAWYVVDKDVENNTLIVAQGHDHPR--LMSVG 287 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVAS 361 + ++++W+ A+ +C VK R Q +P + ++D + V F+ V Sbjct: 288 LIAQQLDWVD----RQALKTEIRCVVKTRYRQHDIPCTVIPLSEDKIEVRFDSPVAAVTP 343 Query: 362 GQACVFYTSDSNEARVLGGGIIS 384 GQ+ VFY + LGGG+I Sbjct: 344 GQSAVFYQGEI----CLGGGVIE 362 >gi|170727050|ref|YP_001761076.1| tRNA-specific 2-thiouridylase MnmA [Shewanella woodyi ATCC 51908] gi|205816913|sp|B1KID0|MNMA_SHEWM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|169812397|gb|ACA86981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella woodyi ATCC 51908] Length = 377 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 128/374 (34%), Positives = 202/374 (54%), Gaps = 32/374 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 18 KVIVGMSGGVDSSVSAYLLLKQGYQVEGLFMKNWEEDDTDEY---CAAADDLKDAQAVCD 74 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L L AD Sbjct: 75 KLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIICNKEIKFKAFLEFADDILDADY 134 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R DD + + M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 135 IAMGHYVRRS----DDSGQSQ-MLRGIDGNKDQSYFLYTLSHEQVSRSLFPVGELEKSEV 189 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A+EMGL DK DS ICF+ + K+ D + A G+I G+++G H G++ Sbjct: 190 REIAKEMGLITHDKKDSTGICFIGERKFTDFLSTFLP--AQPGNIETAEGEVIGTHQGLM 247 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ + +P +VV + + + ++VG PR L Y +++W Sbjct: 248 YHTLGQRKGLGIGGMKNSNDDPWYVVDKEMDRNVLVVGQGGNHPR--LMSTGFYADQLHW 305 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYT 369 + D + D +G K VK R Q V + + +D V V F++ V GQ+ VFY Sbjct: 306 V-DRIGPD---NGAKITVKTRYRQRDVACSLHYDGEDRVKVLFDEPVAAVTPGQSAVFYD 361 Query: 370 SDSNEARVLGGGII 383 ++ LGGGII Sbjct: 362 AEV----CLGGGII 371 >gi|291279546|ref|YP_003496381.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Deferribacter desulfuricans SSM1] gi|290754248|dbj|BAI80625.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Deferribacter desulfuricans SSM1] Length = 346 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 122/365 (33%), Positives = 199/365 (54%), Gaps = 29/365 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +++VAMSGGVDSSV A + ++G+DV+GVTL+L++S K + DA V Sbjct: 4 KIIVAMSGGVDSSVAAYKMLKEGFDVVGVTLKLFDSENTEKM---------IADAESVAK 54 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + V DY F++ VI F +SY GETP PC CN+T KF L + ++ A + Sbjct: 55 LLGIKWCVADYSSYFKD-VISYFINSYRKGETPNPCAYCNKTAKFVYLFNEMQKNNAKYI 113 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KKESV 200 ATGHY + + +GK+ + + +L++DQSY+L Q+ L+FPL ++ K+ Sbjct: 114 ATGHYAK---IIEKNGKK--YIGKATNLQKDQSYYLALLDSFQISLLKFPLSEIDSKDET 168 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHNGI 259 R +A+E+GL +++K DSQ++CF+ Y + + +++++ +G +++ NG+ L H G+ Sbjct: 169 RQIAKEIGLPVSEKKDSQEVCFLCGRNYREFLSEKVDSKRFKKGYMIY-NGKKLREHEGV 227 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YT+GQRRGLG+ EPL+V +D + + +E + + LR++N + D L Sbjct: 228 EFYTVGQRRGLGLNYHEPLYVKEIDAKKGNIYLAKKEEVVKRGVKLRDVNMVDDRL---- 283 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 FK KIR + V+ + + FEK + GQ Y D V+ Sbjct: 284 --RVFKAKAKIRYRMNEEDCLVEILPESKALILFEKPQFAPTKGQLAAIYLDDI----VV 337 Query: 379 GGGII 383 GGG I Sbjct: 338 GGGFI 342 >gi|255348647|ref|ZP_05380654.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis 70] gi|255503187|ref|ZP_05381577.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis 70s] Length = 358 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 133/367 (36%), Positives = 195/367 (53%), Gaps = 27/367 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++VAMSGGVDSSVVA LLK+ G Y+V+G+ ++ + + + G C A +D D R+ + Sbjct: 5 IIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN---GECTATKDFRDVERIAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +Y + + ++ V F YA G TP P V CNR +KF L R+L D L Sbjct: 62 QLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGDFL 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R G DG + R +D +DQSYFL T + L ++ FPLG M K VR Sbjct: 122 ATGHYCRG----GADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTEVR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHNGII 260 +A+E GL A K DS ICF+ + + +++ A GDI+ + Q++GRH G Sbjct: 175 RIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADSP--GDIIDFDTQQVVGRHEGAH 232 Query: 261 NYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYL-REINWLGDGLF 316 YTIGQRRGL + M +P +V+ ++KN ++ G L + L +E+NW Sbjct: 233 YYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYRQELLAKELNWFVP--L 290 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 ++ ++ K V+ RS + V+ D V V F+ V GQ FY D Sbjct: 291 QEPMICSAK--VRYRSPDEKCSVY-PLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI---- 343 Query: 377 VLGGGII 383 LGGG+I Sbjct: 344 CLGGGVI 350 >gi|260779096|ref|ZP_05887988.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio coralliilyticus ATCC BAA-450] gi|260605260|gb|EEX31555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio coralliilyticus ATCC BAA-450] Length = 373 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 122/377 (32%), Positives = 196/377 (51%), Gaps = 32/377 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 12 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCD 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 69 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R D+G++ + M R +D +DQSYFL+ + Q+ FP+G+++K V Sbjct: 129 IAMGHYVRRTF--PDNGEKPQ-MLRGLDGNKDQSYFLYTLSSDQIARSLFPVGELEKPEV 185 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E L A K DS ICF+ + K+ D + R A G I G+++G H G++ Sbjct: 186 RRIAEEQDLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 243 Query: 261 NYTIGQRRGLGVAMG-------EPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLREI 308 +T+GQR+GL + +P +V DK+ R ++ L+ + ++ Sbjct: 244 YHTLGQRKGLHIGGQKGGGGNEDPWYVA--DKDLKRNVLIAVQGAEHPLLKSQGLIASQL 301 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVF 367 +W+ + + +C VK R Q +P + +D+ + V F+ +V V GQ+ VF Sbjct: 302 HWVD----REIIKAPLQCSVKTRYRQTDIPCTIIPIDDENIKVIFDDPQVAVTPGQSAVF 357 Query: 368 YTSDSNEARVLGGGIIS 384 Y D LGGGII Sbjct: 358 YKDDV----CLGGGIIE 370 >gi|91781835|ref|YP_557041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia xenovorans LB400] gi|123359156|sp|Q145K0|MNMA_BURXL RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|91685789|gb|ABE28989.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia xenovorans LB400] Length = 381 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 127/373 (34%), Positives = 178/373 (47%), Gaps = 29/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV MSGGVDSSV A LLK GYDV+G+ ++ + S+ C QD D V D Sbjct: 5 KVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L LGA + Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R + R + + +D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVR-----ENNGRFELLKALDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKTRVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++ L A K DS ICF+ + + D + R G + G+++G H G+ Sbjct: 177 EIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTTEGKVVGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YT GQR+G+G+ GEP FV D S+ + V L H + +W+ Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAGKDIPSNTLYVAQGHDHPWLLSHTLSAGNTSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG---VYVDFEKSEVGVASGQACVFYTS 370 + DGF C K R Q P G ++F+ ++ V GQ+ V Y Sbjct: 295 ----EPPADGFACGAKTRYRQADAPCTFSSAGAGEGLFELNFDVAQWAVTPGQSAVLYDG 350 Query: 371 DSNEARVLGGGII 383 D LGGGII Sbjct: 351 DV----CLGGGII 359 >gi|50121369|ref|YP_050536.1| tRNA-specific 2-thiouridylase MnmA [Pectobacterium atrosepticum SCRI1043] gi|71658013|sp|Q6D4E9|MNMA_ERWCT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|49611895|emb|CAG75344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 368 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 129/376 (34%), Positives = 200/376 (53%), Gaps = 33/376 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + ++ C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYHVEGLFMKNWEEDDDTEY---CSAATDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R DGK R + R MD +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 125 IATGHYVRRHDV---DGKSR--LLRGMDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259 R +A E+ L A K DS ICF+ + K+ D + R A G I+ + + + +G+H G+ Sbjct: 180 RKIAEELELATAKKKDSTGICFIGERKFTDFLARYLP--AQPGPILSVDDNKPMGQHQGL 237 Query: 260 INYTIGQRRGLGVA----MGE-PLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREIN 309 + +T+GQR+GLG+ GE P +VV DK+ + I+ + E R+ ++++ Sbjct: 238 MYHTLGQRKGLGIGGVKDGGEDPWYVV--DKDVANNILYVAQGHEHPRLMSYGLIAQQLH 295 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368 W+ + +C VK R Q + V DD + V F++ V GQ+ VFY Sbjct: 296 WVD----RQPLTAELRCTVKTRYRQADISCTVTPLGDDRITVRFDEPFAAVTPGQSAVFY 351 Query: 369 TSDSNEARVLGGGIIS 384 D LGGGII Sbjct: 352 LDDV----CLGGGIIE 363 >gi|296161025|ref|ZP_06843836.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia sp. Ch1-1] gi|295888724|gb|EFG68531.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia sp. Ch1-1] Length = 381 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 127/373 (34%), Positives = 177/373 (47%), Gaps = 29/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV MSGGVDSSV A LLK GYDV+G+ ++ + S+ C QD D V D Sbjct: 5 KVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L LGA+ + Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAISLGAETI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R + R + + D +DQSYFL Q QL FPLG+ K VR Sbjct: 122 ATGHYARVR-----ENNGRFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGETPKTKVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++ L A K DS ICF+ + + D + R G + G+++G H G+ Sbjct: 177 EIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTTEGKVVGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YT GQR+G+G+ GEP FV D S+ + V L H + +W+ Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAGKDIPSNTLYVAQGHDHPWLLSHTLSAGNTSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG---VYVDFEKSEVGVASGQACVFYTS 370 + DGF C K R Q P G ++F+ ++ V GQ+ V Y Sbjct: 295 ----EPPADGFACGAKTRYRQADAPCTFSSAGAGEGLFELNFDTAQWAVTPGQSAVLYDG 350 Query: 371 DSNEARVLGGGII 383 D LGGGII Sbjct: 351 DV----CLGGGII 359 >gi|157736746|ref|YP_001489429.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arcobacter butzleri RM4018] gi|205810440|sp|A8ES36|MNMA2_ARCB4 RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|157698600|gb|ABV66760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arcobacter butzleri RM4018] Length = 367 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 128/381 (33%), Positives = 205/381 (53%), Gaps = 34/381 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ-DVYDAR 77 K+ ++VV MSGGVDSSV A LLK+ GYDV+G+ ++ + KGS C + + DA+ Sbjct: 3 KNKKIVVGMSGGVDSSVTALLLKQQGYDVVGLFMRNWEY----GIKGSQCPNRIEFEDAK 58 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 +V I + D+ + +R+ V F G TP P + CN+ +KF+ L+ + +G Sbjct: 59 KVGALIGIEVRGKDFVKEYRDRVFDVFLEGLKQGLTPNPDILCNKEIKFNVFLNEAKSMG 118 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD++ATGHY + Y K ++ P D +DQSYFL A + +QL FPLGD+ K Sbjct: 119 ADMIATGHYAKIAKY-----KDHFVLDTPKDNTKDQSYFLHALSSEQLSHAMFPLGDLTK 173 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + VR++AR L ++DK DS ICF+ K+ + + + A+ GDI+ NG+++G+H Sbjct: 174 KEVREIARAHNLPVSDKKDSTGICFIGNQKFDEFITQHLQ--AIPGDILDENGKVIGKHK 231 Query: 258 GIINYTIGQRRGLGVA----------MGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IY 304 G++ YT+GQR+G+G+ +P FV D N+ ++ L + + + Sbjct: 232 GLVCYTLGQRKGIGLGGIKGNESENNTHKPWFVASKDVVNNTLTIVQDTNHPLLMSKTVE 291 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 ++W + E+A G K ++R Q V+ N++ V V+F+ + V GQ Sbjct: 292 ASHMHW----VLEEAPKVGDKLMAQVRYRQQKQACTVVEANEEKVVVEFDNPQRAVTLGQ 347 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + V Y+ D LGGG IS Sbjct: 348 SLVLYSGD----YCLGGGFIS 364 >gi|227886510|ref|ZP_04004315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 83972] gi|300975599|ref|ZP_07173078.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 45-1] gi|301051077|ref|ZP_07197911.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 185-1] gi|227836714|gb|EEJ47180.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 83972] gi|300297249|gb|EFJ53634.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 185-1] gi|300410262|gb|EFJ93800.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 45-1] gi|315293099|gb|EFU52451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 153-1] Length = 383 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 133/394 (33%), Positives = 210/394 (53%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 61 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L + LGAD +ATGHY+R R V DGK R + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + R Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRKFLGRYLP-- 230 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVG 293 A G I+ ++G +G H G++ +T+GQR+GLG+ EP +VV D +N+ ++ Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQ 290 Query: 294 PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYV 350 E + + L ++++W+ F + +C VK R Q +P V+ D D + V Sbjct: 291 GHEHPRLMSVGLIAQQLHWVDREPFTGTM----RCTVKTRYRQTDIPCTVKALDADRIEV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY N LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFY----NGEVCLGGGIIE 376 >gi|294788306|ref|ZP_06753549.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Simonsiella muelleri ATCC 29453] gi|294483737|gb|EFG31421.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Simonsiella muelleri ATCC 29453] Length = 363 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 130/374 (34%), Positives = 194/374 (51%), Gaps = 22/374 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ ++V +SGGVDSSV AALLK+DG +V GV +Q + + C QD DA Sbjct: 3 ENQNIIVGLSGGVDSSVTAALLKQDGANVHGVFMQNWEDDNNDQY---CSIKQDSLDAMA 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + + ++ ++++ V F YAAG TP P V CN +KF L + GA Sbjct: 60 VADIIGIDIDIVNFATQYKDKVFAYFLQEYAAGRTPNPDVLCNAEIKFKCFLDYAIEQGA 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R ++ G + R +D +DQSYFL+ QL FPLG ++K Sbjct: 120 EAIATGHYARKQIRNG-----VHYLLRGLDNNKDQSYFLYRLQPHQLEKSLFPLGHLQKT 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR LA E+ L A K DS ICF+ + + + +++ G++V G+I+G H G Sbjct: 175 EVRRLATELKLPTATKKDSTGICFIGERPFREFLQKYLP--THNGNMVTPEGKIVGEHVG 232 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGP-RESLEVHRIYLREINWLGDG 314 + YTIGQR+GLG+ GEP FVV L KN V+ G E L + + + +++W Sbjct: 233 LTFYTIGQRKGLGIGGAGEPWFVVGKDLPKNELLVVQGHDHELLYTNSLEMNQLSWT--- 289 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 L E V + C + R + D +DD + F + + V GQ+ V Y + Sbjct: 290 LPEKPVAGRYTCKTRYRMA-DAACELRYLSDDTAELLFNEPQWAVTHGQSAVLYDGEI-- 346 Query: 375 ARVLGGGIISGSKR 388 LGGGII+ + + Sbjct: 347 --CLGGGIITATDK 358 >gi|34762114|ref|ZP_00143122.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27888191|gb|EAA25249.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 343 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 117/365 (32%), Positives = 194/365 (53%), Gaps = 28/365 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV+ MSGGVDSSV A LLK GY+VIGVTL + + +D+ DA++VCD Sbjct: 3 KVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENS----------KDIEDAKKVCD 52 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H V + + F N VI F Y G TP PC+ C+ +KF L + + A+ + Sbjct: 53 KLGIIHKVVNIRKDFENIVIKYFLDGYKTGITPSPCIICDDEIKFKILFDIADKYKAEYV 112 Query: 142 ATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 ATGHY S+++ + ++ + +DQSY L+ + +L L FPL K+ Sbjct: 113 ATGHYTSVEYSKIF------SKYLLKSVHSIIKDQSYMLYRLSPDKLERLIFPLKSYSKQ 166 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A ++GL++ DK DSQ +CF ++G Y +K ++G+ + +G ILG+H G Sbjct: 167 EIREIALKIGLEVYDKKDSQGVCFAKEG-YKKFLKENLKDEIVKGNYIDKDGNILGQHEG 225 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 YTIGQRRGLG+ + +P+F+ + ++ +++G L ++ L IN+ +E Sbjct: 226 YQLYTIGQRRGLGINLSKPVFITEIKPQTNEIVLGEFSELFTDKVEL--INYKFSVGYEK 283 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 ++ + + R S + +N + +Y + + A GQ VF+ + V+ Sbjct: 284 --LEDLELLARPRFSSTGFYGKLIKNKNKIYFKYNEENTHNAKGQHIVFFY----DGFVV 337 Query: 379 GGGII 383 GGG I Sbjct: 338 GGGEI 342 >gi|58337130|ref|YP_193715.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus acidophilus NCFM] gi|227903706|ref|ZP_04021511.1| tRNA-methyltransferase [Lactobacillus acidophilus ATCC 4796] gi|73920126|sp|Q5FKU0|MNMA_LACAC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|58254447|gb|AAV42684.1| tRNA-methyltransferase [Lactobacillus acidophilus NCFM] gi|227868593|gb|EEJ76014.1| tRNA-methyltransferase [Lactobacillus acidophilus ATCC 4796] Length = 375 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 130/378 (34%), Positives = 188/378 (49%), Gaps = 23/378 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ S G C A +D D ++V Sbjct: 7 IRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDS---GVCTATEDYEDVKKVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + + V F Y G TP P V CN +KF L L AD Sbjct: 64 DKIGIPYYSINFEKEYWHRVFEYFLDEYKKGRTPNPDVMCNSQIKFKSFLEFAMDLDADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY ++ D M RP D +DQ+YFL +Q Q+ + FPL ++ K V Sbjct: 124 IAMGHYAKTIT----DANGVTHMMRPKDGNKDQTYFLSQLSQDQIKKVIFPLANLTKPQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A GL A K DS ICF+ + + + A G +V G+++G H G++ Sbjct: 180 REIALANGLVTAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPEGKVVGEHAGLM 237 Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 YTIGQR+GLG+ +P FVV D + +IV + + +Y + F Sbjct: 238 YYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSPLLYASRLKASDMSFF 295 Query: 317 EDAVVDGFK--CFVKIRSSQDPVPVFVQRNDDGVYVD--FEKSEVGVASGQACVFYTSDS 372 F+ C K R Q + V V+ + D VD F++ V GQA V Y Sbjct: 296 TGKPDHDFEMHCTAKFRYRQCDIGVTVKYHADDNTVDVYFDEPARAVTPGQALVLY---- 351 Query: 373 NEARVLGGGIISGSKRSD 390 N +GGG I + + D Sbjct: 352 NGEECIGGGNIDAAFQED 369 >gi|317047745|ref|YP_004115393.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pantoea sp. At-9b] gi|316949362|gb|ADU68837.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pantoea sp. At-9b] Length = 370 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 127/373 (34%), Positives = 200/373 (53%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAADDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGIKLHKVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADF 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + DG+ R + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 125 IATGHYVRRQDI---DGQSR--LLRGLDGNKDQSYFLYTLSHEQVAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ D + R A G I ++G+I+G H G++ Sbjct: 180 RRIAEQLDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGAIETVDGEIVGEHQGLM 237 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +T+GQR+GLG+ + +P +VV D +R+IV G L + ++++W+ Sbjct: 238 YHTLGQRKGLGIGGRKESNDDPWYVVDKDVARNRLIVAQGGDHPRLMSVGLIAQQLHWVD 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + +C VK R Q +P + DD + V F++ V GQ+ VFY D Sbjct: 298 ----RQPITAPLRCTVKTRYRQTDIPCEIIPHGDDRIEVRFDEPVAAVTPGQSAVFYLGD 353 Query: 372 SNEARVLGGGIIS 384 LGGGII Sbjct: 354 V----CLGGGIIE 362 >gi|126667269|ref|ZP_01738242.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Marinobacter sp. ELB17] gi|126628214|gb|EAZ98838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Marinobacter sp. ELB17] Length = 374 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 130/370 (35%), Positives = 187/370 (50%), Gaps = 23/370 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LLK GY V G+ ++ ++ ++ C A D+ DA+ V D I + Sbjct: 1 MSGGVDSSVAAWLLKEQGYQVEGLFMKNWDEDDGTEY---CTAMTDLADAQAVADHIGIK 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 + + + + V F S Y AG TP P + CN+ VKF L LGAD +ATGHY Sbjct: 58 LHTASFAAEYWDRVFEHFLSEYKAGRTPNPDILCNKEVKFRAFLDYAITLGADYIATGHY 117 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 R DDG + + + +D +DQSYFL A + ++ FP+G+++K VR +A Sbjct: 118 TRQCPL--DDGSGKAQLLKGLDDNKDQSYFLHAVSGDRIARTLFPVGELEKPEVRRIAEA 175 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 GL DK DS ICF+ + K+ D +K+ A G I G I+GRH G++ +TIGQ Sbjct: 176 QGLVTHDKKDSTGICFIGERKFTDFLKQYLP--AQPGTIETPEGDIIGRHQGLMYHTIGQ 233 Query: 267 RRGLGVA-----MGEPLFVVYLDKNSSRVIV--GPRESLEVHR-IYLREINWLGDGLFED 318 R+GLG+ EP +V D + +I G L R + ++W+ + Sbjct: 234 RQGLGIGGLNGYSDEPWYVAEKDLARNVLIAAQGKNHPLLFSRGLVSGPVDWVA----AE 289 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 A F+C K R Q V D GV V F+ ++ V GQ+ VFY + L Sbjct: 290 APSAKFRCMAKTRYRQPDQLCEVTVIDGGVKVVFDDAQRAVTPGQSAVFYDGEI----CL 345 Query: 379 GGGIISGSKR 388 GGG+I + R Sbjct: 346 GGGVIEHTWR 355 >gi|295692704|ref|YP_003601314.1| tRNA-specific 2-thiouridylase mnma [Lactobacillus crispatus ST1] gi|295030810|emb|CBL50289.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus ST1] Length = 375 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 131/387 (33%), Positives = 193/387 (49%), Gaps = 27/387 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ S G C A +D D ++V D Sbjct: 8 RVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDDTDDS---GVCTATEDYEDVKKVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F Y G TP P V CN +KF L L AD + Sbjct: 65 KIGIPYYSINFEKEYWHRVFEYFLDEYKKGRTPNPDVMCNSQIKFKSFLEFAMDLDADYI 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 A GHY ++ D M RP D +DQ+YFL +Q+Q+ + FPL ++ K VR Sbjct: 125 AMGHYAKTV----KDANGVTHMMRPKDGNKDQTYFLSQLSQEQISKVIFPLANLTKPQVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A GL A K DS ICF+ + + + A G +V +G+++G H G++ Sbjct: 181 EIALANGLATAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGKVVGEHAGLMY 238 Query: 262 YTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 YTIGQR+GLG+ +P FVV D + +IV + + +Y + F Sbjct: 239 YTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSPLLYASRLKASDMSFFT 296 Query: 318 DAVVDGFK--CFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F+ C K R Q + V V+ + D+ V F++ V GQA V Y + Sbjct: 297 GKPDHDFEMHCTAKFRYRQCDIGVTVKYHAADNTADVYFDEPARAVTPGQALVLYKGE-- 354 Query: 374 EARVLGGGIISGSKRSDAVEESLLSVI 400 LGGG I + + EE L ++ Sbjct: 355 --ECLGGGNIDAAYQ----EEKQLQLV 375 >gi|315038064|ref|YP_004031632.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus amylovorus GRL 1112] gi|325956515|ref|YP_004291927.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus acidophilus 30SC] gi|312276197|gb|ADQ58837.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus amylovorus GRL 1112] gi|325333080|gb|ADZ06988.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus acidophilus 30SC] gi|327183344|gb|AEA31791.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus amylovorus GRL 1118] Length = 375 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 129/378 (34%), Positives = 189/378 (50%), Gaps = 23/378 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A +D D ++V Sbjct: 7 IRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TDDAGVCTATEDYEDVKKVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + + V F + Y G TP P V CN +KF L L AD Sbjct: 64 DKIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLEFAMDLDADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY ++ D M RP D +DQ+YFL Q Q+ + FPL ++ K V Sbjct: 124 IAMGHYAKTV----KDANGVTHMMRPKDGNKDQTYFLSQLNQDQIKKVIFPLANLTKPQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A GL A K DS ICF+ + + + A G +V +G+++G H G++ Sbjct: 180 REIALANGLATAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGKVVGEHAGLM 237 Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 YTIGQR+GLG+ +P FVV D + +IV + + +Y + F Sbjct: 238 YYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSPLLYASRLKASDMSFF 295 Query: 317 EDAVVDGFK--CFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSDS 372 F+ C K R Q + V V+ + D+ V F++ V GQA V Y Sbjct: 296 TGKPDHDFEMHCSAKFRYRQCDIGVTVKYHAADNTADVYFDEPARAVTPGQALVLY---- 351 Query: 373 NEARVLGGGIISGSKRSD 390 N LGGG I + + D Sbjct: 352 NGEECLGGGNIDAAYQED 369 >gi|52841619|ref|YP_095418.1| tRNA-specific 2-thiouridylase MnmA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81603374|sp|Q5ZVQ1|MNMA_LEGPH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|52628730|gb|AAU27471.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|307610092|emb|CBW99633.1| hypothetical protein LPW_14011 [Legionella pneumophila 130b] Length = 361 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 122/371 (32%), Positives = 190/371 (51%), Gaps = 27/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK GY V G+ ++ + + C A +D+ DA+ VC+ Sbjct: 4 KVIVGMSGGVDSSVAAWLLKEQGYQVEGLFMKNW---EQDDHNDYCPAAKDLADAQAVCN 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + ++ + + + V F S Y G TP P V CN+ +KF+ L+ LGAD + Sbjct: 61 QLRIPLHTVNFSKEYWDRVFAYFLSEYEKGRTPNPDVLCNKEIKFNAFLNHALTLGADYI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY ++ + G G + + D E+DQ+YFL A + L FP+GD K +R Sbjct: 121 ATGHYAKNTI-EGSIG----YLFKAKDREKDQTYFLHAVEPEALSKTIFPIGDFTKPQIR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 + A+++GL K DS ICF+ + ++ + +A G+I G+ LG+H+G++ Sbjct: 176 EFAKQLGLVTHAKKDSTGICFIGEKRFKTFLNEFI--LAKPGEIKSTGGKTLGQHDGLMF 233 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313 YT+GQR+GLG+ + EP +VV D S+ + V L + I+WL D Sbjct: 234 YTLGQRQGLGIGGLQNSTDEPWYVVDKDIASNTLYVAQGSQHPMLYSQGLICGPIHWLAD 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDS 372 +E+ + CF K R Q + D+ YV F + + GQ VFY + Sbjct: 294 --YENHLP--LTCFAKTRYRQTDQACMISPPDNNQHYVMFSSPQRAITPGQFIVFYEKN- 348 Query: 373 NEARVLGGGII 383 + LGG I Sbjct: 349 ---QCLGGATI 356 >gi|237731114|ref|ZP_04561595.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Citrobacter sp. 30_2] gi|226906653|gb|EEH92571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Citrobacter sp. 30_2] Length = 383 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 133/396 (33%), Positives = 214/396 (54%), Gaps = 32/396 (8%) Query: 1 MVVSEATRLN--SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR 58 M+ A + N S+ + ++PK +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MLEYAALKFNVVSIPMSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEED 58 Query: 59 KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118 + C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + Sbjct: 59 DGEE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDI 115 Query: 119 DCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177 CN+ +KF L + LGAD +ATGHY+R DGK R + R +D +DQSYFL Sbjct: 116 LCNKEIKFKAFLEFAAEDLGADYIATGHYVRR---ADVDGKSR--LLRGLDGNKDQSYFL 170 Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA 237 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + + R Sbjct: 171 YTLGHEQIAQSLFPVGELEKPQVRKIAEDLGLITAKKKDSTGICFIGERKFREFLGRYLP 230 Query: 238 GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVI 291 A G I+ ++G+ +G+H G++ +T+GQR+GLG+ +P +VV D +N+ V+ Sbjct: 231 --AQPGKIITVDGEEIGQHQGLMYHTLGQRKGLGIGGTKEGTEDPWYVVDKDVENNILVV 288 Query: 292 VGPRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGV 348 E + + L ++++W+ F + +C VK R Q +P V+ D + + Sbjct: 289 AQGHEHPRLMSVGLVAQQLHWVDREPFTGTM----RCTVKTRYRQTDIPCTVKALDAERI 344 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 V F++ V GQ+ VFY N LGGGII Sbjct: 345 EVIFDEPVAAVTPGQSAVFY----NGEVCLGGGIIE 376 >gi|148980425|ref|ZP_01816047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrionales bacterium SWAT-3] gi|145961228|gb|EDK26541.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrionales bacterium SWAT-3] Length = 378 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 202/386 (52%), Gaps = 27/386 (6%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72 D+ + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + + C A +D Sbjct: 3 DISSGNSEKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNW---EEDDNEEYCTAAED 59 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 + DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 60 LADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEF 119 Query: 133 TRQ-LGADVLATGHYIRSRLYVGDDGKR--RRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 + L AD +A GHY+R ++ + + M R +D +DQSYFL+ + Q+ Sbjct: 120 ADEVLDADYIAMGHYVRRTFPTQEELEAGVKPEMLRGLDSNKDQSYFLYTLSSDQVARSL 179 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 FP+G+++K VR +A E L A K DS ICF+ + K+ + + + A GDI Sbjct: 180 FPVGELEKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGDIETPE 237 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMG-------EPLFVVYLD-KNSSRVIVGPRES--LE 299 G+++G+HNG++ +T+GQR+GL + +P FV D K + + V ++ L+ Sbjct: 238 GKVIGKHNGLMYHTLGQRKGLHIGGTKGGGGNEDPWFVGEKDLKRNVLIAVQGKDHPLLK 297 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVG 358 + +++W+ + + C VK R Q +P + +D+ + V F++ ++ Sbjct: 298 SEGLIASQLHWVN----RTPIAEVMTCTVKTRYRQTDIPCTIIPIDDENIKVIFDEPQIA 353 Query: 359 VASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY D LGGGII Sbjct: 354 VTPGQSAVFYQDDV----CLGGGIIE 375 >gi|89898460|ref|YP_515570.1| tRNA-specific 2-thiouridylase MnmA [Chlamydophila felis Fe/C-56] gi|123483134|sp|Q253W3|MNMA_CHLFF RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|89331832|dbj|BAE81425.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56] Length = 361 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 134/376 (35%), Positives = 193/376 (51%), Gaps = 25/376 (6%) Query: 23 VVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VVVAMSGGVDSSVVA LLK Y V+G+ ++ + +G C +D D +V Sbjct: 5 VVVAMSGGVDSSVVAYLLKNYTSYKVLGLFMKNWEEEDG---EGLCSTAKDYEDVEKVAG 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +Y + + +R V F + Y+ G TP P V CNR +KF L R+LG D L Sbjct: 62 QLDIPYYTVSFAKEYRERVFSRFLTGYSEGYTPNPDVLCNREIKFDLLQKKVRELGGDFL 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R V D ++ R +D ++DQSYFL T ++ L ++ FPLGD K VR Sbjct: 122 ATGHYCR----VSPDENGVNLL-RGIDPQKDQSYFLCGTRKESLENVIFPLGDKTKTEVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-ILGRHNGII 260 +A + GL A K DS ICF+ + + +++ LEG+IV + Q ++G H G Sbjct: 177 SIAAQAGLATAQKRDSTGICFIGKRPFKSFLEKFVPN--LEGNIVDYDSQRVVGHHEGAH 234 Query: 261 NYTIGQRRGLGVAMGE-PLFVVY--LDKNSSRVIVGPRESLEVH-RIYLREINWLGDGLF 316 YTIGQRRGL + E P +VV ++KN ++ G L + RE+NW Sbjct: 235 YYTIGQRRGLDLGGSEKPCYVVGKDMEKNIVYIVRGEDHPLLYQTELTARELNW----FV 290 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + V+ RS+ + + + R +D V V F + GQA FY + R Sbjct: 291 SPKSITTCSAKVRYRSNDEECEILL-RGEDEVLVRFASPVKAITPGQAIAFYDGE----R 345 Query: 377 VLGGGIISGSKRSDAV 392 LGGG+I S +V Sbjct: 346 CLGGGVIEISMTPQSV 361 >gi|194433661|ref|ZP_03065937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shigella dysenteriae 1012] gi|194418090|gb|EDX34183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shigella dysenteriae 1012] gi|320179167|gb|EFW54125.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Shigella boydii ATCC 9905] gi|332089265|gb|EGI94371.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shigella boydii 5216-82] gi|332092905|gb|EGI97973.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shigella dysenteriae 155-74] Length = 368 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 130/373 (34%), Positives = 205/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G++ Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGVHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ EP +VV D +N+ ++ E + + L ++++W+ Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVD 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 F + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY--- 349 Query: 372 SNEARVLGGGIIS 384 N LGGGII Sbjct: 350 -NGEVCLGGGIIE 361 >gi|323497848|ref|ZP_08102859.1| tRNA-specific 2-thiouridylase MnmA [Vibrio sinaloensis DSM 21326] gi|323317076|gb|EGA70076.1| tRNA-specific 2-thiouridylase MnmA [Vibrio sinaloensis DSM 21326] Length = 369 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 122/377 (32%), Positives = 199/377 (52%), Gaps = 32/377 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R ++G++ + M R +D +DQSYFL+ + Q+ FP+G+++K V Sbjct: 125 IAMGHYVRRTF--PENGEKAQ-MLRGLDSNKDQSYFLYTLSSDQVERSLFPVGELEKPEV 181 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E L A K DS ICF+ + K+ + + + A GDI G+++G+H G++ Sbjct: 182 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGDIETPEGKVIGQHQGLM 239 Query: 261 NYTIGQRRGLGVAMG-------EPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLREI 308 +T+GQR+GL + EP FV DK+ R ++ L+ + ++ Sbjct: 240 YHTLGQRKGLHIGGQKGGGGNEEPWFVG--DKDLKRNVLIAVQGKDHPLLKSEGLIASQL 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVF 367 +W+ + D KC VK R Q +P + +D+ + V F++ ++ V GQ+ VF Sbjct: 298 HWVD----RTPIKDVLKCTVKTRYRQTDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAVF 353 Query: 368 YTSDSNEARVLGGGIIS 384 Y + LGGGII Sbjct: 354 YQDEV----CLGGGIIE 366 >gi|262066347|ref|ZP_06025959.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium periodonticum ATCC 33693] gi|291379911|gb|EFE87429.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium periodonticum ATCC 33693] Length = 343 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 118/362 (32%), Positives = 188/362 (51%), Gaps = 22/362 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV+ MSGGVDSSV A LLK GY+VIGVTL + + +D+ DA++VCD Sbjct: 3 KVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEE----------SSKDIEDAKKVCD 52 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H V + + F N VI F Y +G+TP PCV C+ +KF L V + AD + Sbjct: 53 RLGIIHEVVNIRKNFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFEVANKYKADYV 112 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + + ++ + +DQSY L+ ++L L FPL K+ +R Sbjct: 113 ATGHYTSVEY---SETFSKYLLKSVHSIIKDQSYMLYRLAPEKLERLIFPLKPYSKQEIR 169 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL++ DK DSQ +CF ++G Y + +K ++G+ + G+ILG+H G Sbjct: 170 EIALKIGLEVHDKKDSQGVCFAKEG-YKEFLKENLKDEIVKGNYIDKEGKILGQHEGYQL 228 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQRRGLG+ + + +F+ + ++ +++G L I L + + FE + Sbjct: 229 YTIGQRRGLGINLSKIVFITEIRAKTNEIVLGEFSELFTDEIKLTNYKFAVE--FEK--I 284 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + R S + +N D + + + A GQ VF+ + V+GGG Sbjct: 285 KDLNLLARPRFSSTGFYGKLIKNSDKICFKYNERNAHNAKGQHVVFFYDNF----VIGGG 340 Query: 382 II 383 I Sbjct: 341 EI 342 >gi|330815569|ref|YP_004359274.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia gladioli BSR3] gi|327367962|gb|AEA59318.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia gladioli BSR3] Length = 390 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 132/381 (34%), Positives = 180/381 (47%), Gaps = 36/381 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D Sbjct: 2 KKQRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R R G R + + D +DQSYFL Q QL FPLG+M K Sbjct: 119 ETIATGHYARVREREG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEMPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A ++GL A K DS ICF+ + + D + R G + G+ +G H G Sbjct: 174 RVREIAEQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPEGKRVGEHIG 231 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE-----I 308 + YT GQR+G+G+ GEP FV D S+ + V + E + RE + Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAGKDIASNTLYVA--QGHEHPWLLSRELVAGNV 289 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG------VYVDFEKSEVGVASG 362 +W+ + DGF C K R Q P R G + F+ + V G Sbjct: 290 SWVAG----EPPADGFACGAKTRYRQADAPCSFARAKAGEAGEARFSLGFDTPQWAVTPG 345 Query: 363 QACVFYTSDSNEARVLGGGII 383 Q+ V Y + LGGGII Sbjct: 346 QSAVLYDGEI----CLGGGII 362 >gi|291085497|ref|ZP_06353231.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Citrobacter youngae ATCC 29220] gi|291071151|gb|EFE09260.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Citrobacter youngae ATCC 29220] Length = 383 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 133/396 (33%), Positives = 214/396 (54%), Gaps = 32/396 (8%) Query: 1 MVVSEATRLN--SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR 58 M+ A + N S+ + ++PK +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MLEYAALKFNVVSIPMSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEED 58 Query: 59 KASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118 + C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + Sbjct: 59 DGEE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDI 115 Query: 119 DCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177 CN+ +KF L + LGAD +ATGHY+R DGK R + R +D +DQSYFL Sbjct: 116 LCNKEIKFKAFLEFAAEDLGADYIATGHYVRR---ADVDGKSR--LLRGLDGNKDQSYFL 170 Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA 237 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + + R Sbjct: 171 YTLGHEQIAQSLFPVGELEKPQVRKIAEDLGLITAKKKDSTGICFIGERKFREFLGRYLP 230 Query: 238 GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVI 291 A G I+ ++G+ +G+H G++ +T+GQR+GLG+ +P +VV D +N+ V+ Sbjct: 231 --AQPGKIITVDGEDIGQHQGLMYHTLGQRKGLGIGGTKEGTEDPWYVVDKDVENNILVV 288 Query: 292 VGPRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGV 348 E + + L ++++W+ F + +C VK R Q +P V+ D + + Sbjct: 289 AQGHEHPRLMSVGLVAQQLHWVDREPFTGTM----RCTVKTRYRQTDIPCTVKALDAERI 344 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 V F++ V GQ+ VFY N LGGGII Sbjct: 345 EVIFDEPVAAVTPGQSAVFY----NGEVCLGGGIIE 376 >gi|152997270|ref|YP_001342105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Marinomonas sp. MWYL1] gi|205816876|sp|A6W0E1|MNMA_MARMS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|150838194|gb|ABR72170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Marinomonas sp. MWYL1] Length = 390 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 124/374 (33%), Positives = 192/374 (51%), Gaps = 27/374 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D +V+V MSGGVDSSV A +L + GY V G+ ++ ++ ++ C A D+ DA+ V Sbjct: 30 DKKVIVGMSGGVDSSVSALILMQQGYQVEGLFMKNWDEDDGTE---YCTAKDDLADAQAV 86 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L L AD Sbjct: 87 SDKLGIKLHTANFASEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEYAMALNAD 146 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R G+ ++ + +D +DQSYFL+A + ++ FP+G+++K Sbjct: 147 YIATGHYVRRGEKNGEP-----LLLKGLDGNKDQSYFLYAVGKDEIAKTLFPVGELEKTE 201 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA E GL +K DS ICF+ + ++ D +++ A GDI L G + RH+G+ Sbjct: 202 VRRLAEEFGLITHNKKDSTGICFIGERRFKDFLEQYLP--AQPGDIETLEGDKIARHHGL 259 Query: 260 INYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWL 311 + +TIGQR+GLG+ +P +VV D + +IV G ESL + +W+ Sbjct: 260 MYHTIGQRQGLGIGGLAKYSDDPWYVVEKDLERNVLIVTQGGQHESLFKTHLIADNFDWV 319 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 + C K R Q + DG V V F + + V GQ+ VFY Sbjct: 320 A----REKPTFPLTCKAKCRYRQSDQECTINELADGRVEVSFVEPQRAVTPGQSVVFYVD 375 Query: 371 DSNEARVLGGGIIS 384 D LGGGII+ Sbjct: 376 DV----CLGGGIIN 385 >gi|184200523|ref|YP_001854730.1| tRNA-specific 2-thiouridylase MnmA [Kocuria rhizophila DC2201] gi|205816858|sp|B2GL48|MNMA_KOCRD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|183580753|dbj|BAG29224.1| putative tRNA uridine-sulfurtransferase [Kocuria rhizophila DC2201] Length = 383 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 140/386 (36%), Positives = 202/386 (52%), Gaps = 32/386 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G++V GV L L + + R G+ CC +D DA R Sbjct: 1 MRVLAAMSGGVDSAVAAARAVDAGHEVTGVHLALSRT-PGTLRTGARGCCTIEDSRDAWR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + +YV+D+ ERF+ V+ F + YAAG TP PC+ CN +KF+ LL LG Sbjct: 60 AAEKLGIPYYVWDFSERFQADVVDDFVAEYAAGRTPNPCMRCNEKIKFAALLEKALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197 D + TGHY +++ G DG + + R D +DQSY L T +QL FPL + K Sbjct: 120 DAVCTGHY--AKVVEGPDGHKE--LHRAADWAKDQSYVLGVLTAEQLEHAIFPLAETPSK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRH 256 VR A E GL +A K DS DICF+ G D + + L+ G IV G LG H Sbjct: 176 AQVRAEAEERGLSVATKPDSHDICFIPDG---DTRGWLADHMDLDPGRIVDTEGNELGEH 232 Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G YT+GQRRGL + G+P FV+ + ++ V+VGP + L + + +W G Sbjct: 233 RGAQAYTVGQRRGLHIGRPAPDGKPRFVLEIRPKTNEVVVGPEQLLAIDVMEGIRPSWAG 292 Query: 313 DGLFEDAVV--------DGFKCFVKIRSSQDPVP--VFVQRNDDG--VYVDFEKSEVGVA 360 E A + + F+ V++R+ DP P ++ R++ ++V + ++ GVA Sbjct: 293 LPPREVAALGADPKARSEEFEVTVQVRAHGDPAPARAWLTRSEGTPRLHVRLDTAQRGVA 352 Query: 361 SGQACVFYTSDSNEARVLGGGIISGS 386 GQ V Y RVLG I + Sbjct: 353 PGQTMVLYQG----TRVLGQATIDAA 374 >gi|254506120|ref|ZP_05118264.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio parahaemolyticus 16] gi|219550938|gb|EED27919.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio parahaemolyticus 16] Length = 374 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 120/379 (31%), Positives = 196/379 (51%), Gaps = 31/379 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 124 Query: 141 LATGHYIRSRLYVGD--DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +A GHY+R + D + M R +D +DQSYFL+ + Q+ FP+G+++K Sbjct: 125 IAMGHYVRRTFPTQEELDAGAKPEMLRGLDSNKDQSYFLYTLSSDQVARSLFPVGELEKP 184 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E L A K DS ICF+ + K+ + + + A G+I G+++G+H G Sbjct: 185 EVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGNIETPEGKVIGKHQG 242 Query: 259 IINYTIGQRRGLGVAMG-------EPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLR 306 ++ +T+GQR+GL + EP FV DK+ R ++ L+ + Sbjct: 243 LMYHTLGQRKGLHIGGQKGGGGNEEPWFVG--DKDLKRNVLIAVQGKDHPLLKSEGLIAS 300 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQAC 365 +++W+ + D KC VK R Q +P + +D+ + V F++ ++ V GQ+ Sbjct: 301 QLHWVD----RTPITDVLKCTVKTRYRQTDIPCTIIPIDDENIKVIFDEPQIAVTPGQSA 356 Query: 366 VFYTSDSNEARVLGGGIIS 384 VFY + LGGGII Sbjct: 357 VFYQGEV----CLGGGIIE 371 >gi|329942704|ref|ZP_08291483.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydophila psittaci Cal10] gi|313847883|emb|CBY16878.1| tRNA-methyltransferase [Chlamydophila psittaci RD1] gi|325507227|gb|ADZ18865.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydophila psittaci 6BC] gi|328814964|gb|EGF84953.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydophila psittaci Cal10] gi|328914545|gb|AEB55378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydophila psittaci 6BC] Length = 362 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 134/373 (35%), Positives = 193/373 (51%), Gaps = 30/373 (8%) Query: 23 VVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VVVAMSGGVDSSVVA LLK+ Y V+G+ ++ + ++ G C +D D RV + Sbjct: 5 VVVAMSGGVDSSVVAYLLKKMTSYRVLGIFMKNWEEEDSN---GLCSTAKDYEDVERVAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +Y + +R V F Y+ G TP P V CNR +KF L +LG D L Sbjct: 62 QLDIPYYTVSFAREYRERVFSRFLKEYSQGYTPNPDVLCNREIKFDLLQKKVVELGGDFL 121 Query: 142 ATGHYIRSRLYVGDDGKRRRI-MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY R D +R+ + + R D +DQSYFL T Q+ L ++ FPLGDM K V Sbjct: 122 ATGHYCRL------DVRRQGVELLRGKDPHKDQSYFLCGTRQESLKNVLFPLGDMTKTEV 175 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-ILGRHNGI 259 R +A + GL A K DS ICF+ + + +++ LEGDI+ + Q I+G H G Sbjct: 176 RAIAAQAGLATAQKRDSTGICFIGKRPFKSFLEQFVPN--LEGDIMDYDSQKIVGSHEGA 233 Query: 260 INYTIGQRRGLGVAMGE-PLFVVY--LDKNSSRVIVGPRESLEVHR-IYLREINWLGDGL 315 YTIGQRRGL + E P +VV ++KN ++ G L + + +E+NW + Sbjct: 234 HYYTIGQRRGLDIGGSEKPCYVVGKDMEKNIVYIVRGEDHPLLYQQELTAKELNWF---V 290 Query: 316 FEDAVVDGFKCFVKI--RSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 +++ +C K+ RS + + D V V F + GQ FY + Sbjct: 291 SPESIT---RCSAKVRYRSEDEECEILHTGEQDKVRVRFASPVKAITPGQTIAFYDGE-- 345 Query: 374 EARVLGGGIISGS 386 R LGGG+I S Sbjct: 346 --RCLGGGVIEVS 356 >gi|145641507|ref|ZP_01797085.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae R3021] gi|145273798|gb|EDK13666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae 22.4-21] Length = 362 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 127/378 (33%), Positives = 208/378 (55%), Gaps = 32/378 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + +V+ MSGGVDSSV A +L++ GY V G+ ++ + + C A D+ DA+ Sbjct: 2 RQKKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LG 137 VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + LG Sbjct: 59 VCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLG 118 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ FP+G++KK Sbjct: 119 ADYIATGHYVRR---TGDNENAK--LLRGLDANKDQSYFLYTLSHKQVGQSLFPVGEIKK 173 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR +A ++GL A K DS ICF+ + K+ D + R A G+I ++G+I+GRH+ Sbjct: 174 PIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDGEIIGRHD 231 Query: 258 GIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLRE 307 G++ +T+GQR+GLG+ A E +VV D ++ +IV PR L + + Sbjct: 232 GLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQ 289 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACV 366 ++W+ + + + +C VK R Q +P ++ DD + V F++ + V GQ+ V Sbjct: 290 LHWVD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDEIIRVIFDEPQSAVTPGQSAV 345 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII+ Sbjct: 346 FYLGEV----CLGGGIIA 359 >gi|325955195|ref|YP_004238855.1| tRNA-specific 2-thiouridylase mnmA [Weeksella virosa DSM 16922] gi|323437813|gb|ADX68277.1| tRNA-specific 2-thiouridylase mnmA [Weeksella virosa DSM 16922] Length = 397 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 123/401 (30%), Positives = 196/401 (48%), Gaps = 47/401 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDSSV A LLK GY+VIG+ ++ +N + + C +D DA + Sbjct: 3 RVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMRNWNDASVT-LEDECPWIEDSADALLTAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +N+ V D ++ ++ + Y G TP P V CNR +KF L +LGAD + Sbjct: 62 KLNIPFQVIDMSASYKERIVDYMFAEYEQGRTPNPDVLCNREIKFDLFLKTALELGADYV 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R ++ +GK + + +D +DQSYFL +Q+QL FP+G+++K VR Sbjct: 122 ATGHYARKNSFIDKNGKEIFQLIKGVDNNKDQSYFLCQLSQEQLSKALFPIGNLEKSEVR 181 Query: 202 DLAREMGLDIADKSDSQDICFV-------------------------------QQGKYFD 230 +A+ + L ADK DSQ +CF+ ++ K+F Sbjct: 182 RIAKNLDLVTADKKDSQGLCFIGKVSLPEFLQQQLRPKKGKIIEIPKSSSIYQKEEKHFP 241 Query: 231 VVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSR 289 +++ A +G+I+G H G +T GQR+GLGV EPLFV+ D + Sbjct: 242 TIEKKLENQAAAISYKKTDGEIVGEHQGAHFFTRGQRKGLGVGGKAEPLFVLATDVQENI 301 Query: 290 VIVG-----PRESLEVHRIYLREINWLGDGLFEDAVVDG--FKCFVKIRSSQDPVPVFVQ 342 + G P + I EI+W+ + + A+ +G + +IR Q + Sbjct: 302 IYTGQGHDHPGLLKDALFIQADEIHWIREDM---ALKEGESLEVQARIRYRQPLQKATLH 358 Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 + +G++V F+ + + GQ C +Y D ++G G+I Sbjct: 359 QTKNGLFVAFDTPQSAITEGQFCAWYIED----ELVGSGVI 395 >gi|229819858|ref|YP_002881384.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Beutenbergia cavernae DSM 12333] gi|259495825|sp|C5C2D6|MNMA_BEUC1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|229565771|gb|ACQ79622.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Beutenbergia cavernae DSM 12333] Length = 380 Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 142/380 (37%), Positives = 201/380 (52%), Gaps = 28/380 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ A+SGGVDS+V AA G+DV+GV + L +R A R GS CC+ +D DARR Sbjct: 1 MRVLAALSGGVDSAVAAARAVDAGHDVVGVHMALSRTR-AQHRTGSRGCCSIEDASDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D E F + V+ F S YAAG TP PCV CN +KFS LL LG Sbjct: 60 AADVLGIPFYVWDLSEEFTDTVVADFLSEYAAGRTPNPCVRCNEHIKFSALLDRGLALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197 D +ATGHY +R+ G G + R D +DQSY L ++L FPLG++ K Sbjct: 120 DAVATGHY--ARIERGAAGVPE--LHRAADAAKDQSYVLAVMGPERLARSLFPLGEVPTK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 ++VR A GL ++ K DS DICFV G + R + G + G ++ +G+ +G H+ Sbjct: 176 DAVRAEAAARGLSVSAKPDSYDICFVADGDTQGFL-RSHLG-SQPGPVLDTDGREVGAHD 233 Query: 258 GIINYTIGQRRGL----GVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G +T+GQR+GL A G P +VV + S+ V+VGP E L V + WL + Sbjct: 234 GAYAFTVGQRKGLRLPRPAADGRPRYVVDVRTASNTVVVGPAELLSVRDVLGERPVWLAE 293 Query: 314 GLFE--DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG---VYVDFEKSEVGVASGQACVFY 368 E DA V V+ + P + +DDG + + G+A+GQ+ V Y Sbjct: 294 EPHEWTDATVQ-----VRAHGAALPARIRTVTDDDGASHLAARLAEPLRGLAAGQSVVAY 348 Query: 369 TSDSNEARVLGGGIISGSKR 388 + RVLG ++ + R Sbjct: 349 ----DGTRVLGQATVAATGR 364 >gi|39546313|ref|NP_460204.2| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167991976|ref|ZP_02573075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168264253|ref|ZP_02686226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|197263918|ref|ZP_03163992.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200391023|ref|ZP_03217634.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|24638322|sp|Q8ZPZ4|MNMA_SALTY RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|197242173|gb|EDY24793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199603468|gb|EDZ02014.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205329792|gb|EDZ16556.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205347303|gb|EDZ33934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|267993013|gb|ACY87898.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157775|emb|CBW17268.1| Probable tRNA [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912222|dbj|BAJ36196.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223852|gb|EFX48915.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 368 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 130/381 (34%), Positives = 208/381 (54%), Gaps = 30/381 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + ++PK +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ Sbjct: 1 MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADL 55 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 56 ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + LGAD +ATGHY+R R V +GK R + R +D +DQSYFL+ +Q+ FP+ Sbjct: 116 AEDLGADYIATGHYVR-RADV--NGKSR--LLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR +A ++GL A K DS ICF+ + K+ D + R A G I+ ++G Sbjct: 171 GELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDE 228 Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL- 305 +G H G++ +T+GQR+GLG+ +P +VV D +N+ ++ E + + L Sbjct: 229 IGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGHEHPRLMSVGLI 288 Query: 306 -REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363 ++++W+ F + +C VK R Q +P + NDD + V F++ V GQ Sbjct: 289 AQQLHWVDREPFTGTL----RCTVKTRYRQTDIPCTINALNDDRIEVIFDEPVAAVTPGQ 344 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY+ + LGGGII Sbjct: 345 SAVFYSGEV----CLGGGIIE 361 >gi|313884882|ref|ZP_07818634.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eremococcus coleocola ACS-139-V-Col8] gi|312619573|gb|EFR31010.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eremococcus coleocola ACS-139-V-Col8] Length = 374 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 137/377 (36%), Positives = 195/377 (51%), Gaps = 26/377 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K RV+V MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 4 KKARVIVGMSGGVDSSVAALLLKEAGYDVIGLFMKNWDD---TDENGVCTATEDYKDVAL 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGA Sbjct: 61 VAEKIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +A GHY + V D + R +D +DQ+YFL +Q QL FPLG ++K Sbjct: 121 DYVAMGHYAQ----VETDADGTVHLLRGLDDNKDQTYFLSQLSQDQLKKSLFPLGHLQKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A + GL A K DS +CF+ + + + + N G +V L+GQI+G H G Sbjct: 177 QVREIAEKAGLATAKKKDSTGVCFIGERNFNEFLS--NYLPNKSGKMVTLDGQIMGDHAG 234 Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP-RESLEVHRIYL--REINWL 311 ++ YTIGQR GLG+ EP FVV D ++ + VG ++ YL +I++ Sbjct: 235 LMYYTIGQRHGLGIGGGGESNEPWFVVGKDLETNTLYVGQGYHHPNLYSDYLDASQIHFT 294 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVFYT 369 D + F+C K R Q V V V N+D V F+ + GQA VFY Sbjct: 295 VD----RDMPQEFECTAKFRYRQKDVKVKVVLNEDQESGRVYFQDPVRAITPGQAVVFY- 349 Query: 370 SDSNEARVLGGGIISGS 386 + LGGGII + Sbjct: 350 ---DGLECLGGGIIDAA 363 >gi|307545655|ref|YP_003898134.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase [Halomonas elongata DSM 2581] gi|307217679|emb|CBV42949.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Halomonas elongata DSM 2581] Length = 370 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 125/374 (33%), Positives = 192/374 (51%), Gaps = 27/374 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL G+DV G+ ++ ++ ++ C A +D+ DA VC Sbjct: 7 KVIVGMSGGVDSSVSAQLLLEQGFDVEGLFMKNWDEDDGTE---YCTAKEDLADAEAVCA 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + ++ + + V F + Y AG TP P + CNR +KF L LGAD + Sbjct: 64 KLGIHLHTANFAAEYWDNVFEHFLAEYQAGRTPNPDILCNREIKFKVFLEYAEMLGADWI 123 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R DG R + + +D +DQSYFL A + + FP+G+++K VR Sbjct: 124 ATGHYVRR---AERDGHAR--LLKGLDANKDQSYFLHAVPEAAIARSLFPVGELEKSEVR 178 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 D+A GL A K DS ICF+ + ++ D +++ A G I +G ++G H G++ Sbjct: 179 DIAERHGLATARKKDSTGICFIGERRFRDFLRQYLP--AQPGTIATPDGDVIGEHMGLMY 236 Query: 262 YTIGQRRGLGVA-----MGEPLFVVY--LDKNSSRVIVGPRES-LEVHRIYLREINWLGD 313 YT+GQR+GLG+ P +V L++N V+ G L + ++W+ Sbjct: 237 YTLGQRQGLGIGGLANYSDAPWYVAGKDLERNVLTVVQGKHHPLLYTDSLATEAMDWVAG 296 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 +G + K R QD VP ++ DDGV V F+ + V GQ+ V Y D Sbjct: 297 ---TPPAREG-RYHAKTRYRQDDVPCTMRVAEDDGVEVHFDDPQRAVTPGQSLVLYDGDI 352 Query: 373 NEARVLGGGIISGS 386 LGGG+I + Sbjct: 353 ----CLGGGVIRAT 362 >gi|215486387|ref|YP_002328818.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O127:H6 str. E2348/69] gi|215264459|emb|CAS08822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O127:H6 str. E2348/69] Length = 368 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 130/373 (34%), Positives = 204/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G++ Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ EP +VV D +N+ ++ E + + L ++++W+ Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVD 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSD 371 F + +C VK R Q +P V+ D D + V F++ V GQ+ VFY Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDADRIEVIFDEPVAAVTPGQSAVFY--- 349 Query: 372 SNEARVLGGGIIS 384 N LGGGII Sbjct: 350 -NGEVCLGGGIIE 361 >gi|307719725|ref|YP_003875257.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Spirochaeta thermophila DSM 6192] gi|306533450|gb|ADN02984.1| probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Spirochaeta thermophila DSM 6192] Length = 352 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 122/350 (34%), Positives = 180/350 (51%), Gaps = 15/350 (4%) Query: 25 VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84 +AMSGGVDSSV A LL G +V+G+T N+ +G ++ AR V + Sbjct: 1 MAMSGGVDSSVTAHLLLSAGIEVVGLTFIRVNTPAEVDHEGFS---EEARAAREVASHLG 57 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLAT 143 + H+V + + + + V+ Y +G TP PCV CNRT+KF L+ R+ L AD +AT Sbjct: 58 IEHHVLNLHDLYTSRVLRRAWEEYRSGRTPNPCVLCNRTLKFGHLVRYAREVLRADGIAT 117 Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 GHY +R+YV +G + R ++QSYFL T + L FPLGD K+ +R Sbjct: 118 GHY--ARIYVDAEGGVH--LMRGKAGTKEQSYFLAQTRPEDLRHAYFPLGDQTKDEIRTY 173 Query: 204 AREMGLDIADKSDSQDICFVQQG-KYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 AR G+ A++ +SQD+CF G ++ + ++ G I+ G +LGRH GI + Sbjct: 174 ARHHGIPTAERPESQDVCFNTTGLRFGEFLEEFFEEGGEPGPILDERGNVLGRHRGIHVF 233 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY-LREINWLGDGLFEDAVV 321 TIGQRRGLGVA+G P++V +D + VIV RE +HR+ +NW F Sbjct: 234 TIGQRRGLGVALGRPVYVKAIDPERNAVIVTDREEALLHRVVEAAGVNW-----FAPPPS 288 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + +IR + P + D + V F + + V GQ Y D Sbjct: 289 GPVEVLAQIRYAHRAAPAVLTHEGDRIRVRFHEPQRAVTPGQLLAAYVGD 338 >gi|222032885|emb|CAP75625.1| hypothetical protein LF82_1359 [Escherichia coli LF82] gi|312945695|gb|ADR26522.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O83:H1 str. NRG 857C] Length = 368 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 134/375 (35%), Positives = 205/375 (54%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G++ Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ EP +VV D ++ +IV PR + V I L +++W Sbjct: 237 YHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGHEHPR-LMSVGLIAL-QLHW 294 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYT 369 + F + +C VK R Q +P V+ D D + V F++ V GQ+ VFY Sbjct: 295 VDREPFTGTM----RCTVKTRYRQTDIPCTVKALDADRIEVIFDEPVAAVTPGQSAVFY- 349 Query: 370 SDSNEARVLGGGIIS 384 N LGGGII Sbjct: 350 ---NGEVCLGGGIIE 361 >gi|168239141|ref|ZP_02664199.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194738212|ref|YP_002114241.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713714|gb|ACF92935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288113|gb|EDY27500.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 368 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 130/381 (34%), Positives = 208/381 (54%), Gaps = 30/381 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + +NPK +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ Sbjct: 1 MSENPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 56 ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + LGAD +ATGHY+R R V +GK R + R +D +DQSYFL+ +Q+ FP+ Sbjct: 116 AEDLGADYIATGHYVR-RADV--NGKSR--LLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR +A ++GL A K DS ICF+ + K+ D + R A G I+ ++G Sbjct: 171 GELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDE 228 Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL- 305 +G H G++ +T+GQR+GLG+ +P +VV D +N+ ++ E + + L Sbjct: 229 IGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGHEHPRLMSVGLI 288 Query: 306 -REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363 ++++W+ F + +C VK R Q +P + +DD + V F++ V GQ Sbjct: 289 AQQLHWVDREPFTGTL----RCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQ 344 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY+ + LGGGII Sbjct: 345 SAVFYSGEV----CLGGGIIE 361 >gi|62184976|ref|YP_219761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydophila abortus S26/3] gi|73920121|sp|Q5L6D1|MNMA_CHLAB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|62148043|emb|CAH63795.1| tRNA-methyltransferase [Chlamydophila abortus S26/3] Length = 362 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 132/370 (35%), Positives = 191/370 (51%), Gaps = 30/370 (8%) Query: 23 VVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VVVAMSGGVDSSVVA LLK+ Y V+G+ ++ + ++ G C +D D RV + Sbjct: 5 VVVAMSGGVDSSVVAYLLKKYTSYRVLGIFMKNWEEEDSN---GLCSTAKDYEDVERVAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +Y + +R V F Y+ G TP P V CNR +KF L +LG D L Sbjct: 62 QLDIPYYTVSFAREYRERVFSRFLKEYSQGYTPNPDVLCNREIKFDLLQKKVVELGGDFL 121 Query: 142 ATGHYIRSRLYVGDDGKRRRI-MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY R D K +R+ + R D +DQSYFL T + L ++ FPLGDM K V Sbjct: 122 ATGHYCRL------DVKSQRVGLLRGKDPHKDQSYFLCGTHPESLKNVLFPLGDMTKREV 175 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-ILGRHNGI 259 R +A + GL A K DS ICF+ + + +++ + EG+I+ + Q I+G H G Sbjct: 176 RSIAAQAGLATAQKRDSTGICFIGKRPFKSFLEQFVPNV--EGEIIDYDSQKIVGNHEGA 233 Query: 260 INYTIGQRRGLGVAMGE-PLFVVY--LDKNSSRVIVGPRESLEVHR-IYLREINWLGDGL 315 YTIGQRRGL + E P +VV ++KN ++ G L + + +E+NW + Sbjct: 234 HYYTIGQRRGLDIGGSEKPCYVVGKDMEKNIVYIVRGEDHPLLYQQELTAKELNWF---V 290 Query: 316 FEDAVVDGFKCFVKI--RSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 +++ +C K+ RS + + D V V F + GQ FY + Sbjct: 291 SPESIT---RCSAKVRYRSPDEECEILHTGTQDTVRVRFTSPVKAITPGQTIAFYDGE-- 345 Query: 374 EARVLGGGII 383 R LGGGII Sbjct: 346 --RCLGGGII 353 >gi|110641310|ref|YP_669040.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli 536] gi|191173062|ref|ZP_03034595.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli F11] gi|218558015|ref|YP_002390928.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli S88] gi|218689086|ref|YP_002397298.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli ED1a] gi|306814017|ref|ZP_07448190.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli NC101] gi|331657197|ref|ZP_08358159.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli TA206] gi|123344119|sp|Q0TIU0|MNMA_ECOL5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205822319|sp|A1AA27|MNMA_ECOK1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205822366|sp|Q1RD20|MNMA_ECOUT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|110342902|gb|ABG69139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 536] gi|190906607|gb|EDV66213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli F11] gi|218364784|emb|CAR02474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli S88] gi|218426650|emb|CAR07478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli ED1a] gi|294491197|gb|ADE89953.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli IHE3034] gi|305852654|gb|EFM53102.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli NC101] gi|307627395|gb|ADN71699.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli UM146] gi|323187621|gb|EFZ72928.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli RN587/1] gi|323953180|gb|EGB49046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli H252] gi|323957959|gb|EGB53671.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli H263] gi|331055445|gb|EGI27454.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli TA206] Length = 368 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 130/373 (34%), Positives = 204/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G++ Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ EP +VV D +N+ ++ E + + L ++++W+ Sbjct: 237 YHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVD 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSD 371 F + +C VK R Q +P V+ D D + V F++ V GQ+ VFY Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDADRIEVIFDEPVAAVTPGQSAVFY--- 349 Query: 372 SNEARVLGGGIIS 384 N LGGGII Sbjct: 350 -NGEVCLGGGIIE 361 >gi|170768217|ref|ZP_02902670.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia albertii TW07627] gi|170122983|gb|EDS91914.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia albertii TW07627] Length = 368 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 129/373 (34%), Positives = 205/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V +GK R + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 124 IATGHYVR-RADV--NGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G++ Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ EP +VV D +N+ ++ E + + L ++++W+ Sbjct: 237 YHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVD 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 F + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY--- 349 Query: 372 SNEARVLGGGIIS 384 N LGGGII Sbjct: 350 -NGEVCLGGGIIE 361 >gi|265767771|ref|ZP_06095303.1| tRNA methyl transferase [Bacteroides sp. 2_1_16] gi|263252443|gb|EEZ23971.1| tRNA methyl transferase [Bacteroides sp. 2_1_16] Length = 362 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 127/378 (33%), Positives = 190/378 (50%), Gaps = 47/378 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGG+DS+ +L+ GY+++GVT++++ G + DAR + Sbjct: 7 RVLVGMSGGIDSTATCMMLQEQGYEIVGVTMRVW--------------GDEPQDARELAA 52 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + HYV D F+N ++ F Y G TP PCV CN KF L+ +LG D + Sbjct: 53 RMGIEHYVADERVPFKNTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCDWI 112 Query: 142 ATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 ATGHY R +Y+ GDD K +DQSYFL+ Q L FPLG+ Sbjct: 113 ATGHYSRLEERNGHIYIVAGDDDK------------KDQSYFLWRLGQDVLRRCIFPLGN 160 Query: 195 MKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNG 250 K++VRD RE G + K +S ++CF+ +G Y D ++ + E G V G Sbjct: 161 YTKQTVRDYLREKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDAEVGPGWFVSSEG 219 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 LG+H G YTIGQR+GL +A+G+P +V+ ++ + V++G L + + N Sbjct: 220 VKLGQHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAGQLRAEYMVAEQDNI 279 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + ED + V+IR P+P V+R +DG + V F +A GQ+ VFY Sbjct: 280 VD----EDELFACPDLAVRIRYRSRPIPCRVKRLEDGHLLVRFLAEASAIAPGQSAVFYE 335 Query: 370 SDSNEARVLGGGIISGSK 387 RVLGG I+ + Sbjct: 336 G----RRVLGGAFIASQR 349 >gi|253567176|ref|ZP_04844626.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 3_2_5] gi|251944007|gb|EES84526.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 3_2_5] Length = 362 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 127/378 (33%), Positives = 190/378 (50%), Gaps = 47/378 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGG+DS+ +L+ GY+++GVT++++ G + DAR + Sbjct: 7 RVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARELAA 52 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + HYV D F+N ++ F Y G TP PCV CN KF L+ +LG D + Sbjct: 53 RMGIEHYVADERVPFKNTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCDWI 112 Query: 142 ATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 ATGHY R +Y+ GDD K +DQSYFL+ Q L FPLG+ Sbjct: 113 ATGHYSRLEERNGHIYIVAGDDDK------------KDQSYFLWRLGQDVLRRCIFPLGN 160 Query: 195 MKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNG 250 K++VRD RE G + K +S ++CF+ +G Y D ++ + E G V G Sbjct: 161 YTKQTVRDYLREKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDAEVGPGWFVSSEG 219 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 LG+H G YTIGQR+GL +A+G+P +V+ ++ + V++G L + + N Sbjct: 220 VKLGQHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAGQLRAEYMVAEQDNI 279 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + ED + V+IR P+P V+R +DG + V F +A GQ+ VFY Sbjct: 280 VD----EDELFACPDLAVRIRYRSRPIPCRVKRLEDGRLLVRFLAEASAIAPGQSAVFYE 335 Query: 370 SDSNEARVLGGGIISGSK 387 RVLGG I+ + Sbjct: 336 G----RRVLGGAFIASQR 349 >gi|256846579|ref|ZP_05552036.1| tRNA methyl transferase [Fusobacterium sp. 3_1_36A2] gi|294784166|ref|ZP_06749467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 3_1_27] gi|256718348|gb|EEU31904.1| tRNA methyl transferase [Fusobacterium sp. 3_1_36A2] gi|294488236|gb|EFG35581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 3_1_27] Length = 343 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 117/365 (32%), Positives = 195/365 (53%), Gaps = 28/365 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV+ MSGGVDSSV A LLK GY+VIGVTL + + +D+ DA++VC+ Sbjct: 3 KVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENS----------KDIEDAKKVCN 52 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + +SH V + + F N VI F Y++G TP PCV C+ +KF L + + A+ + Sbjct: 53 KLGISHEVINIRKDFENIVIKYFLDGYSSGITPSPCVICDDEIKFKILFDIADKYKAEYV 112 Query: 142 ATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 ATGHY S ++ + ++ + +DQSY L+ + +L L FPL K Sbjct: 113 ATGHYTSVEYSEIF------SKYLLKSVHSIIKDQSYMLYRISPDKLERLIFPLKPYTKH 166 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A ++GL++ DK DSQ +CF ++G Y + +K ++G+ + +G ILG+H G Sbjct: 167 EIREIALKIGLEVYDKKDSQGVCFAKEG-YKEFLKENLKDEIVKGNYIDKDGNILGQHEG 225 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 YTIGQRRGLG+ + +P+F+ + ++ +++G L + L IN+ +E Sbjct: 226 YQLYTIGQRRGLGINLSKPIFITEIKPQTNEIVLGEFSELFTDIVEL--INYKFSVEYEK 283 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 ++ + + R S + ++ + +Y + + A GQ VF+ + V+ Sbjct: 284 --LENLELLARPRFSSTGFYGKLIKDKNKIYFKYNEENAHNAKGQHIVFFY----DGFVV 337 Query: 379 GGGII 383 GGG I Sbjct: 338 GGGEI 342 >gi|229822980|ref|ZP_04449050.1| hypothetical protein GCWU000282_00272 [Catonella morbi ATCC 51271] gi|229787793|gb|EEP23907.1| hypothetical protein GCWU000282_00272 [Catonella morbi ATCC 51271] Length = 375 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 136/376 (36%), Positives = 198/376 (52%), Gaps = 24/376 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVV+ MSGGVDSSV A LLK GY+VIG+ ++ ++ + G C A +D D +V + Sbjct: 7 RVVLGMSGGVDSSVAALLLKEQGYEVIGLFMKNWDD---TDENGHCTATEDYQDVVKVAE 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F Y AG TP P V CN+ VKF L +LGAD + Sbjct: 64 KIGIPYYSVNFEKEYWDRVFEYFLREYRAGRTPNPDVMCNKEVKFKAFLDYAMELGADYI 123 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 A GHY RS D + R +D +DQ+YFL +Q QL FPLG ++K VR Sbjct: 124 AMGHYARSE----RDENGVVHLLRGLDNNKDQTYFLSQLSQAQLQKALFPLGHLQKSEVR 179 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS +CF+ + + + + N G +V L+GQ+ G H G++ Sbjct: 180 ALAEEAGLATAKKKDSTGVCFIGERNFNEFLS--NYLPNKPGKMVTLDGQVKGEHMGLMY 237 Query: 262 YTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314 YTIGQR+GLG+ EP FV+ D+ + + VG +L + E+++ Sbjct: 238 YTIGQRQGLGIGGGGTSNEPWFVIGKDQTTQTLYVGQGFHHPNLYSDYLTASEVSFTAPN 297 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY--VDFEKSEVGVASGQACVFYTSDS 372 L + V + F+C K R Q + V V+ + D V F++ + GQA VFY D Sbjct: 298 LSD--VPEEFRCTAKFRYRQQDIGVTVKLSQDKTQATVMFDEPVRAITPGQAVVFY--DG 353 Query: 373 NEARVLGGGIISGSKR 388 E LGGG+I + + Sbjct: 354 QEC--LGGGLIDAAYK 367 >gi|315635922|ref|ZP_07891184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arcobacter butzleri JV22] gi|315479901|gb|EFU70572.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arcobacter butzleri JV22] Length = 367 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 128/381 (33%), Positives = 204/381 (53%), Gaps = 34/381 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ-DVYDAR 77 K+ ++VV MSGGVDSSV A LLK+ GYDV+G+ ++ + KGS C + + DA+ Sbjct: 3 KNKKIVVGMSGGVDSSVTALLLKQQGYDVVGLFMRNWEY----GIKGSQCPNRIEFEDAK 58 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 +V I + D+ + +R+ V F G TP P + CN+ +KF+ L+ + +G Sbjct: 59 KVGALIGIEVRGKDFVKEYRDRVFDVFLEGLKQGLTPNPDILCNKEIKFNVFLNEAKSMG 118 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD++ATGHY + Y K ++ P D +DQSYFL A + +QL FPLGD+ K Sbjct: 119 ADMIATGHYAKIAKY-----KDHFVLDTPKDNTKDQSYFLHALSSEQLSHAMFPLGDLTK 173 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + VR++AR L ++DK DS ICF+ K+ + + + A+ GDI+ NG+++G+H Sbjct: 174 KEVREIARAHNLPVSDKKDSTGICFIGNQKFDEFITQHLQ--AIPGDILDENGKVIGKHK 231 Query: 258 GIINYTIGQRRGLGVA----------MGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IY 304 G++ YT+GQR+G+G+ +P FV D N+ ++ L + + + Sbjct: 232 GLVCYTLGQRKGIGLGGIKGNESENNTHKPWFVASKDVVNNTLTIVQDTNHPLLMSKTVE 291 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 ++W + E+A G K ++R Q V+ N++ V V F+ + V GQ Sbjct: 292 ASHMHW----VLEEAPKVGDKLMAQVRYRQQKQACTVVEANEEKVVVQFDNPQRAVTLGQ 347 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + V Y+ D LGGG IS Sbjct: 348 SLVLYSGD----YCLGGGFIS 364 >gi|224542883|ref|ZP_03683422.1| hypothetical protein CATMIT_02077 [Catenibacterium mitsuokai DSM 15897] gi|224524213|gb|EEF93318.1| hypothetical protein CATMIT_02077 [Catenibacterium mitsuokai DSM 15897] Length = 376 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 132/375 (35%), Positives = 197/375 (52%), Gaps = 27/375 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 RVV+ +SGGVDS+V A LLK+ GY+VI V ++ ++S + G+ C +D Sbjct: 3 RVVLGLSGGVDSAVAAYLLKKQGYEVICVFMRNWDSSLNNDILGNPTNDDDVCPQEKDYQ 62 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ V + + D+ + + + V F YA G TP P + CN+ +KF L + Sbjct: 63 DAQAVATHLGLEIRRVDFIKEYWDQVFTYFLEEYAKGRTPNPDILCNKHIKFKAFLDYAK 122 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 + AD +ATGHY R V +GK +M R +D +DQ+YFL Q QL + FP+G+ Sbjct: 123 SIDADYIATGHYARV---VHTEGKES-VMLRGVDNNKDQTYFLCQLNQNQLNNSLFPIGE 178 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQIL 253 + K VR +A E+ L +A K DS ICF+ + + + +K N A G +V + + +++ Sbjct: 179 LTKPEVRRIAEELDLPVAHKKDSTGICFIGERDFREFLK--NYIPAKSGKMVDIVSKKVI 236 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309 G H GI+ YTIGQR+GLG+ GEP FVV D + + + + +S L H + ++N Sbjct: 237 GDHQGIMYYTIGQRKGLGIGGNGEPWFVVGKDYDKNILYIAQGDSNKWLLSHGALITDVN 296 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368 W+ E + C K R Q V + D+ +YV F+K V GQA VFY Sbjct: 297 WVSKTKPEGE----YDCTAKFRYRQKDNDVSLHFIDETTLYVTFKKPIKAVTPGQAAVFY 352 Query: 369 TSDSNEARVLGGGII 383 D LGGG I Sbjct: 353 DGDV----CLGGGTI 363 >gi|238026255|ref|YP_002910486.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia glumae BGR1] gi|237875449|gb|ACR27782.1| TRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia glumae BGR1] Length = 393 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 131/379 (34%), Positives = 179/379 (47%), Gaps = 32/379 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D Sbjct: 2 KKQRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R R G R + + +D +DQSYFL Q QL RFPLG+M K Sbjct: 119 ETIATGHYARVRERDG-----RFELLKALDQTKDQSYFLHRLNQAQLSKTRFPLGEMPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A +GL A K DS ICF+ + + D + R G + +G+ +G H G Sbjct: 174 QVREIAARIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TRPGPMRTPDGRRVGEHIG 231 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT GQR+G+G+ GEP FV D S+ + V L H + ++W Sbjct: 232 LAFYTFGQRKGIGLGGSRDGSGEPWFVAGKDIASNTLYVAQGHDHPWLLSHELVAGNVSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG------VYVDFEKSEVGVASGQA 364 + + DGF C K R Q R G + F+ + V GQ+ Sbjct: 292 VAG----EPPADGFVCGAKTRYRQADSACSFARAKAGEAGEPRFSLAFDAPQWAVTPGQS 347 Query: 365 CVFYTSDSNEARVLGGGII 383 V Y + LGGGII Sbjct: 348 AVLYDGEV----CLGGGII 362 >gi|256383871|gb|ACU78441.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma mycoides subsp. capri str. GM12] gi|256384702|gb|ACU79271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma mycoides subsp. capri str. GM12] gi|296455514|gb|ADH21749.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 375 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 128/378 (33%), Positives = 197/378 (52%), Gaps = 27/378 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 +VVV +SGGVDSSV LL + GY+V G+ ++ ++S + G+ C QD Sbjct: 4 KVVVGLSGGVDSSVACYLLLQQGYEVEGLFMRNWDSATNNDILGNININNDICPQEQDYL 63 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VT 133 DA+ V D +N+ + D+ + + + V + F Y TP P + CN+ +KF L+ Sbjct: 64 DAKAVADKLNIKLHRVDFIKEYWDYVFLYFIEEYKKARTPNPDILCNKYIKFDKFLNYAI 123 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 QL AD +A GHY + + ++ + + D +DQ+YFL Q QL FPL Sbjct: 124 NQLNADYIAMGHYAKVEF---NKTTKQYELFKASDTNKDQTYFLSQLNQNQLSKTLFPLA 180 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252 ++ KE VR +A E L A+K DS ICF+ + + D ++ N + G+IV + ++ Sbjct: 181 NLTKEQVRKIALEQNLITANKKDSTGICFIGERHFTDFLQ--NYIPSQTGNIVDIKTNKV 238 Query: 253 LGRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLR 306 LG+H GI+ YTIGQR+G+ ++ M EP +V DK+ + I+ + L ++ Sbjct: 239 LGQHIGIMYYTIGQRKGIHLSGMSEPYYVA--DKDVEKKILYVCSTSDQSYLYSTSCFVN 296 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQAC 365 +INW+ D + V+ FKC K R Q+ V V++ DD Y V FEK + GQ Sbjct: 297 DINWILDLSKYVSDVNQFKCQAKFRYRQNDNNVVVKKIDDNNYQVIFEKPLKAITIGQQA 356 Query: 366 VFYTSDSNEARVLGGGII 383 VFY D LGG +I Sbjct: 357 VFYLDDI----CLGGAVI 370 >gi|283478712|emb|CAY74628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erwinia pyrifoliae DSM 12163] Length = 384 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 121/375 (32%), Positives = 203/375 (54%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ G+ V G+ ++ + + C A +D+ DA+ VCD Sbjct: 22 KVIVGMSGGVDSSVSAWLLQQQGFQVEGLFMKNWEE---DDDEAYCTAAEDLADAQAVCD 78 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 79 KLGIYLHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 138 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + D G + R++ R +D +DQSYFL+ + + FP+G++ K V Sbjct: 139 IATGHYVRRQ----DMGGKSRLL-RGLDGNKDQSYFLYTLGHEHIAQSLFPVGELAKPEV 193 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ + + R A G I+ ++G +G+H G++ Sbjct: 194 RRIAEQLKLVTAKKKDSTGICFIGERKFTEFLARYLP--AQPGAIISVDGVNVGQHQGLM 251 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ A +P +VV D ++ ++V PR L + ++++W Sbjct: 252 YHTLGQRKGLGIGGRKEANEDPWYVVDKDVTNNLLVVAQGHDHPR--LMSQGLTAQQLHW 309 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYT 369 + + ++ +C VK R Q+ +P V D + + V F+ V GQ+ VFY Sbjct: 310 VDRSVLSASL----RCTVKTRYRQEDIPCTVIPLDAERIEVRFDYPVAAVTPGQSAVFYL 365 Query: 370 SDSNEARVLGGGIIS 384 + LGGG+I Sbjct: 366 DEV----CLGGGVIE 376 >gi|330432069|gb|AEC17128.1| tRNA-specific 2-thiouridylase MnmA [Gallibacterium anatis UMN179] Length = 384 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 129/375 (34%), Positives = 203/375 (54%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A +L++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 26 KVIVGMSGGVDSSVSAYILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 82 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 83 KLGIKLHKINFAAEYWDNVFEHFLQEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 142 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R GDD + + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 143 IATGHYVRRR---GDDENAQ--LLRGLDGNKDQSYFLYTLSHKQVGQSLFPVGELEKPVV 197 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ D + R A GDI ++G+++GRH+G++ Sbjct: 198 RQIAEDLGLVTAKKKDSTGICFIGERKFKDFLARYLP--AQPGDIRTVDGEVIGRHDGLM 255 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GL + A E +VV D + +IV PR L + +++W Sbjct: 256 YHTLGQRKGLRIGGLKNAGDEAWYVVDKDLEHNELIVAQGHNHPR--LFSKGLIAGQLHW 313 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + +C VK R Q VP + NDD + V ++ ++ V GQ+ VFY Sbjct: 314 VD----RQPLKQPLRCTVKTRYRQQDVPCQIIPLNDDLIEVRLDEPQIAVTPGQSAVFYL 369 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 370 DE----LCLGGGIIE 380 >gi|312866787|ref|ZP_07727000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus parasanguinis F0405] gi|311097570|gb|EFQ55801.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus parasanguinis F0405] Length = 373 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 138/381 (36%), Positives = 199/381 (52%), Gaps = 25/381 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D D V Sbjct: 6 ETRVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 63 ADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++K Sbjct: 123 YVATGHYAR----VSRDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA E GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G+ Sbjct: 179 VRRLAEEAGLATAKKKDSTGICFIGEKNFKEFLG--NYLPAQPGRMMTIDGRDMGEHAGL 236 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + YTIGQR GLG+ P FVV D + + + VG E+L ++ ++++ Sbjct: 237 MYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSQNILYVGQGFYHEALMSTSLHASQVHFT 296 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 D + E+ ++ C K R Q V V D V F + + + GQA VFY + Sbjct: 297 RD-MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE 352 Query: 372 SNEARVLGGGIISGSKRSDAV 392 LGGG+I + R V Sbjct: 353 ----ECLGGGLIDNAYRDGKV 369 >gi|259908739|ref|YP_002649095.1| tRNA-specific 2-thiouridylase MnmA [Erwinia pyrifoliae Ep1/96] gi|224964361|emb|CAX55870.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erwinia pyrifoliae Ep1/96] Length = 369 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 121/375 (32%), Positives = 203/375 (54%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ G+ V G+ ++ + + C A +D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGFQVEGLFMKNWEE---DDDEAYCTAAEDLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIYLHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + D G + R++ R +D +DQSYFL+ + + FP+G++ K V Sbjct: 124 IATGHYVRRQ----DMGGKSRLL-RGLDGNKDQSYFLYTLGHEHIAQSLFPVGELAKPEV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ + + R A G I+ ++G +G+H G++ Sbjct: 179 RRIAEQLKLVTAKKKDSTGICFIGERKFTEFLARYLP--AQPGAIISVDGVNVGQHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ A +P +VV D ++ ++V PR L + ++++W Sbjct: 237 YHTLGQRKGLGIGGRKEANEDPWYVVDKDVTNNLLVVAQGHDHPR--LMSQGLTAQQLHW 294 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYT 369 + + ++ +C VK R Q+ +P V D + + V F+ V GQ+ VFY Sbjct: 295 VDRSVLSASL----RCTVKTRYRQEDIPCTVIPLDAERIEVRFDYPVAAVTPGQSAVFYL 350 Query: 370 SDSNEARVLGGGIIS 384 + LGGG+I Sbjct: 351 DEV----CLGGGVIE 361 >gi|170691401|ref|ZP_02882566.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia graminis C4D1M] gi|170143606|gb|EDT11769.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia graminis C4D1M] Length = 381 Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 128/373 (34%), Positives = 184/373 (49%), Gaps = 29/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV MSGGVDSSV A LLK GYDV+G+ ++ + S+ C QD D V D Sbjct: 5 KVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L LGA+ + Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R + R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVR-----ENNGRFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKTKVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++ L A K DS ICF+ + + D + R G + +G+++G H G+ Sbjct: 177 EIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLP--TQPGPMKTTDGKVVGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YT GQR+G+G+ GEP FV D S+ + V L H + +W+ Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAGKDIPSNTLYVAQGHDHPWLLSHTLSAGNTSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRND-DGVY-VDFEKSEVGVASGQACVFYTS 370 + +GF C K R Q D F + N +G++ + F+ ++ V GQ+ V Y Sbjct: 295 ----EPPAEGFACGAKTRYRQADARCTFSRANQREGLFELTFDDAQWAVTPGQSAVLYDG 350 Query: 371 DSNEARVLGGGII 383 D LGGGII Sbjct: 351 DV----CLGGGII 359 >gi|315925181|ref|ZP_07921397.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621552|gb|EFV01517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudoramibacter alactolyticus ATCC 23263] Length = 367 Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 135/371 (36%), Positives = 187/371 (50%), Gaps = 24/371 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR+VV MSGGVDSSV A LKR G+DVIG+ ++ ++ + G C A +D D +RV Sbjct: 1 MRIVVGMSGGVDSSVAALQLKRAGHDVIGIFMKNWDE---TDENGVCTATEDYEDVKRVS 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GAD 139 + + + +Y ++E+ +++ V F + Y G TP P V CN+ +KF + ++ GAD Sbjct: 58 EALAIPYYTVNFEKEYQDRVFAYFLAEYKRGRTPNPDVLCNKEIKFKAFMDYAMKVAGAD 117 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 LATGHY R D M + +D +DQ+YFL Q QL FP+GD+ K Sbjct: 118 KLATGHYARIDR---DPASGVFRMLKGIDTGKDQTYFLCQLGQAQLEKTLFPIGDLPKSE 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA L A K DS ICF+ + + + R A G I L+G + GRHNG+ Sbjct: 175 VRRLAEAHHLITAGKKDSTGICFIGERNFRQFLSRYLP--AKPGLIKDLSGNVKGRHNGL 232 Query: 260 INYTIGQRR---GLGVAMGEPLFVVY--LDKNSSRVIVGP-RESLEVHRIYLREINWLGD 313 + YT+GQRR G GEP FVV L +N V+ G +L + +NW+ Sbjct: 233 MYYTLGQRRGLGIGGQGTGEPWFVVRKDLSENVLYVVQGAGHPALYSTSLRASAMNWIAG 292 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + F C K R Q V V R+D + VDFEK + V GQ V Y + Sbjct: 293 ----ETPAASFGCTAKFRYRQPDQAVRVTPRSDTTIAVDFEKLQRAVTPGQEVVLYDGEI 348 Query: 373 NEARVLGGGII 383 LGG I Sbjct: 349 ----CLGGATI 355 >gi|163790364|ref|ZP_02184796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Carnobacterium sp. AT7] gi|159874435|gb|EDP68507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Carnobacterium sp. AT7] Length = 374 Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 134/374 (35%), Positives = 201/374 (53%), Gaps = 26/374 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A +LK+ GYDV+G+ ++ ++ + G C A +D D V + Sbjct: 8 RVVVGMSGGVDSSVTALVLKQQGYDVVGIFMKNWDD---TDEFGMCTATEDYNDVALVAN 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+++ + V F Y G TP P V CN+ +KF L +LGAD + Sbjct: 65 QIGIPYYSINFEKQYWDKVFTYFLEEYKKGRTPNPDVMCNKEIKFKAFLDYAIELGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R +D +DQ+YFL +Q+QL FPLG M+K VR Sbjct: 125 ATGHYAQ----VERDENGVTHMLRGVDNNKDQTYFLNQLSQEQLAKTLFPLGGMQKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A E GL A K DS +CF+ + + + + A G+++ ++G+I G+H+G++ Sbjct: 181 RIAEEAGLATAKKKDSTGVCFIGERDFKKFL--MTYLPAQPGNMMTVDGEIKGQHDGLMY 238 Query: 262 YTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314 YTIGQR+GLG+ +P FVV D ++ + VG E L + ++++ + Sbjct: 239 YTIGQRQGLGIGGGGKSSDPWFVVGKDLETNTLYVGQGFNHEWLLATHLEASDLHFTTNE 298 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV--YVDFEKSEVGVASGQACVFYTSDS 372 E + V FKC K R Q V V N+DG V+F++ + GQA VFY Sbjct: 299 --EKSRV--FKCTAKFRYRQADTGVTVHLNEDGTAATVEFDEPVRAITPGQAVVFY---- 350 Query: 373 NEARVLGGGIISGS 386 + LGGG I + Sbjct: 351 DGMECLGGGTIDAA 364 >gi|76789009|ref|YP_328095.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydia trachomatis A/HAR-13] gi|123606993|sp|Q3KM75|MNMA_CHLTA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|76167539|gb|AAX50547.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydia trachomatis A/HAR-13] Length = 358 Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 133/367 (36%), Positives = 195/367 (53%), Gaps = 27/367 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 V+VAMSGGVDSSVVA LLK+ G Y+V+G+ ++ + + + G C A +D D R+ + Sbjct: 5 VIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN---GECTATKDFRDVERIAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +Y + + ++ V F YA G TP P V CNR +KF L R+L D L Sbjct: 62 QLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGDFL 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R G DG + R +D +DQSYFL T + L ++ FPLG + K VR Sbjct: 122 ATGHYCRG----GADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGVYKTEVR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHNGII 260 +A+E GL A K DS ICF+ + + +++ A GDI+ + Q++GRH G Sbjct: 175 RIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADSP--GDIIDFDTQQVVGRHEGAH 232 Query: 261 NYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYL-REINWLGDGLF 316 YTIGQRRGL + M +P +V+ ++KN ++ G L + L +E+NW Sbjct: 233 YYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYRQELLAKELNWFVP--L 290 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 ++ ++ K V+ RS + V+ D V V F+ V GQ FY D Sbjct: 291 QEPMICSAK--VRYRSPDEKCSVY-PLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI---- 343 Query: 377 VLGGGII 383 LGGG+I Sbjct: 344 CLGGGVI 350 >gi|315634990|ref|ZP_07890271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aggregatibacter segnis ATCC 33393] gi|315476252|gb|EFU67003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aggregatibacter segnis ATCC 33393] Length = 383 Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 125/373 (33%), Positives = 206/373 (55%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+ MSGGVDSSV A +L++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 25 KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---CTAAADLADAQAVCD 81 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGA+ Sbjct: 82 KLGIKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGANY 141 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R DD + + R +D +DQSYFL+ +++Q+ FP+GD++K V Sbjct: 142 IATGHYVRRR--GADDNAQ---LLRGLDANKDQSYFLYTLSKKQVGQSLFPVGDIEKPIV 196 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ D + R A G+I + G I+GRH+G++ Sbjct: 197 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVEGDIIGRHDGLM 254 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +T+GQR+GLG+ A E +VV D ++ +IV +L + ++++W+ Sbjct: 255 YHTLGQRKGLGIGGVKGASEEAWYVVEKDLVNNELIVAQGHDHSALLSTGLIAQQLHWVD 314 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 + + +C VK R Q VP ++ +D+ + V F++ ++ V GQ+ VFY + Sbjct: 315 ----RQPIREPLRCTVKTRYRQTDVPCTIEPIDDESIKVIFDEPQIAVTPGQSAVFYLDE 370 Query: 372 SNEARVLGGGIIS 384 LGGGII Sbjct: 371 V----CLGGGIIE 379 >gi|255311088|ref|ZP_05353658.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis 6276] Length = 358 Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 133/367 (36%), Positives = 194/367 (52%), Gaps = 27/367 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 V+VAMSGGVDSSVVA LLK+ G Y+V+G+ ++ + + + G C A +D D R+ + Sbjct: 5 VIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN---GECTATKDFRDVERIAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +Y + + ++ V F YA G TP P V CNR +KF L R+L D L Sbjct: 62 QLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGDFL 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R G DG + R +D +DQSYFL T + L ++ FPLG M K VR Sbjct: 122 ATGHYCRG----GADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTEVR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHNGII 260 +A+E GL A K DS ICF+ + + +++ A GDI+ + Q++GRH G Sbjct: 175 RIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADSP--GDIIDFDTQQVVGRHEGAH 232 Query: 261 NYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYL-REINWLGDGLF 316 YTIGQRRGL + M +P +V+ ++ N ++ G L + L +E+NW Sbjct: 233 YYTIGQRRGLNIGGMEKPCYVLSKNMENNIVYIVRGEDHPLLYRQELLAKELNWFVP--L 290 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 ++ ++ K V+ RS + V+ D V V F+ V GQ FY D Sbjct: 291 QEPMICSAK--VRYRSPDEKCSVY-PLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI---- 343 Query: 377 VLGGGII 383 LGGG+I Sbjct: 344 CLGGGVI 350 >gi|223041989|ref|ZP_03612173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus minor 202] gi|223017246|gb|EEF15674.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus minor 202] Length = 389 Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 126/372 (33%), Positives = 208/372 (55%), Gaps = 28/372 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++ MSGGVDSSV A +L++ GY V G+ ++ + + C A D+ DA+ V D Sbjct: 31 KVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---CTAAADLADAQAVAD 87 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F S Y AG TP P + CN+ +KF L + LGAD Sbjct: 88 KLGMKLHKINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 147 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R GDD + + R +D +DQSYFL+A +++Q+ FP+G+++K V Sbjct: 148 IATGHYVRRS---GDDENAQ--LLRGLDTNKDQSYFLYALSKKQVGQSLFPVGEIEKPIV 202 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ D + R A G+I ++G+++GRH+G++ Sbjct: 203 RKIAEDLGLATAKKKDSTGICFIGERKFKDFLARFLP--AQPGEIRTVDGKVVGRHDGLM 260 Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +T+GQR+GLG+ EP +VV D ++ ++V +L + ++NW+ Sbjct: 261 YHTLGQRKGLGIGGVKGLSEEPFYVVEKDLINNVLVVAQGHDNSALLSTGLIASQLNWVD 320 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 + + +C VK R Q+ +P +Q DD + V F++ ++ V GQ+ VFY + Sbjct: 321 ----LQPIRENLRCTVKTRYRQEDIPCEIQPIDDNTIRVMFDEPQIAVTPGQSAVFYLGE 376 Query: 372 SNEARVLGGGII 383 LGGGII Sbjct: 377 V----CLGGGII 384 >gi|253828114|ref|ZP_04870999.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Helicobacter canadensis MIT 98-5491] gi|253511520|gb|EES90179.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Helicobacter canadensis MIT 98-5491] Length = 349 Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 119/372 (31%), Positives = 198/372 (53%), Gaps = 38/372 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARRV 79 +V++ MSGGVDSS A LL++ GY V G+ L+L++ + D Y + ++ Sbjct: 3 KVLLLMSGGVDSSYCAYLLQKQGYSVYGIYLKLHDKEEK----------HDYYTRNIQKC 52 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +++N+ + + D E F+ +V F SY G TP PC CN VKF+ + + LG + Sbjct: 53 AESLNIPYQIVDERELFKKSVYDYFVDSYKKGLTPNPCAMCNPNVKFNIAFKLAKDLGCE 112 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + + +G+ + + +D +DQSYFLF + + + FPLGD KKE Sbjct: 113 FVATGHYAQIK-----NGR----IAQAVDTHKDQSYFLFGLKPEWIEKIIFPLGDKKKEE 163 Query: 200 VRDLA-REMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 ++ +A +E+ + DSQ+ICFV+ Y DV+K+ + +GD++ G +G H Sbjct: 164 IKPIALKELPWLGTLETYKDSQEICFVENS-YIDVLKK-HHKTEQKGDVLDSKGNKIGTH 221 Query: 257 NGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G + YTIG+R+G + P +V+ ++ + +I G +E L +++ ++ + Sbjct: 222 KGYMQYTIGKRKGFTIKGALTPHYVLKINPQDNTIIAGSKEELATNKVQALNLSLPKEWF 281 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFV----QRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 ++ V+D C VKIR +P + N D + + ++S GVA+GQA V Y Sbjct: 282 QDNKVLD---CEVKIRYKSHKIPAQITLMSNGNQDIITANLKESAYGVANGQALVLY--- 335 Query: 372 SNEARVLGGGII 383 N VLGGG I Sbjct: 336 -NGNEVLGGGFI 346 >gi|325266287|ref|ZP_08132966.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Kingella denitrificans ATCC 33394] gi|324982249|gb|EGC17882.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Kingella denitrificans ATCC 33394] Length = 389 Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 129/374 (34%), Positives = 188/374 (50%), Gaps = 22/374 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ +VV +SGGVDSSV AALLKR G +V GV +Q + + + C QD DA Sbjct: 29 KNQNIVVGLSGGVDSSVTAALLKRGGANVRGVFMQNWEDDDSDE---YCSIKQDSLDAMA 85 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + + ++ ++++ V F Y AG TP P V CN +KF L GA Sbjct: 86 VADIVGIDIDIVNFAAQYKDKVFAYFLQEYQAGRTPNPDVLCNAEIKFKCFLDYAVAEGA 145 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + G + R D +DQSYFL+ QL FPLG ++K Sbjct: 146 EAIATGHYARKEVRDG-----VHYLLRGADGNKDQSYFLYRLQPYQLQKALFPLGHLEKP 200 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR LA E GL A K DS ICF+ + + + +++ G++V G+I+G H G Sbjct: 201 EVRRLAVEFGLPTAAKKDSTGICFIGERPFREFLQKYLP--THNGNMVTPEGKIVGEHVG 258 Query: 259 IINYTIGQRRGLGV-AMGEPLFVV--YLDKNSSRVIVGP-RESLEVHRIYLREINWLGDG 314 + YTIGQR+GLG+ GEP FV L KN V+ G E L + + +++W Sbjct: 259 LTFYTIGQRKGLGIGGAGEPWFVAGKNLPKNELLVVQGHDHELLYTRSLQMNQLSWT--- 315 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 L E + C + R + D +DD + F++ + V GQ+ V Y + Sbjct: 316 LPEKPREGRYTCKTRYRMT-DAACTLQYLSDDTAELQFDEPQWAVTHGQSAVLYDGEV-- 372 Query: 375 ARVLGGGIISGSKR 388 LGGGII+ + + Sbjct: 373 --CLGGGIITATDK 384 >gi|150003570|ref|YP_001298314.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides vulgatus ATCC 8482] gi|205810521|sp|A6KZ28|MNMA2_BACV8 RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|149931994|gb|ABR38692.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides vulgatus ATCC 8482] Length = 351 Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 119/363 (32%), Positives = 184/363 (50%), Gaps = 22/363 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++ MSGG DSSV A LL+ GY+V G+T + Y + + + DAR +C+ Sbjct: 9 KVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFYEKENDT---------EYLEDARALCE 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +N+ H +D + FR +I F + Y AG TP+PC CN +K+ L ++ ++G Sbjct: 60 RLNIPHLTYDVRDTFRKTIIDYFINEYMAGHTPVPCTLCNNYLKWPLLKKISDEMGIYHF 119 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R R G + +D ++DQS+FL+ Q+ L + P+G++ K VR Sbjct: 120 ATGHYVRRRFINGCYH-----ITTGVDPDKDQSFFLWGLPQEILQRMLLPMGNLTKARVR 174 Query: 202 DLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 ++A E G L A K DS +CF + K + G L G G + RH G Sbjct: 175 EIAAERGFLKAAHKRDSLGVCFCPMDYRTFLHKELPEGSILPGKFFDEMGNFIARHKGYP 234 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQRRGLG+ + +FV + ++VI+ ++LE + L+E + L + Sbjct: 235 FYTIGQRRGLGIDLNRAVFVKEIIPAENKVILSDLKALEKTEMRLKEWHITNPALLLNK- 293 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 D ++ R + V +Q D+ ++V + +A GQA FY D VLGG Sbjct: 294 -DDIIVKIRYRKQANRCTVTLQ-PDNTLHVQLHEPLTAIAPGQAAAFYRDDV----VLGG 347 Query: 381 GII 383 GII Sbjct: 348 GII 350 >gi|19705225|ref|NP_602720.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|81479885|sp|Q8R5Z5|MNMA2_FUSNN RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|19713176|gb|AAL94019.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 343 Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 114/362 (31%), Positives = 192/362 (53%), Gaps = 22/362 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV+ MSGGVDSSV A LLK GY+VIG+TL + + +D+ D ++VCD Sbjct: 3 KVVIGMSGGVDSSVSAYLLKEQGYEVIGITLNQHLEENS----------KDIEDTKKVCD 52 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H V + + F N VI F Y +G+TP PC+ C+ +KF L + + A+ + Sbjct: 53 KLGIIHEVVNIRKDFENIVIKYFLEGYNSGKTPSPCIICDDEIKFKILFDIADKYNAEYV 112 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + + ++ + +DQSY L+ + +L L FPL D K+ +R Sbjct: 113 ATGHYTSVEY---SEVFSKYLLKSVHSIIKDQSYMLYRLSPDKLERLIFPLKDYSKQEIR 169 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++ L++ DK DSQ +CF ++G Y + +K + G+ + NG ILG+H G Sbjct: 170 EIALKIDLEVHDKKDSQGVCFAKEG-YKEFLKENLRDEIVRGNFIDKNGNILGQHEGYQL 228 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQRRGLG+ + +P+F+ + ++ +++G L + ++ L IN +E + Sbjct: 229 YTIGQRRGLGINLSKPVFITEIKAQTNDIVLGEFSELFIDKVEL--INSKFSVEYEK--L 284 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + + + R S + ++ + +Y + + A GQ VF+ + V+GGG Sbjct: 285 ENLELLARPRFSSTGFYGKLIKDKNKIYFKYNEENAHNAKGQHIVFFY----DGFVVGGG 340 Query: 382 II 383 I Sbjct: 341 EI 342 >gi|332173678|gb|AEE22932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 377 Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 134/392 (34%), Positives = 208/392 (53%), Gaps = 33/392 (8%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 L++ +L N + +V+V MSGGVDSSV A +L + GY V G+ ++ + + C Sbjct: 7 LSAAELASNSQK-KVIVGMSGGVDSSVSAYILLQQGYQVEGLFMKNWEEDDNDEY---CA 62 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 A +D+ DA+ V D + + + ++ + + V F Y +G TP P + CN+ +KF Sbjct: 63 AAEDLKDAQAVADKLGIELHQINFAAEYWDNVFEYFLEEYKSGRTPNPDIMCNKEIKFKA 122 Query: 129 LLS-VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 L +L AD +ATGHY+R R DG + M R MD +DQSYFL+ +Q + Sbjct: 123 FLEFAAEELEADYIATGHYVRRREV---DGHWQ--MLRGMDDNKDQSYFLYTLGEQHVGQ 177 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 FP+GD++K VR++A+E GL DK DS ICF+ + K+ D + + A G I Sbjct: 178 TLFPIGDIEKPQVREIAQEQGLITHDKKDSTGICFIGERKFTDFLSQYLP--AQPGVIET 235 Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGE----PLFVVYLDKNSSRVIVG-----PRES 297 GQ +G+H G++ +T+GQR+GL + M E P +VV D + +IVG PR Sbjct: 236 PEGQEIGQHQGLMYHTLGQRKGLMIGGMKEFGDDPWYVVDKDMARNVLIVGQGADHPR-- 293 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSE 356 L + +++W+ D + + KC VK R Q+ +P + + DG V F++ + Sbjct: 294 LFSKGLVANQLHWV-DRVGPTCAI---KCSVKTRYRQEDIPCSLTLDSDGSARVIFDQPQ 349 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIISGSKR 388 V GQ+ VFY ++ LGGGII R Sbjct: 350 KAVTPGQSAVFYLNEV----CLGGGIIESYIR 377 >gi|221633062|ref|YP_002522287.1| tRNA methyl transferase [Thermomicrobium roseum DSM 5159] gi|221155991|gb|ACM05118.1| tRNA methyl transferase [Thermomicrobium roseum DSM 5159] Length = 370 Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 136/384 (35%), Positives = 195/384 (50%), Gaps = 29/384 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+VA+SGGVDS+V A LLK+ G++ +G+ L+L+++ A G CC DAR V Sbjct: 11 RVLVALSGGVDSAVTAYLLKQAGWEPVGIHLRLFDA--APGLDGVCCGDVAAADARAVAA 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +V D F V+ P YA TP PCV CN V+ LL + LG + Sbjct: 69 QIGIPFFVRDLRPEFEQEVVAPTVEEYARARTPNPCVFCNHRVRIPALLELAEALGIRFV 128 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R V G R R D +RDQSY L+ T QL L FPLG+ K +VR Sbjct: 129 ATGHYVRK---VATPGGWRLAEAR--DAQRDQSYVLYRLTADQLERLLFPLGEYDKPTVR 183 Query: 202 DLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 +A+E GL +A K S D+CF + G +V + + G ++ +++G H GI Sbjct: 184 AIAQEAGLFVARKPSSVDLCFAKTYGGIGRLVSQRRPETSRPGPLLDERDEVVGTHPGIA 243 Query: 261 NYTIGQRRGLGVAMGEP--LFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 TIGQRRGL A P +V +D ++ V V PRE RI R + L D ++ D Sbjct: 244 FVTIGQRRGLEWARPTPERRYVAEIDPATAVVRVAPRE-----RILTRAVR-LADPVWHD 297 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 V ++R +P + +G +V F++ +A GQ+ V Y D RV+ Sbjct: 298 PV---LTADARLRYQGPRIPARI----EGDWVIFDEPAPPLAPGQSVVLYVGD----RVV 346 Query: 379 GGGIISGSKRSDAVEESLLSVIGD 402 GGGI R++ +ES + + Sbjct: 347 GGGIAEEVVRTE--QESPIPALAQ 368 >gi|205822040|sp|A9MG80|MNMA_SALAR RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 368 Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 130/383 (33%), Positives = 206/383 (53%), Gaps = 34/383 (8%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + ++PK +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ Sbjct: 1 MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADL 55 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 56 ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + LGAD +ATGHY+R V +GK R + R +D +DQSYFL+ +Q+ FP+ Sbjct: 116 AEDLGADYIATGHYVRR---VDINGKSR--LLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR +A ++GL A K DS ICF+ + K+ D + R A G I+ ++G Sbjct: 171 GELEKPQVRKIAEDLGLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDE 228 Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHR 302 +G H G++ +T+GQR+GLG+ +P +VV D ++ +IV PR L Sbjct: 229 IGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGHEHPR--LMSSG 286 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361 + ++++W+ F + C VK R Q +P + +DD + V F++ V Sbjct: 287 LIAQQLHWVDREPFTGTL----SCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTP 342 Query: 362 GQACVFYTSDSNEARVLGGGIIS 384 GQ+ VFY+ + LGGGII Sbjct: 343 GQSAVFYSGEV----CLGGGIIE 361 >gi|227893351|ref|ZP_04011156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus ultunensis DSM 16047] gi|227864766|gb|EEJ72187.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus ultunensis DSM 16047] Length = 375 Score = 192 bits (488), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 130/377 (34%), Positives = 191/377 (50%), Gaps = 23/377 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A +D D ++V D Sbjct: 8 RVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TDDAGVCTATEDYEDVKKVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y G TP P V CN +KF L L AD + Sbjct: 65 KIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLDFAMDLDADYI 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 A GHY ++ V D +M RP D +DQ+YFL +Q Q+ + FPL ++ K VR Sbjct: 125 AMGHYAKT---VKDKNGIVHMM-RPKDGNKDQTYFLSQLSQDQIQKVIFPLANLTKPQVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A GL A K DS ICF+ + + + A G +V +G+++G H G++ Sbjct: 181 EIALANGLATAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGKVVGEHAGLMY 238 Query: 262 YTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 YTIGQR+GLG+ +P FVV D + +IV + + +Y + F Sbjct: 239 YTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIV--EQGYDSPLLYASHLKASDMSFFT 296 Query: 318 DAVVDGFK--CFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F+ C K R Q + V V+ + D+ V F++ V GQA V Y N Sbjct: 297 GQPDHDFEMHCSAKFRYRQCDIGVTVKYHAADNTADVYFDEPARAVTPGQALVLY----N 352 Query: 374 EARVLGGGIISGSKRSD 390 LGGG I + + D Sbjct: 353 GEECLGGGNIDAAYQED 369 >gi|240948512|ref|ZP_04752885.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus minor NM305] gi|240297020|gb|EER47591.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus minor NM305] Length = 389 Score = 192 bits (488), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 126/372 (33%), Positives = 208/372 (55%), Gaps = 28/372 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++ MSGGVDSSV A +L++ GY V G+ ++ + + C A D+ DA+ V D Sbjct: 31 KVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---CTAAADLADAQAVAD 87 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F S Y AG TP P + CN+ +KF L + LGAD Sbjct: 88 KLGMKLHKINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 147 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R GDD + + R +D +DQSYFL+A +++Q+ FP+G+++K V Sbjct: 148 IATGHYVRRS---GDDENAQ--LLRGLDTNKDQSYFLYALSKKQVGQSLFPVGEIEKPIV 202 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ D + R A G+I ++G+++GRH+G++ Sbjct: 203 RKIAEDLGLATAKKKDSTGICFIGERKFKDFLARFLP--AQPGEIRTVDGKVVGRHDGLM 260 Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +T+GQR+GLG+ EP +VV D ++ ++V +L + ++NW+ Sbjct: 261 YHTLGQRKGLGIGGVKGLSEEPFYVVEKDLINNVLVVAQGHDNSALLSTGLIASQLNWVD 320 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 + + +C VK R Q+ +P +Q DD + V F++ ++ V GQ+ VFY + Sbjct: 321 ----LQPIRENLRCTVKTRYRQEDIPCEIQPIDDNTIRVMFDEPQIAVTPGQSAVFYLDE 376 Query: 372 SNEARVLGGGII 383 LGGGII Sbjct: 377 V----CLGGGII 384 >gi|148543839|ref|YP_001271209.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus reuteri DSM 20016] gi|184153240|ref|YP_001841581.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus reuteri JCM 1112] gi|227364743|ref|ZP_03848792.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus reuteri MM2-3] gi|325682630|ref|ZP_08162147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus reuteri MM4-1A] gi|166991123|sp|A5VJ48|MNMA_LACRD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|229486414|sp|B2G6L9|MNMA_LACRJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|148530873|gb|ABQ82872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus reuteri DSM 20016] gi|183224584|dbj|BAG25101.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Lactobacillus reuteri JCM 1112] gi|227070202|gb|EEI08576.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus reuteri MM2-3] gi|324978469|gb|EGC15419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus reuteri MM4-1A] Length = 377 Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 140/383 (36%), Positives = 201/383 (52%), Gaps = 33/383 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLKR GYDV+GV ++ ++ + G C A +D D +V Sbjct: 8 RVVVGMSGGVDSSVTALLLKRQGYDVVGVFMKNWDD---TDENGVCTATEDYKDVAKVAS 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y G TP P V CN+ +KF + QLGAD + Sbjct: 65 KIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + D+ R +M R D +DQ+YFL +QL + FPL K +R Sbjct: 125 ATGHYADVKR---DENGRMHLM-RAKDQHKDQTYFLSQLDYKQLDKVMFPLAGYTKPEIR 180 Query: 202 DLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 +A E GL ADK DS ICF+ + G + + + + A G++ L+G+++G+H G++ Sbjct: 181 KIAEEAGLATADKKDSVGICFIGEDGHFREFLSQYIP--AQPGNMETLDGKVVGQHMGLM 238 Query: 261 NYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP-RESLEVHRIYLR--EINWLGD 313 YTIGQRRGLG+ EP FV+ D + + VG E+ ++ +L +I+W+ D Sbjct: 239 YYTIGQRRGLGLGGNKESNEPWFVIGKDMKKNVLYVGQGYENSHLYATHLEASDIHWVDD 298 Query: 314 GLFEDAVVD----GFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVF 367 VV F C K R Q V V V +DD V V+F+ + GQA VF Sbjct: 299 ------VVSRYGRDFHCTAKFRYRQTDVGVTVHLSDDDQMVTVEFDDPARAITPGQAVVF 352 Query: 368 YTSDSNEARVLGGGIISGSKRSD 390 Y + LG II + D Sbjct: 353 YDGE----ECLGSAIIDRAYSHD 371 >gi|325844820|ref|ZP_08168272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Turicibacter sp. HGF1] gi|325489007|gb|EGC91395.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Turicibacter sp. HGF1] Length = 377 Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 127/378 (33%), Positives = 193/378 (51%), Gaps = 28/378 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQ 71 K +V+V MSGGVDSSV A LLK GY+V GV ++ ++S + G+ C Sbjct: 5 KGKKVIVGMSGGVDSSVAAYLLKEQGYEVEGVFMRNWDSAANADVLGNPTLNDEVCPQEV 64 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D DA+ V D + + + D+ + + + V + F Y AG TP P + CN+ VKF L Sbjct: 65 DYNDAKAVADQLGIKLHRVDFVQEYWDRVFMYFLDEYRAGRTPNPDIMCNKEVKFKAFLD 124 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LG D +A GHY R V +G+ + M R +D +DQ+YFL TQ QL FP Sbjct: 125 YAMNLGCDYIAMGHYAR----VSHEGEVQ--MLRGLDNNKDQTYFLSQLTQAQLSKTLFP 178 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 +G+++K VR +A ++ L A K DS +CF+ + + ++ N A G + L G+ Sbjct: 179 VGELQKSEVRAIAEKLDLATAKKKDSTGVCFIGERNFTQFLQ--NYLPAQPGQMRTLEGE 236 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 ++G H G++ YTIGQR+GLG+ G+ FV+ + + ++VG E + + Sbjct: 237 VVGEHIGLMYYTIGQRKGLGIGGKGDAWFVIGKNLKDNVLLVGQGFDHEYVYADEALVSN 296 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACV 366 +NW+ F V ++C K R Q +PV +D+ + V + V GQA V Sbjct: 297 VNWIPSERF----VGTYRCTAKFRYRQPDIPVELTWIDDETLNVKMLEPVRAVTPGQAAV 352 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGG I Sbjct: 353 FYLDEV----CLGGGRIE 366 >gi|120603213|ref|YP_967613.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfovibrio vulgaris DP4] gi|205816916|sp|A1VFH0|MNMA_DESVV RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|120563442|gb|ABM29186.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfovibrio vulgaris DP4] Length = 346 Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 133/368 (36%), Positives = 178/368 (48%), Gaps = 26/368 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD-VYDARRV 79 M + VAMSGG DS LLK G V G+ + G D V D R + Sbjct: 1 MTIAVAMSGGTDSLFALVLLKEQGQQVCGLHARFIPP-----------TGHDPVPDIRAM 49 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + V +V D E F V+ PF Y G TP PC CN T+KF L +GA Sbjct: 50 CDRLGVDLHVVDLTEAFEEHVVRPFMEDYMVGRTPNPCARCNATMKFGLLADAAAHVGAV 109 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 LATGHY R + + ++ R +D +DQSYFL +L FPLG+ +KE+ Sbjct: 110 HLATGHYAR----LLRHPRWGTVLQRGVDPAKDQSYFLSLVPHARLEKAVFPLGNWRKEA 165 Query: 200 VR-DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +LAR + S+SQ+ICFV Y +K + G IV G+ +G H G Sbjct: 166 VRGELARR-SIVPPLPSESQEICFVPDDDYRAFLKNRRVRLPGPGPIVTTRGRKIGSHAG 224 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 + YT GQR+GLG+A EPL+VV D ++ ++VG RE+L E+N L +ED Sbjct: 225 LWQYTEGQRKGLGIAWHEPLYVVGKDMENNMLLVGGREALASPGCVAEEVNLLVP--YED 282 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + V+IR Q P+ V D +Y F + + A GQ Y E VL Sbjct: 283 WPAE---VAVRIRYRQQPLSARVTLRDGRLYARFREPQPPAARGQVLAVY---DMEHHVL 336 Query: 379 GGGIISGS 386 GGG+I G Sbjct: 337 GGGVILGP 344 >gi|50084409|ref|YP_045919.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter sp. ADP1] gi|73919892|sp|Q6FCW2|MNMA_ACIAD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|49530385|emb|CAG68097.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter sp. ADP1] Length = 377 Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 124/374 (33%), Positives = 202/374 (54%), Gaps = 23/374 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ V D Sbjct: 4 RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTALEDLADAQAVAD 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F + YAAG TP P + CN+ +KF + LGAD + Sbjct: 61 KIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFIDHAMTLGADFI 120 Query: 142 ATGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY R + + G+ + R +D +DQSYFL A +++ FP+G+++K V Sbjct: 121 ATGHYTRRGESMQNSRGESYAPLLRGVDNNKDQSYFLHAVHGREINKTLFPVGEIEKPEV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + ++ D +K+ A G IV NG+ +G H+G++ Sbjct: 181 RKIAEKLDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDNGKEVGEHHGLM 238 Query: 261 NYT-----IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312 YT GL A FV++ D ++R+++G ++ ++ ++I+W+ Sbjct: 239 YYTLGQRGGIGLGGLKGAAEGAWFVLHKDLENNRLVIGQGHEHPLMQSTTLWSQDIDWVA 298 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD---GVYVDFEKSEVGVASGQACVFYT 369 +D GF+C K R Q + R++D GV V+F++ + V GQ+ VFYT Sbjct: 299 GE--QDIPASGFRCTAKTRYRQPDQACTIYRDEDRNNGVRVEFDEPQRAVTPGQSVVFYT 356 Query: 370 SDSNEARVLGGGII 383 ++ LGGG+I Sbjct: 357 NEI----CLGGGVI 366 >gi|310767364|gb|ADP12314.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erwinia sp. Ejp617] Length = 369 Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 121/375 (32%), Positives = 202/375 (53%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ G+ V G+ ++ + + C A +D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGFQVEGLFMKNWEE---DDDEAYCTAAEDLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIYLHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + D G + R++ R +D +DQSYFL+ + + FP+G++ K V Sbjct: 124 IATGHYVRRQ----DVGGKSRLL-RGLDGNKDQSYFLYTLGHEHIAQSLFPVGELAKPEV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ + + R A G I+ ++G +G+H G++ Sbjct: 179 RRIAEQLKLVTAKKKDSTGICFIGERKFTEFLARYLP--AQPGAIISVDGVNVGQHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ A +P +VV D ++ ++V PR L + ++++W Sbjct: 237 YHTLGQRKGLGIGGRKEANEDPWYVVDKDVTNNLLVVAQGHDHPR--LMSQGLTAQQLHW 294 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYT 369 + + + +C VK R Q+ +P V D + + V F+ V GQ+ VFY Sbjct: 295 VDRSVLSAPL----RCTVKTRYRQEDIPCTVIPLDAERIEVRFDYPVAAVTPGQSAVFYL 350 Query: 370 SDSNEARVLGGGIIS 384 + LGGG+I Sbjct: 351 DEV----CLGGGVIE 361 >gi|167618733|ref|ZP_02387364.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia thailandensis Bt4] Length = 386 Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 134/398 (33%), Positives = 186/398 (46%), Gaps = 35/398 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ + + C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVIGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L LGA+ + Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + D + R G + +G+ +G H G+ Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TQPGPMKTPDGKTVGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313 YT GQR+G+G+ GEP FV D N+ V+ G L + ++W+ Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD-------FEKSEVGVASGQACV 366 + DG +C K R Q P G F++ + V GQ+ V Sbjct: 295 ----EPPADGARCGAKTRYRQADAPCAFSSAAPGEAAGGERFSLVFDEPQWAVTPGQSAV 350 Query: 367 FYTSDSNEARVLGGGII--SGSKRSDAVEESLLSVIGD 402 Y D LGGGII + + R DA S S + + Sbjct: 351 LYDGDV----CLGGGIIEAAATGRPDAAPASCESALAE 384 >gi|169632892|ref|YP_001706628.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii SDF] gi|229486328|sp|B0VUD6|MNMA_ACIBS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|169151684|emb|CAP00474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter baumannii] Length = 377 Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 123/374 (32%), Positives = 200/374 (53%), Gaps = 23/374 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ V D Sbjct: 4 RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTEY---CTAMEDLADAQAVAD 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F + YAAG TP P + CN+ +KF L LGAD + Sbjct: 61 KIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGADFI 120 Query: 142 ATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY R+ G+ + R +D +DQ+YFL A +++ FP+G+++K V Sbjct: 121 ATGHYARRAETAYNSKGEAYAPLLRGLDNNKDQTYFLHAVHGREINKTLFPVGEIEKPEV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+ L A K DS ICF+ + ++ D +K+ A G IV NG+ +G H+G++ Sbjct: 181 RRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDNGKEVGEHHGLM 238 Query: 261 NYTI-----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YT+ G+ A FV++ D ++R++VG ++ +++ I+W+ Sbjct: 239 YYTLGQRGGIGLGGMKGASEGAWFVLHKDVTNNRLVVGQGHDHPLMQSTQLWSESIDWVA 298 Query: 313 DGLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYT 369 ++ +G +C K R Q VF+ N + GV V+F++ + V GQ+ VFY+ Sbjct: 299 GE--QNIPAEGLRCTAKTRYRQPDQACTVFIDENSEHGVRVEFDEPQRAVTPGQSVVFYS 356 Query: 370 SDSNEARVLGGGII 383 + LGGG+I Sbjct: 357 DEV----CLGGGVI 366 >gi|307553134|gb|ADN45909.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli ABU 83972] Length = 368 Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 130/373 (34%), Positives = 203/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ + R A G I+ ++G +G H G++ Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFRKFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ EP +VV D +N+ ++ E + + L ++++W+ Sbjct: 237 YHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVD 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSD 371 F + +C VK R Q +P V+ D D + V F++ V GQ+ VFY Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDADRIEVIFDEPVAAVTPGQSAVFY--- 349 Query: 372 SNEARVLGGGIIS 384 N LGGGII Sbjct: 350 -NGEVCLGGGIIE 361 >gi|256832943|ref|YP_003161670.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Jonesia denitrificans DSM 20603] gi|256686474|gb|ACV09367.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Jonesia denitrificans DSM 20603] Length = 423 Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 142/417 (34%), Positives = 202/417 (48%), Gaps = 57/417 (13%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AAL G+DV+GV + L +R R GS CC+ +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAALAVEAGHDVVGVHMALSRNRN-QFRSGSRGCCSIEDASDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + +YV+D E+F + V+ F S Y AG TP PCV CN +KF LL LG Sbjct: 60 AADILGIPYYVWDLSEKFEDTVVADFISEYEAGRTPNPCVRCNEHIKFEALLDKAMALGF 119 Query: 139 DVLATGHYI----RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 D +ATGHY R V R + R + +DQSY L +L + FPLG Sbjct: 120 DAVATGHYAQIIDRDTTDVHGQPTVIRELHRSPNDAKDQSYVLAVMGPDRLKNAIFPLGG 179 Query: 195 -MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHLNGQI 252 K+ VR A GL +++K DS DICFV G ++ R+ + G+++ +G + Sbjct: 180 YASKDEVRAEAERRGLSVSNKPDSYDICFVADGDTKGFLRDRLG---SRPGEVLDTDGNV 236 Query: 253 LGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G H+G YT+GQR+GL + G+P +V+ + + VIVGP E L V+RI + Sbjct: 237 VGTHDGAYAYTVGQRKGLALGRPAEDGKPRYVLGVSTRDNTVIVGPSELLSVNRIVGDKA 296 Query: 309 NWLGDGLFEDAVV-----DGFKCFVKIRSSQDPVP------------------------- 338 W + DA + D F ++R+ +P Sbjct: 297 VWFATDILTDASLTTEGSDWFAIEGQVRAHGAALPGRARIVPLDRARDLMPAGREELAAE 356 Query: 339 -VFVQRNDDG------VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388 V+ D G V V+ + GVA+GQ+ V Y RV+G + S R Sbjct: 357 CTRVEGADPGHDHTALVEVELQSPLRGVAAGQSIVLYRG----TRVIGQATVVASDR 409 >gi|76810425|ref|YP_334767.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia pseudomallei 1710b] gi|126451955|ref|YP_001067626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 1106a] gi|242317503|ref|ZP_04816519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 1106b] gi|254191526|ref|ZP_04898029.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei Pasteur 52237] gi|254194966|ref|ZP_04901396.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei S13] gi|254261623|ref|ZP_04952677.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 1710a] gi|254299216|ref|ZP_04966666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 406e] gi|123598034|sp|Q3JNT6|MNMA_BURP1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205811476|sp|A3NZ55|MNMA_BURP0 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|76579878|gb|ABA49353.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 1710b] gi|126225597|gb|ABN89137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 1106a] gi|157808903|gb|EDO86073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 406e] gi|157939197|gb|EDO94867.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei Pasteur 52237] gi|169651715|gb|EDS84408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei S13] gi|242140742|gb|EES27144.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 1106b] gi|254220312|gb|EET09696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 1710a] Length = 383 Score = 192 bits (487), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 129/377 (34%), Positives = 181/377 (48%), Gaps = 30/377 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L LGA + Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + D + R G + +G+ +G+H G+ Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGKHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313 YT GQR+G+G+ GEP FV D N+ V+ G L + ++W+ Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + DG +C K R Q P Q D+ + F++ + V GQ+ V Y Sbjct: 295 ----EPPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWAVTPGQSAVLYD 350 Query: 370 SDSNEARVLGGGIISGS 386 D LGGGII + Sbjct: 351 GDV----CLGGGIIESA 363 >gi|329963139|ref|ZP_08300919.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides fluxus YIT 12057] gi|328529180|gb|EGF56110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides fluxus YIT 12057] Length = 359 Score = 192 bits (487), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 127/383 (33%), Positives = 195/383 (50%), Gaps = 47/383 (12%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N + RV+V MSGG+DS+ +LK GY+++G+T+ ++ + DA Sbjct: 2 NKSEKRVLVGMSGGIDSTATCLMLKEQGYEIVGLTMWVWGDKPV--------------DA 47 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + +++ + HY+ D + FR ++ F Y G TP PCV CN KF L+ +L Sbjct: 48 CELAESMGIGHYIADERDAFRRIIVQDFIDEYRQGRTPNPCVMCNPMFKFRILMEWADKL 107 Query: 137 GADVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 G +ATGHY R ++Y+ GDD K +DQSYFL+ Q L Sbjct: 108 GCKYIATGHYTRLEEIDGKVYIIAGDDDK------------KDQSYFLWRLGQDVLKRCI 155 Query: 190 FPLGDMKKESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDI 245 FPLG K VR R+ G + A++ +S ++CF+ +G Y D +K + I E G Sbjct: 156 FPLGTYTKPQVRGYLRDKGYAVKAEEGESMEVCFI-KGDYRDFLKEHSPEIDREIGPGWF 214 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 V+ G LG H G YTIGQR+GL +A+G+P +V+ ++ + V++G E L+ + L Sbjct: 215 VNSEGVKLGEHKGYPYYTIGQRKGLEIALGKPAYVLKINPLKNTVMLGDAEQLKTRHM-L 273 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364 E L D E V + + V+IR P+P V+R +DG + V F+ +A GQ+ Sbjct: 274 VEQEKLTD---EREVFESKELTVRIRYRSKPIPCTVRRLEDGRLLVCFQVEASAIAPGQS 330 Query: 365 CVFYTSDSNEARVLGGGIISGSK 387 VFY RV+GG I+ + Sbjct: 331 AVFYIG----RRVVGGSFIASQR 349 >gi|293374251|ref|ZP_06620579.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Turicibacter sanguinis PC909] gi|292647084|gb|EFF65066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Turicibacter sanguinis PC909] Length = 377 Score = 192 bits (487), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 127/378 (33%), Positives = 193/378 (51%), Gaps = 28/378 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQ 71 K +V+V MSGGVDSSV A LLK GY+V GV ++ ++S + G+ C Sbjct: 5 KGKKVIVGMSGGVDSSVAAYLLKEQGYEVEGVFMRNWDSAANADVLGNPTLNDEVCPQEV 64 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D DA+ V D + + + D+ + + + V + F Y AG TP P + CN+ VKF L Sbjct: 65 DYNDAKTVADQLGIKLHRVDFVQEYWDRVFMYFLDEYRAGRTPNPDIMCNKEVKFKAFLD 124 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LG D +A GHY R V +G+ + M R +D +DQ+YFL TQ QL FP Sbjct: 125 YAMNLGCDYIAMGHYAR----VSHEGEVQ--MLRGLDNNKDQTYFLSQLTQAQLSKTLFP 178 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 +G+++K VR +A ++ L A K DS +CF+ + + ++ N A G + L G+ Sbjct: 179 VGELQKSEVRAIAAKLDLATAKKKDSTGVCFIGERNFTQFLQ--NYLPAQPGQMRTLEGE 236 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 ++G H G++ YTIGQR+GLG+ G+ FV+ + + ++VG E + + Sbjct: 237 VVGEHIGLMYYTIGQRKGLGIGGKGDAWFVIGKNLKDNVLLVGQGFDHEYVYADEALVSN 296 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACV 366 +NW+ F V ++C K R Q +PV +D+ + V + V GQA V Sbjct: 297 VNWIPSERF----VGTYRCTAKFRYRQPDIPVELTWIDDETLNVKMLEPVRAVTPGQAAV 352 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGG I Sbjct: 353 FYLDEV----CLGGGRIE 366 >gi|255011782|ref|ZP_05283908.1| putative tRNA methyltransferase [Bacteroides fragilis 3_1_12] Length = 364 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 127/387 (32%), Positives = 198/387 (51%), Gaps = 49/387 (12%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ + RV+V MSGG+DS+ +L+ GY+++GVT++++ G + Sbjct: 1 MNMKESNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEP 46 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DAR + + + HYV D F++ ++ F Y G TP PCV CN KF L+ Sbjct: 47 QDARELAVRMGIEHYVADERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWA 106 Query: 134 RQLGADVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 +LG D +ATGHY R +Y+ GDD K +DQSYFL+ Q L Sbjct: 107 DKLGCDWIATGHYSRLEERNGYIYIVAGDDEK------------KDQSYFLWRLGQDVLR 154 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVK----RINAGIAL 241 FPLG+ K++VRD RE G + K +S ++CF+ +G Y D ++ ++A I Sbjct: 155 RCIFPLGNYTKQTVRDYLREKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDAEIG- 212 Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH 301 G V G LG+H G YTIGQR+GL +A+G+P +V+ ++ + V++G E L+ Sbjct: 213 PGWFVSSEGVKLGQHRGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKAG 272 Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360 + + N + ED + + V+IR P+P V+R +DG + V F +A Sbjct: 273 YMVAEQDNIVD----EDELFSCPELAVRIRYRSRPIPCRVKRLEDGRLLVRFLAEASAIA 328 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSK 387 GQ+ VFY RV+GG I+ + Sbjct: 329 PGQSAVFYDG----RRVIGGAFIASQR 351 >gi|221202286|ref|ZP_03575320.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia multivorans CGD2M] gi|221209100|ref|ZP_03582094.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia multivorans CGD2] gi|221171004|gb|EEE03457.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia multivorans CGD2] gi|221177860|gb|EEE10273.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia multivorans CGD2M] Length = 381 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 181/371 (48%), Gaps = 27/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L LGA+ + Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDYAMSLGAETI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + D + R G + +G+++G H G+ Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKLVGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGD 313 YT GQR+G+G+ GEP FV D N+ V+ G + R + ++W+ Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIPSNTLYVVQGHDHPWLLSRELVAGNVSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + +GF C K R Q D F + + + F ++ V GQ+ V Y + Sbjct: 295 ----EPPAEGFACGAKTRYRQADAACTFARAGGERFSLAFADAQWAVTPGQSAVLYDGEV 350 Query: 373 NEARVLGGGII 383 LGGGII Sbjct: 351 ----CLGGGII 357 >gi|149926700|ref|ZP_01914960.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Limnobacter sp. MED105] gi|149824629|gb|EDM83845.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Limnobacter sp. MED105] Length = 358 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 127/370 (34%), Positives = 190/370 (51%), Gaps = 26/370 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VV+ MSGGVDSSV A LLK+ GY+VIG+ ++ + S+ C + QD DA V D Sbjct: 5 VVIGMSGGVDSSVSAWLLKQQGYNVIGLFMKNWEDDDDSEY---CSSRQDWLDAASVADV 61 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + V ++ +++ V F S Y+AG TP P + CN +KF L LGAD +A Sbjct: 62 VGVDIEAVNFASEYKDRVFSVFLSEYSAGRTPNPDILCNSEIKFKAFLDHAYSLGADYIA 121 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R R G+ + + +D +DQSYFL Q QL FPLG+++K VR Sbjct: 122 TGHYARVRELNGE-----FQLLKAVDHSKDQSYFLHRLNQAQLSKTLFPLGEIQKTEVRK 176 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A E+GL A K DS ICF+ + + + + R G I++ GQ +G H G+ Y Sbjct: 177 IALELGLANATKKDSTGICFIGERPFREFLNRYLP--TAPGPILNDEGQQIGEHVGLSFY 234 Query: 263 TIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLGDG 314 T+GQR+G+G+ GEP FV D +N++ +V + +H+ L + +++ Sbjct: 235 TLGQRKGIGIGGQKEGNGEPWFVARKDLQNNTLYVVQGHDHPWLHQKVLVAEQAHYISG- 293 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 A D K R Q+ + + G ++F +S+ V GQ+ V Y D Sbjct: 294 ---HAPSDPQHMACKARYRQEDSSCDFKLTEQGFELNFAESQFAVTPGQSAVLYRGDV-- 348 Query: 375 ARVLGGGIIS 384 LGGG+I+ Sbjct: 349 --CLGGGVIA 356 >gi|260582389|ref|ZP_05850181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae NT127] gi|260094540|gb|EEW78436.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae NT127] Length = 418 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 126/375 (33%), Positives = 208/375 (55%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+ MSGGVDSSV A +L++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 61 KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 117 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 118 KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 177 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 178 IATGHYVRR---AGDNENAK--LLRGLDPNKDQSYFLYTLSHKQVGQSLFPVGEIEKPIV 232 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ D + R A GDI ++G+I+GRH+G++ Sbjct: 233 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGDIRTVDGEIIGRHDGLM 290 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ A E +VV D ++ +IV PR L + +++W Sbjct: 291 YHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQLHW 348 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + + + + +C VK R Q +P ++ +D+ + V F++ + V GQ+ VFY Sbjct: 349 VD----REPIRELLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 404 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII+ Sbjct: 405 CEV----CLGGGIIA 415 >gi|325577519|ref|ZP_08147881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus parainfluenzae ATCC 33392] gi|325160623|gb|EGC72747.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus parainfluenzae ATCC 33392] Length = 384 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 127/375 (33%), Positives = 206/375 (54%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+ MSGGVDSSV A +L++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 26 KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 82 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGA Sbjct: 83 KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGAHY 142 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R GDD + + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 143 IATGHYVRR---AGDDENAK--LLRGLDANKDQSYFLYTLSHKQVGQSLFPVGEIEKPIV 197 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+GL A K DS ICF+ + K+ D + R A GDI ++G+I+GRH+G++ Sbjct: 198 RAIAEELGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGDIRTVDGEIIGRHDGLM 255 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ A E +VV D ++ +IV PR L + +++W Sbjct: 256 YHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQLHW 313 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + + + + +C VK R Q +P ++ +D+ + V F++ + V GQ+ VFY Sbjct: 314 VD----REPIRELVRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 369 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 370 GEI----CLGGGIIE 380 >gi|254881202|ref|ZP_05253912.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 4_3_47FAA] gi|319640212|ref|ZP_07994938.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 3_1_40A] gi|254833995|gb|EET14304.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 4_3_47FAA] gi|317388199|gb|EFV69052.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 3_1_40A] Length = 351 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 119/363 (32%), Positives = 183/363 (50%), Gaps = 22/363 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++ MSGG DSSV A LL+ GY+V G+T + Y + + + DAR +C+ Sbjct: 9 KVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFYEKENDT---------EYLEDARALCE 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +N+ H +D + FR +I F + Y AG TP+PC CN +K+ L ++ ++G Sbjct: 60 RLNIPHLTYDVRDTFRKTIIDYFINEYMAGHTPVPCTLCNNYLKWPLLKKISDEMGIYHF 119 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R R G + D ++DQS+FL+ Q+ L + P+G++ K VR Sbjct: 120 ATGHYVRRRFINGCYH-----ITTGADSDKDQSFFLWGLPQEILQRMLLPMGNLTKARVR 174 Query: 202 DLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 ++A E G L A K DS +CF + K + G L G G + RH G Sbjct: 175 EIAAERGFLKAAHKRDSLGVCFCPMDYRTFLHKELPEGSILPGKFFDEMGNFIARHKGYP 234 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQRRGLG+ + +FV + ++VI+ ++LE + L+E + L + Sbjct: 235 FYTIGQRRGLGIDLNRAVFVKEIIPAENKVILSDLKALEKTEMRLKEWHITNPALLLNK- 293 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 D ++ R + V +Q D+ ++V + +A GQA FY D VLGG Sbjct: 294 -DDIIVKIRYRKQANRCTVTLQ-PDNTLHVQLHEPLTAIAPGQAAAFYRDDV----VLGG 347 Query: 381 GII 383 GII Sbjct: 348 GII 350 >gi|209695634|ref|YP_002263563.1| tRNA-specific 2-thiouridylase MnmA [Aliivibrio salmonicida LFI1238] gi|208009586|emb|CAQ79882.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aliivibrio salmonicida LFI1238] Length = 374 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 118/377 (31%), Positives = 195/377 (51%), Gaps = 27/377 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + + C A +D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + L AD Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADF 124 Query: 141 LATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +A GHY+R +D + M R +D +DQSYFL+ + +Q+ FP+GD++K Sbjct: 125 IAMGHYVRRTFPTAEDIANGAKPQMLRGLDSNKDQSYFLYTLSSEQVARSLFPVGDLEKP 184 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A+E L A K DS ICF+ + K+ + + + A G+I G+++G+H G Sbjct: 185 EVRRIAQEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGNIETPEGKVIGQHQG 242 Query: 259 IINYTIGQRRGLGVAMG-------EPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREI 308 ++ +T+GQR+GL + +P FV D + +I L+ + ++ Sbjct: 243 LMYHTLGQRKGLHIGGSKGGGGNEDPWFVGEKDLKRNVLIAVQGHDHPLLKSQGLLASQL 302 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVF 367 +W+ A+ C VK R Q +P + +D+ + V F + ++ V GQ+ VF Sbjct: 303 DWVD----RTAIKAPLSCTVKTRYRQTDIPCTIIPIDDENIKVIFNEPQIAVTPGQSAVF 358 Query: 368 YTSDSNEARVLGGGIIS 384 Y+ + LGGGII Sbjct: 359 YSGEI----CLGGGIIE 371 >gi|86147101|ref|ZP_01065418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio sp. MED222] gi|218710012|ref|YP_002417633.1| tRNA-specific 2-thiouridylase MnmA [Vibrio splendidus LGP32] gi|85835166|gb|EAQ53307.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio sp. MED222] gi|218323031|emb|CAV19208.1| Probable tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Vibrio splendidus LGP32] Length = 378 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 199/386 (51%), Gaps = 27/386 (6%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72 D+ + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + + C A +D Sbjct: 3 DISSGNSEKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNW---EEDDNEEYCTAAED 59 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 + DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 LADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEF 119 Query: 133 TRQ-LGADVLATGHYIRSRLYVGD--DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 + L AD +A GHY+R + D + M R +D +DQSYFL+ + Q+ Sbjct: 120 ADEVLDADYIAMGHYVRRTFPTQEELDAGAKPEMLRGLDGNKDQSYFLYTLSSDQVARSL 179 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 FP+G+++K VR +A E L A K DS ICF+ + K+ + + + A G+I Sbjct: 180 FPVGELEKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGNIETPE 237 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMG-------EPLFVVYLD-KNSSRVIVGPRES--LE 299 GQ++G+H G++ +T+GQR+GL + EP FV D K + + V ++ L+ Sbjct: 238 GQVIGQHQGLMYHTLGQRKGLHIGGTKGGGGNEEPWFVGEKDLKRNVLIAVQGKDHPLLK 297 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVG 358 + +++W+ + + C VK R Q +P + +D+ + V F++ ++ Sbjct: 298 SEGLIASQLHWVN----RTPITEVMTCTVKTRYRQTDIPCTIIPIDDENIKVIFDEPQIA 353 Query: 359 VASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGGII Sbjct: 354 VTPGQSAVFYLDNV----CLGGGIIE 375 >gi|309972705|gb|ADO95906.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Haemophilus influenzae R2846] Length = 413 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 125/375 (33%), Positives = 207/375 (55%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+ MSGGVDSSV A +L++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 56 KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 112 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 113 KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 172 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 173 IATGHYVRR---AGDNENAK--LLRGLDTNKDQSYFLYTLSHKQVGQSLFPVGEIEKPIV 227 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ D + R A G+I +N +I+GRH+G++ Sbjct: 228 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVNDEIIGRHDGLM 285 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ A E +VV D ++ +IV PR L + +++W Sbjct: 286 YHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQLHW 343 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + + + + +C VK R Q +P ++ +D+ + V F++ + V GQ+ VFY Sbjct: 344 VD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 399 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII+ Sbjct: 400 GEV----CLGGGIIA 410 >gi|296329079|ref|ZP_06871584.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296153798|gb|EFG94611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 343 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 114/362 (31%), Positives = 189/362 (52%), Gaps = 22/362 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV+ MSGGVDSSV A LLK GY+VIGVTL + +D+ DA++VCD Sbjct: 3 KVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENL----------KDIEDAKKVCD 52 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H V + + F N VI F Y++G+TP PCV C+ +KF L + + A+ + Sbjct: 53 KLGIIHEVVNIRKDFENIVIKYFLDGYSSGKTPSPCVICDDEIKFKILFDIADKYKAEYV 112 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + + ++ + +DQSY L+ + +L L FPL K+ +R Sbjct: 113 ATGHYTSVEY---SEVFSKYLLKSVHSIIKDQSYMLYRISPDKLERLIFPLKPYSKQGIR 169 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL++ DK DSQ +CF ++G Y + +K + G+ V +G ILG+H G Sbjct: 170 EIALKIGLEVHDKKDSQGVCFAKEG-YKEFLKENLKDEIVRGNYVDKDGNILGQHEGYQL 228 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQRRGLG+ +P+F+ + ++ +++G L ++ L + E + Sbjct: 229 YTIGQRRGLGINFSKPVFITEIKAQTNEIVLGEFSELFTDKVELINCKF----SVEYKKI 284 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + + + R S + ++ + +Y + + + GQ VF+ + V+GGG Sbjct: 285 EKLELLARPRFSSTGFYGKLMKDKEKIYFKYNEENAHNSKGQHIVFFY----DGFVVGGG 340 Query: 382 II 383 I Sbjct: 341 EI 342 >gi|83719254|ref|YP_441804.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia thailandensis E264] gi|257137971|ref|ZP_05586233.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia thailandensis E264] gi|123537507|sp|Q2SZ45|MNMA_BURTA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|83653079|gb|ABC37142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia thailandensis E264] Length = 386 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 134/398 (33%), Positives = 186/398 (46%), Gaps = 35/398 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ + + C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVIGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L LGA+ + Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + D + R G + +G+ +G H G+ Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TQPGPMKTPDGKTVGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313 YT GQR+G+G+ GEP FV D N+ V+ G L + ++W+ Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD-------FEKSEVGVASGQACV 366 + DG +C K R Q P G F++ + V GQ+ V Sbjct: 295 ----EPPSDGARCGAKTRYRQADAPCAFSSAAPGEAAGGERFSLVFDEPQWAVTPGQSAV 350 Query: 367 FYTSDSNEARVLGGGII--SGSKRSDAVEESLLSVIGD 402 Y D LGGGII + + R DA S S + + Sbjct: 351 LYDGDV----CLGGGIIEAAATGRPDAAPASCESALAE 384 >gi|313673847|ref|YP_004051958.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Calditerrivibrio nitroreducens DSM 19672] gi|312940603|gb|ADR19795.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Calditerrivibrio nitroreducens DSM 19672] Length = 343 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 126/366 (34%), Positives = 191/366 (52%), Gaps = 29/366 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVVAMSGGVDSSV A +LK+ GYDV+GVT++++ +++ + DA V Sbjct: 3 RVVVAMSGGVDSSVTAYILKKMGYDVVGVTIKMFENQEKYLK-----------DAEAVAK 51 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ + D F+ VI F +SY G TP PC CNR KF L + + GAD + Sbjct: 52 KLDIKWEMIDKTIEFQETVISYFINSYRKGLTPNPCAYCNRNAKFFFLYNEMLKYGADHI 111 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY V DG + + + + ++DQSY+L L L FPLG M K VR Sbjct: 112 ATGHYADI---VEVDG--HKYIKKSTNTKKDQSYYLALIRDDLLDKLLFPLGMMDKSEVR 166 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKR-INAGIALEGDIVHLNGQILGRHNGII 260 +A +GL++A+K DSQ++CF++ G Y D +K+ I+ +G ++ N +I+ +H GI Sbjct: 167 KIASSIGLEVAEKKDSQEVCFLEGGDYRDYLKKMIDPNKIKKGYFIYNNERIM-KHEGIE 225 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YT+GQRRGLG+ +PL+V ++D + + + + L NW G + Sbjct: 226 FYTVGQRRGLGIGYHKPLYVQHIDPVTFDIHLTDENRSGYRGVRLNNCNWFG------SP 279 Query: 321 VDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 F+ ++R V+ DD + F++ + A GQ Y D +LG Sbjct: 280 KKLFRAQARLRYRMKDANTLVEILPDDRADLLFDEPQPFPAPGQVAAIYNKDI----LLG 335 Query: 380 GGIISG 385 GG I G Sbjct: 336 GGFIEG 341 >gi|254302170|ref|ZP_04969528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148322362|gb|EDK87612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 343 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 117/362 (32%), Positives = 194/362 (53%), Gaps = 22/362 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV+ +SGGVDSSV A LLK GY+VIGVTL + + +D+ DA++VC+ Sbjct: 3 KVVIGISGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENS----------KDIEDAKKVCN 52 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + +SH V + + F N VI F Y+ G TP PCV C+ +KF L + + A+ + Sbjct: 53 KLGISHEVINIRKDFENTVIKYFLDGYSTGITPSPCVICDDEIKFKILFDIADKYKAEYV 112 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + + ++ + +DQSY L+ + +L L FPL K+ +R Sbjct: 113 ATGHYTSVEY---SEFFSKYLLKSVHSIIKDQSYMLYRLSPTKLERLIFPLKPYSKQKIR 169 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL++ +K DSQ +CF ++G Y + +K + G+ V +G ILG+H G Sbjct: 170 EIALKIGLEVYNKKDSQGVCFAKEG-YKEFLKENLKDEIVRGNYVDKDGNILGQHEGYQL 228 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQRRGLG+ + +P+F+ + ++ +++G E LE+ + IN+ +E + Sbjct: 229 YTIGQRRGLGINLSKPVFITEIIPQTNEIVLG--EFLELFTDKVELINFKFSVEYEK--L 284 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + + + R S + ++ D +Y + + A GQ VF+ + V+GGG Sbjct: 285 ENLELLARPRFSSTGFYGKLIKDRDKIYFKYNEENAHNAKGQHIVFFYDNF----VVGGG 340 Query: 382 II 383 I Sbjct: 341 EI 342 >gi|290581402|ref|YP_003485794.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Streptococcus mutans NN2025] gi|254998301|dbj|BAH88902.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Streptococcus mutans NN2025] Length = 373 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 135/381 (35%), Positives = 199/381 (52%), Gaps = 29/381 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R D +DQ+YFL +Q+QL + FPLG ++K VR Sbjct: 125 ATGHYAQ----VSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLQKPRVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A + GL A K DS ICF+ + + + + A +G ++ ++G+ +G HNG++ Sbjct: 181 EIAEKAGLVTAKKKDSTGICFIGEKNFKEFLSSYLP--AQKGRMMTIDGRDMGEHNGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR G+G+ P FVV D + + + VG ++L + +++ Sbjct: 239 YTIGQRGGMGIGGQKGGDNAPWFVVGKDLSQNILYVGQGFYHDALMSTSLTASQVH---- 294 Query: 314 GLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 F + D F C K R Q V V+ N D V F++ + + GQA VFY D Sbjct: 295 --FTQNMPDKFTLNCTAKFRYRQPDSKVTVKVNGDKAEVIFDEPQRAITPGQAVVFYDGD 352 Query: 372 SNEARVLGGGIISGSKRSDAV 392 LGGG+I + + + + Sbjct: 353 ----ECLGGGLIDNAYQEEKI 369 >gi|166154498|ref|YP_001654616.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydia trachomatis 434/Bu] gi|166155373|ref|YP_001653628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335758|ref|ZP_07224002.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis L2tet1] gi|205813555|sp|B0B7K3|MNMA_CHLT2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205813565|sp|B0BBR8|MNMA_CHLTB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|165930486|emb|CAP03979.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydia trachomatis 434/Bu] gi|165931361|emb|CAP06933.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 358 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 133/367 (36%), Positives = 194/367 (52%), Gaps = 27/367 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 V+VAMSGGVDSSVVA LLK+ G Y+V+G+ ++ + + + G C A +D D R+ + Sbjct: 5 VIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN---GECTATKDFRDVERIAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +Y + + ++ V F YA G TP P V CNR +KF L +L D L Sbjct: 62 QLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVLELKGDFL 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R G DG + R +D +DQSYFL T + L ++ FPLG M K VR Sbjct: 122 ATGHYCRG----GADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTEVR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHNGII 260 +A+E GL A K DS ICF+ + + +++ A GDI+ + Q++GRH G Sbjct: 175 RIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADSP--GDIIDFDTQQVVGRHEGAH 232 Query: 261 NYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYL-REINWLGDGLF 316 YTIGQRRGL + M +P +V+ ++KN ++ G L + L +E+NW Sbjct: 233 YYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYRQELLAKELNWFVP--L 290 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 ++ ++ K V+ RS + V+ D V V F+ V GQ FY D Sbjct: 291 QEPMICSAK--VRYRSPDEKCSVY-PLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI---- 343 Query: 377 VLGGGII 383 LGGG+I Sbjct: 344 CLGGGVI 350 >gi|205814741|sp|A8AHK2|MNMA_CITK8 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 368 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 132/381 (34%), Positives = 208/381 (54%), Gaps = 30/381 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + ++PK +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ Sbjct: 1 MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 56 ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + LGAD +ATGHY+R R V DGK R + R +D +DQSYFL+ +Q+ FP+ Sbjct: 116 AEDLGADYIATGHYVR-RADV--DGKSR--LLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G Sbjct: 171 GELEKPQVRKIAEDLGLITAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDE 228 Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL- 305 +G+H G++ +T+GQR+GLG+ +P +VV D +N+ V+ E + + L Sbjct: 229 IGQHQGLMYHTLGQRKGLGIGGTKEGTEDPWYVVDKDVENNILVVAQGHEHPRLMSVGLI 288 Query: 306 -REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQ 363 ++++W+ F + +C VK R Q +P V+ DD + V F++ V GQ Sbjct: 289 AQQLHWVDREPFSGTL----RCTVKTRYRQTDIPCTVKALDDERIEVIFDEPVAAVTPGQ 344 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY N LGGGII Sbjct: 345 SAVFY----NGEVCLGGGIIE 361 >gi|218128478|ref|ZP_03457282.1| hypothetical protein BACEGG_00048 [Bacteroides eggerthii DSM 20697] gi|317475697|ref|ZP_07934957.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA] gi|217989369|gb|EEC55682.1| hypothetical protein BACEGG_00048 [Bacteroides eggerthii DSM 20697] gi|316908153|gb|EFV29847.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA] Length = 362 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 125/386 (32%), Positives = 196/386 (50%), Gaps = 49/386 (12%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 D N + RV+V MSGG+DS+ +L+ GY+++G+T+ ++ G + Sbjct: 5 DMNKAEKRVLVGMSGGIDSTATCLMLREQGYEIVGLTMWVW--------------GDEPS 50 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 +AR++ ++ + HYV D + FR ++ F Y G TP PCV CN KF L Sbjct: 51 EARQLAQSMGIEHYVADERKAFREVIVRNFIDEYRQGRTPNPCVMCNPLFKFRILTEWAD 110 Query: 135 QLGADVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 +L +ATGHY R ++Y+ GDD K +DQSYFL+ Q L Sbjct: 111 RLDCRYIATGHYTRLEERNGKIYIVAGDDEK------------KDQSYFLWRLGQDVLRR 158 Query: 188 LRFPLGDMKKESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALE---G 243 FPLG K VRD R G + A++ +S ++CF+ +G Y D ++ + I E G Sbjct: 159 CLFPLGTYTKLQVRDYLRGKGYALKAEEGESMEVCFI-KGDYRDFLREYSPEIDKEVGPG 217 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 V+ G LG H G YT+GQR+GL +A+G+P +V+ ++ + V++G E L+ + Sbjct: 218 WFVNSEGVKLGEHKGFPYYTVGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKTEYM 277 Query: 304 YLREINWLGDGLFEDAVVDGFKCF-VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVAS 361 + D L ++A V G + V+IR P+ V+R +DG + V F+ +A Sbjct: 278 LAEQ-----DNLIDEAEVFGNEELTVRIRYRSKPIACSVKRLEDGRLLVHFQTEASAIAP 332 Query: 362 GQACVFYTSDSNEARVLGGGIISGSK 387 GQ+ VFY RV+GG I+ + Sbjct: 333 GQSAVFYVG----KRVVGGSFIASQR 354 >gi|167580628|ref|ZP_02373502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia thailandensis TXDOH] Length = 386 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 133/398 (33%), Positives = 186/398 (46%), Gaps = 35/398 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L LGA+ + Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + D + R G + +G+ +G H G+ Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TQPGPMKTPDGKTVGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313 YT GQR+G+G+ GEP FV D N+ V+ G L + ++W+ Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD-------FEKSEVGVASGQACV 366 + DG +C K R Q P G F++ + V GQ+ V Sbjct: 295 ----EPPADGARCGAKTRYRQADAPCAFSSAAPGEAAGGERFSLVFDEPQWAVTPGQSAV 350 Query: 367 FYTSDSNEARVLGGGII--SGSKRSDAVEESLLSVIGD 402 Y D LGGGII + + R DA S S + + Sbjct: 351 LYDGDV----CLGGGIIEAAATGRPDAAPASRESTLAE 384 >gi|187478638|ref|YP_786662.1| tRNA-specific 2-thiouridylase MnmA [Bordetella avium 197N] gi|123514648|sp|Q2KZ71|MNMA_BORA1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|115423224|emb|CAJ49755.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bordetella avium 197N] Length = 370 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 130/378 (34%), Positives = 191/378 (50%), Gaps = 28/378 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K RVVV MSGGVDSSV A LLK+ GY+V+G+ ++ + S+ C QD+ DA Sbjct: 7 KKGRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQDLLDAAS 63 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I V ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 64 VADLIGVEFEYVNFASEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 123 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R R G+R +++ + +D +DQSYFL Q QL FPLG++ K Sbjct: 124 EHIATGHYARVRAVDTARGQRFQLL-KALDASKDQSYFLHRLNQAQLSRTLFPLGELHKT 182 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E+GL A K DS ICF+ + + + + R G I+ G+ LG+H+G Sbjct: 183 EVRRIAHEIGLHNAAKKDSTGICFIGERPFREFLNRYLP--TAPGPILTPEGRRLGQHHG 240 Query: 259 IINYTIGQRRGLGV----------AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYLR- 306 + YT+GQR+GLG+ + + D KN++ +V + + LR Sbjct: 241 LAFYTLGQRKGLGIGGVKGQQREDGTADAWYSARKDLKNNALYVVQGHDHPWLLSDTLRA 300 Query: 307 -EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 ++NW+ DG K R Q P ++ ++ G + F +++ V GQ+ Sbjct: 301 QDVNWV-DG----EAPAAGAYAAKTRYRQADAPCELRADEAGFDLSFAQAQWAVTPGQSA 355 Query: 366 VFYTSDSNEARVLGGGII 383 V Y D LGGGII Sbjct: 356 VLYDGDV----CLGGGII 369 >gi|313149619|ref|ZP_07811812.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313138386|gb|EFR55746.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 362 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 126/380 (33%), Positives = 194/380 (51%), Gaps = 47/380 (12%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + RV+V MSGG+DS+ +L+ GY+++GVT++++ G + DAR + Sbjct: 5 NKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDAREL 50 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + HYV D F++ ++ F Y G TP PCV CN KF L+ +LG D Sbjct: 51 AVRMGIEHYVADERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCD 110 Query: 140 VLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 +ATGHY R +Y+ GDD K +DQSYFL+ Q L FPL Sbjct: 111 WIATGHYSRLEERNGYIYIVAGDDEK------------KDQSYFLWRLGQDVLRRCIFPL 158 Query: 193 GDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVHL 248 G+ K++VRD RE G + K +S ++CF+ +G Y D ++ + E G V Sbjct: 159 GNYTKQTVRDYLREKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDAEIGPGWFVSS 217 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 G LG+H G YTIGQR+GL +A+G+P +V+ ++ + V++G E L+ + + Sbjct: 218 EGVKLGQHRGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKAGYMVAEQD 277 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVF 367 N + ED + + V+IR P+P V+R +DG + V F +A GQ+ VF Sbjct: 278 NIVD----EDELFSCPELAVRIRYRSRPIPCRVKRLEDGRLLVRFLAEASAIAPGQSAVF 333 Query: 368 YTSDSNEARVLGGGIISGSK 387 Y RV+GG I+ + Sbjct: 334 YDG----RRVIGGAFIASQR 349 >gi|145637334|ref|ZP_01792994.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae PittHH] gi|145269426|gb|EDK09369.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae PittHH] Length = 383 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 126/375 (33%), Positives = 206/375 (54%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+ MSGGVDSSV A +L++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 26 KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 82 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 83 KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 142 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 143 IATGHYVRR---AGDNENAK--LLRGLDANKDQSYFLYTLSHKQVGQSLFPVGEIEKPIV 197 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ D + R A GDI ++G+I+GRH+G++ Sbjct: 198 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGDIRTVDGEIIGRHDGLM 255 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ E +VV D ++ +IV PR L + +++W Sbjct: 256 YHTLGQRKGLGIGGLKNTGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIAGQLHW 313 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYT 369 + + + + +C VK R Q +P ++ DD + V F++ + V GQ+ VFY Sbjct: 314 VD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDEIIRVIFDEPQSAVTPGQSAVFYL 369 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII+ Sbjct: 370 GEV----CLGGGIIA 380 >gi|21672533|ref|NP_660600.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25009493|sp|Q8K9Q8|MNMA_BUCAP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|21623156|gb|AAM67811.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 367 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 123/375 (32%), Positives = 204/375 (54%), Gaps = 28/375 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ +V++AMSGGVDSSV A LK + Y V G+ ++ + + K C A +D+ DA Sbjct: 4 KNKKVIIAMSGGVDSSVSAWFLKNENYQVEGLFMK---NWEEDDEKEYCNAAKDLSDAEE 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLG 137 VC +N+ + ++ + + V F + + G+TP P + CN+ +KF + ++L Sbjct: 61 VCKKLNIHLHKVNFSKEYWEKVFENFLNEHKKGKTPNPDILCNKEIKFKIFFNYAIQELQ 120 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 +D +ATGHY + + G + + + +DL +DQSYFL+ QL ++ FP+G +KK Sbjct: 121 SDYIATGHYAQIKKKNG-----KYFLLKAVDLNKDQSYFLYTLKGIQLKNILFPIGGLKK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR +A+++GL +A+K DS ICF+ K + + R A +GDI+ G I+G+HN Sbjct: 176 SQVRIIAKKIGLKVAEKKDSTGICFIGPKKINNFLNRYIK--AEKGDIITTEGTIVGKHN 233 Query: 258 GIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G+ YT+GQR+GLG+ + P +V+ + ++ +I+ + L + +IN Sbjct: 234 GLFCYTLGQRKGLGIGGIKGNYNIPWYVIEKNIINNTLIIAQGSCNKRLMSIGLIAEKIN 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368 W+ D D ++ F C KIR Q + ++ ND + V F+ V GQ+ VFY Sbjct: 294 WIND----DKIIFPFSCQAKIRYRQIDIFCNIKYINDFLIKVLFDSPVSSVTPGQSIVFY 349 Query: 369 TSDSNEARVLGGGII 383 +S LGGG+I Sbjct: 350 SSKI----CLGGGVI 360 >gi|194468395|ref|ZP_03074381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus reuteri 100-23] gi|194453248|gb|EDX42146.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus reuteri 100-23] Length = 377 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 139/383 (36%), Positives = 201/383 (52%), Gaps = 33/383 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLKR GYDV+GV ++ ++ + G C A +D D +V Sbjct: 8 RVVVGMSGGVDSSVTALLLKRQGYDVVGVFMKNWDD---TDENGVCTATEDYKDVAKVAS 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y G TP P V CN+ +KF + QLGAD + Sbjct: 65 KIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + D+ R +M R D +DQ+YFL +QL + FPL K +R Sbjct: 125 ATGHYADVKR---DENGRMHLM-RAKDQHKDQTYFLSQLDYKQLDKVMFPLAGYTKPEIR 180 Query: 202 DLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 +A E GL ADK DS ICF+ + G + + + + A G++ L+G+++G+H G++ Sbjct: 181 KIAEEAGLATADKKDSVGICFIGEDGHFREFLSQYIP--AQPGNMETLDGKVVGQHMGLM 238 Query: 261 NYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP-RESLEVHRIYLR--EINWLGD 313 YTIGQRRGLG+ EP FV+ D + + VG E+ ++ +L +++W+ D Sbjct: 239 YYTIGQRRGLGLGGNKESNEPWFVIGKDMKKNVLYVGQGYENSHLYATHLEASDVHWVDD 298 Query: 314 GLFEDAVVD----GFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVF 367 VV F C K R Q V V V +DD V V+F+ + GQA VF Sbjct: 299 ------VVSRYGRDFHCTAKFRYRQTDVGVTVHLSDDDQMVTVEFDDPARAITPGQAVVF 352 Query: 368 YTSDSNEARVLGGGIISGSKRSD 390 Y + LG II + D Sbjct: 353 YDGE----ECLGSAIIDRAYSHD 371 >gi|91776467|ref|YP_546223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacillus flagellatus KT] gi|123254088|sp|Q1GZF5|MNMA_METFK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|91710454|gb|ABE50382.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacillus flagellatus KT] Length = 360 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 130/386 (33%), Positives = 191/386 (49%), Gaps = 51/386 (13%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK GY+V+G+ ++ + + C A QD+ DA V D Sbjct: 4 KVIVGMSGGVDSSVAALLLKEQGYEVVGLFMKNWEDDDTDEY---CPAKQDLIDAAAVAD 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ + ++ V F Y+AG TP P + CN +KF L LG D++ Sbjct: 61 KIGIELEAVNFSKEYKERVFANFLEEYSAGRTPNPDILCNSEIKFKAFLDHAMALGGDLM 120 Query: 142 ATGHYIRSR-------LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 ATGHY + R L DDG +DQSYFL+ Q QL FPLG Sbjct: 121 ATGHYAQVREKNGLFQLMKADDGT------------KDQSYFLYRLNQAQLSKTLFPLGH 168 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 + K +RD+AR GL ++K DS ICF+ + + + + R G+I G+++G Sbjct: 169 LLKREIRDIARRAGLPTSEKKDSTGICFIGERPFQEFLSRYLP--RAPGEIQTPEGKVVG 226 Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 +H+G++ YT+GQR+GLG+ + GEP FV D + +IV ++ H L Sbjct: 227 QHHGLMYYTMGQRQGLGIGGSKDSNGEPWFVAGKDMQRNVLIV-----VQGHDHPLL--- 278 Query: 310 WLGDGLFEDAV--VDG------FKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVA 360 L DGL D + + G + K R Q P + R D G + F + + Sbjct: 279 -LNDGLIADNLHWIAGEEPKTHWVYAAKTRYRQPDAPCEIDRLDSGTAEIRFGHKQWAIT 337 Query: 361 SGQACVFYTSDSNEARVLGGGIISGS 386 GQ+ V Y S+ LGGGII+ + Sbjct: 338 PGQSVVVYESNV----CLGGGIITSA 359 >gi|15603201|ref|NP_246275.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pasteurella multocida subsp. multocida str. Pm70] gi|14195272|sp|Q9CLA3|MNMA_PASMU RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|12721705|gb|AAK03420.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 383 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 129/386 (33%), Positives = 213/386 (55%), Gaps = 29/386 (7%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 L++ L +N K +V+ MSGGVDSSV A +L++ GY V G+ ++ + + C Sbjct: 13 LSAEQLAENRKK-KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCT 68 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 A D+ DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF Sbjct: 69 AAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLQEYKAGRTPNPDILCNKEIKFKA 128 Query: 129 LLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 L + LGAD +ATGHY+R DG+ + + R +D +DQSYFL+ ++ Q+ Sbjct: 129 FLDYAAEDLGADYIATGHYVRRG---EKDGQCQ--LLRGLDNNKDQSYFLYTLSKDQVAQ 183 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 184 SLFPVGEIEKPIVRAIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQPGEIRT 241 Query: 248 LNGQILGRHNGIINYTIGQRRGLGV----AMGE-PLFVVYLDKNSSRVIVGP---RESLE 299 + G+++GRH+G++ +T+GQR+GLG+ MGE P +VV D ++ ++V +L Sbjct: 242 VEGKVVGRHDGLMYHTLGQRKGLGIGGVKGMGEDPFYVVEKDLVNNVLVVAQGHDNSALL 301 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVG 358 + +++W+ V +C VK R Q+ +P +Q ND+ + V F++ ++ Sbjct: 302 SSGLIASQLHWVDRQPIRQPV----RCTVKTRYRQEDIPCEIQPINDETIRVVFDEPQIA 357 Query: 359 VASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGG+I Sbjct: 358 VTPGQSAVFYQGEI----CLGGGVIE 379 >gi|46579220|ref|YP_010028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfovibrio vulgaris str. Hildenborough] gi|81404995|sp|Q72DX2|MNMA_DESVH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|46448633|gb|AAS95287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfovibrio vulgaris str. Hildenborough] gi|311233051|gb|ADP85905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfovibrio vulgaris RCH1] Length = 346 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 133/368 (36%), Positives = 178/368 (48%), Gaps = 26/368 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD-VYDARRV 79 M + VAMSGG DS LLK G V G+ + G D V D R + Sbjct: 1 MTIAVAMSGGTDSLFALVLLKEQGQQVCGLHARFIPP-----------TGHDPVPDIRAM 49 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + V +V D E F V+ PF Y G TP PC CN T+KF L +GA Sbjct: 50 CDRLGVDLHVVDLTEAFEEHVVRPFMEDYMVGRTPNPCARCNATMKFGLLADAAAHVGAV 109 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 LATGHY R + + ++ R +D +DQSYFL +L FPLG+ +KE+ Sbjct: 110 HLATGHYARLLRHP----RWGTVLQRGVDPAKDQSYFLSLVPHARLEKAVFPLGNWRKEA 165 Query: 200 VR-DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +LAR + S+SQ+ICFV Y +K + G IV G+ +G H G Sbjct: 166 VRGELARR-SIVPPLPSESQEICFVPDDDYRAFLKDRRVRLPGPGPIVTTRGRKIGSHAG 224 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 + YT GQR+GLG+A EPL+VV D ++ ++VG RE+L E+N L +ED Sbjct: 225 LWQYTEGQRKGLGIAWHEPLYVVGKDMENNMLLVGGREALASPGCVAEEVNLLVP--YED 282 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + V+IR Q P+ V D +Y F + + A GQ Y E VL Sbjct: 283 WPAE---VAVRIRYRQQPLSARVTLRDGRLYARFREPQPPAARGQVLAVY---DMEHHVL 336 Query: 379 GGGIISGS 386 GGG+I G Sbjct: 337 GGGVILGP 344 >gi|323524770|ref|YP_004226923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia sp. CCGE1001] gi|323381772|gb|ADX53863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia sp. CCGE1001] Length = 381 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 129/373 (34%), Positives = 179/373 (47%), Gaps = 29/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV MSGGVDSSV A LLK GYDV+G+ ++ + S+ C QD D V D Sbjct: 5 KVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L LGA+ + Sbjct: 62 LIGIDVEAVNFASEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRENNG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKTRVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A ++ L A K DS ICF+ + + D + R G + +G+++G H G+ Sbjct: 177 KIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLP--TQPGPMKTTDGKVVGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YT GQR+G+G+ GEP FV D S+ + V L HR+ +W+ Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAGKDIASNTLYVAQGHDHPWLLSHRLTAGNTSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTS 370 + +GF C K R Q D F G + F+ ++ V GQ+ V Y Sbjct: 295 ----EPPAEGFACGAKTRYRQADARCTFSAAGAGGDLFQLTFDDAQWAVTPGQSAVLYDG 350 Query: 371 DSNEARVLGGGII 383 D LGGGII Sbjct: 351 DV----CLGGGII 359 >gi|162139594|ref|YP_216172.2| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|71658017|sp|Q57QC0|MNMA_SALCH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|322714225|gb|EFZ05796.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 368 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 129/381 (33%), Positives = 208/381 (54%), Gaps = 30/381 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + ++PK +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ Sbjct: 1 MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 56 ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + LGAD +ATGHY+R R V +GK R + R +D +DQSYFL+ +Q+ FP+ Sbjct: 116 AEDLGADYIATGHYVR-RADV--NGKSR--LLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR +A ++GL A K DS ICF+ + K+ D + R A G I+ ++G Sbjct: 171 GELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDE 228 Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL- 305 +G H G++ +T+GQR+GLG+ +P +VV D +N+ ++ E + + L Sbjct: 229 IGEHQGLMYHTLGQRKGLGIGGTKDGTEDPWYVVDKDVENNVLIVAQGHEHPRLMSVGLI 288 Query: 306 -REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363 ++++W+ F + +C VK R Q +P + +DD + V F++ V GQ Sbjct: 289 AQQLHWVDREPFTGTL----RCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQ 344 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY+ + LGGGII Sbjct: 345 SAVFYSGEV----CLGGGIIE 361 >gi|312795152|ref|YP_004028074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia rhizoxinica HKI 454] gi|312166927|emb|CBW73930.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) [Burkholderia rhizoxinica HKI 454] Length = 380 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 129/374 (34%), Positives = 185/374 (49%), Gaps = 27/374 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVV+ MSGGVDSSV A LLK+ GY+V+G+ ++ + S+ C + QD D V D Sbjct: 5 RVVIGMSGGVDSSVAAWLLKQQGYEVVGLFMKNWEDDDDSEY---CSSRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ ++++ V F Y+AG TP P V CN +KF L LGA + Sbjct: 62 LIGIDVEAVNFAAQYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGAQTI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G+R ++ + +D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRRI----GERFELL-KALDSSKDQSYFLHRLNQSQLSRTLFPLGELPKTRVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + + R G + +G+++G H G+ Sbjct: 177 EIAAQIGLPNAAKKDSTGICFIGERPFRTFLNRYLP--TRPGPMRTPDGKVVGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDK--NSSRVIVGP-RESLEVHRIYLREINWLGD 313 YT+GQR+G+G+ GEP FV D N+ V+ G L + +W+ Sbjct: 235 YTLGQRKGIGLGGSRDGSGEPWFVAGKDMAGNTLYVVQGHDHPWLLSSTLQAENASWIAG 294 Query: 314 GLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 A DG C K R QD F D + F +S+ V GQ+ V Y D Sbjct: 295 A----APQDGHSCTAKTRYRQQDAACTFQHAPDRHFALHFAQSQWAVTPGQSAVLYDGDV 350 Query: 373 NEARVLGGGIISGS 386 LGGGII + Sbjct: 351 ----CLGGGIIGAT 360 >gi|184158965|ref|YP_001847304.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii ACICU] gi|294840582|ref|ZP_06785265.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter sp. 6014059] gi|205811014|sp|B2HVN5|MNMA_ACIBC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|183210559|gb|ACC57957.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Acinetobacter baumannii ACICU] gi|322508947|gb|ADX04401.1| trmU [Acinetobacter baumannii 1656-2] gi|323518933|gb|ADX93314.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii TCDC-AB0715] Length = 377 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 123/374 (32%), Positives = 200/374 (53%), Gaps = 23/374 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ V D Sbjct: 4 RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAVAD 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F + YAAG TP P + CN+ +KF L LGAD + Sbjct: 61 KIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGADFI 120 Query: 142 ATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY R+ G+ + R +D +DQ+YFL A +++ FP+G+++K V Sbjct: 121 ATGHYARRAETAYNSKGEAYAPLLRGLDKNKDQTYFLHAVHGREINKTLFPVGEIEKPEV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+ L A K DS ICF+ + ++ D +K+ A G IV NG+ +G H+G++ Sbjct: 181 RRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDNGKEVGEHHGLM 238 Query: 261 NYTI-----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YT+ G+ A FV++ D ++R++VG ++ +++ I+W+ Sbjct: 239 YYTLGQRGGIGLGGMKGASEGAWFVLHKDVANNRLVVGQGHDHPLMQSTQLWSEAIDWVA 298 Query: 313 DGLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYT 369 ++ +G +C K R Q VF+ N + GV V+F++ + V GQ+ VFY+ Sbjct: 299 GE--QNIPAEGLRCTAKTRYRQPDQACTVFIDENSEHGVRVEFDEPQRAVTPGQSVVFYS 356 Query: 370 SDSNEARVLGGGII 383 + LGGG+I Sbjct: 357 DEV----CLGGGVI 366 >gi|312966389|ref|ZP_07780611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 2362-75] gi|312288842|gb|EFR16740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 2362-75] Length = 368 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 129/373 (34%), Positives = 204/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V +SGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 7 KVIVGISGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G++ Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ EP +VV D +N+ ++ E + + L ++++W+ Sbjct: 237 YHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVD 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSD 371 F + +C VK R Q +P V+ D D + V F++ V GQ+ VFY Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDADRIEVIFDEPVAAVTPGQSAVFY--- 349 Query: 372 SNEARVLGGGIIS 384 N LGGGII Sbjct: 350 -NGEVCLGGGIIE 361 >gi|294777621|ref|ZP_06743072.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides vulgatus PC510] gi|294448689|gb|EFG17238.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides vulgatus PC510] Length = 351 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 119/363 (32%), Positives = 182/363 (50%), Gaps = 22/363 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++ MSGG DSSV A LL+ GY+V G+T + Y + + + DAR +C+ Sbjct: 9 KVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFYEKENDT---------EYLEDARALCE 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +N+ H +D + FR +I F + Y AG TP+PC CN +K+ L ++ ++G Sbjct: 60 RLNIPHLTYDVRDTFRKTIIDYFINEYMAGHTPVPCTLCNNYLKWPLLKKISDEMGIYHF 119 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R R G + D ++DQS+FL+ Q+ L + P+G++ K VR Sbjct: 120 ATGHYVRRRFINGCYH-----ITTGADPDKDQSFFLWGLPQEILQRMLLPMGNLTKARVR 174 Query: 202 DLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 ++A E G L A K DS +CF + K + G L G G + RH G Sbjct: 175 EIAAERGFLKAAHKRDSLGVCFCPMDYRTFLHKELPEGSILPGKFFDEMGNFIARHKGYP 234 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQRRGLG+ + +FV + ++VI+ ++LE + L+E L + Sbjct: 235 FYTIGQRRGLGIDLNRAVFVKEIIPAENKVILSDLKALEKTEMRLKEWRITNPALLLNK- 293 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 D ++ R + V +Q D+ ++V + +A GQA FY D VLGG Sbjct: 294 -DDIIVKIRYRKQANRCTVTLQ-PDNTLHVQLHEPLTAIAPGQAAAFYRDDV----VLGG 347 Query: 381 GII 383 GII Sbjct: 348 GII 350 >gi|307728482|ref|YP_003905706.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia sp. CCGE1003] gi|307583017|gb|ADN56415.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia sp. CCGE1003] Length = 385 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 127/377 (33%), Positives = 182/377 (48%), Gaps = 33/377 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV MSGGVDSSV A LLK GYDV+G+ ++ + S+ C QD D V D Sbjct: 5 KVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L LGA+ + Sbjct: 62 LIGIDVEAVNFASEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R + R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVR-----ENNGRFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKTKVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++ L A K DS ICF+ + + D + R G + +G+++G H G+ Sbjct: 177 EIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTTDGKVVGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YT GQR+G+G+ GEP FV D S+ + V L H + ++W+ Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAGKDIASNTLFVAQGHDHPWLLSHTLTAGNVSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVF------VQRNDDGVYVDFEKSEVGVASGQACV 366 + +GF C K R Q D F +D + F++++ V GQ+ V Sbjct: 295 ----EPPPEGFACGAKTRYRQADARCTFRSASGATTNGEDLFELTFDEAQWAVTPGQSAV 350 Query: 367 FYTSDSNEARVLGGGII 383 Y D LGGGII Sbjct: 351 LYDGDV----CLGGGII 363 >gi|167847243|ref|ZP_02472751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei B7210] Length = 373 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 129/377 (34%), Positives = 181/377 (48%), Gaps = 30/377 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L LGA + Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + D + R G + +G+ +G+H G+ Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGKHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313 YT GQR+G+G+ GEP FV D N+ V+ G L + ++W+ Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + DG +C K R Q P Q D+ + F++ + V GQ+ V Y Sbjct: 295 ----EPPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWAVTPGQSAVLYD 350 Query: 370 SDSNEARVLGGGIISGS 386 D LGGGII + Sbjct: 351 GDV----CLGGGIIESA 363 >gi|109898694|ref|YP_661949.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudoalteromonas atlantica T6c] gi|122971887|sp|Q15T93|MNMA_PSEA6 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|109700975|gb|ABG40895.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudoalteromonas atlantica T6c] Length = 396 Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 133/392 (33%), Positives = 204/392 (52%), Gaps = 33/392 (8%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 L++ +L N + +V+V MSGGVDSSV A +L + GY V G+ ++ + + C Sbjct: 26 LSATELASNSQK-KVIVGMSGGVDSSVSAYILLQQGYQVEGLFMKNWEEDDNDEY---CA 81 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 A D+ DA+ V D + + + ++ + + V F Y +G TP P + CN+ +KF Sbjct: 82 AADDLKDAQAVADKLGIVLHQINFAAEYWDNVFEYFLEEYKSGRTPNPDIMCNKEIKFKA 141 Query: 129 LLS-VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 L +L AD +ATGHY+R R DG + M R MD +DQSYFL+ +Q + Sbjct: 142 FLEFAAEELEADYIATGHYVRRREV---DGHWQ--MLRGMDDNKDQSYFLYTLGEQHVGQ 196 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 FP+GD++K VR++A+E GL DK DS ICF+ + K+ D + + A G I Sbjct: 197 TLFPIGDIEKPQVREIAQEQGLITHDKKDSTGICFIGERKFTDFLSQYLP--AQPGVIET 254 Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGE----PLFVVYLDKNSSRVIVG-----PRES 297 GQ +G+H G++ +T+GQR+GL + M E P +VV D + +IVG PR Sbjct: 255 PEGQEIGQHQGLMYHTLGQRKGLMIGGMKEFGDDPWYVVDKDMARNVLIVGQGADHPR-- 312 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSE 356 L + + +++W+ KC VK R Q+ + + DG V V F++ + Sbjct: 313 LYSNGLIANQLHWVD----RTGPTSPMKCSVKTRYRQEDIACTLTPEPDGNVRVMFDEPQ 368 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIISGSKR 388 V GQ+ VFY ++ LGGGII R Sbjct: 369 KAVTPGQSAVFYLNEV----CLGGGIIESYIR 396 >gi|330881196|gb|EGH15345.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. glycinea str. race 4] Length = 303 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 104/277 (37%), Positives = 161/277 (58%), Gaps = 15/277 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 3 RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F Y AG TP P + CNR +KF L LGAD++ Sbjct: 60 KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K VR Sbjct: 120 ATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH+G++ Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMY 232 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG 293 +TIGQR+GLG+ A +P +V+ D +++ +IVG Sbjct: 233 HTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVG 269 >gi|169795184|ref|YP_001712977.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii AYE] gi|213158152|ref|YP_002320203.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter baumannii AB0057] gi|215482732|ref|YP_002324930.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter baumannii AB307-0294] gi|239501147|ref|ZP_04660457.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter baumannii AB900] gi|260556664|ref|ZP_05828882.1| tRNA methyl transferase [Acinetobacter baumannii ATCC 19606] gi|294837181|ref|ZP_06781864.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter sp. 6013113] gi|294860682|ref|ZP_06798451.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter sp. 6013150] gi|301346855|ref|ZP_07227596.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii AB056] gi|301511134|ref|ZP_07236371.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii AB058] gi|301596413|ref|ZP_07241421.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii AB059] gi|205811029|sp|B0VBY5|MNMA_ACIBY RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205815008|sp|A3M7G3|MNMA_ACIBT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|226704765|sp|B7GZ21|MNMA_ACIB3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|226704766|sp|B7I4K8|MNMA_ACIB5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|169148111|emb|CAM85974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter baumannii AYE] gi|213057312|gb|ACJ42214.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter baumannii AB0057] gi|213987036|gb|ACJ57335.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter baumannii AB307-0294] gi|260409923|gb|EEX03223.1| tRNA methyl transferase [Acinetobacter baumannii ATCC 19606] Length = 377 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 123/374 (32%), Positives = 200/374 (53%), Gaps = 23/374 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ V D Sbjct: 4 RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTEY---CTAMEDLADAQAVAD 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F + YAAG TP P + CN+ +KF L LGAD + Sbjct: 61 KIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGADFI 120 Query: 142 ATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY R+ G+ + R +D +DQ+YFL A +++ FP+G+++K V Sbjct: 121 ATGHYARRAETAYNSKGEAYAPLLRGLDNNKDQTYFLHAVHGREINKTLFPVGEIEKPEV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+ L A K DS ICF+ + ++ D +K+ A G IV NG+ +G H+G++ Sbjct: 181 RRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDNGKEVGEHHGLM 238 Query: 261 NYTI-----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YT+ G+ A FV++ D ++R++VG ++ +++ I+W+ Sbjct: 239 YYTLGQRGGIGLGGMKGASEGAWFVLHKDVANNRLVVGQGHDHPLMQSTQLWSEAIDWVA 298 Query: 313 DGLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYT 369 ++ +G +C K R Q VF+ N + GV V+F++ + V GQ+ VFY+ Sbjct: 299 GE--QNIPAEGLRCTAKTRYRQPDQACTVFIDENSEHGVRVEFDEPQRAVTPGQSVVFYS 356 Query: 370 SDSNEARVLGGGII 383 + LGGG+I Sbjct: 357 DEV----CLGGGVI 366 >gi|319746158|gb|EFV98430.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae ATCC 13813] Length = 397 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 140/381 (36%), Positives = 199/381 (52%), Gaps = 25/381 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 ++RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V Sbjct: 30 NIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAV 86 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 87 ADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGAD 146 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + V D M R +D +DQ+YFL +Q+QL FPLG ++K Sbjct: 147 YVATGHYAQ----VTRDKNGIVHMLRGVDNNKDQTYFLSQLSQEQLQKTLFPLGHLQKPE 202 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E GL A K DS ICF+ + + D + + A G ++ ++G+ +G H G+ Sbjct: 203 VRRIAEEAGLATAKKKDSTGICFIGEKNFKDFLGQYLP--AQPGRMMTVDGRDMGEHAGL 260 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + YTIGQR GLG+ +P FVV D + + + VG +SL + EI++ Sbjct: 261 MYYTIGQRGGLGIGGQHGGDNKPWFVVGKDLSKNILYVGQGFYHDSLMSTSLTASEIHFT 320 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 D E + +C K R Q V V + V F+ + + GQA VFY Sbjct: 321 RDMPNEFKL----ECTAKFRYRQPDSKVTVYVKGNQARVVFDDLQRAITPGQAVVFY--- 373 Query: 372 SNEARVLGGGIISGSKRSDAV 392 NE LGGG+I + R D + Sbjct: 374 -NEQECLGGGMIDQAYRDDKI 393 >gi|221214491|ref|ZP_03587462.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia multivorans CGD1] gi|221165748|gb|EED98223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia multivorans CGD1] Length = 381 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 181/371 (48%), Gaps = 27/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L LGA+ + Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + D + R G + +G+++G H G+ Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKLVGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGD 313 YT GQR+G+G+ GEP FV D N+ V+ G + R + ++W+ Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIPSNTLYVVQGHDHPWLLSRGLVAGNVSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + +GF C K R Q D F + + + F ++ V GQ+ V Y + Sbjct: 295 ----EPPAEGFACGAKTRYRQADAACTFARAGGERFSLAFADAQWAVTPGQSAVLYDGEI 350 Query: 373 NEARVLGGGII 383 LGGGII Sbjct: 351 ----CLGGGII 357 >gi|157165469|ref|YP_001467209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter concisus 13826] gi|205811585|sp|A7ZEK1|MNMA_CAMC1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|112799930|gb|EAT97274.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter concisus 13826] Length = 340 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 120/369 (32%), Positives = 198/369 (53%), Gaps = 35/369 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++VAMSGGVDS++ A L+ G++V G + L+ + +++ ++V Sbjct: 1 MKIMVAMSGGVDSTMTAKFLQEAGHEVQGCYMMLHQKPGYHE--------ENIRKVKKVG 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + ++ D +++F V PF Y G+TP PC CN+ +K LL + G + Sbjct: 53 EYLGIKVHILDLQDKFNEYVYDPFVRLYKEGKTPNPCALCNKFIKLGALLDFAKVNGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY++ DG I C D +DQSYFL ++ L D+ FPLGD K+ + Sbjct: 113 LATGHYVQVV-----DG---FITC-AKDPSKDQSYFLAQVPKEVLKDVIFPLGDKFKKDI 163 Query: 201 RDLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 ++LAR + + + A +++S +ICFV+ Y +V+ + + L G++V +G I+GRH G Sbjct: 164 KELARGVKVLEEFATQAESSEICFVEN-TYIEVLNK-HYNTNLPGNVVDKDGNIIGRHQG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V EP FV+ ++ + ++VG ++ L + L +N LF Sbjct: 222 YMHYTIGKRRGFEVFGAHEPHFVIKINAEKNEIVVGTKDDLAQKVVELENVN-----LFI 276 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 D D F+C KIR + FV+ ++ + ++ +GVA GQ CV Y D Sbjct: 277 DE--DKFECETKIRYRSPKLEAFVEVDKSSKTAKLTLNQNALGVAQGQLCVMYDGD---- 330 Query: 376 RVLGGGIIS 384 RV+ G I Sbjct: 331 RVIASGFIK 339 >gi|53720497|ref|YP_109483.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia pseudomallei K96243] gi|126440060|ref|YP_001060365.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia pseudomallei 668] gi|167817350|ref|ZP_02449030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 91] gi|167904220|ref|ZP_02491425.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei NCTC 13177] gi|217421190|ref|ZP_03452695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 576] gi|81379110|sp|Q63QY5|MNMA_BURPS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205813851|sp|A3NDE4|MNMA_BURP6 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|52210911|emb|CAH36899.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei K96243] gi|126219553|gb|ABN83059.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 668] gi|217396602|gb|EEC36619.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 576] Length = 383 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 129/377 (34%), Positives = 180/377 (47%), Gaps = 30/377 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L LGA + Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + D + R G + +G+ +G H G+ Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313 YT GQR+G+G+ GEP FV D N+ V+ G L + ++W+ Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + DG +C K R Q P Q D+ + F++ + V GQ+ V Y Sbjct: 295 ----EPPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWAVTPGQSAVLYD 350 Query: 370 SDSNEARVLGGGIISGS 386 D LGGGII + Sbjct: 351 GDV----CLGGGIIESA 363 >gi|160890666|ref|ZP_02071669.1| hypothetical protein BACUNI_03111 [Bacteroides uniformis ATCC 8492] gi|270295763|ref|ZP_06201963.1| tRNA methyl transferase [Bacteroides sp. D20] gi|317479803|ref|ZP_07938923.1| tRNA methyl transferase [Bacteroides sp. 4_1_36] gi|156859665|gb|EDO53096.1| hypothetical protein BACUNI_03111 [Bacteroides uniformis ATCC 8492] gi|270273167|gb|EFA19029.1| tRNA methyl transferase [Bacteroides sp. D20] gi|316904009|gb|EFV25843.1| tRNA methyl transferase [Bacteroides sp. 4_1_36] Length = 364 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 125/383 (32%), Positives = 192/383 (50%), Gaps = 47/383 (12%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N RV+V MSGG+DS+ +L+ GY++IG+T+ ++ G + +A Sbjct: 2 NKPGKRVLVGMSGGIDSTATCLMLREQGYEIIGLTMWVW--------------GDEPVEA 47 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + D++ + HYV D + FR ++ F Y G TP PCV CN KF L +L Sbjct: 48 RSLADSMGIEHYVADERDAFRRIIVRNFIDEYRRGRTPNPCVMCNPLFKFRILTEWADRL 107 Query: 137 GADVLATGHYIR-------SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 G +ATGHY R + + GDD K +DQSYFL+ Q+ L Sbjct: 108 GCAFVATGHYTRLEERNGKTYIVAGDDDK------------KDQSYFLWRLGQEVLKRCI 155 Query: 190 FPLGDMKKESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDI 245 FPLG K VR R+ G + A++ +S ++CF+ +G Y D ++ + I E G Sbjct: 156 FPLGAFTKMQVRGYLRDKGYTLKAEEGESMEVCFI-KGDYRDFLREHSPEIDSEVGPGWF 214 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 V+ G LG H G YTIGQR+GL +A+G+P +V+ ++ + V++G E L+ + Sbjct: 215 VNSEGVKLGGHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKAGYMLA 274 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364 E N + + F + + V+IR P+P V+R +DG + V F +A GQ+ Sbjct: 275 EEENLIDEAEFFGSE----ELTVRIRYRSKPIPCTVKRLEDGRLLVRFLSEASAIAPGQS 330 Query: 365 CVFYTSDSNEARVLGGGIISGSK 387 VFY RV+GG I+ + Sbjct: 331 AVFYVG----RRVVGGSFIASQR 349 >gi|84391736|ref|ZP_00991638.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio splendidus 12B01] gi|84376449|gb|EAP93328.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio splendidus 12B01] Length = 378 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 199/386 (51%), Gaps = 27/386 (6%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72 D+ + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + + C A +D Sbjct: 3 DISSGNSEKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNW---EEDDNEEYCTAAED 59 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 + DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 LADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEF 119 Query: 133 TRQ-LGADVLATGHYIRSRLYVGD--DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 + L AD +A GHY+R + D + M R +D +DQSYFL+ + Q+ Sbjct: 120 ADEVLDADYIAMGHYVRRTFPTQEELDAGVKPEMLRGLDGNKDQSYFLYTLSSDQVARSL 179 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 FP+G+++K VR +A E L A K DS ICF+ + K+ + + + A G+I Sbjct: 180 FPVGELEKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGNIETPE 237 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMG-------EPLFVVYLD-KNSSRVIVGPRES--LE 299 GQ++G+H G++ +T+GQR+GL + +P FV D K + + V ++ L+ Sbjct: 238 GQVIGQHQGLMYHTLGQRKGLHIGGTKGGGGNEDPWFVGEKDLKRNVLIAVQGKDHPLLK 297 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVG 358 + +++W+ + + C VK R Q +P + +DD + V F++ ++ Sbjct: 298 SEGLIASQLHWVN----RTPITEVMTCTVKTRYRQTDIPCTIIPIDDDNIKVIFDEPQIA 353 Query: 359 VASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGGII Sbjct: 354 VTPGQSAVFYQDEV----CLGGGIIE 375 >gi|26107782|gb|AAN79981.1|AE016759_255 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli CFT073] Length = 383 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 132/394 (33%), Positives = 209/394 (53%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 61 EEY---CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L + L AD +ATGHY+R R V DGK R + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLCADYIATGHYVR-RAXV--DGKSR--LLRGLDSNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + R Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRKFLGRYLP-- 230 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVG 293 A G I+ ++G +G H G++ +T+GQR+GLG+ EP +VV D +N+ ++ Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQ 290 Query: 294 PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYV 350 E + + L ++++W+ F + +C VK R Q +P V+ D D + V Sbjct: 291 GHEHPRLMSVGLIAQQLHWVDREPFTGTM----RCTVKTRYRQTDIPCTVKALDADRIEV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY N LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFY----NGEVCLGGGIIE 376 >gi|260549713|ref|ZP_05823930.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter sp. RUH2624] gi|260407230|gb|EEX00706.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter sp. RUH2624] Length = 377 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 123/377 (32%), Positives = 200/377 (53%), Gaps = 23/377 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ V D Sbjct: 4 RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTEY---CTAMEDLADAQAVAD 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F + YAAG TP P + CN+ +KF L LGAD + Sbjct: 61 KIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGADFI 120 Query: 142 ATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY R+ G+ + R +D +DQ+YFL A +++ FP+G+++K V Sbjct: 121 ATGHYARRAETAYNSKGEAYAPLLRGLDNNKDQTYFLHAVHGREINKTLFPVGEIEKPEV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+ L A K DS ICF+ + ++ D +K+ A G IV NG+ +G H+G++ Sbjct: 181 RRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDNGKEVGEHHGLM 238 Query: 261 NYTI-----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312 YT+ G+ A FV++ D ++R++VG ++ +++ I+W+ Sbjct: 239 YYTLGQRGGIGLGGMKGAAEGAWFVLHKDVANNRLVVGQGHEHPLMQSTQLWSESIDWVA 298 Query: 313 DGLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYT 369 + +G +C K R Q VF+ N + GV V+F++ + V GQ+ VFY+ Sbjct: 299 GE--QHIPAEGLRCTAKTRYRQPDQACTVFIDENSEHGVRVEFDEPQRAVTPGQSVVFYS 356 Query: 370 SDSNEARVLGGGIISGS 386 + LGGG+I + Sbjct: 357 DEV----CLGGGVIHHT 369 >gi|77412483|ref|ZP_00788784.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae CJB111] gi|77161459|gb|EAO72469.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae CJB111] Length = 373 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 140/381 (36%), Positives = 199/381 (52%), Gaps = 25/381 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 ++RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V Sbjct: 6 NIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 63 ADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + V D M R +D +DQ+YFL +Q+QL FPLG ++K Sbjct: 123 YVATGHYAQ----VTRDKNGIVHMLRGVDNNKDQTYFLSQLSQEQLQKTLFPLGHLQKPE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E GL A K DS ICF+ + + D + + A G ++ ++G+ +G H G+ Sbjct: 179 VRRIAEEAGLATAKKKDSTGICFIGEKNFKDFLGQYLP--AQPGRMMTVDGRDMGEHAGL 236 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + YTIGQR GLG+ +P FVV D + + + VG +SL + EI++ Sbjct: 237 MYYTIGQRGGLGIGGQHGGDNKPWFVVGKDLSKNILYVGQGFYHDSLMSTSLTASEIHFT 296 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 D E + +C K R Q V V + V F+ + + GQA VFY Sbjct: 297 RDMPNEFKL----ECTAKFRYRQPDSKVTVYVKGNQARVVFDDLQRAITPGQAVVFY--- 349 Query: 372 SNEARVLGGGIISGSKRSDAV 392 NE LGGG+I + R D + Sbjct: 350 -NEQECLGGGMIDQAYRDDKI 369 >gi|161525855|ref|YP_001580867.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia multivorans ATCC 17616] gi|189349424|ref|YP_001945052.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia multivorans ATCC 17616] gi|205811411|sp|A9AH63|MNMA_BURM1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|160343284|gb|ABX16370.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia multivorans ATCC 17616] gi|189333446|dbj|BAG42516.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Burkholderia multivorans ATCC 17616] Length = 381 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 181/371 (48%), Gaps = 27/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L LGA+ + Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + D + R G + +G+++G H G+ Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKLVGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGD 313 YT GQR+G+G+ GEP FV D N+ V+ G + R + ++W+ Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRELVAGNVSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + +GF C K R Q D F + + + F ++ V GQ+ V Y + Sbjct: 295 ----EPPAEGFACGAKTRYRQADAACTFARAGGERFSLAFADAQWAVTPGQSAVLYDGEI 350 Query: 373 NEARVLGGGII 383 LGGGII Sbjct: 351 ----CLGGGII 357 >gi|16760109|ref|NP_455726.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142120|ref|NP_805462.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413780|ref|YP_150855.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161614531|ref|YP_001588496.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168233116|ref|ZP_02658174.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168244308|ref|ZP_02669240.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168467196|ref|ZP_02701038.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822341|ref|ZP_02834341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444280|ref|YP_002040490.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449928|ref|YP_002045236.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472097|ref|ZP_03078081.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197249278|ref|YP_002146807.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197362703|ref|YP_002142340.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198245672|ref|YP_002215901.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|204930753|ref|ZP_03221626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353032|ref|YP_002226833.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857259|ref|YP_002243910.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213428090|ref|ZP_03360840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580464|ref|ZP_03362290.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213612639|ref|ZP_03370465.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213648222|ref|ZP_03378275.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|224584258|ref|YP_002638056.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|24638320|sp|Q8Z7G9|MNMA_SALTI RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71658018|sp|Q5PMJ4|MNMA_SALPA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205816911|sp|A9N4K8|MNMA_SALPB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|25298380|pir||AC0647 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502403|emb|CAD08358.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29137749|gb|AAO69311.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128037|gb|AAV77543.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161363895|gb|ABX67663.1| hypothetical protein SPAB_02280 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402943|gb|ACF63165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408232|gb|ACF68451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458461|gb|EDX47300.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195630429|gb|EDX49055.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094180|emb|CAR59684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212981|gb|ACH50378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197940188|gb|ACH77521.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|204320212|gb|EDZ05416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205272813|emb|CAR37739.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205332653|gb|EDZ19417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336786|gb|EDZ23550.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341217|gb|EDZ27981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206709062|emb|CAR33395.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468785|gb|ACN46615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322616610|gb|EFY13519.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619875|gb|EFY16749.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622443|gb|EFY19288.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629439|gb|EFY26216.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632935|gb|EFY29678.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636820|gb|EFY33523.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641380|gb|EFY38019.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645145|gb|EFY41674.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652308|gb|EFY48664.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655660|gb|EFY51962.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660965|gb|EFY57195.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665449|gb|EFY61637.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667574|gb|EFY63735.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673632|gb|EFY69734.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677558|gb|EFY73622.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679777|gb|EFY75816.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687250|gb|EFY83222.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193058|gb|EFZ78280.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199445|gb|EFZ84538.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203633|gb|EFZ88655.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208826|gb|EFZ93764.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323217800|gb|EGA02515.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323218889|gb|EGA03400.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226637|gb|EGA10837.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229603|gb|EGA13726.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232828|gb|EGA16924.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240136|gb|EGA24180.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242877|gb|EGA26898.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246793|gb|EGA30763.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254307|gb|EGA38124.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255573|gb|EGA39332.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259407|gb|EGA43043.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267003|gb|EGA50488.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272107|gb|EGA55521.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 368 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 129/381 (33%), Positives = 208/381 (54%), Gaps = 30/381 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + ++PK +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ Sbjct: 1 MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADL 55 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 56 ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + LGAD +ATGHY+R R V +GK R + R +D +DQSYFL+ +Q+ FP+ Sbjct: 116 AEDLGADYIATGHYVR-RADV--NGKSR--LLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR +A ++GL A K DS ICF+ + K+ D + R A G I+ ++G Sbjct: 171 GELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDE 228 Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL- 305 +G H G++ +T+GQR+GLG+ +P +VV D +N+ ++ E + + L Sbjct: 229 IGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGHEHPRLMSVGLI 288 Query: 306 -REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363 ++++W+ F + +C VK R Q +P + +DD + V F++ V GQ Sbjct: 289 AQQLHWVDREPFTGTL----RCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQ 344 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY+ + LGGGII Sbjct: 345 SAVFYSGEV----CLGGGIIE 361 >gi|24380473|ref|NP_722428.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans UA159] gi|30173426|sp|Q8DRS4|MNMA_STRMU RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|24378503|gb|AAN59734.1|AE015035_3 putative tRNA [Streptococcus mutans UA159] Length = 373 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 135/381 (35%), Positives = 199/381 (52%), Gaps = 29/381 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R D +DQ+YFL +Q+QL + FPLG ++K VR Sbjct: 125 ATGHYAQ----VSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLQKPRVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A + GL A K DS ICF+ + + + + A +G ++ ++G+ +G HNG++ Sbjct: 181 EIAEKAGLVTAKKKDSTGICFIGEKNFKEFLSSYLP--AQKGRMMTIDGRDMGEHNGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR G+G+ P FVV D + + + VG ++L + +++ Sbjct: 239 YTIGQRGGMGIGGQKGGDNAPWFVVGKDLSQNILYVGQGFYHDALMSTSLTASQVH---- 294 Query: 314 GLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 F + D F C K R Q V V+ N D V F++ + + GQA VFY D Sbjct: 295 --FTQNMPDKFTLNCTAKFRYRQPDSKVDVKVNGDKAEVIFDEPQRAITPGQAVVFYDGD 352 Query: 372 SNEARVLGGGIISGSKRSDAV 392 LGGG+I + + + + Sbjct: 353 ----ECLGGGLIDNAYQEEKI 369 >gi|330446458|ref|ZP_08310110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490649|dbj|GAA04607.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 371 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 124/378 (32%), Positives = 203/378 (53%), Gaps = 32/378 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDNDEY---CSAAEDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 65 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY R R + +G++ + M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 125 IAMGHYTR-RSFPTAEGEKPQ-MLRGVDNNKDQSYFLYTLSHEQIARSLFPVGELEKPEV 182 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGI 259 R +A E GL A K DS ICF+ + K+ + + + A G IV + G+ +G H G+ Sbjct: 183 RRIAEEQGLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGKIVTADEGKEIGEHQGL 240 Query: 260 INYTIGQRRGL-------GVAMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLRE 307 + +T+GQR+GL G + +VV D ++ +IVG PR L+ + + ++ Sbjct: 241 MYHTLGQRKGLHIGGQKGGNGHEDAWYVVDKDVENNLLIVGQGKDHPR--LKSNGLIAKQ 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACV 366 ++W+ + + C VK R Q +P + +D+ + V F++ ++ V GQ+ V Sbjct: 299 LHWVD----RQPIRETMACTVKTRYRQQDIPCTIIPVDDETIKVIFDEPQIAVTPGQSAV 354 Query: 367 FYTSDSNEARVLGGGIIS 384 FY N LGGGII Sbjct: 355 FY----NGEICLGGGIIE 368 >gi|53726189|ref|YP_103922.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia mallei ATCC 23344] gi|67642326|ref|ZP_00441084.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei GB8 horse 4] gi|121599684|ref|YP_991629.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia mallei SAVP1] gi|124385119|ref|YP_001027125.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia mallei NCTC 10229] gi|126448036|ref|YP_001082070.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia mallei NCTC 10247] gi|167000516|ref|ZP_02266328.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei PRL-20] gi|254178980|ref|ZP_04885634.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei ATCC 10399] gi|254202634|ref|ZP_04908997.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei FMH] gi|254207974|ref|ZP_04914324.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei JHU] gi|254355888|ref|ZP_04972166.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei 2002721280] gi|81604334|sp|Q62H98|MNMA_BURMA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205811421|sp|A3MP84|MNMA_BURM7 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205811429|sp|A2S5A6|MNMA_BURM9 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205811467|sp|A1V076|MNMA_BURMS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|52429612|gb|AAU50205.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei ATCC 23344] gi|121228494|gb|ABM51012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei SAVP1] gi|124293139|gb|ABN02408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei NCTC 10229] gi|126240906|gb|ABO03999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei NCTC 10247] gi|147746881|gb|EDK53958.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei FMH] gi|147751868|gb|EDK58935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei JHU] gi|148024863|gb|EDK83041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei 2002721280] gi|160694894|gb|EDP84902.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei ATCC 10399] gi|238523456|gb|EEP86894.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei GB8 horse 4] gi|243063570|gb|EES45756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei PRL-20] Length = 383 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 129/377 (34%), Positives = 180/377 (47%), Gaps = 30/377 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L LGA + Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + D + R G + +G+ +G H G+ Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313 YT GQR+G+G+ GEP FV D N+ V+ G L + ++W+ Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAVKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + DG +C K R Q P Q D+ + F++ + V GQ+ V Y Sbjct: 295 ----EPPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWAVTPGQSAVLYD 350 Query: 370 SDSNEARVLGGGIISGS 386 D LGGGII + Sbjct: 351 GDV----CLGGGIIESA 363 >gi|60683221|ref|YP_213365.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis NCTC 9343] gi|81313727|sp|Q5L8X6|MNMA3_BACFN RecName: Full=tRNA-specific 2-thiouridylase mnmA 3 gi|60494655|emb|CAH09456.1| putative tRNA methyltransferase [Bacteroides fragilis NCTC 9343] gi|301164740|emb|CBW24299.1| putative tRNA methyltransferase [Bacteroides fragilis 638R] Length = 362 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 126/378 (33%), Positives = 190/378 (50%), Gaps = 47/378 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGG+DS+ +L+ GY+++GVT++++ G + DAR + Sbjct: 7 RVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARELAA 52 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + HYV D F++ ++ F Y G TP PCV CN KF L+ +LG D + Sbjct: 53 RMGIEHYVADERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCDWI 112 Query: 142 ATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 ATGHY R +Y+ GDD K +DQSYFL+ Q L FPLG+ Sbjct: 113 ATGHYSRLEERNGHIYIVAGDDDK------------KDQSYFLWRLGQDVLRRCIFPLGN 160 Query: 195 MKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNG 250 K++VRD RE G + K +S ++CF+ +G Y D ++ + E G V G Sbjct: 161 YTKQTVRDYLREKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDAEVGPGWFVSSEG 219 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 LG+H G YTIGQR+GL +A+G+P +V+ ++ + V++G L + + N Sbjct: 220 VKLGQHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAGQLRAEYMVAEQDNI 279 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + ED + V+IR P+P V+R +DG + V F +A GQ+ VFY Sbjct: 280 VD----EDELFACPDLAVRIRYRSRPIPCRVKRLEDGRLLVRFLAEASAIAPGQSAVFYE 335 Query: 370 SDSNEARVLGGGIISGSK 387 RVLGG I+ + Sbjct: 336 G----RRVLGGAFIASQR 349 >gi|168483769|ref|ZP_02708721.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae CDC1873-00] gi|172042905|gb|EDT50951.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae CDC1873-00] Length = 373 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 139/379 (36%), Positives = 199/379 (52%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +R+ +DG M R +D +DQ+YFL +Q+QL FPLG +KK VR Sbjct: 125 ATGHY--ARVVRDEDGTVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLKKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G++ Sbjct: 181 KLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ P FVV D + + + VG +SL + ++++ D Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ C K R Q V V D V F + + + GQA VFY + Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE-- 352 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I + R V Sbjct: 353 --ECLGGGLIDNAYRDGQV 369 >gi|167586157|ref|ZP_02378545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia ubonensis Bu] Length = 382 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 128/371 (34%), Positives = 180/371 (48%), Gaps = 27/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L LGA+ + Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMTLGAETI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + D + R G + +G+ +G H G+ Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313 YT GQR+G+G+ GEP FV D N+ V+ G L R+ ++W Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIPSNTLYVVQGHDHPWLLSRRLVAGNVSWTAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + DGF C K R Q D F + + + F+ ++ V GQ+ V Y + Sbjct: 295 ----EPPADGFACGAKTRYRQADAGCTFARAGGERFSLTFDDAQWAVTPGQSAVLYDGEI 350 Query: 373 NEARVLGGGII 383 +GGGII Sbjct: 351 ----CVGGGII 357 >gi|160871950|ref|ZP_02062082.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsiella grylli] gi|159120749|gb|EDP46087.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsiella grylli] Length = 361 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 125/376 (33%), Positives = 188/376 (50%), Gaps = 31/376 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K RV+V +SGGVDSSV A LLK GY V G+ ++ + + C A D+ DA+ Sbjct: 2 KKKRVMVGLSGGVDSSVAALLLKEQGYQVEGLFMKNWEE---DDTEVYCSASTDIADAQA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 +CD + + ++ + NAV + F + Y G TP P + CN+ +KF L GA Sbjct: 59 ICDKLAIPLRTINFAAEYWNAVFMHFLAEYRRGRTPNPDILCNKEIKFKAFLQYALHTGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + + + C D +DQ+YFL+ Q L FPL + K Sbjct: 119 DFIATGHYAHKSF---QNNMYQLLQC--ADKNKDQTYFLYTLGQHPLAHTLFPLARLTKS 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR-INAGIALE-GDIVHLNGQILGRH 256 VR +A+ G A K DS ICF+ + K+ KR + + L+ G I L G+ +G+H Sbjct: 174 EVRAIAQSKGFVNATKKDSTGICFIGERKF----KRFLQTYLPLQPGPIETLEGETVGQH 229 Query: 257 NGIINYTIGQRRGLGVA-----MGEPLFVV--YLDKNSSRVIVGPRE-SLEVHRIYLREI 308 +G++ YTIGQR+GLG+ +G P +VV L+ N+ V+ G +L + ++ Sbjct: 230 DGLMYYTIGQRQGLGIGGQREKLGVPWYVVDKKLNHNALIVVQGKEHPALFSSNLICTDL 289 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVF 367 +W+ E + C KIR Q P +Q +D +V F+ + + GQ+ VF Sbjct: 290 HWVN----ECPLTLPLNCAAKIRYRQLETPCLIQPCANDAYHVRFKIPQRAITIGQSIVF 345 Query: 368 YTSDSNEARVLGGGII 383 Y LGGGII Sbjct: 346 YQGPV----CLGGGII 357 >gi|255506865|ref|ZP_05382504.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis D(s)2923] gi|289525326|emb|CBJ14802.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydia trachomatis Sweden2] gi|296434876|gb|ADH17054.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis E/150] gi|296438596|gb|ADH20749.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis E/11023] Length = 358 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 132/367 (35%), Positives = 194/367 (52%), Gaps = 27/367 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++VAMSGGVDSSVVA LLK+ G +V+G+ ++ + + + G C A +D D R+ + Sbjct: 5 IIVAMSGGVDSSVVAYLLKKQGECNVVGLFMKNWGEQDEN---GECTATKDFRDVERIAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +Y + + ++ V F YA G TP P V CNR +KF L R+L D L Sbjct: 62 QLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGDFL 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R G DG + R +D +DQSYFL T + L ++ FPLG M K VR Sbjct: 122 ATGHYCRG----GADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTEVR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHNGII 260 +A+E GL A K DS ICF+ + + +++ A GDI+ + Q++GRH G Sbjct: 175 RIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADSP--GDIIDFDTQQVVGRHEGAH 232 Query: 261 NYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYL-REINWLGDGLF 316 YTIGQRRGL + M +P +V+ ++KN ++ G L + L +E+NW Sbjct: 233 YYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYRQELLAKELNWFVP--L 290 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 ++ ++ K V+ RS + V+ D V V F+ V GQ FY D Sbjct: 291 QEPMICSAK--VRYRSPDEKCSVY-PLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI---- 343 Query: 377 VLGGGII 383 LGGG+I Sbjct: 344 CLGGGVI 350 >gi|260913335|ref|ZP_05919816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pasteurella dagmatis ATCC 43325] gi|260632566|gb|EEX50736.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pasteurella dagmatis ATCC 43325] Length = 383 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 127/386 (32%), Positives = 214/386 (55%), Gaps = 29/386 (7%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 L++ L +N K +V+ MSGGVDSSV A +L++ GY V G+ ++ + + C Sbjct: 13 LSTAQLSENSKK-KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---CT 68 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 A D+ DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF Sbjct: 69 AAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLQEYKAGRTPNPDILCNKEIKFKA 128 Query: 129 LLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 L + LGAD +ATGHY+R DG+ + + R +D +DQSYFL+ ++ Q+ Sbjct: 129 FLEYAAEDLGADYIATGHYVRRS---EKDGECQ--LLRGLDNNKDQSYFLYTLSKDQVAQ 183 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 184 SLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGEIKT 241 Query: 248 LNGQILGRHNGIINYTIGQRRGLGV----AMGE-PLFVVYLDKNSSRVIVGP---RESLE 299 ++G ++GRH+G++ +T+GQR+GLG+ M E P +VV D ++ ++V +L Sbjct: 242 VDGVVVGRHDGLMYHTLGQRKGLGIGGVKGMSEDPFYVVEKDLANNVLVVAQGHDNSALL 301 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVG 358 + +++W+ + V +C VK R Q+ +P +Q +D+ + V F+++++ Sbjct: 302 SSGLIASQLHWVDRKVIRKPV----RCTVKTRYRQEDIPCEIQPIDDETIRVVFDEAQIA 357 Query: 359 VASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGG+I Sbjct: 358 VTPGQSAVFYQGEV----CLGGGVIE 379 >gi|145631293|ref|ZP_01787065.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae R3021] gi|144983078|gb|EDJ90578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae R3021] Length = 362 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 124/378 (32%), Positives = 209/378 (55%), Gaps = 32/378 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + +V+ MSGGVDSSV A +L++ GY V G+ ++ + + C A D+ DA+ Sbjct: 2 RQKKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LG 137 VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + LG Sbjct: 59 VCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLG 118 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A +ATGHY+R GDD + + R +D +DQSYFL+ + +Q+ FP+G++KK Sbjct: 119 AHYIATGHYVRR---AGDDENAK--LLRGLDANKDQSYFLYTLSHKQVGQSLFPVGEIKK 173 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR +A ++GL A K DS ICF+ + K+ D + R A G+I ++ +I+GRH+ Sbjct: 174 PIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDDEIIGRHD 231 Query: 258 GIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR-----E 307 G++ +T+GQR+GLG+ A E +VV D ++ +IV + + R++ R + Sbjct: 232 GLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVA--QGHDHPRLFSRGLIASQ 289 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366 ++W+ + + + +C VK R Q +P ++ +D+ + V F++ + V GQ+ V Sbjct: 290 LHWVD----REPIRESLRCTVKTRYRQQDIPCVIESIDDETIRVIFDEPQSAVTPGQSAV 345 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII+ Sbjct: 346 FYLGEV----CLGGGIIA 359 >gi|227544860|ref|ZP_03974909.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus reuteri CF48-3A] gi|300909920|ref|ZP_07127380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus reuteri SD2112] gi|227185134|gb|EEI65205.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus reuteri CF48-3A] gi|300892568|gb|EFK85928.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus reuteri SD2112] Length = 377 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 139/383 (36%), Positives = 201/383 (52%), Gaps = 33/383 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLKR GYDV+GV ++ ++ + G C A +D D +V Sbjct: 8 RVVVGMSGGVDSSVTALLLKRQGYDVVGVFMKNWDD---TDENGVCTATEDYKDVAKVAS 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y G TP P V CN+ +KF + QLGAD + Sbjct: 65 KIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + D+ R +M R D +DQ+YFL +QL + FPL K +R Sbjct: 125 ATGHYADVKR---DENGRMHLM-RAKDQHKDQTYFLSQLDYKQLDKVMFPLAGYTKPEIR 180 Query: 202 DLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 +A E GL ADK DS ICF+ + G + + + + A G++ L+G+++G+H G++ Sbjct: 181 KIAEEAGLATADKKDSVGICFIGEDGHFREFLSQYIP--AQPGNMETLDGKVVGQHMGLM 238 Query: 261 NYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP-RESLEVHRIYLR--EINWLGD 313 YTIGQRRGLG+ EP FV+ D + + VG E+ ++ +L +I+W+ D Sbjct: 239 YYTIGQRRGLGLGGNKESNEPWFVIGKDMKKNVLYVGQGYENSHLYATHLEASDIHWVDD 298 Query: 314 GLFEDAVVD----GFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVF 367 VV F C K R Q V V V ++D V V+F+ + GQA VF Sbjct: 299 ------VVSRYGRDFHCTAKFRYRQTDVGVTVHLSEDDQMVTVEFDDPARAITPGQAVVF 352 Query: 368 YTSDSNEARVLGGGIISGSKRSD 390 Y + LG II + D Sbjct: 353 YDGE----ECLGSAIIDRAYSHD 371 >gi|312869501|ref|ZP_07729656.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus oris PB013-T2-3] gi|311094948|gb|EFQ53237.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus oris PB013-T2-3] Length = 377 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 138/379 (36%), Positives = 198/379 (52%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLKR GYDVIGV ++ ++ + G C A +D D +V Sbjct: 8 RVVVGMSGGVDSSVTALLLKRQGYDVIGVFMKNWDD---TDENGVCTATEDYKDVAKVAA 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y G TP P V CN+ +KF + QLGAD + Sbjct: 65 KIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + D R + R D +DQ+YFL QL + FPL + K +R Sbjct: 125 ATGHYADLKR----DADGRMHLMRAADQHKDQTYFLSQLDYHQLDKVLFPLANYTKPQIR 180 Query: 202 DLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 ++A+E GL A+K DS ICF+ + G + + + + A G++ ++G+++G+H G++ Sbjct: 181 EIAKEAGLATAEKKDSVGICFIGEDGHFREFLSQYIP--AQPGNMETVDGKVVGQHMGLM 238 Query: 261 NYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQRRGLG+ EP FV+ D + + VG E L + +I+W+ D Sbjct: 239 YYTIGQRRGLGLGGNKESNEPWFVIGKDIEKNVLYVGQGYHNEHLYATHLEASDIHWVDD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSD 371 + F C K R Q V V V+ DD V V F+ + GQA VFY D Sbjct: 299 VVSRYG--REFHCTAKFRYRQKDVGVTVRIADDDQMVTVTFDDPARAITPGQAVVFY--D 354 Query: 372 SNEARVLGGGIISGSKRSD 390 E LG II + +D Sbjct: 355 GQEC--LGSAIIDRAYNAD 371 >gi|15838041|ref|NP_298729.1| tRNA-specific 2-thiouridylase MnmA [Xylella fastidiosa 9a5c] gi|14195287|sp|Q9PDD9|MNMA_XYLFA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|9106458|gb|AAF84249.1|AE003974_4 tRNA methyltransferase [Xylella fastidiosa 9a5c] Length = 379 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 126/375 (33%), Positives = 188/375 (50%), Gaps = 30/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R++VAMSGGVDSSV A L + G+ ++ + G C A +D DA VC Sbjct: 5 RIIVAMSGGVDSSVAAWRLNSQRETIAGLFMRNWTD----DGNGQCHAEEDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + ++ + D+ + V F + YA G TP P V CNR +KF L R+LGAD + Sbjct: 61 ILGIAFHFRDFSHEYWQEVFTHFLAEYANGRTPNPDVLCNREIKFKHFLETARELGADSI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + Y ++R + R D +DQSYFL Q+QL FP+GD++K +R Sbjct: 121 ATGHYARIKHY-----RQRWHLLRGADRSKDQSYFLHQLGQEQLAATMFPIGDLEKPQLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA + GL K DS ICF+ + + + +K+ A G+I Q + H G+ Sbjct: 176 QLAHQAGLPTHAKKDSTGICFIGERNFREFLKQYLP--AQPGEIRDPQEQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RESLEVHRIYLRE--INWLGD 313 +T+GQR+GL + P +V+ D ++ + V R+S + +LR +W+ Sbjct: 234 FTLGQRQGLNIGGVRNRPPSPWYVIGKDLATNVLYVDQHRDSPFLQSRWLRSEPAHWVSG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 F C + R Q +P V V RND + VDF +++ V GQ+ V Y D Sbjct: 294 ----SPPAPTFTCTAQTRYRQADEPCKVTV-RNDGSLDVDFTQTQWAVTPGQSLVLY--D 346 Query: 372 SNEARVLGGGIISGS 386 NE LGG +I+ + Sbjct: 347 GNE--CLGGAVIATT 359 >gi|154250437|ref|YP_001411262.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fervidobacterium nodosum Rt17-B1] gi|205816865|sp|A7HNX2|MNMA_FERNB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|154154373|gb|ABS61605.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fervidobacterium nodosum Rt17-B1] Length = 348 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 123/369 (33%), Positives = 193/369 (52%), Gaps = 30/369 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTL-----QLYNSRKASKRKGSCCAGQDVYDA 76 +V V +SGGVDS+V LL GY+V + +LY +++ + CC+ D +DA Sbjct: 4 KVGVLLSGGVDSAVALYLLIEKGYEVTAYHMKTVRDELYITKQIKHK--VCCSPSDTHDA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + + V + E+ F+ +I F S AG+TP PC CN +KF ++ V Sbjct: 62 QLIAKKFGVPFKIIHVEDVFKEKIIDYFISENLAGKTPNPCFFCNDYIKFGFVMDVALSD 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 G D +A+GHY R +GK + R +D E+DQSYFL + +++L + P G+ Sbjct: 122 GMDFVASGHYARIL-----NGK----LYRALDKEKDQSYFLASIKKEKLSKILLPNGEYS 172 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGR 255 KE++RD+A G+ +A K DSQD+CF+ + + G+ +E G+I+ G+I+G+ Sbjct: 173 KETIRDIAERAGIHVAKKIDSQDLCFLPDNDFKSFFEE--RGVKIEPGNIITSEGKIIGK 230 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H G+ YTIGQR+ LGVA G+ L+V + + ++V P + + + + ++ +N D Sbjct: 231 HEGLPFYTIGQRK-LGVAAGQKLYVKAKNVEGNFIVVSPLDEVYQNEMRVKNLNIYVD-- 287 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + D F VKIR VP V+ D + V F + V GQ VFY NE Sbjct: 288 ----LPDEFLATVKIRKKFKEVPCRVEYLKDELKVQFLEPVFAVTPGQIAVFY----NED 339 Query: 376 RVLGGGIIS 384 VL G+I Sbjct: 340 EVLCSGVIE 348 >gi|297537830|ref|YP_003673599.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylotenera sp. 301] gi|297257177|gb|ADI29022.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylotenera sp. 301] Length = 369 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 130/383 (33%), Positives = 200/383 (52%), Gaps = 27/383 (7%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++L+K+ K VVV +SGGVDSSV A LLK+ GY+V G+ ++ + + C + Q Sbjct: 1 MNLNKSSKK-HVVVGLSGGVDSSVTALLLKQQGYEVTGLFMKNWEDDDTDEY---CSSKQ 56 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DA V D I + ++ + +++ V F S Y AG TP P + CN +KF L Sbjct: 57 DLIDAVSVADKIGIDIEAVNFSKEYKDRVFDNFLSEYKAGRTPNPDILCNAEIKFKAFLD 116 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGADV+ATGHY + R G + + + D +DQSYFL Q QL FP Sbjct: 117 HAMGLGADVIATGHYAQVRENPLKPGLFQ--LMKADDGSKDQSYFLHRLNQAQLSKTLFP 174 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNG 250 LG M K VR++AR GL A+K DS ICF+ + + + + + + E G+I G Sbjct: 175 LGQMLKREVREIARGAGLINAEKKDSTGICFIGERPFQEFLSKY---LPREPGEIKTPEG 231 Query: 251 QILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV--GPRESLEVHR- 302 + +G+H G++ YT+GQR+GL + + GEP FV D ++ +IV G + L ++ Sbjct: 232 KTVGKHEGLMYYTLGQRQGLKIGGSRESNGEPWFVAAKDMVANELIVVQGHQHPLLLNDG 291 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361 + ++ W+ D + + + K R Q P + R D V + F + + + Sbjct: 292 LKASQLTWIDD----EEPITNWVYDAKTRYRQPDAPCEIDRLTKDEVEIKFGQKQWAITP 347 Query: 362 GQACVFYTSDSNEARVLGGGIIS 384 GQ+ V Y S+ LGGGII+ Sbjct: 348 GQSAVVYESNV----CLGGGIIT 366 >gi|167920433|ref|ZP_02507524.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei BCC215] gi|237813753|ref|YP_002898204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei MSHR346] gi|254180696|ref|ZP_04887294.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 1655] gi|184211235|gb|EDU08278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 1655] gi|237503455|gb|ACQ95773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei MSHR346] Length = 383 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 129/377 (34%), Positives = 180/377 (47%), Gaps = 30/377 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L LGA + Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + D + R G + +G+ +G H G+ Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313 YT GQR+G+G+ GEP FV D N+ V+ G L + ++W+ Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + DG +C K R Q P Q D+ + F++ + V GQ+ V Y Sbjct: 295 ----EPPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWAVTPGQSAVLYD 350 Query: 370 SDSNEARVLGGGIISGS 386 D LGGGII + Sbjct: 351 GDV----CLGGGIIESA 363 >gi|269303316|gb|ACZ33416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydophila pneumoniae LPCoLN] Length = 361 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 127/368 (34%), Positives = 188/368 (51%), Gaps = 27/368 (7%) Query: 23 VVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 V+VAMSGGVDSSVVA L K+ Y VIG+ ++ + + G C + +D D RVC Sbjct: 5 VIVAMSGGVDSSVVAYLFKKFTNYKVIGLFMKNW---EEDSEGGLCSSTKDYEDVERVCL 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +Y + + +R V F Y+ G TP P + CNR +KF L ++LG D L Sbjct: 62 QLDIPYYTVSFAKEYRERVFARFLKEYSLGYTPNPDILCNREIKFDLLQKKVQELGGDYL 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + + + R D ++DQSYFL T + L ++ FPLG+M K VR Sbjct: 122 ATGHYCRLNTEL-----QETQLLRGCDPQKDQSYFLSGTPKSALHNVLFPLGEMNKTEVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHNGII 260 +A + L A+K DS ICF+ + + + +++ G+I+ + +I+G+H G Sbjct: 177 AIAAQAALPTAEKKDSTGICFIGKRPFKEFLEKFLPNKT--GNIIDWDTKEIVGQHQGAH 234 Query: 261 NYTIGQRRGLGVAMGE-PLFVV--YLDKNSSRVIVGP-RESLEVHRIYLREINWLGDGLF 316 YTIGQRRGL + E P +VV +++NS ++ G L + + RE+NW Sbjct: 235 YYTIGQRRGLDLGGSEKPCYVVGKNIEENSIYIVRGEDHPQLYLRELTARELNWF----- 289 Query: 317 EDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 G C K+R S D +DD V V F + V GQ FY D+ Sbjct: 290 -TPPKSGCHCSAKVRYRSPDEACTIDYSSDDEVKVRFSQPVKAVTPGQTIAFYQGDT--- 345 Query: 376 RVLGGGII 383 LG G+I Sbjct: 346 -CLGSGVI 352 >gi|29840118|ref|NP_829224.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydophila caviae GPIC] gi|33301704|sp|Q820E9|MNMA_CHLCV RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|29834466|gb|AAP05102.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydophila caviae GPIC] Length = 360 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 133/372 (35%), Positives = 191/372 (51%), Gaps = 28/372 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VVVAMSGGVDSSVVA LLK Y VIG+ ++ + + G C +D D RV Sbjct: 5 VVVAMSGGVDSSVVAYLLKTTTPYKVIGLFMKNWEEEDSD---GLCSTAKDYEDVERVAG 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +Y + + +R V F Y+ G TP P V CNR +KF L R+LG D L Sbjct: 62 QLDIPYYTVSFAKEYRERVFSRFLREYSKGYTPNPDVLCNREIKFDLLQRKVRELGGDFL 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY RL +G R + R +D ++DQSYFL T ++ L ++ FPLG M K VR Sbjct: 122 ATGHYC--RLSSAAEG---RHLLRGLDPQKDQSYFLCGTRRESLDNVLFPLGGMTKTKVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-ILGRHNGII 260 +A + L A K DS ICF+ + + +++ + EGDIV + Q ++GRH G Sbjct: 177 AIAEQARLATAQKRDSTGICFIGKRPFKSFLEKFVPNV--EGDIVDYDSQKVVGRHEGAH 234 Query: 261 NYTIGQRRGLGVAMGE-PLFVVY--LDKNSSRVIVGPRESLEVH-RIYLREINWLGDGLF 316 YTIGQRRGL + E P +VV ++KN ++ G L + +E+NW + Sbjct: 235 YYTIGQRRGLDLGGSEKPCYVVGKDMEKNIVYIVRGEDHPLLYQTELTAKELNWF---VS 291 Query: 317 EDAVVDGFKCFVKI--RSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 +++ +C K+ RS + + D V V F + GQ FY + Sbjct: 292 PESIT---RCSAKVRYRSEDEECEILHSDEDSEVRVRFSSPVKAITPGQTIAFYDGE--- 345 Query: 375 ARVLGGGIISGS 386 + LGGG+I S Sbjct: 346 -KCLGGGVIEVS 356 >gi|170781459|ref|YP_001709791.1| tRNA-specific 2-thiouridylase MnmA [Clavibacter michiganensis subsp. sepedonicus] gi|189036220|sp|B0RGA6|MNMA_CLAMS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|169156027|emb|CAQ01162.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clavibacter michiganensis subsp. sepedonicus] Length = 397 Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 137/371 (36%), Positives = 184/371 (49%), Gaps = 26/371 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+++ AMSGGVDS+V AA G+DV GV L L + + R GS CC +D DARR Sbjct: 1 MKILAAMSGGVDSAVAAARAVDAGHDVTGVHLAL-SRMPGTLRTGSRGCCTVEDSMDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ ERF V+ F + Y AG TP PC+ CN +KF+ LL LG Sbjct: 60 AADLLGIPFYVWDFSERFAADVVDDFVAEYQAGRTPNPCMRCNERIKFAALLEKALDLGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197 D + TGHY + + G DG+ + R +DQSY L T +Q+ FPLG K Sbjct: 120 DAVCTGHY--ADVLPGPDGQPE--LHRAAAWAKDQSYVLGVLTAEQIAHSYFPLGSTPSK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQILGRH 256 VR A G+ +A K DS DICF+ G + R+ A GDI+ G +G H Sbjct: 176 AEVRAEAAARGIQVAQKPDSHDICFIPDGDTRGWLADRVG---AEPGDILDGEGNAIGTH 232 Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G +T+GQR+GL + G P FV+ + + V+VGP+E+L + I W G Sbjct: 233 QGAAAFTVGQRKGLAIGTPAPDGRPRFVLEIRPKDNTVVVGPQEALAIREIAGSSYTWAG 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVP----VFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 F C V+IR+ DPVP V V + + GVA GQ V Y Sbjct: 293 TPPTRPD--QPFDCDVQIRAHADPVPARAAVSVVDGSMQLVITPRDPLHGVAPGQTAVVY 350 Query: 369 TSDSNEARVLG 379 RVLG Sbjct: 351 AG----TRVLG 357 >gi|161936317|ref|YP_129360.2| tRNA-specific 2-thiouridylase MnmA [Photobacterium profundum SS9] Length = 371 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 124/378 (32%), Positives = 205/378 (54%), Gaps = 32/378 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + + + C A +D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNW---EEDDNEEYCSAAEDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY R R + +G++ + M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 125 IAMGHYTR-RSFPTAEGEKPK-MLRGVDSNKDQSYFLYTLSHEQIARSLFPVGELEKPEV 182 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGI 259 R +A E L A K DS ICF+ + K+ + + + A G I + G+++G H G+ Sbjct: 183 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGKIETADEGKVIGEHQGL 240 Query: 260 INYTIGQRRGL-------GVAMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLRE 307 + +T+GQR+GL G + + +VV D + +IVG PR L+ + + + Sbjct: 241 MYHTLGQRKGLHIGGQKGGNGLEDAWYVVDKDLKRNVLIVGQGKDHPR--LKSNGLVASQ 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACV 366 ++W+ + + C VK R Q+ +P + +D+ + V F++ ++ V GQ+ V Sbjct: 299 LDWVD----RQPIRETMTCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAV 354 Query: 367 FYTSDSNEARVLGGGIIS 384 FY SNE LGGGII Sbjct: 355 FY---SNEI-CLGGGIIE 368 >gi|319946006|ref|ZP_08020255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus australis ATCC 700641] gi|319747814|gb|EFW00059.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus australis ATCC 700641] Length = 373 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 197/379 (51%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G++ Sbjct: 181 RLAEEAGLATAKKKDSTGICFIGEKNFKEFLG--NYLPAQPGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ P FVV D + + + VG E+L + ++++ + Sbjct: 239 YTIGQRGGLGIGGQQGGDNAPWFVVGKDLSQNILYVGQGFYHEALMSTSLQASQVHFTRE 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ C K R Q V V D V F + + + GQA VFY + Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVTFAEPQRAITPGQAVVFYDGE-- 352 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I + R V Sbjct: 353 --ECLGGGLIDNAYRDGKV 369 >gi|15902166|ref|NP_357716.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae R6] gi|15457661|gb|AAK98926.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae R6] Length = 391 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 144/395 (36%), Positives = 199/395 (50%), Gaps = 38/395 (9%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L + N K RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A + Sbjct: 17 LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 72 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D D V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 73 DYKDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 132 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FP Sbjct: 133 YAMTLGADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 188 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG +KK VR LA E GL A K DS ICF+ + + + + N A G ++ ++G+ Sbjct: 189 LGHLKKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGR 246 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESL 298 +G H G++ YTIGQR GLG+ P FVV D + + + VG SL Sbjct: 247 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSL 306 Query: 299 EVHRIYL-REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV 357 E +++ RE+ E+ ++ C K R Q V V D V F + + Sbjct: 307 EASQVHFTREMP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQR 356 Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGSKRSDAV 392 + GQA VFY + LGGG+I + R V Sbjct: 357 AITPGQAVVFYDGE----ECLGGGLIDNAYRDGQV 387 >gi|260772624|ref|ZP_05881540.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio metschnikovii CIP 69.14] gi|260611763|gb|EEX36966.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio metschnikovii CIP 69.14] Length = 372 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 118/372 (31%), Positives = 193/372 (51%), Gaps = 26/372 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 12 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEE---DDNEEYCTAAEDLADAQAVCD 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 69 KLGIYLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R R + K + M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 129 IAMGHYVR-RTFPTQGEKPQ--MLRGLDSNKDQSYFLYTLSHEQVARSLFPVGELEKPEV 185 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A K DS ICF+ + K+ D + R A G I G+++G H G++ Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 243 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +T+GQR+GL + +P +V D + +I L+ + +++W+ Sbjct: 244 YHTLGQRKGLHIGGLKDGSEQPWYVAEKDLQRNVLIAVQGADHPLLKSQGLVASQLHWVS 303 Query: 313 DGLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + + +C VK R Q D + ++ + V F++ ++ V GQ+ VFY + Sbjct: 304 ----RQTITEPTRCTVKTRYRQTDIACTIIPLDEQNIKVMFDEPQIAVTPGQSAVFYQGE 359 Query: 372 SNEARVLGGGII 383 LGGGII Sbjct: 360 V----CLGGGII 367 >gi|81615317|sp|Q6LT18|MNMA_PHOPR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|46912768|emb|CAG19558.1| putative (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Photobacterium profundum SS9] Length = 377 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 124/378 (32%), Positives = 205/378 (54%), Gaps = 32/378 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + + + C A +D+ DA+ VCD Sbjct: 14 KVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNW---EEDDNEEYCSAAEDLADAQAVCD 70 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 71 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADY 130 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY R R + +G++ + M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 131 IAMGHYTR-RSFPTAEGEKPK-MLRGVDSNKDQSYFLYTLSHEQIARSLFPVGELEKPEV 188 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGI 259 R +A E L A K DS ICF+ + K+ + + + A G I + G+++G H G+ Sbjct: 189 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGKIETADEGKVIGEHQGL 246 Query: 260 INYTIGQRRGL-------GVAMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLRE 307 + +T+GQR+GL G + + +VV D + +IVG PR L+ + + + Sbjct: 247 MYHTLGQRKGLHIGGQKGGNGLEDAWYVVDKDLKRNVLIVGQGKDHPR--LKSNGLVASQ 304 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACV 366 ++W+ + + C VK R Q+ +P + +D+ + V F++ ++ V GQ+ V Sbjct: 305 LDWVD----RQPIRETMTCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAV 360 Query: 367 FYTSDSNEARVLGGGIIS 384 FY SNE LGGGII Sbjct: 361 FY---SNEI-CLGGGIIE 374 >gi|145639770|ref|ZP_01795372.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae PittII] gi|145271138|gb|EDK11053.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae PittII] gi|309750410|gb|ADO80394.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Haemophilus influenzae R2866] Length = 418 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 124/375 (33%), Positives = 208/375 (55%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+ MSGGVDSSV A +L++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 61 KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 117 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 118 KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 177 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 178 IATGHYVRR---AGDNENAK--LLRGLDPNKDQSYFLYTLSHKQVGQSLFPVGEIEKPIV 232 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ D + R A G+I ++ +I+GRH+G++ Sbjct: 233 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDDEIIGRHDGLM 290 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ A E +VV D ++ +IV PR L + +++W Sbjct: 291 YHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQLHW 348 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + + + + +C VK R Q +P ++ +D+ + V F++ + V GQ+ VFY Sbjct: 349 VD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 404 Query: 370 SDSNEARVLGGGIIS 384 ++ LGGGII+ Sbjct: 405 GEA----CLGGGIIA 415 >gi|302879502|ref|YP_003848066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Gallionella capsiferriformans ES-2] gi|302582291|gb|ADL56302.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Gallionella capsiferriformans ES-2] Length = 366 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 190/379 (50%), Gaps = 27/379 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ + S+ C + QD+ DA Sbjct: 3 KNKRVVVGMSGGVDSSVTALLLKQQGYDVIGLFMKNWEDDDNSEY---CSSRQDLLDAVS 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V DTI + ++ + +++ V F Y +G TP P + CN +KF L +LGA Sbjct: 60 VADTIGIPIEAVNFAKEYKDRVFSAFLREYQSGRTPNPDILCNAEIKFKAFLDHAIELGA 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + R DG + + + D +DQSYFL Q QL FPLG + K Sbjct: 120 DTIATGHYAQVREV---DGLFQ--LLKATDASKDQSYFLHRLNQAQLSRAMFPLGRLLKS 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R +A + GL K DS ICF+ + + + + G++ G+ +GRH G Sbjct: 175 EIRKIAEQHGLCNFAKKDSTGICFIGERPFREFLSGYLP--TQPGEMRTPEGKRVGRHIG 232 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINW 310 + YT+GQR+GLG+ + GEP FV D ++R+IV +L H + + +W Sbjct: 233 LSFYTLGQRQGLGIGGEKNSSGEPWFVAAKDMENNRLIVVQGHDHPALLSHTLTALDAHW 292 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + A K R Q P F +++ D + F++ + V GQ+ V Y Sbjct: 293 ISG----SAPKTNHPYAAKTRYRQADAPCHFTEQSGDQCSIAFDQPQWAVTPGQSVVLYE 348 Query: 370 SDSNEARVLGGGIISGSKR 388 + LGG II +R Sbjct: 349 GEV----CLGGAIIEAGQR 363 >gi|255320585|ref|ZP_05361763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter radioresistens SK82] gi|262378583|ref|ZP_06071740.1| tRNA methyl transferase [Acinetobacter radioresistens SH164] gi|255302347|gb|EET81586.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter radioresistens SK82] gi|262299868|gb|EEY87780.1| tRNA methyl transferase [Acinetobacter radioresistens SH164] Length = 377 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 125/374 (33%), Positives = 196/374 (52%), Gaps = 23/374 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 4 RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTEY---CTAMEDLADAQAVCD 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F + YAAG TP P + CN+ +KF L +LGAD + Sbjct: 61 RIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAVKLGADFI 120 Query: 142 ATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY R G+ + R +D +DQ+YFL A +++ FP+G+++K V Sbjct: 121 ATGHYARRGETKYNSQGEAYAELLRGVDTNKDQTYFLHAVHGREINKTLFPVGEIEKPQV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+GL A K DS ICF+ + ++ D +K+ A G IV +G+ +G H+G++ Sbjct: 181 RKIAEELGLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDDGKEVGEHHGLM 238 Query: 261 NYT-----IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312 YT GL A FV+Y D +R++VG ++ ++ I+W+ Sbjct: 239 YYTLGQRGGIGIGGLKGAAEGAWFVLYKDIAGNRLVVGQGHEHPLMQSTILWSEAIDWVA 298 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND---DGVYVDFEKSEVGVASGQACVFYT 369 ++ G +C K R Q V ++D GV V+F+ + V GQ+ VFY+ Sbjct: 299 GE--QEIPASGLRCTAKTRYRQADQDCTVYKDDSSTQGVRVEFDDPQRAVTPGQSVVFYS 356 Query: 370 SDSNEARVLGGGII 383 + LGGG+I Sbjct: 357 GEV----CLGGGVI 366 >gi|260583885|ref|ZP_05851633.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Granulicatella elegans ATCC 700633] gi|260158511|gb|EEW93579.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Granulicatella elegans ATCC 700633] Length = 374 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 135/382 (35%), Positives = 197/382 (51%), Gaps = 37/382 (9%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N +++RV+V MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D D Sbjct: 2 NKENIRVIVGMSGGVDSSVTALLLKQAGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V + I + +Y ++E+ + + V F Y G TP P V CN+ VKF L QL Sbjct: 59 AAVAEQIGIPYYSVNFEKEYWDRVFEYFLKEYRLGRTPNPDVMCNKEVKFQAFLEYALQL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +A GHY +R+ ++G R + R +D +DQ+YFL QQQL FP+G ++ Sbjct: 119 GADYVAMGHY--ARVEKDENGVVR--LLRGVDNNKDQTYFLSQLNQQQLSKAMFPIGHLE 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ VR +A E L A K DS +CF+ + + + + A G +V L+G++ G H Sbjct: 175 KKEVRKIAEEFDLATAKKKDSTGVCFIGERNFNEFLSHYLP--AKPGKMVTLDGEVKGDH 232 Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G++ YTIGQR+GLG+ +P FVV D +++ + VG N Sbjct: 233 AGLMYYTIGQRQGLGIGGGGKTNDPWFVVGKDLSTNTLYVGQG---------FHHPNLYS 283 Query: 313 DGLF--------EDAVVDGFKCFVKIRSSQDPVP---VFVQRNDDGVYVDFEKSEVGVAS 361 D LF ++ + F+C K R Q VF + + V FE+ + Sbjct: 284 DSLFATDLQFNTDEEKPNEFECTAKFRYRQQDTKVRVVFQEDDKTKAMVYFEEPVRAITP 343 Query: 362 GQACVFYTSDSNEARVLGGGII 383 GQA VFY D LGGGII Sbjct: 344 GQAVVFYDGDI----CLGGGII 361 >gi|148827312|ref|YP_001292065.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus influenzae PittGG] gi|205816853|sp|A5UFX6|MNMA_HAEIG RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|148718554|gb|ABQ99681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae PittGG] Length = 385 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 124/375 (33%), Positives = 206/375 (54%), Gaps = 30/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+ MSGGVDSSV A +L++ GY V G+ ++ + C A D+ DA+ VCD Sbjct: 26 KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDDDTD-YCTAAADLADAQAVCD 84 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 85 KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 144 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 145 IATGHYVRR---AGDNENAK--LLRGLDANKDQSYFLYTLSHKQVGQSLFPVGEIEKPIV 199 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ D + R A G+I ++ +I+GRH+G++ Sbjct: 200 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDDEIIGRHDGLM 257 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ A E +VV D ++ +IV PR L + +++W Sbjct: 258 YHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQLHW 315 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + + + + +C VK R Q +P ++ +D+ + V F++ + V GQ+ VFY Sbjct: 316 VD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 371 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII+ Sbjct: 372 GEV----CLGGGIIA 382 >gi|329123820|ref|ZP_08252378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus aegyptius ATCC 11116] gi|327469307|gb|EGF14778.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus aegyptius ATCC 11116] Length = 418 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 125/375 (33%), Positives = 206/375 (54%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+ MSGGVDSSV A +L++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 61 KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 117 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 118 KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 177 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R GDD + + R +D +DQSYFL+ + +Q+ FP+G ++K V Sbjct: 178 IATGHYVRR---AGDDENAK--LLRGLDANKDQSYFLYTLSHKQVGQSLFPVGKIEKPIV 232 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ D + R A G+I ++ +I+GRH+G++ Sbjct: 233 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDDEIIGRHDGLM 290 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ A E +VV D ++ +IV PR L + +++W Sbjct: 291 YHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQLHW 348 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + + + + +C VK R Q +P ++ +D+ + V F++ + V GQ+ VFY Sbjct: 349 VD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 404 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII+ Sbjct: 405 GEV----CLGGGIIA 415 >gi|15835177|ref|NP_296936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydia muridarum Nigg] gi|7190601|gb|AAF39399.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydia muridarum Nigg] Length = 373 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 135/369 (36%), Positives = 188/369 (50%), Gaps = 29/369 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 V+VAMSGGVDSSVVA LLK+ G YDVIG+ ++ + + + G C A +D D ++ + Sbjct: 20 VIVAMSGGVDSSVVAYLLKKQGKYDVIGLFMKNWEEQDEN---GECTATKDFLDVEQIAE 76 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +Y + + ++ V F Y G TP P V CNR +KF L R+L D L Sbjct: 77 QLSIPYYTVSFAKEYKERVFSRFLKEYTNGYTPNPDVLCNREIKFDLLQKKVRELKGDFL 136 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R G DG + R +D +DQSYFL T ++ L ++ FPLG M K VR Sbjct: 137 ATGHYCRG----GLDGTG---LFRGVDPNKDQSYFLCGTPKEALSNVLFPLGGMYKTEVR 189 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-ILGRHNGII 260 LA E GL A K DS ICF+ + + +++ GDIV + Q ++G H G Sbjct: 190 QLAIEAGLATATKKDSTGICFIGKRPFKSFLEQFVPNSP--GDIVDFDTQKVVGCHEGAH 247 Query: 261 NYTIGQRRGLGV-AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGDGLF 316 YTIGQRRGL V M +P +V+ D KN ++ G L + + +E+NW Sbjct: 248 YYTIGQRRGLNVGGMEKPCYVLGKDMQKNVVYIVRGEDHPLLYRKELIAKELNWF----- 302 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375 + C K+R V +DG V V F+ V GQ FY D Sbjct: 303 -VPLQGSITCSAKVRYRSPDEKCSVYPLEDGTVQVVFDIPVKAVTPGQTVAFYQGDV--- 358 Query: 376 RVLGGGIIS 384 LGGG+I+ Sbjct: 359 -CLGGGVIA 366 >gi|114563431|ref|YP_750944.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella frigidimarina NCIMB 400] gi|122299537|sp|Q081F9|MNMA_SHEFN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|114334724|gb|ABI72106.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella frigidimarina NCIMB 400] Length = 372 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 126/385 (32%), Positives = 200/385 (51%), Gaps = 29/385 (7%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 + SL+ N K +V+V MSGGVDSSV A LL + G++V G+ ++ + + C Sbjct: 1 MTSLNPTSNGK--KVIVGMSGGVDSSVSAYLLMQQGFEVEGLFMKNWEEDDTDEY---CA 55 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 56 AADDLKDAQAVCDKLGIKMHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKA 115 Query: 129 LLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 L L AD +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ Sbjct: 116 FLEFADDILDADYIAMGHYVRRR----DNSDGSVEMLRGVDGNKDQSYFLYTLSHEQVAR 171 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 FP+G+++K VR++A+++GL DK DS ICF+ + K+ D + A GDI Sbjct: 172 SLFPVGELEKHQVREIAQKLGLITHDKKDSTGICFIGERKFTDFLATYLP--AQPGDIET 229 Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLE 299 G+++G H G++ +T+GQR+GLG+ + +P +VV D + +IV G L Sbjct: 230 SEGEVIGTHQGLMYHTLGQRKGLGIGGLKNSNEDPWYVVEKDLVRNVLIVAQGGNHPRLM 289 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVG 358 + + +++W+ + VK R Q V + +D D + V F++ Sbjct: 290 STGMTVNQLHWVD----RTGPANNSTITVKTRYRQRDVGCTLTYDDADNITVMFDEPVAA 345 Query: 359 VASGQACVFYTSDSNEARVLGGGII 383 V GQ+ VFY D LGGGII Sbjct: 346 VTPGQSAVFYDGDI----CLGGGII 366 >gi|115350645|ref|YP_772484.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia ambifaria AMMD] gi|122323996|sp|Q0BI73|MNMA_BURCM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|115280633|gb|ABI86150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia ambifaria AMMD] Length = 384 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 183/371 (49%), Gaps = 27/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L L A+++ Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDAEMI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + D + R G + +G+++G H G+ Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVIGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGD 313 YT GQR+G+G+ GEP FV D N+ V+ G + R + ++W+ Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRQLVAGNVSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + DGF C K R Q D F + + + + F+ ++ V GQ+ V Y + Sbjct: 295 ----EPPADGFSCGAKTRYRQADAACSFGRADGERFSLAFDDAQWAVTPGQSAVLYDGEI 350 Query: 373 NEARVLGGGII 383 LGGGII Sbjct: 351 ----CLGGGII 357 >gi|323165641|gb|EFZ51428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shigella sonnei 53G] Length = 357 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 129/368 (35%), Positives = 201/368 (54%), Gaps = 28/368 (7%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD + + Sbjct: 1 MSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCDKLGIE 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGH 145 + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD +ATGH Sbjct: 58 LHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGH 117 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y+R R V DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K VR +A Sbjct: 118 YVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAE 172 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 ++GL A K DS ICF+ + K+ + + R G G I+ ++G +G H G++ +T+G Sbjct: 173 DLGLVTAKKKDSTGICFIGERKFREFLGRYLPGQP--GKIITVDGDEIGEHQGLMYHTLG 230 Query: 266 QRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLGDGLFE 317 QR+GLG+ EP +VV D +N+ V+ E + + L ++++W+ F Sbjct: 231 QRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVDREPFT 290 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY N Sbjct: 291 GTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY----NGEV 342 Query: 377 VLGGGIIS 384 LGGGII Sbjct: 343 CLGGGIIE 350 >gi|22538278|ref|NP_689129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae 2603V/R] gi|25012138|ref|NP_736533.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus agalactiae NEM316] gi|76798859|ref|ZP_00781068.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae 18RS21] gi|77406508|ref|ZP_00783561.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae H36B] gi|77408912|ref|ZP_00785637.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae COH1] gi|54039756|sp|P66979|MNMA_STRA5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|54042260|sp|P66978|MNMA_STRA3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|22535193|gb|AAN01002.1|AE014289_2 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae 2603V/R] gi|24413682|emb|CAD47762.1| Unknown [Streptococcus agalactiae NEM316] gi|76585782|gb|EAO62331.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae 18RS21] gi|77172503|gb|EAO75647.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae COH1] gi|77174880|gb|EAO77696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae H36B] Length = 373 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 141/383 (36%), Positives = 199/383 (51%), Gaps = 29/383 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 ++RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V Sbjct: 6 NIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 63 ADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K Sbjct: 123 YVATGHYAQ----VTRDENGIVHMLRGADNNKDQTYFLSQLSQEQLQKTLFPLGHLQKPE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E GL A K DS ICF+ + + D + + A G ++ ++G+ +G H G+ Sbjct: 179 VRRIAEEAGLATAKKKDSTGICFIGEKNFKDFLGQYLP--AQPGRMMTVDGRDMGEHAGL 236 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + YTIGQR GLG+ +P FVV D + + + VG +SL + EI++ Sbjct: 237 MYYTIGQRGGLGIGGQHGGDNKPWFVVGKDLSKNILYVGQGFYHDSLMSTSLTASEIHFT 296 Query: 312 GDGLFEDAVVDGFK--CFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 D + + FK C K R Q V V + V F+ + + GQA VFY Sbjct: 297 RD------MPNEFKLECTAKFRYRQPDSKVTVYVKGNQARVVFDDLQRAITPGQAVVFY- 349 Query: 370 SDSNEARVLGGGIISGSKRSDAV 392 NE LGGG+I + R D + Sbjct: 350 ---NEQECLGGGMIDQAYRDDKI 369 >gi|237743285|ref|ZP_04573766.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 7_1] gi|229433064|gb|EEO43276.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 7_1] Length = 343 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 119/362 (32%), Positives = 191/362 (52%), Gaps = 22/362 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV+ MSGGVDSSV A LLK GY+VIGVTL + + +D+ DA++VCD Sbjct: 3 KVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENS----------KDIEDAKKVCD 52 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H V + + F N VI F Y +G+TP PCV C+ +KF L + + + + Sbjct: 53 KLEMIHKVVNIRKDFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFDIADKYKTEYV 112 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATG+Y S Y D K ++ + +DQSY L+ + +L L FPL D K+ +R Sbjct: 113 ATGYYT-SVEYSKDFDK--YLLKSVHSIIKDQSYMLYRLSPDKLERLIFPLKDYSKQEIR 169 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL+I +K DSQ ICF ++G Y + +K + G+ V +G ILG H G Sbjct: 170 EIALKIGLEIHNKKDSQGICFAEEG-YKEFLKENLKDEIVRGNYVDKDGNILGEHEGYQL 228 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQRRGLG+ + +P+F+ + ++ +++G L ++ L + E + Sbjct: 229 YTIGQRRGLGINLSKPVFITEIRPLTNEIVLGEFSELFTDKVELMNSKF----SVEYEKL 284 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + + + R S + ++ + +Y + + A GQ VF+ + V+GGG Sbjct: 285 ENLELLARPRFSSTGFYGKLIKDKNKIYFKYNEENAHNAKGQHIVFFY----DGFVVGGG 340 Query: 382 II 383 I Sbjct: 341 EI 342 >gi|291613422|ref|YP_003523579.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sideroxydans lithotrophicus ES-1] gi|291583534|gb|ADE11192.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sideroxydans lithotrophicus ES-1] Length = 361 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 131/378 (34%), Positives = 195/378 (51%), Gaps = 33/378 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + + VVV MSGGVDSSV A LLK GY+VIG+ ++ + S+ C + QD+ DA Sbjct: 5 RKITVVVGMSGGVDSSVTALLLKEQGYEVIGLFMKNWEDDDDSEY---CSSRQDLIDAVS 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V DTI + ++ + +++ V F Y AG TP P + CN +KF L +LGA Sbjct: 62 VADTIGIPIEAVNFAKEYKDRVFNYFLREYEAGRTPNPDILCNSEIKFKAFLDHAIRLGA 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY + R DG + + + D +DQSYFL Q QL FPLGD+ K Sbjct: 122 EKIATGHYAKVR---EQDGAFQ--LLKADDDSKDQSYFLHRLNQHQLSKSMFPLGDIPKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++AR+ L A K DS ICF+ + + + + R GD+V G+++G+H G Sbjct: 177 KVREIARQHNLSNAAKKDSTGICFIGERPFREFLNRYLP--TKPGDMVTPEGKVMGQHMG 234 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR------E 307 + YT GQR+GLG+ + GEP FV D ++R++V H + L+ + Sbjct: 235 LSFYTYGQRQGLGIGGGKDSSGEPWFVAGKDMANNRLLVVQGHD---HPLLLKPQLDALD 291 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACV 366 ++W+GD D D K R Q + N D + F++++ V GQ+ V Sbjct: 292 MHWIGDHA-PDTTRD---YAAKTRYRQQDAACRISINAPDTAHFSFDEAQWAVTPGQSVV 347 Query: 367 FYTSDSNEARVLGGGIIS 384 Y + LGGGII+ Sbjct: 348 AYDGEI----CLGGGIIA 361 >gi|270285349|ref|ZP_06194743.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia muridarum Nigg] gi|270289365|ref|ZP_06195667.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia muridarum Weiss] gi|301336746|ref|ZP_07224948.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia muridarum MopnTet14] gi|14195289|sp|Q9PKA7|MNMA_CHLMU RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 358 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 135/369 (36%), Positives = 188/369 (50%), Gaps = 29/369 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 V+VAMSGGVDSSVVA LLK+ G YDVIG+ ++ + + + G C A +D D ++ + Sbjct: 5 VIVAMSGGVDSSVVAYLLKKQGKYDVIGLFMKNWEEQDEN---GECTATKDFLDVEQIAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +Y + + ++ V F Y G TP P V CNR +KF L R+L D L Sbjct: 62 QLSIPYYTVSFAKEYKERVFSRFLKEYTNGYTPNPDVLCNREIKFDLLQKKVRELKGDFL 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R L DG + R +D +DQSYFL T ++ L ++ FPLG M K VR Sbjct: 122 ATGHYCRGGL----DGTG---LFRGVDPNKDQSYFLCGTPKEALSNVLFPLGGMYKTEVR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-ILGRHNGII 260 LA E GL A K DS ICF+ + + +++ GDIV + Q ++G H G Sbjct: 175 QLAIEAGLATATKKDSTGICFIGKRPFKSFLEQFVPNSP--GDIVDFDTQKVVGCHEGAH 232 Query: 261 NYTIGQRRGLGV-AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGDGLF 316 YTIGQRRGL V M +P +V+ D KN ++ G L + + +E+NW Sbjct: 233 YYTIGQRRGLNVGGMEKPCYVLGKDMQKNVVYIVRGEDHPLLYRKELIAKELNWF----- 287 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375 + C K+R V +DG V V F+ V GQ FY D Sbjct: 288 -VPLQGSITCSAKVRYRSPDEKCSVYPLEDGTVQVVFDIPVKAVTPGQTVAFYQGDV--- 343 Query: 376 RVLGGGIIS 384 LGGG+I+ Sbjct: 344 -CLGGGVIA 351 >gi|327405404|ref|YP_004346242.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fluviicola taffensis DSM 16823] gi|327320912|gb|AEA45404.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fluviicola taffensis DSM 16823] Length = 392 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 132/399 (33%), Positives = 199/399 (49%), Gaps = 46/399 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDSSV A LL+++GY+VIG+ ++ ++ + C D DA + + Sbjct: 3 RVVVGLSGGVDSSVTAHLLQQEGYEVIGLFMRNWHDETVT-LSNDCPWIDDSNDALLIAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + V D + ++ ++ + Y AG TP P V CNR +KF L +LGAD + Sbjct: 62 QLGIPFQVLDLSKEYKERIVDYMFAEYEAGRTPNPDVLCNREIKFDVFLKAAMELGADFV 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R +DG + +D +DQSYFL +Q QL FP+G+++K VR Sbjct: 122 ATGHYCRK--ITTEDGIHH--LLTGLDPNKDQSYFLCQLSQDQLSKALFPIGNLQKSEVR 177 Query: 202 DLAREMGLDIADKSDSQDICFV---------QQ------GKYFDVVKRINAGIALEGDIV 246 +A+E+GL ADK DSQ +CFV QQ GK ++ + N + V Sbjct: 178 AIAKEIGLVTADKKDSQGLCFVGKISLPEFLQQKLEVKYGKIIEINELDNQFLNYSTIPV 237 Query: 247 HLNGQI---------------LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRV 290 +LN I + +H G YTIGQR+GL + P FV+ +D ++ V Sbjct: 238 NLNNVIELSKEFIYSPDMGIEVEKHIGAHYYTIGQRKGLNIGGRPNPSFVIGIDTTTNTV 297 Query: 291 IVG-----PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND 345 G P + +I E++W+ + FE + D + ++IR Q + R Sbjct: 298 YSGQKDEHPGLNKWALKIETSEMHWI-NPTFEMNIGDSKEFDIRIRYRQSFQKGTLTRLQ 356 Query: 346 DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 DG Y+ F + + G+ GQ FY NE ++G GIIS Sbjct: 357 DGFYILFNQKQRGITPGQFAAFY----NEDELIGSGIIS 391 >gi|326561491|gb|EGE11835.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis 46P47B1] gi|326566712|gb|EGE16851.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis 103P14B1] gi|326571429|gb|EGE21444.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis BC7] gi|326576626|gb|EGE26533.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis 101P30B1] Length = 392 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 208/389 (53%), Gaps = 34/389 (8%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K PKD++V+V MSGGVDSSV A LL++ G+ V G+ ++ + S+ C A D+ D Sbjct: 15 KAPKDIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSEY---CTAMTDLAD 71 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ V D I + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 72 AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131 Query: 136 ----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R DGK + + R +D +DQSYFL A ++ FP Sbjct: 132 PQFGLGADFIATGHYARRGF--SQDGKAQ--LLRGLDANKDQSYFLHAVGGDKIAKTLFP 187 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 +G+++K VR +A++ L A+K DS ICF+ + K+ D +++ A +GDI +G Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 +G H+G++ YTIGQR G+G+ EP FV++ D ++R+IVG L+ + Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSDEL 305 Query: 304 YLREINWLGDGLFEDAVV---DGFKCFVKIR---SSQDPVPVFVQRNDDGVYVDFEKSEV 357 +++W G+ A + GF+C K R S QD + D V V F+ ++ Sbjct: 306 TAYKLDW---GIAPPAQIFGKQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFDDAQR 362 Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGS 386 V GQ+ VFY D LGGG+I G+ Sbjct: 363 AVTQGQSVVFYDGDI----CLGGGVIDGT 387 >gi|53804157|ref|YP_114223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylococcus capsulatus str. Bath] gi|81681831|sp|Q607H5|MNMA_METCA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|53757918|gb|AAU92209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylococcus capsulatus str. Bath] Length = 371 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 138/390 (35%), Positives = 203/390 (52%), Gaps = 41/390 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VVV MSGGVDSSV A LL R GY V G+ ++ + ++ C A QD DA++VC+ Sbjct: 4 HVVVGMSGGVDSSVTALLLLRQGYRVSGLFMKNWEEDDGTE---YCTAAQDFADAKQVCE 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + V + ++ + + V F S Y AG TP P + CN+ +KF L LGAD++ Sbjct: 61 RLGVELHTVNFAAEYWDEVFEVFLSEYRAGRTPNPDILCNKQIKFRAFLDYAEDLGADLI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 A GHY R V ++ R +++ + D +DQSYFL+ Q+QL FPLG ++K VR Sbjct: 121 AMGHYAR----VAEEEGRLQLL-KGCDPGKDQSYFLYTLQQEQLARTLFPLGGLRKTEVR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA G K DS ICF+ + ++ D + R A GDI G +LGRH+G++ Sbjct: 176 ALAAGAGFANDAKKDSTGICFIGERRFKDFLARYLP--ARPGDIRTPEGVLLGRHDGLMY 233 Query: 262 YTIGQRRGLGV----AMG-EPLFVVYLDKNSSR--VIVGPRESLEVHRIYLRE------I 308 YT+GQR GLG+ A G EP +V LDK+ +R ++VG H + R+ + Sbjct: 234 YTLGQRSGLGIGGTRAGGQEPWYV--LDKDLARNVLVVGQGHD---HPLLYRDGLLASRL 288 Query: 309 NWL-GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366 +W+ G G ++ +C K R Q ++ +D + V F + + V GQ+ V Sbjct: 289 HWVDGAGPAPGEIL---RCAAKTRYRQSDQDCRIRLIGEDRLEVVFAQPQRAVTPGQSVV 345 Query: 367 FYTSDSNEARVLGGGII----SGSKRSDAV 392 FY D LGGG+I + R+DA Sbjct: 346 FYQDDC----CLGGGVIDLTFNADSRADAA 371 >gi|32490853|ref|NP_871107.1| hypothetical protein WGLp104 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|30173418|sp|Q8D397|MNMA_WIGBR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|25166059|dbj|BAC24250.1| ycfB [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 368 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 130/379 (34%), Positives = 193/379 (50%), Gaps = 28/379 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +V++A+SGGVDSSV A LK+ GY V GV ++ + +S + C +D+ DA+ Sbjct: 3 KKKKVIIAISGGVDSSVSAWFLKKSGYHVEGVFMKNWEEINSSIK---CTFKKDLKDAQI 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLG 137 VCD I ++ + ++ E++ N V F Y G TP P + CN+ +KF L+ +++ Sbjct: 60 VCDQIGININIVNFSEQYWNKVFKIFLREYKIGNTPNPDILCNKEIKFKYFLNFAIKEMQ 119 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY+R + +GK + + DL++DQSYFL ++L FP+G++ K Sbjct: 120 ADYIATGHYVRK---INFNGKSQ--LFSAFDLKKDQSYFLHQINYKELSKCIFPIGNILK 174 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR +A ++ L + K DS ICF+ + +K N G I + +G H Sbjct: 175 SKVRYIASKLNLITSKKRDSTGICFIGNKNFNKFIK--NYLHDDPGLIFSTEKKQIGTHK 232 Query: 258 GIINYTIGQRRGLGVAM-----GEPLFVV--YLDKNSSRVIVGPRES-LEVHRIYLREIN 309 G++ YTIGQR+GL + +P +VV +DKN V G L I + E N Sbjct: 233 GLMYYTIGQRKGLNIKKIYYNCHDPWYVVDKKIDKNYLIVSQGKNNPYLMSTSIIIIETN 292 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368 W+ ++ + KC VK R Q+ V D + V F K VA GQ VFY Sbjct: 293 WIDQIYLKNPI----KCMVKTRYRQNSTLCLVIPIDKKSIEVIFYKPISSVAPGQYAVFY 348 Query: 369 TSDSNEARVLGGGIISGSK 387 D R LGGGII K Sbjct: 349 LLD----RCLGGGIIKSRK 363 >gi|303260932|ref|ZP_07346881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP14-BS292] gi|303269624|ref|ZP_07355383.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae BS458] gi|301801084|emb|CBW33752.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae INV200] gi|302637769|gb|EFL68255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP14-BS292] gi|302640826|gb|EFL71214.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae BS458] gi|332077431|gb|EGI87892.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae GA41301] Length = 373 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 138/379 (36%), Positives = 199/379 (52%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +R+ +DG M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHY--ARVVRDEDGTVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G++ Sbjct: 181 KLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ P FVV D + + + VG +SL + ++++ D Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ C K R Q V V D V F + + + GQA VFY + Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE-- 352 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I + R V Sbjct: 353 --ECLGGGLIDNAYRDGQV 369 >gi|289523006|ref|ZP_06439860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503549|gb|EFD24713.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 351 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 130/378 (34%), Positives = 200/378 (52%), Gaps = 37/378 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +R++ A+SGG+DSS+ +LL + G++V+G L + + + +DV AR+VC Sbjct: 5 LRIITAISGGIDSSLALSLLAKQGHEVVGCFLVMSDGHE-----------EDVDRARKVC 53 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + V Y D E+F++ VI+P +SY+ G+TP PCV CN VKF L + +D Sbjct: 54 ELLKVPFYAIDIREKFQSEVIMPLITSYSNGKTPNPCVFCNPNVKFKTLFDLLNCYNSDF 113 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY +++Y D + R D +++QSY L+ + L + FPLGD+ K V Sbjct: 114 VATGHY--AKIYKDDLNYH---LVRGRDPKKEQSYMLYRLPKNWLSSVIFPLGDLTKAEV 168 Query: 201 RDLAREMGLDIADK-SDSQDICFVQQGKYFD--VVKRINAGIALEGDIVHLNGQILGRHN 257 + ARE+ +I D +S D+CF+++ + + RI+ EG I+ L G+ LG H Sbjct: 169 KKKAREIFGNIFDDVEESADLCFLRRDETLRDFLSSRIDVK---EGPILSLQGEFLGSHR 225 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI YT+GQR GLG+ G P +V ++ + + +IVG +E L+ I +WL Sbjct: 226 GIGYYTVGQREGLGLPNG-PWYVSEINASENALIVGRKEDLQRRFIKCYSPHWL------ 278 Query: 318 DAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVD-FEKSEVGVASGQACVFYTSDSNEA 375 + G + R P PV ++G V E GVA GQ+ V Y Sbjct: 279 EGPEVGKVYSAQHRYKATPKPVALTDSGEEGFTVKALESPFWGVAPGQSLVLYDGRV--- 335 Query: 376 RVLGGGIISGSKRSDAVE 393 V+GGGII+G SDA E Sbjct: 336 -VVGGGIIAGC--SDAKE 350 >gi|254253215|ref|ZP_04946533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia dolosa AUO158] gi|124895824|gb|EAY69704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia dolosa AUO158] Length = 382 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 180/371 (48%), Gaps = 27/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L LGA+ + Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + D + R G + +G+++G H G+ Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKLVGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGD 313 YT GQR+G+G+ GEP FV D N+ V+ G + R + ++W+ Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRQLVAGNVSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + +G C K R Q D F + + F+ ++ V GQ+ V Y D Sbjct: 295 ----EPPAEGHACGAKTRYRQADAACTFAGAGGERFSLAFDDAQWAVTPGQSAVLYDGDV 350 Query: 373 NEARVLGGGII 383 LGGGII Sbjct: 351 ----CLGGGII 357 >gi|293364413|ref|ZP_06611139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus oralis ATCC 35037] gi|291317259|gb|EFE57686.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus oralis ATCC 35037] Length = 415 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 141/389 (36%), Positives = 200/389 (51%), Gaps = 26/389 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L + N K RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A + Sbjct: 41 LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 96 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D D V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 97 DYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 156 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FP Sbjct: 157 YAMTLGADYIATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 212 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E GL A K DS ICF+ + + + + N A G ++ ++G+ Sbjct: 213 LGHLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGR 270 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 +G H G++ YTIGQR GLG+ P FVV D + + + VG +SL + Sbjct: 271 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSQNILYVGQGFYHDSLMSTSL 330 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 ++++ D + E+ ++ C K R Q V V D V F + + + GQ Sbjct: 331 EASQVHFTRD-MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQ 386 Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAV 392 A VFY + LGGG+I + R V Sbjct: 387 AVVFYDGE----ECLGGGLIDNAYRDGQV 411 >gi|261867343|ref|YP_003255265.1| tRNA-specific 2-thiouridylase MnmA [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412675|gb|ACX82046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 383 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 129/387 (33%), Positives = 214/387 (55%), Gaps = 29/387 (7%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +L + L +N +++ MSGGVDSSV A +L++ GY V G+ ++ + + C Sbjct: 12 KLTAQQLAENATK-KIICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 67 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 A D+ DA+ VCD + + + ++ + + V F S Y AG TP P + CN+ +KF Sbjct: 68 TAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFK 127 Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L + LGA+ +ATGHY+R R DD + + R +D +DQSYFL+ ++ Q+ Sbjct: 128 AFLEYAAEDLGANYIATGHYVRRR--GADDNAQ---LLRGLDNNKDQSYFLYTLSKTQVG 182 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 FP+G+++K VR +A E+GL A K DS ICF+ + K+ D + R A G+I Sbjct: 183 QSLFPVGNIEKPIVRAIAEELGLVTAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIR 240 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESL 298 ++G+I+GRH+G++ +T+GQR+GLG+ A + +VV D ++ +IV +L Sbjct: 241 TVDGEIIGRHDGLMYHTLGQRKGLGIGGVKGAGEDAWYVVEKDLINNELIVAQGHDHSAL 300 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + ++++W+ D L + +C VK R Q VP ++ +D+ + V F++ ++ Sbjct: 301 LSTGLIAQQLHWV-DCL---PIRAPLRCTVKTRYRQTDVPCIIEPIDDETIKVIFDEPQI 356 Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGGII Sbjct: 357 AVTPGQSAVFYLDEI----CLGGGIIE 379 >gi|207721599|ref|YP_002252038.1| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase protein [Ralstonia solanacearum MolK2] gi|206586760|emb|CAQ17345.1| probable trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase protein [Ralstonia solanacearum MolK2] Length = 370 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 129/371 (34%), Positives = 183/371 (49%), Gaps = 27/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDSSV A LLK+ GY+V+G+ ++ + S+ C QD D V D Sbjct: 5 RVVVGLSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I V ++ +++ V F Y+AG TP P V CN +KF L LGAD + Sbjct: 62 LIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGADTI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVREVDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKTRVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A E+GL A K DS ICF+ + + D + R G I G+ +G+H G+ Sbjct: 177 EIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPIKTPEGKTIGQHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313 YT+GQR+G+G+ G+ +V D N+ V+ G L H ++ +++W+ Sbjct: 235 YTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 +G K R Q P V DG + + F +++ V GQ+ V Y D Sbjct: 295 ----HPPAEGTHLAAKTRYRQADAPCTVAGATDGALALAFSEAQWAVTPGQSAVLYDGDV 350 Query: 373 NEARVLGGGII 383 LGGGII Sbjct: 351 ----CLGGGII 357 >gi|225012689|ref|ZP_03703124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Flavobacteria bacterium MS024-2A] gi|225003222|gb|EEG41197.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Flavobacteria bacterium MS024-2A] Length = 394 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 122/397 (30%), Positives = 200/397 (50%), Gaps = 41/397 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R++V +SGGVDSSV A LLK++GY+VIG+ ++ ++ + C +D DA V + Sbjct: 5 RIIVGLSGGVDSSVAAYLLKKEGYEVIGLFMKNWHDETVT-LSNECPWLEDSNDAMLVAE 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + D + ++ ++ Y+ G TP P V CNR +KF L + LGAD + Sbjct: 64 KLGIPFQTVDLSKEYKERIVDYMFDEYSKGRTPNPDVLCNREIKFDVFLEIALSLGADYV 123 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + + G + D +DQSYFL Q+QL + FP+G ++KE VR Sbjct: 124 ATGHYCQKTFFATPSGDHIHQLKSGADNNKDQSYFLCQLNQKQLSHVLFPIGHLQKEEVR 183 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKR-----------------INAGIAL-EG 243 +A E L ADK DSQ +CF+ + + D +++ + AG Sbjct: 184 KIALEQDLVTADKKDSQGLCFIGKVRLPDFLQQQLKSKKGSIIEISTDFSVYAGSETSHK 243 Query: 244 DIVH---------LNGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVG 293 D+++ +G I+G HNG YT+GQR+GLGV EPLFV+ + + + + VG Sbjct: 244 DLINRAKKVRYQPTDGAIVGEHNGAHFYTVGQRKGLGVGGNVEPLFVIDTNVDDNTIYVG 303 Query: 294 P-RESLEVHRIYL----REINWL-GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG 347 +E ++R L +I+W+ GD + ++ R + +F + + Sbjct: 304 QGKEHPGLYRYALAVAQEDIHWVRGDLALRPGETLSIQARIRYRQALQKATLF--QTESA 361 Query: 348 VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 +YV F++ + + SGQ +Y +E +LG G+I+ Sbjct: 362 LYVSFDEPQSAITSGQFVAWY----HEKELLGSGVIT 394 >gi|118474553|ref|YP_892616.1| tRNA-specific 2-thiouridylase MnmA [Campylobacter fetus subsp. fetus 82-40] gi|261886048|ref|ZP_06010087.1| tRNA-specific 2-thiouridylase MnmA [Campylobacter fetus subsp. venerealis str. Azul-94] gi|205811604|sp|A0RQY3|MNMA_CAMFF RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|118413779|gb|ABK82199.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter fetus subsp. fetus 82-40] Length = 338 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 118/366 (32%), Positives = 189/366 (51%), Gaps = 32/366 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+V+VA+SGGVDSS+ A L GY V+G ++L++ + +++ ++V Sbjct: 1 MKVLVALSGGVDSSMSAKYLLEAGYSVVGCYMKLHSKPGYHE--------ENIRKVKKVG 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + ++ D EE F V PF ++Y G TP PC CN+ +KF L + LG D Sbjct: 53 EFLGIETHILDLEEEFNAKVYEPFVNAYKEGLTPNPCAHCNKNIKFGALWKFAQTLGCDK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R +DG ++ DL +DQSYFL + + L + FPLGD K + Sbjct: 113 MATGHYARI-----EDG----LIKVASDLSKDQSYFLANISPEILPYIIFPLGDKFKVDI 163 Query: 201 R--DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 + ++A + +S +ICFV+ Y D++ + + + G + ++G+++G+H+G Sbjct: 164 KAAAAQIPQIAELASQKESSEICFVET-TYIDILNK-HFNTLMPGVVRDVSGKVVGKHDG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 + YTIG+R+G V P +V+ +D + ++VG ++ L N D Sbjct: 222 YMRYTIGKRKGFSVDGAHSPHYVLKIDAAKNEIVVGLKDELSSFSFTTTNFNNFTDK--- 278 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + +CFVKIR P+P V + DDG V + + GVASGQ VFY RV Sbjct: 279 ----NELECFVKIRYRSTPIPCLVSKLDDGATVKLKDNAGGVASGQLAVFYDEFD---RV 331 Query: 378 LGGGII 383 L G I Sbjct: 332 LASGFI 337 >gi|332040942|gb|EGI77312.1| tRNA-specific 2-thiouridylase MnmA [Hylemonella gracilis ATCC 19624] Length = 386 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 126/396 (31%), Positives = 195/396 (49%), Gaps = 39/396 (9%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 +DK+ + RVVV +SGGVDS+V A LLK+ G+DV+G+ ++ + ++ C + D Sbjct: 1 MDKSNRGQRVVVGLSGGVDSAVTAYLLKKQGHDVVGIFMKNWEDDDDNE---YCSSNVDF 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA V D I + ++ +++ V F Y AG TP P V CN +KF L Sbjct: 58 VDAAAVADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +LGA+ +ATGHY R RL ++ + + + +D +DQSYFL Q QL FP+G Sbjct: 118 MRLGAEKIATGHYARVRL---NEKTGKHELLKGLDPSKDQSYFLHRLNQAQLSKTLFPVG 174 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR--------INAGIALEG-- 243 ++ K VR +A E+GL A K DS ICF+ + + + + R I G L G Sbjct: 175 ELHKTEVRRIAAEIGLPNAKKKDSTGICFIGERPFREFLNRYIQKEPGPIKDGTPLPGSP 234 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGV------------AMGEPLFVVY--LDKNSSR 289 D +G+++G+H G+ YT+GQR+GLG+ EP FV +DKN Sbjct: 235 DYERAHGRVIGKHVGLSFYTLGQRQGLGIGGIKDKGAQKGGGEHEPWFVARKDMDKNQLW 294 Query: 290 VIVGPRES-LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV 348 V+ G L+ H ++ + +W+ E + + R + D D G Sbjct: 295 VVQGHDHPLLQSHGLHALDASWIAG---EPPLPGDLHAKARYRQA-DAACTLDHVEDSGF 350 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + F +++ V GQ+ V Y + LGGGI+ Sbjct: 351 SLRFPEAQWAVTPGQSAVLYDGEV----CLGGGIVQ 382 >gi|116516757|ref|YP_815643.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae D39] gi|30173410|sp|Q8CWW0|MNMA_STRR6 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|122279467|sp|Q04MV1|MNMA_STRP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|116077333|gb|ABJ55053.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae D39] Length = 373 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 141/385 (36%), Positives = 195/385 (50%), Gaps = 37/385 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG +KK VR Sbjct: 125 ATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLKKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G++ Sbjct: 181 KLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYL-RE 307 YTIGQR GLG+ P FVV D + + + VG SLE +++ RE Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRE 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 + E+ ++ C K R Q V V D V F + + + GQA VF Sbjct: 299 MP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVF 348 Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392 Y + LGGG+I + R V Sbjct: 349 YDGE----ECLGGGLIDNAYRDGQV 369 >gi|270291927|ref|ZP_06198142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sp. M143] gi|270279455|gb|EFA25297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sp. M143] Length = 383 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 143/395 (36%), Positives = 199/395 (50%), Gaps = 38/395 (9%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L + N K RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A + Sbjct: 9 LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 64 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D D V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 65 DYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 124 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FP Sbjct: 125 YAMTLGADYVATGHYAR----VARDEDGIVHMLRGVDTGKDQTYFLSQLSQEQLQKTMFP 180 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E GL A K DS ICF+ + + + + N A G ++ ++G+ Sbjct: 181 LGHLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKEFLS--NYLPAQPGRMMTMDGR 238 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESL 298 +G H G++ YTIGQR GLG+ P FVV D + + + VG SL Sbjct: 239 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSQNILYVGQGFYHDSLMSTSL 298 Query: 299 EVHRIYL-REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV 357 E +++ RE+ E+ ++ C K R Q V V D V F + + Sbjct: 299 EASQVHFTREMP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQR 348 Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGSKRSDAV 392 + GQA VFY + LGGG+I + R V Sbjct: 349 AITPGQAVVFYDGE----ECLGGGLIDNAYRDGQV 379 >gi|167553799|ref|ZP_02347544.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205321840|gb|EDZ09679.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 368 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 129/381 (33%), Positives = 208/381 (54%), Gaps = 30/381 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + ++PK +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ Sbjct: 1 MSESPK--KVIVGMSGGVDSSVSAWLLQQLGYQVEGLFMKNWEEDDGEEY---CTAAADL 55 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 56 ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + LGAD +ATGHY+R R V +GK R + R +D +DQSYFL+ +Q+ FP+ Sbjct: 116 AEDLGADYIATGHYVR-RADV--NGKSR--LLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR +A ++GL A K DS ICF+ + K+ D + R A G I+ ++G Sbjct: 171 GELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDE 228 Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL- 305 +G H G++ +T+GQR+GLG+ +P +VV D +N+ ++ E + + L Sbjct: 229 IGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGHEHPRLMSVGLI 288 Query: 306 -REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363 ++++W+ F + +C VK R Q +P + +DD + V F++ V GQ Sbjct: 289 AQQLHWVDREPFTGTL----RCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQ 344 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY+ + LGGGII Sbjct: 345 SAVFYSGEV----CLGGGIIE 361 >gi|227498170|ref|ZP_03928341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinomyces urogenitalis DSM 15434] gi|226832420|gb|EEH64803.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinomyces urogenitalis DSM 15434] Length = 399 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 124/305 (40%), Positives = 166/305 (54%), Gaps = 17/305 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ A+SGGVDS+V AA G++V+GV + L R A R GS CC+ +D DAR Sbjct: 1 MRVLAALSGGVDSAVAAARAVEAGHEVVGVHMALTRHR-AQTRSGSRGCCSIEDSADARW 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + YV+D E F + V+ F S Y AG TP PCV CN VKF LL +G Sbjct: 60 AAEILGIPFYVWDLSEEFEDRVVADFLSEYRAGRTPNPCVRCNERVKFDALLERGLAMGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRR-----IMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 D +ATGHY +RL G R + R D +DQSY L + ++ L FPLG Sbjct: 120 DAVATGHY--ARLTGGASSGRPGDTHDLCLSRAADAAKDQSYVLAVSGREGLSRALFPLG 177 Query: 194 DMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 D K +VR A E GL +ADK DS DICFV G ++R EG +V +G++ Sbjct: 178 DAPSKAAVRAEAAERGLPVADKPDSYDICFVADGDTRGFLQRSLG--TQEGTLVSPDGEV 235 Query: 253 LGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 LG H G +T+GQR+GLG+ G+P +V+ ++ V+VGPRE L H I + Sbjct: 236 LGTHEGYFGFTVGQRKGLGLTRPAPDGQPRYVIATRPATNEVVVGPRELLSRHEIEADAL 295 Query: 309 NWLGD 313 L D Sbjct: 296 VLLAD 300 >gi|71274784|ref|ZP_00651072.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xylella fastidiosa Dixon] gi|71901076|ref|ZP_00683185.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xylella fastidiosa Ann-1] gi|170729970|ref|YP_001775403.1| tRNA-specific 2-thiouridylase MnmA [Xylella fastidiosa M12] gi|205828985|sp|B0U6Q7|MNMA_XYLFM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71164516|gb|EAO14230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xylella fastidiosa Dixon] gi|71729158|gb|EAO31280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xylella fastidiosa Ann-1] gi|167964763|gb|ACA11773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xylella fastidiosa M12] Length = 379 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 126/375 (33%), Positives = 188/375 (50%), Gaps = 30/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R++VAMSGGVDSSV A L + G+ ++ + G C A +D DA VC Sbjct: 5 RIIVAMSGGVDSSVAAWRLNSQREAIAGLFMRNWTD----DGNGQCHAEEDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + ++ + D+ + V F + YA G TP P V CNR +KF L R+LGAD + Sbjct: 61 ILGIAFHFRDFSHEYWQEVFTHFLAEYANGRTPNPDVLCNREIKFKHFLETARELGADRI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R Y ++R + R D +DQSYFL Q+QL FP+GD++K+ +R Sbjct: 121 ATGHYARIEHY-----RQRWHLLRGADRSKDQSYFLHQLGQEQLAATLFPIGDLEKQQLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA + GL K DS ICF+ + + + +K+ A G+I Q + H G+ Sbjct: 176 QLAHQTGLPTHAKKDSTGICFIGERNFREFLKQYLP--AQPGEIRDPQEQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RESLEVHRIYLRE--INWLGD 313 +T+GQR+GL + P +V+ D ++ + V R+S + +LR +W+ Sbjct: 234 FTLGQRQGLNIGGVRNRPPSPWYVIGKDLATNVLYVDQHRDSPFLQSRWLRSEPAHWVSG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 F C + R Q +P V V RND + VDF +++ V GQ+ V Y D Sbjct: 294 ----SPPAHTFTCTAQTRYRQADEPCKVTV-RNDGSLDVDFTRTQWAVTPGQSLVLY--D 346 Query: 372 SNEARVLGGGIISGS 386 NE LGG +I+ + Sbjct: 347 GNE--CLGGAVIATT 359 >gi|326561065|gb|EGE11430.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis 7169] Length = 392 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 138/389 (35%), Positives = 209/389 (53%), Gaps = 34/389 (8%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K PKD++V+V MSGGVDSSV A LL++ G+ V G+ ++ + S+ C A D+ D Sbjct: 15 KAPKDIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSEY---CTAMTDLAD 71 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-- 133 A+ V D I + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 72 AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131 Query: 134 RQ--LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 RQ LGAD +ATGHY R DGK + + R +D +DQSYFL A ++ FP Sbjct: 132 RQFGLGADFIATGHYARRGF--SQDGKAQ--LLRGLDANKDQSYFLHAVGGDKIAKTLFP 187 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 +G+++K VR +A++ L A+K DS ICF+ + K+ D +++ A +GDI +G Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 +G H+G++ YTIGQR G+G+ EP FV++ D ++R+IVG L+ + Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSTEL 305 Query: 304 YLREINWLGDGLFEDAVV---DGFKCFVKIR---SSQDPVPVFVQRNDDGVYVDFEKSEV 357 +++W G+ A + GF+C K R S QD + D V V F ++ Sbjct: 306 TAYKLDW---GIAPPAQIFGKQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFGDAQR 362 Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGS 386 V GQ+ VFY D LGGG+I G+ Sbjct: 363 AVTQGQSVVFYDGDI----CLGGGVIDGT 387 >gi|323172490|gb|EFZ58127.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli LT-68] gi|323947563|gb|EGB43567.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli H120] Length = 357 Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 129/368 (35%), Positives = 201/368 (54%), Gaps = 28/368 (7%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD + + Sbjct: 1 MSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCDKLGIE 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGH 145 + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD +ATGH Sbjct: 58 LHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGH 117 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y+R R V DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K VR +A Sbjct: 118 YVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAE 172 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G++ +T+G Sbjct: 173 DLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLMYHTLG 230 Query: 266 QRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLGDGLFE 317 QR+GLG+ EP +VV D +N+ V+ E + + L ++++W+ F Sbjct: 231 QRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVDREPFT 290 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY N Sbjct: 291 GTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY----NGEV 342 Query: 377 VLGGGIIS 384 LGGGII Sbjct: 343 CLGGGIIE 350 >gi|315221594|ref|ZP_07863514.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus anginosus F0211] gi|315189428|gb|EFU23123.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus anginosus F0211] Length = 373 Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 201/389 (51%), Gaps = 37/389 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R++ +DG M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYARAKR--DEDGIVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKSEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G++ Sbjct: 181 AIAEKAGLATAKKKDSTGICFIGEKNFKEFLG--NYLPAQPGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYL-RE 307 YTIGQR GLG+ EP FVV D + + + VG SL+ +++ RE Sbjct: 239 YTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHFTRE 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 I +C K R Q V V D V+F + + + GQA VF Sbjct: 299 I----------PAEFTMECTAKFRYRQPDSKVTVTVKGDKAIVNFAEPQRAITPGQAVVF 348 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396 Y +E LGGG+I + + +++ + Sbjct: 349 Y----DEEECLGGGLIDNAYKDGKLQQYI 373 >gi|254785838|ref|YP_003073267.1| tRNA U34 sulfurtransferase [Teredinibacter turnerae T7901] gi|237686421|gb|ACR13685.1| tRNA U34 sulfurtransferase [Teredinibacter turnerae T7901] Length = 367 Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 125/377 (33%), Positives = 194/377 (51%), Gaps = 28/377 (7%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K +V+V MSGGVDSSV A LL + GY V G+ ++ +N ++ C A D+ D Sbjct: 5 KPASQTKVIVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWNEDDGTEY---CTAMTDLLD 61 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A VC + + + ++ ++ + V F Y AG TP P + CNR +KF L Q Sbjct: 62 AANVCQKLGIPLHTANFATQYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKVFLDYAEQ 121 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGA+ +ATGHY R+R G + +C+ +D +DQSYFL A ++ FP+G++ Sbjct: 122 LGANYIATGHYARTRNKAG-----QTQLCKGLDGNKDQSYFLHAVEEKAFAKTLFPIGEL 176 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR+LA L +K DS ICF+ + ++ D ++ A G IV G+ILG Sbjct: 177 EKPRVRELAEAHDLVTHNKKDSTGICFIGERRFKDFLQTYLP--AQPGKIVTPEGEILGD 234 Query: 256 HNGIINYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307 H G++ YTIGQR+GLG+ + +V + + + +IV G E L + Sbjct: 235 HQGLMYYTIGQRQGLGIGGIAGAHEDAWYVARKNLSDNTLIVVQGGSHELLLETALVANG 294 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366 ++W+ E GF+C+ K R Q +Q+ + D + V F++ + + GQ+ V Sbjct: 295 MHWINQPQEE-----GFRCYAKTRYRQPDQRCTLQKVSGDTITVVFDEPQRAITPGQSIV 349 Query: 367 FYTSDSNEARVLGGGII 383 Y D LGGG+I Sbjct: 350 LYDGDV----CLGGGVI 362 >gi|76788488|ref|YP_330692.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae A909] gi|123601021|sp|Q3JYG1|MNMA_STRA1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|76563545|gb|ABA46129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae A909] Length = 373 Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 141/383 (36%), Positives = 199/383 (51%), Gaps = 29/383 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 ++RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V Sbjct: 6 NIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 63 ADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K Sbjct: 123 YVATGHYAQ----VTRDENGIVHMLRGADNNKDQTYFLSQLSQEQLQKTLFPLGHLQKPE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E GL A K DS ICF+ + + D + + A G ++ ++G+ +G H G+ Sbjct: 179 VRRIAEEAGLATAKKKDSTGICFIGEKNFKDFLGQYLP--AQPGRMMTVDGRDMGEHAGL 236 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + YTIGQR GLG+ +P FVV D + + + VG +SL + EI++ Sbjct: 237 MYYTIGQRGGLGIGGQHGGDNKPWFVVGKDLSKNILYVGQGFYHDSLMSTSLTASEIHFT 296 Query: 312 GDGLFEDAVVDGFK--CFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 D + + FK C K R Q V V + V F+ + + GQA VFY Sbjct: 297 RD------MPNEFKLECTAKFRYRQPDSKVKVYVKGNQARVVFDDLQRAITPGQAVVFY- 349 Query: 370 SDSNEARVLGGGIISGSKRSDAV 392 NE LGGG+I + R D + Sbjct: 350 ---NEQECLGGGMIDQAYRDDKI 369 >gi|28198570|ref|NP_778884.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xylella fastidiosa Temecula1] gi|182681251|ref|YP_001829411.1| tRNA-specific 2-thiouridylase MnmA [Xylella fastidiosa M23] gi|32130276|sp|Q87DM0|MNMA_XYLFT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205828984|sp|B2I9X8|MNMA_XYLF2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|28056654|gb|AAO28533.1| tRNA methyltransferase [Xylella fastidiosa Temecula1] gi|182631361|gb|ACB92137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xylella fastidiosa M23] gi|307579701|gb|ADN63670.1| tRNA-specific 2-thiouridylase MnmA [Xylella fastidiosa subsp. fastidiosa GB514] Length = 379 Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 126/375 (33%), Positives = 188/375 (50%), Gaps = 30/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R++VAMSGGVDSSV A L + G+ ++ + G C A +D DA VC Sbjct: 5 RIIVAMSGGVDSSVAAWRLNSQREAIAGLFMRNWTD----DGNGQCHAEEDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + ++ + D+ + V F + YA G TP P V CNR +KF L R+LGAD + Sbjct: 61 ILGIAFHFRDFSHEYWQEVFTHFLAEYANGRTPNPDVLCNREIKFKHFLETARELGADRI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R Y ++R + R D +DQSYFL Q+QL FP+GD++K+ +R Sbjct: 121 ATGHYARIEHY-----RQRWHLLRGADRSKDQSYFLHQLGQEQLAATLFPIGDLEKQQLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA + GL K DS ICF+ + + + +K+ A G+I Q + H G+ Sbjct: 176 QLAHQTGLPTHAKKDSTGICFIGERNFREFLKQYLP--AQPGEIRDPQEQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RESLEVHRIYLRE--INWLGD 313 +T+GQR+GL + P +V+ D ++ + V R+S + +LR +W+ Sbjct: 234 FTLGQRQGLNIGGVRNRPPSPWYVIGKDLATNVLYVDQHRDSPFLQSRWLRSEPAHWVSG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 F C + R Q +P V V RND + VDF +++ V GQ+ V Y D Sbjct: 294 ----SPPAPTFTCTAQTRYRQADEPCKVTV-RNDGSLDVDFTRTQWAVTPGQSLVLY--D 346 Query: 372 SNEARVLGGGIISGS 386 NE LGG +I+ + Sbjct: 347 GNE--CLGGAVIATT 359 >gi|311279962|ref|YP_003942193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterobacter cloacae SCF1] gi|308749157|gb|ADO48909.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterobacter cloacae SCF1] Length = 369 Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 125/375 (33%), Positives = 197/375 (52%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 125 IATGHYVRRA-----DVNGKSQLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+ L A K DS ICF+ + K+ D + R A G I+ ++G +G H G++ Sbjct: 180 RKIAEELELITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDEIGEHQGLM 237 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ +P +VV D ++ ++V PR L + ++++W Sbjct: 238 YHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNILVVAQGHDHPR--LMSVGLIAQQLHW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + + V +C VK R Q +P V DD + V F++ V GQ+ VFY Sbjct: 296 VD----REPVTGTLRCTVKTRYRQTDIPCTVTAQDDSRIEVRFDEPVAAVTPGQSAVFYL 351 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 GEV----CLGGGIIE 362 >gi|224436863|ref|ZP_03657852.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter cinaedi CCUG 18818] gi|313143341|ref|ZP_07805534.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter cinaedi CCUG 18818] gi|313128372|gb|EFR45989.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter cinaedi CCUG 18818] Length = 346 Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 124/367 (33%), Positives = 191/367 (52%), Gaps = 30/367 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V + MSGGVDSS A LL GY+VIG+ L+L++ K K C +V Sbjct: 3 KVALLMSGGVDSSYCAHLLLSQGYEVIGLYLKLHDKEKKHKIYIKNC--------EQVAS 54 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + V D E F+ V F SY AG+TP PC CN +KF L +LG D + Sbjct: 55 QLGIRFEVLDLREEFKKNVYDAFVKSYKAGQTPNPCAVCNPLMKFGLGLQKADELGCDFI 114 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + + +G +R + + +D +DQSYFL+A Q + + FPLG KE V+ Sbjct: 115 ATGHYAQIKEI---NGIKR--IAKALDDTKDQSYFLYALPQSAIDRIIFPLGTFTKEEVK 169 Query: 202 DLAREMGL---DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 A ++ + +SQ+ICFV+ Y D++K ++ + +EG + NG+ +G H G Sbjct: 170 KTALKLLPFLGTLETYKESQEICFVEDS-YIDILK-LHEKVDMEGIVRDSNGKAVGTHKG 227 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+R+G V EP +V ++ + +IVG +E L + I + +N F+ Sbjct: 228 YMHYTIGKRKGFSVFGSHEPHYVKAINPQKNEIIVGTKEELTIDSI--QALNKSLPQAFD 285 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 V D +K+R +P+ + + ++ +S GVA GQA V Y D V Sbjct: 286 GGVYD-----IKVRYRSEPLKAEINIQGEYIHAKLLESAYGVAQGQALVLYQDDC----V 336 Query: 378 LGGGIIS 384 LGGG+I+ Sbjct: 337 LGGGVIT 343 >gi|152969695|ref|YP_001334804.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954544|gb|ABR76574.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 388 Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 130/391 (33%), Positives = 208/391 (53%), Gaps = 32/391 (8%) Query: 6 ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65 A++ N + + +V+V MSGGVDSSV A LL + GY V G+ ++ + + Sbjct: 11 ASKFNVASISMSESQKKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEEY-- 68 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +K Sbjct: 69 -CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIK 127 Query: 126 FSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 F L + LGAD +ATGHY+R R V DGK + + R +D +DQSYFL+ + +Q Sbjct: 128 FKAFLEFAAEDLGADYIATGHYVR-RADV--DGKSQ--LLRGLDGNKDQSYFLYTLSHEQ 182 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 + FP+G+++K VR +A E+ L A K DS ICF+ + K+ D + R A G Sbjct: 183 IAQSLFPVGELEKPQVRKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGK 240 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----P 294 I+ ++G+ +G H G++ +T+GQR+GLG+ +P +VV D ++ +IV P Sbjct: 241 ILTVDGEEIGTHQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGHDHP 300 Query: 295 RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFE 353 R L + ++++W+ + + +C VK R Q +P V ++D + V F+ Sbjct: 301 R--LMSVGLIAQQLHWVN----REPLQGTLRCTVKTRYRQTDIPCTVTALDEDRIEVRFD 354 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + V GQ+ VFY + LGGGII Sbjct: 355 EPVAAVTPGQSAVFYLGEV----CLGGGIIE 381 >gi|315179841|gb|ADT86755.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio furnissii NCTC 11218] Length = 372 Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 121/373 (32%), Positives = 197/373 (52%), Gaps = 26/373 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + + C A +D+ DA+ VCD Sbjct: 12 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 69 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R + G++ + M R +D +DQSYFL+ +Q+ FP+G+++K V Sbjct: 129 IAMGHYVRRTF--PEHGEKPQ-MLRGLDGNKDQSYFLYTLGHEQVARSLFPVGELEKPEV 185 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A K DS ICF+ + K+ D + R A G I G+++G H G++ Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 243 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +T+GQR+GL + +P +V D + +I L+ + + +++W+ Sbjct: 244 YHTLGQRKGLHIGGMKDGSEDPWYVAEKDLKRNVLIAVQGADHPLLKSNGLIASQLHWV- 302 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 D L + + +C VK R Q + V D+ + V F++ +V V GQ+ VFY + Sbjct: 303 DRL---PMTEPMRCTVKTRYRQTDIQCTVTPVDENTIKVMFDEPQVAVTPGQSAVFYQGE 359 Query: 372 SNEARVLGGGIIS 384 LGGGII Sbjct: 360 V----CLGGGIIE 368 >gi|59712391|ref|YP_205167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio fischeri ES114] gi|71658019|sp|Q5E3W7|MNMA_VIBF1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|59480492|gb|AAW86279.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio fischeri ES114] Length = 374 Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 117/377 (31%), Positives = 197/377 (52%), Gaps = 27/377 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + + C A +D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + L AD Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADF 124 Query: 141 LATGHYIRSRLYVGDDGKR--RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +A GHY+R ++ + M R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 125 IAMGHYVRRTFPTAEEIANGIKPQMLRGLDSNKDQSYFLYTLSSEQVARSLFPVGELEKP 184 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E GL A K DS ICF+ + K+ + + + A G+I G+++G+H G Sbjct: 185 EVRRIAEEQGLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGNIETPEGKVIGQHQG 242 Query: 259 IINYTIGQRRGLGVAMG-------EPLFVVYLD-KNSSRVIVGPRES--LEVHRIYLREI 308 ++ +T+GQR+GL + +P FV D K + + V ++ L+ + ++ Sbjct: 243 LMYHTLGQRKGLHIGGTKGGGGNEDPWFVGEKDLKRNVLIAVQGKDHPLLKSQGLLASQL 302 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVF 367 +W+ + C VK R Q +P + +D+ + V F++ ++ V GQ+ VF Sbjct: 303 HWVD----RTPIKAPLSCTVKTRYRQTDIPCTIIPVDDENIKVIFDEPQIAVTPGQSAVF 358 Query: 368 YTSDSNEARVLGGGIIS 384 Y + LGGGII Sbjct: 359 YLDEV----CLGGGIIE 371 >gi|197336343|ref|YP_002156606.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio fischeri MJ11] gi|229487426|sp|B5FG83|MNMA_VIBFM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|197317833|gb|ACH67280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio fischeri MJ11] Length = 374 Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 117/377 (31%), Positives = 197/377 (52%), Gaps = 27/377 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + + C A +D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + L AD Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADF 124 Query: 141 LATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +A GHY+R ++ + M R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 125 IAMGHYVRRTFPTAEEIANGVKPQMLRGLDSNKDQSYFLYTLSSEQVARSLFPVGELEKP 184 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E GL A K DS ICF+ + K+ + + + A G+I G+++G+H G Sbjct: 185 EVRRIAEEQGLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGNIETPEGKVIGQHQG 242 Query: 259 IINYTIGQRRGLGVAMG-------EPLFVVYLD-KNSSRVIVGPRES--LEVHRIYLREI 308 ++ +T+GQR+GL + +P FV D K + + V ++ L+ + ++ Sbjct: 243 LMYHTLGQRKGLHIGGTKGGGGNEDPWFVGEKDLKRNVLIAVQGKDHPLLKSQGLLASQL 302 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVF 367 +W+ + C VK R Q +P + +D+ + V F++ ++ V GQ+ VF Sbjct: 303 HWVD----RTPIKAPLSCTVKTRYRQTDIPCTIIPVDDENIKVIFDEPQIAVTPGQSAVF 358 Query: 368 YTSDSNEARVLGGGIIS 384 Y + LGGGII Sbjct: 359 YLDEV----CLGGGIIE 371 >gi|322378091|ref|ZP_08052577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sp. M334] gi|321280928|gb|EFX57942.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sp. M334] Length = 391 Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 141/389 (36%), Positives = 200/389 (51%), Gaps = 26/389 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L + N K RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A + Sbjct: 17 LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 72 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D D V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 73 DYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 132 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FP Sbjct: 133 YAMTLGADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 188 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E GL A K DS ICF+ + + + + N A G ++ ++G+ Sbjct: 189 LGHLEKPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGR 246 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 +G H G++ YTIGQR GLG+ P FVV D + + + VG +SL + Sbjct: 247 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSL 306 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 ++++ D + E+ ++ C K R Q V V D V F + + + GQ Sbjct: 307 EASQVHFTRD-MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQ 362 Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAV 392 A VFY + LGGG+I + R V Sbjct: 363 AVVFYDGE----ECLGGGLIDNAYRDGQV 387 >gi|238894182|ref|YP_002918916.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae NTUH-K2044] gi|238546498|dbj|BAH62849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 388 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 130/391 (33%), Positives = 208/391 (53%), Gaps = 32/391 (8%) Query: 6 ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65 A++ N + + +V+V MSGGVDSSV A LL + GY V G+ ++ + + Sbjct: 11 ASKFNVASISMSESQKKVIVGMSGGVDSSVSAYLLLQQGYKVGGLFMKNWEEDDGEEY-- 68 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +K Sbjct: 69 -CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIK 127 Query: 126 FSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 F L + LGAD +ATGHY+R R V DGK + + R +D +DQSYFL+ + +Q Sbjct: 128 FKAFLEFAAEDLGADYIATGHYVR-RADV--DGKSQ--LLRGLDGNKDQSYFLYTLSHEQ 182 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 + FP+G+++K VR +A E+ L A K DS ICF+ + K+ D + R A G Sbjct: 183 IAQSLFPVGELEKPQVRKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGK 240 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----P 294 I+ ++G+ +G H G++ +T+GQR+GLG+ +P +VV D ++ +IV P Sbjct: 241 ILTVDGEEIGTHQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGHDHP 300 Query: 295 RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFE 353 R L + ++++W+ + + +C VK R Q +P V ++D + V F+ Sbjct: 301 R--LMSVGLIAQQLHWVN----REPLQGTLRCTVKTRYRQTDIPCTVTALDEDRIEVRFD 354 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + V GQ+ VFY + LGGGII Sbjct: 355 EPVAAVTPGQSAVFYLGEV----CLGGGIIE 381 >gi|68248779|ref|YP_247891.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus influenzae 86-028NP] gi|68056978|gb|AAX87231.1| probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae 86-028NP] Length = 397 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 124/375 (33%), Positives = 207/375 (55%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+ MSGGVDSSV A +L++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 40 KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 96 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 97 KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 156 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 157 IATGHYVRR---AGDNENAK--LLRGLDANKDQSYFLYTLSHKQVGQSLFPVGEIEKPIV 211 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ D + R A G+I ++ +I+GRH+G++ Sbjct: 212 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDDEIIGRHDGLM 269 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ A E +VV D ++ +IV PR L + +++W Sbjct: 270 YHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQLHW 327 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + + + + +C VK R Q +P ++ +D+ + V F++ + V GQ+ VFY Sbjct: 328 VD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 383 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII+ Sbjct: 384 GEV----CLGGGIIA 394 >gi|89073381|ref|ZP_01159905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Photobacterium sp. SKA34] gi|89050868|gb|EAR56342.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Photobacterium sp. SKA34] Length = 371 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 123/378 (32%), Positives = 198/378 (52%), Gaps = 32/378 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDNDEY---CSAAEDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 65 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY R + K + M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 125 IAMGHYTRRSFPTAEGDKPQ--MLRGVDNNKDQSYFLYTLSHEQIARSLFPVGELEKPEV 182 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGI 259 R +A E L A K DS ICF+ + K+ + + + A G IV + G+ +G H G+ Sbjct: 183 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGKIVTADEGKEIGEHQGL 240 Query: 260 INYTIGQRRGL-------GVAMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLRE 307 + +T+GQR+GL G + +VV D S+ +IVG PR L+ + + ++ Sbjct: 241 MYHTLGQRKGLLIGGQKGGNGHEDAWYVVDKDVKSNLLIVGQGKDHPR--LKSNGLIAKQ 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACV 366 ++W+ + + C VK R Q +P + +D+ + V F++ ++ V GQ+ V Sbjct: 299 LHWVA----RKPIRETMACTVKTRYRQQDIPCTIIPVDDETIKVIFDEPQIAVTPGQSAV 354 Query: 367 FYTSDSNEARVLGGGIIS 384 FY N LGGGII Sbjct: 355 FY----NGEICLGGGIIE 368 >gi|71897609|ref|ZP_00679854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xylella fastidiosa Ann-1] gi|71732512|gb|EAO34565.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xylella fastidiosa Ann-1] Length = 379 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 126/375 (33%), Positives = 188/375 (50%), Gaps = 30/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R++VAMSGGVDSSV A L + G+ ++ + G C A +D DA VC Sbjct: 5 RIIVAMSGGVDSSVAAWRLNSQREAIAGLFMRNWTD----DGNGQCHAEEDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + ++ + D+ + V F + YA G TP P V CNR +KF L R+LGAD + Sbjct: 61 ILGIAFHFRDFSHEYWQEVFTHFLAEYANGRTPNPDVLCNREIKFKHFLETARELGADRI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R Y ++R + R D +DQSYFL Q+QL FP+GD++K+ +R Sbjct: 121 ATGHYARIEHY-----RQRWRLLRGADRSKDQSYFLHQLGQEQLAATLFPIGDLEKQQLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA + GL K DS ICF+ + + + +K+ A G+I Q + H G+ Sbjct: 176 QLAHQTGLPTHAKKDSTGICFIGERNFREFLKQYLP--AQPGEIRDPQEQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RESLEVHRIYLRE--INWLGD 313 +T+GQR+GL + P +V+ D ++ + V R+S + +LR +W+ Sbjct: 234 FTLGQRQGLNIGGVRNRPPSPWYVIGKDLATNVLYVDQHRDSPFLQSRWLRSEPAHWVSG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 F C + R Q +P V V RND + VDF +++ V GQ+ V Y D Sbjct: 294 ----SPPAPTFTCTAQTRYRQADEPCKVTV-RNDGSLDVDFTRTQWAVTPGQSLVLY--D 346 Query: 372 SNEARVLGGGIISGS 386 NE LGG +I+ + Sbjct: 347 GNE--CLGGAVIATT 359 >gi|225857998|ref|YP_002739508.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae 70585] gi|254811463|sp|C1CAE7|MNMA_STRP7 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|225721738|gb|ACO17592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae 70585] Length = 373 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 138/379 (36%), Positives = 199/379 (52%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +R+ +DG M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHY--ARVVRDEDGTVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G++ Sbjct: 181 KLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ P FVV D + + + VG +SL + ++++ D Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ C K R Q V V D V F + + + GQA VFY + Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE-- 352 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I + R V Sbjct: 353 --ECLGGGLIDNAYRDGQV 369 >gi|322375113|ref|ZP_08049627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sp. C300] gi|321280613|gb|EFX57652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sp. C300] Length = 415 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 141/389 (36%), Positives = 200/389 (51%), Gaps = 26/389 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L + N K RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A + Sbjct: 41 LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 96 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D D V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 97 DYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 156 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FP Sbjct: 157 YAMTLGADYVATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 212 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E GL A K DS ICF+ + + + + N A G ++ ++G+ Sbjct: 213 LGHLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGR 270 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 +G H G++ YTIGQR GLG+ P FVV D + + + VG +SL + Sbjct: 271 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSL 330 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 ++++ D + E+ ++ C K R Q V V D V F + + + GQ Sbjct: 331 EASQVHFTRD-MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQ 386 Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAV 392 A VFY + LGGG+I + R V Sbjct: 387 AVVFYDGE----ECLGGGLIDNAYRDGQV 411 >gi|331662546|ref|ZP_08363469.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli TA143] gi|331060968|gb|EGI32932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli TA143] Length = 357 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 128/368 (34%), Positives = 201/368 (54%), Gaps = 28/368 (7%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD + + Sbjct: 1 MSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCDKLGIE 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGH 145 + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD +ATGH Sbjct: 58 LHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGH 117 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y+R R V DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K VR +A Sbjct: 118 YVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAE 172 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G++ +T+G Sbjct: 173 DLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLMYHTLG 230 Query: 266 QRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLGDGLFE 317 QR+GLG+ EP +VV D +N+ ++ E + + L ++++W+ F Sbjct: 231 QRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVDREPFT 290 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY N Sbjct: 291 GTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY----NGEV 342 Query: 377 VLGGGIIS 384 LGGGII Sbjct: 343 CLGGGIIE 350 >gi|297181285|gb|ADI17477.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain-protein [uncultured beta proteobacterium HF0130_04F21] Length = 385 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 127/392 (32%), Positives = 194/392 (49%), Gaps = 36/392 (9%) Query: 8 RLN-SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 +LN L++ K +V+ MSGGVDSSV A LLK G+ V+G+ ++ ++ Sbjct: 13 KLNIKLEIIKMITKKHIVIGMSGGVDSSVAAWLLKSQGHKVVGIFMKNWDDDDTDTY--- 69 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C + QD DA + I + + +R V F Y+ G TP P V CN +KF Sbjct: 70 CTSKQDFLDAAAASEIIGIEFDAVSFSNEYRKKVFNDFLHEYSLGRTPNPDVFCNSEIKF 129 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L ++ LGAD++ATGHY ++ + + + + + D +DQSYFL TQ+QL Sbjct: 130 KSFLHHSQNLGADLIATGHYAKTIKNINGEFE----LHKGKDQNKDQSYFLHRLTQKQLR 185 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 FPLG K+ VR LA+E+GL A+K DS ICF+ + + + + + G + Sbjct: 186 YTTFPLGQYYKKDVRKLAQEIGLPNANKRDSTGICFIGERPFKVFLSKYLK--TMSGPVC 243 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA----------MGEPLFVVYLDKNSSRVIVGP-R 295 +G+I+G+H+G+ YTIGQR+GLG+ P FVV +K +R+IV Sbjct: 244 TTDGKIIGKHDGLSFYTIGQRKGLGIGGIKKSNDFEKTAAPWFVVAKEKKDNRLIVAQGH 303 Query: 296 ESLEVHRIYLREIN--WLGDGL--FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD 351 ++ + L IN W+ FE+ VKIR Q + + ++ Sbjct: 304 DNPFLMSTSLSAINPSWVKGKAPKFEEME-------VKIRYRQKTFSCILSVRSEKFFLK 356 Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 F+ + GV GQ+ V Y + LGGGII Sbjct: 357 FDSPQRGVTPGQSAVLYKGE----ECLGGGII 384 >gi|145635278|ref|ZP_01790981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae PittAA] gi|205822421|sp|Q4QP16|MNMA_HAEI8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|145267422|gb|EDK07423.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae PittAA] Length = 383 Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 124/375 (33%), Positives = 207/375 (55%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+ MSGGVDSSV A +L++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 26 KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 82 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 83 KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 142 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 143 IATGHYVRR---AGDNENAK--LLRGLDANKDQSYFLYTLSHKQVGQSLFPVGEIEKPIV 197 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ D + R A G+I ++ +I+GRH+G++ Sbjct: 198 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDDEIIGRHDGLM 255 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ A E +VV D ++ +IV PR L + +++W Sbjct: 256 YHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQLHW 313 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + + + + +C VK R Q +P ++ +D+ + V F++ + V GQ+ VFY Sbjct: 314 VD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 369 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII+ Sbjct: 370 GEV----CLGGGIIA 380 >gi|262043152|ref|ZP_06016290.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039540|gb|EEW40673.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 388 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 130/391 (33%), Positives = 208/391 (53%), Gaps = 32/391 (8%) Query: 6 ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65 A++ N + + +V+V MSGGVDSSV A LL + GY V G+ ++ + + Sbjct: 11 ASKFNVASISMSESQKKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEEY-- 68 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +K Sbjct: 69 -CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIK 127 Query: 126 FSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 F L + LGAD +ATGHY+R R V DGK + + R +D +DQSYFL+ + +Q Sbjct: 128 FKAFLEFAAEDLGADYIATGHYVR-RADV--DGKSQ--LLRGLDGNKDQSYFLYTLSHEQ 182 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 + FP+G+++K VR +A E+ L A K DS ICF+ + K+ D + R A G Sbjct: 183 IAQSLFPVGELEKPQVRKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGK 240 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----P 294 I+ ++G+ +G H G++ +T+GQR+GLG+ +P +VV D ++ +IV P Sbjct: 241 ILTVDGEEIGTHQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGHDHP 300 Query: 295 RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFE 353 R L + ++++W+ + + +C VK R Q +P V ++D + V F+ Sbjct: 301 R--LMSVGLIAQQLHWVN----REPLQGTLRCTVKTRYRQTDIPCTVTALDEDRIEVRFD 354 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + V GQ+ VFY + LGGGII Sbjct: 355 EPVAAVTPGQSAVFYLGEV----CLGGGIIE 381 >gi|227874682|ref|ZP_03992843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mobiluncus mulieris ATCC 35243] gi|227844725|gb|EEJ54873.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mobiluncus mulieris ATCC 35243] Length = 394 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 140/399 (35%), Positives = 201/399 (50%), Gaps = 36/399 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++ +SGGVDS+V AA L GYDV ++L S + + Q + DAR+V Sbjct: 4 KVIIGLSGGVDSAVAAARLLEQGYDVHAFFMKLEESDCDGENNPTA---QALADARKVAA 60 Query: 82 TINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + +V++ +RF VI PF +YA+G TP PCV CNR KF ++ + G Sbjct: 61 YLGIPPEKFHVWELVDRFERGVITPFVEAYASGLTPNPCVRCNRVFKFGYVVERALREGF 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197 D +ATGHY R ++GD + R R LE+DQSY L + L FPL D++ K Sbjct: 121 DYVATGHYARLD-HIGDGFRLR----RGASLEKDQSYVLAGARAEMLAHAIFPLFDVRDK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 R A+ GL +A K DS DICF+ G + R G A G IV NG ++G+H Sbjct: 176 AETRAEAQRRGLPVAHKRDSFDICFIHDGDTRGFL-RGKLGGAQPGAIVDENGAVVGQHL 234 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G YT+GQRRGL + G+P +V +D + + V VGP E+L+VH+I INWL + Sbjct: 235 GAFLYTVGQRRGLHLPRPHEDGQPRYVTGVDVSRNVVTVGPLETLDVHQIRCGRINWLVE 294 Query: 314 GLF--EDAVVDGFKC--------------FVKIRSSQDPVPVFVQRND-DGVYVDFEKSE 356 F + V G + V+ R+ P P + +D D + V F ++ Sbjct: 295 PGFGRQLLTVSGQESREAPHETKETETPLTVQFRAHSHPEPATFKIDDQDRLTVIFPETA 354 Query: 357 V--GVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVE 393 GVA GQ+ V Y + A+ G S + R D E Sbjct: 355 TIRGVAPGQSLVIYHGNWVIAQAGITGTQSANPRQDTTE 393 >gi|307700537|ref|ZP_07637571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mobiluncus mulieris FB024-16] gi|307614258|gb|EFN93493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mobiluncus mulieris FB024-16] Length = 394 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 139/399 (34%), Positives = 201/399 (50%), Gaps = 36/399 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++ +SGGVDS+V AA L GYDV ++L S + + + Q + DAR+V Sbjct: 4 KVIIGLSGGVDSAVAAARLLEQGYDVHAFFMKLEESGRDEENNPTA---QALADARKVAA 60 Query: 82 TINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + +V++ +RF VI PF +YA+G TP PCV CNR KF ++ + G Sbjct: 61 YLGIPPEKFHVWELVDRFERGVITPFVEAYASGLTPNPCVRCNRVFKFGYVVERALREGF 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197 D +ATGHY ++GD + R R LE+DQSY L + L FPL D++ K Sbjct: 121 DYVATGHYA-CLDHIGDGFRLR----RGASLEKDQSYVLAGARAEMLAHAIFPLFDVRDK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 R A+ GL +A K DS DICF+ G + R G A G IV NG ++G+H Sbjct: 176 AETRAEAQRRGLPVAHKRDSFDICFIHDGDTRGFL-RGKLGGAQPGAIVDENGAVVGQHL 234 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G YT+GQRRGL + G+P +V +D + + V VGP E+L+VH+I INWL + Sbjct: 235 GAFLYTVGQRRGLHLPRPHEDGQPRYVTGVDVSHNVVTVGPLETLDVHQIRCGRINWLVE 294 Query: 314 GLF--EDAVVDGFKC--------------FVKIRSSQDPVPVFVQRND-DGVYVDFEKSE 356 F + V G + V+ R+ P P + +D D + V F ++ Sbjct: 295 PGFGRQLLTVSGQESREAPHETKETETPLTVQFRAHSHPEPATFEIDDQDRLTVIFPETA 354 Query: 357 V--GVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVE 393 GVA GQ+ V Y + A+ G S + R D E Sbjct: 355 TIRGVAPGQSLVIYHGNWVIAQAGITGTQSANPRQDTTE 393 >gi|213052788|ref|ZP_03345666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 374 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 127/373 (34%), Positives = 203/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 13 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 69 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 70 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 129 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V +GK R + R +D +DQSYFL+ +Q+ FP+G+++K V Sbjct: 130 IATGHYVR-RADV--NGKSR--LLRGLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQV 184 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ D + R A G I+ ++G +G H G++ Sbjct: 185 RKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDEIGEHQGLM 242 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ +P +VV D +N+ ++ E + + L ++++W+ Sbjct: 243 YHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGHEHPRLMSVGLIAQQLHWVD 302 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 F + +C VK R Q +P + +DD + V F++ V GQ+ VFY+ + Sbjct: 303 REPFTGTL----RCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQSAVFYSGE 358 Query: 372 SNEARVLGGGIIS 384 LGGGII Sbjct: 359 V----CLGGGIIE 367 >gi|170699615|ref|ZP_02890654.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia ambifaria IOP40-10] gi|170135497|gb|EDT03786.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia ambifaria IOP40-10] Length = 384 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 182/371 (49%), Gaps = 27/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L L A+++ Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDAEMI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + D + R G + +G+++G H G+ Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVIGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGD 313 YT GQR+G+G+ GEP FV D N+ V+ G + R + ++W+ Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRQLVAGNVSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + DGF C K R Q D F + + + + F ++ V GQ+ V Y + Sbjct: 295 ----EPPADGFSCGAKTRYRQADAACSFGRGDGERFSLAFNDAQWAVTPGQSAVLYDGEI 350 Query: 373 NEARVLGGGII 383 LGGGII Sbjct: 351 ----CLGGGII 357 >gi|311746884|ref|ZP_07720669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Algoriphagus sp. PR1] gi|126578570|gb|EAZ82734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Algoriphagus sp. PR1] Length = 403 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 132/404 (32%), Positives = 206/404 (50%), Gaps = 49/404 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDSSV A LL GY+VIG+ ++ ++ + C +D DA V + Sbjct: 6 RVVVGLSGGVDSSVAAHLLLEQGYEVIGMFMKNWHDESVT-ISNECPWMEDSTDAMLVAE 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + D E +R ++ Y AG TP P + CNR +KF L ++L AD + Sbjct: 65 KLGIPFQAIDLSEEYRERIVDYMFGEYKAGRTPNPDILCNREIKFDIFLKAAQKLKADFV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + + + DGK + D +DQSYFL Q+QL FP+G ++K VR Sbjct: 125 ATGHYCQ-KGEIEVDGKPVYQLLAGADPNKDQSYFLCQLDQEQLSKALFPIGHLQKPEVR 183 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVV-----------------------KRINAG 238 +A+E+ L ADK DSQ +CF+ + + D + ++I G Sbjct: 184 KIAKELDLITADKKDSQGLCFIGKVRLPDFLQQQLKPKKGRIIQIPEDLEIYKSQKIPVG 243 Query: 239 IALEG-DIVHL------------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLD 284 +A E D+ L G++LG HNG +T+GQR+GL V G+PLFV+ D Sbjct: 244 VAAEDLDLEDLEAISLPLHYRPEEGKVLGEHNGAHYFTVGQRKGLNVGGTGKPLFVISTD 303 Query: 285 KNSSRVIVGPRES---LEVHRIYLRE--INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339 + + G E+ L + ++++E I+W+ + L + V + + +IR Q Sbjct: 304 TKENVIYTGLGETHPGLLRNGLFVKEDQIHWIREDL-KLQVGESARYKARIRYRQPLTWA 362 Query: 340 FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 + R + G++V F++++ GVASGQ +Y D NE+ +G G I Sbjct: 363 TLIRKEKGLFVIFDQAQKGVASGQFVAWY--DENES--IGSGTI 402 >gi|53715285|ref|YP_101277.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis YCH46] gi|81608253|sp|Q64P39|MNMA3_BACFR RecName: Full=tRNA-specific 2-thiouridylase mnmA 3 gi|52218150|dbj|BAD50743.1| putative tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Bacteroides fragilis YCH46] Length = 362 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 125/378 (33%), Positives = 190/378 (50%), Gaps = 47/378 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGG+DS+ +L+ GY+++GVT++++ G + DAR + Sbjct: 7 RVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARELAA 52 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + HYV D F++ ++ F Y G TP PCV CN KF L+ +LG D + Sbjct: 53 RMGIEHYVADERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGCDWI 112 Query: 142 ATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 ATGHY R +Y+ GDD K +DQSYFL+ Q L FPLG+ Sbjct: 113 ATGHYSRLEERNGHIYIVAGDDDK------------KDQSYFLWRLGQDVLRRCIFPLGN 160 Query: 195 MKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNG 250 K++VRD E G + K +S ++CF+ +G Y D ++ + E G V G Sbjct: 161 YTKQTVRDYLHEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDAEVGPGWFVSSEG 219 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 LG+H G YTIGQR+GL +A+G+P +V+ ++ + V++G L+ + + N Sbjct: 220 VKLGQHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAGQLKAEYMVAEQDNI 279 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + ED + V+IR P+P V+R +DG + V F +A GQ+ VFY Sbjct: 280 VD----EDELFACPDLAVRIRYRSRPIPCRVKRLEDGHLLVRFLAEASAIAPGQSAVFYE 335 Query: 370 SDSNEARVLGGGIISGSK 387 RVLGG I+ + Sbjct: 336 G----RRVLGGAFIASQR 349 >gi|322391188|ref|ZP_08064660.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus peroris ATCC 700780] gi|321145941|gb|EFX41330.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus peroris ATCC 700780] Length = 453 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 140/389 (35%), Positives = 200/389 (51%), Gaps = 26/389 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L + N K RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A + Sbjct: 79 LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 134 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D D V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 135 DYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 194 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FP Sbjct: 195 YAMTLGADYVATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 250 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR +A E GL A K DS ICF+ + + + + N A G ++ ++G+ Sbjct: 251 LGHLEKPEVRKIAEEAGLATAKKKDSTGICFIGEKNFKEFLG--NYLPAQPGRMMTVDGR 308 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 +G H G++ YTIGQR GLG+ P FVV D + + + VG E+L + Sbjct: 309 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHEALMSTSL 368 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 ++++ D + E+ ++ C K R Q V V D V F + + + GQ Sbjct: 369 EASQVHFTRD-MPEEFTLE---CIAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQ 424 Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAV 392 A VFY + LGGG+I + R V Sbjct: 425 AVVFYDGE----ECLGGGLIDNAYRDGKV 449 >gi|307702622|ref|ZP_07639574.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus oralis ATCC 35037] gi|307623738|gb|EFO02723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus oralis ATCC 35037] Length = 373 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 138/379 (36%), Positives = 196/379 (51%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYI 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G++ Sbjct: 181 KLAEEAGLATAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ P FVV D + + + VG +SL + ++++ D Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSQNILYVGQGFYHDSLMSTSLEASQVHFTRD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ C K R Q V V D V F + + + GQA VFY + Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE-- 352 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I + R V Sbjct: 353 --ECLGGGLIDNAYRDGQV 369 >gi|161486247|ref|NP_753421.2| tRNA-specific 2-thiouridylase MnmA [Escherichia coli CFT073] gi|30173414|sp|Q8CXZ8|MNMA_ECOL6 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 368 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 129/373 (34%), Positives = 202/373 (54%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLCADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 124 IATGHYVR-RAXV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ + R A G I+ ++G +G H G++ Sbjct: 179 RKIAEDLGLVTAKKKDSTGICFIGERKFRKFLGRYLP--AQPGKIITVDGDEIGEHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLG 312 +T+GQR+GLG+ EP +VV D +N+ ++ E + + L ++++W+ Sbjct: 237 YHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVD 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSD 371 F + +C VK R Q +P V+ D D + V F++ V GQ+ VFY Sbjct: 297 REPFTGTM----RCTVKTRYRQTDIPCTVKALDADRIEVIFDEPVAAVTPGQSAVFY--- 349 Query: 372 SNEARVLGGGIIS 384 N LGGGII Sbjct: 350 -NGEVCLGGGIIE 361 >gi|289168790|ref|YP_003447059.1| tRNA methyl transferase [Streptococcus mitis B6] gi|288908357|emb|CBJ23199.1| tRNA methyl transferase [Streptococcus mitis B6] Length = 373 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 138/379 (36%), Positives = 199/379 (52%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +R+ DDG M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHY--ARVARDDDGTVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA + GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G++ Sbjct: 181 KLAEKAGLATAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ P FVV D + + + VG +SL + ++++ D Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ C K R Q V V D V F + + + GQA VFY + Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE-- 352 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I + R V Sbjct: 353 --ECLGGGLIDNAYRDGQV 369 >gi|209519013|ref|ZP_03267821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia sp. H160] gi|209500525|gb|EEA00573.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia sp. H160] Length = 416 Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 128/375 (34%), Positives = 185/375 (49%), Gaps = 31/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV MSGGVDSSV A LLK GYDV+G+ ++ + S+ C QD D V D Sbjct: 5 KVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L LGA+ + Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R +DG R + + +D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRE---NDG--RFELLKALDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKTKVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + D + R G + +G+ +G H G+ Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTTDGKTVGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YT GQR+G+G+ GEP F D ++ + V L H + +W+ Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFAAGKDIPTNTLYVAQGHDHPWLLCHTLSAGNTSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRN---DDGVY-VDFEKSEVGVASGQACVFY 368 + +GF C K R Q D F + +G++ + F+ ++ V GQ+ V Y Sbjct: 295 ----EPPAEGFACGAKTRYRQADAACTFNAASGNASEGLFDLTFDAAQWAVTPGQSAVLY 350 Query: 369 TSDSNEARVLGGGII 383 D LGGGII Sbjct: 351 DGDV----CLGGGII 361 >gi|307710241|ref|ZP_07646684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus mitis SK564] gi|307619003|gb|EFN98136.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus mitis SK564] Length = 373 Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 138/379 (36%), Positives = 196/379 (51%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G++ Sbjct: 181 RLAEEAGLATAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ P FVV D + + + VG +SL + ++++ D Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ C K R Q V V D V F + + + GQA VFY + Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE-- 352 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I + R V Sbjct: 353 --ECLGGGLIDNAYRDGQV 369 >gi|304372837|ref|YP_003856046.1| tRNA-specific 2-thiouridylase mnmA [Mycoplasma hyorhinis HUB-1] gi|304309028|gb|ADM21508.1| tRNA-specific 2-thiouridylase mnmA [Mycoplasma hyorhinis HUB-1] Length = 370 Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 124/369 (33%), Positives = 191/369 (51%), Gaps = 39/369 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 +VV+ MSGGVDSSV A LLK+ GY+VIGV ++ ++S + KG+ C +D Sbjct: 3 KVVIGMSGGVDSSVAAYLLKQQGYEVIGVFMRNWDSTLNNDIKGNDSYNDFICPQEKDWQ 62 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133 DA+ VC +N+ Y D+ + + V F Y +G+TP P + CN+ +KF L Sbjct: 63 DAQEVCKKLNIPIYRVDFIKEYWEEVFEDFIEKYKSGKTPNPDILCNKNIKFKHFLDYAL 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + AD +A GHY ++ ++GK + + DL +DQSYFL QL FPL Sbjct: 123 KTFNADFIAMGHYAKT-----ENGK----LFKAKDLTKDQSYFLAQLNNYQLSKTIFPLA 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQI 252 ++ K VR +A E+ L +K DS ICF+ + K+ D ++ N A GDIV ++ + Sbjct: 174 NITKTEVRKIATELDLITQNKKDSTGICFIGERKFTDFLQ--NYIPAQPGDIVDISKNKK 231 Query: 253 LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 +G+H GI+ +T+GQR+GLG+ M +P FVV + + V P+ + WL Sbjct: 232 IGKHIGIMYFTLGQRKGLGLNGMDQPYFVVGHNLEQKILYVAPQNQEQ----------WL 281 Query: 312 ----GDGLFEDAVVDGF---KCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQ 363 DG+ + + F K VK R Q+ +P +Q D+ + V++ + V GQ Sbjct: 282 ISDKADGINLNLIETNFDPNKLSVKFRYRQEDIPAKIQILDNAKIVVEYPQGFKAVTPGQ 341 Query: 364 ACVFYTSDS 372 V Y D Sbjct: 342 EVVIYQEDK 350 >gi|16272139|ref|NP_438342.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus influenzae Rd KW20] gi|260580945|ref|ZP_05848769.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae RdAW] gi|1074294|pir||D64144 probable ATPase HI0174 - Haemophilus influenzae (strain Rd KW20) gi|1573129|gb|AAC21843.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|260092434|gb|EEW76373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae RdAW] Length = 418 Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 124/375 (33%), Positives = 207/375 (55%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+ MSGGVDSSV A +L++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 61 KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 117 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 118 KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 177 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 178 IATGHYVRR---AGDNENAK--LLRGLDPNKDQSYFLYTLSHKQVGQSLFPVGEIEKPIV 232 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ D + R A G+I ++ +I+GRH+G++ Sbjct: 233 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDDEIIGRHDGLM 290 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ A E +VV D ++ +IV PR L + +++W Sbjct: 291 YHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQLHW 348 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + + + + +C VK R Q +P ++ +D+ + V F++ + V GQ+ VFY Sbjct: 349 VD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 404 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII+ Sbjct: 405 GEV----CLGGGIIA 415 >gi|301168825|emb|CBW28416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae 10810] Length = 418 Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 124/375 (33%), Positives = 207/375 (55%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+ MSGGVDSSV A +L++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 61 KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 117 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 118 KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 177 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 178 IATGHYVRR---AGDNENAK--LLRGLDPNKDQSYFLYTLSHKQVGQSLFPVGEIEKPIV 232 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ D + R A G+I ++ +I+GRH+G++ Sbjct: 233 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDDEIIGRHDGLM 290 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ A E +VV D ++ +IV PR L + +++W Sbjct: 291 YHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQLHW 348 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + + + + +C VK R Q +P ++ +D+ + V F++ + V GQ+ VFY Sbjct: 349 VD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 404 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII+ Sbjct: 405 GEV----CLGGGIIA 415 >gi|182415638|ref|YP_001820704.1| tRNA-specific 2-thiouridylase MnmA [Opitutus terrae PB90-1] gi|205816897|sp|B1ZZ32|MNMA_OPITP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|177842852|gb|ACB77104.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Opitutus terrae PB90-1] Length = 378 Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 130/391 (33%), Positives = 197/391 (50%), Gaps = 38/391 (9%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P +++VAMSGGVDSSV A LLK+ GYDV+G ++ N + G C QD+ DAR Sbjct: 2 PGAEKILVAMSGGVDSSVAALLLKQQGYDVVGAYMK--NWINEDQVIGHCPWQQDIEDAR 59 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV I + V + +R V+ YA G TP P + CNR VKF S + G Sbjct: 60 RVATQIGIEFRVVNLMREYRERVVAYLLDGYARGLTPNPDIMCNREVKFGVFRSWAKDHG 119 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIM---------------CRPMDLERDQSYFLFATTQ 182 +ATGHY + R+ V D ++ D +DQSYFL +Q Sbjct: 120 FAAIATGHYAQ-RVEVKPDLVTPAVLGGLNADGTPASTFALLEGADKNKDQSYFLALLSQ 178 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 +QL D RFP+G + K +R +ARE GL ADK DSQ ICF+ + K D ++ Sbjct: 179 EQLRDARFPIGHLPKPELRRIAREAGLATADKKDSQGICFIGEVKMQDFLRAYVPDA--P 236 Query: 243 GDIVH-LNGQILGRHNGIINYTIGQRRGLGVAMG--EPLFVVYLDKNSSRVIVGPRESLE 299 G IV +G+ LG+H G+ YT+GQR+G+G+ +VV + + R ++ + + Sbjct: 237 GPIVRATDGRELGQHRGLHFYTLGQRKGIGIPSNTDHEAYVVVGKRAADRALLVAFDHPD 296 Query: 300 VHRIYLREI-----NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFE 353 ++ RE+ +W+G + ++G ++R VP+ FV ++ + F Sbjct: 297 APGLFQREVRVHALSWIGKPVTTARALEG-----RVRYRDPRVPLEFVPESETTALIRFA 351 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + G+A+GQ FY + R+LGGG+ + Sbjct: 352 APQRGLAAGQILAFYDGE----RLLGGGVYA 378 >gi|288936092|ref|YP_003440151.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Klebsiella variicola At-22] gi|290510856|ref|ZP_06550226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Klebsiella sp. 1_1_55] gi|288890801|gb|ADC59119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Klebsiella variicola At-22] gi|289777572|gb|EFD85570.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Klebsiella sp. 1_1_55] Length = 388 Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 130/391 (33%), Positives = 208/391 (53%), Gaps = 32/391 (8%) Query: 6 ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65 A++ N + + +V+V MSGGVDSSV A LL + GY V G+ ++ + + Sbjct: 11 ASKFNVASISMSESQKKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEEY-- 68 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +K Sbjct: 69 -CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIK 127 Query: 126 FSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 F L + LGAD +ATGHY+R R V DGK + + R +D +DQSYFL+ + +Q Sbjct: 128 FKAFLEFAAEDLGADYIATGHYVR-RADV--DGKSQ--LLRGLDGNKDQSYFLYTLSHEQ 182 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 + FP+G+++K VR +A E+ L A K DS ICF+ + K+ D + R A G Sbjct: 183 IAQSLFPVGELEKPQVRKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGK 240 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----P 294 I+ ++G+ +G H G++ +T+GQR+GLG+ +P +VV D ++ +IV P Sbjct: 241 ILTVDGEEIGTHQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGHDHP 300 Query: 295 RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFE 353 R L + ++++W+ + + +C VK R Q +P V ++D + V F+ Sbjct: 301 R--LMSVGLIAQQLHWVD----REPLQGTLRCTVKTRYRQTDIPCTVTALDEDRIEVRFD 354 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + V GQ+ VFY + LGGGII Sbjct: 355 EPVAAVTPGQSAVFYLGEV----CLGGGIIE 381 >gi|8039809|sp|P44551|MNMA_HAEIN RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 383 Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 124/375 (33%), Positives = 207/375 (55%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+ MSGGVDSSV A +L++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 26 KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 82 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 83 KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 142 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 143 IATGHYVRR---AGDNENAK--LLRGLDPNKDQSYFLYTLSHKQVGQSLFPVGEIEKPIV 197 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ D + R A G+I ++ +I+GRH+G++ Sbjct: 198 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDDEIIGRHDGLM 255 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ A E +VV D ++ +IV PR L + +++W Sbjct: 256 YHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQLHW 313 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + + + + +C VK R Q +P ++ +D+ + V F++ + V GQ+ VFY Sbjct: 314 VD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 369 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII+ Sbjct: 370 GEV----CLGGGIIA 380 >gi|322390500|ref|ZP_08064018.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus parasanguinis ATCC 903] gi|321142774|gb|EFX38234.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus parasanguinis ATCC 903] Length = 373 Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 141/370 (38%), Positives = 193/370 (52%), Gaps = 25/370 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYAR----VSRDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G++ Sbjct: 181 RLAEEAGLATAKKKDSTGICFIGEKNFKEFLG--NYLPAQPGRMMTIDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ P FVV D + + + VG ESL + I++ D Sbjct: 239 YTIGQRGGLGIGGQQGGDNAPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASMIHFTRD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 E + +C K R Q V V+ D V F + + + GQA VFY D Sbjct: 299 MPEEFEM----ECTAKFRYRQPDSKVTVKVKGDKAEVIFAEPQRAITPGQAVVFY--DGQ 352 Query: 374 EARVLGGGII 383 E LGGGII Sbjct: 353 EC--LGGGII 360 >gi|304439506|ref|ZP_07399414.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372014|gb|EFM25612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 355 Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 128/371 (34%), Positives = 191/371 (51%), Gaps = 24/371 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K VV+ +SGGVDSSV A LLK GY+VIGV ++ ++ C A D D + Sbjct: 4 KKRTVVLGISGGVDSSVAAYLLKEQGYNVIGVFMKNWDENDEE-----CTATDDYLDVVK 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + +++ +Y ++E+ + + V F + Y G TP P V CN+ +KF L +LGA Sbjct: 59 VANALDIKYYTVNFEKEYWDTVFTYFLNEYKKGRTPNPDVMCNQNIKFKAFLDFALKLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +A GHY R + G + R +D +DQSYFL ++ L FP+GD+KKE Sbjct: 119 DYIAMGHYARVKHENG-----HSYLLRGVDENKDQSYFLSRVKEEALKKTIFPIGDIKKE 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A E+ L A K DS +CF+ + + + + G IV G +LG H+G Sbjct: 174 RVREIAEELNLATAKKKDSTGVCFIGERDFNKFLDKF--LFTKPGKIVDEAGNVLGEHSG 231 Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 +++YTIGQR+ GV GEP FV DKN + + + ++ +Y E ++ + Sbjct: 232 LMHYTIGQRKGIGIGGVGTGEPFFVA--DKNLEKNELIVAQGVDNPILYRDEF-YVEEPF 288 Query: 316 FEDAVVD-GFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F + D C KIR V + V + +D+ + V EK GV GQ VFY+ + Sbjct: 289 FINGTPDYPLNCTGKIRYRAPDVGMVVTKIDDETLKVKLEKPLKGVTPGQIAVFYSGEI- 347 Query: 374 EARVLGGGIIS 384 LG GII Sbjct: 348 ---CLGSGIIK 355 >gi|269977689|ref|ZP_06184653.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mobiluncus mulieris 28-1] gi|269934117|gb|EEZ90687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mobiluncus mulieris 28-1] Length = 394 Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 142/405 (35%), Positives = 198/405 (48%), Gaps = 48/405 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++ +SGGVDS+V AA L GYDV ++L S C G+D A+ + D Sbjct: 4 KVIIGLSGGVDSAVAAARLLEQGYDVHAFFMKLEESD---------CDGEDNPTAQALAD 54 Query: 82 TINVSHY---------VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 V+ Y V++ +RF VI PF +YA+G TP PCV CNR KF ++ Sbjct: 55 ARKVAAYLGIPPEKFHVWELVDRFERGVITPFVEAYASGLTPNPCVRCNRVFKFGYVVER 114 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + G D +ATGHY ++GD + R R LE+DQSY L + L FPL Sbjct: 115 ALREGFDYVATGHYA-CLDHIGDGFRLR----RGASLEKDQSYVLAGARAEMLAHAIFPL 169 Query: 193 GDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 D++ K R A+ GL +A K DS DICF+ G + R G A G IV NG Sbjct: 170 FDVRDKAETRSEAQRRGLPVAHKRDSFDICFIHDGDTRGFL-RGKLGGAQPGAIVDENGA 228 Query: 252 ILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 ++G+H G YT+GQRRGL + G+P +V +D N + V VGP E+L+VH+I Sbjct: 229 VVGQHLGAFLYTVGQRRGLHLPRPHEDGQPRYVTGVDVNRNVVTVGPLETLDVHQIRCGR 288 Query: 308 INWLGDGLF--EDAVVDG--------------FKCFVKIRSSQDPVPVFVQRND-DGVYV 350 INWL + F + V G V+ R+ P P + +D D + V Sbjct: 289 INWLVEPGFGRQLLTVSGQESREAPHETKETEMPLTVQFRAHSHPEPATFKIDDQDRLTV 348 Query: 351 DFEKSEV--GVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVE 393 F ++ GVA GQ+ V Y + A+ G S + R D E Sbjct: 349 IFPETATIRGVAPGQSLVIYHGNWVIAQAGITGTQSANPRQDTTE 393 >gi|296112822|ref|YP_003626760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Moraxella catarrhalis RH4] gi|295920516|gb|ADG60867.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Moraxella catarrhalis RH4] Length = 392 Score = 189 bits (479), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 207/389 (53%), Gaps = 34/389 (8%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K PKD++V+V MSGGVDSSV A LL++ G+ V G+ ++ + S+ C A D+ D Sbjct: 15 KAPKDIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSEY---CTAMTDLAD 71 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ V D I + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 72 AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131 Query: 136 ----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R DGK + + R +D +DQSYFL A ++ FP Sbjct: 132 PQFGLGADFIATGHYARRGF--SQDGKAQ--LLRGLDTNKDQSYFLHAVGGDKIAKTLFP 187 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 +G+++K VR +A++ L A+K DS ICF+ + K+ D +++ A +GDI +G Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 +G H+G++ YTIGQR G+G+ EP FV++ D ++R+IVG L+ + Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSDEL 305 Query: 304 YLREINWLGDGLFEDAVV---DGFKCFVKIR---SSQDPVPVFVQRNDDGVYVDFEKSEV 357 +++W G+ A + GF+C K R S QD + D V V F ++ Sbjct: 306 TAYKLDW---GIAPPAQIFGKQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFGDAQR 362 Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGS 386 V GQ+ VFY D LGGG+I G+ Sbjct: 363 AVTQGQSVVFYDGDI----CLGGGVIDGT 387 >gi|229845165|ref|ZP_04465299.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae 6P18H1] gi|229811876|gb|EEP47571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae 6P18H1] Length = 383 Score = 189 bits (479), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 124/375 (33%), Positives = 207/375 (55%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+ MSGGVDSSV A +L++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 26 KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 82 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 83 KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLCADY 142 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 143 IATGHYVRR---TGDNENAK--LLRGLDANKDQSYFLYTLSHKQVGQSLFPVGEIEKPIV 197 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ D + R A G+I ++G+I+GRH+G++ Sbjct: 198 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDGEIIGRHDGLM 255 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ A E +VV D ++ +IV PR L + +++W Sbjct: 256 YHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQLHW 313 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + + + + +C VK R Q +P ++ +D+ + V F++ + V GQ+ VFY Sbjct: 314 VD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 369 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII+ Sbjct: 370 DEV----CLGGGIIA 380 >gi|90413208|ref|ZP_01221203.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Photobacterium profundum 3TCK] gi|90325760|gb|EAS42218.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Photobacterium profundum 3TCK] Length = 371 Score = 189 bits (479), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 124/378 (32%), Positives = 204/378 (53%), Gaps = 32/378 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + + + C A +D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNW---EEDDNEEYCSAAEDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 65 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY R R + +G++ + M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 125 IAMGHYTR-RSFPTAEGEKPK-MLRGVDGNKDQSYFLYTLSHEQIARSLFPVGELEKPEV 182 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGI 259 R +A E L A K DS ICF+ + K+ + + + A G I + G+++G H G+ Sbjct: 183 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGKIETADEGKVIGEHQGL 240 Query: 260 INYTIGQRRGL-------GVAMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLRE 307 + +T+GQR+GL G + + +VV D + +IVG PR L+ + + + Sbjct: 241 MYHTLGQRKGLHIGGQKGGNGLEDAWYVVDKDLKRNVLIVGQGKDHPR--LKSNGLVASQ 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACV 366 ++W+ + C VK R Q+ +P + +D+ + V F++ ++ V GQ+ V Sbjct: 299 LDWVD----RQPIRQPMTCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAV 354 Query: 367 FYTSDSNEARVLGGGIIS 384 FY SNE LGGGII Sbjct: 355 FY---SNEI-CLGGGIIE 368 >gi|145633601|ref|ZP_01789329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae 3655] gi|229847290|ref|ZP_04467393.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae 7P49H1] gi|144985807|gb|EDJ92421.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae 3655] gi|229809833|gb|EEP45556.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae 7P49H1] Length = 383 Score = 189 bits (479), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 124/375 (33%), Positives = 207/375 (55%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+ MSGGVDSSV A +L++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 26 KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 82 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 83 KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLCADY 142 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 143 IATGHYVRR---TGDNENAK--LLRGLDANKDQSYFLYTLSHKQVGQSLFPVGEIEKPIV 197 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ D + R A G+I ++G+I+GRH+G++ Sbjct: 198 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDGEIIGRHDGLM 255 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ A E +VV D ++ +IV PR L + +++W Sbjct: 256 YHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQLHW 313 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + + + + +C VK R Q +P ++ +D+ + V F++ + V GQ+ VFY Sbjct: 314 VD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 369 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII+ Sbjct: 370 DEV----CLGGGIIA 380 >gi|322388413|ref|ZP_08062016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus infantis ATCC 700779] gi|321140726|gb|EFX36228.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus infantis ATCC 700779] Length = 373 Score = 189 bits (479), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 138/379 (36%), Positives = 199/379 (52%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +R+ +DG M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHY--ARVLRDEDGVVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G++ Sbjct: 181 KLAEEAGLATAKKKDSTGICFIGEKNFKEFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ P FVV D + + + VG +SL + ++++ D Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSQNILYVGQGFYHDSLMSTSLEASQVHFTRD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ C K R Q V V D V F + + + GQA VFY + Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE-- 352 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I + R V Sbjct: 353 --ECLGGGLIDNAYRDGKV 369 >gi|293390912|ref|ZP_06635246.1| tRNA-specific 2-thiouridylase mnmA [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951446|gb|EFE01565.1| tRNA-specific 2-thiouridylase mnmA [Aggregatibacter actinomycetemcomitans D7S-1] Length = 383 Score = 189 bits (479), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 129/387 (33%), Positives = 214/387 (55%), Gaps = 29/387 (7%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +L + L +N +++ MSGGVDSSV A +L++ GY V G+ ++ + + C Sbjct: 12 KLTAQQLAENATK-KIICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YC 67 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 A D+ DA+ VCD + + + ++ + + V F S Y AG TP P + CN+ +KF Sbjct: 68 TAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFK 127 Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L + LGA+ +ATGHY+R R DD + + R +D +DQSYFL+ ++ Q+ Sbjct: 128 AFLEYAAEDLGANYIATGHYVRRR--GADDNAQ---LLRGLDNNKDQSYFLYTLSKIQVG 182 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 FP+G+++K VR +A E+GL A K DS ICF+ + K+ D + R A G+I Sbjct: 183 QSLFPVGNIEKPIVRAIAEELGLVTAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIR 240 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESL 298 ++G+I+GRH+G++ +T+GQR+GLG+ A + +VV D ++ +IV +L Sbjct: 241 TVDGEIIGRHDGLMYHTLGQRKGLGIGGVKGAGEDAWYVVEKDLINNELIVAQGHEHSAL 300 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + ++++W+ D L + +C VK R Q VP ++ +D+ + V F++ ++ Sbjct: 301 LSTGLIAQQLHWV-DRL---PIRAPLRCTVKTRYRQTDVPCTIEPIDDETIKVIFDEPQI 356 Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGGII Sbjct: 357 AVTPGQSAVFYLDEI----CLGGGIIE 379 >gi|152992636|ref|YP_001358357.1| tRNA-specific 2-thiouridylase MnmA [Sulfurovum sp. NBC37-1] gi|205828996|sp|A6Q941|MNMA_SULNB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|151424497|dbj|BAF72000.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Sulfurovum sp. NBC37-1] Length = 340 Score = 189 bits (479), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 122/368 (33%), Positives = 191/368 (51%), Gaps = 39/368 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V +SGGVDS+V A LL+++GY+V GV ++L++ + ++V D Sbjct: 5 KVLVGLSGGVDSTVTAVLLQKEGYEVEGVYMRLHDKPGYHEDNWG--------KVQKVAD 56 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D E F V F SY G TP PCV CNRT+KF ++ LG + + Sbjct: 57 YLRIKVHFHDLSEAFNANVYEYFVESYKKGLTPNPCVMCNRTIKFGKMVEFADTLGIEFV 116 Query: 142 ATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 ATGHY++ + +Y +D +DQSYFL ++ L L FPLG K+ Sbjct: 117 ATGHYLQCDGNYIYAAEDAG------------KDQSYFLSEVKKEVLPRLLFPLGTWIKD 164 Query: 199 SVRDLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 V+ A + + + A +++S +ICFV+ +D V + I + G+ V G ++G H Sbjct: 165 DVKAYAANIDVLKEFATQAESSEICFVENS--YDEVLAKHMNIDMPGETVDTQGNVVGTH 222 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G ++YTIG+RRG V +P FV+ + S++++VG RE LE + +++IN L Sbjct: 223 KGYMHYTIGKRRGFFVNGAHDPHFVIDIKPESNQIVVGTREKLEENAFEVKQIN-----L 277 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 FED V F C VK+R VP ++ + V + G+A Q FY Sbjct: 278 FEDLV--EFDCEVKVRYRTRAVPCHIKIEGERATVVLTEPVFGLAKEQVAAFYDG----R 331 Query: 376 RVLGGGII 383 R+LGGG+I Sbjct: 332 RLLGGGVI 339 >gi|260768141|ref|ZP_05877075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio furnissii CIP 102972] gi|260616171|gb|EEX41356.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio furnissii CIP 102972] Length = 372 Score = 189 bits (479), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 120/373 (32%), Positives = 197/373 (52%), Gaps = 26/373 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + + C A +D+ DA+ VCD Sbjct: 12 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNW---EEDDNEEYCTAAEDLADAQAVCD 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 69 KLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLDADY 128 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY+R + G++ + M R +D +DQSYFL+ +Q+ FP+G+++K V Sbjct: 129 IAMGHYVRRTF--PEHGEKPQ-MLRGLDGNKDQSYFLYTLGHEQVARSLFPVGELEKPEV 185 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A K DS ICF+ + K+ D + R A G I G+++G H G++ Sbjct: 186 RRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGEHQGLM 243 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +T+GQR+GL + +P +V D + +I L+ + + +++W+ Sbjct: 244 YHTLGQRKGLHIGGMKDGSEDPWYVAEKDLKRNVLIAVQGADHPLLKSNGLIASQLHWV- 302 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 D + + + +C VK R Q + V D+ + V F++ +V V GQ+ VFY + Sbjct: 303 DRM---PMTEPMRCTVKTRYRQTDIQCTVTPVDENTIKVMFDEPQVAVTPGQSAVFYQGE 359 Query: 372 SNEARVLGGGIIS 384 LGGGII Sbjct: 360 V----CLGGGIIE 368 >gi|182683091|ref|YP_001834838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae CGSP14] gi|182628425|gb|ACB89373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae CGSP14] Length = 391 Score = 189 bits (479), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 143/395 (36%), Positives = 202/395 (51%), Gaps = 38/395 (9%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L + N K RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A + Sbjct: 17 LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 72 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D D V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 73 DYKDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 132 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY +R+ +DG M R +D +DQ+YFL +Q+QL FP Sbjct: 133 YAMTLGADYVATGHY--ARVVRDEDGTVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFP 188 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E GL A K DS ICF+ + + + + N A G ++ ++G+ Sbjct: 189 LGHLEKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGR 246 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESL 298 +G H G++ YTIGQR GLG+ P FVV D + + + VG SL Sbjct: 247 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSL 306 Query: 299 EVHRIYL-REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV 357 E +++ RE+ E+ ++ C K R Q V V D V F + + Sbjct: 307 EASQVHFTREMP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFTEPQR 356 Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGSKRSDAV 392 + GQA VFY + LGGG+I + R V Sbjct: 357 AITPGQAVVFYDGE----ECLGGGLIDNAYRDGQV 387 >gi|303256580|ref|ZP_07342594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderiales bacterium 1_1_47] gi|302860071|gb|EFL83148.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderiales bacterium 1_1_47] Length = 378 Score = 189 bits (479), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 134/373 (35%), Positives = 192/373 (51%), Gaps = 25/373 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV +SGGVDS+V A LLK+ GY+VIG+ ++ + S+ C + QD+ DA V D Sbjct: 23 VVVGLSGGVDSAVSAYLLKKQGYEVIGLFMKNWEDDDDSE---YCSSRQDLIDATAVADV 79 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + ++ + +++ V F S Y+AG TP P V CN +KF L +LGAD +A Sbjct: 80 IGIDIEAVNFAKEYKDRVFAEFLSEYSAGRTPNPDVLCNSEIKFKAFLDHAIRLGADKIA 139 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R R DG + + +D +DQSYFL Q QL FP+GDM K VR Sbjct: 140 TGHYARVR---ERDGLFE--LLKGVDNTKDQSYFLNRLNQYQLSKAMFPVGDMCKTEVRR 194 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A E+GL A K DS ICF+ + + + + R A G I +G+I+G H G+ Y Sbjct: 195 IAEEIGLPNAKKKDSTGICFIGERPFREFLHRYLANKP--GPIKTPDGRIVGEHIGLSYY 252 Query: 263 TIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRES--LEVHRIYLREINWLGDG 314 T+GQR+G+GV GEP FV D N++ IV + L+ + NW+ Sbjct: 253 TLGQRKGIGVGGSKFGNGEPWFVARKDIPNNTLYIVQGHDHPWLQSFSLSATRPNWISGT 312 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 E + G K ++ + V ++ +D+ V V V GQ+ VFY +E Sbjct: 313 APEAGRMLGLKTRYRMADQECKV---IRTDDESVVVSSLDPLWAVTPGQSAVFY----DE 365 Query: 375 ARVLGGGIISGSK 387 LGG II S+ Sbjct: 366 EVCLGGAIIGTSR 378 >gi|296102847|ref|YP_003612993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057306|gb|ADF62044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 370 Score = 189 bits (479), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 126/375 (33%), Positives = 200/375 (53%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 125 IATGHYVRRA-----DVNGKSQLLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+ L A K DS ICF+ + K+ D + R A G IV ++G +G+H G++ Sbjct: 180 RKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIVTVDGDEIGQHQGLM 237 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ +P +VV D ++ +IV PR L + ++++W Sbjct: 238 YHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNILIVAQGHDHPR--LMSVGLIAQQLHW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + + + +C VK R Q +P + +DD + V F++ V GQ+ VFY+ Sbjct: 296 VD----REPLKGTLRCTVKTRYRQTDIPCTITALDDDRIDVRFDEPVAAVTPGQSAVFYS 351 Query: 370 SDSNEARVLGGGIIS 384 D LGGGII Sbjct: 352 GDI----CLGGGIIE 362 >gi|322374000|ref|ZP_08048534.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sp. C150] gi|321276966|gb|EFX54037.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sp. C150] Length = 373 Score = 189 bits (479), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 140/379 (36%), Positives = 200/379 (52%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +++ +DG M R D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHY--AQVVRDEDGIVH--MLRGADNNKDQTYFLSQLSQEQLQKTMFPLGHLQKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A GL A K DS ICF+ + + + + + A +G ++ ++G+ +G HNG++ Sbjct: 181 EIAEHAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEHNGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR G+G+ P FVV D + + + VG ESL + I++ D Sbjct: 239 YTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDASMIHFTRD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 L E + +C K R Q V V+ D V F + + + GQA VFY D Sbjct: 299 MLEEFDM----ECTAKFRYRQPDSKVTVKVKGDKAEVIFAEPQRAITPGQAVVFY--DGQ 352 Query: 374 EARVLGGGIISGSKRSDAV 392 E LGGGII + + V Sbjct: 353 EC--LGGGIIDQAYKDGKV 369 >gi|303255169|ref|ZP_07341245.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae BS455] gi|303259175|ref|ZP_07345153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP-BS293] gi|303263258|ref|ZP_07349181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae BS397] gi|303265423|ref|ZP_07351323.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae BS457] gi|302597999|gb|EFL65069.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae BS455] gi|302639593|gb|EFL70050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP-BS293] gi|302644863|gb|EFL75110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae BS457] gi|302647031|gb|EFL77255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae BS397] Length = 373 Score = 189 bits (479), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 138/379 (36%), Positives = 196/379 (51%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G++ Sbjct: 181 KLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ P FVV D + + + VG +SL + ++++ D Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ C K R Q V V D V F + + + GQA VFY + Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE-- 352 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I + R V Sbjct: 353 --ECLGGGLIDNAYRDGQV 369 >gi|225024394|ref|ZP_03713586.1| hypothetical protein EIKCOROL_01269 [Eikenella corrodens ATCC 23834] gi|224942775|gb|EEG23984.1| hypothetical protein EIKCOROL_01269 [Eikenella corrodens ATCC 23834] Length = 368 Score = 189 bits (479), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 123/375 (32%), Positives = 190/375 (50%), Gaps = 24/375 (6%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P ++V +SGGVDSSV A LLK+ G+ V GV +Q + + C QD +DA Sbjct: 2 PTPQNIIVGLSGGVDSSVTAHLLKQQGHQVRGVFMQNWEDDDNDEY---CSIKQDSFDAI 58 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 V D I + + ++ ++++ V F Y AG TP P V CN +KF L + G Sbjct: 59 AVADIIGIDIDIVNFAAQYKDKVFAYFLQEYQAGRTPNPDVLCNAEIKFKCFLDYAVEQG 118 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A+ +ATGHY R ++ G + + + +D +DQSYFL+ QL FPLG ++K Sbjct: 119 AEAIATGHYARKEVHSG-----KHYLLKGLDANKDQSYFLYRLQPHQLERALFPLGHLEK 173 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR +A E GL A K DS ICF+ + + + +++ + EGD+V G+++G+H Sbjct: 174 PEVRRIAAEAGLPTAAKKDSTGICFIGERPFREFLQKYLS--TCEGDMVTPEGKVVGKHI 231 Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWL-- 311 G++ YT+GQR+GLG+ GEP FV D ++R+IV L + + +++W Sbjct: 232 GLMFYTLGQRKGLGIGGAGEPWFVAGKDLAANRLIVVQGHQHPMLFSGSLTMSQLSWTLP 291 Query: 312 ---GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 G+ + C + R + P + DD + F+ + V GQ+ V Y Sbjct: 292 ENPGEAHGSRPPEGRYTCKTRYRMADAPCQLRY-LGDDSAELVFDAPQWAVTPGQSAVLY 350 Query: 369 TSDSNEARVLGGGII 383 D LGGGII Sbjct: 351 DGDV----CLGGGII 361 >gi|307707803|ref|ZP_07644280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus mitis NCTC 12261] gi|307616063|gb|EFN95259.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus mitis NCTC 12261] Length = 373 Score = 189 bits (479), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 139/387 (35%), Positives = 200/387 (51%), Gaps = 26/387 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + +N K RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSENSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 56 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D V D I + +Y ++E+ + ++V F + Y AG TP P V CN+ +KF L Sbjct: 57 KDVAAVADQIGIPYYSVNFEKEYWDSVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG Sbjct: 117 MTLGADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR LA E GL A K DS ICF+ + + + + N A G ++ ++ + + Sbjct: 173 HLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDSRDM 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 G H G++ YTIGQR GLG+ P FVV D + + + VG +SL + Sbjct: 231 GEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEA 290 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 ++++ D + E+ ++ C K R Q V V D V F + + + GQA Sbjct: 291 SQVHFTRD-MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAV 346 Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAV 392 VFY + LGGG+I + R V Sbjct: 347 VFYDGE----ECLGGGLIDNAYRDGQV 369 >gi|295675544|ref|YP_003604068.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia sp. CCGE1002] gi|295435387|gb|ADG14557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia sp. CCGE1002] Length = 420 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 128/376 (34%), Positives = 179/376 (47%), Gaps = 29/376 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV MSGGVDSSV A LLK GYDV+G+ ++ + S+ C QD D V D Sbjct: 5 KVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSE---YCSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L LGA+ + Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R DG R + + +D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRQNHERDG--RFELLKALDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKTKVR 179 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + D + R G + +G+I+G H G+ Sbjct: 180 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TRPGPMKTTDGKIVGEHIGLAF 237 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YT GQR+G+G+ GEP F D ++ + V L H + +W+ Sbjct: 238 YTFGQRKGIGLGGSKDGSGEPWFAAGKDIPTNTLYVAQGHDHPWLLCHTLSAGNTSWVAG 297 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY------VDFEKSEVGVASGQACVF 367 + DGF C K R Q G + F+ ++ V GQ+ V Sbjct: 298 ----EPPADGFACGAKTRYRQADAACTFNAAAAGGSGDGLFELTFDAAQWAVTPGQSAVL 353 Query: 368 YTSDSNEARVLGGGII 383 Y D LGGGII Sbjct: 354 YDGDV----CLGGGII 365 >gi|306826063|ref|ZP_07459399.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431779|gb|EFM34759.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 415 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 143/395 (36%), Positives = 200/395 (50%), Gaps = 38/395 (9%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L + N K RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A + Sbjct: 41 LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 96 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D D V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 97 DYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 156 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FP Sbjct: 157 YAMTLGADYVATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 212 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E GL A K DS ICF+ + + + + N A G ++ ++G+ Sbjct: 213 LGHLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGR 270 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESL 298 +G H G++ YTIGQR GLG+ P FVV D + + + VG SL Sbjct: 271 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSL 330 Query: 299 EVHRIYL-REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV 357 E +++ RE+ E+ ++ C K R Q V V D V F + + Sbjct: 331 EASQVHFTREMP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQR 380 Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGSKRSDAV 392 + GQA VFY + LGGG+I + R+ V Sbjct: 381 AITPGQAVVFYDGE----ECLGGGLIDNAYRNGKV 411 >gi|264680822|ref|YP_003280732.1| Predicted tRNA(5-methylaminomethyl-2- thiouridylate)methyltransferase [Comamonas testosteroni CNB-2] gi|262211338|gb|ACY35436.1| Predicted tRNA(5-methylaminomethyl-2- thiouridylate)methyltransferase [Comamonas testosteroni CNB-2] Length = 376 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 132/380 (34%), Positives = 192/380 (50%), Gaps = 34/380 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDS+V A LLK+ G++V+G+ ++ + S+ C + D DA V D Sbjct: 6 RVVVGLSGGVDSAVTAYLLKKQGHEVVGIFMKNWEDDDDSE---YCSSNIDFVDAAAVAD 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y AG TP P V CN +KF L +LGA+ + Sbjct: 63 VIGIEIEHVNFAADYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAEKI 122 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R + + + + +D +DQSYFL Q QL FP+G++ K VR Sbjct: 123 ATGHYARVRQ---NPSTQLFELLKGLDNSKDQSYFLHRLNQAQLSKAMFPVGELHKTEVR 179 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGII 260 +A E+GL A K DS ICF+ + + D + R I+ E G I+ + LG+H G+ Sbjct: 180 RIAEEIGLPNARKKDSTGICFIGERPFRDFLNRY---ISKEPGPILDDRNRKLGKHVGLS 236 Query: 261 NYTIGQRRGLGV--------AMG----EPLFVV--YLDKNSSRVIVGPRESLEV-HRIYL 305 YT+GQR GLG+ A G P FV +DKN RV+ G L + H + Sbjct: 237 FYTLGQRSGLGIGGVKEKGAARGAGDHAPWFVARKEMDKNILRVVQGHDHPLLLSHALLA 296 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQA 364 +++W+ A +G K R Q P + Q D G +DF +++ V GQ+ Sbjct: 297 DQVSWVAG----HAPAEGKAYGSKTRYRQPDSPALISQATDAGFRLDFPEAQWAVTPGQS 352 Query: 365 CVFYTSDSNEARVLGGGIIS 384 V Y D LGGGII+ Sbjct: 353 AVLYDGDV----CLGGGIIA 368 >gi|83746745|ref|ZP_00943793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia solanacearum UW551] gi|207744291|ref|YP_002260683.1| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase protein [Ralstonia solanacearum IPO1609] gi|83726514|gb|EAP73644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia solanacearum UW551] gi|206595696|emb|CAQ62623.1| probable trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase protein [Ralstonia solanacearum IPO1609] Length = 370 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 128/371 (34%), Positives = 184/371 (49%), Gaps = 27/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDSSV A LLK+ GY+V+G+ ++ + S+ C QD D V D Sbjct: 5 RVVVGLSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I+V ++ +++ V F Y+AG TP P V CN +KF L LGAD + Sbjct: 62 LIDVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGADTI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVREVDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKTRVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A E+GL A K DS ICF+ + + D + R G I G+ +G+H G+ Sbjct: 177 EIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPIKTPEGKTIGQHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313 YT+GQR+G+G+ G+ +V D N+ V+ G L H ++ +++W+ Sbjct: 235 YTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 +G K R Q P V DG + + F +++ V GQ+ V Y + Sbjct: 295 ----HPPAEGTHLAAKTRYRQADAPCTVAGATDGALALAFTEAQWAVTPGQSAVLYDGEV 350 Query: 373 NEARVLGGGII 383 LGGGII Sbjct: 351 ----CLGGGII 357 >gi|326577507|gb|EGE27387.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis O35E] Length = 392 Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 135/389 (34%), Positives = 207/389 (53%), Gaps = 34/389 (8%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K PKD++V+V MSGGVDSSV A LL++ G+ V G+ ++ + S+ C A D+ D Sbjct: 15 KAPKDIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSEY---CTAMTDLAD 71 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ V D I + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 72 AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131 Query: 136 ----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R DGK + + R +D +DQSYFL A ++ FP Sbjct: 132 PQFGLGADFIATGHYARRGF--SQDGKAQ--LLRGLDANKDQSYFLHAVGGDKIAKTLFP 187 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 +G+++K VR +A++ L A+K DS ICF+ + K+ D +++ A +GDI +G Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 +G H+G++ YTIGQR G+G+ EP FV++ D ++R+IVG L+ + Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSTEL 305 Query: 304 YLREINWLGDGLFEDAVV---DGFKCFVKIR---SSQDPVPVFVQRNDDGVYVDFEKSEV 357 +++W G+ + GF+C K R S QD + D V V F+ ++ Sbjct: 306 TAYKLDW---GIAPPVQIFGEQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFDDAQR 362 Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGS 386 V GQ+ VFY D LGGG+I G+ Sbjct: 363 AVTQGQSVVFYDGDI----CLGGGVIDGT 387 >gi|77413211|ref|ZP_00789409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae 515] gi|77160751|gb|EAO71864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae 515] Length = 373 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 140/383 (36%), Positives = 198/383 (51%), Gaps = 29/383 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 ++RVVV MSGGVDSSV A LLK GYDVIG ++ ++ + G C A +D D V Sbjct: 6 NIRVVVGMSGGVDSSVTALLLKEQGYDVIGXFMKNWDD---TDEFGVCTATEDYKDVAAV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 63 ADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K Sbjct: 123 YVATGHYAQ----VTRDENGIVHMLRGADNNKDQTYFLSQLSQEQLQKTLFPLGHLQKPE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E GL A K DS ICF+ + + D + + A G ++ ++G+ +G H G+ Sbjct: 179 VRRIAEEAGLATAKKKDSTGICFIGEKNFKDFLGQYLP--AQPGRMMTVDGRDMGEHAGL 236 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + YTIGQR GLG+ +P FVV D + + + VG +SL + EI++ Sbjct: 237 MYYTIGQRGGLGIGGQHGGDNKPWFVVGKDLSKNILYVGQGFYHDSLMSTSLTASEIHFT 296 Query: 312 GDGLFEDAVVDGFK--CFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 D + + FK C K R Q V V + V F+ + + GQA VFY Sbjct: 297 RD------MPNEFKLECTAKFRYRQPDSKVTVYVKGNQARVVFDDLQRAITPGQAVVFY- 349 Query: 370 SDSNEARVLGGGIISGSKRSDAV 392 NE LGGG+I + R D + Sbjct: 350 ---NEQECLGGGMIDQAYRDDKI 369 >gi|331000512|ref|ZP_08324184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Parasutterella excrementihominis YIT 11859] gi|329571476|gb|EGG53161.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Parasutterella excrementihominis YIT 11859] Length = 388 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 134/373 (35%), Positives = 192/373 (51%), Gaps = 25/373 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV +SGGVDS+V A LLK+ GY+VIG+ ++ + S+ C + QD+ DA V D Sbjct: 33 VVVGLSGGVDSAVSAYLLKKQGYEVIGLFMKNWEDDDDSE---YCSSRQDLIDATAVADV 89 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + ++ + +++ V F S Y+AG TP P V CN +KF L +LGAD +A Sbjct: 90 IGIDIEAVNFAKEYKDRVFAEFLSEYSAGRTPNPDVLCNSEIKFKAFLDHAIRLGADKIA 149 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R R DG + + +D +DQSYFL Q QL FP+GDM K VR Sbjct: 150 TGHYARVR---ERDGLFE--LLKGVDNTKDQSYFLNRLNQYQLSKAMFPVGDMCKTEVRR 204 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A E+GL A K DS ICF+ + + + + R A G I +G+I+G H G+ Y Sbjct: 205 IAEEIGLPNAKKKDSTGICFIGERPFREFLHRYLANKP--GPIKTPDGRIVGEHIGLSYY 262 Query: 263 TIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRES--LEVHRIYLREINWLGDG 314 T+GQR+G+GV GEP FV D N++ IV + L+ + NW+ Sbjct: 263 TLGQRKGIGVGGSKFGNGEPWFVARKDIPNNTLYIVQGHDHPWLQSFSLSATRPNWISGT 322 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 E + G K ++ + V ++ +D+ V V V GQ+ VFY +E Sbjct: 323 APEAGRMLGLKTRYRMADQECKV---IRTDDESVVVSSLDPLWAVTPGQSAVFY----DE 375 Query: 375 ARVLGGGIISGSK 387 LGG II S+ Sbjct: 376 EVCLGGAIIGTSR 388 >gi|167854995|ref|ZP_02477769.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus parasuis 29755] gi|219870378|ref|YP_002474753.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus parasuis SH0165] gi|167853843|gb|EDS25083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus parasuis 29755] gi|219690582|gb|ACL31805.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus parasuis SH0165] Length = 383 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 126/386 (32%), Positives = 209/386 (54%), Gaps = 29/386 (7%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 L L +N K +V+ MSGGVDSSV A +L++ GY V G+ ++ + + C Sbjct: 13 LTDEQLAENAKK-KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---CT 68 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 69 AAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKA 128 Query: 129 LLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 L + LGA+ +ATGHY+R ++ + R +D +DQSYFL+ ++QQ+ Sbjct: 129 FLEYAAEDLGANFIATGHYVRRPPL-----DQQPKLLRGLDSNKDQSYFLYTLSEQQVAQ 183 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 FP+GD++K VR +A ++GL A K DS ICF+ + K+ D + R A GDI Sbjct: 184 SLFPVGDIEKPIVRAIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLPAQA--GDIKT 241 Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRE---SLE 299 ++GQ++GRH+G++ +T+GQR+GLG+ A +VV D ++ +IV + +L Sbjct: 242 VDGQVIGRHDGLMYHTLGQRKGLGIGGVKGASENAWYVVEKDLVNNVLIVAQGQDNSALL 301 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVG 358 + +++W+ + + +C VK R Q + +Q +D+ + V F++ ++ Sbjct: 302 SSGLIASQLHWVD----RQPIREKLRCTVKTRYRQADILCEIQPLDDETIRVIFDEPQIA 357 Query: 359 VASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGGII Sbjct: 358 VTPGQSAVFYQGEV----CLGGGIIE 379 >gi|311744042|ref|ZP_07717848.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aeromicrobium marinum DSM 15272] gi|311313172|gb|EFQ83083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aeromicrobium marinum DSM 15272] Length = 363 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 145/376 (38%), Positives = 192/376 (51%), Gaps = 35/376 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRVV AMSGGVDS+V AA G+DV GV L L + + S R G+ CC+ +D DARR Sbjct: 8 MRVVAAMSGGVDSAVAAARAVDAGHDVTGVHLALSRNPR-SYRSGARGCCSIEDAGDARR 66 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + ++ YV+D E F + V+ F + YAAG TP PC+ CN ++KF+ +L LG Sbjct: 67 AADALGIAFYVWDMSEEFADHVVDDFVAEYAAGRTPNPCLRCNESIKFAAVLDRALALGF 126 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGHY + L DG M R +D +DQSY L TQ QL FPLG K Sbjct: 127 DAVVTGHY--ADLRTAPDGTIE--MHRAVDAAKDQSYVLGVLTQDQLAHSMFPLGGSVKS 182 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE------GDIVHLNGQI 252 VR A GL +A K DS DICF+ G NA E G+IV G + Sbjct: 183 DVRIEAERRGLQVATKPDSHDICFIPDGD--------NAAWLTEKLGPRPGEIVDEQGAV 234 Query: 253 LGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G H+G +TIGQRRGL + + G P FV+ ++ S V VG RESL V R+ + Sbjct: 235 VGSHDGAYAFTIGQRRGLRLGVPADDGRPRFVLDIEPVSGTVTVGARESLTVDRLECIKP 294 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 W G V++R+ V+ + V V+ G+A GQACV Y Sbjct: 295 LWCGSPPVS------LHATVQLRAHGAEHRARVRVAEGAVDVELTDPAEGIAPGQACVIY 348 Query: 369 TSDSNEARVLGGGIIS 384 + RV+G I+ Sbjct: 349 ----DGTRVVGSATIA 360 >gi|330016186|ref|ZP_08308416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Klebsiella sp. MS 92-3] gi|328529471|gb|EGF56376.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Klebsiella sp. MS 92-3] Length = 388 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 126/391 (32%), Positives = 204/391 (52%), Gaps = 32/391 (8%) Query: 6 ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65 A++ N + + +V+V MSGGVDSSV A LL + GY V G+ ++ + + Sbjct: 11 ASKFNVASISMSESQKKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEEY-- 68 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +K Sbjct: 69 -CTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIK 127 Query: 126 FSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 F L + LGAD +ATGHY+R D + + R +D +DQSYFL+ + +Q Sbjct: 128 FKAFLEFAAEDLGADYIATGHYVRRA-----DVNGKSQLLRGLDGNKDQSYFLYTLSHEQ 182 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 + FP+G+++K VR +A E+ L A K DS ICF+ + K+ D + R A G Sbjct: 183 IAQSLFPVGELEKPQVRKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGK 240 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----P 294 I+ ++G+ +G H G++ +T+GQR+GLG+ +P +VV D ++ +IV P Sbjct: 241 ILTVDGEEIGTHQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGHDHP 300 Query: 295 RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFE 353 R L + ++++W+ + + +C VK R Q +P V ++D + V F+ Sbjct: 301 R--LMSVGLIAQQLHWVN----REPLQGTLRCTVKTRYRQTDIPCTVTALDEDRIEVRFD 354 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + V GQ+ VFY + LGGGII Sbjct: 355 EPVAAVTPGQSAVFYLGEV----CLGGGIIE 381 >gi|50365230|ref|YP_053655.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mesoplasma florum L1] gi|81612889|sp|Q6F152|MNMA_MESFL RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|50363786|gb|AAT75771.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mesoplasma florum L1] Length = 374 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 129/376 (34%), Positives = 190/376 (50%), Gaps = 23/376 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 +V+V +SGGVDSSV A LL + GY+V G+ ++ ++S + G+ C QD Sbjct: 4 KVIVGLSGGVDSSVAAYLLIQQGYEVEGLFMRNWDSSANNDILGNQEIDNDVCPQEQDYL 63 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VT 133 DA V + + + + D+ + + V F Y G TP P + CN+ +KF L+ Sbjct: 64 DALEVANKLGIKLHRIDFVQEYWEYVFEYFIKEYKKGRTPNPDILCNKYIKFDKFLNHAI 123 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +L AD +A GHY R ++ ++ M R +D +DQ+YFL TQ QL FPL Sbjct: 124 NELKADYIAMGHYAGVRF---NEKTKQYEMIRAVDTNKDQTYFLCQLTQNQLSKTLFPLQ 180 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252 ++K +R +A E GL ADK DS ICF+ + ++ ++ N GDIV + ++ Sbjct: 181 SLEKPEIRKIAAEQGLITADKKDSTGICFIGEREFTKFLQ--NYISNQPGDIVDIKTNEV 238 Query: 253 LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 LG+H G + YTIGQR+GL + M EP +V D + + V P L + + EI Sbjct: 239 LGKHIGAMYYTIGQRKGLNLGGMKEPYYVAAKDIDKKIIYVCPASDESYLLSNNAIVTEI 298 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVF 367 NW D V+ F+C K R Q V V + + D Y V ++ V GQ VF Sbjct: 299 NWSLDLKQYIDNVEEFECTAKFRYRQPDVKVRLNKIKDNEYKVSYDAIVKAVTPGQEAVF 358 Query: 368 YTSDSNEARVLGGGII 383 Y +D LGGGII Sbjct: 359 YLNDI----CLGGGII 370 >gi|114332296|ref|YP_748518.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosomonas eutropha C91] gi|122313046|sp|Q0ADM9|MNMA_NITEC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|114309310|gb|ABI60553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosomonas eutropha C91] Length = 361 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 130/375 (34%), Positives = 188/375 (50%), Gaps = 29/375 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ + + C + +D DA V D Sbjct: 5 RVVVGMSGGVDSSVAALLLKQQGYDVIGLFMKNWEDDDTDEY---CSSRKDFLDAASVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ ++ +R V F + Y AG TP P V CN +KF L LGAD + Sbjct: 62 ILDIPLEAVNFSAEYRERVFSLFLAEYQAGRTPNPDVLCNSEIKFKAFLDHALALGADWI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + G + + + D +DQSYFL+ QQQL FP+G + K VR Sbjct: 122 ATGHYAQVHEING-----QFQLLKGEDGNKDQSYFLYRLNQQQLSRTIFPIGHLYKREVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + GL + K DS ICF+ + + + + R G+I L+GQI+G H G++ Sbjct: 177 KIAHKHGLPNSTKKDSTGICFIGERPFREFLNRYLP--VDPGEIHTLDGQIVGEHQGLMY 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGD 313 YTIGQR+GLG+ +P FV D ++ + V +L + +++W+ Sbjct: 235 YTIGQRQGLGIGGIREGSEQPWFVSGKDMQTNVLYVVQGHDHPALLRSSLTAADLSWISG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + V KIR Q P + R D + F + GV GQ+ V Y Sbjct: 295 APPHQSWVYA----AKIRYRQTDAPCAIIRLEHDSCQIGFAAPQWGVTPGQSVVIY---- 346 Query: 373 NEARV-LGGGIISGS 386 E++V LGGGII+ S Sbjct: 347 -ESKVCLGGGIITDS 360 >gi|309799040|ref|ZP_07693293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus infantis SK1302] gi|308117275|gb|EFO54698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus infantis SK1302] Length = 373 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 138/379 (36%), Positives = 196/379 (51%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYAR----VARDEAGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G++ Sbjct: 181 RLAEEAGLATAKKKDSTGICFIGEKNFKEFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ P FVV D + + + VG +SL + ++++ D Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ C K R Q V V D V F + + + GQA VFY + Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE-- 352 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I + R V Sbjct: 353 --ECLGGGLIDNAYRDGKV 369 >gi|329297165|ref|ZP_08254501.1| tRNA-specific 2-thiouridylase MnmA [Plautia stali symbiont] Length = 370 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 128/373 (34%), Positives = 197/373 (52%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAADDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L LGAD Sbjct: 65 KLGIKLHKINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAADDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V DG + + R +D +DQSYFL+ + QQ+ FP+G ++K V Sbjct: 125 IATGHYVR-RADV--DGTSQ--LLRGLDGNKDQSYFLYTLSHQQIAQSLFPVGKLEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ D + R A G I ++G+++G H G++ Sbjct: 180 RRIAEQLDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGVIETVDGEVVGEHQGLM 237 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +T+GQR+GLG+ + +P +VV D + +IV G L + ++++W+ Sbjct: 238 YHTLGQRKGLGIGGRKESSDDPWYVVDKDVARNTLIVAQGGDHPRLMSVGLIAQQLHWVD 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 V +C VK R Q +P + DD + V F++ V GQ+ VFY D Sbjct: 298 ----RQPVTAALRCTVKTRYRQSDIPCEIIPHGDDRIEVRFDEPVAAVTPGQSAVFYLGD 353 Query: 372 SNEARVLGGGIIS 384 LGGGII Sbjct: 354 V----CLGGGIIE 362 >gi|300703072|ref|YP_003744674.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia solanacearum CFBP2957] gi|299070735|emb|CBJ42030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia solanacearum CFBP2957] Length = 370 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 129/372 (34%), Positives = 184/372 (49%), Gaps = 27/372 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK+ GY+V+G+ ++ + S+ C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I V ++ +++ V F Y+AG TP P V CN +KF L LGAD + Sbjct: 62 LIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGADTI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVREVDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKTRVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A E+GL A K DS ICF+ + + D + R G I G+ +G+H G+ Sbjct: 177 EIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPIKTPEGKTIGQHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313 YT+GQR+G+G+ G+ +V D N+ V+ G L H ++ +++W+ Sbjct: 235 YTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 +G K R Q P V DG + + F +++ V GQ+ V Y + Sbjct: 295 ----HPPAEGTHLAAKTRYRQADAPCTVACATDGALALAFVEAQWAVTPGQSAVLYDGEV 350 Query: 373 NEARVLGGGIIS 384 LGGGII+ Sbjct: 351 ----CLGGGIIA 358 >gi|149005874|ref|ZP_01829603.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP18-BS74] gi|225855906|ref|YP_002737417.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae P1031] gi|237649790|ref|ZP_04524042.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae CCRI 1974] gi|237821488|ref|ZP_04597333.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae CCRI 1974M2] gi|307126353|ref|YP_003878384.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae 670-6B] gi|254811467|sp|C1CI29|MNMA_STRZP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|147762230|gb|EDK69191.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP18-BS74] gi|225725914|gb|ACO21766.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae P1031] gi|306483415|gb|ADM90284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae 670-6B] Length = 373 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 140/385 (36%), Positives = 195/385 (50%), Gaps = 37/385 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G++ Sbjct: 181 KLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYL-RE 307 YTIGQR GLG+ P FVV D + + + VG SLE +++ RE Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRE 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 + E+ ++ C K R Q V V D V F + + + GQA VF Sbjct: 299 MP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVF 348 Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392 Y + LGGG+I + R V Sbjct: 349 YDGE----ECLGGGLIDNAYRDGQV 369 >gi|315612257|ref|ZP_07887171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis ATCC 49296] gi|315315650|gb|EFU63688.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis ATCC 49296] Length = 415 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 143/395 (36%), Positives = 199/395 (50%), Gaps = 38/395 (9%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L + N K RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A + Sbjct: 41 LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 96 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D D V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 97 DYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 156 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FP Sbjct: 157 YAMTLGADYVATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 212 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E GL A K DS ICF+ + + + + N A G ++ ++G+ Sbjct: 213 LGHLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGR 270 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESL 298 +G H G++ YTIGQR GLG+ P FVV D + + + VG SL Sbjct: 271 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSL 330 Query: 299 EVHRIYL-REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV 357 E +++ RE+ E+ ++ C K R Q V V D V F + + Sbjct: 331 EASQVHFTREMP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQR 380 Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGSKRSDAV 392 + GQA VFY + LGGG+I + R V Sbjct: 381 AITPGQAVVFYDGE----ECLGGGLIDNAYRDGQV 411 >gi|227529026|ref|ZP_03959075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus vaginalis ATCC 49540] gi|227351038|gb|EEJ41329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus vaginalis ATCC 49540] Length = 377 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 134/381 (35%), Positives = 195/381 (51%), Gaps = 25/381 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLKR GYDV+GV ++ ++ + G C A +D D +V Sbjct: 8 RVVVGMSGGVDSSVTALLLKRQGYDVVGVFMKNWDD---TDENGVCTATEDYKDVAKVAT 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y G TP P V CN+ +KF + QLGAD + Sbjct: 65 KIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIDYANQLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + D R + R D +DQ+YFL QQL + FPL + K +R Sbjct: 125 ATGHYADLKR----DADGRMHLMRAKDQNKDQTYFLSQLDYQQLDKVLFPLANYTKPEIR 180 Query: 202 DLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 +A E GL A K DS ICF+ + G + + + + A G++ ++G+++G+H G++ Sbjct: 181 QIAEEAGLATAKKKDSVGICFIGEDGHFREFLSQYIP--AQPGNMETVDGKVVGQHMGLM 238 Query: 261 NYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313 YTIGQRRGLG+ + P FV+ D + + VG E L + +I+W+ D Sbjct: 239 YYTIGQRRGLGLGGNKKSNAPWFVIGKDIKKNVLYVGQGYENEHLYATHLEASDIHWVDD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSD 371 + F C K R Q V V V ++D V V F+ + GQA VFY + Sbjct: 299 AVSRYG--HDFHCTAKFRYRQKDVGVTVHISEDEQMVTVTFDDPARAITPGQAVVFYDGE 356 Query: 372 SNEARVLGGGIISGSKRSDAV 392 LG II + D + Sbjct: 357 ----ECLGSAIIDRAYNHDHL 373 >gi|168487074|ref|ZP_02711582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae CDC1087-00] gi|183570004|gb|EDT90532.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae CDC1087-00] Length = 373 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 140/385 (36%), Positives = 198/385 (51%), Gaps = 37/385 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +R+ +DG M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHY--ARVVRDEDGTVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G++ Sbjct: 181 KLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYL-RE 307 YTIGQR GLG+ P FVV D + + + VG SLE +++ RE Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRE 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 + E+ ++ C K R Q V V D V F + + + GQA VF Sbjct: 299 MP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVF 348 Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392 Y + LGGG+I + R V Sbjct: 349 YDGE----ECLGGGLIDNAYRDGQV 369 >gi|307705802|ref|ZP_07642645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus mitis SK597] gi|307620634|gb|EFN99727.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus mitis SK597] Length = 373 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 142/393 (36%), Positives = 199/393 (50%), Gaps = 38/393 (9%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + +N K RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSENSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 56 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 57 KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG Sbjct: 117 MTLGADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR LA E GL A K DS ICF+ + + + + N A G ++ ++G+ + Sbjct: 173 HLEKPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDM 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEV 300 G H G++ YTIGQR GLG+ P FVV D + + + VG SLE Sbjct: 231 GEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEA 290 Query: 301 HRIYL-REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV 359 +++ RE+ E+ ++ C K R Q V V D V F + + + Sbjct: 291 SQVHFTREMP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAI 340 Query: 360 ASGQACVFYTSDSNEARVLGGGIISGSKRSDAV 392 GQA VFY + LGGG+I + R V Sbjct: 341 TPGQAVVFYDGE----ECLGGGLIDNAYRDGQV 369 >gi|205829101|sp|B2IRK2|MNMA_STRPS RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 373 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 140/385 (36%), Positives = 198/385 (51%), Gaps = 37/385 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +R+ +DG M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHY--ARVVRDEDGTVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G++ Sbjct: 181 KLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYL-RE 307 YTIGQR GLG+ P FVV D + + + VG SLE +++ RE Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRE 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 + E+ ++ C K R Q V V D V F + + + GQA VF Sbjct: 299 MP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFTEPQRAITPGQAVVF 348 Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392 Y + LGGG+I + R V Sbjct: 349 YDGE----ECLGGGLIDNAYRDGQV 369 >gi|149010994|ref|ZP_01832299.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP19-BS75] gi|147764630|gb|EDK71560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP19-BS75] Length = 373 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 140/385 (36%), Positives = 198/385 (51%), Gaps = 37/385 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +R+ +DG M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHY--ARVVRDEDGTVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G++ Sbjct: 181 KLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYL-RE 307 YTIGQR GLG+ P FVV D + + + VG SLE +++ RE Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRE 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 + E+ ++ C K R Q V V D V F + + + GQA VF Sbjct: 299 MP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDEAEVIFAEPQRAITPGQAVVF 348 Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392 Y + LGGG+I + R V Sbjct: 349 YDGE----ECLGGGLIDNAYRDGQV 369 >gi|171920850|ref|ZP_02932016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178984|ref|ZP_02964738.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024081|ref|ZP_02996823.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518246|ref|ZP_03003776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524394|ref|ZP_03004420.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198273769|ref|ZP_03206303.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554475|ref|YP_002284838.1| tRNA-specific 2-thiouridylase MnmA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550854|ref|ZP_03771803.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551575|ref|ZP_03772521.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|229487425|sp|B5ZBP8|MNMA_UREU1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|171903054|gb|EDT49343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209268|gb|EDU06311.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019125|gb|EDU57165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998055|gb|EDU67152.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195660126|gb|EDX53506.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198249524|gb|EDY74306.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541976|gb|ACI60205.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379390|gb|EEH01755.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225380008|gb|EEH02370.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 380 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 129/381 (33%), Positives = 197/381 (51%), Gaps = 33/381 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-------NSRKASKRKGSCCAGQDVY 74 RVV+ +SGGVDSSV A LLK+ GY+VIG+ + + N+R++ K+ C + D Sbjct: 8 RVVIGLSGGVDSSVSALLLKQQGYEVIGLFMANWDTVANFENNRESDKKHQGCESELDYQ 67 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ V I + Y ++ + + N V F S Y TP P + CN+ +KF L+ + Sbjct: 68 DAQAVAQKIGIPLYRVEFIKEYWNNVFEYFLSEYQKNRTPNPDILCNQFIKFDSFLNYAK 127 Query: 135 -QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +L AD +A GHY + + + + D+ +DQ+YFL Q QL + FP+G Sbjct: 128 NELKADYIAMGHYAKVK-----HTNNLSYLLKATDVNKDQTYFLCNLKQTQLQNALFPIG 182 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFV--QQGKYFDVVKRINAGIALEGDIVHL-NG 250 D+ K+ VR +A+E GL A+K DS ICF+ + KYF N G+IV++ N Sbjct: 183 DLTKQQVRTIAKEYGLVTANKKDSTGICFIGERNFKYF----LENYIPNQPGEIVNIVNN 238 Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 QI+G H G + YTIGQR+GL + M E +FV D N + V P L + YL Sbjct: 239 QIVGHHMGTMYYTIGQRKGLNLGGMNERMFVCEKDINKKIIYVSP---LSLEDQYLISNQ 295 Query: 310 WLGDGL-FEDAVVDGFKCFVKIRSSQDPVPV---FVQRNDDGVYVDFEKSEVGVASGQAC 365 L + + F + V+ R Q+ V V N + V +++E ++ + GQ Sbjct: 296 ALVENMNFIEPYNPQIPISVRFRHRQNLVVVNSFLCIENTNNVLINYEPAK-AITPGQYA 354 Query: 366 VFYTSDSNEARVLGGGIISGS 386 VFY +D +GGG+I+ + Sbjct: 355 VFYQND----HCIGGGVIAQT 371 >gi|165975614|ref|YP_001651207.1| tRNA-specific 2-thiouridylase MnmA [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|205811090|sp|B0BS63|MNMA_ACTPJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|165875715|gb|ABY68763.1| tRNA(5-methylaminomethyl-2-thiouridylate)methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 389 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 126/387 (32%), Positives = 212/387 (54%), Gaps = 29/387 (7%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +L + L +N K +V++ MSGGVDSSV A +L++ GY V G+ ++ + + C Sbjct: 18 KLTAEQLAENAKK-KVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 73 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 A D+ DA+ V D + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 74 TAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKEIKFK 133 Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L + LGAD +ATGHY+R GDD + + R +D +DQSYFL+ + +Q+ Sbjct: 134 AFLEYAAEDLGADYIATGHYVRRS---GDDNNAQ--LLRGLDANKDQSYFLYTLSHKQVG 188 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 FP+GD++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 189 QSLFPVGDIEKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQPGEIR 246 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298 ++G+++GRH+G++ +T+GQR+GLG+ +P +VV D ++ ++V +L Sbjct: 247 TVDGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHDNSAL 306 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + +++W+ + + +C VK R Q + +Q +DD + V F++ ++ Sbjct: 307 LSSGLIATQLHWVD----RQPIRENLRCTVKTRYRQTDIACEIQPIDDDTIRVIFDEPQI 362 Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY D LGGG+I Sbjct: 363 AVTPGQSAVFYQGDV----CLGGGVIE 385 >gi|306828717|ref|ZP_07461909.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus mitis ATCC 6249] gi|304428895|gb|EFM31983.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus mitis ATCC 6249] Length = 373 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 138/379 (36%), Positives = 196/379 (51%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G++ Sbjct: 181 RLAEEAGLATAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ P FVV D + + + VG +SL + ++++ D Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ C K R Q V V D V F + + + GQA VFY + Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE-- 352 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I + R V Sbjct: 353 --ECLGGGLIDNAYRDGQV 369 >gi|256846987|ref|ZP_05552433.1| tRNA methyl transferase [Lactobacillus coleohominis 101-4-CHN] gi|256715651|gb|EEU30626.1| tRNA methyl transferase [Lactobacillus coleohominis 101-4-CHN] Length = 377 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 136/372 (36%), Positives = 196/372 (52%), Gaps = 25/372 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLKR GYDV+GV ++ ++ + G C A +D D +V Sbjct: 8 RVVVGMSGGVDSSVTALLLKRQGYDVVGVFMKNWDD---TDENGVCTATEDYKDVAKVAT 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y G TP P V CN+ +KF + QLGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + L DG + R D +DQ+YFL +QL + FPL + K +R Sbjct: 125 ATGHY--ADLKRDADGNMH--LMRAKDQHKDQTYFLSQLDHEQLDHVMFPLANYTKPEIR 180 Query: 202 DLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 +A+E GL +ADK DS ICF+ + G + + + + A G + ++G+++G H G++ Sbjct: 181 QIAKEAGLAVADKKDSVGICFIGEDGHFREFLSQYLP--AQPGKMETIDGKVVGEHAGLM 238 Query: 261 NYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLGD 313 YTIGQRRGLG+ EP FV+ D + +IVG S L + +I+W+ D Sbjct: 239 YYTIGQRRGLGLGGNKESNEPWFVIGKDIKRNVLIVGQGYSNPHLYATHLEASDIHWVDD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + F C K R Q + V V + ++ V V F+ + GQA VFY D Sbjct: 299 VVSRYG--HHFHCTAKFRYRQVDEGVTVDISDDETKVTVTFDDPARAITPGQAVVFY--D 354 Query: 372 SNEARVLGGGII 383 E LG II Sbjct: 355 GQEC--LGSAII 364 >gi|90579124|ref|ZP_01234934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio angustum S14] gi|90439957|gb|EAS65138.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio angustum S14] Length = 371 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 123/378 (32%), Positives = 202/378 (53%), Gaps = 32/378 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDNDEY---CSAAEDLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 65 KLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY R R + +G++ + M R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 125 IAMGHYTR-RSFPTAEGEKPQ-MLRGVDNNKDQSYFLYTLSHEQIARSLFPVGELEKPEV 182 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGI 259 R +A E L A K DS ICF+ + K+ + + + A G IV + G+ +G H G+ Sbjct: 183 RRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGKIVTADEGKEIGEHQGL 240 Query: 260 INYTIGQRRGL-------GVAMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLRE 307 + +T+GQR+GL G + +VV D ++ +IVG PR L+ + + ++ Sbjct: 241 MYHTLGQRKGLHIGGQKGGNGHEDAWYVVDKDVKNNLLIVGQGKDHPR--LKSNGLIAKQ 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACV 366 ++W+ + + C VK R Q +P + +D+ + V F++ ++ V GQ+ V Sbjct: 299 LHWVD----RQPIRETMACTVKTRYRQQDIPCTIIPVDDETIKVIFDEPQIAVTPGQSAV 354 Query: 367 FYTSDSNEARVLGGGIIS 384 FY N LGGGII Sbjct: 355 FY----NGEICLGGGIIE 368 >gi|257069046|ref|YP_003155301.1| tRNA-specific 2-thiouridylase MnmA [Brachybacterium faecium DSM 4810] gi|256559864|gb|ACU85711.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brachybacterium faecium DSM 4810] Length = 385 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 135/397 (34%), Positives = 195/397 (49%), Gaps = 50/397 (12%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+V+ AMSGGVDS+V AA G++V+GV + L SR + R GS CC +D DARR Sbjct: 1 MKVLAAMSGGVDSAVAAARAAEAGHEVVGVHMALSKSRDQT-RSGSRGCCTVEDASDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D I + +YV+D + F + V+ F + YAAG TP PCV CN +KF+ LL LG Sbjct: 60 AADRIGIPYYVWDLSDDFHDLVVEDFLAEYAAGRTPNPCVRCNERIKFASLLERATLLGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197 D + TGHY R D + R ++ +DQSY L + + FPLG+ + K Sbjct: 120 DAVCTGHYASIRT---DGPGGAPSLHRSRNMAKDQSYVLAVMGPEAVGRSLFPLGEYETK 176 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 E VR AR GL ++ K DS DICFV G ++R + G + G+++ +G +LG H Sbjct: 177 EEVRAEARSRGLGVSTKPDSYDICFVADGDTRGFLER-HLGES-PGEVLDEHGTVLGTHR 234 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G +TIGQR+GLG+ G P +VV +D +S +V++G E L + GD Sbjct: 235 GTHGFTIGQRKGLGIQQPAPDGAPRYVVDIDPSSRQVVIGAAELLSTRELV------AGD 288 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFV---------------------------QRNDD 346 + + + G + +IR+ + VP + D Sbjct: 289 VISFEPLEVGRQVHAQIRAHGEAVPARILEVPATSAAGPAAGVPASAVPDSADPAPAADG 348 Query: 347 GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 + V+ GVA GQ V Y +D RVL + Sbjct: 349 SLRVELSTPIRGVAPGQTLVLYDAD----RVLAAATL 381 >gi|299769236|ref|YP_003731262.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter sp. DR1] gi|298699324|gb|ADI89889.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter sp. DR1] Length = 377 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 123/374 (32%), Positives = 198/374 (52%), Gaps = 23/374 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ V D Sbjct: 4 RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTEY---CTAMEDLADAQAVAD 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F + YAAG TP P + CN+ +KF L LGAD + Sbjct: 61 KIGIKLHTANFAMEYWDRVFELFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGADFI 120 Query: 142 ATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY R G+ + R +D +DQ+YFL A +++ FP+G+++K V Sbjct: 121 ATGHYARRGETAYNSKGEAYAPLLRGVDNNKDQTYFLHAVHGKEINKTLFPVGEIEKPEV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+ L A K DS ICF+ + ++ D +K+ A G IV G+ +G H+G++ Sbjct: 181 RRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDTGKEVGEHHGLM 238 Query: 261 NYT-----IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312 YT GL A FV++ D ++R+++G ++ +++ I+W+ Sbjct: 239 YYTLGQRGGIGLGGLKGAAEGAWFVLHKDIANNRLVIGQGHEHPLMQSTQLWSESIDWVA 298 Query: 313 DGLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYT 369 ++ V+G +C K R Q VF+ N + GV V+F++ + V GQ+ VFY+ Sbjct: 299 GE--QNIPVEGLRCTAKTRYRQPDQACTVFIDENSEHGVRVEFDEPQRAVTPGQSVVFYS 356 Query: 370 SDSNEARVLGGGII 383 + LGGG+I Sbjct: 357 DEV----CLGGGVI 366 >gi|306817970|ref|ZP_07451707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mobiluncus mulieris ATCC 35239] gi|304649238|gb|EFM46526.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mobiluncus mulieris ATCC 35239] Length = 394 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 142/405 (35%), Positives = 199/405 (49%), Gaps = 48/405 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++ +SGGVDS+V AA L GYDV ++L S C G+D A+ + D Sbjct: 4 KVIIGLSGGVDSAVAAARLLEQGYDVHAFFMKLEESD---------CDGEDNPTAQALAD 54 Query: 82 TINVSHY---------VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 V+ Y V++ +RF VI PF +YA+G TP PCV CNR KF ++ Sbjct: 55 ARKVAAYLGIPPEKFHVWELVDRFERGVITPFVEAYASGLTPNPCVRCNRVFKFGYVVER 114 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + G D +ATGHY ++GD + R R LE+DQSY L + L FPL Sbjct: 115 ALREGFDYVATGHYA-CLDHIGDGFRLR----RGASLEKDQSYVLAGARAEMLAHAIFPL 169 Query: 193 GDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 D++ K R A+ GL +A K DS DICF+ G + R G A G IV NG Sbjct: 170 FDVRDKAETRAEAQRRGLPVAHKRDSFDICFIHDGDTRGFL-RGKLGGAQPGAIVDENGA 228 Query: 252 ILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 ++G+H G YT+GQRRGL + G+P +V +D N + V VGP E+L+VH+I Sbjct: 229 VVGQHLGAFLYTVGQRRGLHLPRPHEDGQPRYVTGVDVNRNVVTVGPLETLDVHQIRCGR 288 Query: 308 INWLGDGLF--EDAVVDGFKC--------------FVKIRSSQDPVPVFVQRND-DGVYV 350 INWL + F + V G + V+ R+ P P + +D D + V Sbjct: 289 INWLVEPGFGRQLLTVSGQESREAPHETKETETPLTVQFRAHSHPEPATFKIDDQDRLTV 348 Query: 351 DFEKSEV--GVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVE 393 F ++ GVA GQ+ V Y + A+ G S + R D E Sbjct: 349 IFPETATIRGVAPGQSLVIYHGNWVIAQAGITGTQSANPRQDTTE 393 >gi|148987860|ref|ZP_01819323.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP6-BS73] gi|148992708|ref|ZP_01822351.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP9-BS68] gi|149017799|ref|ZP_01834258.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP23-BS72] gi|168489391|ref|ZP_02713590.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP195] gi|168493828|ref|ZP_02717971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae CDC3059-06] gi|147926324|gb|EDK77397.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP6-BS73] gi|147928434|gb|EDK79449.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP9-BS68] gi|147931363|gb|EDK82341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP23-BS72] gi|183572139|gb|EDT92667.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP195] gi|183576137|gb|EDT96665.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae CDC3059-06] gi|301793411|emb|CBW35778.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae INV104] gi|332075800|gb|EGI86267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae GA17570] gi|332076573|gb|EGI87035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae GA17545] Length = 373 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 140/385 (36%), Positives = 195/385 (50%), Gaps = 37/385 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G++ Sbjct: 181 RLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYL-RE 307 YTIGQR GLG+ P FVV D + + + VG SLE +++ RE Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRE 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 + E+ ++ C K R Q V V D V F + + + GQA VF Sbjct: 299 MP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVF 348 Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392 Y + LGGG+I + R V Sbjct: 349 YDGE----ECLGGGLIDNAYRDGQV 369 >gi|172059678|ref|YP_001807330.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia ambifaria MC40-6] gi|205811349|sp|B1YTE9|MNMA_BURA4 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|171992195|gb|ACB63114.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia ambifaria MC40-6] Length = 389 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 126/376 (33%), Positives = 182/376 (48%), Gaps = 32/376 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L L A+++ Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDAEMI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + D + R G + +G+++G H G+ Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVIGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGD 313 YT GQR+G+G+ GEP FV D N+ V+ G + R + ++W+ Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRQLVAGNVSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPV------PVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 + DGF C K R Q P + + + + F+ ++ V GQ+ V Sbjct: 295 ----EPPADGFSCGAKTRYRQADAACSFGRPALGRADGERFSLTFDDAQWAVTPGQSAVL 350 Query: 368 YTSDSNEARVLGGGII 383 Y + LGGGII Sbjct: 351 YDGEI----CLGGGII 362 >gi|313206777|ref|YP_004045954.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Riemerella anatipestifer DSM 15868] gi|312446093|gb|ADQ82448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Riemerella anatipestifer DSM 15868] gi|315023849|gb|EFT36851.1| tRNA-specific 2-thiouridylase MnmA [Riemerella anatipestifer RA-YM] gi|325335784|gb|ADZ12058.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Riemerella anatipestifer RA-GD] Length = 395 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 123/401 (30%), Positives = 198/401 (49%), Gaps = 43/401 (10%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+VVV +SGGVDSSV A LL++ G++VIG+ ++ +N + + C +D DA V Sbjct: 1 MKVVVGLSGGVDSSVAAYLLQQQGHEVIGLFMRNWNDASVT-LEDECPWIEDSNDALLVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + V D E ++ ++ Y G TP P V CNR VKF + LGAD Sbjct: 60 QKLGIPFQVIDMSELYKERIVDYMFEEYEKGRTPNPDVLCNREVKFDVFMKTALSLGADK 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R ++G + D +DQSYFL Q+QL FP+G++ K V Sbjct: 120 VATGHYARLSTTEDENGTTTYHLLAGKDHNKDQSYFLCQLNQEQLSKALFPIGELTKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFV---------------QQGKYFDVVKRINAGIA----- 240 R++A+E+GL A+K DSQ +CF+ ++G+ ++ K A Sbjct: 180 REIAKEIGLVTANKKDSQGLCFIGKVSLPQFLQQQLKPKEGEIIEIFKDFKAYHQPRPSF 239 Query: 241 ---------LEGDIVHL--NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSS 288 L I + +G+ +G+H G +TIGQ +GLG+ E F++ D + Sbjct: 240 SNKYEELKYLSKKITYQKSDGKSIGKHQGAQFFTIGQSKGLGIGGHKESCFIISRDVKEN 299 Query: 289 RVIVGPRESL-----EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR 343 + VG ++ +V +I +I+W+ + L E + + +IR Q + + Sbjct: 300 LIFVGEGKNFPGLFQKVIKIEPNDIHWVREDL-ELKNNETMEVMARIRYRQPLEKATLHK 358 Query: 344 NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 +DG+Y++FE + VA GQ +Y D ++G G+IS Sbjct: 359 YEDGLYIEFENPQSAVAEGQFAAWYLED----ELVGSGVIS 395 >gi|293609749|ref|ZP_06692051.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828201|gb|EFF86564.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 377 Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 123/374 (32%), Positives = 198/374 (52%), Gaps = 23/374 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ V D Sbjct: 4 RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTEY---CTAMEDLADAQAVAD 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F + YAAG TP P + CN+ +KF L LGAD + Sbjct: 61 KIGIKLHTANFAMEYWDRVFELFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGADFI 120 Query: 142 ATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY R G+ + R +D +DQ+YFL A +++ FP+G+++K V Sbjct: 121 ATGHYARRGETAYNSKGEAYAPLLRGVDNNKDQTYFLHAVHGREINKTLFPVGEIEKPEV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+ L A K DS ICF+ + ++ D +K+ A G IV G+ +G H+G++ Sbjct: 181 RRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDTGKEVGEHHGLM 238 Query: 261 NYT-----IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312 YT GL A FV++ D ++R++VG ++ +++ I+W+ Sbjct: 239 YYTLGQRGGIGLGGLKGAAEGAWFVLHKDLANNRLVVGQGHEHPLMQSTQLWSESIDWVA 298 Query: 313 DGLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYT 369 ++ V+G +C K R Q +F+ N + GV V+F++ + V GQ+ VFY+ Sbjct: 299 GE--QNIPVEGLRCTAKTRYRQPDQTCTIFIDENTEHGVRVEFDEPQRAVTPGQSVVFYS 356 Query: 370 SDSNEARVLGGGII 383 + LGGG+I Sbjct: 357 DEV----CLGGGVI 366 >gi|325122971|gb|ADY82494.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter calcoaceticus PHEA-2] Length = 377 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 123/374 (32%), Positives = 198/374 (52%), Gaps = 23/374 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ V D Sbjct: 4 RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTEY---CTAMEDLADAQAVAD 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F + YAAG TP P + CN+ +KF L LGAD + Sbjct: 61 KIGIKLHTANFAMEYWDRVFELFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGADFI 120 Query: 142 ATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY R G+ + R +D +DQ+YFL A +++ FP+G+++K V Sbjct: 121 ATGHYARRGETAYNSKGEAYAPLLRGVDNNKDQTYFLHAVHGREINKTLFPVGEIEKPEV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+ L A K DS ICF+ + ++ D +K+ A G IV G+ +G H+G++ Sbjct: 181 RRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDTGKEVGEHHGLM 238 Query: 261 NYT-----IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312 YT GL A FV++ D ++R++VG ++ +++ I+W+ Sbjct: 239 YYTLGQRGGIGLGGLKGAAEGAWFVLHKDLANNRLVVGQGHEHPLMQSTQLWSESIDWVA 298 Query: 313 DGLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYT 369 ++ V+G +C K R Q +F+ N + GV V+F++ + V GQ+ VFY+ Sbjct: 299 GE--QNIPVEGLRCTAKTRYRQPDQACTIFIDENTEHGVRVEFDEPQRAVTPGQSVVFYS 356 Query: 370 SDSNEARVLGGGII 383 + LGGG+I Sbjct: 357 DEV----CLGGGVI 366 >gi|169834334|ref|YP_001693654.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae Hungary19A-6] gi|205828976|sp|B1I833|MNMA_STRPI RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|168996836|gb|ACA37448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae Hungary19A-6] Length = 373 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 140/385 (36%), Positives = 196/385 (50%), Gaps = 37/385 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS ICF+ + + +++ N A G ++ ++G+ +G H G++ Sbjct: 181 RLAEEAGLATAKKKDSTGICFIGEKNFKNLLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYL-RE 307 YTIGQR GLG+ P FVV D + + + VG SLE +++ RE Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRE 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 + E+ ++ C K R Q V V D V F + + + GQA VF Sbjct: 299 MP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVF 348 Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392 Y + LGGG+I + R V Sbjct: 349 YDGE----ECLGGGLIDNAYRDGQV 369 >gi|237711510|ref|ZP_04541991.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 9_1_42FAA] gi|237726033|ref|ZP_04556514.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. D4] gi|265752935|ref|ZP_06088504.1| tRNA methyl transferase [Bacteroides sp. 3_1_33FAA] gi|229435841|gb|EEO45918.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides dorei 5_1_36/D4] gi|229454205|gb|EEO59926.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 9_1_42FAA] gi|263236121|gb|EEZ21616.1| tRNA methyl transferase [Bacteroides sp. 3_1_33FAA] Length = 351 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 121/363 (33%), Positives = 183/363 (50%), Gaps = 22/363 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++ MSGG DSSV A LL+ GY+V G+T + Y KG+ + + DAR +C+ Sbjct: 9 KVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFYE-------KGN--DTEYLEDARTLCE 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H +D FR +I F + Y AG TP+PC CN +K+ L ++ ++G Sbjct: 60 RLGIPHLTYDVRGTFRKTIIDYFINEYMAGHTPVPCTLCNNYLKWPLLKRISDEMGIYHF 119 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R RL G + D ++DQS+FL+ Q+ L + P+G++ K VR Sbjct: 120 ATGHYVRRRLING-----YYHITTGADPDKDQSFFLWGLPQEILQRMLLPMGNLTKARVR 174 Query: 202 DLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 ++A E G L A K DS +CF + K + G L G G + RH G Sbjct: 175 EIAAERGFLKAAHKRDSLGVCFCPMDYRTFLHKELPEGSILPGKFFDEMGNFIARHKGYP 234 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQRRGLG+ + +FV + ++VI+ ++LE + L+E L + Sbjct: 235 FYTIGQRRGLGIDLNRAVFVKEIIPAENKVILSDLKALEKTEMRLKEWRITNPALLLNK- 293 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 D ++ R + V +Q D+ ++V + +A GQA FY D VLGG Sbjct: 294 -DDIIVKIRYRKQANRCTVTLQ-PDNTLHVQLHEPLTAIAPGQAAAFYRDDV----VLGG 347 Query: 381 GII 383 GII Sbjct: 348 GII 350 >gi|328953724|ref|YP_004371058.1| tRNA-specific 2-thiouridylase mnmA [Desulfobacca acetoxidans DSM 11109] gi|328454048|gb|AEB09877.1| tRNA-specific 2-thiouridylase mnmA [Desulfobacca acetoxidans DSM 11109] Length = 351 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 119/365 (32%), Positives = 190/365 (52%), Gaps = 28/365 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV VA+SGG+DS+V AALL G++V GV L L + K++ D+ +C Sbjct: 7 RVAVALSGGLDSTVAAALLLNQGFEVQGVHLTL--TEKSA----------DISGIESLCQ 54 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + ++++ D F+ +I FA+ Y G TP PCV CN +KF L R G D L Sbjct: 55 FLGIAYFQLDLRREFKARIIADFAAQYRLGLTPNPCVRCNELIKFGFLFQAVRSQGFDYL 114 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +R+ +G + + +D +++QSYFL + L + PLG + K VR Sbjct: 115 ATGHY--ARVEAAPNGMMG--LWQGVDPDKEQSYFLHRLSPDCLPAVLLPLGRLTKSQVR 170 Query: 202 DLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRIN-AGIALEGDIVHLNGQILGRHNGI 259 + + GL +SQ++CF+ G Y D ++ ++ G+ G IV+ G++LG H G+ Sbjct: 171 EKSLAWGLAQYLPNRESQELCFIPDGDYIDFMRNMDVTGLDRPGPIVNRRGEVLGTHRGV 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YT+GQR+GLG+ P +V+ + +R++VG + L + + +INW F Sbjct: 231 EHYTVGQRQGLGLPGPAPSYVLEIIPAGNRLVVGCKADLLADELLVEDINW-----FIPV 285 Query: 320 VVDGFKCFVKIRSSQD-PVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 ++ + VKIR + + + V V F+ + + GQA VFY + R+L Sbjct: 286 PLEPLRARVKIRYRHPGATAIILPLDRRRVRVRFDLPQTAITPGQAAVFYQDN----RLL 341 Query: 379 GGGII 383 GGG I Sbjct: 342 GGGWI 346 >gi|325698055|gb|EGD39936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis SK160] Length = 373 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 136/380 (35%), Positives = 199/380 (52%), Gaps = 25/380 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V Sbjct: 7 IRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDVAAVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I +S+Y ++E+ + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 64 DQIGISYYSVNFEKEYWERVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K V Sbjct: 124 VATGHYAQ----VKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A GL A K DS ICF+ + + + + + A G ++ L G+ +G+H G++ Sbjct: 180 RAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQHAGLM 237 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YTIGQR GLG+ EP FVV D + + + VG ++L + ++++ Sbjct: 238 YYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHFTK 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + + E+ ++ C K R Q V V D V+F++ + V GQA VFY D Sbjct: 298 E-MPEEFTIE---CTAKFRYRQPDSKVTVTVKGDKAVVNFDQPQRAVTPGQAVVFYDGD- 352 Query: 373 NEARVLGGGIISGSKRSDAV 392 LGGG+I + ++ V Sbjct: 353 ---ECLGGGLIDRAYKNGQV 369 >gi|158521761|ref|YP_001529631.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfococcus oleovorans Hxd3] gi|205816872|sp|A9A0S9|MNMA_DESOH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|158510587|gb|ABW67554.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfococcus oleovorans Hxd3] Length = 358 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 124/376 (32%), Positives = 187/376 (49%), Gaps = 28/376 (7%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LN L+ + + + V +SGG+DS V A LLK+ G DV + + R G Sbjct: 7 LNPWPLESS--NPLIAVLVSGGIDSLVAAHLLKQSGADVTAI--HFLTGYEPEDRAGRL- 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 ++ +++ ++FD F++ V+ F ++Y GETP PC+ CN +KF Sbjct: 62 --------EKLFTQMDIPVFIFDCRTVFQSNVVDYFTAAYLRGETPNPCMVCNSRIKFGA 113 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 + R LGAD +ATGHY R+ DG R + + D ++QSYFL +Q QL Sbjct: 114 CMDYARSLGADAVATGHYCRTTK--DPDGVR---LWKGADPAKEQSYFLAFLSQDQLGRA 168 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPL M K+ VR A GL + +SQD+CF++ + D ++ I G I + Sbjct: 169 RFPLERMTKDQVRAHAARHGLVPIESKESQDVCFIRGEECADFIEAQVPAIPGPGPIEDM 228 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 G+++G H+G+ +T+GQRRG+ +P +V LD + + VG R+ L V + ++ Sbjct: 229 TGRLIGTHSGLHRFTVGQRRGINCPAEQPYYVAALDMARNCLKVGFRQDLFVPVCRVAQV 288 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVF 367 NW+ D VKIR +Q VP + V+F + VA GQ VF Sbjct: 289 NWI-----PDRPKGSMNVSVKIRYNQTEVPARLTALGETDAVVEFVTPQFAVAPGQGAVF 343 Query: 368 YTSDSNEARVLGGGII 383 Y D+ VLGGGII Sbjct: 344 YDGDA----VLGGGII 355 >gi|148983522|ref|ZP_01816841.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP3-BS71] gi|221231050|ref|YP_002510202.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae ATCC 700669] gi|254811464|sp|B8ZK04|MNMA_STRPJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|147923669|gb|EDK74781.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP3-BS71] gi|220673510|emb|CAR67990.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae ATCC 700669] gi|301799298|emb|CBW31824.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae OXC141] Length = 373 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 140/385 (36%), Positives = 195/385 (50%), Gaps = 37/385 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G++ Sbjct: 181 KLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYL-RE 307 YTIGQR GLG+ P FVV D + + + VG SLE +++ RE Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRE 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 + E+ ++ C K R Q V V D V F + + + GQA VF Sbjct: 299 MP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVF 348 Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392 Y + LGGG+I + R V Sbjct: 349 YDGE----ECLGGGLIDNAYRDGQV 369 >gi|331267205|ref|YP_004326835.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus oralis Uo5] gi|326683877|emb|CBZ01495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus oralis Uo5] Length = 373 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 140/385 (36%), Positives = 195/385 (50%), Gaps = 37/385 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G++ Sbjct: 181 KLAEEAGLATAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYL-RE 307 YTIGQR GLG+ P FVV D + + + VG SLE +++ RE Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRE 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 + E+ ++ C K R Q V V D V F + + + GQA VF Sbjct: 299 MP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVF 348 Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392 Y + LGGG+I + R V Sbjct: 349 YDGE----ECLGGGLIDNAYRDGQV 369 >gi|261367050|ref|ZP_05979933.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Subdoligranulum variabile DSM 15176] gi|282571170|gb|EFB76705.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Subdoligranulum variabile DSM 15176] Length = 348 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 125/366 (34%), Positives = 176/366 (48%), Gaps = 29/366 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +V++ MSGGVDSSV +L+ G+ V G + R + G+ A Q+ Sbjct: 9 KQYKVLMGMSGGVDSSVAVRILQEQGFAVQGAVI-----RFSPAHDGAVSAAQES----- 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 T+ + ++ D + F VI+PF SY AG TP PC+ CN VKF L +LG Sbjct: 59 -AKTLQIPLHIIDARDAFEQHVILPFCESYCAGMTPNPCILCNPLVKFRLLAEKANELGC 117 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R + D K + P RDQSY L+ Q+ L L PLG+ +K+ Sbjct: 118 QFIATGHYARVEV----DHKGVSRIAVPQSTARDQSYMLYRLPQEILSKLILPLGEFEKD 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++AR++ L AD DS +ICF+ G Y + R G + G+ LG H G Sbjct: 174 DIREMARDIHLACADAPDSMEICFIPDGDYAAYI-RSRGFSPKTGRFIGPQGEDLGPHAG 232 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 + +YT+GQR+GLG+A G PLFV + +N G + E + Y I + Sbjct: 233 VDHYTVGQRKGLGIAAGRPLFVKAILEN------GDIQLAETGQEYSTHITLCDLTTPDG 286 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + VKIRS+ P P D V F A GQ+ VFY + V Sbjct: 287 QPLPAGDYLVKIRSAAKPSPCLY---DGAGAVRFPDPVRAPAPGQSAVFY----RDGLVF 339 Query: 379 GGGIIS 384 GGGII+ Sbjct: 340 GGGIIA 345 >gi|328957187|ref|YP_004374573.1| tRNA-specific 2-thiouridylase MnmA [Carnobacterium sp. 17-4] gi|328673511|gb|AEB29557.1| tRNA-specific 2-thiouridylase MnmA [Carnobacterium sp. 17-4] Length = 362 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 128/369 (34%), Positives = 195/369 (52%), Gaps = 26/369 (7%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A +LK+ GYDV+G+ ++ ++ + G C A +D D V + I + Sbjct: 1 MSGGVDSSVTALVLKQQGYDVVGIFMKNWDD---TDEFGVCTATEDYNDVALVANQIGIP 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 +Y ++E+++ + V F Y G TP P V CN+ +KF L +LGAD +ATGHY Sbjct: 58 YYSINFEKQYWDKVFTYFLEEYKKGRTPNPDVMCNKEIKFKAFLDYAIELGADYVATGHY 117 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 + V D M R +D +DQ+YFL +Q+QL FPLG M+K VR +A E Sbjct: 118 AQ----VERDENGVTHMLRGLDNNKDQTYFLNQLSQEQLAKTLFPLGGMQKSEVRKIAEE 173 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 GL A K DS +CF+ + + + + A G ++ ++G++ G+H+G++ YTIGQ Sbjct: 174 AGLATAKKKDSTGVCFIGERDFKKFL--MTYLPAQPGSMMTVDGEVKGQHDGLMYYTIGQ 231 Query: 267 RRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDA 319 R+GLG+ +P FVV D ++ + VG E L + ++++ + + Sbjct: 232 RQGLGIGGGGKSSDPWFVVGKDLETNTLYVGQGFNHEWLLATHLEASDLHFTTN----EE 287 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGV--YVDFEKSEVGVASGQACVFYTSDSNEARV 377 FKC K R Q V VQ N+DG V+F++ + GQA VFY + Sbjct: 288 KPRTFKCTAKFRYRQADTGVTVQLNEDGTAATVEFDEPVRAITPGQAVVFY----DGLEC 343 Query: 378 LGGGIISGS 386 LGGG I + Sbjct: 344 LGGGTIDAA 352 >gi|325281986|ref|YP_004254528.1| tRNA-specific 2-thiouridylase mnmA [Odoribacter splanchnicus DSM 20712] gi|324313795|gb|ADY34348.1| tRNA-specific 2-thiouridylase mnmA [Odoribacter splanchnicus DSM 20712] Length = 349 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 124/365 (33%), Positives = 188/365 (51%), Gaps = 29/365 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV MSGGVDS V A LL+R GY+VIGVTL+L+ D+ R C+ Sbjct: 3 KVVVGMSGGVDSFVTALLLRRQGYEVIGVTLELWEK-------------NDLSGVRDSCE 49 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +N+ + E FR V+ PF +Y +G TP PC CNR VK+ L V +LG + + Sbjct: 50 KLNIPFLCREGHELFRQQVVDPFVKAYRSGLTPSPCCICNRRVKWILLQQVADELGVEYI 109 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R G R + + +D ++DQSYFL+ Q L PLG+ K+ V+ Sbjct: 110 ATGHYVRIAEREG-----RFYIRKGIDPQKDQSYFLWGLPQALLRRALTPLGEYTKKQVK 164 Query: 202 DLAREMGLD-IADKSDSQDICFVQQGKYFDVVK--RINAGIALEGDIVHLNGQILGRHNG 258 + A G + +A + +S ICF++ Y D +K I G+I+ G++LG H G Sbjct: 165 EWAARNGYEQMARRRESMGICFLKNKDYRDFIKDYPIKDFRQESGEIIDDKGRVLGVHAG 224 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I+NYT+GQ+RG+ G P++V +D + +IV P+ L + + ++ + F D Sbjct: 225 ILNYTVGQKRGIPDRTGVPMYVREIDVERNSIIVAPKSGLYTSVLTVGQVEAV---YFGD 281 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + DG + ++ + +R + D + V + VA GQ FY D + Sbjct: 282 LLADGVEIKIRGLGLNPRGNIRAERLSPDRLKVVLSEPAWAVAPGQPVAFYHEDI----L 337 Query: 378 LGGGI 382 LGGGI Sbjct: 338 LGGGI 342 >gi|161833715|ref|YP_001597911.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Sulcia muelleri GWSS] gi|205828995|sp|A8Z5W4|MNMA_SULMW RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|152206205|gb|ABS30515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Sulcia muelleri GWSS] Length = 380 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 125/396 (31%), Positives = 197/396 (49%), Gaps = 45/396 (11%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N K RV+V MSGGVDSSV A LLK+ GYDVIG+ ++ YN C +D DA Sbjct: 2 NVKRKRVIVGMSGGVDSSVAALLLKKQGYDVIGIFMKYYNF--------ECPWREDSIDA 53 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V ++ + Y+ D + ++N +I Y G TP P + CN +KF L + L Sbjct: 54 MLVSQSLKIPFYIIDITKNYKNLIIDYLYKEYKKGYTPNPDIICNSKIKFKFFLEKSIFL 113 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 +D +ATGHY+R + + ++GK + +D +DQSYFL + Q+ FPLG + Sbjct: 114 KSDFIATGHYVRKKE-INENGKISYKIISGIDSNKDQSYFLCKLNKVQIKKSIFPLGWLN 172 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN------- 249 K+ VR++A + L A+K DSQ ICF+ + K+ + +K+ A +G I+ +N Sbjct: 173 KKEVREIANKYNLINANKKDSQGICFIGKIKFLNFLKKKLA--EKKGIIIEINKNSHIFK 230 Query: 250 -----------------GQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVI 291 G+I+G H G +T GQR+GL + PLFV+ D + + Sbjct: 231 YKQKKLFSKKIEYKKEYGKIIGHHIGAHYFTKGQRKGLKIGGYKYPLFVIEKDITKNILY 290 Query: 292 VG---PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV 348 VG L I +++ N + +C ++ R + ++ + ND + Sbjct: 291 VGMGKNHPGLYTKVICIKKYNIHWINKKKIKTKIEVECRIRYRQNFKKATLYKKNND--L 348 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 YV+FE ++ V GQ V+Y ++ V+G G+IS Sbjct: 349 YVEFEIPQLAVNGGQFIVWYINNE----VIGSGLIS 380 >gi|326567524|gb|EGE17639.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis BC1] Length = 392 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 136/389 (34%), Positives = 207/389 (53%), Gaps = 34/389 (8%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K KD++V+V MSGGVDSSV A LL++ G+ V G+ ++ + SK C A D+ D Sbjct: 15 KALKDIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSKY---CTAMTDLAD 71 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ V D I + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 72 AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131 Query: 136 ----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R DGK + + R +D +DQSYFL A ++ FP Sbjct: 132 SQFGLGADFIATGHYARRGF--SQDGKAQ--LLRGLDANKDQSYFLHAVGGDKIAKTLFP 187 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 +G+++K VR +A++ L A+K DS ICF+ + K+ D +++ A +GDI +G Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 +G H+G++ YTIGQR G+G+ EP FV++ D ++R+IVG L+ + Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSDEL 305 Query: 304 YLREINWLGDGLFEDAVV---DGFKCFVKIR---SSQDPVPVFVQRNDDGVYVDFEKSEV 357 +++W G+ A + GF+C K R S QD + D V V F+ ++ Sbjct: 306 TAYKLDW---GIAPPAQIFGKQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFDDAQR 362 Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGS 386 V GQ+ VFY D LGGG+I G+ Sbjct: 363 AVTQGQSVVFYDGDI----CLGGGVIDGT 387 >gi|146319824|ref|YP_001199536.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis 05ZYH33] gi|253752800|ref|YP_003025941.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus suis SC84] gi|253754625|ref|YP_003027766.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus suis P1/7] gi|253756558|ref|YP_003029698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus suis BM407] gi|205828994|sp|A4VYE7|MNMA_STRSY RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205829102|sp|A4W4N7|MNMA_STRS2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|145690630|gb|ABP91136.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Streptococcus suis 05ZYH33] gi|251817089|emb|CAZ52741.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus suis SC84] gi|251819022|emb|CAZ56869.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus suis BM407] gi|251820871|emb|CAR47637.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus suis P1/7] Length = 374 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 136/370 (36%), Positives = 198/370 (53%), Gaps = 25/370 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 9 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDYKDVAAVAD 65 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 66 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMNLGADYV 125 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +++ +DG M R D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 126 ATGHY--AQVTRDEDGTVH--MLRGADNGKDQTYFLSQLSQEQLQKTMFPLGHLQKPQVR 181 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A GL A K DS ICF+ + + + + + A G ++ ++G+ +G H G++ Sbjct: 182 EIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLP--AQPGRMMTVDGRDMGEHTGLMY 239 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ EP FVV D + + + VG ESL + ++++ D Sbjct: 240 YTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVGQGFYHESLMSTSLQASQVHFTRD 299 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ C K R Q V V+ D V F + + + GQA VFY D Sbjct: 300 -MPEEFTLE---CTAKFRYRQPDSQVTVKVKGDKAEVIFAEPQRAITPGQAVVFY--DGQ 353 Query: 374 EARVLGGGII 383 E LGGG+I Sbjct: 354 EC--LGGGMI 361 >gi|15618353|ref|NP_224638.1| tRNA-specific 2-thiouridylase MnmA [Chlamydophila pneumoniae CWL029] gi|15835971|ref|NP_300495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydophila pneumoniae J138] gi|16752601|ref|NP_444864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydophila pneumoniae AR39] gi|33241787|ref|NP_876728.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydophila pneumoniae TW-183] gi|6647887|sp|Q9Z8A5|MNMA_CHLPN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|4376720|gb|AAD18582.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae CWL029] gi|7189243|gb|AAF38171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydophila pneumoniae AR39] gi|8978810|dbj|BAA98646.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae J138] gi|33236296|gb|AAP98385.1| putative p-loop ATPase [Chlamydophila pneumoniae TW-183] Length = 361 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 125/368 (33%), Positives = 187/368 (50%), Gaps = 27/368 (7%) Query: 23 VVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 V+VAMSGGVDSSVVA L K+ Y VIG+ ++ + + G C + +D D RVC Sbjct: 5 VIVAMSGGVDSSVVAYLFKKFTNYKVIGLFMKNW---EEDSEGGLCSSTKDYEDVERVCL 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +Y + + +R V F Y+ G TP P + CNR +KF L ++LG D L Sbjct: 62 QLDIPYYTVSFAKEYRERVFARFLKEYSLGYTPNPDILCNREIKFDLLQKKVQELGGDYL 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + + + R D ++DQSYFL T + L ++ FPLG+M K VR Sbjct: 122 ATGHYCRLNTEL-----QETQLLRGCDPQKDQSYFLSGTPKSALHNVLFPLGEMNKTEVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHNGII 260 +A + L A+K DS ICF+ + + + +++ G+++ + +I+G+H G Sbjct: 177 AIAAQAALPTAEKKDSTGICFIGKRPFKEFLEKFLPNKT--GNVIDWDTKEIVGQHQGAH 234 Query: 261 NYTIGQRRGLGVAMGE-PLFVV--YLDKNSSRVIVGP-RESLEVHRIYLREINWLGDGLF 316 YTIGQRRGL + E P +VV +++NS ++ G L + + RE+NW Sbjct: 235 YYTIGQRRGLDLGGSEKPCYVVGKNIEENSIYIVRGEDHPQLYLRELTARELNWF----- 289 Query: 317 EDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 G C K+R S D + D V V F + V GQ FY D+ Sbjct: 290 -TPPKSGCHCSAKVRYRSPDEACTIDYSSGDEVKVRFSQPVKAVTPGQTIAFYQGDT--- 345 Query: 376 RVLGGGII 383 LG G+I Sbjct: 346 -CLGSGVI 352 >gi|307244970|ref|ZP_07527067.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253923|ref|ZP_07535775.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258377|ref|ZP_07540118.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306854135|gb|EFM86343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863127|gb|EFM95069.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867561|gb|EFM99408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 389 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 125/387 (32%), Positives = 213/387 (55%), Gaps = 29/387 (7%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +L + L +N K +V++ MSGGVDSSV A +L++ GY V G+ ++ + + C Sbjct: 18 KLTAEQLAENAKK-KVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 73 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 A D+ DA+ V D +++ + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 74 TAAADLADAQAVADKLDMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKEIKFK 133 Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L + LGAD +ATGHY+R GDD + + R +D +DQSYFL+ + +Q+ Sbjct: 134 AFLEYAAEDLGADYIATGHYVRRS---GDDNNAQ--LLRGLDANKDQSYFLYTLSHKQVG 188 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 FP+GD++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 189 QSLFPVGDIEKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQPGEIR 246 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298 ++G+++GRH+G++ +T+GQR+GLG+ +P +VV D ++ ++V +L Sbjct: 247 TVDGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHDNSAL 306 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + +++W+ + + +C VK R Q + +Q +DD + V F++ ++ Sbjct: 307 LSSGLIATQLHWVD----RQPIRENLRCTVKTRYRQTDIACEIQPIDDDTIRVIFDEPQI 362 Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGG+I Sbjct: 363 AVTPGQSAVFYQGEV----CLGGGVIE 385 >gi|330723585|gb|AEC45955.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma hyorhinis MCLD] Length = 370 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 123/369 (33%), Positives = 190/369 (51%), Gaps = 39/369 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 +VV+ MSGGVDSSV A LLK+ GY+VIGV ++ ++S + KG+ C +D Sbjct: 3 KVVIGMSGGVDSSVAAYLLKQQGYEVIGVFMRNWDSTLNNDIKGNDSYNDFICPQEKDWQ 62 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133 DA+ VC +N+ Y D+ + + V F Y +G+TP P + CN+ +KF L Sbjct: 63 DAQEVCKKLNIPIYRVDFIKEYWEEVFEDFIEKYKSGKTPNPDILCNKNIKFKHFLDYAL 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + D +A GHY ++ ++GK + + DL +DQSYFL QL FPL Sbjct: 123 KTFNVDFIAMGHYAKT-----ENGK----LFKAKDLTKDQSYFLAQLNNYQLSKTIFPLA 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQI 252 ++ K VR +A E+ L +K DS ICF+ + K+ D ++ N A GDIV ++ + Sbjct: 174 NITKTEVRKIATELDLITQNKKDSTGICFIGERKFTDFLQ--NYIPAQPGDIVDISKNKK 231 Query: 253 LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 +G+H GI+ +T+GQR+GLG+ M +P FVV + + V P+ + WL Sbjct: 232 IGKHIGIMYFTLGQRKGLGLNGMDQPYFVVGHNLEQKILYVAPQNQEQ----------WL 281 Query: 312 ----GDGLFEDAVVDGF---KCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQ 363 DG+ + + F K VK R Q+ +P +Q D+ + V++ + V GQ Sbjct: 282 ISDKADGINLNLIETNFDPNKLSVKFRYRQEDIPAKIQILDNAKIVVEYPQGFKAVTPGQ 341 Query: 364 ACVFYTSDS 372 V Y D Sbjct: 342 EVVIYQEDK 350 >gi|312864108|ref|ZP_07724343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus vestibularis F0396] gi|322515817|ref|ZP_08068761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus vestibularis ATCC 49124] gi|311100340|gb|EFQ58548.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus vestibularis F0396] gi|322125703|gb|EFX97025.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus vestibularis ATCC 49124] Length = 373 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 139/380 (36%), Positives = 201/380 (52%), Gaps = 25/380 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V Sbjct: 7 IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 64 DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY +++ +DG M R D +DQ+YFL +Q+QL FPLG ++K V Sbjct: 124 VATGHY--AQVVRDEDGIVH--MLRGADNNKDQTYFLSQLSQEQLQKTMFPLGHLQKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A +GL A K DS ICF+ + + + + + A +G ++ ++G+ +G HNG++ Sbjct: 180 REIAERVGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEHNGLM 237 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YTIGQR G+G+ P FVV D + + + VG ESL + I++ Sbjct: 238 YYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDASMIHFTR 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 D E + +C K R Q V V+ D V F + + + GQA VFY D Sbjct: 298 DMPEEFEM----ECTAKFRYRQPDSKVTVKVKGDKAEVIFAEPQRAITPGQAVVFY--DG 351 Query: 373 NEARVLGGGIISGSKRSDAV 392 E LGGGII + + V Sbjct: 352 QEC--LGGGIIDQAYKDGKV 369 >gi|253570358|ref|ZP_04847767.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 1_1_6] gi|205814939|sp|Q8A0Y3|MNMA3_BACTN RecName: Full=tRNA-specific 2-thiouridylase mnmA 3 gi|251840739|gb|EES68821.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 1_1_6] Length = 362 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 127/387 (32%), Positives = 191/387 (49%), Gaps = 59/387 (15%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV+V MSGG+DS+ +L+ GY+++GVT++++ G + DAR Sbjct: 4 RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + HYV D F+ ++ F Y G TP PCV CN KF L +L Sbjct: 50 LAARMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLAEWADKLDC 109 Query: 139 DVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 +ATGHY R +Y+ GDD K +DQSYFL+ Q L FP Sbjct: 110 AYIATGHYSRLEERSGHIYIVAGDDDK------------KDQSYFLWRLGQDILKRCIFP 157 Query: 192 LGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVH 247 LGD K VR+ E G + K +S ++CF+ QG Y D ++ + E G V+ Sbjct: 158 LGDYTKIKVREYLAEKGYEAKSKEGESMEVCFI-QGDYRDFLREQCPELDTEIGPGWFVN 216 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 G LG+H G YTIGQR+GL +A+G+P +V+ ++ + V++G E L+ + Sbjct: 217 SEGVKLGQHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLQTEYMLAE- 275 Query: 308 INWLGDGLFEDAVVDGFKCF------VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360 +D +VD + F V+IR P+P V+R +DG + V F ++ VA Sbjct: 276 ---------QDRIVDEQELFSCENLAVRIRYRSRPIPCRVKRLEDGRLLVRFRETASAVA 326 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSK 387 GQ+ VFY RVLGG I+ + Sbjct: 327 PGQSAVFYDG----RRVLGGAFIASQR 349 >gi|326565359|gb|EGE15537.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis 12P80B1] Length = 392 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 135/389 (34%), Positives = 206/389 (52%), Gaps = 34/389 (8%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K PKD++V+V MSGGVDSSV A LL++ G+ V G+ ++ + S+ C A D+ D Sbjct: 15 KAPKDIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSEY---CTAMTDLAD 71 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ V D I + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 72 AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131 Query: 136 ----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R DGK + + R +D +DQSYFL A ++ FP Sbjct: 132 PQFGLGADFIATGHYARRGF--SQDGKAQ--LLRGLDANKDQSYFLHAVGGDKIAKTLFP 187 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 +G+++K VR +A++ L A+K DS ICF+ + K+ D +++ A +GDI +G Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 +G H+G++ YTIGQR G+G+ EP FV++ D ++R+IVG L+ + Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSDEL 305 Query: 304 YLREINWLGDGLFEDAVV---DGFKCFVKIR---SSQDPVPVFVQRNDDGVYVDFEKSEV 357 +++W G+ + GF+C K R S QD + D V V F ++ Sbjct: 306 TAYKLDW---GIAPPVQIFGKQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFGDAQR 362 Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGS 386 V GQ+ VFY D LGGG+I G+ Sbjct: 363 AVTQGQSVVFYDGDI----CLGGGVIDGT 387 >gi|296875545|ref|ZP_06899617.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus parasanguinis ATCC 15912] gi|296433469|gb|EFH19244.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus parasanguinis ATCC 15912] Length = 373 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 138/379 (36%), Positives = 202/379 (53%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +++ +DG M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHY--AQVVRDEDGIVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G++ Sbjct: 181 RLAEEAGLATAKKKDSTGICFIGEKNFKEFLG--NYLPAQPGRMMTIDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ P FVV D + + + VG E+L + ++++ + Sbjct: 239 YTIGQRGGLGIGGQQGGDNAPWFVVGKDLSQNILYVGQGFYHEALMSTSLQSSQVHFTRE 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ C K R Q V V+ D V F + + + GQA VFY D Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVKVKGDKAEVIFAEPQRAITPGQAVVFY--DGQ 352 Query: 374 EARVLGGGIISGSKRSDAV 392 E LGGGII + + V Sbjct: 353 EC--LGGGIIDQAYKDGKV 369 >gi|254499186|ref|ZP_05111866.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase [Legionella drancourtii LLAP12] gi|254351576|gb|EET10431.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase [Legionella drancourtii LLAP12] Length = 361 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 126/371 (33%), Positives = 196/371 (52%), Gaps = 27/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +++V MSGGVDSSV A LLK GY+V G+ ++ + G C A QD+ DA+ VC+ Sbjct: 4 KIIVGMSGGVDSSVAAWLLKEQGYEVEGLFMKNWEQDDTD---GFCPAAQDLADAQAVCN 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +N+ + ++ E++ V + F S Y G TP P V CN+ +KF+ L+ LGAD + Sbjct: 61 QLNIPLHSVNFSEQYWERVFMHFLSEYEKGRTPNPDVLCNKEIKFNAFLNYALDLGADYI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY ++++ + + D ++DQ+YFL A L FP+GD K +R Sbjct: 121 ATGHYAKNKI-----SNNIGHLLKAKDRDKDQTYFLHAVDPAALAKTLFPIGDYTKPEIR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 + A+++GL K DS ICF+ + ++ +K +A G+I +++G +LG+H+G++ Sbjct: 176 EFAKQLGLVTQAKKDSTGICFIGEKRFKTFLKEFI--LAKPGEIKNMDGSVLGKHDGLMF 233 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRES-LEVHRIYLREINWLGD 313 YT+GQR+GLG+ + +P +VV D N+ V G + L + I+WL D Sbjct: 234 YTLGQRQGLGIGGTQNSTEDPWYVVDKDVATNTLYVAQGSQHPMLYAQGLICGPIHWLAD 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDS 372 +D + C+ K R Q + D D YV F + V GQ VFY D Sbjct: 294 --CKDNLP--LTCYAKTRYRQAEQGCMISPPDGDLHYVMFSSPQRAVTPGQYIVFY--DK 347 Query: 373 NEARVLGGGII 383 N+ LGG I Sbjct: 348 NQC--LGGATI 356 >gi|71892171|ref|YP_277903.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123640946|sp|Q492R5|MNMA_BLOPB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71796277|gb|AAZ41028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 367 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 118/379 (31%), Positives = 197/379 (51%), Gaps = 40/379 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + ++++ C + D+ D VCD Sbjct: 8 KVIVGMSGGVDSSVSAWLLQQQGYKVEGLFMKNWEDDDSTEQ---CASASDLSDTHSVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y+ G TP P + CN+ +KF L Q L AD+ Sbjct: 65 NLGIYLHTINFSKEYWENVFQVFLQEYSVGRTPNPDILCNKEIKFKYFLEFALQDLDADL 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R D ++ + R +D +DQSYFL+ + +QL FP+G + K V Sbjct: 125 IATGHYVRRV-----DMNKKTYLIRGVDRNKDQSYFLYTLSYKQLKQCLFPVGTLNKFQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR---INAGIALEGDIVHLNGQILGRHN 257 R++A+++ L A+K DS ICF+ + K+ D + + I G+ I+ +NG +G H Sbjct: 180 RNIAKKLNLITANKKDSTGICFIGKRKFKDFISKYIPIRPGV-----IIDINGNTIGAHQ 234 Query: 258 GIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLRE 307 G+ YT+GQR+GL + G+P +V+ D +++ +I PR L + Sbjct: 235 GVSFYTLGQRKGLKIGGVKQGNGQPWYVIDKDTSNNTLIAAQGRNHPR--LMSIAFITEQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPV--PVFVQRNDDGVYVDFEKSEVGVASGQAC 365 W+ DA+ C VK R + ++ N++ + V + + + GQ+ Sbjct: 293 TQWVK----RDALTSPLHCTVKTRYRHPDIQCQIYPLLNNN-LKVILKIPVLAITPGQSA 347 Query: 366 VFYTSDSNEARVLGGGIIS 384 VFY + R LGGGII+ Sbjct: 348 VFYLKE----RCLGGGIIT 362 >gi|330684725|gb|EGG96422.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis VCU121] Length = 336 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 120/340 (35%), Positives = 175/340 (51%), Gaps = 41/340 (12%) Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + G C A +D D VC+ I + +Y ++E+ + + V F Y G TP P V C Sbjct: 7 TDENGVCTATEDYNDVIAVCNQIGIPYYAVNFEQEYWDKVFTYFLDEYKKGRTPNPDVMC 66 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N+ +KF L +LGAD +ATGHY R R + +DG M R +D +DQ+YFL Sbjct: 67 NKEIKFKAFLEHALKLGADYVATGHYARIRRH--EDGHVE--MLRGIDNNKDQTYFLNQL 122 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 +QQQL + FP+GD+ K+ VR +A E L A K DS ICF+ + + + + A Sbjct: 123 SQQQLSKVMFPIGDIDKKRVRQIAEEQDLATAKKKDSTGICFIGERNFKTFLSQYLP--A 180 Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLE 299 GD+V L+G+ +G H+G++ YTIGQR GLG+ G+P FVV ++LE Sbjct: 181 QSGDMVTLDGKKMGVHSGLMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLE 227 Query: 300 VHRIYLREINWLGDGLFEDAVV---------------DGFKCFVKIRSSQDPVPVFVQR- 343 + +Y+ E + D L+ D ++ GF C K R Q VFVQR Sbjct: 228 DNVLYV-EQGFHHDALYSDYLIASDVSFVNEQDVDLEKGFYCTAKFRYRQKDTKVFVQRE 286 Query: 344 NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 N++ + V F++ + GQA VFY N+ LGG I Sbjct: 287 NNEAIRVTFDEPVRAITPGQAVVFY----NDEVCLGGATI 322 >gi|73542506|ref|YP_297026.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia eutropha JMP134] gi|123624143|sp|Q46XF1|MNMA_RALEJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|72119919|gb|AAZ62182.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia eutropha JMP134] Length = 362 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 126/375 (33%), Positives = 185/375 (49%), Gaps = 26/375 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ + S+ C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSEY---CSTRQDWLDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I V ++ +++ V F Y+AG TP P V CN +KF L LGA+ + Sbjct: 62 LIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R + R + + +D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVR----QNAAGRFELLKALDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKTRVR 177 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A E+GL A K DS ICF+ + + D + R G + +G+++G H G+ Sbjct: 178 EIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVVGEHIGLAF 235 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGD 313 YT+GQR+G+G+ G+ +V D S+ + V L + +++W+ Sbjct: 236 YTLGQRKGIGLGGSREGSGDAWYVARKDMASNTLYVVQGHDHPWLLTPTLVAADLSWVAG 295 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDS 372 + + G K R Q P V D D + + F +++ V GQ+ V Y D Sbjct: 296 ----EPPLAGASMAAKTRYRQSDAPCVVDAADGDMLKLAFAEAQWAVTPGQSAVLYDGDV 351 Query: 373 NEARVLGGGIISGSK 387 LGGGII ++ Sbjct: 352 ----CLGGGIIQSAQ 362 >gi|319759218|gb|ADV71160.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis JS14] Length = 419 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 136/370 (36%), Positives = 198/370 (53%), Gaps = 25/370 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 54 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDYKDVAAVAD 110 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 111 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMNLGADYV 170 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +++ +DG M R D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 171 ATGHY--AQVTRDEDGTVH--MLRGADNGKDQTYFLSQLSQEQLQKTMFPLGHLQKPQVR 226 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A GL A K DS ICF+ + + + + + A G ++ ++G+ +G H G++ Sbjct: 227 EIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLP--AQPGRMMTVDGRDMGEHTGLMY 284 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ EP FVV D + + + VG ESL + ++++ D Sbjct: 285 YTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVGQGFYHESLMSTSLQASQVHFTRD 344 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ C K R Q V V+ D V F + + + GQA VFY D Sbjct: 345 -MPEEFTLE---CTAKFRYRQPDSQVTVKVKGDKAEVIFAEPQRAITPGQAVVFY--DGQ 398 Query: 374 EARVLGGGII 383 E LGGG+I Sbjct: 399 EC--LGGGMI 406 >gi|319760524|ref|YP_004124462.1| tRNA-specific 2-thiouridylase mnmA [Candidatus Blochmannia vafer str. BVAF] gi|318039238|gb|ADV33788.1| tRNA-specific 2-thiouridylase mnmA [Candidatus Blochmannia vafer str. BVAF] Length = 366 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 123/374 (32%), Positives = 201/374 (53%), Gaps = 30/374 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V +SGGVDSSV A LLK+ GY V G+ ++ + + + C + D+ DA VC+ Sbjct: 3 KVIVGISGGVDSSVSAWLLKKRGYKVEGLFMKNWENDDTQE---FCASKSDLIDACSVCN 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 T+ + + ++ + N V F Y G TP P + CN+ +KF L + LGAD Sbjct: 60 TLKIPLHTVNFSREYWNNVFKVFLKLYNIGLTPNPDILCNKEIKFKYFLEFAIEDLGADF 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + + K I R +DL +DQSYFL+ QQQL FP+G+ K V Sbjct: 120 IATGHYVRR---INFNNKISLI--RGIDLNKDQSYFLYTLNQQQLKHCLFPIGNFTKLKV 174 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGI 259 R +A+++ L A+K DS ICF+ + + K ++ I ++ G IV+++G +G H G+ Sbjct: 175 RSIAKKLNLITANKKDSMGICFIGKRNF---KKFLSNYIPIQPGPIVNVHGYKIGTHQGV 231 Query: 260 INYTIGQRRGLGV-----AMGEPLFVV--YLDKNSSRVIVGPRES-LEVHRIYLREINWL 311 YTIGQR+GL + + G+P +VV ++ NS V G L ++ +++I W+ Sbjct: 232 PFYTIGQRKGLNIGGIKNSNGKPWYVVDKKIENNSLIVAQGINHPCLMSNQFVVQQIFWI 291 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTS 370 + + + +C VK R Q ++ + + + + + + GQ+ VFY + Sbjct: 292 EECILTSPL----QCSVKTRYRQPDSKCYIFPISKNNLRIILKYPITAITPGQSAVFYLN 347 Query: 371 DSNEARVLGGGIIS 384 + R LGGGII+ Sbjct: 348 E----RCLGGGIIT 357 >gi|259503048|ref|ZP_05745950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus antri DSM 16041] gi|259168914|gb|EEW53409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus antri DSM 16041] Length = 377 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 135/372 (36%), Positives = 194/372 (52%), Gaps = 25/372 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLKR GYDVIGV ++ ++ + G C A +D D +V Sbjct: 8 RVVVGMSGGVDSSVTALLLKRQGYDVIGVFMKNWDD---TDENGVCTATEDYKDVAKVAA 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y G TP P V CN+ +KF + QLGAD + Sbjct: 65 KIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + D R + R D +DQ+YFL QL + FPL K +R Sbjct: 125 ATGHYADLKR----DADGRMHLMRAADQHKDQTYFLSQLDYHQLDKVLFPLARYTKPQIR 180 Query: 202 DLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 ++A+E GL A+K DS ICF+ + G + + + + A G++ ++G+++G+H G++ Sbjct: 181 EIAKEAGLATAEKKDSVGICFIGEDGHFREFLSQYLP--AQPGNMETVDGKVVGQHMGLM 238 Query: 261 NYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQRRGLG+ EP FV+ D + + VG E L + +I+W+ D Sbjct: 239 YYTIGQRRGLGLGGNKESNEPWFVIGKDIKKNVLYVGQGYHNEHLYATHLEASDIHWVDD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + F C K R Q V V V+ +D V V+F+ + GQA FY D Sbjct: 299 VV--SRFGREFHCTAKFRYRQKDVGVTVKIAADDQMVTVNFDDPARAITPGQAVAFY--D 354 Query: 372 SNEARVLGGGII 383 E LG II Sbjct: 355 GQEC--LGSAII 364 >gi|223933686|ref|ZP_03625662.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus suis 89/1591] gi|223897639|gb|EEF64024.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus suis 89/1591] Length = 419 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 137/372 (36%), Positives = 197/372 (52%), Gaps = 29/372 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 54 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDYKDVAAVAD 110 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 111 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMNLGADYV 170 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +++ +DG M R D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 171 ATGHY--AQVSRDEDGTVH--MLRGADNGKDQTYFLSQLSQEQLQKTMFPLGHLQKPQVR 226 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A GL A K DS ICF+ + + + + + A G ++ ++G+ +G H G++ Sbjct: 227 EIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLP--AQPGRMMTVDGRDMGEHTGLMY 284 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ EP FVV D + + + VG ESL + ++++ D Sbjct: 285 YTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVGQGFYHESLMSTSLQASQVHFTRD 344 Query: 314 GLFEDAVVDGFK--CFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + + FK C K R Q V V+ D V F + + + GQA VFY D Sbjct: 345 ------MPEEFKLECTAKFRYRQPDSQVTVKVKGDKAEVIFAEPQQAITPGQAVVFY--D 396 Query: 372 SNEARVLGGGII 383 E LGGG+I Sbjct: 397 GQEC--LGGGMI 406 >gi|189460624|ref|ZP_03009409.1| hypothetical protein BACCOP_01265 [Bacteroides coprocola DSM 17136] gi|189432583|gb|EDV01568.1| hypothetical protein BACCOP_01265 [Bacteroides coprocola DSM 17136] Length = 374 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 122/374 (32%), Positives = 194/374 (51%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76 K+ R++V MSGG+DSS +L+ GY+V+GVT++ ++ S ++ + ++ +A Sbjct: 3 KEKRILVGMSGGIDSSATCIMLQEQGYEVVGVTMRTWDIPSHFSTPEQEQ---PDEILEA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + + + + + H+V D E FRN ++ F Y G TP PCV CN K L + Sbjct: 60 KALAERLGIEHHVADVREEFRNVIVQYFIDEYMKGRTPNPCVMCNPLFKERILCEWADRT 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 G +ATGHY R +D K R + D +DQSYFL+ Q+ L + FPLG M Sbjct: 120 GCAQIATGHYCRL-----EDRKEHRYIVTGDDPTKDQSYFLWKLPQEILKRMVFPLGGMT 174 Query: 197 KESVRDLAREMGLDIADK-SDSQDICFVQQGKYFDVVKR----INAGIALEGDIVHLNGQ 251 K VR E G + K +S ++CF+ + Y D ++ I+ I G V G Sbjct: 175 KTEVRAYLAEKGFEAKAKGGESMEVCFIDK-DYRDFLREHCPDIDERIGT-GWFVDSKGL 232 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 LG+H G YTIGQR+GL +A+G P +V+ ++ + V++G E L+ + + +IN + Sbjct: 233 KLGQHKGFAYYTIGQRKGLEIALGRPAYVLKINPAKNTVMLGDAEQLKAEYMLVEDINVI 292 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 +++ V+IR P+P V D+G + V F+ + GQ+ VFY Sbjct: 293 D----LQELLECPDLSVRIRYRSRPIPCQVILLDEGHLLVKFKAEASAITPGQSAVFY-- 346 Query: 371 DSNEARVLGGGIIS 384 ++ RVLGGG I+ Sbjct: 347 --DKGRVLGGGFIA 358 >gi|283784944|ref|YP_003364809.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Citrobacter rodentium ICC168] gi|282948398|emb|CBG87986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Citrobacter rodentium ICC168] Length = 368 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 132/383 (34%), Positives = 207/383 (54%), Gaps = 34/383 (8%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + ++PK +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ Sbjct: 1 MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 56 ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + LGAD +ATGHY+R R V DGK R + R +D +DQSYFL+ +Q+ FP+ Sbjct: 116 AEDLGADYIATGHYVR-RADV--DGKSR--LLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G++ K VR +A ++ L A K DS ICF+ + K+ + + R A G IV ++G Sbjct: 171 GELSKPQVRKIAEDLELVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIVTVDGDE 228 Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHR 302 +G+H G++ +T+GQR+GLG+ +P +VV D ++ +IV PR L Sbjct: 229 IGQHQGLMYHTLGQRKGLGIGGTKEGTEDPWYVVDKDVENNILIVAQGHDHPR--LMSVG 286 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361 + ++++W+ F + +C VK R Q +P V+ ++D + V F++ V Sbjct: 287 LIAQQLHWVDRLPFTGTM----RCTVKTRYRQTDIPCTVKALDNDRIEVIFDEPVAAVTP 342 Query: 362 GQACVFYTSDSNEARVLGGGIIS 384 GQ+ VFY N LGGGII Sbjct: 343 GQSAVFY----NGEVCLGGGIIE 361 >gi|299531933|ref|ZP_07045333.1| tRNA-specific 2-thiouridylase MnmA [Comamonas testosteroni S44] gi|298720108|gb|EFI61065.1| tRNA-specific 2-thiouridylase MnmA [Comamonas testosteroni S44] Length = 376 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 131/380 (34%), Positives = 192/380 (50%), Gaps = 34/380 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDS+V A LLK+ G++V+G+ ++ + S+ C + D DA V D Sbjct: 6 RVVVGLSGGVDSAVTAYLLKKQGHEVVGIFMKNWEDDDDSE---YCSSNIDFVDAAAVAD 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y AG TP P V CN +KF L +LGA+ + Sbjct: 63 VIGIEIEHVNFAADYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAEKI 122 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R + + + + +D +DQSYFL Q QL FP+G++ K VR Sbjct: 123 ATGHYARVRQ---NPSTQLFELLKGLDNSKDQSYFLHRLNQAQLSKAMFPVGELHKTEVR 179 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGII 260 +A E+GL A K DS ICF+ + + D + R I+ E G I+ + LG+H G+ Sbjct: 180 RIAEEIGLPNARKKDSTGICFIGERPFRDFLNRY---ISKEPGLILDDRNRKLGKHVGLS 236 Query: 261 NYTIGQRRGLGV--------AMG----EPLFVV--YLDKNSSRVIVGPRES-LEVHRIYL 305 YT+GQR GLG+ A G P FV +DKN RV+ G L+ H + Sbjct: 237 FYTLGQRSGLGIGGVKEKGAARGAGDHAPWFVARKEMDKNILRVVQGHDHPLLQSHALLA 296 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQA 364 +++W+ A +G K R Q P + Q + G +DF +++ V GQ+ Sbjct: 297 DQVSWVAG----QAPAEGKAYGSKTRYRQPDSPALISQATEAGFRLDFPEAQWAVTPGQS 352 Query: 365 CVFYTSDSNEARVLGGGIIS 384 V Y D LGGGII+ Sbjct: 353 AVLYDGDV----CLGGGIIA 368 >gi|307711099|ref|ZP_07647521.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus mitis SK321] gi|307617061|gb|EFN96239.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus mitis SK321] Length = 373 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 194/379 (51%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y G TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYREGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS ICF+ + + + N A G ++ ++G+ +G H G++ Sbjct: 181 KLAEEAGLATAKKKDSTGICFIGEKNFKTFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ P FVV D + + + VG +SL + ++++ D Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ C K R Q V V D V F + + + GQA VFY + Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE-- 352 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I + R V Sbjct: 353 --ECLGGGLIDNAYRDGQV 369 >gi|298480213|ref|ZP_06998411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. D22] gi|298273494|gb|EFI15057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. D22] Length = 361 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 125/387 (32%), Positives = 192/387 (49%), Gaps = 59/387 (15%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV+V MSGG+DS+ +L+ GY+++GVT++++ G + DAR Sbjct: 4 RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + HYV D F+ ++ F Y G TP PCV CN KF L +L Sbjct: 50 LAERMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109 Query: 139 DVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 +ATGHY R +Y+ GDD K +DQSYFL+ Q L FP Sbjct: 110 AWVATGHYSRLEEKNGNIYIVAGDDDK------------KDQSYFLWRLGQDVLKRCIFP 157 Query: 192 LGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVH 247 LGD K VR+ E G + K +S ++CF+ +G Y D ++ + E G V+ Sbjct: 158 LGDYTKVKVREYLAEKGYETKSKEGESMEVCFI-KGDYRDFLREQCPELDSEIGSGWFVN 216 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 G LG+H G YTIGQR+GL +A+G+P +V+ ++ + V++G + LE + Sbjct: 217 SEGVKLGKHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLETEYMLAE- 275 Query: 308 INWLGDGLFEDAVVDGFKCF------VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360 +D +VD + F V+IR P+P V+R +DG + V F ++ +A Sbjct: 276 ---------QDKIVDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAIA 326 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSK 387 GQ+ VFY RVLGG I+ + Sbjct: 327 PGQSAVFYDG----RRVLGGAFIASQR 349 >gi|146322015|ref|YP_001201726.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis 98HAH33] gi|145692821|gb|ABP93326.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Streptococcus suis 98HAH33] gi|292559420|gb|ADE32421.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus suis GZ1] Length = 423 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 136/370 (36%), Positives = 198/370 (53%), Gaps = 25/370 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 58 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDYKDVAAVAD 114 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 115 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMNLGADYV 174 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +++ +DG M R D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 175 ATGHY--AQVTRDEDGTVH--MLRGADNGKDQTYFLSQLSQEQLQKTMFPLGHLQKPQVR 230 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A GL A K DS ICF+ + + + + + A G ++ ++G+ +G H G++ Sbjct: 231 EIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLP--AQPGRMMTVDGRDMGEHTGLMY 288 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ EP FVV D + + + VG ESL + ++++ D Sbjct: 289 YTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVGQGFYHESLMSTSLQASQVHFTRD 348 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ C K R Q V V+ D V F + + + GQA VFY D Sbjct: 349 -MPEEFTLE---CTAKFRYRQPDSQVTVKVKGDKAEVIFAEPQRAITPGQAVVFY--DGQ 402 Query: 374 EARVLGGGII 383 E LGGG+I Sbjct: 403 EC--LGGGMI 410 >gi|116628661|ref|YP_821280.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus thermophilus LMD-9] gi|122266745|sp|Q03I88|MNMA_STRTD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|116101938|gb|ABJ67084.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus thermophilus LMD-9] Length = 373 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 138/370 (37%), Positives = 197/370 (53%), Gaps = 25/370 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I++ +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIDIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +++ +DG M R D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHY--AQVVRDEDGIVH--MLRGADNNKDQTYFLSQLSQEQLQKAMFPLGHLQKSEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A GL A K DS ICF+ + + + + + A +G ++ ++G+ +G HNG++ Sbjct: 181 EIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEHNGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR G+G+ P FVV D + + + VG ESL + I++ D Sbjct: 239 YTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDASTIHFTRD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 E + +C K R Q V V+ D V F + + + GQA VFY D Sbjct: 299 MPEEFEM----ECTAKFRYRQPDSKVTVKVKGDKSEVIFAEPQRAITPGQAVVFY--DGQ 352 Query: 374 EARVLGGGII 383 E LGGGII Sbjct: 353 EC--LGGGII 360 >gi|94986647|ref|YP_594580.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Lawsonia intracellularis PHE/MN1-00] gi|205816877|sp|Q1MRW7|MNMA_LAWIP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|94730896|emb|CAJ54259.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Lawsonia intracellularis PHE/MN1-00] Length = 352 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 118/371 (31%), Positives = 186/371 (50%), Gaps = 29/371 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 M V VA+SGG DS A L+ + V + R V + Sbjct: 1 MNVAVAVSGGTDSLYTLATLREAFGNHHVFAL----------HARFKEQITNDPVPALKE 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C +NV +V D + F +I PF +YA G+TP PCV CN VKF L ++LGA Sbjct: 51 QCHNLNVPLHVVDLHKEFNELIIRPFIKAYADGKTPNPCVHCNAKVKFGLLQKKAQELGA 110 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY+ + D + + C D +DQSYFL T ++QL FPLG ++K Sbjct: 111 NQIATGHYVS---LIDHDLYGKALKCG-ADSTKDQSYFLALTPREQLQTAIFPLGTLRKT 166 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR+ ++MGL++ +SQ+ICFV Y ++ + + EG +V L+G ++G+H G Sbjct: 167 EVRERLQKMGLEVPLPKESQEICFVPNDDYRKFLQSSDVDLLSEGRMVMLDGTLVGKHKG 226 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 + YT GQRRGLGV+ EPL+V + + + + +++G + + V ++IN+L + +D Sbjct: 227 LWKYTEGQRRGLGVSWSEPLYVAHKNHSCNELVLGTAKDILVDTCTAQDINFL---VPQD 283 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQ-----RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + FV+ R Q VP +Q + + + F ++ A GQ + Sbjct: 284 NWPK--ELFVRTRYRQQAVPADIQFVTNTSSSKKITIHFHSPQLPAAPGQLAAIF---DK 338 Query: 374 EARVLGGGIIS 384 VL GG+I+ Sbjct: 339 SGYVLAGGLIT 349 >gi|168492409|ref|ZP_02716552.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae CDC0288-04] gi|183573402|gb|EDT93930.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae CDC0288-04] Length = 373 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 139/385 (36%), Positives = 198/385 (51%), Gaps = 37/385 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +R+ +DG M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHY--ARVVRDEDGTVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G++ Sbjct: 181 KLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYL-RE 307 YTIGQR GLG+ P FVV D + + + VG SLE +++ RE Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRE 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 + E+ ++ C K R Q V V + V F + + + GQA VF Sbjct: 299 MP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGEKAEVIFAEPQRAITPGQAVVF 348 Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392 Y + LGGG+I + R V Sbjct: 349 YDGE----ECLGGGLIDNAYRDGQV 369 >gi|261377622|ref|ZP_05982195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria cinerea ATCC 14685] gi|269146376|gb|EEZ72794.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria cinerea ATCC 14685] Length = 367 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 128/380 (33%), Positives = 190/380 (50%), Gaps = 24/380 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + C QD Sbjct: 1 MNTTANTTNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDEY---CSIKQDS 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 58 FDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 GAD++ATGHY R + G + + +D +DQSYFL+ QL FPLG Sbjct: 118 IDQGADIIATGHYARKEVRNG-----THYLLKGLDQNKDQSYFLYRLKPFQLERAIFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ + Sbjct: 173 GLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGKTV 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI-- 308 G+H G++ YT+GQR+GLG+ GEP FV L KN V+ G L +Y R + Sbjct: 231 GKHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSLVM 286 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 N L L E + C + R P + +D+ V + F++S+ V GQ+ V Y Sbjct: 287 NDLSFTLPERPKEGRYTCKTRYRMVDAPCEL-RYLDDETVELVFDESQWAVTPGQSAVLY 345 Query: 369 TSDSNEARVLGGGIISGSKR 388 D LGGGII + + Sbjct: 346 EGDV----CLGGGIIQSTDK 361 >gi|55821970|ref|YP_140412.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus thermophilus LMG 18311] gi|55823887|ref|YP_142328.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus thermophilus CNRZ1066] gi|81558821|sp|Q5LXJ9|MNMA_STRT1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|81560008|sp|Q5M249|MNMA_STRT2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|55737955|gb|AAV61597.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase [Streptococcus thermophilus LMG 18311] gi|55739872|gb|AAV63513.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase [Streptococcus thermophilus CNRZ1066] gi|312279316|gb|ADQ63973.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Streptococcus thermophilus ND03] Length = 373 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 139/379 (36%), Positives = 200/379 (52%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I++ +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIDIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +++ +DG M R D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHY--AQVVRDEDGIVH--MLRGADNNKDQTYFLSQLSQEQLQKTMFPLGHLQKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A GL A K DS ICF+ + + + + + A +G ++ ++G+ +G HNG++ Sbjct: 181 EIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTIDGRDMGEHNGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR G+G+ P FVV D + + + VG ESL + I++ D Sbjct: 239 YTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDASMIHFTRD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 E + +C K R Q V V+ D V F + + + GQA VFY D Sbjct: 299 MPEEFEM----ECTAKFRYRQPDSKVTVKVKGDKSEVIFAEPQRAITPGQAVVFY--DGQ 352 Query: 374 EARVLGGGIISGSKRSDAV 392 E LGGGII + + V Sbjct: 353 EC--LGGGIIDQAYKDGKV 369 >gi|325919552|ref|ZP_08181566.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xanthomonas gardneri ATCC 19865] gi|325549961|gb|EGD20801.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xanthomonas gardneri ATCC 19865] Length = 378 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 129/374 (34%), Positives = 186/374 (49%), Gaps = 28/374 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R++V +SGGVDSSV A L + G + G+ +Q + A G C A D DA VC Sbjct: 5 RIIVGVSGGVDSSVAAWRLAQQGESIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + + V F + YAAG TP P V CNR VKF L + LGA+ + Sbjct: 61 VLGIPFHFRDFSNEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R V G R R++ R D +DQSYFL Q QL FP+GD++K ++R Sbjct: 121 ATGHYAR----VAHSGGRWRLL-RGADRGKDQSYFLHQLGQTQLAATLFPIGDLEKSTLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A++ L K DS ICF+ + + + + R A G+I GQ + H G+ Sbjct: 176 RIAQDANLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RES--LEVHRIYLREINWLGD 313 +T+GQR GL + P +VV D S+ + V R+S L+ H + + +W+ Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSHWLQSEQPHWVTG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 F C + R Q P V+ DDG V V FE+ + V GQ+ V Y D Sbjct: 294 A----PPARSFSCTAQTRYRQPDEPCTVEVRDDGSVQVRFERPQRAVTPGQSLVLY--DG 347 Query: 373 NEARVLGGGIISGS 386 E LGG +I+ + Sbjct: 348 EE--CLGGAVIAAT 359 >gi|222153939|ref|YP_002563116.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus uberis 0140J] gi|254811465|sp|B9DWD3|MNMA_STRU0 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|222114752|emb|CAR43910.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus uberis 0140J] Length = 373 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 137/371 (36%), Positives = 196/371 (52%), Gaps = 25/371 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V Sbjct: 7 IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + + V F S Y AG TP P V CN+ +KF L LGAD Sbjct: 64 DQIGIPYYSVNFEKEYWDRVFEYFLSEYKAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + R +DG M R +D +DQ+YFL +Q+QL FPLG ++K V Sbjct: 124 VATGHYAQVRR--DEDGIVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLQKSEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H G++ Sbjct: 180 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTVDGRDMGEHAGLM 237 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YTIGQR GLG+ +P FVV D + + + VG ESL + I++ Sbjct: 238 YYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSKNILYVGQGFYHESLMSTSLQASVIHFTR 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 D E + +C K R Q V V + V F++ + + GQA VFY ++ Sbjct: 298 DMPSEFTL----ECTAKFRYRQPDSKVTVYVKGEHAEVVFDEPQRAITPGQAVVFYDAE- 352 Query: 373 NEARVLGGGII 383 LGGGII Sbjct: 353 ---ECLGGGII 360 >gi|190149429|ref|YP_001967954.1| tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249862|ref|ZP_07336066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307249368|ref|ZP_07531361.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251687|ref|ZP_07533592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307260616|ref|ZP_07542308.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262747|ref|ZP_07544374.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914560|gb|ACE60812.1| putative tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302651429|gb|EFL81581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306858590|gb|EFM90653.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860884|gb|EFM92892.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306869693|gb|EFN01478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871892|gb|EFN03609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 389 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 125/387 (32%), Positives = 212/387 (54%), Gaps = 29/387 (7%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +L + L +N K +V++ MSGGVDSSV A +L++ GY V G+ ++ + + C Sbjct: 18 KLTAEQLAENAKK-KVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 73 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 A D+ DA+ V D + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 74 TAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKEIKFK 133 Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L + LGAD +ATGHY+R GDD + + R +D +DQSYFL+ + +Q+ Sbjct: 134 AFLEYAAEDLGADYIATGHYVRRS---GDDNNAQ--LLRGLDANKDQSYFLYTLSHKQVG 188 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 FP+GD++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 189 QSLFPVGDIEKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQPGEIR 246 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298 ++G+++GRH+G++ +T+GQR+GLG+ +P +VV D ++ ++V +L Sbjct: 247 TVDGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHDNSAL 306 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + +++W+ + + +C VK R Q + +Q +DD + V F++ ++ Sbjct: 307 LSSGLIATQLHWVD----RQPIRENLRCTVKTRYRQTDIACEIQPIDDDTIRVIFDEPQI 362 Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGG+I Sbjct: 363 AVTPGQSAVFYQGEV----CLGGGVIE 385 >gi|217969633|ref|YP_002354867.1| tRNA-specific 2-thiouridylase MnmA [Thauera sp. MZ1T] gi|217506960|gb|ACK53971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thauera sp. MZ1T] Length = 365 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 131/381 (34%), Positives = 190/381 (49%), Gaps = 35/381 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+VVV MSGGVDS+V A LLKR GY V G+ ++ + S+ C QD+ D VC Sbjct: 1 MKVVVGMSGGVDSAVTALLLKRQGYQVTGLFMKNWEDDDDSE---YCSTRQDLVDVASVC 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + V ++ +++ V F Y AG TP P V CN +KF L QLGA+ Sbjct: 58 DVIGIDLEVVNFSAEYKDRVFADFLHEYEAGRTPNPDVLCNSEIKFRCFLDHAMQLGAER 117 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + R + +DG+ + + D +DQSYFL+ Q+QL FPLG + K V Sbjct: 118 IATGHYAQVREWA-NDGRSEYQLLKAEDGTKDQSYFLYRLNQEQLAKTMFPLGALYKREV 176 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259 R +A E GL +A+K DS ICF+ + + + + R G+I L +G++LG H G+ Sbjct: 177 RRIAAEAGLHVAEKKDSTGICFIGERPFREFLMRYLP--TRPGEIRALDDGRVLGEHQGL 234 Query: 260 INYTIGQRRGLGV----------AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLR 306 + +TIGQR+GL + E +V D ++ + V +L R+ Sbjct: 235 MYHTIGQRKGLHIGGLKGNQDEAGEHEAWYVAGKDVKANVLYVVQGHAHPALLKDRLVAG 294 Query: 307 EINWLGDGLFEDAVVDGFKCFV---KIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASG 362 ++NW+ A D +V K R P + R DG + F + + V G Sbjct: 295 DLNWI-------AGRDPHSHWVYTAKPRYRTPDQPCEIDRIVDGRAEIAFAQPQWAVTPG 347 Query: 363 QACVFYTSDSNEARVLGGGII 383 Q+ V Y S LGGGII Sbjct: 348 QSVVVYESKV----CLGGGII 364 >gi|30248966|ref|NP_841036.1| trmU; tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein [Nitrosomonas europaea ATCC 19718] gi|81584700|sp|Q82VV0|MNMA_NITEU RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|30138583|emb|CAD84874.1| trmU; tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein [Nitrosomonas europaea ATCC 19718] Length = 362 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 135/384 (35%), Positives = 190/384 (49%), Gaps = 45/384 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK+ GYDV G+ ++ + + C + QD DA V D Sbjct: 5 RVVVGMSGGVDSSVAALLLKQQGYDVTGLFMKNWEEDDTDEY---CSSRQDFLDAASVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ V ++ +R V F Y AG TP P V CN +KF L LGAD + Sbjct: 62 ILDIPLEVVNFSTEYRERVFNLFLKEYQAGRTPNPDVLCNSEIKFRAFLDHALNLGADWI 121 Query: 142 ATGHYIRS-------RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 ATGHY + +L G+DG +DQSYFL+ QQQL FP+G Sbjct: 122 ATGHYAQVHETDGLFQLLKGEDGN------------KDQSYFLYRLNQQQLSHTIFPIGH 169 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 + K VR +ARE L + K DS ICF+ + + + + R A G+I L+ Q++G Sbjct: 170 LYKREVRKIAREHRLPNSTKKDSTGICFIGERPFREFLNRYLP--ANPGEIHTLDDQVVG 227 Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLR 306 H G++ YTIGQR+GLG+ +P FV D KN V+ G +L + Sbjct: 228 EHLGVMYYTIGQRQGLGIGGTRQGSEQPWFVSGKDIKKNVLYVVQGHDHPALLRSSLTAA 287 Query: 307 EINWL-GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQA 364 +++W+ G ++ V KIR Q P + D + F + G+ GQ+ Sbjct: 288 DLSWISGTPPHQNWVYA-----AKIRYRQTDAPCAITHFEHDSCQIGFAAPQWGITPGQS 342 Query: 365 CVFYTSDSNEARV-LGGGIISGSK 387 V Y E++V LGGG+I GS Sbjct: 343 VVVY-----ESKVCLGGGVIIGSN 361 >gi|295086500|emb|CBK68023.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides xylanisolvens XB1A] Length = 361 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 125/387 (32%), Positives = 192/387 (49%), Gaps = 59/387 (15%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV+V MSGG+DS+ +L+ GY+++GVT++++ G + DAR Sbjct: 4 RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + HYV D F+ ++ F Y G TP PCV CN KF L +L Sbjct: 50 LAERMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109 Query: 139 DVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 +ATGHY R +Y+ GDD K +DQSYFL+ Q L FP Sbjct: 110 AWVATGHYSRLEEKNGNIYIVAGDDDK------------KDQSYFLWRLGQDVLKRCIFP 157 Query: 192 LGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVH 247 LGD K VR+ E G + K +S ++CF+ +G Y D ++ + E G V+ Sbjct: 158 LGDYTKVKVREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDSEIGPGWFVN 216 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 G LG+H G YTIGQR+GL +A+G+P +V+ ++ + V++G + LE + Sbjct: 217 SEGVKLGKHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLETEYMLAE- 275 Query: 308 INWLGDGLFEDAVVDGFKCF------VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360 +D +VD + F V+IR P+P V+R +DG + V F ++ +A Sbjct: 276 ---------QDKIVDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAIA 326 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSK 387 GQ+ VFY RVLGG I+ + Sbjct: 327 PGQSAVFYDG----RRVLGGAFIASQR 349 >gi|262408193|ref|ZP_06084740.1| tRNA methyl transferase [Bacteroides sp. 2_1_22] gi|294806750|ref|ZP_06765577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides xylanisolvens SD CC 1b] gi|262353745|gb|EEZ02838.1| tRNA methyl transferase [Bacteroides sp. 2_1_22] gi|294446032|gb|EFG14672.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides xylanisolvens SD CC 1b] Length = 361 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 125/387 (32%), Positives = 192/387 (49%), Gaps = 59/387 (15%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV+V MSGG+DS+ +L+ GY+++GVT++++ G + DAR Sbjct: 4 RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + HYV D F+ ++ F Y G TP PCV CN KF L +L Sbjct: 50 LAERMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109 Query: 139 DVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 +ATGHY R +Y+ GDD K +DQSYFL+ Q L FP Sbjct: 110 AWVATGHYSRLEEKNGNIYIVAGDDDK------------KDQSYFLWRLGQDVLKRCIFP 157 Query: 192 LGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVH 247 LGD K VR+ E G + K +S ++CF+ +G Y D ++ + E G V+ Sbjct: 158 LGDYTKVKVREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDSEIGSGWFVN 216 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 G LG+H G YTIGQR+GL +A+G+P +V+ ++ + V++G + LE + Sbjct: 217 SEGVKLGKHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLETEYMLAE- 275 Query: 308 INWLGDGLFEDAVVDGFKCF------VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360 +D +VD + F V+IR P+P V+R +DG + V F ++ +A Sbjct: 276 ---------QDKIVDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAIA 326 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSK 387 GQ+ VFY RVLGG I+ + Sbjct: 327 PGQSAVFYDG----RRVLGGAFIASQR 349 >gi|325983111|ref|YP_004295513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosomonas sp. AL212] gi|325532630|gb|ADZ27351.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosomonas sp. AL212] Length = 359 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 126/377 (33%), Positives = 189/377 (50%), Gaps = 39/377 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV A +LK+ GYDV+G+ ++ + + C + QD DA V D Sbjct: 5 RVIVGMSGGVDSSVAAYVLKQQGYDVVGLFMKNWEDDDTDEY---CSSRQDFIDAVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I++ + ++ ++ V F + Y AG TP P V CN +KF L +LGAD + Sbjct: 62 VIDIPIEIVNFSIEYKERVFSQFLAEYQAGRTPNPDVLCNAEIKFKAFLDHANKLGADYI 121 Query: 142 ATGHYIRSR-------LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 ATGHY R R L G+DG +DQSYFL+ Q QL FP+G Sbjct: 122 ATGHYARVRKAGGVFQLLKGEDGN------------KDQSYFLYRLNQAQLAKSLFPIGH 169 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 + K VR +ARE+ L + K DS ICF+ + + + + R G+I +G+++G Sbjct: 170 LYKREVRKIARELKLPNSSKKDSTGICFIGERPFREFLNRYLP--HEPGEIQTTDGKVIG 227 Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSS-RVIVGPRESLEVHRIYLREI 308 H G++ YTIGQR+GLG+ EP FV D N + ++V ++ R L+ I Sbjct: 228 EHIGLMYYTIGQRQGLGIGGIRNGGDEPWFVAAKDMNRNVLIVVQGHNHPDLFRPSLKAI 287 Query: 309 N--WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 + W+ D V K + R + P + + + V+F +++ + GQ+ V Sbjct: 288 DLSWIDDKQPHCNWVYAAK--TRYRQTDAPCTI-TNLSHESCEVEFAQNQWAITPGQSVV 344 Query: 367 FYTSDSNEARVLGGGII 383 Y S LGGG+I Sbjct: 345 IYESQV----CLGGGVI 357 >gi|255536681|ref|YP_003097052.1| tRNA-specific 2-thiouridylase MnmA [Flavobacteriaceae bacterium 3519-10] gi|255342877|gb|ACU08990.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Flavobacteriaceae bacterium 3519-10] Length = 395 Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 121/403 (30%), Positives = 205/403 (50%), Gaps = 47/403 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++VV +SGGVDSSV A LL++ G++V+ + ++ +N + + C +D DA V Sbjct: 1 MKIVVGLSGGVDSSVAAYLLQKQGHEVVALFMRNWNDASVT-LEDECPWIEDSNDALMVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + V D E ++ ++ + Y G TP P V CNR VKF + LGA+ Sbjct: 60 QKLGIPFQVIDMSELYKEKIVDYMFAEYEKGRTPNPDVLCNREVKFDVFMKTALSLGAEK 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R V ++G + D +DQSYFL +Q QL FP+G++ K V Sbjct: 120 VATGHYARVDSTVDENGNEMFHLLAGKDNNKDQSYFLCQLSQDQLSKSLFPIGELTKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFV---------------QQGKYFDVVK---RINAG---- 238 R++A+E+GL ADK DSQ +CF+ ++GK ++ K + A Sbjct: 180 REIAKEIGLVTADKKDSQGLCFIGKVSLPTFLQQQLKPKEGKIVEIFKDFPELTAEKPQF 239 Query: 239 ---------IALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSS 288 ++ + +G+I+G+H G +TIGQ +GLG+ E F++ D ++ Sbjct: 240 ATKLEELKFLSTKNSYQESDGKIIGKHQGAHYFTIGQSKGLGIGGHKESCFIISRDMPTN 299 Query: 289 RVIVGPRESLE-VHRIYLR----EINWLGDGLFEDAVVDG--FKCFVKIRSSQDPVPVFV 341 + VG ++ +++ L+ EI+W+ + L +++G K +IR Q + Sbjct: 300 TIFVGEGKNFPGLYQTALKIDPSEIHWVREDL---RLLNGETMKVQARIRYRQALEEATL 356 Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + ++G++++FE + VA GQ +Y D +LG G+IS Sbjct: 357 YQFEEGLFIEFENPQSAVAEGQFAAWYMED----ELLGSGVIS 395 >gi|254514300|ref|ZP_05126361.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma proteobacterium NOR5-3] gi|219676543|gb|EED32908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma proteobacterium NOR5-3] Length = 368 Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 121/379 (31%), Positives = 192/379 (50%), Gaps = 26/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A +L GY V G+ ++ ++ ++ C A D DA+ V D Sbjct: 6 KVIVGMSGGVDSSVAALMLLEQGYHVEGLFMKNWDEDDGTEY---CTAKADFADAQAVAD 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + ++ + ++ + + V F + Y +G TP P + CNR +KF L +LGAD + Sbjct: 63 KLQITLHSANFAAEYWDNVFEHFLAEYQSGRTPNPDILCNREIKFRAFLDYALELGADSI 122 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + G R + + +D +DQSYFL A +L FPLG++ K VR Sbjct: 123 ATGHYARRGVMQG-----RPALLKGLDANKDQSYFLHAVGHAELAKTLFPLGEIAKPEVR 177 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 A L DK DS ICF+ + ++ D ++R A G I L G +G H+G++ Sbjct: 178 ARAAAADLTTHDKKDSTGICFIGERRFKDFLQRYLP--AQPGVIKTLEGDTIGEHSGLMY 235 Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313 +TIGQR+GLG+ P +V D N V+ G +L ++ +E+ W+ Sbjct: 236 HTIGQRQGLGIGGLATHNEAPWYVAGKDLGNNVLWVVQGNDHPALFSDELWAQELFWISG 295 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 +A +C K+R Q V ++ D V F++ + + GQ+ VFY ++ Sbjct: 296 ----EAPSLPLRCKAKVRYRQPDQDCTVIQDKDHYRVSFDQPQRAITPGQSVVFYQDNA- 350 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I+ + + A+ Sbjct: 351 ---CLGGGVITDTGAALAI 366 >gi|293370352|ref|ZP_06616907.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides ovatus SD CMC 3f] gi|292634573|gb|EFF53107.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides ovatus SD CMC 3f] Length = 361 Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 125/387 (32%), Positives = 192/387 (49%), Gaps = 59/387 (15%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV+V MSGG+DS+ +L+ GY+++GVT++++ G + DAR Sbjct: 4 RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + HYV D F+ ++ F Y G TP PCV CN KF L +L Sbjct: 50 LAERMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109 Query: 139 DVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 +ATGHY R +Y+ GDD K +DQSYFL+ Q L FP Sbjct: 110 AWVATGHYSRLEEKNGNIYIVAGDDDK------------KDQSYFLWRLGQDVLKRCIFP 157 Query: 192 LGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVH 247 LGD K VR+ E G + K +S ++CF+ +G Y D ++ + E G V+ Sbjct: 158 LGDYTKVKVREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDSEIGPGWFVN 216 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 G LG+H G YTIGQR+GL +A+G+P +V+ ++ + V++G + LE + Sbjct: 217 SEGVKLGKHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLETEYMLAE- 275 Query: 308 INWLGDGLFEDAVVDGFKCF------VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360 +D +VD + F V+IR P+P V+R +DG + V F ++ +A Sbjct: 276 ---------KDKIVDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAIA 326 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSK 387 GQ+ VFY RVLGG I+ + Sbjct: 327 PGQSAVFYDG----RRVLGGAFIASQR 349 >gi|228477995|ref|ZP_04062606.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus salivarius SK126] gi|228250175|gb|EEK09428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus salivarius SK126] Length = 373 Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 139/379 (36%), Positives = 199/379 (52%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +++ +DG M R D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHY--AQVVRDEDGIVH--MLRGADNNKDQTYFLSQLSQEQLQKTMFPLGHLQKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A GL A K DS ICF+ + + + + + A +G ++ ++G+ +G HNG++ Sbjct: 181 EIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEHNGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR G+G+ P FVV D + + + VG ESL + I++ D Sbjct: 239 YTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDASMIHFTRD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 E + +C K R Q V V+ D V F + + + GQA VFY D Sbjct: 299 MPEEFEM----ECTAKFRYRQPDSKVTVKVKGDKAEVIFAEPQRAITPGQAVVFY--DGQ 352 Query: 374 EARVLGGGIISGSKRSDAV 392 E LGGGII + + V Sbjct: 353 EC--LGGGIIDQAYKDGKV 369 >gi|302337414|ref|YP_003802620.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Spirochaeta smaragdinae DSM 11293] gi|301634599|gb|ADK80026.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Spirochaeta smaragdinae DSM 11293] Length = 360 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 131/382 (34%), Positives = 193/382 (50%), Gaps = 41/382 (10%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N + VV+A+SGGVDSSV A +L R + G T + + CC + +Y A Sbjct: 3 NTHNDAVVIALSGGVDSSVAAWMLSRQSGRIFGATHYIQDD-------SPCCNTKTIYRA 55 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R +C + + + + D FR +V+ PF +Y ETP PCV CN ++F D R+L Sbjct: 56 RVICRDLGIPYRLLDMRSSFRQSVVDPFVETYRRAETPNPCVRCNERLRFGDFYHQVRRL 115 Query: 137 ----GA------DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 GA +ATGHY R+ + G R+ + D +DQSY L+ + L Sbjct: 116 LVEEGALRETERPRIATGHYARTAVVDGVSYIRKGV-----DPSKDQSYMLYRIPRDVLP 170 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAG-IALEGD 244 + FPLG+ K+ V ++A L +SQDICF G Y D ++ R+ + GD Sbjct: 171 YVCFPLGEYTKKEVVEIALRENLPTKSIKESQDICFA-DGGYIDFLRHRLGTEFVDRPGD 229 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 +V +G+ LG+H G ++YTIGQR+GLG+ G P +V +D +++RV+V + R Sbjct: 230 LVDNSGKRLGQHRGYLHYTIGQRQGLGLGDG-PWYVSQIDGDANRVVVARKGEFGTQRFS 288 Query: 305 LREINW-LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVAS 361 L E+ W L D F+C VKIR + VP V+ + V+ E+ V Sbjct: 289 LSEVIWDLPDA-------PPFECMVKIRYNSGEVPCRVEGLPESGSLLVELEEP-ASVTP 340 Query: 362 GQACVFYTSDSNEARVLGGGII 383 GQ+ VFY D V+GGGII Sbjct: 341 GQSAVFYRDDL----VIGGGII 358 >gi|294636777|ref|ZP_06715115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Edwardsiella tarda ATCC 23685] gi|291089992|gb|EFE22553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Edwardsiella tarda ATCC 23685] Length = 376 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 128/376 (34%), Positives = 200/376 (53%), Gaps = 32/376 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 17 KVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDNDE---YCSAAADLADAQAVCD 73 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 74 KLGIELHTVNFAAEYWDNVFELFLQEYRAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 133 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R DG + + R +D +DQSYFL+ + QQ+ FP+G+++K V Sbjct: 134 IATGHYVRRR---DIDGTTQ--LLRGVDANKDQSYFLYTLSHQQVAQSLFPVGELEKPEV 188 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ D + R A G I+ ++GQ +G H G++ Sbjct: 189 RRIATQLDLATAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGQEIGEHQGLM 246 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ EP +VV D ++ ++V PR L + + ++++W Sbjct: 247 YHTLGQRKGLGIGGTKEGNEEPWYVVDKDVANNVLLVAQGHDHPR--LFSNGLIAQQLHW 304 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + + +C VK R Q +P V DD + V F++ V GQ+ VFY Sbjct: 305 VD----RRPLTAELRCTVKTRYRQADIPCRVIPIDDTRIEVRFDQPVAAVTPGQSAVFYQ 360 Query: 370 SDSNEARVLGGGIISG 385 + LGGGII Sbjct: 361 DEV----CLGGGIIEA 372 >gi|53728867|ref|ZP_00134691.2| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 389 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 125/387 (32%), Positives = 211/387 (54%), Gaps = 29/387 (7%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +L + L +N K +V++ MSGGVDSSV A +L++ GY V G+ ++ + + C Sbjct: 18 KLTAEQLAENAKK-KVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 73 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 A D+ DA+ V D + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 74 TAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKEIKFK 133 Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L + LGAD +ATGHY+R GDD + + R +D +DQSYFL+ + +Q+ Sbjct: 134 AFLEYAAEDLGADYIATGHYVRRS---GDDNNAQ--LLRGLDANKDQSYFLYTLSHKQVG 188 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 FP+GD++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 189 QSLFPVGDIEKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQPGEIR 246 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298 + G+++GRH+G++ +T+GQR+GLG+ +P +VV D ++ ++V +L Sbjct: 247 TVGGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHDNSAL 306 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + +++W+ + + +C VK R Q + +Q +DD + V F++ ++ Sbjct: 307 LSSGLIATQLHWVD----RQPIRENLRCTVKTRYRQTDIACEIQPIDDDTIRVIFDEPQI 362 Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGG+I Sbjct: 363 AVTPGQSAVFYQGEV----CLGGGVIE 385 >gi|324989555|gb|EGC21501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis SK353] Length = 373 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 135/379 (35%), Positives = 198/379 (52%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYAQ----VKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS ICF+ + + + + + A G ++ L G+ +G+H G++ Sbjct: 181 AIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ EP FVV D + + + VG ++L + ++++ + Sbjct: 239 YTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHFTKE 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ C K R Q V V D V+F+K + + GQA VFY D Sbjct: 299 -MPEEFTME---CTAKFRYRQPDSKVTVTVKGDKAVVNFDKPQRAITPGQAVVFYDGD-- 352 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I + ++ V Sbjct: 353 --ECLGGGLIDRAYKNGQV 369 >gi|307256183|ref|ZP_07537970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865364|gb|EFM97260.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 389 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 125/387 (32%), Positives = 212/387 (54%), Gaps = 29/387 (7%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +L + L +N K +V++ MSGGVDSSV A +L++ GY V G+ ++ + + C Sbjct: 18 KLTAEQLAENAKK-KVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 73 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 A D+ DA+ V D + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 74 TAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKEIKFK 133 Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L + LGAD +ATGHY+R GDD + + R +D +DQSYFL+ + +Q+ Sbjct: 134 AFLEYAAEDLGADYIATGHYVRRS---GDDNNVQ--LLRGLDANKDQSYFLYTLSHKQVG 188 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 FP+GD++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 189 QSLFPVGDIEKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQPGEIR 246 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298 ++G+++GRH+G++ +T+GQR+GLG+ +P +VV D ++ ++V +L Sbjct: 247 TVDGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHDNSAL 306 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + +++W+ + + +C VK R Q + +Q +DD + V F++ ++ Sbjct: 307 LSSGLIATQLHWVD----RQPIRENLRCTVKTRYRQTDIACEIQPIDDDTIRVIFDEPQI 362 Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGG+I Sbjct: 363 AVTPGQSAVFYQGEV----CLGGGVIE 385 >gi|83319617|ref|YP_424495.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123535669|sp|Q2SRW8|MNMA_MYCCT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|83283503|gb|ABC01435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 375 Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 126/378 (33%), Positives = 195/378 (51%), Gaps = 27/378 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 +VVV +SGGVDSSV LL + GY+V G+ ++ ++S + G+ C QD Sbjct: 4 KVVVGLSGGVDSSVACYLLLQQGYEVEGLFMRNWDSATNNDILGNTNINDDICPQEQDYL 63 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VT 133 DA+ V D +N+ + D+ + + + V F Y TP P + CN+ +KF L+ Sbjct: 64 DAKAVADKLNIKLHRVDFIKEYWDYVFSYFIEEYKKARTPNPDILCNKYIKFDKFLNYAI 123 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 QL AD +A GHY + + ++ + + D+ +DQ+YFL Q QL FPL Sbjct: 124 NQLNADYIAMGHYAKVEF---NKTTKQYELIKASDINKDQTYFLSQLNQNQLSKTLFPLA 180 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252 ++ KE VR +A E L A+K DS ICF+ + + ++ N + GDIV + ++ Sbjct: 181 NLTKEQVRKIALEQNLITANKKDSTGICFIGERNFTSFLQ--NYIPSQTGDIVDIKTNKV 238 Query: 253 LGRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LR 306 LG+H GI+ YTIGQR+G+ ++ M EP +V DK+ + I+ + + +Y + Sbjct: 239 LGKHIGIMYYTIGQRKGINLSGMSEPYYVA--DKDVKKNILYVCSTSDQSYLYSTSCLVN 296 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQAC 365 +INW+ D V+ F+C K R Q V V++ DD Y V F+K + GQ Sbjct: 297 DINWILDISKYVDDVNQFECQAKFRYRQLDNKVVVKKIDDNNYKVMFKKPLKAITIGQQA 356 Query: 366 VFYTSDSNEARVLGGGII 383 VFY D LGG +I Sbjct: 357 VFYLDDI----CLGGAVI 370 >gi|221069865|ref|ZP_03545970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Comamonas testosteroni KF-1] gi|220714888|gb|EED70256.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Comamonas testosteroni KF-1] Length = 376 Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 131/380 (34%), Positives = 192/380 (50%), Gaps = 34/380 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDS+V A LLK+ G++V+G+ ++ + S+ C + D DA V D Sbjct: 6 RVVVGLSGGVDSAVTAYLLKQQGHEVVGIFMKNWEDDDDSE---YCSSNIDFVDAAAVAD 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y AG TP P V CN +KF L +LGA+ + Sbjct: 63 VIGIEIEHVNFAADYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAEKI 122 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R + + + + +D +DQSYFL Q QL FP+G++ K VR Sbjct: 123 ATGHYARVRQ---NPSTQLFELLKGLDNSKDQSYFLHRLNQAQLSKAMFPVGELHKTEVR 179 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGII 260 +A E+GL A K DS ICF+ + + D + R I+ E G I+ + LG+H G+ Sbjct: 180 RIAEEIGLPNARKKDSTGICFIGERPFRDFLNRY---ISKEPGPILDDRNRKLGKHVGLS 236 Query: 261 NYTIGQRRGLGV--------AMG----EPLFVV--YLDKNSSRVIVGPRESLEV-HRIYL 305 YT+GQR GLG+ A G P FV +DKN RV+ G L + H + Sbjct: 237 FYTLGQRSGLGIGGVKEKGAARGAGDHAPWFVARKEMDKNILRVVQGHDHPLLLSHALLA 296 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQA 364 +++W+ A G K R Q P + Q ++ G +DF +++ V GQ+ Sbjct: 297 DQVSWVAG----HAPAQGKAYGSKTRYRQPDSPALISQASEAGFRLDFPEAQWAVTPGQS 352 Query: 365 CVFYTSDSNEARVLGGGIIS 384 V Y D LGGGII+ Sbjct: 353 AVLYDGDV----CLGGGIIA 368 >gi|254429373|ref|ZP_05043080.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alcanivorax sp. DG881] gi|196195542|gb|EDX90501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alcanivorax sp. DG881] Length = 364 Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 129/382 (33%), Positives = 195/382 (51%), Gaps = 36/382 (9%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K PKD RV+V MSGGVDSSV AA L GY V G+ ++ +N + C A +D+ D Sbjct: 3 KAPKDTRVIVGMSGGVDSSVAAARLIDAGYQVEGLFMKNWNEDDGTD---YCTAREDLLD 59 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A +V + + + ++ E++ + V F + Y AG TP P + CN+ +KF L Sbjct: 60 AMQVAGVLGIELHTANFAEQYWDRVFAHFLAEYKAGRTPNPDILCNKEIKFQAFLDHAIT 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY S++ GD + + R +D +DQ+YFL A Q+ FPLGD+ Sbjct: 120 LGADYIATGHY--SQVSHGDKAQ----LLRAVDTNKDQTYFLHAVDYQKFDRTLFPLGDL 173 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E G D K DS ICF+ + ++ D +++ A G I +G ++G+ Sbjct: 174 EKPEVRRIAEEKGFDNHKKKDSTGICFIGERRFKDFLEQYLP--AQPGTIEDDHGNVIGK 231 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308 +G++ YT+GQR+GLG+ A P +V LD+N + G L +Y RE+ Sbjct: 232 QDGLMYYTLGQRQGLGIGGLASASEAPWYVAGKDLDRNVLIAVQGTDHPL----LYSREL 287 Query: 309 N-----WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASG 362 W+ +A + K R Q V +G V+V F++ + V G Sbjct: 288 TSAPMQWVA----LEAPALPARLTAKTRYRQPDQACTVSDAGNGRVHVIFDQPQRAVTPG 343 Query: 363 QACVFYTSDSNEARVLGGGIIS 384 Q+ VFY + LGG +I Sbjct: 344 QSVVFY----DGPVCLGGAVIE 361 >gi|254363194|ref|ZP_04979243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mannheimia haemolytica PHL213] gi|153095088|gb|EDN75639.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mannheimia haemolytica PHL213] Length = 387 Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 124/387 (32%), Positives = 210/387 (54%), Gaps = 29/387 (7%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +L L +N K +V++ MSGGVDSSV A +L++ GY V G+ ++ + + C Sbjct: 16 KLTPEQLAENSKK-KVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 71 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 A ++ DA+ V D + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 72 TAAAELADAQAVADKLGMKLHKINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFK 131 Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L + LGAD +ATGHY+R DD + + R +D +DQSYFL+A ++Q+ Sbjct: 132 AFLEYAAEDLGADYIATGHYVRR---TSDDQDAK--LLRGLDENKDQSYFLYALNKKQIG 186 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 187 QSLFPVGEIEKPIVRAIAEDLGLATAKKKDSTGICFIGERKFKDFLARFLP--AQPGEIR 244 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298 + G+++GRH+G++ +T+GQR+GLG+ +P +VV D ++ +IV +L Sbjct: 245 TVEGKLVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLIVAQGHDNSAL 304 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + +++ W+ + + +C VK R Q + +Q +D+ + V F++ ++ Sbjct: 305 LSSGLIAKQLTWVD----MQPLRENLRCTVKTRYRQADIACEIQVIDDETIRVMFDEPQI 360 Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGGII Sbjct: 361 AVTPGQSAVFYLGEV----CLGGGIIE 383 >gi|205822469|sp|A6T7K3|MNMA_KLEP7 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 368 Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 128/375 (34%), Positives = 202/375 (53%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V DGK + + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 124 IATGHYVR-RADV--DGKSQ--LLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+ L A K DS ICF+ + K+ D + R A G I+ ++G+ +G H G++ Sbjct: 179 RKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKILTVDGEEIGTHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ +P +VV D ++ +IV PR L + ++++W Sbjct: 237 YHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGHDHPR--LMSVGLIAQQLHW 294 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + + + +C VK R Q +P V ++D + V F++ V GQ+ VFY Sbjct: 295 VN----REPLQGTLRCTVKTRYRQTDIPCTVTALDEDRIEVRFDEPVAAVTPGQSAVFYL 350 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 351 GEV----CLGGGIIE 361 >gi|134280393|ref|ZP_01767104.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 305] gi|226198381|ref|ZP_03793950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei Pakistan 9] gi|134248400|gb|EBA48483.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 305] gi|225929564|gb|EEH25582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei Pakistan 9] Length = 377 Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 126/372 (33%), Positives = 177/372 (47%), Gaps = 30/372 (8%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83 +V MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D I Sbjct: 1 MVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVADLI 57 Query: 84 NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143 + ++ +++ V F Y+AG TP P V CN +KF L LGA +AT Sbjct: 58 GIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTIAT 117 Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 GHY R R G R + + D +DQSYFL Q QL FPLG++ K VR++ Sbjct: 118 GHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVREI 172 Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263 A ++GL A K DS ICF+ + + D + R G + +G+ +G H G+ YT Sbjct: 173 AAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAFYT 230 Query: 264 IGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGDGL 315 GQR+G+G+ GEP FV D N+ V+ G L + ++W+ Sbjct: 231 FGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG-- 288 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + DG +C K R Q P Q D+ + F++ + V GQ+ V Y D Sbjct: 289 --EPPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWAVTPGQSAVLYDGD 346 Query: 372 SNEARVLGGGII 383 LGGGII Sbjct: 347 V----CLGGGII 354 >gi|224025546|ref|ZP_03643912.1| hypothetical protein BACCOPRO_02286 [Bacteroides coprophilus DSM 18228] gi|224018782|gb|EEF76780.1| hypothetical protein BACCOPRO_02286 [Bacteroides coprophilus DSM 18228] Length = 361 Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 126/372 (33%), Positives = 185/372 (49%), Gaps = 25/372 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ +V++ MSGG DSSV A LL+ GY+V G+T + Y ++ + DAR Sbjct: 12 KNNKVLLGMSGGTDSSVAAMLLQDAGYEVTGITFRFYEKDFQTEY---------LEDARH 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 +C+ + + H +D E F +I F Y G TP+PC CN +K+ L + + G Sbjct: 63 LCEQLGIRHLTYDAREVFEEQIIHYFIQEYMNGRTPVPCTLCNNQLKWPLLKEIADREGI 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 LATGHY+R + G R + D ++DQS+FL+ Q L FP+G++ K Sbjct: 123 YHLATGHYVRKQTVNG-----RWFIRSGADPDKDQSFFLWGLPQDLLERALFPMGELTKV 177 Query: 199 SVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR++A E G L A K DS +CF + + G G+ + G+ LG+H Sbjct: 178 RVREIAAERGQLKAARKRDSLGVCFCPMDYRTFLKSHVPEGQISPGEFLDEEGRKLGQHE 237 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLREINWLGDGLF 316 G YTIGQRRGLG+ + + LFV +RVIV +LE + L + N + Sbjct: 238 GYPFYTIGQRRGLGIWLNKTLFVKETLPEQNRVIVCDNLRALEKQEMLLTDWNLIDP--- 294 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375 + ++ VKIR + V DG ++V+ + VA GQA VFY D Sbjct: 295 -ETALNHPDVIVKIRYRKQANRCTVTCTGDGCLHVNLHEPLASVAPGQAAVFYRDDL--- 350 Query: 376 RVLGGGIISGSK 387 VLGGGII+ S+ Sbjct: 351 -VLGGGIIATSR 361 >gi|152978287|ref|YP_001343916.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus succinogenes 130Z] gi|205811095|sp|A6VLY4|MNMA_ACTSZ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|150840010|gb|ABR73981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus succinogenes 130Z] Length = 389 Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 132/386 (34%), Positives = 206/386 (53%), Gaps = 29/386 (7%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +L L +N K ++V+V MSGGVDSSV A +L++ GY V G+ ++ + + C Sbjct: 18 KLTPGQLAENGK-IKVIVGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 73 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 A D+ DA+ VCD + + + ++ + + V F S Y AG TP P + CN+ +KF Sbjct: 74 TAAADLADAQAVCDKLGIRLHKINFATEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFK 133 Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L + LGAD +ATGHY+R G D + R +D +DQSYFL A +++Q+ Sbjct: 134 AFLEYAAEDLGADYIATGHYVRRS---GPDHDAH--LLRGLDNNKDQSYFLHALSKKQVG 188 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 FP+G+++K VR +A E+GL A K DS ICF+ + K+ D + R A GDI Sbjct: 189 QSLFPVGEVEKTVVRAVAEELGLITAKKKDSTGICFIGERKFKDFLARFLP--AQPGDIK 246 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGP---RESL 298 G+++GRH G++ +T+GQR+GLG+ +VV D ++ ++V +L Sbjct: 247 TTEGEVIGRHQGLMYHTLGQRKGLGIGGIKGKDENAWYVVEKDLKNNVLVVAQGHDNSAL 306 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEV 357 + + +++ W+ E + C VK R Q + V NDD V V F++ ++ Sbjct: 307 QSSGLIAKQLTWVS----EQPLRKTLHCTVKTRYRQTDIACEVVPVNDDTVEVHFDEPQI 362 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 V GQ+ VFY + LGGGII Sbjct: 363 AVTPGQSAVFYQGE----ECLGGGII 384 >gi|262281666|ref|ZP_06059435.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus sp. 2_1_36FAA] gi|262262120|gb|EEY80817.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus sp. 2_1_36FAA] Length = 373 Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 135/379 (35%), Positives = 198/379 (52%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYAQ----VKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS ICF+ + + + + + A G ++ L G+ +G+H G++ Sbjct: 181 AIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ EP FVV D + + + VG ++L + ++++ + Sbjct: 239 YTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHFTKE 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ C K R Q V V D V+F++ + V GQA VFY D Sbjct: 299 -MPEEFTME---CTAKFRYRQPDSKVTVTVKGDKAVVNFDQPQRAVTPGQAVVFYDGD-- 352 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I + ++ V Sbjct: 353 --ECLGGGLIDKAYKNGQV 369 >gi|326569370|gb|EGE19430.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis BC8] Length = 392 Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 135/389 (34%), Positives = 207/389 (53%), Gaps = 34/389 (8%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K KD++V+V MSGGVDSSV A LL++ G+ V G+ ++ + S+ C A D+ D Sbjct: 15 KALKDIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSEY---CTAMTDLAD 71 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ V D I + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 72 AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131 Query: 136 ----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R DGK + + R +D +DQSYFL A ++ FP Sbjct: 132 PQFGLGADFIATGHYARRGF--SQDGKAQ--LLRGLDANKDQSYFLHAVGGDKIAKTLFP 187 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 +G+++K VR +A++ L A+K DS ICF+ + K+ D +++ A +GDI +G Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 +G H+G++ YTIGQR G+G+ EP FV++ D ++R+IVG L+ + Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSDEL 305 Query: 304 YLREINWLGDGLFEDAVV---DGFKCFVKIR---SSQDPVPVFVQRNDDGVYVDFEKSEV 357 +++W G+ A + GF+C K R S QD + D V V F+ ++ Sbjct: 306 TAYKLDW---GIAPPAQIFGKQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFDDAQR 362 Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGS 386 V GQ+ VFY D LGGG+I G+ Sbjct: 363 AVTQGQSVVFYDGDI----CLGGGVIDGT 387 >gi|254492565|ref|ZP_05105737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylophaga thiooxidans DMS010] gi|224462457|gb|EEF78734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylophaga thiooxydans DMS010] Length = 367 Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 123/375 (32%), Positives = 190/375 (50%), Gaps = 30/375 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +VVV +SGGVDSSV A LL + V G+ ++ + + C +D DA Sbjct: 3 ENKKVVVGLSGGVDSSVAALLLNQQHEQVEGLFMKNWVD---FADESECTVEEDRKDAMS 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V +T+ + + ++ + + V F Y AG TP P + CNR +KF L +LG Sbjct: 60 VAETVGIDFHEANFAMEYWDYVFKHFLDEYRAGRTPNPDILCNREIKFKAFLDHAMELGG 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 ++ATGHY R DGK + + +D ++DQSYFL+ QQQL FPLG++ K Sbjct: 120 VLIATGHYAR---VAERDGKFH--LLKGLDDKKDQSYFLYTLGQQQLSRTLFPLGELPKT 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A + G DK DS ICF+ + + + + R A G++ +G+ +G H G Sbjct: 175 EVRQIAEQAGFINHDKKDSTGICFIGERHFREFLSRYIP--AQPGEMRTPDGEKIGEHAG 232 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSS--RVIVGPRESLEVHRIYLREINWL 311 ++ YT+GQR+GLG+ + GEP FV D + V+ G L + +++W+ Sbjct: 233 LMYYTLGQRQGLGIGGRKNSTGEPWFVAGKDMENRILYVVQGDHPWLWSQNLTAEQLSWV 292 Query: 312 GDGLFEDAVVDGFKC--FVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 E F C K R Q P + ++D+G ++V+F+ + V GQ+ VFY Sbjct: 293 AGEEPE------FPCRAAAKTRYRQPDQPCTISKDDNGLIHVEFDDKQRAVTPGQSVVFY 346 Query: 369 TSDSNEARVLGGGII 383 D LGGGII Sbjct: 347 QQDD----CLGGGII 357 >gi|317484664|ref|ZP_07943565.1| tRNA methyl transferase [Bilophila wadsworthia 3_1_6] gi|316924020|gb|EFV45205.1| tRNA methyl transferase [Bilophila wadsworthia 3_1_6] Length = 356 Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 124/373 (33%), Positives = 186/373 (49%), Gaps = 31/373 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + VA+SGG DS A L+R+ G + + +K + + G +V C Sbjct: 1 MTIAVAVSGGADSLYAMASLQRE---YPGQVIAFHALQKETSPEDDPVPGLEV-----SC 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + V ++ D +E F ++ PFA SYA GETP PCV CN VKF + R+LGAD Sbjct: 53 RALGVPLHILDLQEAFFRQIVRPFAESYAHGETPNPCVRCNALVKFGLWMDEARKLGADR 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY+ + + + + + D +DQSYFL T +L + FPL ++K V Sbjct: 113 LATGHYVS----LAEHPRYGMALHQGADEAKDQSYFLALTPISRLKNAVFPLARVRKSEV 168 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R E GL + +SQ+ICFV Y +K I + G +V L+G ++GRH G+ Sbjct: 169 RAALAEWGLSVPLPRESQEICFVPDDDYRAFLKGIGVRLPAGGPMVLLDGHVVGRHGGLW 228 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YT GQRRGLGV+ EPL+V+ D++ + +++G + L V+ E+N+L Sbjct: 229 QYTEGQRRGLGVSWTEPLYVIGKDRSRNALLLGTADELPVNACAAGELNFL-----VPPE 283 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG---------VYVDFEKSEVGVASGQ-ACVFYTS 370 + + V+ R Q VP ++ G + + F + ++ A GQ A VF Sbjct: 284 LWPHELRVRTRYRQKAVPADIRLVGGGESGMDATARMLIRFHQPQLPSAPGQLAAVF--- 340 Query: 371 DSNEARVLGGGII 383 VL GGII Sbjct: 341 -DEHGHVLAGGII 352 >gi|262368696|ref|ZP_06062025.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter johnsonii SH046] gi|262316374|gb|EEY97412.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter johnsonii SH046] Length = 377 Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 123/375 (32%), Positives = 197/375 (52%), Gaps = 25/375 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 4 RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAVCD 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + ++ + + V F + YAAG TP P + CN+ +KF L QLGAD + Sbjct: 61 KLGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMQLGADFI 120 Query: 142 ATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY R G+ + R +D +DQ+YFL A +++ FP+G+++K V Sbjct: 121 ATGHYARRGETMTNSKGEEYAPLLRGLDKNKDQTYFLHAVHGREINKTLFPVGEIEKPEV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + L A K DS ICF+ + ++ D +K+ A G IV +G+ +G H+G++ Sbjct: 181 RKIAEQYDLVTAKKKDSTGICFIGERRFNDFLKQYLPAQA--GKIVLDDGKEVGEHHGLM 238 Query: 261 NYT------IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWL 311 YT IG GVA G FV++ D ++R+++G ++ ++ I+W+ Sbjct: 239 YYTLGQRGGIGIGGLKGVAEG-AWFVLHKDIENNRLVIGQGHEHPLMQSTTLWSETIDWV 297 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVASGQACVFY 368 + GF+C + R QD + GV V+F++ + V GQ+ VFY Sbjct: 298 AGEM--QIPETGFRCTSRTRYRQDDQDCVIFNDPTTPGGVRVEFDEPQRAVTPGQSVVFY 355 Query: 369 TSDSNEARVLGGGII 383 + + LGGG+I Sbjct: 356 SGEV----CLGGGVI 366 >gi|225853749|ref|YP_002735261.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae JJA] gi|254811466|sp|C1CBU0|MNMA_STRZJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|225723263|gb|ACO19116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae JJA] Length = 373 Score = 186 bits (471), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 137/379 (36%), Positives = 198/379 (52%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +R+ +DG M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHY--ARVVRDEDGTVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G++ Sbjct: 181 KLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ P FVV + + + VG +SL + ++++ D Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKALSKNILYVGQGFYHDSLMSTSLEASQVHFTCD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ C K R Q V V D V F + + + GQA VFY + Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE-- 352 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I + R V Sbjct: 353 --ECLGGGLIDNAYRDGQV 369 >gi|303251982|ref|ZP_07338153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247144|ref|ZP_07529196.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649412|gb|EFL79597.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856393|gb|EFM88544.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 389 Score = 186 bits (471), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 125/387 (32%), Positives = 211/387 (54%), Gaps = 29/387 (7%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +L + L +N K +V++ MSGGVDSSV A +L++ GY V G+ ++ + + C Sbjct: 18 KLTAEQLAENAKK-KVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 73 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 A D+ DA+ V D + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 74 TAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKEIKFK 133 Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L + LGAD +ATGHY+R GDD + + R +D +DQSYFL+ + +Q+ Sbjct: 134 AFLEYAAEDLGADYIATGHYVRRS---GDDNNVQ--LLRGLDANKDQSYFLYTLSHKQVG 188 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 FP+GD++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 189 QSLFPVGDIEKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQPGEIR 246 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298 + G+++GRH+G++ +T+GQR+GLG+ +P +VV D ++ ++V +L Sbjct: 247 TVGGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHDNSAL 306 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + +++W+ + + +C VK R Q + +Q +DD + V F++ ++ Sbjct: 307 LSSGLIATQLHWVD----RQPIRENLRCTVKTRYRQTDIACEIQPIDDDTIRVIFDEPQI 362 Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGG+I Sbjct: 363 AVTPGQSAVFYQGEV----CLGGGVIE 385 >gi|257459254|ref|ZP_05624371.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter gracilis RM3268] gi|257443353|gb|EEV18479.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter gracilis RM3268] Length = 343 Score = 186 bits (471), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 125/367 (34%), Positives = 186/367 (50%), Gaps = 29/367 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++++AMSGGVDSS+ A LL+ G++V G ++L+ + G A ++ R+V Sbjct: 1 MKILIAMSGGVDSSMCAKLLQDAGHEVQGCYMKLH------AKPGYHEA--NIAKVRKVG 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + ++ D ++ F V PF +Y G TP PC CNR +K LL R+ G + Sbjct: 53 EFLGIKIHILDLQDDFNRDVYEPFVQAYIGGLTPNPCALCNRRIKLGKLLEFAREQGFER 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY+R +DG ++ DL +DQSYFL L + FPLG M K+ V Sbjct: 113 LATGHYVRI-----EDG----LLKAAADLSKDQSYFLANIDPAALEFMLFPLGGMYKKDV 163 Query: 201 RDLAREMG--LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 ++ AR IA S+S +ICFV Y DV+ R + G + G + G +G H G Sbjct: 164 KEAARAYAELSQIASASESSEICFVDT-TYIDVLNR-HTGTKMPGIVRDRAGNAIGTHEG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V EP FV+ +D + + ++VG +E L + N L Sbjct: 222 YMHYTIGKRRGFTVHGAHEPHFVLSIDPHKNEIVVGGKEELATYEFDTENFNNF---LSR 278 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 D +++ VKIR +PV + R D GV+ G+A Q VFY R Sbjct: 279 DEILNMPGLGVKIRYRSAKLPVKISPREDGGVHAVLSAPAAGIAPAQLAVFY---DERDR 335 Query: 377 VLGGGII 383 V+ G I Sbjct: 336 VVASGFI 342 >gi|255066218|ref|ZP_05318073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria sicca ATCC 29256] gi|255049428|gb|EET44892.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria sicca ATCC 29256] Length = 367 Score = 186 bits (471), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 131/383 (34%), Positives = 195/383 (50%), Gaps = 26/383 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 +D+ + P + ++V +SGGVDSSV AALLK++GY V GV +Q + + C Q Sbjct: 1 MDITQQPSN--IIVGLSGGVDSSVTAALLKQEGYQVRGVFMQNWEDDDNDEY---CSIKQ 55 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D I + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 56 DSFDAIAVADIIGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLD 115 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 116 YAIEQGADTIATGHYARKEVRNG-----THYLLKGLDQNKDQSYFLYRLKPFQLERAIFP 170 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LGD++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 171 LGDLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGK 228 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308 +G H G++ YT+GQR+GLG+ GEP FV L KN V+ G L +Y R + Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 284 Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 N L L E + C + R + P + +D+ V + F++ + V GQ+ V Sbjct: 285 VMNDLSFTLPERPKEGRYTCKTRYRMADAPCEL-RYLDDETVELVFDEPQWAVTPGQSAV 343 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 Y D LGGGII + + Sbjct: 344 LYDGDV----CLGGGIIMSTDKP 362 >gi|194398405|ref|YP_002036838.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae G54] gi|229487424|sp|B5E605|MNMA_STRP4 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|194358072|gb|ACF56520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae G54] Length = 373 Score = 186 bits (471), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 139/385 (36%), Positives = 194/385 (50%), Gaps = 37/385 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYXXAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G++ Sbjct: 181 KLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYL-RE 307 YTIGQR GLG+ P FVV D + + + VG SLE +++ RE Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRE 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 + E+ ++ C K R Q V V D V F + + + GQA VF Sbjct: 299 MP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVF 348 Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392 Y + LGGG+I + R V Sbjct: 349 YDGE----ECLGGGLIDNAYRDGQV 369 >gi|15900060|ref|NP_344664.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae TIGR4] gi|111656982|ref|ZP_01407790.1| hypothetical protein SpneT_02001784 [Streptococcus pneumoniae TIGR4] gi|225860166|ref|YP_002741675.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae Taiwan19F-14] gi|298229174|ref|ZP_06962855.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255779|ref|ZP_06979365.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501928|ref|YP_003723868.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|24638327|sp|Q97T38|MNMA_STRPN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|254811468|sp|C1CP03|MNMA_STRZT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|14971585|gb|AAK74304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae TIGR4] gi|225726555|gb|ACO22406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae Taiwan19F-14] gi|298237523|gb|ADI68654.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|327390539|gb|EGE88879.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae GA04375] Length = 373 Score = 185 bits (470), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 139/385 (36%), Positives = 195/385 (50%), Gaps = 37/385 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G++ Sbjct: 181 RLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYL-RE 307 YTIGQR GLG+ P FVV D + + + VG SLE +++ RE Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQVHFTRE 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 + E+ ++ C K R Q V V + V F + + + GQA VF Sbjct: 299 MP-------EEFTLE---CTAKFRYRQPDSKVTVHVKGEKTEVIFAEPQRAITPGQAVVF 348 Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392 Y + LGGG+I + R V Sbjct: 349 YDGE----ECLGGGLIDNAYRDGQV 369 >gi|206576946|ref|YP_002239233.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Klebsiella pneumoniae 342] gi|229486343|sp|B5XSN3|MNMA_KLEP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|206566004|gb|ACI07780.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Klebsiella pneumoniae 342] Length = 368 Score = 185 bits (470), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 128/375 (34%), Positives = 202/375 (53%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V DGK + + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 124 IATGHYVR-RADV--DGKSQ--LLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+ L A K DS ICF+ + K+ D + R A G I+ ++G+ +G H G++ Sbjct: 179 RKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKILTVDGEEIGTHQGLM 236 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ +P +VV D ++ +IV PR L + ++++W Sbjct: 237 YHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGHDHPR--LMSVGLIAQQLHW 294 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + + + +C VK R Q +P V ++D + V F++ V GQ+ VFY Sbjct: 295 VD----REPLQGTLRCTVKTRYRQTDIPCTVTALDEDRIEVRFDEPVAAVTPGQSAVFYL 350 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 351 GEV----CLGGGIIE 361 >gi|322378861|ref|ZP_08053278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter suis HS1] gi|322379966|ref|ZP_08054241.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter suis HS5] gi|321147605|gb|EFX42230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter suis HS5] gi|321148671|gb|EFX43154.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter suis HS1] Length = 345 Score = 185 bits (470), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 126/374 (33%), Positives = 188/374 (50%), Gaps = 38/374 (10%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ V MSGGVDSS A LLK+ G+D++G+ L+L+ + C + V Sbjct: 1 MKIAVLMSGGVDSSYSAYLLKQAGHDLLGLYLKLHGKEEKHAFYIKNC--------QEVA 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +N+ V D +E F+ V F +Y G+TP PC CN +KF L G + Sbjct: 53 SFLNIPFEVVDLQEPFKKQVYEVFIDTYKNGQTPNPCALCNPLMKFGLGLEFALDRGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + D RI DL +DQSYFL+A Q + L FPLG + K + Sbjct: 113 VATGHYAR----LMDLEGVLRIQ-EAFDLSKDQSYFLYALPQHAIDALMFPLGGLLKSEI 167 Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 + A E +G D+ +SQ+ICFV +G Y D +K+ + + +G + +L G+++G H Sbjct: 168 KPKALEAMPFLG-DLQTYKESQEICFV-EGSYIDTLKQ-HIDVDQKGLVRNLKGEVVGTH 224 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G ++YTIG+R+G V P FVV + ++ +IVG +E L + + Sbjct: 225 KGYMHYTIGKRKGFTVQGAHTPHFVVGIHAKANEIIVGEKEDLAIFTLEAE--------- 275 Query: 316 FEDAVVDGFKC---FVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 ++ FK VK+R P + N ++ FE+ GVA GQA V Y D Sbjct: 276 -NKSLPSNFKTGTYMVKVRYRSTPTKAKISLNHQTIHATFEEPVYGVALGQALVIYEKDC 334 Query: 373 NEARVLGGGIISGS 386 VLGGG+I+ S Sbjct: 335 ----VLGGGVITKS 344 >gi|325689331|gb|EGD31337.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis SK115] Length = 373 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 135/379 (35%), Positives = 197/379 (51%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWERVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYAQ----VKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS ICF+ + + + + + A G ++ L G+ +G+H G++ Sbjct: 181 AIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ EP FVV D + + + VG ++L + ++++ + Sbjct: 239 YTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHFTKE 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ C K R Q V V D V+F++ + V GQA VFY D Sbjct: 299 -MPEEFTIE---CTAKFRYRQPDSKVTVTVKGDKAVVNFDQPQRAVTPGQAVVFYDGD-- 352 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I + ++ V Sbjct: 353 --ECLGGGLIDRAYKNGQV 369 >gi|293977825|ref|YP_003543255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Sulcia muelleri DMIN] gi|292667756|gb|ADE35391.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Sulcia muelleri DMIN] Length = 380 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 123/391 (31%), Positives = 195/391 (49%), Gaps = 43/391 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV A LLK+ GYDVIG+ ++ YN C +D DA V Sbjct: 5 RVIVGMSGGVDSSVAALLLKKQGYDVIGIFMKYYNFD------NKCPWREDSIDAMLVSQ 58 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 ++ + Y+ D + ++N +I Y G TP P + CN +KF L + L +D + Sbjct: 59 SLKIPFYIIDITKNYKNLIIDYLYKEYKKGYTPNPDIICNSKIKFKFFLEKSIFLKSDFI 118 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R + + ++GK + +D +DQSYFL + Q+ FPLG + K+ VR Sbjct: 119 ATGHYVRKKE-INENGKISYKIISGIDSNKDQSYFLCKLNKVQIKKSIFPLGWLNKKEVR 177 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN------------ 249 ++A + L A+K DSQ ICF+ + K+ + +K+ A +G I+ +N Sbjct: 178 EIANKYNLINANKKDSQGICFIGKIKFLNFLKKKLA--EKKGIIIEINKNSHIFKYKQNK 235 Query: 250 ------------GQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG--- 293 G+I+G H G +T GQR+GL + PLFV+ D + + VG Sbjct: 236 LFYKKIEYKKEYGKIIGHHIGAHYFTKGQRKGLKIGGYKYPLFVIEKDITKNILYVGMGK 295 Query: 294 PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFE 353 L I +++ N + +C ++ R + ++ + ND +YV+FE Sbjct: 296 NHPGLYTKVICIKKYNIHWINKKKIKTKIEVECRIRYRQNFKKATLYKKNND--LYVEFE 353 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 ++ V GQ V+Y ++ V+G G+IS Sbjct: 354 IPQLAVNGGQFIVWYINNE----VIGSGLIS 380 >gi|126207646|ref|YP_001052871.1| tRNA-specific 2-thiouridylase MnmA [Actinobacillus pleuropneumoniae L20] gi|205811077|sp|A3MYN0|MNMA_ACTP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|126096438|gb|ABN73266.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 389 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 125/387 (32%), Positives = 210/387 (54%), Gaps = 29/387 (7%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +L + L +N K +V++ MSGGVDSSV A +L++ GY V G+ ++ + + C Sbjct: 18 KLTAEQLAENAKK-KVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 73 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 A D+ DA+ V D + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 74 TAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKEIKFK 133 Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L + LGAD +ATGHY+R GDD + + R +D +DQSYFL+ + +Q+ Sbjct: 134 AFLEYAAEDLGADYIATGHYVRRS---GDDNNAQ--LLRGLDANKDQSYFLYTLSHKQVG 188 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 FP+GD++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 189 QSLFPVGDIEKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQPGEIR 246 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298 + G+++GRH+G++ +T+GQR+GLG+ +P +VV D ++ ++V +L Sbjct: 247 TVGGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHDNSAL 306 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + +++W+ + + +C VK R Q + +Q +DD + V F+ ++ Sbjct: 307 LSSGLIATQLHWVD----RQPIRENLRCTVKTRYRQTDIACEIQPIDDDTIRVIFDDPQI 362 Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGG+I Sbjct: 363 AVTPGQSAVFYQGEV----CLGGGVIE 385 >gi|81428407|ref|YP_395407.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase [Lactobacillus sakei subsp. sakei 23K] gi|123564381|sp|Q38XI3|MNMA_LACSS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|78610049|emb|CAI55098.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus sakei subsp. sakei 23K] Length = 379 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 134/372 (36%), Positives = 185/372 (49%), Gaps = 25/372 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + RVVV MSGGVDSSV A LLK+ GYDVIGV ++ ++ + G C A +D D +V Sbjct: 6 NTRVVVGMSGGVDSSVTALLLKQQGYDVIGVFMKNWDD---TDENGVCTATEDYEDVAKV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 I + +Y ++E+ + + V F Y G TP P V CN+ VKF L +L AD Sbjct: 63 ASKIGIPYYSVNFEKEYWDRVFEYFLDEYKHGRTPNPDVMCNKEVKFKAFLDYAMELDAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +A GHY + + D M R D +DQ+YFL A +Q QL FP+G M+K Sbjct: 123 FIAMGHYAQ----IERDENGIAHMLRGGDSNKDQTYFLSALSQDQLQKSMFPIGHMQKSE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA E GL A K DS ICF+ + + + A G ++ ++G G H+G+ Sbjct: 179 VRRLAEEAGLATAKKKDSTGICFIGERNFKQFLGEYLP--AQPGKMMTVDGLEKGTHDGL 236 Query: 260 INYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 + YTIGQR GLG+ +P FVV D + + VG E L ++ ++ W+ Sbjct: 237 MYYTIGQRSGLGIGGGGESNDPWFVVGKDLEQNILYVGQGYHNELLYADQLDASKMTWIT 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371 D D F C K R Q V + V + V F+ + GQA VFY Sbjct: 297 P---VDHGTD-FHCTAKFRYRQQDVGITVHMTSETTATVVFDAPVRAITPGQAVVFY--- 349 Query: 372 SNEARVLGGGII 383 + A LGGG I Sbjct: 350 -DGAECLGGGTI 360 >gi|319940179|ref|ZP_08014532.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus anginosus 1_2_62CV] gi|319810650|gb|EFW06980.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus anginosus 1_2_62CV] Length = 373 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 133/383 (34%), Positives = 201/383 (52%), Gaps = 25/383 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R++ +DG M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYARAKR--DEDGIVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKSEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G++ Sbjct: 181 AIAEKAGLATAKKKDSTGICFIGEKNFKEFLG--NYLPAQPGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ EP FVV D + + + VG ++L + ++++ Sbjct: 239 YTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYNDNLMSTSLDASQVHFTRK 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 E + +C K R Q V V D V+F + + + GQA VFY + Sbjct: 299 MPAEFTM----ECTAKFRYRQPDSKVTVTVKGDKAIVNFAEPQRAITPGQAVVFYDGE-- 352 Query: 374 EARVLGGGIISGSKRSDAVEESL 396 LGGG+I + + +++ + Sbjct: 353 --ECLGGGLIDNAYKDGKLQQYI 373 >gi|269793188|ref|YP_003318092.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100823|gb|ACZ19810.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 346 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 132/351 (37%), Positives = 173/351 (49%), Gaps = 26/351 (7%) Query: 25 VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84 V MSGGVDSSV A +LK +G+ +GVTL + S + V ARR + + Sbjct: 8 VLMSGGVDSSVTAMILKGEGHRPLGVTLLMSPSSSECS--------RSVQLARRTAEILG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD--VLA 142 + H V D + FR V+ F + Y AG TP PC DCNR VK L ++G D +A Sbjct: 60 IRHTVLDLRDLFRRHVMDKFRTEYMAGRTPNPCSDCNRNVKLGGLAERLDRMGLDGIPMA 119 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R + D M +D RDQSYFL + + L FPLG M KE VR Sbjct: 120 TGHYAR---ILKDPAGAHLAMG--LDHRRDQSYFLAEVPKGIIRRLMFPLGGMTKEQVRL 174 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA E L ++DS D CFV+ G Y +V+ + I +G IV L G +LG H G + Sbjct: 175 LAEEARLPARREADSMDSCFVEDGDYREVIGPV---IDSQGPIVDLRGNVLGIHQGFHRF 231 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 T+GQR+GLGV+ E L+V +D + V+V PR+ L + NWL +G Sbjct: 232 TVGQRKGLGVSSTEALYVKRIDPPT--VVVAPRDRLMERHVTASGGNWLEEGDLR----C 285 Query: 323 GFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV-GVASGQACVFYTSD 371 G + K RS P P V+ D + V F V GQ V Y D Sbjct: 286 GAQLLGKTRSQGRPSPCTVEEVEGDRIRVLFHGEGVFAPCPGQRLVLYRPD 336 >gi|328945150|gb|EGG39305.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis SK1087] Length = 373 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 134/380 (35%), Positives = 199/380 (52%), Gaps = 25/380 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V Sbjct: 7 IRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDVAAVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 64 DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K V Sbjct: 124 VATGHYAQ----VKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A GL A K DS ICF+ + + + + + A G ++ L G+ +G+H G++ Sbjct: 180 RAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQHAGLM 237 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YTIGQR GLG+ EP FVV D + + + VG ++L + ++++ Sbjct: 238 YYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHFTK 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + + E+ ++ C K R Q V V D V+F++ + + GQA VFY D Sbjct: 298 E-MPEEFTME---CTAKFRYRQPDSKVTVTVKGDKAAVNFDQPQRAITPGQAVVFYDGD- 352 Query: 373 NEARVLGGGIISGSKRSDAV 392 LGGG+I + ++ V Sbjct: 353 ---ECLGGGLIDRAYKNGQV 369 >gi|325285134|ref|YP_004260924.1| tRNA-specific 2-thiouridylase mnmA [Cellulophaga lytica DSM 7489] gi|324320588|gb|ADY28053.1| tRNA-specific 2-thiouridylase mnmA [Cellulophaga lytica DSM 7489] Length = 396 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 128/401 (31%), Positives = 202/401 (50%), Gaps = 45/401 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV A LLK GYDVIG+ ++ ++ + C +D DA V + Sbjct: 3 KVVVGLSGGVDSSVTAYLLKEQGYDVIGLFMKNWHDDSVT-ISNECPWLEDSNDALIVAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + D ++ ++ + Y G TP P V CNR +KF + + QLGAD + Sbjct: 62 KLGIPFQTVDLSAEYKERIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMKIAMQLGADYV 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R ++ ++GK + D +DQSYFL +Q+QL FP+GD+ K VR Sbjct: 122 ATGHYCRKTSFINEEGKEIHQLLAGKDGNKDQSYFLCQLSQEQLSKTLFPIGDLLKPEVR 181 Query: 202 DLAREMGLDIADKSDSQDICFV---------------QQGKYFDV---VKRINAGI---A 240 +A + L ADK DSQ +CF+ +QG +V +++ N I A Sbjct: 182 KIAADNDLITADKKDSQGLCFIGKVRLPDFLQQKLKPKQGVIVEVSSSLEQYNNAIPEFA 241 Query: 241 LEGD---------IVHLN-GQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSR 289 + D + +LN G+++G H G +T GQR+GL V EPLFV+ D + + Sbjct: 242 TKEDELAFYATKPVYNLNDGKVVGEHQGAHYFTKGQRKGLAVGGTKEPLFVIETDVDENV 301 Query: 290 VIVGP-RESLEVHRIYL----REINWL-GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR 343 + G ++ ++R L E++W+ D E V + + +IR Q + + Sbjct: 302 IYTGQGKKHPGLYRKTLFVSNEELHWVRTDMALE--VDETMEVMARIRYRQALQKATLYK 359 Query: 344 NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 D G+YVDF++ + + GQ ++ D ++G G+IS Sbjct: 360 VDTGLYVDFKEEQSAMTEGQFVAWHIGD----ELIGSGVIS 396 >gi|205822104|sp|Q65VV2|MNMA_MANSM RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 389 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 130/387 (33%), Positives = 212/387 (54%), Gaps = 29/387 (7%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +L++ L +N K +V+V MSGGVDSSV A +L++ GY V G+ ++ + + C Sbjct: 18 KLSAEQLAENAKK-KVIVGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YC 73 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 A D+ DA+ V D + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 74 TAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFK 133 Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L + LGAD +ATGHY+R R GDD R + R +D +DQSYFL+ + +Q+ Sbjct: 134 AFLEYAAEDLGADYIATGHYVRRR---GDDENAR--LLRGLDSNKDQSYFLYTLSHKQVG 188 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 FP+GD++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 189 QSLFPVGDIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARFLP--AQPGEIR 246 Query: 247 HLNGQILGRHNGIINYTIGQR----RGLGVAMGE-PLFVVYLDKNSSRVIVGP---RESL 298 ++G+++GRH+G++ YT+GQR G M E P +V D ++ +IV +L Sbjct: 247 TVDGKVIGRHDGLMYYTLGQRKGLGIGGIKGMDENPFYVAEKDLVNNVLIVAQGHDNSAL 306 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + R+++W+ + + +C VK R Q +P +Q +D+ + V F++ ++ Sbjct: 307 LSSGLIARQLHWVD----RQPIRENLRCTVKTRYRQTDIPCEIQPIDDETIRVIFDEPQI 362 Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGG+I Sbjct: 363 AVTPGQSAVFYQGEV----CLGGGVIE 385 >gi|261339434|ref|ZP_05967292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterobacter cancerogenus ATCC 35316] gi|288318240|gb|EFC57178.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterobacter cancerogenus ATCC 35316] Length = 370 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 125/375 (33%), Positives = 199/375 (53%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 125 IATGHYVRRA-----DVNGKSQLLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + L A K DS ICF+ + K+ + + R A G IV ++G +G+H G++ Sbjct: 180 RKIAEALDLITAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIVTVDGDEIGQHQGLM 237 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ +P +VV D ++ +IV PR L + ++++W Sbjct: 238 YHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGHDHPR--LMSVGLIAQQLHW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + + V +C VK R Q +P V +DD + V F++ V GQ+ VFY+ Sbjct: 296 VD----REPVKGTLRCTVKTRYRQTDIPCTVTALDDDRIDVRFDEPVAAVTPGQSAVFYS 351 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 GEI----CLGGGIIE 362 >gi|330833760|ref|YP_004402585.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis ST3] gi|329307983|gb|AEB82399.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis ST3] Length = 419 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 136/372 (36%), Positives = 197/372 (52%), Gaps = 29/372 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 54 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDYKDVAAVAD 110 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 111 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMNLGADYV 170 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +++ +DG M R D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 171 ATGHY--AQVSRDEDGTVH--MLRGADNGKDQTYFLSQLSQEQLQKTMFPLGHLQKPQVR 226 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A GL A K DS ICF+ + + + + + A G ++ ++G+ +G H G++ Sbjct: 227 EIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLP--AQPGRMMTVDGRDMGEHTGLMY 284 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ EP FVV D + + + VG ESL + ++++ D Sbjct: 285 YTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVGQGFYHESLMSTSLQASQVHFTRD 344 Query: 314 GLFEDAVVDGFK--CFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + + FK C K R Q V V+ D V F + + + G+A VFY D Sbjct: 345 ------MPEEFKLECTAKFRYRQPDSQVTVKVKGDKAEVIFAEPQRAITPGKAVVFY--D 396 Query: 372 SNEARVLGGGII 383 E LGGG+I Sbjct: 397 GQEC--LGGGMI 406 >gi|295394424|ref|ZP_06804648.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brevibacterium mcbrellneri ATCC 49030] gi|294972776|gb|EFG48627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brevibacterium mcbrellneri ATCC 49030] Length = 387 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 142/400 (35%), Positives = 200/400 (50%), Gaps = 47/400 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+++ AMSGGVDS+V AA G++V+GV L L + + R GS CC +D DA R Sbjct: 1 MKILAAMSGGVDSAVAAARAVDAGHEVVGVHLAL-SRMPGTMRTGSRGCCTIEDSRDAHR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + YV+D+ ERF+ ++ F + Y+ G TP PC+ CN +KF+ LL LG Sbjct: 60 VAGMLGIPFYVWDFSERFKEDIVDDFIAEYSQGRTPNPCMRCNERIKFAALLDRALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG-DMKK 197 D +ATGHY + + DG + R +D+ +DQSY L T+ QL FP+G K Sbjct: 120 DAVATGHY--AEIVYDQDGHPE--LHRGVDMNKDQSYVLGVLTEDQLRHCYFPIGASASK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRH 256 VR A + G +A+K DS DICF+ G D + I + G I G LG H Sbjct: 176 ADVRAEAADRGFPVANKPDSYDICFIPDG---DTKAWLADKIPMRPGLIKDQEGNALGEH 232 Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G + +TIGQR+GL + A G+P +VV +D ++ V VG RE+L V R+ W G Sbjct: 233 DGAMTFTIGQRKGLALERPAADGKPRYVVDIDARNNTVTVGGREALSVDRLEGIRATWCG 292 Query: 313 D-----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-------------------DGV 348 G ED +D C V+IR+ +PV V D + Sbjct: 293 QPAQNMGDSEDTALD---CEVQIRAHAEPVSARVWLGDVVTQAPESEYNVPTPRPAGQTL 349 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388 +V ++ GVA GQ V Y RVLG I + R Sbjct: 350 HVAVKEPLSGVAPGQTMVIYEG----TRVLGQATIDRANR 385 >gi|255994055|ref|ZP_05427190.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium saphenum ATCC 49989] gi|255993723|gb|EEU03812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium saphenum ATCC 49989] Length = 348 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 121/380 (31%), Positives = 198/380 (52%), Gaps = 40/380 (10%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 +D+ +V V SGGVDS+ LLK GYDV V L++ + +D+ Sbjct: 1 MDRLGDKTKVAVGFSGGVDSTAACLLLKEKGYDVHPVYLRMGEA-------------EDI 47 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 + +++ + I + V D +RF N+V+ F +Y G TP PC+ CN VKF L+ Sbjct: 48 SELKKIANDIGLELKVLDLTDRFNNSVVDNFKKAYMNGMTPNPCIVCNPLVKFRGLMDFA 107 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 G D++ATGHY R + GD+ ++CR + ++DQSY L+ L PLG Sbjct: 108 DDNGIDLIATGHYARI-VKNGDN----PVLCRGRNAQKDQSYMLYGLDSNVFERLILPLG 162 Query: 194 DM-KKESVRDLAREMGLDIADKSDSQDICFVQQ----GKYFDVVKRINAGIALEGDIVHL 248 + KE +R++ R + ++K DSQ+ICF++Q K+F EG+ V Sbjct: 163 EYGNKEDIRNILRTNEIINSEKPDSQEICFLKQDESYKKFFP---------EREGEFVDA 213 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 G ILGRH GI N+T+GQR+GLG+ +P++V+ + +++RV++G E L R + ++ Sbjct: 214 EGNILGRHRGIHNFTVGQRKGLGITFSKPMYVLGIAASTNRVMLGSEEELYKERATITDM 273 Query: 309 NWLGDGL---FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 +LG+ + +DA ++ V+ S++ + + D + + F + +A GQ+ Sbjct: 274 KYLGNDISKCTDDAHKGLYRAKVRYSSAEYEIKEINLKGSD-LEIVFNEPVRAIAPGQSL 332 Query: 366 VFYTSDSNEARVLGGGIISG 385 V Y D V+ GGII G Sbjct: 333 VVYCRDV----VILGGIIVG 348 >gi|52424356|ref|YP_087493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mannheimia succiniciproducens MBEL55E] gi|52306408|gb|AAU36908.1| TrmU protein [Mannheimia succiniciproducens MBEL55E] Length = 400 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 130/387 (33%), Positives = 212/387 (54%), Gaps = 29/387 (7%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +L++ L +N K +V+V MSGGVDSSV A +L++ GY V G+ ++ + + C Sbjct: 29 KLSAEQLAENAKK-KVIVGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YC 84 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 A D+ DA+ V D + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 85 TAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFK 144 Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L + LGAD +ATGHY+R R GDD R + R +D +DQSYFL+ + +Q+ Sbjct: 145 AFLEYAAEDLGADYIATGHYVRRR---GDDENAR--LLRGLDSNKDQSYFLYTLSHKQVG 199 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 FP+GD++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 200 QSLFPVGDIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARFLP--AQPGEIR 257 Query: 247 HLNGQILGRHNGIINYTIGQR----RGLGVAMGE-PLFVVYLDKNSSRVIVGP---RESL 298 ++G+++GRH+G++ YT+GQR G M E P +V D ++ +IV +L Sbjct: 258 TVDGKVIGRHDGLMYYTLGQRKGLGIGGIKGMDENPFYVAEKDLVNNVLIVAQGHDNSAL 317 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + R+++W+ + + +C VK R Q +P +Q +D+ + V F++ ++ Sbjct: 318 LSSGLIARQLHWVD----RQPIRENLRCTVKTRYRQTDIPCEIQPIDDETIRVIFDEPQI 373 Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGG+I Sbjct: 374 AVTPGQSAVFYQGEV----CLGGGVIE 396 >gi|322386456|ref|ZP_08060085.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus cristatus ATCC 51100] gi|321269542|gb|EFX52473.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus cristatus ATCC 51100] Length = 373 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 135/386 (34%), Positives = 196/386 (50%), Gaps = 39/386 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYAQ----VKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS ICF+ + + + + + A G ++ ++G+ +G+H G++ Sbjct: 181 AVAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTMDGRDMGQHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYLREI 308 YTIGQR GLG+ EP FVV D + + + VG SL+ +++ Sbjct: 239 YTIGQRGGLGIGGQQGGDNEPWFVVGKDLSQNILYVGQGFYHDHLMSTSLDASQVH---- 294 Query: 309 NWLGDGLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 F + + F +C K R Q V V D V+F++ + V GQA V Sbjct: 295 -------FTKEMPEEFTMECTAKFRYRQPDSKVTVTVKGDKAIVNFDQPQRAVTPGQAVV 347 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAV 392 FY + LGGG+I + ++ V Sbjct: 348 FYDGE----ECLGGGLIDRAYKNGQV 369 >gi|212692213|ref|ZP_03300341.1| hypothetical protein BACDOR_01709 [Bacteroides dorei DSM 17855] gi|212665090|gb|EEB25662.1| hypothetical protein BACDOR_01709 [Bacteroides dorei DSM 17855] Length = 351 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 120/363 (33%), Positives = 182/363 (50%), Gaps = 22/363 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++ MSGG DSSV A LL+ GY+V G+T + Y KG+ + + DAR +C+ Sbjct: 9 KVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFYE-------KGN--DTEYLEDARTLCE 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H +D FR +I F + Y AG TP+PC CN +K+ L ++ ++G Sbjct: 60 RLGIPHLTYDVRGTFRKTIIDYFINEYMAGHTPVPCTLCNNYLKWPLLKRISDEMGIYHF 119 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R RL G + D ++DQS+FL+ Q+ L + P+G++ K VR Sbjct: 120 ATGHYVRRRLING-----YYHITTGADPDKDQSFFLWGLPQEILQRMLLPMGNLTKARVR 174 Query: 202 DLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 ++A E G L A K DS +CF + K + G L G G + RH G Sbjct: 175 EIAAERGFLKAAHKRDSLGVCFCPMDYRTFLHKELPEGSILPGKFFDEMGNFIARHKGYP 234 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQRRGL + + +FV + ++VI+ ++LE + L+E L + Sbjct: 235 FYTIGQRRGLDIDLNRAVFVKEIIPAENKVILSDLKALEKTEMRLKEWRITNPALLLNK- 293 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 D ++ R + V +Q D+ ++V + +A GQA FY D VLGG Sbjct: 294 -DDIIVKIRYRKQANRCTVTLQ-PDNTLHVQLHEPLTAIAPGQAAAFYRDDV----VLGG 347 Query: 381 GII 383 GII Sbjct: 348 GII 350 >gi|21231412|ref|NP_637329.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768534|ref|YP_243296.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv. campestris str. 8004] gi|188991657|ref|YP_001903667.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv. campestris str. B100] gi|24638306|sp|Q8P9A1|MNMA_XANCP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|81305494|sp|Q4UUJ7|MNMA_XANC8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205829008|sp|B0RT32|MNMA_XANCB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|21113079|gb|AAM41253.1| tRNA methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573866|gb|AAY49276.1| tRNA methyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|167733417|emb|CAP51618.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase methyltransferase [Xanthomonas campestris pv. campestris] Length = 378 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 128/374 (34%), Positives = 187/374 (50%), Gaps = 28/374 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R +V +SGGVDSSV A L +DG + G+ +Q + A G C A D DA VC Sbjct: 5 RTIVGVSGGVDSSVAAWKLAQDGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + + V F + YAAG TP P V CNR VKF L + LGA+ + Sbjct: 61 VLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLEAAQALGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R V G R R++ R D +DQSYFL Q QL FP+G+++K ++R Sbjct: 121 ATGHYAR----VAHLGGRWRLL-RGADRNKDQSYFLHQLGQSQLAATLFPIGELEKSALR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A++ GL K DS ICF+ + + + + R A G+I GQ + H G+ Sbjct: 176 RIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RESLEVHRIYLR--EINWLGD 313 +T+GQR GL + P +VV D S+ + V R+S + +L+ + +W+ Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVGSNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 F C + R Q P V DDG + V+FE+ + V GQ+ V Y D Sbjct: 294 A----PPARSFSCTAQTRYRQPDEPCTVTVQDDGTLQVNFERPQRAVTPGQSLVLY--DG 347 Query: 373 NEARVLGGGIISGS 386 E LGG +I+ + Sbjct: 348 EE--CLGGAVIAAT 359 >gi|319775956|ref|YP_004138444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae F3047] gi|317450547|emb|CBY86764.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae F3047] Length = 418 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 124/375 (33%), Positives = 204/375 (54%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+ MSGGVDSSV A +L++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 61 KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 117 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 118 KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 177 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R GDD + + R +D +DQSYFL+ + +Q+ FP+G ++K V Sbjct: 178 IATGHYVRR---AGDDENAK--LLRGLDANKDQSYFLYTLSHKQVGQSLFPVGKIEKPIV 232 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ D + R A G+I ++ +I+GRH+G++ Sbjct: 233 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDNEIIGRHDGLM 290 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ A E +VV D ++ +IV PR L + +++W Sbjct: 291 YHTLGQRKGLGIGGLKNAGDEAWYVVDKDVKNNELIVAQGHDHPR--LFSKGLIASQLHW 348 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + + + +C VK R Q + ++ +D+ + V F++ + V GQ+ VFY Sbjct: 349 VD----RQPIRELLRCTVKTRYRQQDISCAIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 404 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII+ Sbjct: 405 GEV----CLGGGIIA 415 >gi|319935498|ref|ZP_08009933.1| tRNA-specific 2-thiouridylase mnmA [Coprobacillus sp. 29_1] gi|319809529|gb|EFW05946.1| tRNA-specific 2-thiouridylase mnmA [Coprobacillus sp. 29_1] Length = 379 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 130/376 (34%), Positives = 193/376 (51%), Gaps = 27/376 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 +VV+ +SGGVDS+V A LLK GY+VI V ++ ++S + G+ C +D Sbjct: 6 KVVLGLSGGVDSAVAAYLLKEQGYEVICVFMRNWDSSLNNDILGNPTNNNEICPQEEDYN 65 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA++V + + + D+ + + + V F YA G TP P + CN+ +KF L + Sbjct: 66 DAKKVAEHLGLELRRVDFIKEYWDHVFTYFLEEYAKGRTPNPDILCNKHIKFKAFLDYAK 125 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 + AD +ATGHY R ++G D +M R +D +DQ+YFL Q QL FP+G+ Sbjct: 126 SIDADYIATGHYARVEHHLGQDS----LMLRGVDNNKDQTYFLCQLNQLQLQSSLFPIGE 181 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQIL 253 + K VR LA ++ L +A K DS ICF+ + + + +K N A G +V + QI+ Sbjct: 182 LTKPEVRKLAEDLNLPVAHKKDSTGICFIGERDFREFLK--NYIPAKNGHMVDIQTKQIV 239 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVV--YLDKNSSRVIVGPR-ESLEVHRIYLREIN 309 G H GI+ YTIGQR+GL + G+ FVV D+N V G + + L + ++N Sbjct: 240 GEHQGIMYYTIGQRKGLNIGGPGDAWFVVGKEYDQNILYVCQGDQNDWLMSEGALITDVN 299 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368 W+ E F C K R Q V + D+ +YV F++ V GQA VFY Sbjct: 300 WIMSQKPESE----FSCTAKFRYRQKDNDVSIHFIDETTIYVTFKQPIKAVTPGQAAVFY 355 Query: 369 TSDSNEARVLGGGIIS 384 D LGGG I Sbjct: 356 NDDV----CLGGGTIE 367 >gi|125719134|ref|YP_001036267.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus sanguinis SK36] gi|166235087|sp|A3CRB2|MNMA_STRSV RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|125499051|gb|ABN45717.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Streptococcus sanguinis SK36] Length = 373 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 134/380 (35%), Positives = 198/380 (52%), Gaps = 25/380 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V Sbjct: 7 IRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDVAAVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 64 DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K V Sbjct: 124 VATGHYAQ----VKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A GL A K DS ICF+ + + + + + A G ++ L G+ +G+H G++ Sbjct: 180 RAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQHAGLM 237 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YTIGQR GLG+ EP FVV D + + + VG ++L + ++++ Sbjct: 238 YYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHFTK 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + + E+ ++ C K R Q V V D V+F+K + + GQ VFY D Sbjct: 298 E-MPEEFTME---CTAKFRYRQPDSKVTVTVKGDKAVVNFDKPQRAITPGQGVVFYDGD- 352 Query: 373 NEARVLGGGIISGSKRSDAV 392 LGGG+I + ++ V Sbjct: 353 ---ECLGGGLIDRAYKNGQV 369 >gi|85860139|ref|YP_462341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Syntrophus aciditrophicus SB] gi|123517192|sp|Q2LVR6|MNMA2_SYNAS RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|85723230|gb|ABC78173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Syntrophus aciditrophicus SB] Length = 342 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 113/335 (33%), Positives = 174/335 (51%), Gaps = 30/335 (8%) Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 +G AR + + +V D E F ++ Y TP PCV CNR +KF Sbjct: 11 SGSSEARARHAAHQLGIPLHVADVTETFDEEIVQYLTREYLVARTPNPCVVCNRKIKFKT 70 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL +L +ATGHY R + R + R +D +DQSYFLF Q+QL + Sbjct: 71 LLYYADRLACHFVATGHYAR---VFHNRQTGRYALLRGLDQAKDQSYFLFLLGQEQLSRI 127 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR-INAGIALEGDIVH 247 FPLG++ K+ VR +A MG++ + +SQ+ICF+ Y ++R + + A+ GDIV Sbjct: 128 LFPLGELTKKEVRSVALTMGVEAVREKESQEICFIPDDDYKTFIERHMGSSPAIPGDIVD 187 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 +G++LG HNGI ++TIGQR+GL +A P +V+ +D+ +RV+VG E + + Sbjct: 188 RSGRLLGSHNGIHSFTIGQRKGLHIAAPRPYYVLAIDREKNRVVVGHEEEQGFSGLIVSG 247 Query: 308 INWLGDGLFEDAVVDGFKCFVKIR-------------SSQDPV------PVFVQRNDDGV 348 ++W+ DG E + F+ V+IR S+ D + P + D + Sbjct: 248 VSWI-DG--ESPREEVFETLVRIRYRHRGVSSVVCPLSAGDEICPATGRPADHEEAGDKL 304 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 + F++ + VA GQA VFY+ D RV+GGG I Sbjct: 305 IIRFQEPQRAVAPGQAAVFYSDD----RVIGGGWI 335 >gi|240014473|ref|ZP_04721386.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae DGI18] gi|240120995|ref|ZP_04733957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae PID24-1] gi|268599754|ref|ZP_06133921.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae MS11] gi|268583885|gb|EEZ48561.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae MS11] Length = 383 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 127/382 (33%), Positives = 190/382 (49%), Gaps = 24/382 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + + C Q Sbjct: 15 LRMNTTSNTSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWENDDNDE---YCSIKQ 71 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 72 DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 131 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 132 YAVEQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 186 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 187 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 244 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308 +G H G++ YT+GQR+GLG+ GEP FV L KN V+ G L +Y R + Sbjct: 245 TIGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 300 Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 N L L E + C + R + P + +D+ + F++ + V GQ+ V Sbjct: 301 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCEL-CYLDDETAELVFDEPQWAVTPGQSAV 359 Query: 367 FYTSDSNEARVLGGGIISGSKR 388 Y D LGGGII + + Sbjct: 360 LYDVDI----CLGGGIIQTTDK 377 >gi|169350064|ref|ZP_02867002.1| hypothetical protein CLOSPI_00804 [Clostridium spiroforme DSM 1552] gi|169293277|gb|EDS75410.1| hypothetical protein CLOSPI_00804 [Clostridium spiroforme DSM 1552] Length = 387 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 137/397 (34%), Positives = 205/397 (51%), Gaps = 37/397 (9%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 + SE TR++ RVV+ +SGGVDS+V A LLK+ GY+VIGV ++ ++S+ Sbjct: 3 LYASEVTRMSK----------RVVLGLSGGVDSAVAAYLLKKQGYEVIGVFMRNWDSQLN 52 Query: 61 SKRKGS-------CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET 113 + G+ C QD DA+ V + + D+ + + + V F Y G T Sbjct: 53 NDILGNPTNDNDICPQEQDYNDAKAVAKCLGIEIKRVDFIKEYWDNVFTYFLDEYRKGRT 112 Query: 114 PLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQ 173 P P + CN+ +KF L+ + L AD +ATGHY R V + IM + +D +DQ Sbjct: 113 PNPDILCNKHIKFKAFLNYAKTLNADYIATGHYAR----VVHSENKDSIMLKGIDNNKDQ 168 Query: 174 SYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK 233 +YFL QQQL + FPLG++ K+ VR LA E+ L +ADK DS ICF+ + + + ++ Sbjct: 169 TYFLCQLNQQQLQNSLFPLGEIDKKEVRRLAHELQLPVADKKDSTGICFIGERDFKEFLQ 228 Query: 234 RINAGIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVY---LDKNSSR 289 N A G +V + G I+G H+GI+ YTIGQR+GLG+ + V DKN Sbjct: 229 --NYIPAQSGKMVDIETGDIIGEHSGIMYYTIGQRKGLGIGGPGGAWFVVGKDYDKNVLY 286 Query: 290 VIVG-PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDG 347 V G ++ L + ++NW+ + + C K R Q P+ ++ ++D Sbjct: 287 VCQGDQKDWLYSSGALISDVNWIA----SNKPTEKISCNAKFRYRQADNPIKLEFIDEDK 342 Query: 348 VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 VY+ F+K V GQA VFY D LGGG I Sbjct: 343 VYLTFDKPVKAVTPGQAAVFYDGDI----CLGGGTIE 375 >gi|160883140|ref|ZP_02064143.1| hypothetical protein BACOVA_01109 [Bacteroides ovatus ATCC 8483] gi|299148187|ref|ZP_07041249.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 3_1_23] gi|156111365|gb|EDO13110.1| hypothetical protein BACOVA_01109 [Bacteroides ovatus ATCC 8483] gi|298512948|gb|EFI36835.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 3_1_23] Length = 361 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 124/387 (32%), Positives = 191/387 (49%), Gaps = 59/387 (15%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV+V MSGG+DS+ +L+ GY+++GVT++++ G + DAR Sbjct: 4 RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + HYV D F+ ++ F Y G TP PCV CN KF L +L Sbjct: 50 LAERMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109 Query: 139 DVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 +ATGHY R +Y+ GDD K +DQSYFL+ Q L FP Sbjct: 110 AWVATGHYSRLEEKSGNIYIVAGDDDK------------KDQSYFLWRLGQDVLKRCIFP 157 Query: 192 LGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVH 247 LGD K VR+ E G + K +S ++CF+ +G Y D ++ + E G V+ Sbjct: 158 LGDYTKVKVREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDSEIGPGWFVN 216 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 G LG+H G YTIGQR+GL +A+G+P +V+ ++ + V++G + LE + Sbjct: 217 SEGVKLGKHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGNADQLETEYMLAE- 275 Query: 308 INWLGDGLFEDAVVDGFKCF------VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360 +D +VD + F V+IR P+P V+R +DG + + F + +A Sbjct: 276 ---------QDKMVDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLIRFLEIASAIA 326 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSK 387 GQ+ VFY RVLGG I+ + Sbjct: 327 PGQSAVFYDG----KRVLGGAFIASQR 349 >gi|268680794|ref|YP_003305225.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Sulfurospirillum deleyianum DSM 6946] gi|268618825|gb|ACZ13190.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Sulfurospirillum deleyianum DSM 6946] Length = 339 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 120/369 (32%), Positives = 194/369 (52%), Gaps = 36/369 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ + MSGG+DSS A LLK +G++V+G+ L+L++ K G ++ + +V Sbjct: 1 MKIALLMSGGIDSSYCAYLLKEEGHEVVGIYLKLHDDDKKH--------GVNIANIEKVS 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + ++ D + F+ + F SY G TP PC CN +KF + G + Sbjct: 53 QHLGIKTHIIDAKALFKEQIYDYFVRSYEQGLTPNPCAFCNPKMKFGFAFEKALEFGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + +G + D +DQSYFLF ++ + + FPLG+MKKE + Sbjct: 113 IATGHYARVK-----EGH----IQEAKDKSKDQSYFLFGLKREVIEKIIFPLGEMKKEEI 163 Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 + +A E +G + DSQ+ICFV Y D++++ + + +G I +G+++G H Sbjct: 164 KPIALEKLPWLG-SLESYKDSQEICFVTD-TYIDILQK-HLNVDQKGLIKDTSGKVIGEH 220 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G ++YTIG+R+GL + +P FVV +D ++ VI G +E L R+ + + L Sbjct: 221 KGYMHYTIGKRKGLTINGAHDPHFVVGIDAKTNTVIAGKKEELLQKRVVAQNFS-----L 275 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 ED + V+ RS Q V V+ D + + E+ G+ASGQA V Y +D Sbjct: 276 AEDFKEGTYGVKVRYRSPQ--VKAHVKIEGDKIITELEEGVYGLASGQALVVYQND---- 329 Query: 376 RVLGGGIIS 384 VLGGG I Sbjct: 330 LVLGGGWIE 338 >gi|205829105|sp|Q1JED4|MNMA_STRPD RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 373 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 136/371 (36%), Positives = 194/371 (52%), Gaps = 25/371 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V Sbjct: 7 IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 64 DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K V Sbjct: 124 VATGHYAQ----VKRDENGTVYMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H G++ Sbjct: 180 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLM 237 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YTIGQR GLG+ +P FVV D + + + VG E+L + + I++ Sbjct: 238 YYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTR 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + E F+C K R Q V V +D V F + + + GQA VFY D Sbjct: 298 EMPEEFT----FECTAKFRYRQPDSQVTVHVREDKAEVVFAEPQRAITPGQAVVFY--DG 351 Query: 373 NEARVLGGGII 383 E LGGG+I Sbjct: 352 KEC--LGGGMI 360 >gi|145589976|ref|YP_001156573.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|205816900|sp|A4SZU5|MNMA_POLSQ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|145048382|gb|ABP35009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 370 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 119/371 (32%), Positives = 183/371 (49%), Gaps = 25/371 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV+ MSGGVDSSV A +LK G++VIG+ ++ + + C A QD D V D Sbjct: 16 KVVIGMSGGVDSSVAAWMLKEQGFEVIGLFMKNWEDDDNDEY---CSARQDWLDVVSVAD 72 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +R V F YAAG TP P V CN +KF L LGAD + Sbjct: 73 MIGIDVEAVNFAAEYRERVFADFLCEYAAGRTPNPDVLCNAEIKFKAFLDHAMSLGADAI 132 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R +G R +++ + +D +DQSYFL TQQQL + FPLG++ K VR Sbjct: 133 ATGHYARVR----HEGGRVQLL-KAVDASKDQSYFLHRLTQQQLSKVMFPLGEIPKTEVR 187 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A ++GL A K DS ICF+ + + + + R + G I G+ +G H G+ Sbjct: 188 KIAEQIGLHNAKKKDSTGICFIGERPFREFLNRYLPRVP--GPIKTPEGKTVGEHMGLAF 245 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313 +T+GQR+G+G+ G+ +V D ++ + V L +++ + +W+ Sbjct: 246 FTLGQRKGIGLGGSQDGNGDAWYVARKDMANNTLYVAQGHEHPWLLANKLSAVDASWVSG 305 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 E + + R + + + + F +++ V GQ+ V Y D Sbjct: 306 AAPEPG---SYSAKTRYRQTDSACTYIADIDTNNFSLSFPEAQWAVTPGQSAVLYDGDI- 361 Query: 374 EARVLGGGIIS 384 LGGGIIS Sbjct: 362 ---CLGGGIIS 369 >gi|319898139|ref|YP_004136336.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae F3031] gi|317433645|emb|CBY82030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae F3031] Length = 383 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 122/375 (32%), Positives = 206/375 (54%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+ MSGGVDSSV A +L++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 26 KVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVCD 82 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 83 KLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGADY 142 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 143 IATGHYVRR---TGDNENAK--LLRGLDPNKDQSYFLYTLSHKQVGQSLFPVGEIEKPIV 197 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + K+ D + R A G+I ++ +I+GRH+G++ Sbjct: 198 RAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDDEIIGRHDGLM 255 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GL + A + +VV D ++ +IV PR L + +++W Sbjct: 256 YHTLGQRKGLDIGGLKNAGDKAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQLHW 313 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + + + + +C VK R Q +P ++ +D+ + V F++ + V GQ+ VFY Sbjct: 314 VD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYL 369 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII+ Sbjct: 370 GEV----CLGGGIIA 380 >gi|327463811|gb|EGF10127.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis SK1057] Length = 373 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 134/370 (36%), Positives = 194/370 (52%), Gaps = 25/370 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYAQ----VKRDKDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLEKTEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS ICF+ + + + + + A G ++ L G+ +G+H G++ Sbjct: 181 AIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLP--AQPGRMMTLEGRDMGQHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ EP FVV D + + + VG ++L + ++++ + Sbjct: 239 YTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHFTKE 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ C K R Q V V D V+F++ + V GQA VFY D Sbjct: 299 -MPEEFTME---CTAKFRYRQPDSKVTVTVKGDKAVVNFDQPQRAVTPGQAVVFYDGD-- 352 Query: 374 EARVLGGGII 383 LGGG+I Sbjct: 353 --ECLGGGLI 360 >gi|324991889|gb|EGC23812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis SK405] gi|324996221|gb|EGC28131.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis SK678] gi|327458514|gb|EGF04864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis SK1] gi|327471584|gb|EGF17027.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis SK408] gi|327490314|gb|EGF22101.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis SK1058] Length = 373 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 134/379 (35%), Positives = 198/379 (52%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYAQ----VKRDKDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS ICF+ + + + + + A G ++ + G+ +G+H G++ Sbjct: 181 AIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTMEGRDMGQHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ EP FVV D + + + VG ++L + ++++ + Sbjct: 239 YTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHFTKE 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ C K R Q V V D V+F++ + V GQA VFY D Sbjct: 299 -MPEEFTME---CTAKFRYRQPDSKVTVTVKGDKAVVNFDQPQRAVTPGQAVVFYDGD-- 352 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I + ++ V Sbjct: 353 --ECLGGGLIDRAYKNGQV 369 >gi|148996542|ref|ZP_01824260.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP11-BS70] gi|307066804|ref|YP_003875770.1| putative tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Streptococcus pneumoniae AP200] gi|147757117|gb|EDK64156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP11-BS70] gi|306408341|gb|ADM83768.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Streptococcus pneumoniae AP200] Length = 373 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 139/379 (36%), Positives = 195/379 (51%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA E GL A K DS ICF+ + + + + N A G ++ ++G+ +G H G++ Sbjct: 181 RLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVV--YLDKNSSRVIVG-PRESLEVHRIYLREINWLGD 313 YTIGQR GLG+ P FVV L KN V G +SL + ++++ D Sbjct: 239 YTIGQRGGLGIGGQHGGDNAPWFVVGKALSKNILYVGQGFYHDSLMSTSLEASQVHFTRD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ C K R Q V V + V F + + + GQA VFY + Sbjct: 299 -MPEEFTLE---CTAKFRYRQPDSKVTVHVKGEKAEVIFAEPQRAITPGQAVVFYDGE-- 352 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I + R V Sbjct: 353 --ECLGGGLIDNAYRDGQV 369 >gi|166712080|ref|ZP_02243287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 378 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 130/374 (34%), Positives = 187/374 (50%), Gaps = 28/374 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+VV +SGGVDSSV A L + G + G+ +Q + A G C A D DA VC Sbjct: 5 RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + ++ + D+ + + V F + YAAG TP P V CNR VKF L + LGA+ + Sbjct: 61 VLGIAFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V G R R++ R D +DQSYFL Q QL FP+GD++K ++R Sbjct: 121 ATGHYAQ----VAHRGGRWRLL-RGADRGKDQSYFLHQLGQSQLAATLFPIGDLEKSTLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +AR+ GL K DS ICF+ + + + + R A G+I GQ + H G+ Sbjct: 176 RIARDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RESLEVHRIYLR--EINWLGD 313 +T+GQR GL + P +VV D S+ + V R+S + +L+ + +W+ Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 F C + R Q P V DDG V V FE+ + V GQ+ V Y D Sbjct: 294 A----PPARRFSCTAQTRYRQPDEPCTVDVQDDGSVQVHFERPQRAVTPGQSLVLY--DG 347 Query: 373 NEARVLGGGIISGS 386 E LGG +I+ + Sbjct: 348 KE--CLGGAVIAAT 359 >gi|325527989|gb|EGD05219.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia sp. TJI49] Length = 387 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 128/380 (33%), Positives = 181/380 (47%), Gaps = 40/380 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L L A+++ Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDAEMI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + D + R G + +G+++G H G+ Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TRPGPMKTPDGKVVGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGD 313 YT GQR+G+G+ GEP FV D N+ V+ G + R + ++W+ Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIPSNTLYVVQGHDHPWLLSRQLVAGNVSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQ----------DPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 + DGF C K R Q P P R + F+ ++ V GQ Sbjct: 295 ----EPPADGFACGAKTRYRQADAACAYGTATPGPAGEAR----FSLAFDDAQWAVTPGQ 346 Query: 364 ACVFYTSDSNEARVLGGGII 383 + V Y + LGGGII Sbjct: 347 SAVLYDGEI----CLGGGII 362 >gi|288941240|ref|YP_003443480.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Allochromatium vinosum DSM 180] gi|288896612|gb|ADC62448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Allochromatium vinosum DSM 180] Length = 371 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 129/379 (34%), Positives = 192/379 (50%), Gaps = 30/379 (7%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 + P RV+V +SGGVDS++ A L GY V + ++ + A +G C A +D+ D Sbjct: 6 QTPSAQRVIVGLSGGVDSAIAAHRLLEQGYAVEALFMKNWEEDDA---EGYCAAAEDLAD 62 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 AR V + + + + ++ + + V F Y A TP P V CNR +KF+ L Sbjct: 63 ARAVAERLGIRLHTVNFSAEYWDRVFEYFLREYQALRTPNPDVLCNREIKFAAFLDHALG 122 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGA+ +ATGHY R V D + + R +D ++DQ+YFL Q+QL FPL D+ Sbjct: 123 LGAEAIATGHYAR----VVADAQGGYHLHRAVDADKDQTYFLHLLDQEQLSRALFPLADL 178 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILG 254 K VR LAR +GL A K DS ICF+ + ++ D + R + E G I G LG Sbjct: 179 TKGEVRALARRLGLANAAKKDSTGICFIGERRFSDFLARY---LPREPGPIETPEGVRLG 235 Query: 255 RHNGIINYTIGQRRGL---GVAMGE--PLFVVYLDKNSSRVIV--GPRESLEVHR-IYLR 306 H+G+ YT+GQR+GL GV+ G P +V D ++R+IV R L + + Sbjct: 236 EHHGLAYYTLGQRQGLGIGGVSQGREAPWYVAVKDSANNRLIVVQDSRHPLLMSTGLEAL 295 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV--FVQRNDDGVYVDFEKSEVGVASGQA 364 + +W+ E F+C ++R Q P+ V+ DG V F++ + V GQ+ Sbjct: 296 QPHWISGRAPETP----FRCLARLRHRQ-PLQACELVEIGADGCRVRFDEPQRAVTPGQS 350 Query: 365 CVFYTSDSNEARVLGGGII 383 VFY E LGG +I Sbjct: 351 VVFY----QETECLGGAVI 365 >gi|322515062|ref|ZP_08068070.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus ureae ATCC 25976] gi|322118942|gb|EFX91119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus ureae ATCC 25976] Length = 389 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 125/387 (32%), Positives = 212/387 (54%), Gaps = 29/387 (7%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +L + L +N K +V++ MSGGVDSSV A +L++ GY V G+ ++ + + C Sbjct: 18 KLTAEQLAENAKK-KVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 73 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 A D+ DA+ V D + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 74 TAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKEIKFK 133 Query: 128 DLLS-VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L + LGAD +ATGHY+R GDD +++C +D +DQSYFL+ + +Q+ Sbjct: 134 AFLEYAAKDLGADYIATGHYVRRS---GDD-NNAQLLC-GLDANKDQSYFLYTLSHKQVG 188 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 FP+GD+ K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 189 QSLFPVGDIGKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQPGEIR 246 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298 ++G+++GRH+G++ +T+GQR+GLG+ +P +VV D ++ ++V +L Sbjct: 247 TVDGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHDNSAL 306 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEV 357 + +++W+ + + +C VK R Q + +Q +DD + V F++ ++ Sbjct: 307 LSSGLIATQLHWVD----RQPIRENVRCTVKTRYRQTDIACEIQPMDDDTIRVIFDEPQI 362 Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGG+I Sbjct: 363 AVTPGQSAVFYQGEV----CLGGGVIE 385 >gi|226940740|ref|YP_002795814.1| tRNA-specific 2-thiouridylase MnmA [Laribacter hongkongensis HLHK9] gi|226715667|gb|ACO74805.1| TrmU [Laribacter hongkongensis HLHK9] Length = 359 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 129/373 (34%), Positives = 183/373 (49%), Gaps = 26/373 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K R+VV +SGGVDSSV A LLK+ G++VIGV +Q + S+ C QD DA Sbjct: 4 KKKRIVVGLSGGVDSSVTAYLLKQQGHEVIGVFMQNWEDDNDSE---YCSIKQDSLDAMS 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + + ++ ++ V F Y+AG TP P V CN +KF L QLGA Sbjct: 61 VADLLGIDMEIVNFAREYKERVFQYFLDEYSAGRTPNPDVLCNAEIKFKAFLDYAMQLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R + DG R + + +D +DQSYFL+ QL FPLGD+ K Sbjct: 121 DCIATGHYARK---LERDG--RHYLLKGVDPGKDQSYFLYRLVPAQLEKALFPLGDLHKT 175 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E+GL A K DS ICF+ + + ++R G +V G+++G+H G Sbjct: 176 EVRRIAGEIGLPNARKKDSTGICFIGERPFRAFLQRYLP--MHPGAMVTPEGRVVGQHEG 233 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRESLEVHRIYLRE-INW 310 ++ YT+GQR+GL + GEP FV D +N V+ G L + + E ++W Sbjct: 234 LMYYTLGQRKGLNIGGSKDGNGEPWFVAGKDIPRNELIVVQGHDHPLLLKPVLEAEQLSW 293 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 A DG D + + + F S+ V GQ+ V Y Sbjct: 294 ----TLGAAPDDGAYAAKNRYRMPDAACELTNLSSGRIRLAFADSQWSVTPGQSAVLYDG 349 Query: 371 DSNEARVLGGGII 383 D LGGG+I Sbjct: 350 DV----CLGGGVI 358 >gi|325686453|gb|EGD28482.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis SK72] Length = 373 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 134/379 (35%), Positives = 198/379 (52%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYAQ----VKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS ICF+ + + + + + A G ++ L G+ +G+H G++ Sbjct: 181 AIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLP--AQPGRMMTLEGRDMGQHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ EP FVV D + + + VG ++L + ++++ + Sbjct: 239 YTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHFTKE 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ C K R Q V V D V+F++ + + GQA VFY D Sbjct: 299 -MPEEFTME---CTAKFRYRQPDSKVTVTVKGDKAVVNFDQPQRAITPGQAVVFYDGD-- 352 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I + ++ V Sbjct: 353 --ECLGGGLIDRAYKNGQV 369 >gi|94991468|ref|YP_599568.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes MGAS10270] gi|94544976|gb|ABF35024.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pyogenes MGAS10270] Length = 379 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 136/371 (36%), Positives = 194/371 (52%), Gaps = 25/371 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V Sbjct: 13 IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 69 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 70 DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 129 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K V Sbjct: 130 VATGHYAQ----VKRDENGTVYMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEV 185 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H G++ Sbjct: 186 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLM 243 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YTIGQR GLG+ +P FVV D + + + VG E+L + + I++ Sbjct: 244 YYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTR 303 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + E F+C K R Q V V +D V F + + + GQA VFY D Sbjct: 304 EMPEEFT----FECTAKFRYRQPDSQVTVHVREDKAEVVFAEPQRAITPGQAVVFY--DG 357 Query: 373 NEARVLGGGII 383 E LGGG+I Sbjct: 358 KEC--LGGGMI 366 >gi|323350805|ref|ZP_08086464.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis VMC66] gi|322122979|gb|EFX94682.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis VMC66] Length = 373 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 135/380 (35%), Positives = 198/380 (52%), Gaps = 25/380 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V Sbjct: 7 IRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDVAAVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + N V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 64 DQIGIPYYSVNFEKEYWNRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY +++ DG M R D +DQ+YFL +Q+QL FPLG ++K V Sbjct: 124 VATGHY--AQIKRDQDGLVH--MLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A GL A K DS ICF+ + + + + + A G ++ L G+ +G+H G++ Sbjct: 180 RAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQHAGLM 237 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YTIGQR GLG+ EP FVV D + + + VG ++L + ++++ Sbjct: 238 YYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHFTK 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + + E+ ++ C K R Q V V D V F + + + GQA VFY + Sbjct: 298 E-MPEEFTME---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE- 352 Query: 373 NEARVLGGGIISGSKRSDAV 392 LGGG+I + R V Sbjct: 353 ---ECLGGGLIDNAYRDGKV 369 >gi|225871462|ref|YP_002747409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus equi subsp. equi 4047] gi|254811462|sp|C0MB53|MNMA_STRE4 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|225700866|emb|CAW95613.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus equi subsp. equi 4047] Length = 374 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 137/372 (36%), Positives = 191/372 (51%), Gaps = 29/372 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V D Sbjct: 9 RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 65 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y +G TP P V CN+ +KF L LGAD + Sbjct: 66 QIGIPYYSVNFEKEYWDRVFEYFLAEYRSGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 125 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + + D M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 126 ATGHYAQ----IKRDENGVVHMLRGLDKGKDQTYFLSQLSQEQLQKTMFPLGHLQKSEVR 181 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + GL A K DS ICF+ + + + A +G ++ ++G+ +G H G++ Sbjct: 182 AIAEQAGLATAKKKDSTGICFISEKNFKTFLSHYLP--AQKGRMMTVDGRDMGEHAGLMY 239 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ +P FVV D + + + VG ESL + I Sbjct: 240 YTIGQRGGLGIGGQQGGDNKPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASVIQ---- 295 Query: 314 GLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 F V + F +C K R Q V V D V F + + + GQA VFY D Sbjct: 296 --FTREVPEEFTLECTAKFRYRQPDSKVTVHVKKDKAKVVFAEPQRAITPGQAVVFY--D 351 Query: 372 SNEARVLGGGII 383 +E LGGGII Sbjct: 352 GHEC--LGGGII 361 >gi|298384831|ref|ZP_06994390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 1_1_14] gi|298261975|gb|EFI04840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 1_1_14] Length = 362 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 126/387 (32%), Positives = 191/387 (49%), Gaps = 59/387 (15%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV+V MSGG+DS+ +L+ GY+++GVT++++ G + DAR Sbjct: 4 RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + HYV D F+ ++ F Y G TP PCV CN KF L +L Sbjct: 50 LAARMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLAEWADKLDC 109 Query: 139 DVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 +ATGHY R +Y+ GDD K +DQSYFL+ Q L FP Sbjct: 110 AYIATGHYSRLEERNGHIYIVAGDDDK------------KDQSYFLWRLGQDILKRCIFP 157 Query: 192 LGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVH 247 LGD K VR+ E G + K +S ++CF+ +G Y D ++ + E G V+ Sbjct: 158 LGDYTKIKVREYLAEKGYEAKSKEGESMEVCFI-RGDYRDFLREQCPELDTEIGPGWFVN 216 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 G LG+H G YTIGQR+GL +A+G+P +V+ ++ + V++G E L+ + Sbjct: 217 SEGVKLGQHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLQTEYMLAE- 275 Query: 308 INWLGDGLFEDAVVDGFKCF------VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360 +D +VD + F V+IR P+P V+R +DG + V F ++ VA Sbjct: 276 ---------QDRIVDEQELFSCENLAVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAVA 326 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSK 387 GQ+ VFY RVLGG I+ + Sbjct: 327 PGQSAVFYDG----RRVLGGAFIASQR 349 >gi|110005181|emb|CAK99508.1| probable trna 5-methylaminomethyl-2-thiouridylate-methyltransferase protein [Spiroplasma citri] Length = 377 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 128/379 (33%), Positives = 196/379 (51%), Gaps = 32/379 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 +VVV +SGGVDSSV LL++ GYDV G+ ++ ++S+ + G+ C D Sbjct: 3 KVVVGLSGGVDSSVSLYLLQQAGYDVEGLFMRNWDSQLNNDILGNKAINNMICPQELDYN 62 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VT 133 DA V T+ V + D+ + + V F S Y G TP P + CN+ +KF+ L+ Sbjct: 63 DAVNVSKTLQVPLHRADFIKEYWEYVFKHFISEYQKGRTPNPDILCNKYIKFNYFLNYAI 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 AD +A GHY R R ++ + + R +D ++DQ+YFL Q QL FPLG Sbjct: 123 NNYHADFIAMGHYARVRF---NEELQEYQLLRGIDRDKDQTYFLSQLNQGQLSKTFFPLG 179 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252 ++ K+ VR++A L A+K DS ICF+ + + ++ N +G+IV + ++ Sbjct: 180 NLTKKEVREIAMTQNLSTANKKDSTGICFIGERDFKIFLQ--NYIPNQDGNIVDIETKEV 237 Query: 253 LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LR 306 +G HNG++ YTIGQRRGL + M EP FV KN + I+ +S E +Y + Sbjct: 238 VGHHNGVMYYTIGQRRGLNLGGMSEPYFVA--GKNVEKNILYVAKSSEEKWLYSTSCLVT 295 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQAC 365 ++NW+ F + F C K R Q +PV + ND+ V F + + GQA Sbjct: 296 DVNWINT--FREK---EFNCTAKFRYRQKDIPVKITVLNDNKCLVQFATTVKAITPGQAS 350 Query: 366 VFYTSDSNEARVLGGGIIS 384 VFY + LGGG+I+ Sbjct: 351 VFYVDEV----CLGGGVIN 365 >gi|152981022|ref|YP_001352063.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Janthinobacterium sp. Marseille] gi|205816857|sp|A6SUW6|MNMA_JANMA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|151281099|gb|ABR89509.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Janthinobacterium sp. Marseille] Length = 372 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 127/379 (33%), Positives = 185/379 (48%), Gaps = 29/379 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVV+ MSGGVDSSV A LLK GY+VIG+ ++ + S+ C QD DA V D Sbjct: 5 RVVIGMSGGVDSSVSAWLLKEQGYEVIGLFMKNWEDDDDSEY---CSTRQDWIDAASVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + V ++ +++ V F Y AG TP P V CN +KF L LGAD++ Sbjct: 62 VVGVDIEAVNFASEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMLLGADMI 121 Query: 142 ATGHYIRSR-LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY R R + G D R ++ + +D +DQSYFL Q QL FPLG+++K V Sbjct: 122 ATGHYARVREVTSGPDAGRVELL-KAVDASKDQSYFLHRLNQAQLAKTLFPLGEIRKTEV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + + + + R + G + G I+G H G+ Sbjct: 181 RKIAEQLKLPNATKKDSTGICFIGERPFREFLNRYLS--YQPGPMKTPEGVIVGEHVGLS 238 Query: 261 NYTIGQRRGLGV----------AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLRE 307 YT+GQR+G+G+ EP +V D N+ ++ G L + + Sbjct: 239 FYTLGQRKGIGLGGMKSHKNTDGNSEPWYVARKDVATNTLYIVQGHDHPWLLSSELSAGQ 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 ++W+ + +V K R Q V + + DG + F + V GQ+ V Sbjct: 299 MSWVAGSPPSEELVS-----AKTRYRQADVACSQRSDADGFSLAFAAPQWAVTPGQSAVL 353 Query: 368 YTSDSNEARVLGGGIISGS 386 Y D LGGGII+ S Sbjct: 354 YQGDV----CLGGGIINTS 368 >gi|240113689|ref|ZP_04728179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae MS11] Length = 367 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 126/371 (33%), Positives = 187/371 (50%), Gaps = 24/371 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++V +SGGVDSSV AALLK+ GY V GV +Q + + + C QD +DA V D Sbjct: 10 IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWENDDNDEY---CSIKQDSFDAIAVADI 66 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + + ++ ++++ V F Y+AG TP P V CN +KF L + GAD +A Sbjct: 67 VGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYAVEQGADTIA 126 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R + G + + +D +DQSYFL+ QL FPLG ++K VR Sbjct: 127 TGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLGGLEKPEVRR 181 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA E L A K DS ICF+ + + + +++ G +V G+ +G H G++ Y Sbjct: 182 LAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGKTIGEHVGLMFY 239 Query: 263 TIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI--NWLGDGLFE 317 T+GQR+GLG+ GEP FV L KN V+ G L +Y R + N L L E Sbjct: 240 TLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSLVMNDLSFTLPE 295 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + C + R + P + +D+ + F++ + V GQ+ V Y D Sbjct: 296 RPKAGRYTCKTRYRMADAPCEL-CYLDDETAELVFDEPQWAVTPGQSAVLYDVDI----C 350 Query: 378 LGGGIISGSKR 388 LGGGII + + Sbjct: 351 LGGGIIQTTDK 361 >gi|167912477|ref|ZP_02499568.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 112] Length = 356 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 125/372 (33%), Positives = 176/372 (47%), Gaps = 30/372 (8%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D I + Sbjct: 1 MSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVADLIGID 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 ++ +++ V F Y+AG TP P V CN +KF L LGA +ATGHY Sbjct: 58 VEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTIATGHY 117 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 R R G R + + D +DQSYFL Q QL FPLG++ K VR++A + Sbjct: 118 ARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVREIAAQ 172 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 +GL A K DS ICF+ + + D + R G + +G+ +G H G+ YT GQ Sbjct: 173 IGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAFYTFGQ 230 Query: 267 RRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGDGLFED 318 R+G+G+ GEP FV D N+ V+ G L + ++W+ + Sbjct: 231 RKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG----E 286 Query: 319 AVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 DG +C K R Q P Q D+ + F++ + V GQ+ V Y D Sbjct: 287 PPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWAVTPGQSAVLYDGDV-- 344 Query: 375 ARVLGGGIISGS 386 LGGGII + Sbjct: 345 --CLGGGIIESA 354 >gi|163857039|ref|YP_001631337.1| tRNA-specific 2-thiouridylase MnmA [Bordetella petrii DSM 12804] gi|205811276|sp|A9IQK6|MNMA_BORPD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|163260767|emb|CAP43069.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bordetella petrii] Length = 376 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 130/380 (34%), Positives = 188/380 (49%), Gaps = 29/380 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ + S+ C QD+ DA Sbjct: 12 KGRRVVVGMSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSE---YCSTRQDLLDAAS 68 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + V ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 69 VADLVGVDFEYVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMTLGA 128 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R R G G+ +++ + +D +DQSYFL Q QL FPLG++ K Sbjct: 129 EHIATGHYARVRAIAGAHGREYQLL-KALDGSKDQSYFLHRLNQAQLSRTLFPLGEIHKT 187 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHN 257 VR +A ++GL A K DS ICF+ + + + + R + E GDI+ GQ +GRH+ Sbjct: 188 EVRRIAHDIGLHNAAKKDSTGICFIGERPFREFLNRY---LPTEPGDILTPQGQRVGRHH 244 Query: 258 GIINYTIGQR------------RGLGVAMGEPLFVVYLDKNSSRVIVGP-RESLEVHRIY 304 G+ YT+GQR R G A + L N V+ G L +R+ Sbjct: 245 GLSFYTLGQRKGLGVGGVKGSQRDDGTADAWYVARKDLQHNILYVVQGHDHPWLLSNRLQ 304 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 + +W+ E + G+ + R + D V Q + + F + + V GQ+ Sbjct: 305 ALDASWVAGRAPE---LRGYGAKTRYRQA-DAACVLEQASQGAFELSFSQPQWAVTPGQS 360 Query: 365 CVFYTSDSNEARVLGGGIIS 384 V Y D LGGGII+ Sbjct: 361 AVLYDGDV----CLGGGIIA 376 >gi|261363616|ref|ZP_05976499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria mucosa ATCC 25996] gi|288568144|gb|EFC89704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria mucosa ATCC 25996] Length = 367 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 131/383 (34%), Positives = 194/383 (50%), Gaps = 26/383 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 +D+ + P + ++V +SGGVDSSV AALLK+ GY V GV +Q + + C Q Sbjct: 1 MDITQQPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDEY---CSIKQ 55 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D I + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 56 DSFDAIAVADIIGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLD 115 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 116 YAIEQGADTIATGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERAIFP 170 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LGD++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 171 LGDLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGK 228 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308 +G H G++ YT+GQR+GLG+ GEP FV L KN V+ G L +Y R + Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 284 Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 N L L E + C + R + P + +D+ V + F++ + V GQ+ V Sbjct: 285 VMNDLSFTLPERPKEGRYTCKTRYRMADAPCEL-RYLDDETVELVFDEPQWAVTPGQSAV 343 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 Y D LGGGII + + Sbjct: 344 LYDGDV----CLGGGIIMSTDKP 362 >gi|315657217|ref|ZP_07910101.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492320|gb|EFU81927.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 409 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 136/400 (34%), Positives = 195/400 (48%), Gaps = 39/400 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKGSCCAGQDVYDARRVC 80 +++V +SGGVDS+V A L+ G++V G +QL + SR S+ S + DA RV Sbjct: 8 KILVGLSGGVDSAVATARLQAAGHEVSGFFMQLESPSRPWSRPVTSAEPVDALADAHRVA 67 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + V V+D ERF V+ FA +Y G TP PCV CNR +KF ++ R+ G D Sbjct: 68 DFLGVELQVWDLAERFNRVVMDSFAQAYRDGLTPNPCVHCNRFIKFGYVIERARREGFDY 127 Query: 141 LATGHYIRSRLY---------------VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 +ATGHY +RL+ V + + R + +DQSY L + L Sbjct: 128 VATGHY--ARLWRPGQVGLIPVGVPPTVAEGAFPDFALLRGSAIGKDQSYVLAGARAEAL 185 Query: 186 CDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 FPLGD+ K + R A +G+ +A K DS DICF+ G + R G AL G Sbjct: 186 ARAVFPLGDVTDKAATRAEAEALGIPVAGKRDSFDICFIPDGDTRGFL-RGCIGAAL-GQ 243 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEV 300 IV +G ++G H+G YT+GQRRGL + G P +VV D ++ V V PR++L V Sbjct: 244 IVDEDGAVVGSHDGAFQYTVGQRRGLHIPRPHQDGAPRYVVGTDAETNTVFVAPRQALTV 303 Query: 301 HRIYL-REINWLGD------GLFEDAVVDGFKCFVKIRSSQDPV---PVFVQRNDDG--- 347 I +NWL D G + +D ++ R+ PV V ++ DG Sbjct: 304 TEIQAGPAVNWLTDPTRLGLGATGEGELDPVGLTIQFRAHGQPVTPRAVHLESGTDGTKL 363 Query: 348 -VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 V + GVA GQ+ V Y S RV+ I+ + Sbjct: 364 QVALPPTAGVTGVAPGQSLVLYQDSSQGDRVIAQATITAT 403 >gi|126661854|ref|ZP_01732853.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase [Flavobacteria bacterium BAL38] gi|126625233|gb|EAZ95922.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase [Flavobacteria bacterium BAL38] Length = 395 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 122/402 (30%), Positives = 197/402 (49%), Gaps = 48/402 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDSSV A LLK GY+VIG+ ++ ++ + C +D DA V + Sbjct: 3 RVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVT-ISNECPWLEDSNDALLVAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + D E+++ ++ + Y G TP P V CNR +KF + + LGAD + Sbjct: 62 KLGIPFQTVDLSEQYKEKIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMKIAMSLGADYV 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + + ++GK + D +DQSYFL +Q QL FP+G++ K VR Sbjct: 122 ATGHYCR-KGTIEENGKEVFQLLAGKDDNKDQSYFLCQLSQDQLAKALFPIGELTKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFV-------------------------------QQGKYFD 230 ++A ++ L A+K DSQ +CF+ Q+ +F+ Sbjct: 181 EIATKLDLITAEKKDSQGLCFIGKVRLPEFLQQKLQPKEGIIVEIPADATVFNQEKPHFN 240 Query: 231 VVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSR 289 + A A D + + G+++G+H G +T GQR+GL V EPLF++ D + Sbjct: 241 SNEEAFAFEAKRIDYLKVPGKVMGKHQGAHYFTKGQRKGLNVGGTKEPLFIIETDVEKNI 300 Query: 290 VIVG-----PRESLEVHRIYLREINWLGDGLFEDAVVDG--FKCFVKIRSSQDPVPVFVQ 342 + G P + I E++W+ + L ++ +G + +IR Q + Sbjct: 301 IYTGQGNNHPGLFKKALFIANNEVHWIREDL---SLKEGETLEVMARIRYRQPLQKATLH 357 Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + DG+YV FEK + + GQ ++ +D VLG G+I+ Sbjct: 358 QFKDGMYVVFEKPQSAITEGQFVAWHHND----EVLGSGVIA 395 >gi|315654863|ref|ZP_07907768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mobiluncus curtisii ATCC 51333] gi|315490824|gb|EFU80444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mobiluncus curtisii ATCC 51333] Length = 412 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 136/400 (34%), Positives = 195/400 (48%), Gaps = 39/400 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKGSCCAGQDVYDARRVC 80 +++V +SGGVDS+V A L+ G++V G +QL + SR S+ S + DA RV Sbjct: 11 KILVGLSGGVDSAVATARLQAAGHEVSGFFMQLESPSRPWSRPVTSAEPVDALADAHRVA 70 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + V V+D ERF V+ F +Y G TP PCV CNR +KF ++ R+ G D Sbjct: 71 DFLGVELQVWDLAERFNRVVMDSFVQAYRDGLTPNPCVHCNRFIKFGYVIERARREGFDY 130 Query: 141 LATGHYIRSRLY---------------VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 +ATGHY +RL+ VG+ + R + +DQSY L + L Sbjct: 131 VATGHY--ARLWRPGQAGLIPVGVPPTVGEGAFPDFALLRGSAIGKDQSYVLAGARAEAL 188 Query: 186 CDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 FPLGD+ K + R A +G+ +A K DS DICF+ G + R G AL G Sbjct: 189 ARAVFPLGDVTDKAATRAEAEALGIPVAGKRDSFDICFIPDGDTRGFL-RGCIGAAL-GP 246 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEV 300 IV +G ++G H+G YT+GQRRGL + G P +VV D ++ V V PR++L V Sbjct: 247 IVDEDGAVVGSHDGAFQYTVGQRRGLHIPRPHQDGAPRYVVGTDAETNTVFVAPRQALTV 306 Query: 301 HRIYL-REINWLGD------GLFEDAVVDGFKCFVKIRSSQDPV---PVFVQRNDDG--- 347 I +NWL D G + +D ++ R+ PV V ++ DG Sbjct: 307 TEIQAGPAVNWLTDPTRLGLGATGEGELDPVGLTIQFRAHGQPVTPRAVHLESGTDGTKL 366 Query: 348 -VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 V + GVA GQ+ V Y S RV+ I+ + Sbjct: 367 QVALPPTAGVTGVAPGQSLVLYQDSSQGDRVIAQATITAT 406 >gi|291276778|ref|YP_003516550.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter mustelae 12198] gi|290963972|emb|CBG39811.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter mustelae 12198] Length = 342 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 126/372 (33%), Positives = 186/372 (50%), Gaps = 40/372 (10%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+V + MSGGVDSS A LLK+ GY+V G L+L++ + + C +V Sbjct: 1 MKVALLMSGGVDSSYSAYLLKKQGYEVKGFYLKLHDKEEKHQVFLKNC--------HKVA 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + V + +E FR V F ++Y GETP PC CN +KF L + Q G + Sbjct: 53 QNLQIDFQVIEAKEEFRQKVYNEFVNAYQRGETPNPCALCNPLMKFGLALDIALQQGCER 112 Query: 141 LATGHYIRSRLYVGD-DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R +G DG R + D +DQSYFL+A +Q + L FPLGDM KE Sbjct: 113 IATGHYAR----IGHVDGVTR--IREAKDKTKDQSYFLYAISQDAINRLIFPLGDMLKEE 166 Query: 200 VRDLA----REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 V+ A +G ++ +SQ+ICFV+ Y D++K+ + + EG + + G +G Sbjct: 167 VKPQAFAAMPWLG-NLETYKESQEICFVET-DYIDILKK-HVNVEQEGIVRDVEGNAIGT 223 Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H G + YTIG+R+G V +P FV+ + + ++VG +E L I + Sbjct: 224 HKGYMQYTIGKRKGFSVRGAHDPHFVLKIHPEKNEIVVGKKEELATSLIEAQ-------- 275 Query: 315 LFEDAVVDGFKC---FVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 ++ FK VKIR P + D + +F + G A GQA V Y D Sbjct: 276 --NKSLPQNFKAGKYLVKIRYRSAPSEAALDLQDGRIIANFTEPVYGSAKGQALVVYVED 333 Query: 372 SNEARVLGGGII 383 +VLGGG+I Sbjct: 334 ----KVLGGGVI 341 >gi|306821577|ref|ZP_07455175.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550322|gb|EFM38315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 371 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 122/370 (32%), Positives = 193/370 (52%), Gaps = 26/370 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++ MSGGVDSSV A +LK GYDV G+ ++ ++ K C A QD D R+V D Sbjct: 7 KVILGMSGGVDSSVAAVILKEQGYDVTGIFMKNWDD----KNDDMCTAKQDYDDVRKVAD 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 ++ + +Y ++E+++ + V F Y G TP P V CN+ +KF L +L AD + Sbjct: 63 SLGIDYYTVNFEKQYWDEVFTYFLDEYKKGRTPNPDVMCNQEIKFKAFLDYALKLDADCI 122 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 A GHY R DGK + R +D +DQ+YFL Q+ L FP+G+++K VR Sbjct: 123 AMGHYARVE---EKDGK--FYLKRAVDNNKDQTYFLSRIGQKALSKTIFPIGEIEKSKVR 177 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGII 260 ++A+E L A K DS ICF+ + + + + ++ +GD++++ + + +G HNG+I Sbjct: 178 EIAKEHNLSTALKKDSTGICFIGERNFDTFLDKY--LLSKKGDMINVDDSKKIGSHNGLI 235 Query: 261 NYTIGQRRGLGVAMGE---PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF- 316 +YT+GQR+GLG+ P FV D + + V E + L + +G+ F Sbjct: 236 HYTLGQRKGLGIGGVGSGLPWFVAGKDIEKNILYVAQGEEHDS----LYSTSLIGEQPFW 291 Query: 317 --EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 E+ +KC K R Q + V V ++ + + V F+ V GQ VFY D Sbjct: 292 IMEEEPNFPYKCTAKFRYRQKDIAVTVHKDGENIRVVFDDKVKAVTPGQIAVFYDGDY-- 349 Query: 375 ARVLGGGIIS 384 +G II Sbjct: 350 --CMGSAIIK 357 >gi|186477293|ref|YP_001858763.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia phymatum STM815] gi|205811492|sp|B2JGI9|MNMA_BURP8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|184193752|gb|ACC71717.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia phymatum STM815] Length = 384 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 131/385 (34%), Positives = 182/385 (47%), Gaps = 32/385 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + S+ C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L LGA+ + Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R DG+ + R D +DQSYFL Q QL FPLGD+ K VR Sbjct: 122 ATGHYARVREI---DGRFELLKAR--DHTKDQSYFLHRLNQAQLSKTLFPLGDIPKTKVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + D + R G + +G+ +G H G+ Sbjct: 177 EIAEQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TRPGPMKTTDGKTVGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YT GQR+G+G+ GEP FV D S+ + V L + +W+ Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAGKDIESNTLYVAQGHDHPWLLSRTLTAGNTSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVF----VQRNDDGVY-VDFEKSEVGVASGQACVF 367 A G C K R Q D F + + ++ + F ++ V GQ+ V Sbjct: 295 ----HAPEVGHACAAKTRYRQADAACTFGAAGANADPNALFSLHFADAQWAVTPGQSAVL 350 Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392 Y D LGGGII + + V Sbjct: 351 YDGDV----CLGGGIIEHAATAQPV 371 >gi|171778579|ref|ZP_02919706.1| hypothetical protein STRINF_00558 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282802|gb|EDT48226.1| hypothetical protein STRINF_00558 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 406 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 136/370 (36%), Positives = 194/370 (52%), Gaps = 25/370 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V D Sbjct: 41 RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 97 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 98 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 157 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +++ +DG M R D +DQ+YFL +Q+QL + FPLG +KK VR Sbjct: 158 ATGHY--AQVSRDEDGTVH--MLRGADNNKDQTYFLSQLSQEQLEKVMFPLGHLKKPEVR 213 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H G++ Sbjct: 214 KIAERAGLVTAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTVDGRDMGEHAGLMY 271 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ P FVV D + + + VG ESL + I++ D Sbjct: 272 YTIGQRGGLGIGGQQGGDNAPWFVVGKDLSKNILYVGQGFYHESLMSTSLDASSIHFTRD 331 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ K R Q V V D V F++ + + GQA VFY + Sbjct: 332 -MPEEFTME---VTAKFRYRQPDSKVTVHVKGDKAEVIFDEPQRAITPGQAVVFYDGE-- 385 Query: 374 EARVLGGGII 383 LGGGII Sbjct: 386 --ECLGGGII 393 >gi|262278275|ref|ZP_06056060.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter calcoaceticus RUH2202] gi|262258626|gb|EEY77359.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter calcoaceticus RUH2202] Length = 377 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 122/374 (32%), Positives = 196/374 (52%), Gaps = 23/374 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ V D Sbjct: 4 RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTEY---CTAMEDLADAQAVAD 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F + YAAG TP P + CN+ +KF L LGAD + Sbjct: 61 KIGIKLHTANFAMEYWDRVFELFLAEYAAGRTPNPDILCNKEIKFRAFLDHAITLGADFI 120 Query: 142 ATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY R G+ + R +D +DQ+YFL A +++ FP+G+++K V Sbjct: 121 ATGHYARRGETAYNSKGEAYAPLLRGVDNNKDQTYFLHAVHGKEINKTLFPVGEIEKPEV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+ L A K DS ICF+ + ++ D +K+ A G IV G+ +G H+G++ Sbjct: 181 RRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDTGKEVGEHHGLM 238 Query: 261 NYT-----IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312 YT GL A FV++ D ++R+++G ++ +++ I+W+ Sbjct: 239 YYTLGQRGGIGLGGLKGAAEGAWFVLHKDIANNRLVIGQGHEHPLMQSTQLWSESIDWVA 298 Query: 313 DGLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYT 369 ++ +G +C K R Q VF N + GV V+F++ + V GQ+ VFY+ Sbjct: 299 GE--QNIPAEGLRCTAKTRYRQPDQACTVFNDENSEHGVRVEFDEPQRAVTPGQSVVFYS 356 Query: 370 SDSNEARVLGGGII 383 + LGGG+I Sbjct: 357 DEV----CLGGGVI 366 >gi|289679182|ref|ZP_06500072.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. syringae FF5] Length = 246 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 97/252 (38%), Positives = 147/252 (58%), Gaps = 10/252 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 3 RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F Y AG TP P + CNR +KF L LGAD++ Sbjct: 60 KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K VR Sbjct: 120 ATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH+G++ Sbjct: 175 AIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMY 232 Query: 262 YTIGQRRGLGVA 273 +TIGQR+GLG+ Sbjct: 233 HTIGQRQGLGIG 244 >gi|94676746|ref|YP_588863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|166991122|sp|Q1LT51|MNMA_BAUCH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|94219896|gb|ABF14055.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 368 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 123/380 (32%), Positives = 201/380 (52%), Gaps = 34/380 (8%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N + +V+V MSGGVDSSV A LL + GY V G+ ++ + + + C +D+ DA Sbjct: 2 NIINKKVIVGMSGGVDSSVSALLLLQQGYTVEGLFMKNW---EEDDHEQYCTVAKDLADA 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQ 135 + VC+ + + + ++ + + V F + Y G TP P + CN+ +KF L T+ Sbjct: 59 QAVCNQLGIILHKVNFAAEYWDNVFEYFLAEYQVGRTPNPDILCNKNIKFKVFLDFATQN 118 Query: 136 LGADVLATGHY-IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD +ATGHY IR + +GK R + R +D ++DQSYFL+ QQ+ FPLG Sbjct: 119 LGADYIATGHYVIRKDI----NGKSR--LLRGLDNQKDQSYFLYTIGYQQMARCFFPLGK 172 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 + K VR++A + GL A K DS ICF+ + K D++ R + A G I+ ++ + +G Sbjct: 173 LNKLRVREIAAKQGLVTASKKDSTGICFIGKRKLSDLLSRYIS--AKPGAIITVDNEYIG 230 Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIY 304 H G++ YT+GQR+ LG+ +P +VV D N + +I+ PR L + + Sbjct: 231 YHQGLMYYTLGQRKKLGIGGTKNGSQDPWYVVDKDINHNLLIIAQGHNHPR--LMSNGLI 288 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363 ++ W+ + +C VK R Q + ++ ++ + VDF+ V GQ Sbjct: 289 ASKLYWVD----RTTLSTPLRCTVKTRYRQSDIGCLIKPIANNQLQVDFDYPVAAVTPGQ 344 Query: 364 ACVFYTSDSNEARVLGGGII 383 + VFY ++ + +GGG I Sbjct: 345 SAVFYLAE----QCIGGGTI 360 >gi|326771916|ref|ZP_08231201.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinomyces viscosus C505] gi|326638049|gb|EGE38950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinomyces viscosus C505] Length = 395 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 140/399 (35%), Positives = 194/399 (48%), Gaps = 32/399 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ A+SGGVDS+V AA G++V+GV + L +R A R GS CC+ +D DAR Sbjct: 1 MRVLAALSGGVDSAVAAARAVDAGHEVVGVHMALTRNR-AQTRSGSRGCCSIEDSADARW 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + YV+D E F V+ F Y AG TP PCV CN VKF LL LG Sbjct: 60 AAQILGIPFYVWDLSEEFEERVVSDFLDEYRAGRTPNPCVRCNERVKFDALLERALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRR-----IMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 D +ATGHY +RL G R + R +D +DQSY L + ++ L FPLG Sbjct: 120 DAVATGHY--ARLSGGASSGRPGDPEGLTLRRAVDAAKDQSYVLAVSGREGLARTLFPLG 177 Query: 194 DMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 D K VR A GL +A K DS DICFV G + R A EG +V +G++ Sbjct: 178 DAPSKAQVRAEAEARGLPVASKPDSYDICFVADGDTRGFLTRSLG--AHEGAMVSPDGEV 235 Query: 253 LGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRI----- 303 LG H G +T+GQR+GLG++ G P +V+ ++ V+VGP E L + Sbjct: 236 LGTHQGYFGFTVGQRKGLGLSQPAEDGRPRYVIETRPATNEVVVGPEELLSRTAVDSDGL 295 Query: 304 -------YLREINWLGDGLFEDAVVDGFK-CFVKIRSSQDPVP--VFVQRNDDGVYVDFE 353 L G +D+ G++ V++R+ PVP V V ++ + Sbjct: 296 VLLAAPEPLTTGPDTGTTDSDDSPAVGWQEASVQVRAHGRPVPARVRVDAAQGLLHAELA 355 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAV 392 GVA+GQ+ V Y D + + + S S V Sbjct: 356 TPLRGVAAGQSLVVYGGDDGDQVLAQATVTSAPASSHPV 394 >gi|298346268|ref|YP_003718955.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mobiluncus curtisii ATCC 43063] gi|298236329|gb|ADI67461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mobiluncus curtisii ATCC 43063] Length = 409 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 135/400 (33%), Positives = 195/400 (48%), Gaps = 39/400 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKGSCCAGQDVYDARRVC 80 +++V +SGGVDS+V A L+ G++V G +QL + SR S+ S + DA RV Sbjct: 8 KILVGLSGGVDSAVATARLQAAGHEVSGFFMQLESPSRPWSRPVTSAEPVDALADAHRVA 67 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + V V+D ERF V+ F +Y G TP PCV CNR +KF ++ R+ G D Sbjct: 68 DFLGVELQVWDLAERFNRVVMDSFVQAYRDGLTPNPCVHCNRFIKFGYVIERARREGFDY 127 Query: 141 LATGHYIRSRLY---------------VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 +ATGHY +RL+ V + + R + +DQSY L + L Sbjct: 128 VATGHY--ARLWRPGQVGLIPVGVPPTVAEGAFPDFALLRGSAIGKDQSYVLAGARAEAL 185 Query: 186 CDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 FPLGD+ K + R A +G+ +A K DS DICF+ G + R G AL G Sbjct: 186 ARAVFPLGDVTDKAATRAEAEALGIPVAGKRDSFDICFIPDGDTRGFL-RGCIGAAL-GQ 243 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEV 300 IV +G ++G H+G YT+GQRRGL + G P +VV D ++ V V PR++L V Sbjct: 244 IVDEDGAVVGSHDGAFQYTVGQRRGLHIPRPHQDGAPRYVVGTDAETNTVFVAPRQALTV 303 Query: 301 HRIYL-REINWLGD------GLFEDAVVDGFKCFVKIRSSQDPV---PVFVQRNDDGVYV 350 I +NWL D G + +D ++ R+ PV V ++ + DG + Sbjct: 304 TEIQAGPAVNWLTDPTRLGLGATGEGELDPVGLTIQFRAHGQPVTPQAVHLESSTDGTKL 363 Query: 351 DFEKSE----VGVASGQACVFYTSDSNEARVLGGGIISGS 386 S GVA GQ+ V Y S RV+ I+ + Sbjct: 364 QVALSPTAGVTGVAPGQSLVLYQDSSQGDRVIAQATITAT 403 >gi|209560263|ref|YP_002286735.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes NZ131] gi|229487429|sp|B5XJA6|MNMA_STRPZ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|209541464|gb|ACI62040.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Streptococcus pyogenes NZ131] Length = 373 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 136/371 (36%), Positives = 194/371 (52%), Gaps = 25/371 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V Sbjct: 7 IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 64 DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + V D + M R D +DQ+YFL +Q+QL FPLG ++K V Sbjct: 124 VATGHYAQ----VKRDENGKVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H G++ Sbjct: 180 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLM 237 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YTIGQR GLG+ +P FVV D + + + VG E+L + + I++ Sbjct: 238 YYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTR 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + E F+C K R Q V V D V F + + + GQA VFY D Sbjct: 298 EMPEEFT----FECTAKFRYRQPDSHVTVHVRGDKAEVVFAEPQRAITPGQAVVFY--DG 351 Query: 373 NEARVLGGGII 383 E LGGG+I Sbjct: 352 KEC--LGGGMI 360 >gi|306832460|ref|ZP_07465612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425360|gb|EFM28480.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 393 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 134/370 (36%), Positives = 196/370 (52%), Gaps = 25/370 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V D Sbjct: 28 RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 84 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 85 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 144 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +++ +DG M R D +DQ+YFL +Q+QL + FPLG ++K VR Sbjct: 145 ATGHY--AQVSRDEDGTVH--MLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLEKPEVR 200 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS ICF+ + + + + + A +G ++ ++G+ +G H G++ Sbjct: 201 KIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEHAGLMY 258 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ +P FVV D + + + VG +SL + I++ D Sbjct: 259 YTIGQRGGLGIGGQQGGDNQPWFVVGKDLSKNILYVGQGFYHDSLMSTSLDASSIHFTRD 318 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ K R Q V V D V F++ + + GQA VFY + Sbjct: 319 -MPEEFTME---VTAKFRYRQPDSKVTVHVKGDKAEVVFDEPQRAITPGQAVVFYDGE-- 372 Query: 374 EARVLGGGII 383 LGGGII Sbjct: 373 --ECLGGGII 380 >gi|195979019|ref|YP_002124263.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|229487422|sp|B4U0P1|MNMA_STREM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|195975724|gb|ACG63250.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 374 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 137/372 (36%), Positives = 191/372 (51%), Gaps = 29/372 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V D Sbjct: 9 RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 65 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y +G TP P V CN+ +KF L LGAD + Sbjct: 66 QIGIPYYSVNFEKEYWDRVFEYFLAEYRSGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 125 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + + D M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 126 ATGHYAQ----IKRDENGVVHMLRGLDKGKDQTYFLSQLSQEQLQKTMFPLGHLQKSEVR 181 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + GL A K DS ICF+ + + + A +G ++ ++G+ +G H G++ Sbjct: 182 AIAEQAGLATAKKKDSTGICFIGEKNFKTFLSHYLP--AQKGRMMTVDGRDMGEHAGLMY 239 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ +P FVV D + + + VG ESL + I Sbjct: 240 YTIGQRGGLGIGGQQGGDNKPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASVIQ---- 295 Query: 314 GLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 F V + F +C K R Q V V D V F + + + GQA VFY D Sbjct: 296 --FTREVPEEFTLECTAKFRYRQPDSKVTVHVKKDKAKVVFAEPQRAITPGQAVVFY--D 351 Query: 372 SNEARVLGGGII 383 +E LGGGII Sbjct: 352 GHEC--LGGGII 361 >gi|325979485|ref|YP_004289201.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325179413|emb|CBZ49457.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 373 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 134/370 (36%), Positives = 193/370 (52%), Gaps = 25/370 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R D +DQ+YFL +Q+QL + FPLG ++K VR Sbjct: 125 ATGHYAQ----VSRDEDGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS ICF+ + + + + + A +G ++ ++G+ +G H G++ Sbjct: 181 KIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ +P FVV D + + + VG +SL + I++ D Sbjct: 239 YTIGQRGGLGIGGQQGGDNQPWFVVGKDLSKNILYVGQGFYHDSLMSTSLDASSIHFTRD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ K R Q V V D V F++ + + GQA VFY + Sbjct: 299 -MPEEFTME---VTAKFRYRQPDSKVTVHVKGDKAEVVFDEPQRAITPGQAVVFYDGE-- 352 Query: 374 EARVLGGGII 383 LGGGII Sbjct: 353 --ECLGGGII 360 >gi|329116668|ref|ZP_08245385.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus parauberis NCFD 2020] gi|326907073|gb|EGE53987.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus parauberis NCFD 2020] Length = 372 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 136/372 (36%), Positives = 196/372 (52%), Gaps = 25/372 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V Sbjct: 5 NTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDELGVCTATEDYKDVAAV 61 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 62 ADQIGIPYYSVNFEKEYWDRVFEYFLAEYKAGRTPNPDVMCNKEIKFKAFLDYAMTLGAD 121 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + + D M R +D +DQ+YFL +Q+QL FPLG ++K Sbjct: 122 YVATGHYAQ----IERDQYGTVHMLRGVDNGKDQTYFLSQLSQKQLQKTLFPLGHLQKPE 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A + GL A K DS ICF+ + + + + A +G ++ ++G+ +G H G+ Sbjct: 178 VRAIAEKAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMLTVDGRDMGEHAGL 235 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + YTIGQR GLG+ +P FVV D + + + VG ESL + I++ Sbjct: 236 MYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASTIHFT 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + + E+ ++ C K R Q V V D V F++ + + GQA VFY D Sbjct: 296 KE-MPEEFTME---CTAKFRYRQPDSKVTVHVKGDKAEVIFDEEQRAITPGQAVVFY--D 349 Query: 372 SNEARVLGGGII 383 E LGGGII Sbjct: 350 GQEC--LGGGII 359 >gi|146311302|ref|YP_001176376.1| tRNA-specific 2-thiouridylase MnmA [Enterobacter sp. 638] gi|205816867|sp|A4W9E5|MNMA_ENT38 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|145318178|gb|ABP60325.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterobacter sp. 638] Length = 369 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 130/381 (34%), Positives = 203/381 (53%), Gaps = 30/381 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + +PK +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ Sbjct: 1 MSASPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADL 55 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 56 ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + LGAD +ATGHY+R R V DGK + + R +D +DQSYFL+ Q+ FP+ Sbjct: 116 AEDLGADFIATGHYVR-RADV--DGKSQ--LLRGLDGNKDQSYFLYTLGHDQIVQSLFPV 170 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR +A + L A K DS ICF+ + K+ + + R A G I+ ++G Sbjct: 171 GELEKPEVRKIAENLDLITAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDD 228 Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL- 305 +G H G++ +T+GQR+GLG+ EP +VV D +N+ V+ E + + L Sbjct: 229 VGEHQGLMYHTLGQRKGLGIGGTKEGSEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLI 288 Query: 306 -REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQ 363 ++++W+ F + +C VK R Q +P V D+ V V F++ V GQ Sbjct: 289 AQQLHWVDREPFTGTL----RCTVKTRYRQTDIPCTVTALDEERVEVRFDEPVSAVTPGQ 344 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY+ + LGGGII Sbjct: 345 SAVFYSGEI----CLGGGIIE 361 >gi|304387037|ref|ZP_07369292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis ATCC 13091] gi|304338909|gb|EFM05008.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis ATCC 13091] Length = 367 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 128/383 (33%), Positives = 190/383 (49%), Gaps = 26/383 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++ NP + ++V +SGGVDSSV AALLK+ GY V GV +Q + + C Q Sbjct: 1 MNTTANPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 55 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 56 DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 115 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 116 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 170 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 171 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 228 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308 +G H G++ YT+GQR+GLG+ GEP FV L KN V+ G L +Y R + Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 284 Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 N L L E + C + R + P + +D+ + F++ + V GQ+ V Sbjct: 285 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCEL-RYLDDETAELVFDEPQWAVTPGQSAV 343 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 Y D LGGGII + + Sbjct: 344 LYDGDI----CLGGGIIQSTDKP 362 >gi|237719106|ref|ZP_04549587.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229451485|gb|EEO57276.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 361 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 123/387 (31%), Positives = 191/387 (49%), Gaps = 59/387 (15%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV+V MSGG+DS+ +L+ GY+++GVT++++ G + DAR Sbjct: 4 RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + HYV D F+ ++ F Y G TP PCV CN KF L +L Sbjct: 50 LAERMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109 Query: 139 DVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 +ATGHY R +Y+ GDD K +DQSYFL+ Q L FP Sbjct: 110 AWVATGHYSRLEEKNGNIYIVAGDDDK------------KDQSYFLWRLGQDVLKRCIFP 157 Query: 192 LGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVH 247 LGD K VR+ E G + K +S ++CF+ +G Y + ++ + E G V+ Sbjct: 158 LGDYTKVKVREYLAEKGYEAKSKEGESMEVCFI-KGDYREFLREQCPELDSEIGPGWFVN 216 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 G LG+H G YTIGQR+GL +A+G+P +V+ ++ + V++G + LE + Sbjct: 217 SEGVKLGKHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGNADQLETEYMLAE- 275 Query: 308 INWLGDGLFEDAVVDGFKCF------VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360 +D +VD + F V+IR P+P V+R +DG + + F + +A Sbjct: 276 ---------QDKMVDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLIRFLEIASAIA 326 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSK 387 GQ+ VFY RVLGG I+ + Sbjct: 327 PGQSAVFYDG----KRVLGGAFIASQR 349 >gi|194097878|ref|YP_002000923.1| tRNA-specific 2-thiouridylase MnmA [Neisseria gonorrhoeae NCCP11945] gi|239998356|ref|ZP_04718280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae 35/02] gi|240016919|ref|ZP_04723459.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae FA6140] gi|240079741|ref|ZP_04724284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae FA19] gi|240116431|ref|ZP_04730493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae PID18] gi|240122374|ref|ZP_04735330.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae PID332] gi|240125108|ref|ZP_04737994.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|254494442|ref|ZP_05107613.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae 1291] gi|260441652|ref|ZP_05795468.1| tRNA-specific 2-thiouridylase MnmA [Neisseria gonorrhoeae DGI2] gi|268594219|ref|ZP_06128386.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae 35/02] gi|268595888|ref|ZP_06130055.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae FA19] gi|268602098|ref|ZP_06136265.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae PID18] gi|268680964|ref|ZP_06147826.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae PID332] gi|268683706|ref|ZP_06150568.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|291045029|ref|ZP_06570737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae DGI2] gi|193933168|gb|ACF28992.1| Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae NCCP11945] gi|226513482|gb|EEH62827.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae 1291] gi|268547608|gb|EEZ43026.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae 35/02] gi|268549676|gb|EEZ44695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae FA19] gi|268586229|gb|EEZ50905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae PID18] gi|268621248|gb|EEZ53648.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae PID332] gi|268623990|gb|EEZ56390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|291011032|gb|EFE03029.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae DGI2] gi|317163647|gb|ADV07188.1| tRNA-specific 2-thiouridylase MnmA [Neisseria gonorrhoeae TCDC-NG08107] Length = 383 Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 127/382 (33%), Positives = 189/382 (49%), Gaps = 24/382 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + + C Q Sbjct: 15 LRMNTTSNTSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWENDDNDE---YCSIKQ 71 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 72 DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 131 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 132 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 186 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 187 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 244 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308 +G H G++ YT+GQR+GLG+ GEP FV L KN V+ G L +Y R + Sbjct: 245 TIGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 300 Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 N L L E + C + R + P + +D+ + F++ + V GQ+ V Sbjct: 301 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCEL-CYLDDETAELVFDEPQWAVTPGQSAV 359 Query: 367 FYTSDSNEARVLGGGIISGSKR 388 Y D LGGGII + + Sbjct: 360 LYDVDI----CLGGGIIQTTDK 377 >gi|24638305|sp|Q8NZ00|MNMA_STRP8 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 373 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 136/371 (36%), Positives = 195/371 (52%), Gaps = 25/371 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V Sbjct: 7 IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 64 DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLGYAMTLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K V Sbjct: 124 VATGHYAQ----VKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H G++ Sbjct: 180 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLM 237 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YTIGQR GLG+ +P FVV D + + + VG E+L + + I++ Sbjct: 238 YYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTR 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + + E+ F+C K R Q V V D V F + + + GQA VFY D Sbjct: 298 E-MPEEFT---FECTAKFRYRQPDSQVTVHVRGDKAEVVFAEPQRAITPGQAVVFY--DG 351 Query: 373 NEARVLGGGII 383 E LGGG+I Sbjct: 352 KEC--LGGGMI 360 >gi|110834136|ref|YP_692995.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alcanivorax borkumensis SK2] gi|123149502|sp|Q0VQ25|MNMA_ALCBS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|110647247|emb|CAL16723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alcanivorax borkumensis SK2] Length = 364 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 125/379 (32%), Positives = 193/379 (50%), Gaps = 28/379 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K P+D RV+V MSGGVDSSV AA L GY V G+ ++ +N + C A +D+ Sbjct: 1 MTKAPQDTRVIVGMSGGVDSSVAAARLIDAGYQVEGLFMKNWNEDDGTDY---CTAREDL 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA +V + + + ++ E++ + V F + Y AG TP P + CN+ +KF L Sbjct: 58 LDAMQVAGVLGIELHTANFAEQYWDRVFAHFLAEYKAGRTPNPDILCNKEIKFQAFLDHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + V GK + + R +D +DQ+YFL A Q+ FPLG Sbjct: 118 ITLGADYIATGHYSQ----VSHTGKAK--LLRAVDTNKDQTYFLHAVDYQKFDRTLFPLG 171 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 D++K VR +A + G D K DS ICF+ + ++ D +++ A G I +G ++ Sbjct: 172 DLEKPEVRRIAEQKGFDNHKKKDSTGICFIGERRFKDFLEQYLP--AQPGSIEDDHGNVI 229 Query: 254 GRHNGIINYTIGQRRGLGV-----AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIY-L 305 G+H+G++ YT+GQR+GLG+ A P +V L++N + G L R+ Sbjct: 230 GQHDGLMYYTLGQRQGLGIGGLASASEAPWYVAKKDLERNVLIAVQGTDHPLLYSRVLNS 289 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364 + W+ +A + K R Q V +G V V F++ + V GQ+ Sbjct: 290 APMQWVA----LEAPALPARLTAKTRYRQPDQGCTVSDAGEGRVTVTFDEPQRAVTPGQS 345 Query: 365 CVFYTSDSNEARVLGGGII 383 VFY + LGG +I Sbjct: 346 VVFY----DGPVCLGGAVI 360 >gi|92114562|ref|YP_574490.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chromohalobacter salexigens DSM 3043] gi|122419524|sp|Q1QUR7|MNMA_CHRSD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|91797652|gb|ABE59791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chromohalobacter salexigens DSM 3043] Length = 384 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 123/372 (33%), Positives = 188/372 (50%), Gaps = 29/372 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A L GY V G+ ++ ++ ++ C A +D+ DA+ VCD Sbjct: 17 KVIVGMSGGVDSSVTALTLLEQGYAVEGLFMKNWDEDDGTEY---CTAKEDLADAQAVCD 73 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 T+ ++ + ++ + + V F + Y AG TP P + CNR +KF L LGA+ + Sbjct: 74 TLGITLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKVFLEYAEMLGAEKI 133 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R DG R + + +D +DQSYFL A + + FP+G+M+K VR Sbjct: 134 ATGHYVRQGW---RDGHCR--LLKGLDANKDQSYFLHAVPEVAIARTLFPVGEMEKSEVR 188 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS ICF+ + ++ D +K+ A G I G+++G H G++ Sbjct: 189 AIAERHGLTTARKKDSTGICFIGERRFSDFLKQYLP--AQPGVIETPEGEVIGEHMGLMY 246 Query: 262 YTIGQRRGLGVA-----MGEPLFVVY--LDKNSSRVIVGPRES-LEVHRIYLREINWL-G 312 YT+GQR+GLG+ P +V L++N + G L + + W+ G Sbjct: 247 YTLGQRQGLGIGGLPNHPDAPWYVAAKDLERNVLIAVQGKHHPLLYTDSLSTEPVEWVAG 306 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSD 371 +A + K R Q V V+ D GV F++ + V GQ+ V Y D Sbjct: 307 QPPAPEARLQ-----AKTRYRQQDVACHVRVLEDGGVEARFDEPQRAVTPGQSLVLYDGD 361 Query: 372 SNEARVLGGGII 383 LGGG+I Sbjct: 362 I----CLGGGVI 369 >gi|315920277|ref|ZP_07916517.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694152|gb|EFS30987.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 361 Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 123/387 (31%), Positives = 190/387 (49%), Gaps = 59/387 (15%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV+V MSGG+DS+ +L+ GY+++GVT++++ G + DAR Sbjct: 4 RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + HYV D F+ ++ F Y G TP PCV CN KF L +L Sbjct: 50 LAVRMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109 Query: 139 DVLATGHYIR-------SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 +ATGHY R + + GDD K +DQSYFL+ Q+ L FP Sbjct: 110 AWIATGHYSRLEEKNGYTYIVAGDDDK------------KDQSYFLWRLGQEVLKRCIFP 157 Query: 192 LGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVH 247 LGD K VR+ E G + K +S ++CF+ +G Y D ++ + E G V+ Sbjct: 158 LGDYTKVKVREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPEMDSEIGPGWFVN 216 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 G LG+H G YTIGQR+GL +A+G+P +V+ ++ + V++G + L + Sbjct: 217 SEGVKLGQHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLNTEYMLAE- 275 Query: 308 INWLGDGLFEDAVVDGFKCF------VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360 +D +VD + F V+IR P+P V+R +DG + V F ++ +A Sbjct: 276 ---------QDKIVDEQELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAIA 326 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSK 387 GQ+ VFY RVLGG I+ + Sbjct: 327 PGQSAVFYDG----RRVLGGAFIASQR 349 >gi|313668065|ref|YP_004048349.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methy lt ransferase [Neisseria lactamica ST-640] gi|313005527|emb|CBN86963.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methy lt ransferase [Neisseria lactamica 020-06] Length = 383 Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 128/382 (33%), Positives = 190/382 (49%), Gaps = 26/382 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++ NP + ++V +SGGVDSSV AALLK+ GY V GV +Q + + C Q Sbjct: 17 MNTTANPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 71 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 72 DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLD 131 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 132 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERAIFP 186 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 187 LGGLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGE 244 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308 +G H G++ YT+GQR+GLG+ GEP FV L KN V+ G L +Y R + Sbjct: 245 TVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 300 Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 N L L E + C + R + P + +D+ + F++ + V GQ+ V Sbjct: 301 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCEL-RYLDDETAELVFDEPQWAVTPGQSAV 359 Query: 367 FYTSDSNEARVLGGGIISGSKR 388 Y D LGGGII + + Sbjct: 360 LYDGDI----CLGGGIIQTTDK 377 >gi|291166309|gb|EFE28355.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Filifactor alocis ATCC 35896] Length = 371 Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 130/389 (33%), Positives = 196/389 (50%), Gaps = 32/389 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++ MSGGVDSSV A LLK+ GY+V+G+ ++ ++ + G C A QD D RV Sbjct: 4 KVILGMSGGVDSSVSALLLKQQGYEVVGLFMKNWDEKDEG---GVCTATQDYEDVMRVAG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + Y ++E+ + + V F + Y G TP P V CN+ +KF+ L +L AD + Sbjct: 61 QLEIPFYTVNFEKEYWDRVFSYFLNEYEHGRTPNPDVMCNQEIKFNAFLDYALKLEADYI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 A GHY G R + R D +DQSYFL T++ L FP+ D++K VR Sbjct: 121 AMGHYAGVLKKNG-----RYYLRRGKDANKDQSYFLSRITEEALSKTIFPIADLEKSEVR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQ---GKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +LA + L A K DS +CF+ + K+ D + N G+ I+ ++G+ +G H G Sbjct: 176 ELAEKYRLYTATKKDSTGVCFIGERNFDKFLDQFLKTNPGL-----ILTVDGKKIGEHTG 230 Query: 259 IINYTIGQRR---GLGVAMGEPLFVVY--LDKNSSRVIVGPRE-SLEVHRIYLREINWLG 312 +I+YTIGQR+ GV GEP FV L KN V G + SL + ++ W+ Sbjct: 231 LIHYTIGQRKGIGIGGVGSGEPWFVAGKDLKKNILYVAQGEQHPSLYTTELLGEDVVWI- 289 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + F+ K R Q +PV V + D+GV V +++ + GQ VFY + Sbjct: 290 ----TEKPQFPFRGTAKFRYRQKDIPVTVYEHQDEGVRVVYDEPVRSITPGQFAVFYDGE 345 Query: 372 SNEARVLGGGIISGSKRSDAVEESLLSVI 400 LG II+ K + E L V+ Sbjct: 346 I----CLGSAIITKGKPLNMKYEYLHDVV 370 >gi|306834574|ref|ZP_07467687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus bovis ATCC 700338] gi|304423376|gb|EFM26529.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus bovis ATCC 700338] Length = 373 Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 136/370 (36%), Positives = 196/370 (52%), Gaps = 25/370 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +++ +DG M R D +DQ+YFL +Q+QL + FPLG ++K VR Sbjct: 125 ATGHY--AQVSRDEDGIVH--MLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS ICF+ + + + + + A +G ++ ++G+ +G H G++ Sbjct: 181 KIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ +P FVV D + + + VG ESL + I++ D Sbjct: 239 YTIGQRGGLGIGGQQGGDNQPWFVVGKDLSKNILYVGQGFYHESLMSTSLDASSIHFTRD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ K R Q V + D V F + + + GQA VFY D Sbjct: 299 -MPEEFTME---VTAKFRYRQPDSKVTIHVKGDKAEVVFAEPQRAITPGQAVVFY--DGK 352 Query: 374 EARVLGGGII 383 E LGGGII Sbjct: 353 EC--LGGGII 360 >gi|51246807|ref|YP_066691.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfotalea psychrophila LSv54] gi|81641104|sp|Q6AIZ6|MNMA_DESPS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|50877844|emb|CAG37684.1| probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfotalea psychrophila LSv54] Length = 344 Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 113/360 (31%), Positives = 188/360 (52%), Gaps = 25/360 (6%) Query: 25 VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84 +AMSGGVDS+ A L K+ G V+G ++L ++R ++ ++ Sbjct: 8 IAMSGGVDSTATAILQKQKG-PVLGFFMKLNQPDYETQRD----------RVSQIAQKLD 56 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + + D E F+ V+ F++SY G TP PC+ CN+ +KF + G + +ATG Sbjct: 57 IKLEIIDLTEEFQEYVLKYFSASYFKGLTPNPCIICNKEIKFGLFQQAILRQGVERIATG 116 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY ++++ G + + + +D +DQSYFL +Q+QL FPLG M K ++ DL Sbjct: 117 HY--AQIHKTAAGYQ---LHKGVDPHKDQSYFLSRLSQEQLAHSIFPLGGMHKGAIYDLV 171 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI 264 G ++SQD+CF++Q D +++ A G+IV +G+ILG+H G+ YT+ Sbjct: 172 EAHGFHDFRGTESQDVCFLEQDNVVDFLEQTAEFSASSGNIVMNDGKILGKHKGLHRYTV 231 Query: 265 GQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGF 324 GQRRGLG++ PL+V+ LD ++ VIVG E L + + +I+W+ ED + Sbjct: 232 GQRRGLGISYPVPLYVINLDVKNNNVIVGENEQLFHKTMAISDIHWISQPEREDLL---- 287 Query: 325 KCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 V IRS+ + + ++ V F++ + + GQ Y + +VLG G+I Sbjct: 288 HASVHIRSTHKGAQASVILKENNRASVIFDEPQRAITPGQFATIY----KDTQVLGSGVI 343 >gi|157150902|ref|YP_001449344.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus gordonii str. Challis substr. CH1] gi|189040513|sp|A8AU84|MNMA_STRGC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|157075696|gb|ABV10379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus gordonii str. Challis substr. CH1] Length = 373 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 134/379 (35%), Positives = 195/379 (51%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYAQ----VKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS ICF+ + + + + + A G ++ L G+ +G+H G++ Sbjct: 181 SIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ EP FVV D + + + VG ++L + ++++ + Sbjct: 239 YTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHFTKE 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ C K R Q V V D V F + + + GQA VFY + Sbjct: 299 -MPEEFTME---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE-- 352 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I + R V Sbjct: 353 --ECLGGGLIDNAYRDGKV 369 >gi|139474609|ref|YP_001129325.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pyogenes str. Manfredo] gi|68053070|sp|Q5X9C1|MNMA_STRP6 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|166235086|sp|A2RH05|MNMA_STRPG RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205829106|sp|Q1J455|MNMA_STRPF RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|134272856|emb|CAM31137.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pyogenes str. Manfredo] Length = 373 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 136/371 (36%), Positives = 193/371 (52%), Gaps = 25/371 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V Sbjct: 7 IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 64 DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K V Sbjct: 124 VATGHYAQ----VKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H G++ Sbjct: 180 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLM 237 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YTIGQR GLG+ +P FVV D + + + VG E+L + + I++ Sbjct: 238 YYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTR 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + E F+C K R Q V V D V F + + + GQA VFY D Sbjct: 298 EMPEEFT----FECTAKFRYRQPDSQVTVHVRGDKAEVVFAEPQRAITPGQAVVFY--DG 351 Query: 373 NEARVLGGGII 383 E LGGG+I Sbjct: 352 KEC--LGGGMI 360 >gi|310657467|ref|YP_003935188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium sticklandii DSM 519] gi|308824245|emb|CBH20283.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium sticklandii] Length = 372 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 122/370 (32%), Positives = 195/370 (52%), Gaps = 26/370 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVV+ MSGGVDSSV A +LK GYDV+G+ ++ ++ + G C A +D D RRV D Sbjct: 4 RVVLGMSGGVDSSVSAVILKEAGYDVVGIFMKNWDEKDED---GVCTATEDYEDVRRVAD 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + +Y ++E+ + + V F Y G TP P V CN+ +KF+ L +L AD + Sbjct: 61 QLGIPYYTVNFEKEYWDRVFSYFLDEYNKGRTPNPDVMCNQEIKFNAFLDYALKLDADYI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 A GHY R DGK + R +D +DQ+YFL Q+ L FP+G+++K VR Sbjct: 121 AMGHYARVE---ERDGK--FYLLRGVDNNKDQTYFLSRIGQKALSKSLFPIGELEKSKVR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGII 260 ++A + L A K DS +CF+ + + + + ++ +GD+++++ G+ + +H+G+ Sbjct: 176 EIAEKNELYTAKKKDSTGVCFIGERDFDAFLDKY--LLSKKGDMINVDTGKKISQHHGLY 233 Query: 261 NYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG--- 314 +YT+GQR+ GV GEP FVV D + + V E E L + +G+ Sbjct: 234 HYTLGQRKGIGIGGVGSGEPWFVVGKDLKKNLLYVAQGEQHEA----LYSTSLIGEAPAW 289 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 ++ V C K R Q +PV V + +DG +++ ++ V GQ V Y +D Sbjct: 290 TLDEEPVFPLHCTAKFRYRQQDIPVTVHKMEDGNIHIVYDNPVKAVTPGQVAVLYDADI- 348 Query: 374 EARVLGGGII 383 LG II Sbjct: 349 ---CLGSSII 355 >gi|240127089|ref|ZP_04739750.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|268685447|ref|ZP_06152309.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|268625731|gb|EEZ58131.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae SK-93-1035] Length = 383 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 127/382 (33%), Positives = 189/382 (49%), Gaps = 24/382 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + + C Q Sbjct: 15 LRMNTTSNTSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWENDDNDE---YCSIKQ 71 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 72 DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 131 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 132 YAVGQGADTIATGHYARKEVRNG-----VHYLFKGLDRNKDQSYFLYRLKPFQLERAIFP 186 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 187 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 244 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308 +G H G++ YT+GQR+GLG+ GEP FV L KN V+ G L +Y R + Sbjct: 245 TIGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 300 Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 N L L E + C + R + P + +D+ + F++ + V GQ+ V Sbjct: 301 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCEL-CYLDDETAELVFDEPQWAVTPGQSAV 359 Query: 367 FYTSDSNEARVLGGGIISGSKR 388 Y D LGGGII + + Sbjct: 360 LYDVDI----CLGGGIIQTTDK 377 >gi|242309155|ref|ZP_04808310.1| tRNA methyltransferase [Helicobacter pullorum MIT 98-5489] gi|239524196|gb|EEQ64062.1| tRNA methyltransferase [Helicobacter pullorum MIT 98-5489] Length = 349 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 116/370 (31%), Positives = 192/370 (51%), Gaps = 34/370 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++ MSGGVDSS A LL++ GY V G+ L+L+N + + + ++ + Sbjct: 3 KVLLLMSGGVDSSYCAYLLQKQGYSVYGIYLKLHNKDEKHQYYTQ--------NIQKCSE 54 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + + D E F+ +V F SY G TP PC CN VKF + ++L D + Sbjct: 55 YLKIPYQIVDERELFKKSVYDYFVESYKQGLTPNPCAMCNPNVKFHIAFKLAKELNCDFV 114 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + + +G+ + + +D +DQSYFLF Q+ + + FPLGD KKE ++ Sbjct: 115 ATGHYAQIQ-----NGR----IAQAVDTHKDQSYFLFGLKQEWIDRIIFPLGDKKKEEIK 165 Query: 202 DLA-REMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +A +E+ + DSQ+ICFV+ Y D++++ GD++ G +G H G Sbjct: 166 PIALKELPWLGTLETYKDSQEICFVENS-YIDILQKY-YNTDKTGDVLDSKGNKIGTHKG 223 Query: 259 IINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 + YTIG+R+G + P +V+ ++ + +IVG +E L ++ ++ L FE Sbjct: 224 YMQYTIGKRKGFTIKGALTPHYVLKINPKDNTIIVGDKEELATTQVQALNLS-LPQEWFE 282 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFV----QRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 D C VKIR +P + + N + + +++ GVA+GQA V Y + Sbjct: 283 DK--RQIDCEVKIRYKSHKIPAKISLENKNNQNIITAHLKEAAYGVANGQALVLYEGN-- 338 Query: 374 EARVLGGGII 383 +VLGGG I Sbjct: 339 --QVLGGGFI 346 >gi|227488018|ref|ZP_03918334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227542661|ref|ZP_03972710.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium glucuronolyticum ATCC 51866] gi|227092028|gb|EEI27340.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium glucuronolyticum ATCC 51867] gi|227181859|gb|EEI62831.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium glucuronolyticum ATCC 51866] Length = 299 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 114/313 (36%), Positives = 160/313 (51%), Gaps = 21/313 (6%) Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 +CD + + YV+D+ +RF+ VI F SYA GETP PC+ CN +KF LL LG Sbjct: 1 MCDKLGIPFYVWDFSDRFKEDVIDDFVESYAMGETPNPCLRCNEKIKFRALLERGIALGF 60 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + ++G R R +D ++DQSY L T +L FP+G+ +K Sbjct: 61 DAVATGHYAT----IDENGYLR----RSVDPKKDQSYVLGVLTADELAHCYFPVGNTEKP 112 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHN 257 +R+ A G +A K DS DICF+ G + + I + G IV +G L H+ Sbjct: 113 QIREEAARHGFSVAKKPDSYDICFIPDG---NTKAFLGKHIGMRPGVIVDEDGNKLQDHD 169 Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+ YTIGQR+GL + A G P +V +D + V VGPRE L VH I + L Sbjct: 170 GVYGYTIGQRKGLNIRVPAADGRPRYVTDIDAATGTVTVGPREHLAVHTIIADRLKQLHP 229 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 D +C V++R+ + VP D + + ++ GVA GQA V Y D Sbjct: 230 AFNGDV-----ECQVQVRAHGEVVPCSAHIEGDTMTLTLKQPLSGVARGQAAVVYLPDQA 284 Query: 374 EARVLGGGIISGS 386 VLG G I G+ Sbjct: 285 GDIVLGSGTICGT 297 >gi|296135318|ref|YP_003642560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thiomonas intermedia K12] gi|295795440|gb|ADG30230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thiomonas intermedia K12] Length = 368 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 131/378 (34%), Positives = 184/378 (48%), Gaps = 28/378 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV +SGGVDSSV A LLK+ GY V+G+ ++ + S+ C QD DA V D Sbjct: 9 VVVGLSGGVDSSVSAWLLKQQGYTVVGLFMKNWEDDDDSEY---CSTRQDWLDAASVADR 65 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + ++ ++ V F YAAG TP P V CN +KF L +LGAD +A Sbjct: 66 IGIDIEAVNFAAEYKERVFADFLREYAAGRTPNPDVLCNAEIKFKAFLDHAMRLGADRIA 125 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R R D G + R +D +DQSYFL Q QL FP+G++ K VR Sbjct: 126 TGHYARVRET--DHGFE---LLRGLDASKDQSYFLHRLNQAQLARTLFPVGELNKTEVRK 180 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A +GL A K DS ICF+ + + D + R G + G+ +G+H G+ Y Sbjct: 181 VAEAIGLHNARKKDSTGICFIGERPFRDFLSRYLP--TQPGAMKTPEGKTVGQHLGLAFY 238 Query: 263 TIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWL-GD 313 T+GQR+G+G+ + GEP FV D +++IV L H + +W+ G Sbjct: 239 TLGQRKGIGLGGSKSSNGEPWFVAGKDLERNQLIVAQGHDHPLLLSHTLQALSASWVSGT 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 E A G K R Q D F + + + F+ + V GQ+ V Y + Sbjct: 299 APAEGACGYG----AKTRYRQVDAACRFQYQGPERFTLKFDAPQWAVTPGQSAVLYDGEV 354 Query: 373 NEARVLGGGIISGSKRSD 390 LGGGII + R+D Sbjct: 355 ----CLGGGIIEAASRND 368 >gi|42560982|ref|NP_975433.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|81400641|sp|Q6MTG1|MNMA_MYCMS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|42492479|emb|CAE77075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320545|gb|ADK69188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 375 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 123/378 (32%), Positives = 192/378 (50%), Gaps = 27/378 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 +V+V +SGGVDSSV LL GY+V G+ ++ ++S + G+ C QD Sbjct: 4 KVIVGLSGGVDSSVACYLLLEQGYEVEGLFMRNWDSATNNDILGNRNINDDICPQEQDYL 63 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VT 133 DA+ V D +N+ Y D+ + + + V F Y TP P + CN+ +KF L+ Sbjct: 64 DAKAVADKLNIKLYRVDFIKEYWDYVFSYFIEEYKKARTPNPDILCNKYIKFDKFLNYAI 123 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 QL AD +A GHY + + + + + D +DQ+YFL Q+QL FPL Sbjct: 124 NQLNADYIAMGHYAKVEF---NKTTNQYELIKASDTNKDQTYFLSQLNQKQLSKTLFPLA 180 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252 ++ KE VR +A + L A+K DS ICF+ + + + ++ N GDIV + ++ Sbjct: 181 NLTKEQVRKIALKQNLITANKKDSTGICFIGERSFTNFLQ--NYIPNQTGDIVDIKTNKV 238 Query: 253 LGRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLR 306 LG+H G++ YTIGQR+G+ ++ M EP +V DK+ + I+ + L + Sbjct: 239 LGQHIGVMYYTIGQRKGINLSGMSEPYYVA--DKDVKKNILYVCSTSDQSYLHSTSCLVN 296 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQAC 365 +INW+ D ++ F+C K R Q V V++ DD Y V F+K + GQ Sbjct: 297 DINWILDISKYVDDINQFECQAKFRYRQIDNKVVVKKIDDNNYQVIFKKPLKAITIGQQA 356 Query: 366 VFYTSDSNEARVLGGGII 383 VFY +D LGG +I Sbjct: 357 VFYLNDI----CLGGAVI 370 >gi|330428736|gb|AEC20070.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pusillimonas sp. T7-7] Length = 379 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 126/375 (33%), Positives = 183/375 (48%), Gaps = 27/375 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVV+ MSGGVDSSV A LLK GYDV+G+ ++ + S+ C QD DA V D Sbjct: 18 RVVIGMSGGVDSSVAAWLLKEQGYDVLGLFMKNWEDDDDSEY---CSTRQDWLDAASVAD 74 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I V ++ +++ V F Y+AG TP P V CN +KF L LGAD + Sbjct: 75 LIGVDIEAVNFATEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMTLGADYI 134 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R +G + +++ + +DL +DQSYFL Q QL FPLG++ K VR Sbjct: 135 ATGHYARVRSIQTPNGTQHQLL-KALDLSKDQSYFLHRLNQAQLARTLFPLGEIPKTEVR 193 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA+E+ L A K DS ICF+ + + + + R A G I G ++G H G+ Sbjct: 194 RLAQELQLPNAAKKDSTGICFIGERPFREFLNRYLPTHA--GPIKTPEGVVVGEHQGLSF 251 Query: 262 YTIGQRRGLGV----------AMGEPLFVVY--LDKNSSRVIVGP-RESLEVHRIYLREI 308 YT+GQR+GLG+ + + LD N+ V+ G L + ++ Sbjct: 252 YTLGQRKGLGIGGVKGRQRDDGTADAWYTARKDLDSNTLYVVQGHDHPWLLASSLNAQDA 311 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 +W+ E + + R + D V + + + F++ + V GQ+ V Y Sbjct: 312 SWVAGYAPEPG---SYAAKSRYRQA-DAVCALAGVSGNRFSLAFQEEQWAVTPGQSAVLY 367 Query: 369 TSDSNEARVLGGGII 383 D LGGGII Sbjct: 368 DKDV----CLGGGII 378 >gi|205829103|sp|Q1J988|MNMA_STRPB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205829104|sp|Q1JJD5|MNMA_STRPC RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 373 Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 136/371 (36%), Positives = 193/371 (52%), Gaps = 25/371 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V Sbjct: 7 IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 64 DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K V Sbjct: 124 VATGHYAQ----VKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H G++ Sbjct: 180 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLM 237 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YTIGQR GLG+ +P FVV D + + + VG E+L + + I++ Sbjct: 238 YYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTR 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + E F+C K R Q V V D V F + + + GQA VFY D Sbjct: 298 EMPEEFT----FECTAKFRYRQPDSHVTVHVRGDKAEVVFAEPQRAITPGQAVVFY--DG 351 Query: 373 NEARVLGGGII 383 E LGGG+I Sbjct: 352 KEC--LGGGMI 360 >gi|325695737|gb|EGD37636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis SK150] Length = 373 Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 134/379 (35%), Positives = 198/379 (52%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D + M R D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYAQ----VKRDQEGVVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS ICF+ + + + + + A G ++ L G+ +G+H G++ Sbjct: 181 AIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ EP FVV D + + + VG ++L + ++++ + Sbjct: 239 YTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHFTKE 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ C K R Q V V D V+ ++ + V GQA VFY D Sbjct: 299 -MPEEFTME---CTAKFRYRQPDSKVTVAVKGDKAVVNVDQPQRAVTPGQAVVFYDGD-- 352 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I + ++ V Sbjct: 353 --ECLGGGLIDRAYKNGQV 369 >gi|225869459|ref|YP_002745407.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus equi subsp. zooepidemicus] gi|259495839|sp|C0MGQ2|MNMA_STRS7 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|225702735|emb|CAX00880.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus equi subsp. zooepidemicus] Length = 374 Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 137/372 (36%), Positives = 190/372 (51%), Gaps = 29/372 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V D Sbjct: 9 RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 65 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y +G TP P V CN+ +KF L LGAD + Sbjct: 66 QIGIPYYSVNFEKEYWDRVFEYFLAEYRSGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 125 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 126 ATGHYAQ----IKRDENGVVHMLRGFDKGKDQTYFLSQLSQKQLQKTMFPLGHLQKSEVR 181 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + GL A K DS ICF+ + + + A +G ++ ++G+ +G H G++ Sbjct: 182 AIAEQAGLATAKKKDSTGICFIGEKNFKTFLSHYLP--AQKGRMMTVDGRDMGEHAGLMY 239 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ +P FVV D + + + VG ESL + I Sbjct: 240 YTIGQRGGLGIGGQQGGDNKPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASVIQ---- 295 Query: 314 GLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 F V + F +C K R Q V V D V F + + + GQA VFY D Sbjct: 296 --FTREVPEEFTLECTAKFRYRQPDSKVTVHVKKDKAKVVFAEPQRAITPGQAVVFY--D 351 Query: 372 SNEARVLGGGII 383 +E LGGGII Sbjct: 352 GHEC--LGGGII 361 >gi|163789149|ref|ZP_02183592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Flavobacteriales bacterium ALC-1] gi|159875562|gb|EDP69623.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Flavobacteriales bacterium ALC-1] Length = 395 Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 124/405 (30%), Positives = 199/405 (49%), Gaps = 54/405 (13%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V +SGGVDSSV A LLK GY+VIG+ ++ ++ + C +D DA V D Sbjct: 3 RVIVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVTISD-ECPWLEDSNDAMLVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + D +++ ++ + Y G TP P V CNR +KF + + +LGAD + Sbjct: 62 KLGIPFQTVDLSVQYKERIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMDIALELGADYV 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + + DGK + D +DQSYFL +Q QL FP+G++ K VR Sbjct: 122 ATGHYCR-KSTIEKDGKVIHQLLSGADNNKDQSYFLCQLSQAQLAKALFPIGELTKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVK---RINAGIALEGDIVH----------- 247 ++A+ GL A+K DSQ +CF+ + + + ++ + G+ +E D Sbjct: 181 EIAKAQGLITAEKKDSQGLCFIGKVRLPEFLQQQLKPKEGVIVEVDSAFEIFSQSIPDFK 240 Query: 248 -----------------LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSR 289 +G+++G+H G +T GQR+GLGV EPLFV+ D + Sbjct: 241 SKENELEFFSKKPEYAITDGKVVGKHQGAHYFTKGQRKGLGVGGTIEPLFVIDTDVKENI 300 Query: 290 VIVGPRESLEVHRIYLR--------EINWLGDGLFEDAVVDG--FKCFVKIRSSQDPVPV 339 + G ++ H LR E++W+ + L A+ +G + +IR Q Sbjct: 301 IFTGQGKN---HPGLLRNVLFVKNDELHWVREDL---ALAEGDTMQVMARIRYRQALENA 354 Query: 340 FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + + G+YV+FE + + GQ +Y +D +LG G+IS Sbjct: 355 TLHKVASGLYVEFENQQSAITEGQFVAWYLND----ELLGSGVIS 395 >gi|134294775|ref|YP_001118510.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia vietnamiensis G4] gi|205813829|sp|A4JBM2|MNMA_BURVG RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|134137932|gb|ABO53675.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia vietnamiensis G4] Length = 384 Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 128/376 (34%), Positives = 178/376 (47%), Gaps = 32/376 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L L A+++ Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDAEMI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG+M K VR Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEMPKTKVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + D + R G + +G+ +G H G+ Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKRVGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313 YT GQR+G+G+ GEP FV D N+ V+ G L H + ++W+ Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIPSNTLYVVQGHDHPWLLSHELVAGNVSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG------VYVDFEKSEVGVASGQACVF 367 + DGF C K R Q G + F+ ++ V GQ+ V Sbjct: 295 ----EPPADGFACGAKTRYRQADAACRFGAAAAGPAGEARFTLAFDDAQWAVTPGQSAVL 350 Query: 368 YTSDSNEARVLGGGII 383 Y + LGGGII Sbjct: 351 YDGEI----CLGGGII 362 >gi|330827143|ref|YP_004390446.1| tRNA-specific 2-thiouridylase mnmA [Alicycliphilus denitrificans K601] gi|329312515|gb|AEB86930.1| tRNA-specific 2-thiouridylase mnmA [Alicycliphilus denitrificans K601] Length = 373 Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 128/381 (33%), Positives = 190/381 (49%), Gaps = 35/381 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RVVV +SGGVDS+V A LLK+ G++V+G+ ++ + S+ C + QD DA V Sbjct: 7 QRVVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---YCSSRQDFLDAASVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + ++ +++ V F Y AG TP P V CN +KF L +LGA+ Sbjct: 64 DVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAEK 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R + + + +D +DQSYFL Q+QL FP+G+++K V Sbjct: 124 IATGHYARVRH---NPATGLFELLKGLDPAKDQSYFLHRLNQEQLARTLFPVGELRKTEV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGI 259 R +A E+GL A K DS ICF+ + + + + R I+ E G I+ G+ LGRH G+ Sbjct: 181 RRIAEEIGLPNAKKKDSTGICFIGERPFREFLNRY---ISHEPGPILDDRGRRLGRHVGL 237 Query: 260 INYTIGQRRGLGV----------AMGE--PLFVVY--LDKNSSRVIVGP-RESLEVHRIY 304 YT+GQR+GLG+ GE P FV L N+ RV+ G L HR+ Sbjct: 238 SFYTLGQRQGLGIGGVKEKGAQRGGGEHAPWFVARKELATNTLRVVQGHDHPWLLSHRLA 297 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQ 363 ++ +W+ C K R Q V G + + F +++ V GQ Sbjct: 298 AQDASWVAGRPPAPGA-----CAAKTRYRQQDAACTVLAAQGGAFSLQFPEAQWAVTPGQ 352 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + V Y + LGGG+I+ Sbjct: 353 SAVLYDGEV----CLGGGVIA 369 >gi|319764949|ref|YP_004128886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alicycliphilus denitrificans BC] gi|317119510|gb|ADV01999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alicycliphilus denitrificans BC] Length = 373 Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 128/381 (33%), Positives = 190/381 (49%), Gaps = 35/381 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RVVV +SGGVDS+V A LLK+ G++V+G+ ++ + S+ C + QD DA V Sbjct: 7 QRVVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---YCSSRQDFLDAASVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + ++ +++ V F Y AG TP P V CN +KF L +LGA+ Sbjct: 64 DVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAEK 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R + + + +D +DQSYFL Q+QL FP+G+++K V Sbjct: 124 IATGHYARVRH---NPATGLFELLKGLDPAKDQSYFLHRLNQEQLARTLFPVGELRKTEV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGI 259 R +A E+GL A K DS ICF+ + + + + R I+ E G I+ G+ LGRH G+ Sbjct: 181 RRIAEEIGLPNAKKKDSTGICFIGERPFREFLNRY---ISHEPGPILDDRGRRLGRHVGL 237 Query: 260 INYTIGQRRGLGV----------AMGE--PLFVVY--LDKNSSRVIVGP-RESLEVHRIY 304 YT+GQR+GLG+ GE P FV L N+ RV+ G L HR+ Sbjct: 238 SFYTLGQRQGLGIGGVKEKGAQRGGGEHAPWFVARKELATNTLRVVQGHDHPWLLSHRLA 297 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQ 363 ++ +W+ C K R Q V G + + F +++ V GQ Sbjct: 298 AQDASWVAGRPPAPGA-----CAAKTRYRQQDAACTVLAAQGGAFSLQFSEAQWAVTPGQ 352 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + V Y + LGGG+I+ Sbjct: 353 SAVLYDGEV----CLGGGVIA 369 >gi|88703376|ref|ZP_01101092.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Congregibacter litoralis KT71] gi|88702090|gb|EAQ99193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Congregibacter litoralis KT71] Length = 372 Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 120/370 (32%), Positives = 184/370 (49%), Gaps = 26/370 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A +L GYDV G+ ++ ++ ++ C A D DA+ V D Sbjct: 10 KVIVGMSGGVDSSVAALILLEQGYDVEGLFMKNWDEDDGTE---YCTAKVDYADAQAVAD 66 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + ++ + ++ + + V F Y AG TP P + CNR +KF L +LGAD + Sbjct: 67 KLGITLHAANFAAEYWDNVFEHFLDEYRAGRTPNPDILCNREIKFRAFLDYALELGADRI 126 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + G R +C+ +D +DQSYFL A +L FPLG+++K VR Sbjct: 127 ATGHYARRGMRHG-----RPALCKGLDNNKDQSYFLHAVGHAELSKTLFPLGEIEKPEVR 181 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA GL DK DS ICF+ + ++ D +++ A G I L G +G H+G++ Sbjct: 182 ALAERAGLRTHDKKDSTGICFIGERRFKDFLQQYLP--AQPGIIKTLEGDTIGEHSGLMY 239 Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGD 313 +TIGQR+GLG+ P +V D ++ ++V +L ++ + W+ Sbjct: 240 HTIGQRQGLGIGGLARHNEAPWYVAGKDLANNVLLVVQGNDHPALFSQELWTDTLFWIAG 299 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 A C K+R Q V + ++F + + GQ+ V Y D N Sbjct: 300 ----QAPQFPLHCAAKVRYRQADQKCTVFEDGGRYRINFSAPQRAITPGQSVVLY--DGN 353 Query: 374 EARVLGGGII 383 LGGG+I Sbjct: 354 --ICLGGGVI 361 >gi|15675922|ref|NP_270096.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes M1 GAS] gi|71911653|ref|YP_283203.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes MGAS5005] gi|14195262|sp|P58075|MNMA_STRP1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|13623161|gb|AAK34817.1| putative tRNA-(5-methylaminomethyl-2-thiouridylate) [Streptococcus pyogenes M1 GAS] gi|71854435|gb|AAZ52458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pyogenes MGAS5005] Length = 373 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 136/371 (36%), Positives = 193/371 (52%), Gaps = 25/371 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V Sbjct: 7 IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 64 DKIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K V Sbjct: 124 VATGHYAQ----VKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H G++ Sbjct: 180 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLM 237 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YTIGQR GLG+ +P FVV D + + + VG E+L + + I++ Sbjct: 238 YYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTR 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + E F+C K R Q V V D V F + + + GQA VFY D Sbjct: 298 EMPEEFT----FECTAKFRYRQPDSHVAVHVRGDKAEVVFAEPQRAITPGQAVVFY--DG 351 Query: 373 NEARVLGGGII 383 E LGGG+I Sbjct: 352 KEC--LGGGMI 360 >gi|50915203|ref|YP_061175.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes MGAS10394] gi|94995352|ref|YP_603450.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes MGAS10750] gi|50904277|gb|AAT87992.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pyogenes MGAS10394] gi|94548860|gb|ABF38906.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pyogenes MGAS10750] Length = 379 Score = 182 bits (462), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 136/371 (36%), Positives = 193/371 (52%), Gaps = 25/371 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V Sbjct: 13 IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 69 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 70 DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 129 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K V Sbjct: 130 VATGHYAQ----VKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEV 185 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H G++ Sbjct: 186 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLM 243 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YTIGQR GLG+ +P FVV D + + + VG E+L + + I++ Sbjct: 244 YYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTR 303 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + E F+C K R Q V V D V F + + + GQA VFY D Sbjct: 304 EMPEEFT----FECTAKFRYRQPDSQVTVHVRGDKAEVVFAEPQRAITPGQAVVFY--DG 357 Query: 373 NEARVLGGGII 383 E LGGG+I Sbjct: 358 KEC--LGGGMI 366 >gi|205829100|sp|Q48QM8|MNMA_STRPM RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 373 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 136/371 (36%), Positives = 193/371 (52%), Gaps = 25/371 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V Sbjct: 7 IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 64 DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K V Sbjct: 124 VATGHYAQ----VKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H G++ Sbjct: 180 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLM 237 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YTIGQR GLG+ +P FVV D + + + VG E+L + + I++ Sbjct: 238 YYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTR 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + E F+C K R Q V V D V F + + + GQA VFY D Sbjct: 298 EMPEEFT----FECTAKFRYRQPDSHVAVHVRGDKAEVVFAEPQRAITPGQAVVFY--DG 351 Query: 373 NEARVLGGGII 383 E LGGG+I Sbjct: 352 KEC--LGGGMI 360 >gi|19747021|ref|NP_608157.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pyogenes MGAS8232] gi|19749279|gb|AAL98656.1| tRNA-methyltransferase [Streptococcus pyogenes MGAS8232] Length = 379 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 136/371 (36%), Positives = 193/371 (52%), Gaps = 25/371 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V Sbjct: 13 IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 69 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 70 DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLGYAMTLGADY 129 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K V Sbjct: 130 VATGHYAQ----VKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEV 185 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H G++ Sbjct: 186 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLM 243 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YTIGQR GLG+ +P FVV D + + + VG E+L + + I++ Sbjct: 244 YYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTR 303 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + E F+C K R Q V V D V F + + + GQA VFY D Sbjct: 304 EMPEEFT----FECTAKFRYRQPDSQVTVHVRGDKAEVVFAEPQRAITPGQAVVFY--DG 357 Query: 373 NEARVLGGGII 383 E LGGG+I Sbjct: 358 KEC--LGGGMI 366 >gi|254805310|ref|YP_003083531.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis alpha14] gi|254668852|emb|CBA06922.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis alpha14] gi|319410773|emb|CBY91158.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis WUE 2594] gi|325140698|gb|EGC63213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis CU385] Length = 367 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 128/383 (33%), Positives = 190/383 (49%), Gaps = 26/383 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++ NP + ++V +SGGVDSSV AALLK+ GY V GV +Q + + C Q Sbjct: 1 MNTTANPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 55 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 56 DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 115 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 116 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 170 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 171 LGGLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 228 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308 +G H G++ YT+GQR+GLG+ GEP FV L KN V+ G L +Y R + Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 284 Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 N L L E + C + R + P + +D+ + F++ + V GQ+ V Sbjct: 285 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCEL-RYLDDETAELVFDEPQWAVTPGQSAV 343 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 Y D LGGGII + + Sbjct: 344 LYDGDI----CLGGGIIQTTDKP 362 >gi|59801573|ref|YP_208285.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae FA 1090] gi|293399659|ref|ZP_06643811.1| tRNA methyl transferase [Neisseria gonorrhoeae F62] gi|59718468|gb|AAW89873.1| putative tRNA methyltransferase [Neisseria gonorrhoeae FA 1090] gi|291609910|gb|EFF39033.1| tRNA methyl transferase [Neisseria gonorrhoeae F62] Length = 383 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 127/382 (33%), Positives = 188/382 (49%), Gaps = 24/382 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + + C Q Sbjct: 15 LRMNTTSNTSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWENDDNDE---YCSIKQ 71 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 72 DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 131 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GAD +ATGHY R G + + +D +DQSYFL+ QL FP Sbjct: 132 YAVGQGADTIATGHYARKEARNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 186 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 187 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 244 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308 +G H G++ YT+GQR+GLG+ GEP FV L KN V+ G L +Y R + Sbjct: 245 TIGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 300 Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 N L L E + C + R + P + +D+ + F++ + V GQ+ V Sbjct: 301 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCEL-CYLDDETAELVFDEPQWAVTPGQSAV 359 Query: 367 FYTSDSNEARVLGGGIISGSKR 388 Y D LGGGII + + Sbjct: 360 LYDVDI----CLGGGIIQTTDK 377 >gi|78047602|ref|YP_363777.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|123585152|sp|Q3BTY6|MNMA_XANC5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|78036032|emb|CAJ23723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 378 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 126/374 (33%), Positives = 184/374 (49%), Gaps = 28/374 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+V+ +SGGVDSSV A L + G + G+ +Q + A G C A D DA VC Sbjct: 5 RIVLGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + N V F + YAAG TP P V CNR VKF L + LGA+ + Sbjct: 61 VLGIPFHFRDFSGEYWNGVFAHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V G R R++ R D +DQSYFL Q QL FP+GD++K ++R Sbjct: 121 ATGHYAQ----VAHRGGRWRLL-RGADRGKDQSYFLHQLGQAQLAATLFPIGDLEKSTLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A++ GL K DS ICF+ + + + + R A G+I GQ + H G+ Sbjct: 176 RIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARAGEIRDPQGQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINWLGD 313 +T+GQR GL + P +VV D N+ + R+S + +L+ + +W+ Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 F C + R Q P V DDG V V FE+ + V GQ+ V Y + Sbjct: 294 A----PPARRFTCTAQTRYRQPDEPCTVDVQDDGSVQVRFERPQRAVTPGQSLVLYDGEE 349 Query: 373 NEARVLGGGIISGS 386 LGG +I+ + Sbjct: 350 ----CLGGAVIAAT 359 >gi|94989481|ref|YP_597582.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes MGAS9429] gi|94993368|ref|YP_601467.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes MGAS2096] gi|94542989|gb|ABF33038.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pyogenes MGAS9429] gi|94546876|gb|ABF36923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pyogenes MGAS2096] Length = 379 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 136/371 (36%), Positives = 193/371 (52%), Gaps = 25/371 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V Sbjct: 13 IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 69 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 70 DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 129 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K V Sbjct: 130 VATGHYAQ----VKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEV 185 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H G++ Sbjct: 186 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLM 243 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YTIGQR GLG+ +P FVV D + + + VG E+L + + I++ Sbjct: 244 YYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTR 303 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + E F+C K R Q V V D V F + + + GQA VFY D Sbjct: 304 EMPEEFT----FECTAKFRYRQPDSHVTVHVRGDKAEVVFAEPQRAITPGQAVVFY--DG 357 Query: 373 NEARVLGGGII 383 E LGGG+I Sbjct: 358 KEC--LGGGMI 366 >gi|306826439|ref|ZP_07459751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pyogenes ATCC 10782] gi|304431369|gb|EFM34366.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pyogenes ATCC 10782] Length = 378 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 136/371 (36%), Positives = 193/371 (52%), Gaps = 25/371 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V Sbjct: 12 IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 68 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 69 DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 128 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K V Sbjct: 129 VATGHYAQ----VKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEV 184 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H G++ Sbjct: 185 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLM 242 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YTIGQR GLG+ +P FVV D + + + VG E+L + + I++ Sbjct: 243 YYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTR 302 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + E F+C K R Q V V D V F + + + GQA VFY D Sbjct: 303 EMPEEFT----FECTAKFRYRQPDSHVTVHVRGDKAEVVFAEPQRAITPGQAVVFY--DG 356 Query: 373 NEARVLGGGII 383 E LGGG+I Sbjct: 357 KEC--LGGGMI 365 >gi|58582179|ref|YP_201195.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas oryzae pv. oryzae KACC10331] gi|188576740|ref|YP_001913669.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576931|ref|YP_001913860.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas oryzae pv. oryzae PXO99A] gi|75435215|sp|Q5GZR1|MNMA_XANOR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205829009|sp|B2SMD7|MNMA_XANOP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|58426773|gb|AAW75810.1| tRNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|188521192|gb|ACD59137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521383|gb|ACD59328.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 378 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 129/373 (34%), Positives = 186/373 (49%), Gaps = 28/373 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 +VV +SGGVDSSV A L + G + G+ +Q + A G C A D DA VC Sbjct: 6 IVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCGV 61 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + + D+ + + V F + YAAG TP P V CNR VKF L + LGA+ +A Sbjct: 62 LGMPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERIA 121 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + V G R R++ R D ++DQSYFL Q QL FP+GD++K ++R Sbjct: 122 TGHYAQ----VAHRGGRWRLL-RGADRDKDQSYFLHQLGQSQLAATLFPIGDLEKSTLRR 176 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +AR+ GL K DS ICF+ + + + + R A G+I GQ + H G+ + Sbjct: 177 IARDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFYF 234 Query: 263 TIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RESLEVHRIYLR--EINWLGDG 314 T+GQR GL + P +VV D S+ + V R+S + +L+ + +W+ Sbjct: 235 TLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSRWLQSEQAHWVTGA 294 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 F C + R Q P V DDG V V FE+ + V GQ+ V Y D Sbjct: 295 ----PPARRFSCTAQTRYRQPDEPCTVDVQDDGSVQVHFERPQRAVTPGQSLVLY--DGK 348 Query: 374 EARVLGGGIISGS 386 E LGG +I+ + Sbjct: 349 E--CLGGAVIAAT 359 >gi|323142835|ref|ZP_08077547.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Succinatimonas hippei YIT 12066] gi|322417377|gb|EFY07999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Succinatimonas hippei YIT 12066] Length = 374 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 120/369 (32%), Positives = 186/369 (50%), Gaps = 21/369 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV+ +SGGVDSS+ AALLK +G V + ++ + C A D DA++VCD Sbjct: 16 HVVIGLSGGVDSSLSAALLKENGMKVTALFMKNWEEDDTDT---VCAAAADREDAQKVCD 72 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140 + + ++ + + V F S Y AG TP P + CN+ +KF L AD Sbjct: 73 KLGIELKTINFAAEYWDRVFENFLSEYQAGRTPNPDILCNKEIKFKAFFDYALTDLHADF 132 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + +D ++ R +D +DQ+YFL A L + FP+G ++K V Sbjct: 133 IATGHYAQRSF---NDPLAAHLL-RSVDKNKDQTYFLHAIGPNVLHKVLFPVGAIEKPQV 188 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A K DS ICF+ + ++ + ++ A G I+ ++GQ +G H+G++ Sbjct: 189 RLMAEERGLVTARKKDSTGICFIGEKRFHEFLQHYLP--AHSGPIITVDGQTVGEHDGLM 246 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 TIGQR+GL + GEP +VV D ++ +I+ + +Y + + + Sbjct: 247 FATIGQRKGLHIGGSKDGSGEPWYVVDKDIKNNALIIAQGHNHPA--LYSKGLMAQNETW 304 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 +A FKC KIR Q V V R ++ + V F+ VA GQ+ VFY + Sbjct: 305 LVEAPQMPFKCTCKIRYRQPDVNCTVYRENNELKVLFDNKVAAVAPGQSVVFYQG----S 360 Query: 376 RVLGGGIIS 384 LGG II+ Sbjct: 361 ECLGGAIIN 369 >gi|313889493|ref|ZP_07823139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pseudoporcinus SPIN 20026] gi|313122105|gb|EFR45198.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pseudoporcinus SPIN 20026] Length = 373 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 137/370 (37%), Positives = 194/370 (52%), Gaps = 25/370 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALNLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D R M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYAQ----VERDSDGRVHMLRGVDNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSQVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A L A K DS ICF+ + + + + A +G + ++G+ +G H G++ Sbjct: 181 EIAARADLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMKTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ +P FVV D + + + VG ESL + +++ D Sbjct: 239 YTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNVLYVGQGFYHESLMSTSLDASMVHFTHD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 E + +C K R Q V V+ + D V F + + + GQA VFY D+ Sbjct: 299 MPKEFTL----ECTAKFRYRQPDCKVSVKVSGDKAKVLFAEPQRAITPGQAVVFY--DNQ 352 Query: 374 EARVLGGGII 383 E LGGGII Sbjct: 353 EC--LGGGII 360 >gi|71904534|ref|YP_281337.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes MGAS6180] gi|71803629|gb|AAX72982.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pyogenes MGAS6180] Length = 379 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 136/371 (36%), Positives = 195/371 (52%), Gaps = 25/371 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V Sbjct: 13 IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 69 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 70 DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 129 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K V Sbjct: 130 VATGHYAQ----VKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEV 185 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H G++ Sbjct: 186 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLM 243 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YTIGQR GLG+ +P FVV D + + + VG E+L + + I++ Sbjct: 244 YYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTR 303 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + + E+ F+C K R Q V V D V F + + + GQA VFY D Sbjct: 304 E-MPEEFT---FECTAKFRYRQPDSHVAVHVRGDKAEVVFAEPQRAITPGQAVVFY--DG 357 Query: 373 NEARVLGGGII 383 E LGGG+I Sbjct: 358 KEC--LGGGMI 366 >gi|94311890|ref|YP_585100.1| tRNA-specific 2-thiouridylase MnmA [Cupriavidus metallidurans CH34] gi|205816893|sp|Q1LJ45|MNMA_RALME RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|93355742|gb|ABF09831.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cupriavidus metallidurans CH34] Length = 359 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 125/371 (33%), Positives = 179/371 (48%), Gaps = 26/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDSSV A LLK+ GY+VIG+ ++ + S+ C QD D V D Sbjct: 5 RVVVGLSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSEY---CSTRQDWLDVASVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I V ++ +++ V F Y+AG TP P V CN +KF L LGA+ + Sbjct: 62 VIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGANTI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R +GK + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRQAA--NGKFE--LLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKTRVR 177 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A E+GL A K DS ICF+ + + D + R G + G+++G H G+ Sbjct: 178 EIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TQPGPMKTPEGKVVGEHIGLAF 235 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGD 313 YT+GQR+G+G+ G+ +V D S+ + V L + +++W+ Sbjct: 236 YTLGQRKGIGLGGSRDGSGDAWYVARKDMASNTLYVVQGHDHPWLLTSELNAADLSWVAG 295 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + G K R Q P V D + + F + + V GQ+ V Y D Sbjct: 296 ----EPPAAGATMAAKTRYRQSDAPCRVVAAEGDALKLSFAEPQWAVTPGQSAVLYDGDV 351 Query: 373 NEARVLGGGII 383 LGGGII Sbjct: 352 ----CLGGGII 358 >gi|325142740|gb|EGC65116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis 961-5945] gi|325198666|gb|ADY94122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis G2136] gi|325201768|gb|ADY97222.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis M01-240149] gi|325208488|gb|ADZ03940.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis NZ-05/33] Length = 367 Score = 182 bits (462), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 128/383 (33%), Positives = 188/383 (49%), Gaps = 26/383 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++ NP + ++V +SGGVDSSV AALLK+ GY V GV +Q + + C Q Sbjct: 1 MNTTANPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 55 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 56 DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 115 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 116 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 170 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 171 LGGLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 228 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308 +G H G++ YT+GQR+GLG+ GEP FV L KN V+ G L +Y R + Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 284 Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 N L L E + C + R + P + + V F++ + V GQ+ V Sbjct: 285 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCELRYLDEETAELV-FDEPQWAVTPGQSAV 343 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 Y D LGGGII + + Sbjct: 344 LYEGDV----CLGGGIIQSTDKP 362 >gi|295096181|emb|CBK85271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 370 Score = 182 bits (462), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 123/375 (32%), Positives = 199/375 (53%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 125 IATGHYVRRA-----DVNGKSQLLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGELEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ + + R A G IV ++G +G+H G++ Sbjct: 180 RKIAEDLDLITAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIVTVDGDEIGQHQGLM 237 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ +P +VV D ++ ++V PR L + ++++W Sbjct: 238 YHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILVVAQGHDHPR--LMSVGLIAQQLHW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + + + +C VK R Q +P V DD + V F++ V GQ+ VFY+ Sbjct: 296 VD----REPLKGTLRCTVKTRYRQTDIPCTVTALYDDRIDVRFDEPVSAVTPGQSAVFYS 351 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 GEI----CLGGGIIE 362 >gi|315927736|gb|EFV07063.1| Putative tRNA-5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 269 Score = 182 bits (462), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 99/288 (34%), Positives = 162/288 (56%), Gaps = 22/288 (7%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDS+V A LK G++VIG ++L+ + +++ +V + + + Sbjct: 1 MSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVANFLQIP 52 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 +++ D +E F+N V +PF +Y G+TP PC CNR +K LL + LG + LATGHY Sbjct: 53 YHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHY 112 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR- 205 R ++ +D +DQSYFL + ++ L L FPLG+MKKE V+ A Sbjct: 113 ARL---------ENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFAST 163 Query: 206 -EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI 264 E+ A + +S +ICFV+ Y V+ + + G+++ +G+++G+H G ++YTI Sbjct: 164 IEVLKSFATQKESSEICFVEDT-YVQVLDQF-MDTKIPGEVLDSSGKVVGKHEGYMHYTI 221 Query: 265 GQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 G+RRG V EP FV+ ++ +++IVG +E L++ L+ IN L Sbjct: 222 GKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLL 269 >gi|269468097|gb|EEZ79807.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [uncultured SUP05 cluster bacterium] Length = 367 Score = 182 bits (462), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 121/377 (32%), Positives = 184/377 (48%), Gaps = 35/377 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ +++V +SGGVDSSV A LL GYDV + ++ + + + C A QD+ DA++ Sbjct: 8 KNNKIIVGLSGGVDSSVAALLLLEQGYDVEALFMKNWEEDDSEEH---CSAEQDLSDAQK 64 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D +++ + ++ + + V F + G TP P V CN+ +KF L LGA Sbjct: 65 VADKLSIKLHTINFSADYWDDVFDHFLKEHKKGRTPNPDVLCNQKIKFKVFLEHAILLGA 124 Query: 139 DVLATGHYIR----SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 D +ATGHY R +Y G +D +DQSYFL QQQL + FPLG+ Sbjct: 125 DKIATGHYARIVEKDNVYSLKTG---------LDNAKDQSYFLHLLNQQQLSNSLFPLGE 175 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 + K VR++A E ADK DS ICF+ + + ++ GD+V +G+ + Sbjct: 176 IDKSKVREIATEHNFITADKKDSTGICFIGERNFSQFLQTYLP--KQPGDVVDQDGKFIK 233 Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLRE 307 H+G+ YT+GQR+GL + GEP FV +D N V+ G L + + Sbjct: 234 HHDGLAFYTMGQRKGLEIGGGFGQSGEPWFVADKCIDSNELIVVQGDHPLLYHNTLNASS 293 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACV 366 +W+ + C KIR Q VQ + + + FE+ + + GQ+ V Sbjct: 294 AHWIN-----NPPKLPLTCTAKIRYRQQSQSCTIVQEENKHLKIVFEQPQRAITPGQSIV 348 Query: 367 FYTSDSNEARVLGGGII 383 FY +D LGG II Sbjct: 349 FYDNDV----CLGGAII 361 >gi|312879199|ref|ZP_07738999.1| tRNA methyl transferase [Aminomonas paucivorans DSM 12260] gi|310782490|gb|EFQ22888.1| tRNA methyl transferase [Aminomonas paucivorans DSM 12260] Length = 352 Score = 182 bits (462), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 133/363 (36%), Positives = 182/363 (50%), Gaps = 26/363 (7%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83 ++ SGGVDS A LL+R+GY G G ARR + + Sbjct: 7 LLLASGGVDSCAAAVLLRREGYLP--------TLVTLLLLPGDTPEGPGPGRARRAAERL 58 Query: 84 NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF-SDLLSVTRQLGADV-L 141 ++ H + D E F V+ PF +Y G TP PC DCN +KF + L + LGADV + Sbjct: 59 DLPHRILDLREPFAREVVAPFREAYLRGRTPNPCADCNGRIKFRAALAAAETLLGADVPV 118 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R G R + R D +RDQSYFL L L FPLGD+ KE R Sbjct: 119 ATGHYARILREGG-----RATLARGRDGKRDQSYFLAGLPSSLLSRLLFPLGDLSKEDAR 173 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LARE GL+ A+ DS ++CFV G Y K + EG +V +G++LG H G+ N Sbjct: 174 RLAREAGLEAAETPDSMELCFVPGGDY---RKLLGPEAFREGPVVDPSGRVLGTHEGVGN 230 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 +T GQR+GLGV+ EPL+V +D +RV V RE+L H + +N L +A+ Sbjct: 231 FTRGQRKGLGVSSPEPLYVREVDGGRNRVTVDRREALLTHLVRGGGVNV----LIPEALR 286 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 K F K+RS +P P ++ D + V F + + A GQ V Y + RV+ G Sbjct: 287 GKTKLFGKVRSQGEPGPCSLESWDGAFLTVRFHQPQFAPAPGQRLVLY---DGQGRVVAG 343 Query: 381 GII 383 + Sbjct: 344 STL 346 >gi|326575288|gb|EGE25216.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis CO72] Length = 392 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 134/389 (34%), Positives = 205/389 (52%), Gaps = 34/389 (8%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K KD++V+V MSGGVDSSV A LL++ G+ V G+ ++ + S+ C A D+ D Sbjct: 15 KALKDIKVIVGMSGGVDSSVSAVLLQQVGFHVEGLFMKNWEEDDGSEY---CTAMTDLAD 71 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ V D I + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 72 AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131 Query: 136 ----LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R DGK + + R +D +DQSYFL A ++ FP Sbjct: 132 SQFGLGADFIATGHYARRGF--SQDGKAQ--LLRGLDTNKDQSYFLHAVGGDKIAKTLFP 187 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 +G+++K VR +A++ L A+K DS ICF+ + K+ D +++ A +GDI +G Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 +G H+G++ YTIGQR G+G+ EP FV++ D ++R+IVG L+ + Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSTEL 305 Query: 304 YLREINWLGDGLFEDAVV---DGFKCFVKIR---SSQDPVPVFVQRNDDGVYVDFEKSEV 357 +++W G+ + GF+C K R S QD + D V V F ++ Sbjct: 306 TAYKLDW---GIAPPVQIFGEQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFGDAQR 362 Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGS 386 V GQ+ VFY D LGGG+I G+ Sbjct: 363 AVTQGQSVVFYDGDI----CLGGGVIDGT 387 >gi|329909731|ref|ZP_08275115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oxalobacteraceae bacterium IMCC9480] gi|327546403|gb|EGF31411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oxalobacteraceae bacterium IMCC9480] Length = 369 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 127/378 (33%), Positives = 185/378 (48%), Gaps = 28/378 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV+ +SGGVDSSV AALLK GY+VIG+ ++ + ++ C QD DA V D Sbjct: 5 KVVIGLSGGVDSSVSAALLKEQGYEVIGLFMKNWEDDDDAEY---CSTRQDWIDAVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + ++ +++ V F Y AG TP P V CN +KF L LGAD++ Sbjct: 62 VLGIDIEAVNFSAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMHLGADLI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R D G R + + +D +DQSYFL Q QL FPLG+++K VR Sbjct: 122 ATGHYARVRESASDAG--RFELLKAIDHTKDQSYFLHRLNQAQLSKTLFPLGEIRKTEVR 179 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A ++GL A K DS ICF+ + + + + R + G + G +G H G+ Sbjct: 180 KMAEQLGLPNAAKKDSTGICFIGERPFREFLNRYLS--YQPGPMKTPEGDTIGEHVGLSF 237 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKN-SSRVIVGPRESLEVHRIYL---REINWLGDGLFE 317 YT+GQR+G+G+ + + N SS R+ + + +Y+ + WL E Sbjct: 238 YTLGQRKGIGIGG----IKAHQNANGSSDAWYVARKDIASNTLYVVQGHDHPWLLSASLE 293 Query: 318 --------DAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368 A D + K R Q VP V D + + F+ S+ V GQ+ V Y Sbjct: 294 ADQLSWIAGAPPDDGQLSAKTRYRQADVPCHVGMVDAQRLQLAFDASQWAVTPGQSAVLY 353 Query: 369 TSDSNEARVLGGGIISGS 386 D LGGGII+ S Sbjct: 354 RGDV----CLGGGIIASS 367 >gi|71658016|sp|Q5F7G4|MNMA_NEIG1 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 367 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 126/371 (33%), Positives = 185/371 (49%), Gaps = 24/371 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++V +SGGVDSSV AALLK+ GY V GV +Q + + + C QD +DA V D Sbjct: 10 IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWENDDNDEY---CSIKQDSFDAIAVADI 66 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + + ++ ++++ V F Y+AG TP P V CN +KF L GAD +A Sbjct: 67 VGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYAVGQGADTIA 126 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R G + + +D +DQSYFL+ QL FPLG ++K VR Sbjct: 127 TGHYARKEARNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLGGLEKPEVRR 181 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA E L A K DS ICF+ + + + +++ G +V G+ +G H G++ Y Sbjct: 182 LAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGKTIGEHVGLMFY 239 Query: 263 TIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI--NWLGDGLFE 317 T+GQR+GLG+ GEP FV L KN V+ G L +Y R + N L L E Sbjct: 240 TLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSLVMNDLSFTLPE 295 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + C + R + P + +D+ + F++ + V GQ+ V Y D Sbjct: 296 RPKAGRYTCKTRYRMADAPCEL-CYLDDETAELVFDEPQWAVTPGQSAVLYDVDI----C 350 Query: 378 LGGGIISGSKR 388 LGGGII + + Sbjct: 351 LGGGIIQTTDK 361 >gi|237714361|ref|ZP_04544842.1| conserved hypothetical protein [Bacteroides sp. D1] gi|229445525|gb|EEO51316.1| conserved hypothetical protein [Bacteroides sp. D1] Length = 353 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 123/382 (32%), Positives = 188/382 (49%), Gaps = 59/382 (15%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83 +V MSGG+DS+ +L+ GY+++GVT++++ G + DAR + + + Sbjct: 1 MVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARELAERM 46 Query: 84 NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143 + HYV D F+ ++ F Y G TP PCV CN KF L +L +AT Sbjct: 47 GIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNCAWVAT 106 Query: 144 GHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GHY R +Y+ GDD K +DQSYFL+ Q L FPLGD Sbjct: 107 GHYSRLEEKNGNIYIVAGDDDK------------KDQSYFLWRLGQDVLKRCIFPLGDYT 154 Query: 197 KESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252 K VR+ E G + K +S ++CF+ +G Y D ++ + E G V+ G Sbjct: 155 KVKVREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDSEIGSGWFVNSEGVK 213 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 LG+H G YTIGQR+GL +A+G+P +V+ ++ + V++G + LE + Sbjct: 214 LGKHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLETEYMLAE------ 267 Query: 313 DGLFEDAVVDGFKCF------VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365 +D +VD + F V+IR P+P V+R +DG + V F ++ +A GQ+ Sbjct: 268 ----QDKIVDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAIAPGQSA 323 Query: 366 VFYTSDSNEARVLGGGIISGSK 387 VFY RVLGG I+ + Sbjct: 324 VFYDG----RRVLGGAFIASQR 341 >gi|327467648|gb|EGF13145.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis SK330] Length = 373 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 134/379 (35%), Positives = 194/379 (51%), Gaps = 25/379 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWERVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYAQ----VKRDQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS ICF+ + + + + + A G ++ L G+ +G+H G++ Sbjct: 181 AIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ EP FVV D + + + VG ++L + ++++ + Sbjct: 239 YTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHFTKE 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ C K R Q V V D V F + + + GQA VFY + Sbjct: 299 -MPEEFTME---CTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFYDGE-- 352 Query: 374 EARVLGGGIISGSKRSDAV 392 LGGG+I + R V Sbjct: 353 --ECLGGGLIDNAYRDGKV 369 >gi|198274479|ref|ZP_03207011.1| hypothetical protein BACPLE_00627 [Bacteroides plebeius DSM 17135] gi|198272681|gb|EDY96950.1| hypothetical protein BACPLE_00627 [Bacteroides plebeius DSM 17135] Length = 349 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 124/369 (33%), Positives = 187/369 (50%), Gaps = 25/369 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V++ MSGG DSSV A LL+ GY+V G+T + Y ++ G+ + + DAR Sbjct: 3 ENNKVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFY------EKDGNI---EYLDDARD 53 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 +C T+ + H ++D E F+ +I F Y AG TP+PC CN +K+ L V + G Sbjct: 54 LCRTLGIPHLIYDAREMFQEKIIRYFIQEYMAGRTPVPCTLCNNYLKWPLLQQVADEKGI 113 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 LATGHY+ + G I C D ++DQS+FL+ Q L + P+G + K Sbjct: 114 YHLATGHYVNKQKIDG----YWYITCGN-DADKDQSFFLWGLPQSILERMCLPMGGLTKT 168 Query: 199 SVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR++A G L A K DS +CF + + G G+ GQ +G+H Sbjct: 169 RVREIAAARGFLKAAKKRDSLGVCFCPMDYRTFLKTHVPEGEISPGNFYDEQGQKIGKHE 228 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG-PRESLEVHRIYLREINWLGDGLF 316 G YTIGQRRGLG+ + + LFV + ++VI+ ++LE + +YL N + Sbjct: 229 GYPFYTIGQRRGLGIHLNKALFVKEIIPQENKVIISDSLQALEKNEMYLTHWNLIN---- 284 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375 D V+ VKIR + V DD +++ + +ASGQA FY ++ Sbjct: 285 PDVVLGHEDVIVKIRYRKQANRCTVTLLDDQRLHIQLHEPLASIASGQAAAFYRDNT--- 341 Query: 376 RVLGGGIIS 384 VLGGGII Sbjct: 342 -VLGGGIIE 349 >gi|261415273|ref|YP_003248956.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371729|gb|ACX74474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327007|gb|ADL26208.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 355 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 124/364 (34%), Positives = 187/364 (51%), Gaps = 16/364 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV V MSGGVDSSV A LL++ GY+V+GVTL++ ++ + V A+ + + Sbjct: 5 RVAVGMSGGVDSSVAALLLQQQGYEVVGVTLRVLPDVDSAFDVEN---DPSVVRAKMIAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H+V + + F V+ + ++ TP PC CNR +KF ++ + LGA+ L Sbjct: 62 KLGIEHHVANCSDAFTGEVLKRCHADFSHARTPNPCCYCNRFIKFGWMMDYAKSLGAEFL 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R +G RR + R D +DQSYFLF ++ + PLG K VR Sbjct: 122 ATGHYVRIEEV---NGVRR--LLRGRDPGKDQSYFLFWVPDERRNHVLTPLGTYVKSEVR 176 Query: 202 DLAREMGLDIADKSDSQDICF-VQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 ++A + G A DSQDICF + +Y + +K + G V G++ H+G Sbjct: 177 EIAAQNGFVNAKTGDSQDICFDIYGSQYTEFLKDRFGEMTRPGRFVDEKGKVWNTHDGFH 236 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV-GPRESLEVHRIYLREINWLGDGLFEDA 319 YT+GQR+GLGVA+G P FV ++D + ++V G + S+ R+ + W G G+ E Sbjct: 237 KYTVGQRKGLGVAIGVPAFVKHVDPETGDILVTGDKSSVCFDRVEMVNCEWHG-GVREVG 295 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + V+ R V + + V V F++ V GQ VFY D VLG Sbjct: 296 TTFRAEGMVRYRQRAVGCEVTIVDTNKAVAV-FDEPLFAVTPGQCAVFYDGDM----VLG 350 Query: 380 GGII 383 GG I Sbjct: 351 GGQI 354 >gi|78065260|ref|YP_368029.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia sp. 383] gi|123569299|sp|Q39JI1|MNMA_BURS3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|77966005|gb|ABB07385.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia sp. 383] Length = 383 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 127/383 (33%), Positives = 182/383 (47%), Gaps = 40/383 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L L A+++ Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDAEMI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRERDG-----RFELLKAYDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + D + R G + +G+I+G H G+ Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKIVGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGD 313 YT GQR+G+G+ G+P FV D N+ V+ G + R + ++W+ Sbjct: 235 YTFGQRKGIGLGGSKSGNGDPWFVAAKDIASNTLYVVQGHDHPWLLARELVAGNVSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQ----------DPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 + +GF C K R Q P P R + F+ ++ V GQ Sbjct: 295 ----EPPAEGFACGAKTRYRQADAACAFGAATPGPAGEAR----FSLAFDDAQWAVTPGQ 346 Query: 364 ACVFYTSDSNEARVLGGGIISGS 386 + V Y + LGGGII + Sbjct: 347 SAVLYDGEI----CLGGGIIESA 365 >gi|309775351|ref|ZP_07670356.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erysipelotrichaceae bacterium 3_1_53] gi|308916868|gb|EFP62603.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erysipelotrichaceae bacterium 3_1_53] Length = 386 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 129/376 (34%), Positives = 194/376 (51%), Gaps = 29/376 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 +V++ +SGGVDS+V A LLK GYDV ++ ++S + G+ C QD Sbjct: 4 KVLLGLSGGVDSAVAAYLLKEQGYDVTCAFMRNWDSFANNDIMGNPTIQDDVCPQEQDYL 63 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ V D + + D+ + + + V F Y G TP P + CN+ +KF ++ R Sbjct: 64 DAKEVADRLGLPLLRVDFVKEYWDHVFTYFLDEYRKGRTPNPDILCNKYIKFDAFMNYAR 123 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 +LG DVLATGHY + V GK R M R D +DQ+YFL +Q L FP+G Sbjct: 124 KLGFDVLATGHYAQ----VDHSGKESR-MLRGADSNKDQTYFLCQVSQDALRHSMFPIGH 178 Query: 195 MKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QI 252 M+K VR++A M L+ ++ K DS ICF+ + + + +K N + +GDI+ + + Sbjct: 179 MEKHEVREIAERMELNSVSKKKDSTGICFIGERNFKEFLK--NYLPSQDGDIMDIETLET 236 Query: 253 LGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLD--KNSSRVIVGPR-ESLEVHRIYLREI 308 +GRH G++ YTIGQR+GLG+ P FVV D KN V G + L + + Sbjct: 237 IGRHGGVLYYTIGQRKGLGIGGNRGPWFVVGKDVQKNILYVTNGSESDWLYSDSCIVSGV 296 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVF 367 NW + + +V C K R Q V ++ D+ VYV + + V +GQ VF Sbjct: 297 NWFSENKPQGELV----CTAKFRYRQPDNDVILRFIDNTTVYVRYPQLVSSVTAGQEAVF 352 Query: 368 YTSDSNEARVLGGGII 383 Y ++ LGGG+I Sbjct: 353 YQNEE----CLGGGVI 364 >gi|289644236|ref|ZP_06476325.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Frankia symbiont of Datisca glomerata] gi|289505959|gb|EFD26969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Frankia symbiont of Datisca glomerata] Length = 351 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 140/371 (37%), Positives = 188/371 (50%), Gaps = 33/371 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV GV L L S S R G+ CC +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVDAGHDVTGVHLALSKSPD-SHRTGARGCCTVEDARDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D +RF + VI F ++Y AG TP PCV CN +KF+ +L LG Sbjct: 60 AADVLGIPFYVWDLADRFEHDVIDEFVAAYEAGRTPNPCVRCNERIKFAAVLERALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGH+ + V + R +D +DQSY L QL FPLGD K Sbjct: 120 DAVVTGHHAQLSGAV---------LRRSVDPGKDQSYVLGTLRPDQLAHAIFPLGDTTKT 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIV-HLNGQILGRH 256 VR A GL +ADK DS DICF+ G D + + + + G +V G+ L H Sbjct: 171 EVRAEAARRGLAVADKPDSHDICFIADG---DTGRWLRDRLGTQPGPVVDAATGETLAEH 227 Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G +TIGQRRGL + G P +V+ + + V VGP E+L+V + W Sbjct: 228 DGAFAFTIGQRRGLRLGRPAPDGRPRYVLDISPVTRTVTVGPAEALDVSHLVADRAVW-- 285 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 +E VV C ++R+ VP + D + V ++ G A GQA V Y D Sbjct: 286 --PYEGPVV----CAAQVRAHGRAVPAIAEGVGDELRVTLDEPLRGTAPGQAVVLYDGD- 338 Query: 373 NEARVLGGGII 383 RVLGGG + Sbjct: 339 ---RVLGGGHV 346 >gi|118602730|ref|YP_903945.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|166235080|sp|A1AX17|MNMA_RUTMC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|118567669|gb|ABL02474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 363 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 117/373 (31%), Positives = 186/373 (49%), Gaps = 27/373 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ +++V +SGGVDSSV LL + GY V + ++ + + + G C QD+ DA++ Sbjct: 6 KNTKIIVGLSGGVDSSVATLLLLKQGYQVEALFMKNW---EEDDKSGYCSVEQDLSDAQK 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + D ++V + ++ + N V + F + G TP P V CN+ +KF L LGA Sbjct: 63 IADKLDVKLHAVNFSADYWNDVFIHFLKEHKKGRTPNPDVLCNQKIKFRVFLEHALSLGA 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R + + ++ +D +DQSYFL Q QL FPLG++ K Sbjct: 123 DKIATGHYAR----IAEKNGTYQLKT-GLDDSKDQSYFLHLLNQYQLSKSLFPLGEINKI 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A E G A+K DS ICF+ + + + + + +GDIV GQ + H G Sbjct: 178 DVRNIAIENGFVTANKKDSTGICFIGERNFSEFLATYLS--KQQGDIVDEQGQFIKHHQG 235 Query: 259 IINYTIGQRRGLGVA-----MGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLREINWL 311 + YTIGQR+GL + GEP FV +++N ++ G L + + +W+ Sbjct: 236 LAFYTIGQRKGLKIGGGFGKSGEPWFVADKCIERNELMIVQGNHALLYHQILSASKPHWI 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 C KIR Q + +ND+ + V F++ + + GQ+ VFY + Sbjct: 296 -----STPPTLPLMCSAKIRYRQQSQSCMISQNDNKQIKVVFKQLQRAITPGQSIVFYDN 350 Query: 371 DSNEARVLGGGII 383 + LGG II Sbjct: 351 KT----CLGGAII 359 >gi|305667726|ref|YP_003864013.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Maribacter sp. HTCC2170] gi|88709776|gb|EAR02009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Maribacter sp. HTCC2170] Length = 396 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 124/400 (31%), Positives = 195/400 (48%), Gaps = 43/400 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV+ +SGGVDSSV A LLK GY+VIG+ ++ ++ + + C +D DA V + Sbjct: 3 KVVIGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVTISE-ECPWLEDSNDALIVAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + D ++ ++ + Y G TP P V CNR +KF L + QLGAD + Sbjct: 62 KLGIPFQTVDLSVEYKERIVDYMFNEYERGRTPNPDVLCNREIKFDVFLKIALQLGADYV 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R V D G+ + D +DQSYFL +Q+QL FP+G++ K VR Sbjct: 122 ATGHYCRKGTLVNDKGEETFQLLSGKDDNKDQSYFLCQLSQEQLSKTLFPIGNLTKPEVR 181 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVK---RINAGIALE---------------- 242 +A + L ADK DSQ +CF+ + + + ++ + G+ +E Sbjct: 182 QIAADNALITADKKDSQGLCFIGKVRLPEFLQQKLKPKKGVIVEVPSTIEEYQHQVPSFS 241 Query: 243 ------------GDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSR 289 V +G+I+G H G +T GQR+GL V EPLFV+ D + + Sbjct: 242 NKEEELSFYSQKPKYVITDGKIVGEHQGAHYFTKGQRKGLDVGGTKEPLFVIDTDVDENV 301 Query: 290 VIVGPRESLE-VHRIYL----REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN 344 + G +S ++R L E++W+ L V + + +IR Q + + Sbjct: 302 IYTGQGKSHPGLYRRTLFVTNAELHWVRSDL-ALKVDESMEVMARIRYRQALQKATIYKI 360 Query: 345 DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 D G+YVDFE+ + + GQ +Y D ++G G+IS Sbjct: 361 DSGLYVDFEEKQSAITEGQFVAWYLDD----ELIGSGVIS 396 >gi|326336750|ref|ZP_08202918.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691220|gb|EGD33191.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 396 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 127/409 (31%), Positives = 204/409 (49%), Gaps = 63/409 (15%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDSSV A LL+R+GY+VIG+ ++ ++ + C +D DA V + Sbjct: 3 RVVVGLSGGVDSSVAAYLLQREGYEVIGIFMKNWHDDSVTI-SNECPWLEDSNDALMVAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + D E ++ ++ Y G TP P V CNR +KF+ L + LGAD + Sbjct: 62 KLGIPFQTVDMSEPYKQRIVDYMFREYERGRTPNPDVLCNREIKFATFLELALNLGADYV 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + +G++ + D +DQSYFL +QQQL FP+G+++K VR Sbjct: 122 ATGHYCRKE-EIEVNGQKIYRLLTGKDNNKDQSYFLCQLSQQQLEKALFPIGNLQKSEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------- 248 +A+++ L A+K DSQ +CFV + + + +++ A EG+I+ + Sbjct: 181 TIAKQLDLVTAEKKDSQGLCFVGKVRLPEFLQQQLA--PKEGNIIEIPASWQGYQNKIPP 238 Query: 249 ---------------------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKN 286 +G+I+G+H G +TIGQR+GL V EPLFV+ + Sbjct: 239 VFKSYEDELHYYAKKYNYQPTDGKIVGKHEGAHFFTIGQRKGLHVGGTVEPLFVIETNTQ 298 Query: 287 SSRVIVGP--------RESLEVHRIYLREINWLGDGL----FEDAVVDGFKCFVKIRSSQ 334 ++ + VG R +L V + +++W+ L F+ VD V+IR Q Sbjct: 299 NNIIYVGQGSKHPGLFRRALFVKK---EDVHWIRPDLALSPFQSMKVD-----VRIRYRQ 350 Query: 335 DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 + + G+Y+DF + + + SGQ V+Y E ++G G I Sbjct: 351 PLQKAHLYLTNKGLYIDFIQPQSAITSGQFAVWYI----EEELIGSGEI 395 >gi|313665411|ref|YP_004047282.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma leachii PG50] gi|312949863|gb|ADR24459.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma leachii PG50] Length = 375 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 123/378 (32%), Positives = 193/378 (51%), Gaps = 27/378 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 +VVV +SGGVDSSV LL + GY+V G+ ++ ++S + G+ C QD Sbjct: 4 KVVVGLSGGVDSSVACYLLLQQGYEVEGLFMRNWDSATNNDILGNANINNDICPQEQDYL 63 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VT 133 DA+ V D +N+ + D+ + + + V F Y TP P + CN+ +KF L+ Sbjct: 64 DAKAVADKLNIKLHRVDFIKEYWDYVFSYFIEEYKKARTPNPDILCNKYIKFDKFLNYAI 123 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 QL AD +A GHY + + + + + D +DQ+YFL Q+QL FPL Sbjct: 124 NQLNADYIAMGHYAKVEF---NKTTNQYELIKASDTNKDQTYFLSQLNQKQLSKTLFPLA 180 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252 ++ KE VR +A + L A+K DS ICF+ + + + ++ N GDIV + ++ Sbjct: 181 NLTKEQVRKIALKQNLITANKKDSTGICFIGERSFTNFLQ--NYIPNQTGDIVDIKTNKV 238 Query: 253 LGRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIV-----GPRESLEVHRIYLR 306 LG+H G++ YTIGQR+G+ ++ M EP +V DK+ + I+ + L + Sbjct: 239 LGQHIGVMYYTIGQRKGINLSGMSEPYYVA--DKDVKKNILYVCSTSDQSYLHSTSCLVN 296 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQAC 365 +INW+ D ++ F+C K R Q V V++ DD Y V F+K + GQ Sbjct: 297 DINWILDVSKYVDDINQFECQAKFRYRQIDNKVVVKKIDDNNYQVIFKKPLKAITIGQQA 356 Query: 366 VFYTSDSNEARVLGGGII 383 VFY +D LGG +I Sbjct: 357 VFYLNDI----CLGGAVI 370 >gi|320540371|ref|ZP_08040021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Serratia symbiotica str. Tucson] gi|320029302|gb|EFW11331.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Serratia symbiotica str. Tucson] Length = 366 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 127/375 (33%), Positives = 201/375 (53%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V +SGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGISGGVDSSVTAYLLQQQGYQVAGLFMKNWEEDDDEE---YCSAAADLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + L AD Sbjct: 65 KLGIKLHTVNFAAEYWDNVFELFLEEYQAGRTPNPDILCNKEIKFKAFLEFAAEDLDADF 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + DGK + R +D +DQSYFL+ + +Q+ FP+G++KK V Sbjct: 125 IATGHYVRRQ---DVDGKSH--LLRGIDSNKDQSYFLYTLSHEQVAQSLFPVGELKKPQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + K+ D + R A G I ++GQ +G+H G++ Sbjct: 180 RCIAEQLALVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGLIASVDGQTVGKHQGLM 237 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINW 310 +T+GQR+GLG+ + EP +VV D ++ ++V PR L + ++++W Sbjct: 238 YHTLGQRKGLGIGGMKDSSEEPWYVVDKDVANNMLVVAQGHDHPR--LMSAGLIAQQLHW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + D + + F+C VK R Q + V DD + V F++ V GQ+ VFY Sbjct: 296 V-DRMPRS---EPFRCTVKTRYRQQDILCRVTPLDDQRIEVRFDEPVAAVTPGQSAVFYQ 351 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 GEI----CLGGGIIE 362 >gi|325927859|ref|ZP_08189083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xanthomonas perforans 91-118] gi|325541699|gb|EGD13217.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xanthomonas perforans 91-118] Length = 378 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 128/374 (34%), Positives = 185/374 (49%), Gaps = 28/374 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+VV +SGGVDSSV A L + G + G+ +Q + A G C A D DA VC Sbjct: 5 RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + + V F + YAAG TP P V CNR VKF L + LGA+ + Sbjct: 61 VLGIPFHFRDFSGEYWSGVFAHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V G R R++ R D +DQSYFL Q QL FP+GD++K ++R Sbjct: 121 ATGHYAQ----VAHRGGRWRLL-RGADRGKDQSYFLHQLGQAQLAATLFPIGDLEKSALR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A++ GL K DS ICF+ + + + + R A G+I GQ + H G+ Sbjct: 176 RIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARAGEIRDPQGQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINWLGD 313 +T+GQR GL + P +VV D N+ + R+S + +L+ + +W+ Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 F C + R Q P V DDG V V FE+ + V GQ+ V Y D Sbjct: 294 A----PPARRFTCTAQTRYRQPDEPCTVDVQDDGSVQVRFERPQRAVTPGQSLVLY--DG 347 Query: 373 NEARVLGGGIISGS 386 E LGG +I+ + Sbjct: 348 QE--CLGGAVIAAT 359 >gi|294668754|ref|ZP_06733847.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309271|gb|EFE50514.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 367 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 128/372 (34%), Positives = 188/372 (50%), Gaps = 24/372 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++V +SGGVDSSV AALLK+ GY V G+ +Q + + C QD +DA V D Sbjct: 10 IIVGLSGGVDSSVTAALLKQQGYQVRGIFMQNWEDDDNDE---YCSIKQDSFDAIAVADI 66 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + + ++ ++++ V F Y+AG TP P V CN +KF L + GAD +A Sbjct: 67 IGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLDYAIEQGADTIA 126 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R + G + + +D +DQSYFL+ QL FPLGD++K VR Sbjct: 127 TGHYARKEVRNG-----MHYLLKGLDQNKDQSYFLYRLKPFQLERAIFPLGDLEKPEVRR 181 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA E L A K DS ICF+ + + + +++ G +V G+ +G H G++ Y Sbjct: 182 LAFEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGKTVGEHVGLMFY 239 Query: 263 TIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI--NWLGDGLFE 317 T+GQR+GLG+ GEP FV L KN V+ G L +Y R + N L L E Sbjct: 240 TLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSLVMNDLSFTLPE 295 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + C + R + P + +D+ V + F++ + V GQ+ V Y D Sbjct: 296 RPREGRYTCKTRYRMADAPCEL-RYLDDETVELVFDEPQWAVTPGQSAVLYDGDV----C 350 Query: 378 LGGGIISGSKRS 389 LGGGII + + Sbjct: 351 LGGGIIMSTDKP 362 >gi|298206785|ref|YP_003714964.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Croceibacter atlanticus HTCC2559] gi|83849417|gb|EAP87285.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Croceibacter atlanticus HTCC2559] Length = 396 Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 124/402 (30%), Positives = 195/402 (48%), Gaps = 49/402 (12%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV +SGGVDSSV A LLK GY+VIG+ ++ ++ + C D DA V + Sbjct: 4 VVVGLSGGVDSSVSAYLLKEQGYEVIGLFMKNWHDDTVTISD-ECPWLDDSNDAMLVAEK 62 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + D E ++ ++ + Y G TP P V CNR +KF + + LGAD +A Sbjct: 63 LGIPFQTVDLSEEYKERIVDYMFNEYKNGRTPNPDVLCNREIKFDVFMKIAMSLGADYVA 122 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R + + DG+ + D +DQSYFL +Q+QL FP+G+++K VR Sbjct: 123 TGHYCR-KSSIEKDGETIYQLLSGKDNNKDQSYFLCQLSQEQLSKTLFPIGELQKSEVRK 181 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-------------- 248 +A E L ADK DSQ +CF+ + + D +++ EGDIV + Sbjct: 182 IAAEQDLVTADKKDSQGLCFIGKVRLPDFLQQQLK--PKEGDIVEIDSTLDQYAKDTKED 239 Query: 249 --------------------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNS 287 +G+++G+H G +T GQR+GLGV EPLFV+ D Sbjct: 240 FNTTEEELAYLSKKFTYNFEDGKVVGKHQGAHYFTKGQRKGLGVGGTPEPLFVIDTDVEE 299 Query: 288 SRVIVGP-RESLEVHR----IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ 342 + + G ++ ++R + EI+W+ + L D D +IR Q + Sbjct: 300 NIIYTGQGKQHPGLYRRGLFVSPHEIHWIREDLKLDT-GDTMNVMARIRYRQTLEKATLH 358 Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + + G+YV F+ + +A GQ +Y + ++G G+IS Sbjct: 359 QTEHGLYVIFDNPQSAIAEGQFVAWY----QDEELIGSGVIS 396 >gi|298369001|ref|ZP_06980319.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria sp. oral taxon 014 str. F0314] gi|298283004|gb|EFI24491.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria sp. oral taxon 014 str. F0314] Length = 367 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 126/383 (32%), Positives = 192/383 (50%), Gaps = 26/383 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++++ P++ ++V +SGGVDSSV AALLK+ G+ V GV +Q + + C Q Sbjct: 1 MNIENTPQN--IIVGLSGGVDSSVTAALLKQQGHRVHGVFMQNWEDDDNDE---YCSIKQ 55 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D + + + ++ ++++ V F Y AG TP P V CN +KF L Sbjct: 56 DSFDAIAVADILGIDIDIVNFAAQYKDKVFAYFLKEYGAGRTPNPDVLCNAEIKFKCFLD 115 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 116 YALEQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLQPFQLERAIFP 170 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 171 LGGLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGK 228 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLREI 308 +G H G++ YT+GQR+GLG+ GEP FV L KN V+ G L +Y R + Sbjct: 229 AVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAGKNLAKNELIVVQGHDHPL----LYTRSL 284 Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 N L L E + C + R + P + +DD + F++ + V GQ+ V Sbjct: 285 VMNDLSFTLPERPKEGRYTCKTRYRMADAPCGL-RYLDDDTAELVFDEPQWAVTPGQSAV 343 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 Y D LGGG+I + + Sbjct: 344 LYDGDV----CLGGGVIMATDKP 362 >gi|189461693|ref|ZP_03010478.1| hypothetical protein BACCOP_02357 [Bacteroides coprocola DSM 17136] gi|189431580|gb|EDV00565.1| hypothetical protein BACCOP_02357 [Bacteroides coprocola DSM 17136] Length = 353 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 122/374 (32%), Positives = 189/374 (50%), Gaps = 30/374 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V++ MSGG DSSV A LL+ GY+V GVT + Y ++ + DAR Sbjct: 3 ENNKVLLGMSGGTDSSVAALLLQDAGYEVTGVTFRFYEKDNNTEY---------LDDARE 53 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 +C+ +++SH +D FR +I F + Y G TP+PC CN +K+ L + + G Sbjct: 54 LCERLHISHITYDARNEFRERIISYFINEYMTGRTPVPCTLCNNYLKWPLLKKLADEKGI 113 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 ATGHY++ R DG + D+++DQS+FL+ Q L + P+G + K Sbjct: 114 YHFATGHYVQKR---NIDGYWH--ITTGTDVDKDQSFFLWGLPQDILQRMLLPMGKLTKN 168 Query: 199 SVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR++A E G L A K DS +CF + + + + + G+ +G LG+H Sbjct: 169 KVREIAAERGFLKAAHKRDSLGVCFCPMDYRSFLKEHVKKELIMPGNFYDESGNCLGKHE 228 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE-SLEVHRIYLREINWLG-DGL 315 G YTIGQRRGLG+ + + LFV + ++ +I+ + SL +YL + + L Sbjct: 229 GYPFYTIGQRRGLGIYLNKALFVKQIIPQTNSIILSDQLCSLGQTEMYLTDWHVTNPSAL 288 Query: 316 FE--DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 FE D ++ VKIR + V DG +++ + +A+GQA FY D Sbjct: 289 FETTDEII------VKIRYRKQANRCTVIPTPDGQLHIKLHEPLTSIAAGQAAAFYRDDV 342 Query: 373 NEARVLGGGIISGS 386 VLGGGII S Sbjct: 343 ----VLGGGIICSS 352 >gi|315146247|gb|EFT90263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX4244] Length = 374 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 127/357 (35%), Positives = 186/357 (52%), Gaps = 26/357 (7%) Query: 36 VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEER 95 A LLK GYDVIG+ ++ ++ + G C A +D D +V D I + +Y ++E+ Sbjct: 22 TALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVADQIGIPYYSVNFEKE 78 Query: 96 FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGD 155 + + V F + Y G TP P V CN+ +KF L QLGAD +ATGHY + V Sbjct: 79 YWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLGADYVATGHYAQ----VET 134 Query: 156 DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKS 215 D M R +D +DQ+YFL +Q QL FPLG M+K VR +A GL A K Sbjct: 135 DENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVRAIADRAGLATAKKK 194 Query: 216 DSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMG 275 DS +CF+ + + + + N A +G++V +G+I G+H+G++ YTIGQR+GLG+ G Sbjct: 195 DSTGVCFIGEKNFKEFLS--NYLPAKKGNMVTEDGEIKGQHDGLMYYTIGQRQGLGIGGG 252 Query: 276 ----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFV 328 EP FV+ D ++ + VG E L + E+++ D + F C Sbjct: 253 GKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVD----TPMPKEFDCTA 308 Query: 329 KIRSSQDPVPVFVQRNDDGV--YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 K R Q +PV V ++DG V F++ V GQA VFY + LGGG+I Sbjct: 309 KFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFY----DGMECLGGGLI 361 >gi|325915390|ref|ZP_08177707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xanthomonas vesicatoria ATCC 35937] gi|325538437|gb|EGD10116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xanthomonas vesicatoria ATCC 35937] Length = 378 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 136/393 (34%), Positives = 194/393 (49%), Gaps = 33/393 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+VV +SGGVDSSV A L + G + G+ +Q + A G C A D DA VC Sbjct: 5 RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + + V F + YAAG TP P V CNR VKF L + LGA+ + Sbjct: 61 VLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V G R R++ R D +DQSYFL Q QL FP+GD++K ++R Sbjct: 121 ATGHYAQ----VAYRGGRWRLL-RGADRGKDQSYFLHQLGQTQLAATVFPIGDLEKSTLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A++ GL K DS ICF+ + + + + R A G+I GQ + H G+ Sbjct: 176 RIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIADHPGVFY 233 Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RESLEVHRIYLR--EINWLGD 313 +T+GQR GL + P +VV D S+ + V R+S + +L+ + +W+ Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSQWLQSEQAHWVTG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 F C + R Q P V DDG V V FE+ + V GQ+ V Y D Sbjct: 294 A----PPARRFTCTAQTRYRQPDEPCTVDVQDDGSVQVRFERPQRAVTPGQSLVLY--DG 347 Query: 373 NEARVLGGGIISGSKRSDAVEESLLSVIGDEFP 405 E LGG +I+ +DA E L+ G FP Sbjct: 348 EE--CLGGAVIAA---TDAPLERQLA--GSSFP 373 >gi|171464102|ref|YP_001798215.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193640|gb|ACB44601.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 370 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 124/385 (32%), Positives = 189/385 (49%), Gaps = 28/385 (7%) Query: 9 LNSLDLDKN-PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 LNS + + PK +VV+ MSGGVDSSV A +LK G++VIG+ ++ + + + C Sbjct: 4 LNSSSIPSSRPK--KVVIGMSGGVDSSVAAWMLKEQGFEVIGLFMKNWEDDDSDEY---C 58 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 A QD D V D I + ++ +R V F YAAG TP P V CN +KF Sbjct: 59 SARQDWLDVVSVADMIGIDVEAVNFATEYRECVFADFLREYAAGRTPNPDVLCNAEIKFK 118 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 L LGAD +ATGHY R R + GK + + + +D+ +DQSYFL TQQQL + Sbjct: 119 AFLDHAMSLGADAIATGHYARVR---HESGKVQ--LLKAVDVSKDQSYFLHRLTQQQLAN 173 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 + FPLG++ K VR +A ++GL A K DS ICF+ + + + + R + G I Sbjct: 174 VMFPLGEIPKTEVRKIADQIGLHNAKKKDSTGICFIGERPFREFLNRYLPRVP--GPIKT 231 Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESLE 299 G+ +G H G+ +T+GQR+G+G+ G+ +V D ++ + V L Sbjct: 232 PEGKTVGEHMGLAFFTLGQRKGIGLGGSQDGNGDAWYVARKDIPNNTLYVAQGHEHPWLL 291 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV 359 + + +W+ E + + + R + + + F ++ V Sbjct: 292 AKTLSAMDASWVSG---EVPSLGSYSAKTRYRQADSACTMSAGAEAQSFELSFLDAQWAV 348 Query: 360 ASGQACVFYTSDSNEARVLGGGIIS 384 GQ+ V Y D LGGGIIS Sbjct: 349 TPGQSAVLYDGDI----CLGGGIIS 369 >gi|289666030|ref|ZP_06487611.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 378 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 129/374 (34%), Positives = 185/374 (49%), Gaps = 28/374 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+VV +SGGVDSSV A L + G + G+ +Q + A G C A D DA VC Sbjct: 5 RIVVGVSGGVDSSVAAWKLAQQGEQIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + + V F + YAAG TP P V CNR VKF L + LGA+ + Sbjct: 61 VLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V G R R++ R D +DQSYFL Q QL FP+GD++K ++R Sbjct: 121 ATGHYAQ----VAHRGGRWRLL-RGADRGKDQSYFLHQLGQTQLAATLFPIGDLEKSTLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 A++ GL K DS ICF+ + + + + R A G+I GQ + H G+ Sbjct: 176 RTAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RESLEVHRIYLR--EINWLGD 313 +T+GQR GL + P +VV D S+ + V R+S + +L+ + +W+ Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 F C + R Q P V DDG V V FE+ + V GQ+ V Y D Sbjct: 294 A----PPARRFSCTAQTRYRQPDEPCTVDVQDDGSVKVHFERPQRAVTPGQSLVLY--DG 347 Query: 373 NEARVLGGGIISGS 386 E LGG +I+ + Sbjct: 348 EE--CLGGAVIAAT 359 >gi|320547685|ref|ZP_08041970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus equinus ATCC 9812] gi|320447760|gb|EFW88518.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus equinus ATCC 9812] Length = 373 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 133/370 (35%), Positives = 193/370 (52%), Gaps = 25/370 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QVGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +++ +DG M R D +DQ+YFL +Q+QL + FPLG ++K VR Sbjct: 125 ATGHY--AQVSRDEDGTVH--MLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H G++ Sbjct: 181 KIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ P FVV D + + + VG ESL + +++ D Sbjct: 239 YTIGQRGGLGIGGQQGGDNAPWFVVGKDLSKNILYVGQGFYHESLMSTSLDASSVHFTRD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ K R Q V V D V F + + + GQA VFY + Sbjct: 299 -MPEEFTME---VTAKFRYRQPDSKVTVHVKGDKAEVVFAEPQRAITPGQAVVFYDGE-- 352 Query: 374 EARVLGGGII 383 LGGGII Sbjct: 353 --ECLGGGII 360 >gi|170732018|ref|YP_001763965.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia cenocepacia MC0-3] gi|205811368|sp|B1JVW3|MNMA_BURCC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|169815260|gb|ACA89843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia cenocepacia MC0-3] Length = 391 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 127/384 (33%), Positives = 182/384 (47%), Gaps = 37/384 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L L A+++ Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDAEMI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + D + R G + +G+++G H G+ Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVVGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGD 313 YT GQR+G+G+ G+P FV D N+ V+ G + R + ++W+ Sbjct: 235 YTFGQRKGIGLGGSKDGNGDPWFVAAKDIASNTLYVVQGHDHPWLLSRELVAGNVSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVY----------VDFEKSEVGVASG 362 + DGF C K R Q D VF + F+ ++ V G Sbjct: 295 ----EPPADGFACGAKTRYRQADAACVFGGAATGAAAAGPAGEARFSLAFDDAQWAVTPG 350 Query: 363 QACVFYTSDSNEARVLGGGIISGS 386 Q+ V Y + LGGGII + Sbjct: 351 QSAVLYDGEI----CLGGGIIESA 370 >gi|317402803|gb|EFV83347.1| tRNA-specific 2-thiouridylase mnmA [Achromobacter xylosoxidans C54] Length = 372 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 126/379 (33%), Positives = 183/379 (48%), Gaps = 28/379 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K RVVV MSGGVDSSV A LLK+ GY+V+G+ ++ + S+ C QD+ DA Sbjct: 7 KKGRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQDLLDAAS 63 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + V ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 64 VADLVGVEFEYVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGA 123 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R R + G R + + +D +DQSYFL Q QL FPLG++ K Sbjct: 124 EHIATGHYARVREVAAEGGGSRFELLKALDGSKDQSYFLHRLNQAQLSRTLFPLGEIHKT 183 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHN 257 VR +A E+GL A K DS ICF+ + + + + R + E G I+ GQ +GRH Sbjct: 184 EVRRIAHEIGLHNAAKKDSTGICFIGERPFREFLNRY---LPTEPGPILTPEGQKVGRHE 240 Query: 258 GIINYTIGQR----------RGLGVAMGEPLFVVY--LDKNSSRVIVGP-RESLEVHRIY 304 G+ YT+GQR R E +V L++N V+ G L + Sbjct: 241 GLSFYTLGQRKGLGVGGVKGRQRDDGTAEAWYVARKDLERNVLYVVQGHDHPWLLSGSLR 300 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 ++++W+ + + + R + D +G +DF + + V GQ+ Sbjct: 301 AQDVSWVAG---QAPAAGEYGAKTRYRQA-DAACRLGDATTEGFTLDFAEPQWAVTPGQS 356 Query: 365 CVFYTSDSNEARVLGGGII 383 V Y D LGGGII Sbjct: 357 AVLYDGDI----CLGGGII 371 >gi|253998326|ref|YP_003050389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylovorus sp. SIP3-4] gi|313200400|ref|YP_004039058.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylovorus sp. MP688] gi|253985005|gb|ACT49862.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylovorus sp. SIP3-4] gi|312439716|gb|ADQ83822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylovorus sp. MP688] Length = 361 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 125/373 (33%), Positives = 185/373 (49%), Gaps = 29/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDSSV A LLK GYDV+G+ ++ + + C A QD+ DA V D Sbjct: 5 RVVVGLSGGVDSSVTALLLKEQGYDVVGLFMKNWEDDDTDE---YCPAKQDLIDAAAVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ + ++ V F Y AG TP P + CN +KF L LGAD++ Sbjct: 62 KIGIELEAVNFSKEYKERVFQNFLEEYQAGRTPNPDIFCNSEIKFKAFLDHAMGLGADLI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + R G + + D +DQSYFL+ Q QL FPLG + K VR Sbjct: 122 ATGHYAQVREKNG-----LFQLLKAEDGSKDQSYFLYRLNQLQLSKTLFPLGGLLKREVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGII 260 ++A GL A K DS ICF+ + + + + R + E G++ G+++G H G++ Sbjct: 177 EIAHREGLVTAGKKDSTGICFIGERPFREFLNRY---LPREPGEMQTPEGKVVGEHEGLM 233 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV--GPRESLEVHR-IYLREINWLG 312 YT+GQR+GL + + GEP FV D + +IV G L + + +++W+ Sbjct: 234 YYTLGQRQGLKIGGSRESNGEPWFVAGKDMQRNVLIVVQGHDHPLLCNDGLVASQLHWIA 293 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 E V K R Q P + R ++ + F + + + GQ+ V Y S Sbjct: 294 GEAPETHWVYA----AKTRYRQPDAPCEIDRLEESETEIRFGQPQWAITPGQSAVVYESQ 349 Query: 372 SNEARVLGGGIIS 384 LGGGII+ Sbjct: 350 V----CLGGGIIT 358 >gi|153809107|ref|ZP_01961775.1| hypothetical protein BACCAC_03417 [Bacteroides caccae ATCC 43185] gi|149128440|gb|EDM19659.1| hypothetical protein BACCAC_03417 [Bacteroides caccae ATCC 43185] Length = 361 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 126/387 (32%), Positives = 191/387 (49%), Gaps = 59/387 (15%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV+V MSGG+DS+ +L+ GY+++GVT++++ G + DAR Sbjct: 4 RNKRVLVGMSGGIDSTATCLMLQERGYEIVGVTMRVW--------------GDEPQDARE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + HYV D F+ ++ F Y G TP PCV CN KF L +LG Sbjct: 50 LAAQMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLGC 109 Query: 139 DVLATGHYIRSR-----LYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 +ATGHY R +Y+ GDD K +DQSYFL+ Q L FP Sbjct: 110 AWVATGHYSRLEERNGDIYIVAGDDDK------------KDQSYFLWQLGQDVLRRCIFP 157 Query: 192 LGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVH 247 LGD K VR+ + G + K +S ++CF+ +G Y D ++ + E G V+ Sbjct: 158 LGDYTKVKVREYLADKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDNEIGPGWFVN 216 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 G LG+H G YTIGQR+GL +A+G+P +V+ ++ + V++G E L + Sbjct: 217 SEGVKLGQHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLRTDYMLTE- 275 Query: 308 INWLGDGLFEDAVVDG---FKC---FVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360 +D +VD F+C V+IR P+P V+R DG + V F ++ +A Sbjct: 276 ---------QDKIVDERELFQCENLTVRIRYRSRPLPCRVKRLADGRLLVRFLETASAIA 326 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSK 387 GQ+ VFY RVLGG I+ + Sbjct: 327 PGQSAVFYDG----RRVLGGAFIASQR 349 >gi|315167557|gb|EFU11574.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX1341] Length = 351 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 126/354 (35%), Positives = 185/354 (52%), Gaps = 26/354 (7%) Query: 39 LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRN 98 LLK GYDVIG+ ++ ++ + G C A +D D +V D I + +Y ++E+ + + Sbjct: 2 LLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVADQIGIPYYSVNFEKEYWD 58 Query: 99 AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGK 158 V F + Y G TP P V CN+ +KF L QLGAD +ATGHY + V D Sbjct: 59 RVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLGADYVATGHYAQ----VETDEN 114 Query: 159 RRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQ 218 M R +D +DQ+YFL +Q QL FPLG M+K VR +A GL A K DS Sbjct: 115 GVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVRAIAERAGLATAKKKDST 174 Query: 219 DICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMG--- 275 +CF+ + + + + N A +G++V +G+I G+H+G++ YTIGQR+GLG+ G Sbjct: 175 GVCFIGEKNFKEFLS--NYLPAKKGNMVTEDGEIKGQHDGLMYYTIGQRQGLGIGGGGKT 232 Query: 276 -EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR 331 EP FV+ D ++ + VG E L + E+++ D + F C K R Sbjct: 233 QEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVD----TPMPKEFDCTAKFR 288 Query: 332 SSQDPVPVFVQRNDDGV--YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 Q +PV V ++DG V F++ V GQA VFY + LGGG+I Sbjct: 289 YRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFY----DGMECLGGGLI 338 >gi|269214555|ref|ZP_05986816.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria lactamica ATCC 23970] gi|269209446|gb|EEZ75901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria lactamica ATCC 23970] Length = 367 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 126/372 (33%), Positives = 185/372 (49%), Gaps = 24/372 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++V +SGGVDSSV AALLK+ GY V GV +Q + + C QD +DA V D Sbjct: 10 IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDEY---CSIKQDSFDAIAVADI 66 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + + ++ ++++ V F Y+AG TP P V CN +KF L GAD +A Sbjct: 67 VGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYAVGQGADTIA 126 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R + G + + +D +DQSYFL+ QL FPLG ++K VR Sbjct: 127 TGHYARKEVCNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLGGLEKPEVRR 181 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA E L A K DS ICF+ + + + +++ G +V G+ +G H G++ Y Sbjct: 182 LAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGKTVGEHVGLMFY 239 Query: 263 TIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI--NWLGDGLFE 317 T+GQR+GLG+ GEP FV L KN V+ G L +Y R + N L L E Sbjct: 240 TLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSLVMNDLSFTLPE 295 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + C + R + P + +D+ + F++ + V GQ+ V Y D Sbjct: 296 CPKAGHYTCKTRYRMADAPCEL-RYLDDETAELVFDEPQWAVTPGQSAVLYDGDI----C 350 Query: 378 LGGGIISGSKRS 389 LGGGII + + Sbjct: 351 LGGGIIQTTDKP 362 >gi|288906423|ref|YP_003431645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus gallolyticus UCN34] gi|288733149|emb|CBI14730.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus gallolyticus UCN34] Length = 373 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 133/370 (35%), Positives = 195/370 (52%), Gaps = 25/370 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +++ +DG M R D +DQ+YFL +Q+QL + FPLG ++K VR Sbjct: 125 ATGHY--AQVSRDEDGTVH--MLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS ICF+ + + + + + A +G ++ ++G+ +G H G++ Sbjct: 181 KIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEHAGLMY 238 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR GLG+ +P FVV D + + + VG +SL + I++ D Sbjct: 239 YTIGQRGGLGIGGQQGGDNQPWFVVGKDLSKNILYVGQGFYHDSLMSTSLDASSIHFTRD 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + E+ ++ K R Q V V V F++ + + GQA VFY + Sbjct: 299 -MPEEFTME---VTAKFRYRQPDSKVTVHVKGAKAEVVFDEPQRAITPGQAVVFYDGE-- 352 Query: 374 EARVLGGGII 383 LGGGII Sbjct: 353 --ECLGGGII 360 >gi|322412887|gb|EFY03795.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 373 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 139/379 (36%), Positives = 195/379 (51%), Gaps = 29/379 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V Sbjct: 6 NTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 63 ADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + + +DG M R D +DQ+YFL +Q+QL FPLG ++K Sbjct: 123 YVATGHYAQVKR--DEDGVVH--MLRGADNGKDQTYFLSQLSQKQLQKTLFPLGHLQKPE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H G+ Sbjct: 179 VRQIAERAGLATAKKKDSTGICFIGEKNFKTFLSQYLP--AQKGRMMTVDGRDMGEHAGL 236 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + YTIGQR GLG+ +P FVV D + + + VG ESL + ++ Sbjct: 237 MYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASIVH-- 294 Query: 312 GDGLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 F V + F KC K R Q V V D V F + + + GQA VFY Sbjct: 295 ----FTREVPEEFTLKCTAKFRYRQPDSKVTVHVKGDKAEVVFAEPQRAITPGQAVVFY- 349 Query: 370 SDSNEARVLGGGIISGSKR 388 D E LGGG+I + R Sbjct: 350 -DGEEC--LGGGMIDMAYR 365 >gi|254523199|ref|ZP_05135254.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Stenotrophomonas sp. SKA14] gi|219720790|gb|EED39315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Stenotrophomonas sp. SKA14] Length = 380 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 133/393 (33%), Positives = 189/393 (48%), Gaps = 32/393 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V +SGGVDSSV A L + G V G+ +Q + A G C A D DA VC Sbjct: 5 RVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + V F + YAAG TP P V CNR VKF L R+LGA+ + Sbjct: 61 LLGIPFHFRDFSSEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R G + ++ R D +DQSYFL QQQL FP+GD++K +R Sbjct: 121 ATGHYARVTQRGG-----QWLLLRGADRSKDQSYFLHQLGQQQLAATLFPIGDLEKSDLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNGQILGRHNGII 260 +AR++GL K DS ICF+ + + + + R A G I+ +G ++ H G+ Sbjct: 176 RIARDVGLPTHAKKDSTGICFIGERDFREFLGRYLP--AKPGQILDPADGSVIAEHPGVF 233 Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RES--LEVHRIYLREINWLG 312 +T+GQR GL + P +VV D S+ + V R+S + R+ +W+ Sbjct: 234 YFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSRWMLSDRLRSETAHWIA 293 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 F+C + R Q P V+ DDG V V F + + V GQ+ V Y D Sbjct: 294 G----SPPARRFECTAQTRYRQPDEPCTVEVLDDGSVLVSFARPQRAVTPGQSLVLYDGD 349 Query: 372 SNEARVLGGGIISGSKRSDAVEESLLSVIGDEF 404 LGG +I+ +DA E L F Sbjct: 350 V----CLGGAVIAA---TDAPLEQRLRTTPSPF 375 >gi|56475956|ref|YP_157545.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein [Aromatoleum aromaticum EbN1] gi|81598997|sp|Q5P7R7|MNMA_AZOSE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|56311999|emb|CAI06644.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein [Aromatoleum aromaticum EbN1] Length = 374 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 125/388 (32%), Positives = 193/388 (49%), Gaps = 35/388 (9%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 + +P M+VVV MSGGVDSSV A LLK+ G+DV G+ ++ + + C QD+ Sbjct: 4 NTDPNGMKVVVGMSGGVDSSVTALLLKQQGFDVTGLFMKNWEDDDDDE---YCSTRQDLV 60 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 D VCD I + V ++ +++ V F Y AG TP P V CN +KF L Sbjct: 61 DVASVCDVIGIDLEVVNFSAEYKDRVFADFLREYEAGRTPNPDVLCNSEIKFRCFLDHAM 120 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD +ATGHY + R + +DG+ + + D +DQSYFL+ Q QL FPLG Sbjct: 121 ALGADRIATGHYAQVREWA-NDGRSEYQLLKAEDGTKDQSYFLYRLNQAQLAKTLFPLGA 179 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQIL 253 + K VR +A E GL +A+K DS ICF+ + + + + R G+I +L +G+++ Sbjct: 180 LYKRDVRRIAAEAGLHVAEKKDSTGICFIGERPFREFLMRYLP--MRPGEIRNLDDGRVI 237 Query: 254 GRHNGIINYTIGQRRGL----------GVAMGEPLFVVYLDKNSSRVIV---GPRESLEV 300 G H G++ +TIGQR+GL G + +V D ++ + +L Sbjct: 238 GEHQGLMYHTIGQRKGLHIGGIKGRQDGAGEHDAWYVAGKDVKANVLYAVQGHEHPALLK 297 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFV---KIRSSQDPVPVFVQR-NDDGVYVDFEKSE 356 R+ +++W+ A D +V K R +P ++ D G + F + + Sbjct: 298 TRLSATDLHWI-------AGRDPHTHWVYTAKPRYRTPDMPCEIEALVDGGAEIVFAEPQ 350 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384 + GQ+ V Y S LGGG+I+ Sbjct: 351 WALTPGQSVVVYESKV----CLGGGVIA 374 >gi|222112576|ref|YP_002554840.1| tRNA-specific 2-thiouridylase mnma [Acidovorax ebreus TPSY] gi|254811451|sp|B9MIA2|MNMA_DIAST RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|221732020|gb|ACM34840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidovorax ebreus TPSY] Length = 370 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 125/379 (32%), Positives = 186/379 (49%), Gaps = 33/379 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDS+V A LLK+ G++V+G+ ++ + S+ C + QD DA V D Sbjct: 5 RVVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---FCSSRQDFLDAASVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y AG TP P V CN +KF L +LGA+ + Sbjct: 62 VIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAEKI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R + + + +D +DQSYFL Q QL FP+GD+ K VR Sbjct: 122 ATGHYARVRQ---NPATGLFELLKGLDPSKDQSYFLHRLNQAQLSKTLFPVGDLHKTEVR 178 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A ++GL A K DS ICF+ + + + + R G I+ G+ LGRH G+ Sbjct: 179 RIAADIGLPNAKKKDSTGICFIGERPFREFLNRYIQ--HAPGPILDDRGRKLGRHVGLSF 236 Query: 262 YTIGQRRGLGV----------AMGE--PLFVV--YLDKNSSRVIVGPRES-LEVHRIYLR 306 YT+GQR+GLG+ G+ P FV L+ N+ RV+ G L HR+ + Sbjct: 237 YTLGQRQGLGIGGVKEKGAQRGAGDHAPWFVARKELETNTLRVVQGHEHPWLLSHRLDAQ 296 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 + +W+ C K R QD + D + F +++ V GQ+ Sbjct: 297 DASWIAGHPPAAGA-----CAAKTRYRQQDAACTVLAAQGDAFSLQFPEAQWAVTPGQSA 351 Query: 366 VFYTSDSNEARVLGGGIIS 384 V Y + LGGG+I+ Sbjct: 352 VLYDGEV----CLGGGVIA 366 >gi|296315198|ref|ZP_06865139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria polysaccharea ATCC 43768] gi|296837925|gb|EFH21863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria polysaccharea ATCC 43768] Length = 367 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 126/372 (33%), Positives = 185/372 (49%), Gaps = 24/372 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++V +SGGVDSSV AALLK+ GY V GV +Q + + C QD +DA V D Sbjct: 10 IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDSFDAIAVADI 66 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + + ++ ++++ V F Y+AG TP P V CN +KF L GAD +A Sbjct: 67 VGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYAVVQGADTIA 126 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R + G + + +D +DQSYFL+ QL FPLG ++K VR Sbjct: 127 TGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLGGLEKPEVRR 181 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA E L A K DS ICF+ + + + +++ G +V G+ +G H G++ Y Sbjct: 182 LAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGKTVGEHVGLMFY 239 Query: 263 TIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI--NWLGDGLFE 317 T+GQR+GLG+ GEP FV L KN V+ G L +Y R + N L L E Sbjct: 240 TLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSLVMNDLSFTLPE 295 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + C + R + P + +D+ + F++ + V GQ+ V Y D Sbjct: 296 RPKAGRYTCKTRYRMADAPCEL-RYLDDETAELVFDEPQWAVTPGQSAVLYDGDI----C 350 Query: 378 LGGGIISGSKRS 389 LGGGII + + Sbjct: 351 LGGGIIQTTDKP 362 >gi|259046678|ref|ZP_05737079.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Granulicatella adiacens ATCC 49175] gi|259036843|gb|EEW38098.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Granulicatella adiacens ATCC 49175] Length = 374 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 132/373 (35%), Positives = 192/373 (51%), Gaps = 27/373 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V Sbjct: 6 IRVVVGMSGGVDSSVTALLLKEAGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAAVA 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + I + +Y ++E+ + + V F Y G TP P V CN+ VKF L QLGAD Sbjct: 63 EQIGIPYYSVNFEKEYWDRVFEYFLREYRLGRTPNPDVMCNKEVKFQAFLDYALQLGADY 122 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY R V D + R D +DQ+YFL Q+QL FP+G ++K+ V Sbjct: 123 VAMGHYAR----VEKDENGIVHLLRGKDNNKDQTYFLSQLNQKQLEKAMFPIGHLEKKEV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A + L A K DS +CF+ + + + + N A G +V L+G++ G H G++ Sbjct: 179 REIAEKYDLATAKKKDSTGVCFIGERNFNEFLS--NYLPAKPGKMVTLDGEVKGDHAGLM 236 Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR+GLG+ +P FV+ D +++ + VG +L + +I + D Sbjct: 237 YYTIGQRQGLGIGGGGKTNDPWFVIGKDLSTNTLYVGQGFHHPNLYSDSLTATDIQFTND 296 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVASGQACVFYTS 370 E F+C K R Q V V +++ V F++ + GQA VFY Sbjct: 297 LPREKT----FECTAKFRYRQQDTKVKVVLDEKDPTRATVIFDEPVRAITPGQAVVFY-- 350 Query: 371 DSNEARVLGGGII 383 N LGGGII Sbjct: 351 --NGEECLGGGII 361 >gi|29349296|ref|NP_812799.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides thetaiotaomicron VPI-5482] gi|29341204|gb|AAO78993.1| putative tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Bacteroides thetaiotaomicron VPI-5482] Length = 351 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 124/379 (32%), Positives = 185/379 (48%), Gaps = 59/379 (15%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGG+DS+ +L+ GY+++GVT++++ G + DAR + + + Sbjct: 1 MSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARELAARMGIE 46 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 HYV D F+ ++ F Y G TP PCV CN KF L +L +ATGHY Sbjct: 47 HYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLAEWADKLDCAYIATGHY 106 Query: 147 IR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 R +Y+ GDD K +DQSYFL+ Q L FPLGD K Sbjct: 107 SRLEERSGHIYIVAGDDDK------------KDQSYFLWRLGQDILKRCIFPLGDYTKIK 154 Query: 200 VRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGR 255 VR+ E G + K +S ++CF+ QG Y D ++ + E G V+ G LG+ Sbjct: 155 VREYLAEKGYEAKSKEGESMEVCFI-QGDYRDFLREQCPELDTEIGPGWFVNSEGVKLGQ 213 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H G YTIGQR+GL +A+G+P +V+ ++ + V++G E L+ + Sbjct: 214 HKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLQTEYMLAE--------- 264 Query: 316 FEDAVVDGFKCF------VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 +D +VD + F V+IR P+P V+R +DG + V F ++ VA GQ+ VFY Sbjct: 265 -QDRIVDEQELFSCENLAVRIRYRSRPIPCRVKRLEDGRLLVRFRETASAVAPGQSAVFY 323 Query: 369 TSDSNEARVLGGGIISGSK 387 RVLGG I+ + Sbjct: 324 DG----RRVLGGAFIASQR 338 >gi|261493287|ref|ZP_05989814.1| hypothetical protein COK_1696 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311137|gb|EEY12313.1| hypothetical protein COK_1696 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 406 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 125/387 (32%), Positives = 210/387 (54%), Gaps = 29/387 (7%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +L L +N K +V++ MSGGVDSSV A +L++ GY V G+ ++ + + C Sbjct: 35 KLTPEQLAENSKK-KVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YC 90 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 A D+ DA+ V D + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 91 TAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFK 150 Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L + LGAD +ATGHY+R DD + + R +D +DQSYFL+A ++Q+ Sbjct: 151 AFLEYAAEDLGADYIATGHYVRR---TSDDQDAK--LLRGLDENKDQSYFLYALNKKQIG 205 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 206 QSLFPVGEIEKPIVRVIAEDLGLATAKKKDSTGICFIGERKFKDFLARFLP--AQPGEIR 263 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298 + G+++GRH+G++ +T+GQR+GLG+ +P +VV D ++ +IV +L Sbjct: 264 TVEGKLVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLIVAQGHDNSAL 323 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEV 357 + +++ W+ + + +C VK R Q + +Q +D+ + V F++ ++ Sbjct: 324 LSSGLIAKQLTWVD----MQPLRENLRCTVKTRYRQADIACEIQVLDDETIRVMFDEPQI 379 Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGGII Sbjct: 380 AVTPGQSAVFYLGEV----CLGGGIIE 402 >gi|261496469|ref|ZP_05992849.1| hypothetical protein COI_2187 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307672|gb|EEY08995.1| hypothetical protein COI_2187 [Mannheimia haemolytica serotype A2 str. OVINE] Length = 405 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 125/387 (32%), Positives = 210/387 (54%), Gaps = 29/387 (7%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +L L +N K +V++ MSGGVDSSV A +L++ GY V G+ ++ + + C Sbjct: 34 KLTPEQLAENSKK-KVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTDY---C 89 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 A D+ DA+ V D + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 90 TAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFK 149 Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L + LGAD +ATGHY+R DD + + R +D +DQSYFL+A ++Q+ Sbjct: 150 AFLEYAAEDLGADYIATGHYVRR---TSDDQDAK--LLRGLDENKDQSYFLYALNKKQIG 204 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 205 QSLFPVGEIEKPIVRVIAEDLGLATAKKKDSTGICFIGERKFKDFLARFLP--AQPGEIR 262 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298 + G+++GRH+G++ +T+GQR+GLG+ +P +VV D ++ +IV +L Sbjct: 263 TVEGKLVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLIVAQGHDNSAL 322 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEV 357 + +++ W+ + + +C VK R Q + +Q +D+ + V F++ ++ Sbjct: 323 LSSGLIAKQLTWVD----MQPLRENLRCTVKTRYRQADIACEIQVLDDETIRVMFDEPQI 378 Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGGII Sbjct: 379 AVTPGQSAVFYLGEV----CLGGGIIE 401 >gi|270156742|ref|ZP_06185399.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Legionella longbeachae D-4968] gi|289164811|ref|YP_003454949.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Legionella longbeachae NSW150] gi|269988767|gb|EEZ95021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Legionella longbeachae D-4968] gi|288857984|emb|CBJ11844.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Legionella longbeachae NSW150] Length = 361 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 124/371 (33%), Positives = 194/371 (52%), Gaps = 27/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++ MSGGVDSSV A LL+ GY V G+ ++ + + + G C A QD+ DA+ VC+ Sbjct: 4 KVIIGMSGGVDSSVAAWLLQETGYQVEGLFMKNW---EQDDKDGFCPAAQDLADAQAVCN 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + ++ + + V F S Y G TP P V CN+ +KF L LGAD + Sbjct: 61 QLRIPLHTTNFSKEYWQNVFTYFLSEYEKGRTPNPDVLCNKEIKFKAFLDHALTLGADYI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY ++ + GD G + + D ++DQ+YFL A + L FP+GD K +R Sbjct: 121 ATGHYAKNVI-DGDTG----FLFKAKDRDKDQTYFLHAVDPKALGKTLFPIGDYTKTEIR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 + A+++GL K DS ICF+ + ++ ++ +A G+I + G++LG+H+G++ Sbjct: 176 EFAQKLGLVTHAKKDSTGICFIGEKRFKSFLQEFI--LARPGEIKNTEGKVLGKHDGLMF 233 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313 YTIGQR+GLG+ +P +VV D +++ + V L H + I+WL D Sbjct: 234 YTIGQRQGLGIGGLQNTSDDPWYVVDKDISTNTLYVAQGSQHPMLYAHGLVCGPIHWLAD 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDS 372 +D + C+ K R Q + D + YV F + V GQ VFY D Sbjct: 294 --CKDRLP--LTCYAKTRYRQAEQGCMISPEDGNQHYVMFSNPQRAVTPGQYIVFY--DK 347 Query: 373 NEARVLGGGII 383 N+ LGG I Sbjct: 348 NQC--LGGATI 356 >gi|254246300|ref|ZP_04939621.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia cenocepacia PC184] gi|124871076|gb|EAY62792.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia cenocepacia PC184] Length = 447 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 127/381 (33%), Positives = 181/381 (47%), Gaps = 37/381 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D Sbjct: 61 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVAD 117 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L L A+++ Sbjct: 118 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDAEMI 177 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 178 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 232 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + D + R G + +G+++G H G+ Sbjct: 233 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVVGEHIGLAF 290 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGD 313 YT GQR+G+G+ G+P FV D N+ V+ G + R + ++W+ Sbjct: 291 YTFGQRKGIGLGGSKDGNGDPWFVAAKDIASNTLYVVQGHDHPWLLSRELVAGNVSWVAG 350 Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVY----------VDFEKSEVGVASG 362 + DGF C K R Q D VF + F+ ++ V G Sbjct: 351 ----EPPADGFACGAKTRYRQADAACVFGGAATGAAAAGPAGEARFSLAFDDAQWAVTPG 406 Query: 363 QACVFYTSDSNEARVLGGGII 383 Q+ V Y + LGGGII Sbjct: 407 QSAVLYDGEI----CLGGGII 423 >gi|12045151|ref|NP_072962.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma genitalium G37] gi|1723144|sp|P47537|MNMA_MYCGE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|3844874|gb|AAC71516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma genitalium G37] gi|166078872|gb|ABY79490.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [synthetic Mycoplasma genitalium JCVI-1.0] Length = 367 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 118/377 (31%), Positives = 193/377 (51%), Gaps = 33/377 (8%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ---------LYNSRKASKRKGSCCAGQDV 73 V + +SGGVDS+V A LLK+ +VIGV ++ Y +K + K C + QD Sbjct: 8 VFIGLSGGVDSAVSALLLKKQYQEVIGVFMECWDETLNNDFYGHKKINNNKSGCSSFQDF 67 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 A+++ +++ + + E + N V +P S+ G TP P + CNR +KF L Sbjct: 68 QQAKKIANSLGIKLIKKNLIEAYWNKVFLPMIQSFKKGLTPNPDIWCNRFIKFGLLHDFC 127 Query: 134 RQLGADVL-ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 +Q+ + L ATGHY + + + + ++ P D +DQ+YFL ++Q ++ FPL Sbjct: 128 KQINPNSLFATGHYAKINMI-----ENQPLLSIPKDTNKDQTYFLANVKKEQFQNVIFPL 182 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR---INAGIALEGDIVHLN 249 D+KK +VR++ARE ++ADK DS ICF+ + + D +K + G+ + Sbjct: 183 ADLKKITVRNIARENNWEVADKKDSTGICFIGERHFSDFLKNYLPVKKGLIKDWK----T 238 Query: 250 GQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG-PRESLEVHRIYLRE 307 Q + H+G+ YTIGQR GL + + + FVV D ++ + V +E L I L + Sbjct: 239 KQTISEHDGVWFYTIGQRSGLNLGGLKQRHFVVAKDIETNELFVSCDKEELLKTTILLDQ 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDP-VPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 NW L+ + + V+IR +Q P + +D+ + + F+ + VASGQ V Sbjct: 299 FNW----LYTPKQLPS-QVLVRIRHAQKPEIAKLKLLSDNKLEITFKNPVISVASGQFGV 353 Query: 367 FYTSDSNEARVLGGGII 383 YT D LG G+I Sbjct: 354 LYTLDQ---ICLGAGLI 367 >gi|167564053|ref|ZP_02356969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia oklahomensis EO147] Length = 409 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 131/412 (31%), Positives = 185/412 (44%), Gaps = 58/412 (14%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L LGA + Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGARTI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKTKVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + D + R G + +G+ +G H G+ Sbjct: 177 EIAEQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGD 313 YT GQR+G+G+ GEP FV D N+ V+ G + R + ++W+ Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRELVAGNVSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQ------------------------------DPVPVFVQR 343 + DG +C K R Q P V Sbjct: 295 ----EPPADGVRCGAKTRYRQADAACAFGRATSGRAAPGRAASGQHASDGGAPSGVAADA 350 Query: 344 NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII--SGSKRSDAVE 393 + + + F++ + V GQ+ V Y D LGGGII + + R DA Sbjct: 351 SGERFSLTFDEPQWAVTPGQSAVLYDGDV----CLGGGIIESAATGRPDAAH 398 >gi|319954152|ref|YP_004165419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cellulophaga algicola DSM 14237] gi|319422812|gb|ADV49921.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cellulophaga algicola DSM 14237] Length = 396 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 123/400 (30%), Positives = 195/400 (48%), Gaps = 43/400 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV A LLK GY+VIG+ ++ ++ + C +D DA V + Sbjct: 3 KVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDTVTISD-ECPWLEDSNDAMIVAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + D ++ ++ YA G TP P V CNR +KF + + QLGAD + Sbjct: 62 KLGIPFQTVDLSAEYKERIVDYMFDEYAKGRTPNPDVLCNREIKFDVFMKIALQLGADYV 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + + DG + D +DQSYFL +Q+QL FP+G++ K VR Sbjct: 122 ATGHYCKKGIIKNSDGSETYQLLAGEDPNKDQSYFLCQLSQEQLAKTLFPVGELLKPEVR 181 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVK---RINAGIALE---------------- 242 +A L ADK DSQ +CF+ + + D ++ + G+ +E Sbjct: 182 RIAAANELITADKKDSQGLCFIGKVRLPDFLQQKLKPKKGVIIEVPSTIAHFQEAPTEFL 241 Query: 243 -----------GDIVHL-NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSR 289 I HL +G+++G H G +T GQR+GL V EPLFV+ D + + Sbjct: 242 NKNEELAYFAKKPIYHLTDGKVVGNHQGAHYFTKGQRKGLDVGGTKEPLFVIETDVDENI 301 Query: 290 VIVGPRESLE-VHRIYL----REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN 344 + G ++ ++R L E++W+ L + D + +IR Q+ + + Sbjct: 302 IYTGQGKAHPGLYRRTLFVSDAELHWVRTDL-ALKMDDSLQVLARIRYRQELQKATLYKV 360 Query: 345 DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + G+YVDFE+ + + GQ +Y D ++G G+IS Sbjct: 361 EGGMYVDFEEKQSAITEGQFVAWYLKDD----LIGSGVIS 396 >gi|285018226|ref|YP_003375937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xanthomonas albilineans GPE PC73] gi|283473444|emb|CBA15949.1| probable trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase protein [Xanthomonas albilineans] Length = 397 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 127/387 (32%), Positives = 184/387 (47%), Gaps = 37/387 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY----------NSRKASKRK---GSCC 68 R++V +SGGVDSSV A L + G+ V G+ +Q + ++ A RK +C Sbjct: 5 RIMVGVSGGVDSSVAAWQLVQQGHTVSGLFMQNWADDGNGDVHDSASIAEDRKPKATTCR 64 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 A D DA VC + + + D+ + + V F + YAAG TP P V CNR VKF Sbjct: 65 AEADRRDAVAVCGMLGIPFHFRDFSKEYWQGVFAHFLAEYAAGRTPNPDVLCNREVKFKH 124 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 L R LGA+ +ATGHY R RR + R +D +DQSYFL Q QL Sbjct: 125 FLDAARDLGAERIATGHYARVAFV-----DRRWRLLRGLDRNKDQSYFLHQLGQAQLAAT 179 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 FP+G++ KE VR +AR+ GL K DS ICF+ + + + R A G+I Sbjct: 180 LFPVGELPKEQVRRIARQAGLPTHAKKDSTGICFIGERDFRTFLSRYLP--ARRGEIRDP 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RESLEVHR 302 + QI+ H G+ +T+GQR GL + P +V+ D + + V R+S + Sbjct: 238 HEQIVAEHPGVFYFTLGQREGLNIGGVRGRAAAPWYVIGKDVARNVLYVDQDRDSPHLMA 297 Query: 303 IYLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGV 359 LR +W+ F C + R Q P V+ DDG + V F + + V Sbjct: 298 TQLRSESAHWIAGA----PPARHFACRAQTRYRQADEPCMVEIRDDGTLTVQFTRPQRAV 353 Query: 360 ASGQACVFYTSDSNEARVLGGGIISGS 386 GQ+ V Y + LGG +I+ + Sbjct: 354 TPGQSLVLYQGEE----CLGGAVIATT 376 >gi|78356066|ref|YP_387515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|123552952|sp|Q313S6|MNMA_DESDG RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|78218471|gb|ABB37820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 356 Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 120/368 (32%), Positives = 173/368 (47%), Gaps = 19/368 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + VA+SGG DS + G+ V + + + + + C Sbjct: 1 MHIAVAVSGGTDSLFALLQVLEAGHQVTALHAHFLSPHDTPE-----TTAHNTQAIEKAC 55 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + +V D FR VI PF +Y G TP PC CN ++KF L R+LGA Sbjct: 56 RALGADFHVEDLSAAFRKHVIEPFIDAYRQGRTPNPCARCNASMKFGLLADTARKLGAQA 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + G + R D +DQSYFL Q +L FPLG +K+ V Sbjct: 116 IATGHYARLQPDLPRPGNTVSLW-RGDDPAKDQSYFLSLVPQHRLACAVFPLGGWRKQDV 174 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R ++ G+ S+SQ+ICF+ Y + AG+ G +V +G ++G HNG+ Sbjct: 175 RAHLKQRGIVPPLPSESQEICFIPGDDYRAYLTAHAAGLPGAGPMVLRDGHVVGHHNGLW 234 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL-GDGLFEDA 319 YT GQRRGLG+A EPL+V+ D + + ++VG R+ L +N L + DA Sbjct: 235 QYTEGQRRGLGIAWSEPLYVLEKDVSRNALVVGTRKQLTARGCRCVGVNTLVPPDQWPDA 294 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG---VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 V +VK R Q + V + DG + V F S A+GQ Y + R Sbjct: 295 V------YVKTRYRQTMIAAQVTPDADGADTMRVIFAASHTPPAAGQVAAVYDA---AGR 345 Query: 377 VLGGGIIS 384 VL GGII+ Sbjct: 346 VLAGGIIA 353 >gi|160915329|ref|ZP_02077542.1| hypothetical protein EUBDOL_01338 [Eubacterium dolichum DSM 3991] gi|158433128|gb|EDP11417.1| hypothetical protein EUBDOL_01338 [Eubacterium dolichum DSM 3991] Length = 387 Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 121/376 (32%), Positives = 195/376 (51%), Gaps = 29/376 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 +V++ +SGGVDS+V A LLK GYDV ++ +++ + G+ C QD Sbjct: 5 KVLLGLSGGVDSAVAAYLLKEAGYDVTCAFMRNWDAYANNDILGNPTISNEVCPQEQDFM 64 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ V + + + D+ + + + V F S Y G TP P + CN+ +KF L+ Sbjct: 65 DAKAVAEKLELPLLRVDFVKEYWDHVFQYFLSEYEKGRTPNPDILCNKYIKFDAFLNYAN 124 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 ++G D++A GHY + + G + + R D +DQ+YFL QQ L FP+G Sbjct: 125 KMGFDMVAMGHYAQV-----EHGPKESRLIRGADTNKDQTYFLAQVPQQSLQHALFPIGH 179 Query: 195 MKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QI 252 ++K VR +A+E+ LD ++ K DS ICF+ + + + N + +GDIV + ++ Sbjct: 180 LEKHEVRQIAKELHLDSVSAKKDSTGICFIGERNFKAFLS--NYLPSKDGDIVDIESLEV 237 Query: 253 LGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLD--KNSSRVIVGPR-ESLEVHRIYLREI 308 +GRH G++ YTIGQR+GLG+ + P FVV D KN V G + L + + + Sbjct: 238 IGRHAGVLYYTIGQRKGLGIGGNKGPWFVVGKDVEKNVLYVTNGNESDWLFTNSCIVSGV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 NW + + + + C K R Q D V +D+ V+V + + V SGQ VF Sbjct: 298 NWFSN----ERPSEDYACTAKFRYRQADNAVVLRFIDDNTVFVRYSQKVAAVTSGQEAVF 353 Query: 368 YTSDSNEARVLGGGII 383 Y +++ LGGG+I Sbjct: 354 YQNET----CLGGGVI 365 >gi|319787135|ref|YP_004146610.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudoxanthomonas suwonensis 11-1] gi|317465647|gb|ADV27379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudoxanthomonas suwonensis 11-1] Length = 373 Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 128/383 (33%), Positives = 184/383 (48%), Gaps = 46/383 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R VV +SGGVDSSV A LL + G + G+ +Q ++ + G C A +D DA VC Sbjct: 6 RTVVGVSGGVDSSVAAWLLAQSGEPLAGLFMQNWDDDGS----GECRAEEDRRDAVAVCG 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + + V F + YAAG TP P V CNR VKF L R+LGA+ + Sbjct: 62 RLGIPFHFRDFSKEYWAGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V +G R R++ R D ++DQ+YFL Q QL FP+G + K VR Sbjct: 122 ATGHYAQ----VLHEGGRWRLL-RGADRDKDQTYFLHQLGQAQLAATLFPIGHLPKAEVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LARE GL K DS ICF+ + + + + R A A G+I G +G H G+ Sbjct: 177 RLAREAGLPTHAKKDSTGICFIGERDFREFLGRYLA--AQPGEIRDPQGVRIGTHPGVFY 234 Query: 262 YTIGQRRGLGVA--MGEPLFVVYL--------------DKNSSRVIVGPRESLEVHRIYL 305 +T+GQR GL + G P Y+ D++S ++ G E+ +H + Sbjct: 235 FTLGQREGLAIGGVRGRPAAPWYVVGKDVAGNILYVDQDRDSPWLMAGTVETEAMHWV-- 292 Query: 306 REINWLGDGLFEDA-VVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQ 363 E A F C ++R Q P V+ DDG V F + + GQ Sbjct: 293 -----------EGAPPATEFDCTAQVRYRQQDEPCRVRVRDDGTLSVRFVRPQRAATPGQ 341 Query: 364 ACVFYTSDSNEARVLGGGIISGS 386 + V Y LGG +I+ + Sbjct: 342 SLVLYDGPV----CLGGAVIAST 360 >gi|225077158|ref|ZP_03720357.1| hypothetical protein NEIFLAOT_02213 [Neisseria flavescens NRL30031/H210] gi|224951506|gb|EEG32715.1| hypothetical protein NEIFLAOT_02213 [Neisseria flavescens NRL30031/H210] Length = 367 Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 124/371 (33%), Positives = 188/371 (50%), Gaps = 24/371 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++V +SGGVDSSV AALLK+ G+ + GV +Q + + C QD +DA V D Sbjct: 10 IIVGLSGGVDSSVTAALLKQQGHQISGVFMQNWEDDDNDEY---CSIKQDSFDAIAVADI 66 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + + ++ ++++ V F Y+AG TP P V CN +KF L + GAD +A Sbjct: 67 IGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLDYAIEQGADTIA 126 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R + G + + +D +DQSYFL+ QL FPLG+++K VR Sbjct: 127 TGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERAIFPLGELEKPEVRR 181 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA E L A K DS ICF+ + + + +++ G +V G+++G H G++ Y Sbjct: 182 LAEEFKLPTATKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGKVVGEHVGLMFY 239 Query: 263 TIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI--NWLGDGLFE 317 T+GQR+GLG+ GEP FV L KN V+ G L +Y + + N L L E Sbjct: 240 TLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTQSLIMNDLSFTLPE 295 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + C + R + P +D+ + + F++ + V GQ+ V Y D Sbjct: 296 RPTEGRYTCKTRYRMADAPC-TLRYLDDENIELVFDEPQWAVTPGQSAVLYDGDV----C 350 Query: 378 LGGGIISGSKR 388 LGGGII + + Sbjct: 351 LGGGIIMSTDK 361 >gi|240117158|ref|ZP_04731220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae PID1] gi|268602848|ref|ZP_06137015.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae PID1] gi|268586979|gb|EEZ51655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae PID1] Length = 383 Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 126/382 (32%), Positives = 188/382 (49%), Gaps = 24/382 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + + C Q Sbjct: 15 LRMNTTSNTSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWENDDNDE---YCSIKQ 71 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 72 DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 131 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 132 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 186 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 187 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 244 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308 +G H G++ YT+GQR+GLG+ GEP FV L KN V+ G L +Y R + Sbjct: 245 TIGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 300 Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 N L L E + C + R + P + +D+ + F++ + V GQ+ V Sbjct: 301 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCEL-CYLDDETAELVFDEPQWAVTPGQSAV 359 Query: 367 FYTSDSNEARVLGGGIISGSKR 388 Y D LGGG I + + Sbjct: 360 LYDVDI----CLGGGGIQTTDK 377 >gi|304389966|ref|ZP_07371923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326859|gb|EFL94100.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 409 Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 134/400 (33%), Positives = 191/400 (47%), Gaps = 39/400 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKGSCCAGQDVYDARRVC 80 +++V +SGGVDS+V A L+ G++V G +QL + SR S+ S + DA RV Sbjct: 8 KILVGLSGGVDSAVATARLQAAGHEVSGFFMQLESPSRPWSRPVTSAEPVDALADAHRVA 67 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + V V+D ERF V+ F +Y G TP PCV CNR +KF ++ R+ G D Sbjct: 68 DFLGVELQVWDLAERFNRVVMDSFVQAYRDGLTPNPCVHCNRFIKFGYVIERARREGFDY 127 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLE---------------RDQSYFLFATTQQQL 185 +ATGHY +RL+ + P E +DQSY L + L Sbjct: 128 VATGHY--ARLWRPGQAGLIPVGVPPTVTEGAFPDFALLRGSAIGKDQSYVLAGARAEAL 185 Query: 186 CDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 FPLGD+ K + R A +G+ +A K DS DICF+ G + R G AL G Sbjct: 186 ARAVFPLGDVTDKAATRAEAEALGIPVAGKRDSFDICFIPDGDTRGFL-RGCIGAAL-GQ 243 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEV 300 IV +G ++G H+G YT+GQRRGL + G P +VV D ++ V V PR++L V Sbjct: 244 IVDEDGAVVGSHDGAFQYTVGQRRGLHIPRPHQDGAPRYVVGTDAETNTVFVAPRQALTV 303 Query: 301 HRIYL-REINWLGD------GLFEDAVVDGFKCFVKIRSSQDPV---PVFVQRNDDG--- 347 I +NWL D G + +D ++ R+ PV V ++ DG Sbjct: 304 TEIQAGPAVNWLTDPTRLGLGATGEGKLDPVGLTIQFRAHGQPVTPQAVHLESGTDGTKL 363 Query: 348 -VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 V + GVA GQ+ V Y RV+ I+ + Sbjct: 364 QVALPPTAGVTGVAPGQSLVLYQDSPQGDRVIAQATITAT 403 >gi|307822309|ref|ZP_07652541.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacter tundripaludum SV96] gi|307736875|gb|EFO07720.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacter tundripaludum SV96] Length = 363 Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 115/373 (30%), Positives = 192/373 (51%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL G+ V G+ ++ + +++ C A +D+ DA++VCD Sbjct: 4 KVIVGMSGGVDSSVTALLLLEQGHQVTGLFMKNWEEDDGTEQ---CTAMEDLADAQQVCD 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140 + + ++ + + V F S + AG TP P + CN+ VKF L+ LGA+ Sbjct: 61 KLGIELKTVNFAAEYWDEVFEVFLSEFKAGRTPNPDILCNKHVKFKAFLNYAIEDLGAEY 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + + +D ++QSYFL+ Q+QL FP+G + K + Sbjct: 121 IATGHYARV-----SEQDCEYFLLKGLDPNKEQSYFLYTLGQKQLSRTLFPIGHLHKPEI 175 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + G + K DS ICF+ + K+ + ++R G++ GQ +G+H+G++ Sbjct: 176 RAMADKAGFANSRKKDSTGICFIGERKFTEFLQRYLP--TQPGEMRTPQGQHIGKHHGLM 233 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP--RESLEVHR-IYLREINWLG 312 YT+GQR+GLG+ A EP +V+ D ++ +IVG L +H + +++W Sbjct: 234 YYTLGQRQGLGIGGVKNAPDEPWYVLEKDLENNILIVGQGHDHPLMLHNTLEASQLDWCS 293 Query: 313 DGLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + + +C K R Q D + +D F++ + + GQ+ VFY + Sbjct: 294 N----RPLTKTIRCTAKTRYRQADQLCSLEPIGNDRCKAVFDQPQRAITPGQSVVFYDGE 349 Query: 372 SNEARVLGGGIIS 384 LGGGII Sbjct: 350 I----CLGGGIIE 358 >gi|194365696|ref|YP_002028306.1| tRNA-specific 2-thiouridylase MnmA [Stenotrophomonas maltophilia R551-3] gi|229487423|sp|B4SIN4|MNMA_STRM5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|194348500|gb|ACF51623.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Stenotrophomonas maltophilia R551-3] Length = 380 Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 133/393 (33%), Positives = 190/393 (48%), Gaps = 32/393 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V +SGGVDSSV A L + G V G+ +Q + A G C A D DA VC Sbjct: 5 RVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNW----ADDGSGECRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + V F + YAAG TP P V CNR VKF L R+LGA+ + Sbjct: 61 LLGIPFHFRDFSNEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R V G + ++ R D +DQSYFL QQQL FP+GD++K +R Sbjct: 121 ATGHYAR----VAQRGH-QWLLLRGADRSKDQSYFLHQLGQQQLAATLFPIGDLEKTDLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNGQILGRHNGII 260 +AR++ L K DS ICF+ + + + + R A G I+ +G ++ H G+ Sbjct: 176 RIARDVSLPTHAKKDSTGICFIGERDFREFLGRYLP--AKPGQILDPADGSVIAEHPGVF 233 Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RESLEV--HRIYLREINWLG 312 +T+GQR GL + P +VV D S+ + V R+S + +R+ +W+ Sbjct: 234 YFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSTWMLSNRLRSETAHWIA 293 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 F+C + R Q P V+ DDG V V F + + V GQ+ V Y D Sbjct: 294 GA----PPARRFECTAQTRYRQPDEPCTVEVLDDGSVLVTFARPQRAVTPGQSLVLYDGD 349 Query: 372 SNEARVLGGGIISGSKRSDAVEESLLSVIGDEF 404 LGG +I+ +DA E L F Sbjct: 350 V----CLGGAVIAA---TDAPLEQRLRTTPSPF 375 >gi|325299477|ref|YP_004259394.1| tRNA-specific 2-thiouridylase mnmA [Bacteroides salanitronis DSM 18170] gi|324319030|gb|ADY36921.1| tRNA-specific 2-thiouridylase mnmA [Bacteroides salanitronis DSM 18170] Length = 356 Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 133/373 (35%), Positives = 185/373 (49%), Gaps = 34/373 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DA 76 KD RV++ MSGG DSSV A LL+ GY+V GVT + Y G Y DA Sbjct: 5 KDKRVLLGMSGGTDSSVAAILLQDAGYEVTGVTFRFYEKE-----------GDTAYLDDA 53 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R +C +++ H V+D E FR +I F Y G TP+PC CN +K+ L + + Sbjct: 54 RELCSRLHIPHIVYDVREVFRKHIITYFIDEYLKGRTPVPCTLCNNRLKWPLLKRLADER 113 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 +A+GHY++ R ++G+ R + + D ++DQS+FL+ Q + + PLG++ Sbjct: 114 EIPFIASGHYVQKR-FIGE----RWHIVQGADPDKDQSFFLWGLPQDIIARMVLPLGNLT 168 Query: 197 KESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKR-INAGIALEGDIVHLNGQILG 254 K VR++A E G L +A K DS +CF G Y ++R AG + G I +G Sbjct: 169 KTRVREIASERGFLKVASKRDSLGVCFC-PGDYRTYLRRHTQAGAIVPGPIFDERRNYMG 227 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG-PRESLEVHRIYLREINWLGD 313 H G YTIGQRRGLGV + LFV + + VI+ +LE YL +W Sbjct: 228 THEGYPFYTIGQRRGLGVYRNKALFVKEIIPEENAVILADDLRALEHTAFYLS--HW--- 282 Query: 314 GLFEDAVVDGFKC--FVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 L VV G + VKIR Q V D+ + V + +A GQA FY Sbjct: 283 HLPAPEVVLGSQAELIVKIRYRKQANRCSVVLTPDNRLQVRLHEPLASIACGQAAAFYRG 342 Query: 371 DSNEARVLGGGII 383 D VLGGGII Sbjct: 343 DI----VLGGGII 351 >gi|86133287|ref|ZP_01051869.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Polaribacter sp. MED152] gi|85820150|gb|EAQ41297.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Polaribacter sp. MED152] Length = 395 Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 124/400 (31%), Positives = 199/400 (49%), Gaps = 44/400 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDSSV A LLK GY+VIG+ ++ ++ + C +D DA V + Sbjct: 3 RVVVGLSGGVDSSVTAHLLKEQGYEVIGLFMKNWHDDSVT-ISNECPWLEDSNDAMIVAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + V D E+++ ++ + Y G TP P V CNR +KF + + +LGAD + Sbjct: 62 KLGIPFQVVDLSEQYKERIVDYMFAEYEKGRTPNPDVLCNREIKFDVFMDIALKLGADYV 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + DD +++ D +DQSYFL +QQQL FP+G++ K VR Sbjct: 122 ATGHYCRKAEEIIDDKPVYKLLAGK-DNNKDQSYFLCQLSQQQLAKALFPIGELTKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFV---------QQ-------------GKYFDVVKRINAGI 239 ++A+E L A+K DSQ +CF+ QQ + D +K Sbjct: 181 EIAKEADLITAEKKDSQGLCFIGKVRLPEFLQQKLQPKKGDIVTIPSDFSDYIKEQPKFE 240 Query: 240 ALEGDIVHL---------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSR 289 + E ++ +L +G+++G H G +T GQR+GL V E L+V+ D + Sbjct: 241 SKEEELKYLSTKFTYNKTDGKVVGIHQGAHYFTKGQRKGLNVGGTKEALYVIETDVEENV 300 Query: 290 VIVGP-RESLEVHRIYL----REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN 344 + G ++ ++R L EI+W+ + L + + +IR Q + + Sbjct: 301 IYTGEGKQHPGLYRNVLFVANEEIHWIREDLTLKP-SETMQVEARIRYRQVLEQATLYKV 359 Query: 345 DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 D G+YV+FE + + GQ +Y ++ +LG G+IS Sbjct: 360 DSGLYVEFENKQSAIQEGQFVAWYKNE----ELLGSGVIS 395 >gi|323128291|gb|ADX25588.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 373 Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 134/377 (35%), Positives = 196/377 (51%), Gaps = 25/377 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V Sbjct: 6 NTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 63 ADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + + +DG M R D +DQ+YFL +Q+QL FPLG ++K Sbjct: 123 YVATGHYAQVKR--DEDGTVH--MLRGADNGKDQTYFLSQLSQKQLQKTLFPLGHLQKPE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H G+ Sbjct: 179 VRQIAERAGLATAKKKDSTGICFIGEKNFKTFLSQYLP--AQKGRMMTVDGRDMGEHAGL 236 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + YTIGQR GLG+ +P FVV D + + + VG ESL + +++ Sbjct: 237 MYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASVVHFT 296 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + + E+ ++ C K R Q V V D V F + + + GQA VFY + Sbjct: 297 RE-MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVVFAEPQRAITPGQAVVFYDGE 352 Query: 372 SNEARVLGGGIISGSKR 388 LGGG+I + R Sbjct: 353 ----ECLGGGMIDMAYR 365 >gi|251783539|ref|YP_002997844.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242392171|dbj|BAH82630.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 379 Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 134/377 (35%), Positives = 196/377 (51%), Gaps = 25/377 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V Sbjct: 12 NTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAV 68 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 69 ADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGAD 128 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + + +DG M R D +DQ+YFL +Q+QL FPLG ++K Sbjct: 129 YVATGHYAQVKR--DEDGTVH--MLRGADNGKDQTYFLSQLSQKQLQKTLFPLGHLQKPE 184 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H G+ Sbjct: 185 VRQIAERAGLATAKKKDSTGICFIGEKNFKTFLSQYLP--AQKGRMMTVDGRDMGEHAGL 242 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + YTIGQR GLG+ +P FVV D + + + VG ESL + +++ Sbjct: 243 MYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASVVHFT 302 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + + E+ ++ C K R Q V V D V F + + + GQA VFY + Sbjct: 303 RE-MPEEFTLE---CTAKFRYRQPDSKVTVHVKGDKAEVVFAEPQRAITPGQAVVFYDGE 358 Query: 372 SNEARVLGGGIISGSKR 388 LGGG+I + R Sbjct: 359 ----ECLGGGMIDMAYR 371 >gi|206896038|ref|YP_002247576.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coprothermobacter proteolyticus DSM 5265] gi|206738655|gb|ACI17733.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coprothermobacter proteolyticus DSM 5265] Length = 347 Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 122/370 (32%), Positives = 183/370 (49%), Gaps = 26/370 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ V +SGG+DS+V LK +G+ V V L + + ++ +CC+ A+RV Sbjct: 1 MKIAVGLSGGIDSTVSLLRLKEEGHHVTAVFLNMLPEGEYQEK--TCCSVDSQLLAKRVA 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 V V+D E F+ VI F + G TP PCV CNR VK + + Q G D Sbjct: 59 MNQGVPFEVWDLTETFQKHVINIFKAMVKKGLTPNPCVFCNRCVKIGAFVELAMQKGFDA 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R +G + + +D +DQSY L +Q L + FPLG++ +E V Sbjct: 119 VATGHYARQR-----EGN----LYKAIDSWKDQSYMLALVEKQVLAKVLFPLGELTREEV 169 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 A G+ +S SQDICF+ G + + + + G I+ G I+G H G Sbjct: 170 ISYAHSHGIKHVPRS-SQDICFMPHGGMEQFITQNISEVTKPGPII-FRGHIIGEHRGYP 227 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YT+GQRRGLGVA EPL+V +D S+ V VG E L + + +N A+ Sbjct: 228 YYTVGQRRGLGVAHREPLYVKKIDPISNTVHVGTSEELFSEHMTVVMMNQF------SAL 281 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + +KIR VP FV+++++ + V F + + GQ V Y D +V Sbjct: 282 TRQVE--IKIRYRAHSVPAFVEQSNEPILSVRFSQPVRAITPGQIAVAYEGD----KVQW 335 Query: 380 GGIISGSKRS 389 GII ++ + Sbjct: 336 AGIILNARTT 345 >gi|146300143|ref|YP_001194734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Flavobacterium johnsoniae UW101] gi|205816863|sp|A5FHA9|MNMA_FLAJO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|146154561|gb|ABQ05415.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Flavobacterium johnsoniae UW101] Length = 395 Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 124/403 (30%), Positives = 203/403 (50%), Gaps = 50/403 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDSSV A LL++ GY+VIG+ ++ ++ + C +D DA V + Sbjct: 3 RVVVGLSGGVDSSVAAYLLQQQGYEVIGLFMKNWHDDSVT-ISNECPWLEDSNDALLVAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + D E ++ ++ + Y G TP P V CNR +KF + + LGAD + Sbjct: 62 KLGIPFQTVDLSEEYKEKIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMKIALSLGADYV 121 Query: 142 ATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY +S + V DGK + D+ +DQSYFL +Q+QL FP+G + K V Sbjct: 122 ATGHYCQKSEIEV--DGKTVYQLIAGNDVNKDQSYFLCQLSQEQLSKALFPIGALTKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFV---------------QQGKYFDVVK-------RINAG 238 R++A EM L A+K DSQ +CF+ ++G + K AG Sbjct: 180 REIAAEMELVTAEKKDSQGLCFIGKVRLPEFLQQKLQPKEGTIVQIDKNDPIYNVEKQAG 239 Query: 239 IALEGDI----VHLN-----GQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSS 288 ++LE ++ LN G+++G+H G +T+GQR+GL V +PLFV+ D +++ Sbjct: 240 LSLEEELKIESQKLNYRPEMGKVMGKHQGAHYFTVGQRKGLNVGGTTDPLFVIATDVDTN 299 Query: 289 RVIVG-----PRESLEVHRIYLREINWLGDGLFEDAVVDG--FKCFVKIRSSQDPVPVFV 341 + G P + + E++W+ + L + +G + +IR Q + Sbjct: 300 TIYTGLTSNHPGLFKKALFVGNSEVHWVREDL---KLKEGEQMEVMARIRYRQPLQKATL 356 Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + +G+YV F++ + + GQ +Y E ++G G+IS Sbjct: 357 HQFANGMYVHFDEPQSAITEGQFVAWYL----ENELVGSGVIS 395 >gi|255690530|ref|ZP_05414205.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides finegoldii DSM 17565] gi|260623984|gb|EEX46855.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides finegoldii DSM 17565] Length = 361 Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 125/387 (32%), Positives = 191/387 (49%), Gaps = 59/387 (15%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV+V MSGG+DS+ +L+ GY+++GVT++++ G + DAR Sbjct: 4 RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + HYV D F+ ++ F Y G TP PCV CN KF L +L Sbjct: 50 LAARMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLDC 109 Query: 139 DVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 D +ATGHY R +Y+ GDD K +DQSYFL+ Q L FP Sbjct: 110 DWIATGHYSRLEEKNGHIYIIAGDDDK------------KDQSYFLWRLGQDVLRRCIFP 157 Query: 192 LGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVH 247 LG K VR+ E G + K +S ++CF+ +G Y D ++ + E G V+ Sbjct: 158 LGAYTKIKVREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDSEIGPGWFVN 216 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 G LG+H G YTIGQR+GL +A+G+P +V+ ++ + V++G E L+ + Sbjct: 217 SEGVKLGQHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKTDYMLAE- 275 Query: 308 INWLGDGLFEDAVVDG---FKC---FVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360 +D +VD F+C V+IR P+ V+R +DG + V F ++ +A Sbjct: 276 ---------QDKIVDEQELFQCENLTVRIRYRSRPLACRVRRLEDGRLLVRFLETASAIA 326 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSK 387 GQ+ VFY RVLGG I+ + Sbjct: 327 PGQSAVFYDG----KRVLGGAFIASQR 349 >gi|134093604|ref|YP_001098679.1| tRNA-specific 2-thiouridylase MnmA [Herminiimonas arsenicoxydans] gi|205816908|sp|A4G213|MNMA_HERAR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|133737507|emb|CAL60550.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Herminiimonas arsenicoxydans] Length = 372 Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 127/384 (33%), Positives = 189/384 (49%), Gaps = 31/384 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVV+ MSGGVDSSV A LLK GY+VIG+ ++ + S+ C QD DA V D Sbjct: 5 RVVIGMSGGVDSSVSAWLLKEQGYEVIGLFMKNWEDDDDSEY---CSTRQDWIDAASVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + V ++ +++ V F Y AG TP P V CN +KF L LGAD++ Sbjct: 62 VVGVDIEAVNFAAEYKDRVFAEFLREYEAGRTPNPDVLCNAEIKFKAFLDHAMLLGADMI 121 Query: 142 ATGHYIRSR-LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY R R + G D + +++ + +D +DQSYFL Q QL FPLG+++K V Sbjct: 122 ATGHYARVREVTSGPDAGQVQLL-KAVDASKDQSYFLHRLNQAQLSKTLFPLGEIRKTEV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++ L A K DS ICF+ + + + + R + G + +G I+G H G+ Sbjct: 181 RKIAEQLQLPNASKKDSTGICFIGERPFREFLNRYLS--YQPGPMKTPDGTIVGEHVGLS 238 Query: 261 NYTIGQRRGLGV----------AMGEPLFVVYLD-KNSSRVIVGPRES--LEVHRIYLRE 307 YT+GQR+G+G+ P +V D N++ IV + L + + Sbjct: 239 FYTLGQRKGIGLGGMKTHKNTDGNSGPWYVARKDVANNTLYIVQGHDHPWLLSSALSAGQ 298 Query: 308 INWL-GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 ++W+ G E+ V K R Q V D + + F+ + V GQ+ V Sbjct: 299 MSWVAGRAPSEELVA------AKTRYRQADVACSQHATADNLALAFDTPQWAVTPGQSAV 352 Query: 367 FYTSDSNEARVLGGGIISGSKRSD 390 Y D LGGGII+ S ++ Sbjct: 353 LYQGDV----CLGGGIITASTLTE 372 >gi|224023564|ref|ZP_03641930.1| hypothetical protein BACCOPRO_00267 [Bacteroides coprophilus DSM 18228] gi|224016786|gb|EEF74798.1| hypothetical protein BACCOPRO_00267 [Bacteroides coprophilus DSM 18228] Length = 378 Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 125/371 (33%), Positives = 186/371 (50%), Gaps = 20/371 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD RV+V MSGG+DSS V +L+ GY+V+GVT++ ++ G +V +A+ Sbjct: 5 KDKRVLVGMSGGIDSSAVCIMLQEQGYEVVGVTMRTWDVPSHFSTPGQE-QPDEVLEAQA 63 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + H+V D E FR ++ F Y G TP PCV CN K L + Sbjct: 64 LAARLGIEHHVADVREEFRQVIVKYFIDEYMRGRTPNPCVMCNPLFKERILCEWADRTDC 123 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY + +D R + D +DQSYFL+ Q+ L + FPLG M K+ Sbjct: 124 AWIATGHYCQL-----EDRNGYRYILTGDDPTKDQSYFLWKLPQEILRRMIFPLGGMTKQ 178 Query: 199 SVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKR----INAGIALEGDIVHLNGQIL 253 VR E G + A +S +ICF+ + Y D ++ I+ I G V G L Sbjct: 179 EVRAYLAEKGFEAKARGGESMEICFIDK-DYRDFLREHCPDIDERIG-PGWFVDSKGLKL 236 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+H G YTIGQRRGL +A+G+P +V+ ++ + V++G E L + + ++N Sbjct: 237 GQHKGFAYYTIGQRRGLDIALGKPAYVLKINPAKNTVMLGDAEQLNAEYMLVEDVN--VA 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 L E ++ RS P V + +D+ + V FE + GQ+ VFY D N Sbjct: 295 NLEELLTCPSLSVRIRYRSRAIPCRV-ITLDDNRLLVKFEGPASAITPGQSAVFY--DGN 351 Query: 374 EARVLGGGIIS 384 RVLGGG I+ Sbjct: 352 --RVLGGGFIA 360 >gi|21911376|ref|NP_665644.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes MGAS315] gi|28896748|ref|NP_803098.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes SSI-1] gi|25091447|sp|Q8K5H5|MNMA_STRP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|21905592|gb|AAM80447.1| putative tRNA-(5-methylaminomethyl-2-thiouridylate) [Streptococcus pyogenes MGAS315] gi|28812002|dbj|BAC64931.1| putative tRNA-(5-methylaminomethyl-2- thiouridylate) [Streptococcus pyogenes SSI-1] Length = 373 Score = 179 bits (454), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 135/369 (36%), Positives = 191/369 (51%), Gaps = 25/369 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V D Sbjct: 9 VVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWHD---TDEFGVCTATEDYKDVAAVADQ 65 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD +A Sbjct: 66 IGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYVA 125 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K VR+ Sbjct: 126 TGHYAQ----VKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEVRE 181 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H G++ Y Sbjct: 182 IAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLMYY 239 Query: 263 TIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314 TIGQR GLG+ +P FVV D + + + VG E+L + + I++ + Sbjct: 240 TIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTREM 299 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 E F+C K R Q V V D V F + + + GQA VFY D E Sbjct: 300 PEEFT----FECTAKFRYRQPDSHVRVHVRGDKAEVVFAEPQRAITPGQAVVFY--DGKE 353 Query: 375 ARVLGGGII 383 LGGG+I Sbjct: 354 C--LGGGMI 360 >gi|308389689|gb|ADO32009.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Neisseria meningitidis alpha710] Length = 367 Score = 179 bits (453), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 129/382 (33%), Positives = 190/382 (49%), Gaps = 26/382 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++ NP + ++V +SGGVDSSV AALLK+ GY V GV +Q + + C Q Sbjct: 1 MNTTANPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 55 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D I + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 56 DSFDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 115 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 116 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 170 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 171 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 228 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308 +G H G++ YT+GQR+GLG+ GEP FV L KN V+ G L +Y R + Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 284 Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 N L L E + C + R + P + +D+ + F++ + V GQ+ V Sbjct: 285 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCEL-RYLDDETAELVFDEPQWAVTPGQSAV 343 Query: 367 FYTSDSNEARVLGGGIISGSKR 388 Y D LGGGII + + Sbjct: 344 LYEGDV----CLGGGIIQSTDK 361 >gi|241758623|ref|ZP_04756737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria flavescens SK114] gi|241321134|gb|EER57330.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria flavescens SK114] Length = 367 Score = 179 bits (453), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 121/367 (32%), Positives = 184/367 (50%), Gaps = 16/367 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++V +SGGVDSSV AALLK+ G+ + GV +Q + + C QD +DA V D Sbjct: 10 IIVGLSGGVDSSVTAALLKQQGHQISGVFMQNWEDDDNDEY---CSIKQDSFDAIAVADI 66 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + + ++ ++++ V F Y+AG TP P V CN +KF L + GAD +A Sbjct: 67 IGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLDYAIEQGADTIA 126 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R + G + + +D +DQSYFL+ QL FPLG+++K VR Sbjct: 127 TGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERAIFPLGELEKPEVRR 181 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA E L A K DS ICF+ + + + +++ G +V G+++G H G++ Y Sbjct: 182 LAEEFKLPTATKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGKVVGEHVGLMFY 239 Query: 263 TIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 T+GQR+GLG+ GEP FV D + +IV + +N L L E Sbjct: 240 TLGQRKGLGIGGAGEPWFVAAKDLTQNELIVVQGHDHPLLYTQSLVMNDLSFTLPERPKE 299 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + C + R + P +D+ V + F++ + V GQ+ V Y D LGGG Sbjct: 300 GRYTCKTRYRMADAPC-TLRYLDDETVELVFDEPQWAVTPGQSAVLYDGDV----CLGGG 354 Query: 382 IISGSKR 388 II + + Sbjct: 355 IIMSTDK 361 >gi|34557952|ref|NP_907767.1| tRNA-specific 2-thiouridylase MnmA [Wolinella succinogenes DSM 1740] gi|81653445|sp|Q7M8I9|MNMA_WOLSU RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|34483670|emb|CAE10667.1| TRNA METHYLTRANSFERASE [Wolinella succinogenes] Length = 345 Score = 179 bits (453), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 125/372 (33%), Positives = 193/372 (51%), Gaps = 43/372 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+V + MSGG+DSS A LL+ G++V+G+ L+L+++ Q++ + +V Sbjct: 1 MKVALLMSGGIDSSYSAYLLQEAGHEVVGIYLKLHDN--------DLKHAQNIQNIEKVS 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + ++FD +E F+ V F SY G TP PC CN +KF L +LG + Sbjct: 53 QKLGIETHIFDAKELFKKHVYDYFVDSYQKGLTPNPCAFCNPFMKFGFALERALELGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R K RI D +DQSYFLF + + L FPLGD K + Sbjct: 113 IATGHYARV--------KEGRIQ-EAKDQSKDQSYFLFGLKESVISRLIFPLGDRLKSEI 163 Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 + A E +G + +SQ+ICFV + Y D+++R + + +G + +G+++G H Sbjct: 164 KPEALEILPWLG-TLESYKESQEICFV-ESDYIDILRR-HFPVEQKGIVQDSSGRVVGEH 220 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G + YTIG+R+G V +P +V+ +D +R+IVG +E L + +Y Sbjct: 221 KGYMQYTIGKRKGFTVKGAHDPHYVLSIDPKENRLIVGSKEELAKNVVYADPF------- 273 Query: 316 FEDAVVDGFKCF---VKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYTSD 371 A+ +GF+ F VKIR V V+ ++ G V K +V GVA+GQA V Y D Sbjct: 274 ---ALPEGFEHFEGEVKIRYRSLKVKAEVRLDESGRLVAHLKEKVYGVANGQALVLYAED 330 Query: 372 SNEARVLGGGII 383 V+GGG I Sbjct: 331 ----LVIGGGWI 338 >gi|329964462|ref|ZP_08301516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides fluxus YIT 12057] gi|328524862|gb|EGF51914.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides fluxus YIT 12057] Length = 357 Score = 179 bits (453), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 122/367 (33%), Positives = 183/367 (49%), Gaps = 28/367 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV++ MSGG DSSV A L+ GY+V GVT + Y A+ + DAR + Sbjct: 13 RVLLGMSGGTDSSVAAMRLQDAGYEVTGVTFRFYEKDGATNY---------LDDARSLAS 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H +D E FR+ +I F Y AG TP+PC CN +K++ L + + G + Sbjct: 64 RLGIEHVTYDAREMFRSRIIRYFIDEYLAGHTPVPCTLCNNELKWALLAKIADEKGIYWV 123 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 +TGHY+R L G + M +D ++DQ++FL+ Q + + P+GD+ K R Sbjct: 124 STGHYVRKVLQGG-----KYYMAPAVDKDKDQTFFLWGLKQDIMRRMLLPMGDITKVEAR 178 Query: 202 DLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDIVHLNGQILGRHNG 258 A+ G ++A K DS +CF Y ++R L +G + NG+ LG H G Sbjct: 179 AFAKARGFHEVATKKDSIGVCFCPL-DYRSFLQREADVRRLPGKGKFIDENGRFLGWHEG 237 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 YTIGQRRGLG+ M + +FV + + V++ P SL ++L+ N L ED Sbjct: 238 YPFYTIGQRRGLGIQMNKAVFVKEISVEKNEVVLAPLSSLYKQEMWLKAWN-----LVED 292 Query: 319 A-VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + V + VKIR + V G ++V + +A+GQA FY D Sbjct: 293 SRVFCAEEVIVKIRYRKQSNRCRVTLTAGGLLHVRLIEPLESIATGQAAAFYAKD---GL 349 Query: 377 VLGGGII 383 +LGGGII Sbjct: 350 LLGGGII 356 >gi|254880932|ref|ZP_05253642.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 4_3_47FAA] gi|294775009|ref|ZP_06740538.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides vulgatus PC510] gi|319639940|ref|ZP_07994667.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 3_1_40A] gi|254833725|gb|EET14034.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 4_3_47FAA] gi|294451053|gb|EFG19524.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides vulgatus PC510] gi|317388218|gb|EFV69070.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 3_1_40A] Length = 375 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 122/386 (31%), Positives = 189/386 (48%), Gaps = 40/386 (10%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N +D RV+V MSGG+DSS +L+ GY+V+GVT++ ++ G DV +A Sbjct: 2 NNRDKRVLVGMSGGIDSSATCIMLQEQGYEVVGVTMRTWDVPSRFSTPGQD-EPDDVLEA 60 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + + + + H+V D E F+ ++ F Y G TP PCV CN K L Q Sbjct: 61 RALAERLGIEHHVADVREEFKQIIVKHFIDEYMQGRTPNPCVLCNPLFKERILCEWADQT 120 Query: 137 GADVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 ++TGHY R +LY+ GDD +DQSYFL+ Q+ L Sbjct: 121 NCAHISTGHYCRLEERKGKLYIVAGDDQT------------KDQSYFLWKLPQEILQRFL 168 Query: 190 FPLGDMKKESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDI 245 FPLG K+ VR+ R+ G + A +S +ICF+ +G Y + ++ I + G Sbjct: 169 FPLGTYTKQEVREYLRQKGFEAKARGGESMEICFI-EGDYRNFLRSQCPDIDTQVGPGWF 227 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 V+ G +G+H G YTIGQR+GL +A+G P +V+ ++ + V++G E L+ + + Sbjct: 228 VNSKGVKIGQHKGFPYYTIGQRKGLEIALGHPAYVLRINAEKNTVMLGDAEELKAEYMLV 287 Query: 306 REINWLGDGLFEDAVVDGFKC---FVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVAS 361 + + + D +C V+IR P+P V D+ + V F +A Sbjct: 288 EDYHI-------TEMQDLLQCKDLSVRIRYRSKPIPCQVLVLDEKQLLVRFLSEASAIAP 340 Query: 362 GQACVFYTSDSNEARVLGGGIISGSK 387 GQ+ VFY RVLGG I+ + Sbjct: 341 GQSAVFYEG----KRVLGGAFIASQR 362 >gi|319637829|ref|ZP_07992595.1| tRNA-specific 2-thiouridylase mnmA [Neisseria mucosa C102] gi|317400984|gb|EFV81639.1| tRNA-specific 2-thiouridylase mnmA [Neisseria mucosa C102] Length = 367 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 120/367 (32%), Positives = 184/367 (50%), Gaps = 16/367 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++V +SGGVDSSV AALLK+ G+ + GV +Q + + C QD +DA V D Sbjct: 10 IIVGLSGGVDSSVTAALLKQQGHQISGVFMQNWEDDDNDEY---CSIKQDSFDAIAVADI 66 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + + ++ ++++ V F Y+AG TP P V CN +KF L + GAD +A Sbjct: 67 IGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLDYAIEQGADTIA 126 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R + G + + +D +DQSYFL+ QL FPLG+++K VR Sbjct: 127 TGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERAIFPLGELEKPEVRR 181 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA E L A K DS ICF+ + + + +++ G +V G+++G H G++ Y Sbjct: 182 LAEEFKLPTATKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGKVVGEHVGLMFY 239 Query: 263 TIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 T+GQR+GLG+ GEP FV D + +IV + +N L L E Sbjct: 240 TLGQRKGLGIGGAGEPWFVAAKDLTQNELIVVQGHDHPLLYTQSLVMNDLSFTLPERPKE 299 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + C + R + P +D+ + + F++ + V GQ+ V Y D LGGG Sbjct: 300 GRYTCKTRYRMADAPC-TLRYLDDETIELVFDEPQWAVTPGQSAVLYDGDV----CLGGG 354 Query: 382 IISGSKR 388 II + + Sbjct: 355 IIMSTDK 361 >gi|329946338|ref|ZP_08293905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinomyces sp. oral taxon 170 str. F0386] gi|328527314|gb|EGF54312.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinomyces sp. oral taxon 170 str. F0386] Length = 387 Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 195/387 (50%), Gaps = 27/387 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ A+SGGVDS+V AA G++V+GV + L +R + R GS CC+ +D DAR Sbjct: 1 MRVLAALSGGVDSAVAAARAVDAGHEVVGVHMALTRNRSQT-RSGSRGCCSIEDSADARW 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + YV+D E F V+ F Y AG TP PCV CN VKF LL LG Sbjct: 60 AAQILGIPFYVWDLSEEFEERVVADFLDEYRAGRTPNPCVRCNERVKFDALLERALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRR-----IMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 D +ATGHY +RL G R + R +D +DQSY L + ++ L PLG Sbjct: 120 DAVATGHY--ARLSGGAASGRPGDTNGLTLRRAVDAAKDQSYVLAVSGREGLARALLPLG 177 Query: 194 DM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 D K VR A GL +A K DS DICFV G + R A EG +V +G++ Sbjct: 178 DASSKAQVRAEAEARGLPVASKPDSYDICFVADGDTRGFLTRSLG--ASEGAMVSPDGEV 235 Query: 253 LGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHR------ 302 LG H G +T+GQR+GLG++ G P +V+ ++ V+VGP E L Sbjct: 236 LGTHQGYFGFTVGQRKGLGLSRPADDGRPRYVIETRPATNEVVVGPEELLSRTTVDGDGL 295 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV--GVA 360 + L E L G + V + V++R+ PV V+ ++ + E + GVA Sbjct: 296 VLLAEPEPL-TGDSDTPTVGWQEGSVQVRAHGRPVSARVRVDEAAGLLRAELATPLRGVA 354 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSK 387 +GQ+ V Y +N +VL ++ ++ Sbjct: 355 AGQSLVVY-GGTNGDQVLAQATVTSAQ 380 >gi|113869080|ref|YP_727569.1| tRNA-specific 2-thiouridylase MnmA [Ralstonia eutropha H16] gi|123133633|sp|Q0K720|MNMA_RALEH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|113527856|emb|CAJ94201.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia eutropha H16] Length = 361 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 182/371 (49%), Gaps = 26/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ + S+ C QD D V D Sbjct: 7 RVVVGMSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSEY---CSTRQDWLDVVSVAD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I V ++ +++ V F Y+AG TP P V CN +KF L LGA+ + Sbjct: 64 LIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 123 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R + R + + +D +DQSYFL Q QL FPLG++ K VR Sbjct: 124 ATGHYARVR----QNAAGRFELLKALDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKTRVR 179 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A E+GL A K DS ICF+ + + D + R G + G+++G H G+ Sbjct: 180 EIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPEGKVVGEHIGLAF 237 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313 YT+GQR+G+G+ G+ +V D N+ V+ G L + +++W Sbjct: 238 YTLGQRKGIGLGGSREGNGDAWYVARKDMANNTLYVVQGHDHPWLLTPVLTASDLSW--- 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDS 372 + + G K R Q VQ D D + + F +++ V GQ+ V Y D Sbjct: 295 -VAGEPPAAGAAMAAKTRYRQSDAACTVQAVDGDALTLRFAEAQWAVTPGQSAVLYDGDI 353 Query: 373 NEARVLGGGII 383 LGGGII Sbjct: 354 ----CLGGGII 360 >gi|256830660|ref|YP_003159388.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Desulfomicrobium baculatum DSM 4028] gi|256579836|gb|ACU90972.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Desulfomicrobium baculatum DSM 4028] Length = 347 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 115/364 (31%), Positives = 178/364 (48%), Gaps = 28/364 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 + +A+SGG DS + LL+ G +V+ V + + + + +C Sbjct: 3 KTAIALSGGADSLMSLLLLRETGAEVMAVHARFLGADDEALHE----------RLHGLCA 52 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + V ++ D F VI PF +Y +G TP PC CN +KF LL R+LGAD L Sbjct: 53 KLRVPFHLVDLRREFEELVIAPFVRAYQSGLTPNPCATCNPAIKFGLLLDRVRELGADRL 112 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +RL G + R +D ++DQSYFL +++ + FPL D K +VR Sbjct: 113 ATGHY--ARLARTPHGA---ALYRGLDADKDQSYFLSRVPRERFEQVIFPLADWTKSAVR 167 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 E GL +SQ++CF+ Y D ++ N + G I +G +LGRH G+ N Sbjct: 168 QALAERGLTPPAGRESQEVCFIPS-DYRDFLRERNVRLGGPGPITLADGTVLGRHAGLWN 226 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVH-RIYLREINWLGDGLFEDA 319 +T+GQR+GLG+A +PL+V D +R++VGP+ E+L R + + W + L+ Sbjct: 227 HTLGQRKGLGIAYSQPLYVTGKDFVQNRLLVGPKSETLSSGCRTGIPNLLWPPE-LWPGE 285 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 ++ + Q P P V + G+ + F + GQ Y S E +VL Sbjct: 286 IL------AQTIYRQRPEPARVSVDQTGMTITFPEPRPMPTPGQVAAVY---SAEGQVLA 336 Query: 380 GGII 383 G +I Sbjct: 337 GAVI 340 >gi|71893779|ref|YP_279225.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma hyopneumoniae J] gi|123645587|sp|Q4A9Q7|MNMA_MYCHJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205822182|sp|Q600M2|MNMA_MYCH2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71851906|gb|AAZ44514.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase [Mycoplasma hyopneumoniae J] gi|312601389|gb|ADQ90644.1| tRNA-specific 2-thiouridylase mnmA [Mycoplasma hyopneumoniae 168] Length = 372 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 116/368 (31%), Positives = 193/368 (52%), Gaps = 38/368 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--------RKASKRKGSCCAGQDV 73 ++VV +SGGVDS+V A LLK+ G++VI V ++ ++S +K K C QD Sbjct: 3 KIVVGLSGGVDSAVSAYLLKKAGHNVIAVFMRNWDSSLNNDFLGKKNEKNFTICPQEQDW 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ V +N+ + D+ + + + V Y +G TP P + CN+ +KF L Sbjct: 63 LDAKVVAKQLNIPIFRIDFIKEYWDEVFSDLILKYQSGLTPNPDILCNKNIKFKHFLDYA 122 Query: 134 RQL-GADVLATGHYIRS---RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 +++ AD +A GHY ++ LY G D +DQSYFL ++ QL Sbjct: 123 QKVHNADFIAMGHYAKTDNGNLYAGADS------------LKDQSYFLGQLSKSQLQKTI 170 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 FPLG++ K VR +A E+GL A K DS ICF+ + K+ D ++ N A G+I+ ++ Sbjct: 171 FPLGNLHKSEVRKIANELGLINAKKKDSTGICFIGERKFTDFLQ--NYIPAQPGNIIDIS 228 Query: 250 G-QILGRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304 ++LG+H GI+ +TIGQR+G G++ M EP FVV + + V P ++ LE + Sbjct: 229 TKKVLGKHIGIMYFTIGQRKGFGLSGMKEPYFVVGHNLKEKILYVSPQSEKKWLESDSLM 288 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363 + N+L + +D K R Q+ +P+ +++ D+ ++ ++K + + GQ Sbjct: 289 AKNANFLSENFRN---LDNLSA--KFRYRQEAIPIKIEKIQDNSFWISYQKYQ-AITPGQ 342 Query: 364 ACVFYTSD 371 V Y + Sbjct: 343 QVVIYHQN 350 >gi|237753391|ref|ZP_04583871.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter winghamensis ATCC BAA-430] gi|229375658|gb|EEO25749.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter winghamensis ATCC BAA-430] Length = 347 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 118/371 (31%), Positives = 193/371 (52%), Gaps = 36/371 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++ MSGGVDSS A LL++ GY V GV L+L++ + V + + Sbjct: 3 KVLLLMSGGVDSSYCAYLLQKQGYLVYGVYLKLHDKEEKH--------AYFVRNIEKCAK 54 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +N+ + + D E F+ V F SY G TP PC CN VKF + ++G D + Sbjct: 55 HLNIEYSIIDERELFKEKVYDYFVESYKKGLTPNPCAMCNPFVKFGIAFDLADKMGFDYV 114 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + + DGK + + D+ +DQSYFLF Q+ + + FPLGD KE ++ Sbjct: 115 ATGHYAQIK-----DGK----VAQGADIHKDQSYFLFGLKQEWISRIIFPLGDKIKEEIK 165 Query: 202 DLA-REMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +A +E+ + DSQ+ICFV+ Y DV+ + + +G+++ G ++G H G Sbjct: 166 PIALKELSWLGTLETYKDSQEICFVENS-YIDVLNK-HYKTESKGNVLDAQGNVIGTHKG 223 Query: 259 IINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW-LGDGLF 316 + YTIG+R+G + P +V+ ++ + ++VG +E+L + R N+ L F Sbjct: 224 YMQYTIGKRKGFEIKGALTPHYVLKINPQDNTIVVGNKEALATKEV--RATNFSLPKEYF 281 Query: 317 EDAVVDGFKCFVKIR----SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 +D + +C VKIR ++ + + + + + ++ GVASGQA V Y Sbjct: 282 KDN--NTLECEVKIRYKSHKAKARIELIKEAQKEVIVAHLQEPVYGVASGQALVLYDG-- 337 Query: 373 NEARVLGGGII 383 ++VLGGG I Sbjct: 338 --SKVLGGGFI 346 >gi|254283074|ref|ZP_04958042.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma proteobacterium NOR51-B] gi|219679277|gb|EED35626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma proteobacterium NOR51-B] Length = 363 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 123/375 (32%), Positives = 189/375 (50%), Gaps = 26/375 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + +V+V MSGGVDSSV A LL+ GY V G+ ++ + ++ C A +D+ DA V Sbjct: 6 NTKVIVGMSGGVDSSVSALLLRDAGYRVEGLFMKNWEEDDGTEY---CTAKEDLADASSV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + + ++ + + V F S Y AG TP P + CNR +KF + LGAD Sbjct: 63 ADRLGIPLHEANFAAEYWDNVFEHFLSEYRAGRTPNPDILCNREIKFRAFIDYATLLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R + + + + + +D +DQSYFL +L FP+G++ K Sbjct: 123 CIATGHYVRRGHF-----ESKATLLKGLDTNKDQSYFLHQVGNVELGRTLFPVGEIDKPR 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA E L A K DS ICF+ + ++ D +++ A G+I L+G+ +G+H G+ Sbjct: 178 VRQLAEENQLVTAKKKDSTGICFIGERRFKDFLRQYLP--AQPGNIEDLDGRTIGQHIGL 235 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVY--LDKNSSRVIVG-PRESLEVHRIYLREINWL 311 + +TIGQR+GLG+ P +VV LD+N V G +L R+ +I W+ Sbjct: 236 MYHTIGQRQGLGIGGLADHDEAPWYVVGKDLDRNVLLVAQGNDHPALFSSRLLTGDIFWI 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + + KIR Q + D G V F+ + V GQ+ VFY + Sbjct: 296 SG----EPPAPSVQLSAKIRYRQPDQDCHLVAIDGGFEVVFDTPQRAVTPGQSVVFYDGE 351 Query: 372 SNEARVLGGGIISGS 386 LGGG+I S Sbjct: 352 C----CLGGGVIEDS 362 >gi|292492808|ref|YP_003528247.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosococcus halophilus Nc4] gi|291581403|gb|ADE15860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosococcus halophilus Nc4] Length = 367 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 119/372 (31%), Positives = 186/372 (50%), Gaps = 27/372 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV A L+ GY + G+ ++ + + C QD DA V Sbjct: 5 KVVVGLSGGVDSSVAALQLQHQGYPISGLFMKNWVD---FADESECTIAQDREDAHAVTS 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + +S + ++ + + V F Y G TP P + CNR +KF L+ +LG ++ Sbjct: 62 LLGISLHEANFAMEYWDQVFRYFLDEYRLGRTPNPDILCNREIKFKAFLNHALELGNPLI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R +G+ R + R D +DQSYFL+ Q+QL FPLG+++K VR Sbjct: 122 ATGHYARIEQ---KEGRYRLLKGR--DKNKDQSYFLYTLGQKQLSHTLFPLGELEKPQVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A L +K DS ICF+ + ++ + + R A G++ G+++G+H+G++ Sbjct: 177 RIAAGANLPNHNKKDSTGICFIGERRFKEFLGRYLP--AQPGEMRTPQGELIGKHDGLMY 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGD 313 YT+GQRRGLG+ + G P FVV D + + V G L+ + +++W+ Sbjct: 235 YTLGQRRGLGIGGRKNSNGAPWFVVGKDLPRNTLYVAQGGDHPWLKSQTLEANQLHWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 + C K R Q P + + +G + V F+ + V GQA VFY D Sbjct: 295 ----QPPSLPYLCAAKTRYRQADQPCTLTKITNGRIKVVFDSPQYAVTPGQAVVFYRRDE 350 Query: 373 NEARVLGGGIIS 384 LGGG I+ Sbjct: 351 ----CLGGGTIT 358 >gi|54020202|ref|YP_115943.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma hyopneumoniae 232] gi|53987375|gb|AAV27576.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase [Mycoplasma hyopneumoniae 232] Length = 387 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 116/368 (31%), Positives = 193/368 (52%), Gaps = 38/368 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--------RKASKRKGSCCAGQDV 73 ++VV +SGGVDS+V A LLK+ G++VI V ++ ++S +K K C QD Sbjct: 18 KIVVGLSGGVDSAVSAYLLKKAGHNVIAVFMRNWDSSLNNDFLGKKNEKNFTICPQEQDW 77 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ V +N+ + D+ + + + V Y +G TP P + CN+ +KF L Sbjct: 78 LDAKVVAKQLNIPIFRIDFIKEYWDEVFSDLILKYQSGLTPNPDILCNKNIKFKHFLDYA 137 Query: 134 RQL-GADVLATGHYIRS---RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 +++ AD +A GHY ++ LY G D +DQSYFL ++ QL Sbjct: 138 QKVHNADFIAMGHYAKTDNGNLYAGADS------------LKDQSYFLGQLSKSQLQKTI 185 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 FPLG++ K VR +A E+GL A K DS ICF+ + K+ D ++ N A G+I+ ++ Sbjct: 186 FPLGNLHKSEVRKIANELGLINAKKKDSTGICFIGERKFTDFLQ--NYIPAQPGNIIDIS 243 Query: 250 -GQILGRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304 ++LG+H GI+ +TIGQR+G G++ M EP FVV + + V P ++ LE + Sbjct: 244 TKKVLGKHIGIMYFTIGQRKGFGLSGMKEPYFVVGHNLKEKILYVSPQSEKKWLESDSLM 303 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363 + N+L + +D K R Q+ +P+ +++ D+ ++ ++K + + GQ Sbjct: 304 AKNANFLSENFRN---LDNLSA--KFRYRQEAIPIKIEKIQDNSFWISYQKYQ-AITPGQ 357 Query: 364 ACVFYTSD 371 V Y + Sbjct: 358 QVVIYHQN 365 >gi|190574280|ref|YP_001972125.1| tRNA-specific 2-thiouridylase MnmA [Stenotrophomonas maltophilia K279a] gi|205828975|sp|B2FQX2|MNMA_STRMK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|190012202|emb|CAQ45825.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Stenotrophomonas maltophilia K279a] Length = 380 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 133/393 (33%), Positives = 189/393 (48%), Gaps = 32/393 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V +SGGVDSSV A L + G V G+ +Q + A G C A D DA VC Sbjct: 5 RVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + V F + YAAG TP P V CNR VKF L R+LGA+ + Sbjct: 61 LLGIPFHFRDFSSEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R V G + ++ R D +DQSYFL Q+QL FP+GD++K +R Sbjct: 121 ATGHYAR----VTQRGH-QWLLLRGADRSKDQSYFLHQLGQEQLAATLFPIGDLEKTDLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNGQILGRHNGII 260 +AR++ L K DS ICF+ + + + + R A G I+ +G ++ H G+ Sbjct: 176 RIARDVSLPTHAKKDSTGICFIGERDFREFLGRYLP--AKPGQILDPADGSVIAEHPGVF 233 Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RES--LEVHRIYLREINWLG 312 +T+GQR GL + P +VV D S+ + V R+S + R+ +W+ Sbjct: 234 YFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSKWMLSERLRSETAHWIA 293 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 F+C + R Q P VQ DDG V V F + + V GQ+ V Y D Sbjct: 294 G----SPPARRFECTAQTRYRQPDEPCTVQVLDDGSVLVTFARPQRAVTPGQSLVLYDGD 349 Query: 372 SNEARVLGGGIISGSKRSDAVEESLLSVIGDEF 404 LGG +I+ +DA E L F Sbjct: 350 V----CLGGAVIAA---TDAPLEQRLRTTPSPF 375 >gi|325295428|ref|YP_004281942.1| tRNA-specific 2-thiouridylase mnmA [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065876|gb|ADY73883.1| tRNA-specific 2-thiouridylase mnmA [Desulfurobacterium thermolithotrophum DSM 11699] Length = 350 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 120/366 (32%), Positives = 183/366 (50%), Gaps = 32/366 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++ SGG+DS A LLK + V V ++ K A Sbjct: 3 KVILGFSGGIDSFYTAYLLKEQRFKVFPVYFKVLPDISTEK-------------AEESAS 49 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + V D + FR VI F Y G TP PC CN+ +K L ++++L AD + Sbjct: 50 ILGLGLTVIDLSDEFRKKVINHFIEYYKKGLTPNPCAICNKDIKLKYLYELSKELKADFI 109 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 +TGHY + + D ++ ++ R D ++QSYFL + L PLG+ KE V Sbjct: 110 STGHYAKVSYF---DKWKKNLILRGKDKRKEQSYFLSLVEKFVFQKLLLPLGNFTKEEVV 166 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 A+E+G +S+SQDICF++ G Y + +++ G V ++G +G+H G Sbjct: 167 LRAQELGFPF--ESESQDICFIE-GHYVNFLEKFIK--PKPGVFVLIDGTPVGKHKGYYK 221 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YT+GQRRGLG++ +PL+V+ +D +RVIVG ++ ++ IY++ INW D VV Sbjct: 222 YTVGQRRGLGISYTKPLYVISIDAKRNRVIVGEKKEIQKDIIYVKNINWHLD----YEVV 277 Query: 322 DGFKCF-VKIRSSQDPVPV-FVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVL 378 F V+IR PV V + +G++ V A GQ C FY SNE +L Sbjct: 278 KKFDTIQVQIRYRSKPVEVEKIDYLKNGIFCVKLAAKVDAPAPGQVCAFY---SNEL-LL 333 Query: 379 GGGIIS 384 GGG I+ Sbjct: 334 GGGEIT 339 >gi|237736558|ref|ZP_04567039.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium mortiferum ATCC 9817] gi|229420420|gb|EEO35467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium mortiferum ATCC 9817] Length = 352 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 118/367 (32%), Positives = 189/367 (51%), Gaps = 23/367 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV+ MSGGVDSS+ LL++ GY+VIGVTL N +K K +++ A++V + Sbjct: 5 KVVLGMSGGVDSSISVYLLQKQGYEVIGVTL---NHKKEESLK------EEIDSAKKVAN 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 N+ H V D E+ F+ V+ F Y+ G TP PCV C+ VK L + + A + Sbjct: 56 FFNIKHRVIDIEDIFQKEVVNNFLDGYSKGITPSPCVICDERVKMKILFDIADEEKAYYV 115 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + ++ + ++ + D ++DQSY L+ ++ L FPL K +R Sbjct: 116 ATGHYCSTEY---NEEFDKILLKKAKDSKKDQSYMLYRLDSDKISRLLFPLFKYTKNEIR 172 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGII 260 ++ +GL++ +K DSQ ICF + G Y D +KR N G +++ G + +G I+G H G Sbjct: 173 EIGENIGLEVHNKKDSQGICFAKIG-YIDFLKR-NLGDSIKRGKFIDRDGNIMGEHEGYQ 230 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQRRGL + + F+ ++ + + +G + L R+ L +++ E + Sbjct: 231 LYTIGQRRGLNLKLPRAYFITAINPEKNEITLGEYKELARKRVEL--VDFKSPIELEKII 288 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 K + R S V ++ +Y ++ + V A GQ V Y D VLGG Sbjct: 289 EK--KVIGRPRFSSFGAEGKVIVENEKIYFEYFEENVQNAPGQHLVIYYKDF----VLGG 342 Query: 381 GIISGSK 387 G+I K Sbjct: 343 GMIVDKK 349 >gi|261392212|emb|CAX49726.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis 8013] Length = 367 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 129/382 (33%), Positives = 190/382 (49%), Gaps = 26/382 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++ NP + ++V +SGGVDSSV AALLK+ GY V GV +Q + + C Q Sbjct: 1 MNTTANPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 55 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D I + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 56 DSFDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 115 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 116 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 170 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 171 LGGLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 228 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308 +G H G++ YT+GQR+GLG+ GEP FV L KN V+ G L +Y R + Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 284 Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 N L L E + C + R + P + +D+ + F++ + V GQ+ V Sbjct: 285 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCEL-RYLDDETAELVFDEPQWAVTPGQSAV 343 Query: 367 FYTSDSNEARVLGGGIISGSKR 388 Y D LGGGII + + Sbjct: 344 LYDGDI----CLGGGIIQSTDK 361 >gi|194290687|ref|YP_002006594.1| tRNA-specific 2-thiouridylase mnma [Cupriavidus taiwanensis LMG 19424] gi|229486340|sp|B3R6Q0|MNMA_CUPTR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|193224522|emb|CAQ70533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cupriavidus taiwanensis LMG 19424] Length = 361 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 127/371 (34%), Positives = 181/371 (48%), Gaps = 26/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ + S+ C QD D V D Sbjct: 7 RVVVGMSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSEY---CSTRQDWLDVVSVAD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I V ++ +++ V F Y+AG TP P V CN +KF L LGA+ + Sbjct: 64 LIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAETI 123 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R + R + + +D +DQSYFL Q QL FPLG++ K VR Sbjct: 124 ATGHYARVR----QNAAGRFELLKALDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKTRVR 179 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A E+GL A K DS ICF+ + + D + R G + G+++G H G+ Sbjct: 180 EIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPEGKVVGEHIGLAF 237 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313 YT+GQR+G+G+ G+ +V D N+ V+ G L + +++W Sbjct: 238 YTLGQRKGIGLGGSRDGNGDAWYVARKDMANNTLYVVQGHDHPWLLTPVLNASDLSW--- 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDS 372 + + G K R Q VQ D D + + F + + V GQ+ V Y D Sbjct: 295 -VAGEPPAAGAAMAAKTRYRQSDAACTVQAVDADALSLGFAEPQWAVTPGQSAVLYDGDI 353 Query: 373 NEARVLGGGII 383 LGGGII Sbjct: 354 ----CLGGGII 360 >gi|94499665|ref|ZP_01306202.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oceanobacter sp. RED65] gi|94428419|gb|EAT13392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oceanobacter sp. RED65] Length = 369 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 125/384 (32%), Positives = 199/384 (51%), Gaps = 36/384 (9%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + +V+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ V Sbjct: 8 NTKVIVGMSGGVDSSVSAYLLMEQGYHVEGLFMKNWEEDDGTEY---CTAKEDLADAQAV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + + + ++ + + V F Y AG TP P + CNR +KF L + LGAD Sbjct: 65 CDKLGIKLHSANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYAKILGAD 124 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R DG + + +D +DQSYFL A + ++ FP+G+++K Sbjct: 125 YIATGHYVRR---YEKDGS--TYLLKGLDNNKDQSYFLHAVGEDEIKQTLFPVGELEKPE 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E GL A K DS ICF+ + ++ D +K+ A G I G+ +GRH G+ Sbjct: 180 VRRIAEEQGLATAKKKDSTGICFIGERRFKDFLKQYIP--AQPGTIKTPEGEEMGRHEGL 237 Query: 260 INYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVGP--------RESLEVHRIYLR 306 + YT+GQR+G+G+ + P +VV D + ++VG +SL+ IY Sbjct: 238 MYYTLGQRQGIGIGGSKHHGEAPWYVVGKDLERNELMVGQGKDHPLLFSKSLDCFNIY-- 295 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 W+ E A + +C K+R Q + + D G ++ F++ + V GQ+ V Sbjct: 296 ---WVNG---EPADLPK-RCKAKVRYRQADQDCTIDKTDSGYHIIFDEPQRAVTPGQSLV 348 Query: 367 FYTSDSNEARVLGGGIISGSKRSD 390 Y + LGGGII ++ ++ Sbjct: 349 LYDGEI----CLGGGIIERTQLAE 368 >gi|294339421|emb|CAZ87777.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thiomonas sp. 3As] Length = 368 Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 127/376 (33%), Positives = 179/376 (47%), Gaps = 24/376 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV +SGGVDSSV A LLK+ GY V+G+ ++ + S+ C QD DA V D Sbjct: 9 VVVGLSGGVDSSVSAWLLKQQGYTVVGLFMKNWEDDDDSE---YCSTRQDWLDAASVADR 65 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + ++ ++ V F YAAG TP P V CN +KF L +LGAD +A Sbjct: 66 IGIDIEAVNFAAEYKERVFAEFLREYAAGRTPNPDVLCNAEIKFKAFLDHAMRLGADRIA 125 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R R D G + R +D +DQSYFL Q QL FP+G++ K VR Sbjct: 126 TGHYARVR--ETDHGFE---LLRGLDASKDQSYFLHRLNQAQLARTLFPVGELNKTEVRK 180 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A +GL A K DS ICF+ + + D + R G + G+ +G H G+ Y Sbjct: 181 VAETIGLHNARKKDSTGICFIGERPFRDFLSRYLP--TQPGAMKTPEGKTVGEHLGLAFY 238 Query: 263 TIGQRRGL-----GVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLGDG 314 T+GQR+G+ GEP FV D +++IV L H + +W+ G Sbjct: 239 TLGQRKGIGLGGSNSGNGEPWFVAGKDLERNQLIVAQGHDHPLLLSHTLQALSASWV-SG 297 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 V G+ + R D F + + + F+ + V GQ+ V Y + Sbjct: 298 TAPTEEVFGYGAKTRYRQV-DAACRFQDQGPERFTLKFDAPQWAVTPGQSAVLYDGEV-- 354 Query: 375 ARVLGGGIISGSKRSD 390 LGGGII + R+D Sbjct: 355 --CLGGGIIEAASRND 368 >gi|295698406|ref|YP_003603061.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Riesia pediculicola USDA] gi|291157242|gb|ADD79687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Riesia pediculicola USDA] Length = 363 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 116/381 (30%), Positives = 196/381 (51%), Gaps = 36/381 (9%) Query: 16 KNPKDM--RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 KN K+ RVVV MSGGVDSSV A LLK+ Y+V+G+ ++ + SC +D+ Sbjct: 2 KNKKNYVARVVVGMSGGVDSSVAALLLKKRNYEVLGLFMKNWEEDDGH----SCSYIEDL 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D + VC+ + + Y ++ + N V F Y G+TP P V CN+ +KF + L + Sbjct: 58 KDVKSVCEKLKIQLYQVNFSIEYWNKVFKVFLKKYKTGKTPNPDVLCNKEIKFKEFLDFS 117 Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 L AD +ATGHY+R + + I+ + D +DQSYFL Q QL + FP+ Sbjct: 118 LENLNADYIATGHYVRKK-----KRNEKYILLKAKDERKDQSYFLHLLDQSQLEKVIFPI 172 Query: 193 GDMKKESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 G+ KK +R +A + G L ++ K DS ICF+ + ++ + +++ + GDI+ ++ + Sbjct: 173 GEFKKSEIRKIAEKNGLLSVSKKKDSTGICFIGKKRFENFLQKYIS--CKNGDILSVHKE 230 Query: 252 ILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRE---SLEVHRI 303 I+G+H G I YT+GQR+G+ + P +V+ + + +++ + SL I Sbjct: 231 IIGQHPGSILYTLGQRKGIRIGGIKNEKHGPWYVIDKNVKQNTIMISQNKFHPSLVSKGI 290 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASG 362 + ++W+ + ++C V+ R Q +++ + + V F+ + V G Sbjct: 291 IINNVHWISE--------PKYRCSVQTRYHQKETYCSIRKICLNRISVRFDHPILSVTPG 342 Query: 363 QACVFYTSDSNEARVLGGGII 383 Q VFY + LGGG I Sbjct: 343 QYGVFYDREV----CLGGGEI 359 >gi|168070921|ref|XP_001786986.1| predicted protein [Physcomitrella patens subsp. patens] gi|162660006|gb|EDQ48200.1| predicted protein [Physcomitrella patens subsp. patens] Length = 257 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 107/269 (39%), Positives = 152/269 (56%), Gaps = 16/269 (5%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G+C A D D RRVC+ I + Sbjct: 1 MSGGVDSSVTALLLKQQGYDVIGIFMKNWDD---TDEFGNCTAEDDAEDVRRVCEQIGIP 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 +Y ++E+ + + V F Y G TP P V CNR +KF + L+ LGA +ATGHY Sbjct: 58 YYTVNFEKEYYDKVFSYFLDEYKLGRTPNPDVMCNREIKFGEFLTKALNLGAQYVATGHY 117 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 R V DG + R +D +DQ+YFL A QQQL FP+G + K VR +A E Sbjct: 118 ARV---VEQDG--VYTLLRGVDSNKDQTYFLNALNQQQLSKAMFPIGHLPKPEVRRIAEE 172 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGIINYTIG 265 GL A K DS +CF+ + + + + + A G +V + G++ GRH+G++ YT+G Sbjct: 173 AGLYTAKKKDSTGVCFIGERNFKEFLSQYLP--AQSGQMVDIATGEVKGRHDGLMYYTLG 230 Query: 266 QRR---GLGVAMGEPLFVVYLDKNSSRVI 291 QR+ G GEP FV DK+ + I Sbjct: 231 QRQGLGIGGSGSGEPWFVA--DKDLEKNI 257 >gi|242279051|ref|YP_002991180.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfovibrio salexigens DSM 2638] gi|242121945|gb|ACS79641.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfovibrio salexigens DSM 2638] Length = 360 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 119/362 (32%), Positives = 172/362 (47%), Gaps = 21/362 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V +A+SGG DS + LLK G D++ V KA AG + + C Sbjct: 18 KVAMAVSGGADSLLSMVLLKESGADIVAVHGCFLGKEKAE----VAVAGLE-----KRCA 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 ++VS +VFD F V+ PF Y G TP PC CN +KF L ++LG D+L Sbjct: 69 ELDVSLHVFDLTAEFDRLVVEPFVQEYLRGNTPNPCALCNPEIKFGVLYKAAQELGCDLL 128 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 TGHY+R + +D + R++ R D+ +DQSYFL + + + FPLG K+ Sbjct: 129 GTGHYVR----IAEDARYGRVLARGADMGKDQSYFLSLVPRDSVLNAIFPLGGHSKDQTY 184 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 + G++I S+SQ+ICFV Y + + G V +G +G+HNG+ Sbjct: 185 AELDKRGVEIPLPSESQEICFVPDDDYRQFLIDRKVKLPGPGIAVLSDGTKVGKHNGLWR 244 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YT GQRRGLG++ PL+V+ D + +IVG + LE N+L D FE Sbjct: 245 YTQGQRRGLGISWKAPLYVLDKDMKRNLLIVGTSDELEAGGCIADSFNFLID--FERWPE 302 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 +++ R Q P + + DF + GQ YT E VLGGG Sbjct: 303 ---TVYIQTRYRQRSKPARAVQVGSSIKFDFIEPHSRPTPGQIVAVYT---EEGAVLGGG 356 Query: 382 II 383 II Sbjct: 357 II 358 >gi|121596352|ref|YP_988248.1| tRNA-specific 2-thiouridylase MnmA [Acidovorax sp. JS42] gi|205811052|sp|A1WD47|MNMA_ACISJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|120608432|gb|ABM44172.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidovorax sp. JS42] Length = 379 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 125/391 (31%), Positives = 188/391 (48%), Gaps = 42/391 (10%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K RVVV +SGGVDS+V A LLK+ G++V+G+ ++ + S+ C + QD DA Sbjct: 2 KKHRVVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---FCSSRQDFLDAAS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ +++ V F Y AG TP P V CN +KF L +LGA Sbjct: 59 VADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R R + + + +D +DQSYFL Q QL FP+G++ K Sbjct: 119 EKIATGHYARVRQ---NPATGLFELLKGLDPSKDQSYFLHRLNQAQLSKTLFPVGELHKT 175 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A ++GL A K DS ICF+ + + + + R G I+ G+ LGRH G Sbjct: 176 EVRRIAADIGLPNAKKKDSTGICFIGERPFREFLNRYIQ--HAPGPILDDRGRKLGRHVG 233 Query: 259 IINYTIGQRRGLGVA------------MGEPL---------FVV--YLDKNSSRVIVGPR 295 + YT+GQR+GLG+ G+P+ FV L+ N+ RV+ G Sbjct: 234 LSFYTLGQRQGLGIGGVKEKGAGAKAPSGQPVRGAGDHAPWFVARKELETNTLRVVQGHE 293 Query: 296 ES-LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFE 353 L HR+ ++ +W+ C K R QD + D + F Sbjct: 294 HPWLLSHRLDAQDASWIAGHPPAAGA-----CAAKTRYRQQDAACTVLAAQGDAFNLQFP 348 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 +++ V GQ+ V Y + LGGG+I+ Sbjct: 349 EAQWAVTPGQSAVLYDGEV----CLGGGVIA 375 >gi|261379871|ref|ZP_05984444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria subflava NJ9703] gi|284797568|gb|EFC52915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria subflava NJ9703] Length = 367 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 123/371 (33%), Positives = 188/371 (50%), Gaps = 24/371 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++V +SGGVDSSV AALLK+ G+ + GV +Q + + C QD +DA V D Sbjct: 10 IIVGLSGGVDSSVTAALLKQQGHQISGVFMQNWEDDDNDEY---CSIKQDSFDAIAVADI 66 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + + ++ ++++ V F Y+AG TP P + CN +KF L + GAD +A Sbjct: 67 IGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDILCNAEIKFKCFLDYAIEQGADTIA 126 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R + G + + +D +DQSYFL+ QL FPLG+++K VR Sbjct: 127 TGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERSIFPLGELEKPEVRR 181 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA E L A K DS ICF+ + + + +++ G +V G+++G H G++ Y Sbjct: 182 LAEEFKLPTATKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGKVVGEHVGLMFY 239 Query: 263 TIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI--NWLGDGLFE 317 T+GQR+GLG+ GEP FV L KN V+ G L +Y + + N L L E Sbjct: 240 TLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTQSLVMNDLSFTLPE 295 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + C + R + P +D+ + + F++ + V GQ+ V Y D Sbjct: 296 RPKEGRYTCKTRYRMADAPC-TLRYLDDETIELVFDEPQWAVTPGQSAVLYDGDV----C 350 Query: 378 LGGGIISGSKR 388 LGGGII + + Sbjct: 351 LGGGIIMSTDK 361 >gi|242239492|ref|YP_002987673.1| tRNA-specific 2-thiouridylase MnmA [Dickeya dadantii Ech703] gi|242131549|gb|ACS85851.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dickeya dadantii Ech703] Length = 370 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 123/376 (32%), Positives = 199/376 (52%), Gaps = 33/376 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + ++ C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDDTE---YCSAAADLADAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 65 KLGIELHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFAAEDLCADY 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + D + R++ R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 125 IATGHYVRRQ----DIAGKSRLL-RGLDNNKDQSYFLYTLSHEQVAQSLFPVGELEKPQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259 R +A E+ L A K DS ICF+ + K+ D + R A G I+ + +G+ +G H G+ Sbjct: 180 RRIAEELDLATAKKKDSTGICFIGERKFRDFLARYLP--AQPGAIISVDDGKTMGEHQGL 237 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREIN 309 + +T+GQR+GLG+ +P +VV DK+ + I+ + E R+ ++++ Sbjct: 238 MYHTLGQRKGLGIGGVRDGGDDPWYVV--DKDVANNILYVAQGHEHPRLMSQGLIAQQLH 295 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + + C VK R Q +P ++ V V FE V GQ+ VFY Sbjct: 296 WVD----REPLSQPQTCTVKTRYRQADIPCTLTPLGEERVEVRFESPVAAVTPGQSAVFY 351 Query: 369 TSDSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 QGEV----CLGGGIIE 363 >gi|15677407|ref|NP_274563.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis MC58] gi|14195280|sp|Q9JYJ6|MNMA_NEIMB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|7226803|gb|AAF41910.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis MC58] gi|316983800|gb|EFV62780.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis H44/76] gi|325199845|gb|ADY95300.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis H44/76] Length = 367 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 129/383 (33%), Positives = 190/383 (49%), Gaps = 26/383 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++ NP + ++V +SGGVDSSV AALLK+ GY V GV +Q + + C Q Sbjct: 1 MNTTANPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 55 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D I + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 56 DSFDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 115 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 116 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 170 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 171 LGGLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 228 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308 +G H G++ YT+GQR+GLG+ GEP FV L KN V+ G L +Y R + Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 284 Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 N L L E + C + R + P + +D+ + F++ + V GQ+ V Sbjct: 285 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCEL-RYLDDETAELVFDEPQWAVTPGQSAV 343 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 Y D LGGGII + + Sbjct: 344 LYDGDI----CLGGGIIQTTDKP 362 >gi|237746906|ref|ZP_04577386.1| tRNA-specific 2-thiouridylase mnmA [Oxalobacter formigenes HOxBLS] gi|229378257|gb|EEO28348.1| tRNA-specific 2-thiouridylase mnmA [Oxalobacter formigenes HOxBLS] Length = 369 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 128/380 (33%), Positives = 184/380 (48%), Gaps = 35/380 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV+ MSGGVDSSV A LLK GY+VIG+ ++ + S+ C A QD DA V D Sbjct: 5 KVVIGMSGGVDSSVSAWLLKEQGYEVIGLFMKNWEDDDDSE---FCSARQDWLDAVTVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + V ++ ++ V F Y AG TP P V CN +KF L LGA+ + Sbjct: 62 VIGIDIEVVNFAAEYKERVFSEFLKEYEAGRTPNPDVLCNAEIKFKAFLDHAISLGAERI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R + + + +D +DQSYFL QQQL FPLG+++K VR Sbjct: 122 ATGHYARVR-----ENNGFFELLKAVDDTKDQSYFLHRLNQQQLSKTIFPLGEIRKTEVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGII 260 +A ++GL A K DS ICF+ + + + R ++ E G I G +G+H G+ Sbjct: 177 QIAEKIGLPNAKKKDSTGICFIGERPFRAFLNRY---LSYEPGPIKTPEGDEIGQHVGLS 233 Query: 261 NYTIGQRRGLGV----------AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307 YTIGQR+G+G+ + +V D +++ + V L + + Sbjct: 234 FYTIGQRKGIGIGGLKSFRRPDGTSDAWYVARKDTHNNTLYVVQGHDHPWLLSPSLEAGQ 293 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACV 366 +W+ ED + VK R Q VP V + + FEK + + GQ+ V Sbjct: 294 SSWIAGISPEDGELS-----VKTRYRQKDVPCVLNVTGNSELTASFEKPQWAITPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIISGS 386 FY + LGGGII S Sbjct: 349 FYKGNV----CLGGGIIDNS 364 >gi|148244833|ref|YP_001219527.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Vesicomyosocius okutanii HA] gi|166235089|sp|A5CW80|MNMA_VESOH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|146326660|dbj|BAF61803.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Vesicomyosocius okutanii HA] Length = 362 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 116/373 (31%), Positives = 182/373 (48%), Gaps = 27/373 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ +++V +SGGVDSSV A LL + GY V + ++ + + C A QD+ DA+ Sbjct: 6 KNTKIIVGLSGGVDSSVTALLLLKQGYQVEALFMKNWEEDDKGRY---CSAKQDLSDAQN 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + +++ + ++ + N V F Y G TP P + CN+ +KF L LGA Sbjct: 63 ITNKLSIKLHTINFSVDYWNDVFTHFLKEYKKGRTPNPDILCNQKIKFGAFLKHAISLGA 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R +G + + +D +DQSYFL +Q QL FPLG+ K Sbjct: 123 DKIATGHYAR---IAKKNGTYQ--LKTGLDNNKDQSYFLHLLSQYQLSKSLFPLGETNKI 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A E G A K DS ICF+ + K+ + + +G+IV GQ + H G Sbjct: 178 DVRNIATENGFVTAKKKDSTGICFIGERKFSEFLATYLP--KQQGNIVGEQGQFIKHHQG 235 Query: 259 IINYTIGQRRGLGVA-----MGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLREINWL 311 + YTIGQR+GL + G+P FV +++N V+ G L + + W+ Sbjct: 236 LAFYTIGQRKGLEIGGGFGKSGKPWFVADKCIERNELVVVQGDHTLLYYQTLNTSKPYWI 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTS 370 C KIR Q + Q N+ + + F++ + + GQ+ VFY + Sbjct: 296 -----NTPPTLPMTCNAKIRYRQQSQSCMISQDNNKQLKIIFKQPQRAITPGQSIVFYDN 350 Query: 371 DSNEARVLGGGII 383 ++ LGG II Sbjct: 351 ET----CLGGAII 359 >gi|120436568|ref|YP_862254.1| tRNA methyl transferase [Gramella forsetii KT0803] gi|205816859|sp|A0M3J2|MNMA_GRAFK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|117578718|emb|CAL67187.1| tRNA methyl transferase [Gramella forsetii KT0803] Length = 395 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 127/400 (31%), Positives = 199/400 (49%), Gaps = 44/400 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV A LLK GY+VIG+ ++ ++ + C D DA V D Sbjct: 3 KVVVGLSGGVDSSVSAYLLKEQGYEVIGLFMKNWHDDSVTISD-ECPWLDDSNDAMMVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + D E+++ ++ + Y G TP P V CNR +KF + + LGAD + Sbjct: 62 KLGIPFQTVDLSEQYKERIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMKIALSLGADYV 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + DG+ + D +DQSYFL TQ+QL FP+G+++K VR Sbjct: 122 ATGHYCRKAEF-EKDGEPIYQLLSGEDNNKDQSYFLCQLTQEQLSKTLFPIGELQKSEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFD-----------VVKRINAG--IALEGDI--- 245 +A E L A+K DSQ +CF+ + + D V+ + AG LE DI Sbjct: 181 KIAAEQNLVTAEKKDSQGLCFIGKVRLPDFLQQKLKSKEGVIVEVPAGNDSYLEEDINFK 240 Query: 246 ------VHL---------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSR 289 HL +G+++G+H G +T GQR+GL V EPLFV+ D + Sbjct: 241 SKIDQLQHLSKKFNYQLTDGKVVGKHQGAHYFTKGQRKGLAVGGTPEPLFVIDTDVIENV 300 Query: 290 VIVGP-RESLEVHR----IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN 344 + G ++ ++R I E++W+ L D+ + + +IR Q + + Sbjct: 301 IYTGQGKDHPGIYRQGLFIAQDEVHWVRRDLAIDS-DEELRIKARIRYRQPLQDATLHQT 359 Query: 345 DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 ++G+YV F++ + + GQ +Y + +LG G+IS Sbjct: 360 ENGMYVIFDQPQASITEGQFVAWYQN----GELLGSGVIS 395 >gi|332109252|gb|EGJ10175.1| tRNA-specific 2-thiouridylase MnmA [Rubrivivax benzoatilyticus JA2] Length = 363 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 126/376 (33%), Positives = 190/376 (50%), Gaps = 29/376 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDS+V A LLK+ GY+V+G+ ++ + S+ C + QD DA V D Sbjct: 6 RVVVGLSGGVDSAVSAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSSRQDFLDAAAVAD 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L +LGA+ + Sbjct: 63 VIGIDLEHVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMRLGAERI 122 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + +D +DQSYFL Q QL FP+G++ K VR Sbjct: 123 ATGHYARVRERDG-----RFELLKGLDPAKDQSYFLHRLNQAQLARTMFPVGELPKTEVR 177 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A E+GL A K DS ICF+ + + + + R A GDI G+++GRH G+ Sbjct: 178 RIAAEIGLPNAKKKDSTGICFIGERPFREFLNRYLA--QAPGDIEDERGRVVGRHVGLSF 235 Query: 262 YTIGQRRGLGVAMGE-------PLFVVY--LDKNSSRVIVGPRESLEVHR-IYLREINWL 311 YT+GQR+GLG+ + P +V L++N RV+ G + R + + W+ Sbjct: 236 YTLGQRQGLGIGGLKSGGGEHAPWYVARKELERNVLRVVQGHDHPWLLSRTLAAGDCAWV 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 D + K R Q ++R+ + V + F + + V GQ+ V Y + Sbjct: 296 AGTPPADGALA-----AKTRYRQADAACTLRRDGEAVVLSFAEPQWAVTPGQSAVVYDGE 350 Query: 372 SNEARVLGGGIISGSK 387 LGGG+I S+ Sbjct: 351 V----CLGGGVIESSE 362 >gi|72080763|ref|YP_287821.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma hyopneumoniae 7448] gi|123644877|sp|Q4A7U1|MNMA_MYCH7 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71913887|gb|AAZ53798.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase [Mycoplasma hyopneumoniae 7448] Length = 372 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 116/368 (31%), Positives = 193/368 (52%), Gaps = 38/368 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--------RKASKRKGSCCAGQDV 73 ++VV +SGGVDS+V A LLK+ G++VI V ++ ++S +K K C QD Sbjct: 3 KIVVGLSGGVDSAVSAYLLKKAGHNVIAVFMRNWDSSLNNDFLGKKNEKNFTICPQEQDW 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ V +N+ + D+ + + + V Y +G TP P + CN+ +KF L Sbjct: 63 LDAKVVAKQLNIPIFRIDFIKEYWDEVFSDLILKYQSGLTPNPDILCNKNIKFKHFLDYA 122 Query: 134 RQL-GADVLATGHYIRS---RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 +++ AD +A GHY ++ LY G D +DQSYFL ++ QL Sbjct: 123 QKVHNADFIAMGHYAKTDNGNLYAGADS------------LKDQSYFLGQLSKSQLQKTI 170 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 FPLG++ K VR +A E+GL A K DS ICF+ + K+ D ++ N A G+I+ ++ Sbjct: 171 FPLGNLLKSEVRKIANELGLINAKKKDSTGICFIGERKFTDFLQ--NYIPAQPGNIIDIS 228 Query: 250 G-QILGRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304 ++LG+H GI+ +TIGQR+G G++ M EP FVV + + V P ++ LE + Sbjct: 229 TKKVLGKHIGIMYFTIGQRKGFGLSGMKEPYFVVGHNLKEKILYVSPQSEKKWLESDSLM 288 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363 + N+L + +D K R Q+ +P+ +++ D+ ++ ++K + + GQ Sbjct: 289 AKNANFLSENFRN---LDNLSA--KFRYRQEAIPIRIEKIQDNSFWISYQKYQ-AITPGQ 342 Query: 364 ACVFYTSD 371 V Y + Sbjct: 343 QVVIYHQN 350 >gi|205822192|sp|A9M0Y5|MNMA_NEIM0 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 367 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 127/380 (33%), Positives = 187/380 (49%), Gaps = 24/380 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + C QD Sbjct: 1 MNTTANTTNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DA V D I + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 58 FDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 GAD +ATGHY R + G + + +D +DQSYFL+ QL FPLG Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ + Sbjct: 173 GLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGKTV 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI-- 308 G H G++ YT+GQR+GLG+ GEP FV L KN V+ G L +Y R + Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSLVM 286 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 N L L E + C + R + P + +D+ + F++ + V GQ+ V Y Sbjct: 287 NDLSFTLPERPKAGRYTCKTRYRMADAPCEL-RYLDDETAELVFDEPQWAVTPGQSAVLY 345 Query: 369 TSDSNEARVLGGGIISGSKR 388 D LGGGII + + Sbjct: 346 DGDI----CLGGGIIQTTDK 361 >gi|320355316|ref|YP_004196655.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Desulfobulbus propionicus DSM 2032] gi|320123818|gb|ADW19364.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Desulfobulbus propionicus DSM 2032] Length = 350 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 125/365 (34%), Positives = 182/365 (49%), Gaps = 30/365 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 + V VAMSGGVDS++ A+LL+ G+DV G + L + +R+ R V Sbjct: 4 LSVGVAMSGGVDSTMAASLLQEQGHDVHGFFMLLPLANLEVQRQ----------RVREVA 53 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D +++ D + F VI F SY AG TP PC+ CNR+VKF L R + Sbjct: 54 DRLSIPLTEVDLRQSFAEQVIGYFNRSYRAGLTPNPCIHCNRSVKFGLLADTMRHQDLER 113 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + VGD R + R D +DQSYFL Q+ L FPLGD K+ V Sbjct: 114 IATGHYARVQ-SVGD----RCFVARGSDRTKDQSYFLARLAADQVNTLLFPLGDWTKQQV 168 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNGQILGRHNGI 259 A +G + + +SQD+CF+ QG + ++ GI L G +V +G+ +G H G+ Sbjct: 169 YARAAALGFHFSGE-ESQDVCFLSQGLAAFLSEQ---GIGDLCGPVVTADGRQIGEHRGV 224 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQRRGLG+ P +VV LD +RVIVG ++ L R + + W Sbjct: 225 WHYTIGQRRGLGLPDVTPWYVVGLDGPGNRVIVGKQDDLFATRCTVHALRWT-----HQP 279 Query: 320 VVDGFKCFVKIRSSQDP-VPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 ++ V++RS P + + + F+ + + GQ V Y D RV+ Sbjct: 280 PALPWRGLVQLRSRHTPAMAALAPSGPEQWSLVFDTPQRAITPGQFAVCYEHD----RVV 335 Query: 379 GGGII 383 G +I Sbjct: 336 GSAVI 340 >gi|254230168|ref|ZP_04923562.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio sp. Ex25] gi|151937306|gb|EDN56170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio sp. Ex25] Length = 341 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 107/330 (32%), Positives = 172/330 (52%), Gaps = 25/330 (7%) Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C A +D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 17 CTAAEDLADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKF 76 Query: 127 SDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 L + L AD +A GHY+R D + M R +D +DQSYFL+ + +Q+ Sbjct: 77 KAFLEFADEVLDADYIAMGHYVRRSF---PDNGEKPAMLRGLDGNKDQSYFLYTLSHEQI 133 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+GD++K VR +A E GL A K DS ICF+ + K+ D + R A G+I Sbjct: 134 GRSLFPVGDLEKPEVRRIAEEQGLVTAKKKDSTGICFIGERKFTDFLGRYLP--AQPGNI 191 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMG-------EPLFVVY--LDKNSSRVIVGP-R 295 G+++G+H G++ +T+GQR+GL + EP FV L++N + G Sbjct: 192 ETPEGEVIGQHQGLMYHTLGQRKGLHIGGRKGGGGNEEPWFVGEKDLERNVLIAVQGKDH 251 Query: 296 ESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEK 354 L+ + +++W+ + + D KC VK R Q+ +P + +D+ + V F++ Sbjct: 252 PMLKSEGLLASQLHWVD----REPIRDVMKCTVKTRYRQEDIPCTIIPIDDENIKVIFDE 307 Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGIIS 384 ++ V GQ+ VFY D LGGGII Sbjct: 308 PQIAVTPGQSAVFYKDDV----CLGGGIIE 333 >gi|300310029|ref|YP_003774121.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Herbaspirillum seropedicae SmR1] gi|300072814|gb|ADJ62213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 368 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 125/382 (32%), Positives = 184/382 (48%), Gaps = 31/382 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVV+ MSGGVDSSV A LLK GY+VIG+ ++ + S+ C +D DA V D Sbjct: 5 RVVIGMSGGVDSSVSAWLLKEQGYEVIGLFMKNWEDDDDSEY---CSTREDWIDAVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + V ++ +++ V F Y AG TP P V CN +KF L +LGAD++ Sbjct: 62 VVGVDIEAVNFASEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMKLGADLI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G G + + + +D +DQSYFL Q+QL FPLG++ K VR Sbjct: 122 ATGHYARVRQ--GPQGDFQ--LLKALDASKDQSYFLHRLNQEQLSRTVFPLGEIHKTEVR 177 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A ++ L A K DS ICF+ + + + + R + G I +GQ +G H G+ Sbjct: 178 RIAEQLQLPNAKKKDSTGICFIGERPFREFLNRYLS--YKPGPIKTADGQTVGEHVGLSF 235 Query: 262 YTIGQRRGLGV----------AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EI 308 YT+GQR+G+G+ G+ +V D +N++ IV + + L ++ Sbjct: 236 YTLGQRKGIGIGGLKAHQNADGHGDAWYVARKDVENNTLYIVQGHDHPWLLSPTLSAGQV 295 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 +W+ + A + K R Q VP + F+ + V GQ+ V Y Sbjct: 296 SWVAGHAPQMAALS-----AKTRYRQADVPCGFSDAGASFSLAFDTPQWAVTPGQSAVLY 350 Query: 369 TSDSNEARVLGGGIISGSKRSD 390 D LGGGII D Sbjct: 351 DGDV----CLGGGIIENGALPD 368 >gi|150003843|ref|YP_001298587.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides vulgatus ATCC 8482] gi|205810962|sp|A6KZV1|MNMA3_BACV8 RecName: Full=tRNA-specific 2-thiouridylase mnmA 3 gi|149932267|gb|ABR38965.1| putative tRNA methyltransferase [Bacteroides vulgatus ATCC 8482] Length = 375 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 121/386 (31%), Positives = 189/386 (48%), Gaps = 40/386 (10%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N +D RV+V MSGG+DSS +L+ GY+V+GVT++ ++ G DV +A Sbjct: 2 NNRDKRVLVGMSGGIDSSATCIMLQEQGYEVVGVTMRTWDVPSRFSTPGQD-EPDDVLEA 60 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + + + + H+V D + F+ ++ F Y G TP PCV CN K L Q Sbjct: 61 RALAERLGIEHHVADVRKEFKQIIVKHFIDEYMQGRTPNPCVLCNPLFKERILCEWADQT 120 Query: 137 GADVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 ++TGHY R +LY+ GDD +DQSYFL+ Q+ L Sbjct: 121 NCAHISTGHYCRLEERKGKLYIVAGDDQT------------KDQSYFLWKLPQEILQRFL 168 Query: 190 FPLGDMKKESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDI 245 FPLG K+ VR+ R+ G + A +S +ICF+ +G Y + ++ I + G Sbjct: 169 FPLGTYTKQEVREYLRQKGFEAKARGGESMEICFI-EGDYRNFLRSQCPDIDTQVGPGWF 227 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 V+ G +G+H G YTIGQR+GL +A+G P +V+ ++ + V++G E L+ + + Sbjct: 228 VNSKGVKIGQHKGFPYYTIGQRKGLEIALGHPAYVLRINAEKNTVMLGDAEELKAEYMLV 287 Query: 306 REINWLGDGLFEDAVVDGFKC---FVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVAS 361 + + + D +C V+IR P+P V D+ + V F +A Sbjct: 288 EDYHI-------TEMQDLLQCKDLSVRIRYRSKPIPCQVLVLDEKQLLVRFLSEASAIAP 340 Query: 362 GQACVFYTSDSNEARVLGGGIISGSK 387 GQ+ VFY RVLGG I+ + Sbjct: 341 GQSAVFYEG----KRVLGGAFIASQR 362 >gi|228473347|ref|ZP_04058101.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Capnocytophaga gingivalis ATCC 33624] gi|228275249|gb|EEK14047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Capnocytophaga gingivalis ATCC 33624] Length = 397 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 127/407 (31%), Positives = 198/407 (48%), Gaps = 58/407 (14%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDSSV A LL++ GY+VIG+ ++ ++ + C +D DA V + Sbjct: 3 RVVVGLSGGVDSSVAAYLLQKQGYEVIGLFMKNWHDDSVTI-SNECPWLEDSNDALMVAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + D ++ ++ Y G TP P V CNR +KF+ L + LGAD + Sbjct: 62 KLGIPFQTVDMSVPYKQRIVDYMFREYERGRTPNPDVLCNREIKFATFLDLALSLGADYV 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + DGK + D +DQSYFL +Q+QL FP+GD++K VR Sbjct: 122 ATGHYCRKE-EIEVDGKPIYRLLAGKDTNKDQSYFLCQLSQEQLSRALFPIGDLQKNEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------- 248 +A+E+GL A+K DSQ +CFV + + + +++ + EGDI+ + Sbjct: 181 AIAKELGLVTAEKKDSQGLCFVGKVRLPEFLQQQLS--PKEGDIIQIPSTWAGYHNKQIL 238 Query: 249 ----------------------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDK 285 +G+I+G+H G +TIGQR+GL V EPLFV+ D Sbjct: 239 RCFECYEDELKFLAEKYHYTPQDGKIVGKHEGAHFFTIGQRKGLHVGGTAEPLFVIDTDT 298 Query: 286 NSSRVIVGP--------RESLEVHRIYLREINWL-GDGLFEDAVVDGFKCFVKIRSSQDP 336 + + VG R +L V + +I+W+ D GF+ V+IR Q Sbjct: 299 EKNIIYVGEGNTHPGLLRSALFVKK---EDIHWVRPDLALSLGQRMGFQ--VRIRYRQPL 353 Query: 337 VPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 + + G+Y+ F+ + + SGQ +Y + ++G G I Sbjct: 354 QKAHLYLTNSGLYIHFDTPQSAITSGQFASWYLDE----ELIGSGEI 396 >gi|294666592|ref|ZP_06731831.1| tRNA 5-methylaminomethyl-2-thiouridylate -methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603612|gb|EFF47024.1| tRNA 5-methylaminomethyl-2-thiouridylate -methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 378 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 127/374 (33%), Positives = 184/374 (49%), Gaps = 28/374 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+VV +SGGVDSSV A L + G + G+ +Q + A G C A D DA VC Sbjct: 5 RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + + V F + YAAG TP P V CNR VKF L + LGA+ + Sbjct: 61 VLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V G R R++ R D +DQSYFL Q QL FP+GD++K ++R Sbjct: 121 ATGHYAQ----VAHRGGRWRLL-RGADRGKDQSYFLHQLGQTQLAATLFPIGDLEKSTLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A++ GL K DS ICF+ + + + + R A G+I GQ + H G+ Sbjct: 176 RIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINWLGD 313 +T+GQR GL + P +VV D N+ + R+S + +L+ + +W+ Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQTHWVTG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 F C + R Q V DDG V V FE+ + V GQ+ V Y D Sbjct: 294 A----PPARRFSCTAQTRYRQPDEHCTVDVQDDGSVQVRFERPQRAVTPGQSLVLY--DG 347 Query: 373 NEARVLGGGIISGS 386 E LGG +I+ + Sbjct: 348 EE--CLGGAVIAAT 359 >gi|237749060|ref|ZP_04579540.1| tRNA-specific 2-thiouridylase mnmA [Oxalobacter formigenes OXCC13] gi|229380422|gb|EEO30513.1| tRNA-specific 2-thiouridylase mnmA [Oxalobacter formigenes OXCC13] Length = 367 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 128/382 (33%), Positives = 188/382 (49%), Gaps = 35/382 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV+ MSGGVDSSV A LLK GY+V+G+ ++ + + C A QD DA V D Sbjct: 5 KVVIGMSGGVDSSVSAWLLKEQGYEVVGLFMKNWEDDDDGEY---CSARQDWLDAVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I V V ++ ++ V F Y AG TP P V CN +KF L LGA+ + Sbjct: 62 VIGVDIEVVNFAAEYKERVFSEFLREYEAGRTPNPDVLCNAEIKFKAFLDHAVSLGAEQI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R ++ +M + +D +DQSYFL Q+QL FPLG+++K VR Sbjct: 122 ATGHYARVR----ENNGLFELM-KAVDDTKDQSYFLHRLNQKQLSKAIFPLGEIRKTEVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGII 260 +A ++GL A K DS ICF+ + + + R ++ E G I G+ +G+H G+ Sbjct: 177 KIAEKLGLPNAKKKDSTGICFIGERPFRAFLNRY---LSYEPGPIKTPEGKEIGQHVGLS 233 Query: 261 NYTIGQRRGLGVA----------MGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLRE 307 YTIGQR+G+G+ + +V D N+ V+ G L + + Sbjct: 234 FYTIGQRKGIGIGGLKSFKNPDGTSDAWYVARKDIQNNTLYVVQGHDHPWLLSPELIATQ 293 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366 +W+ E+ + VK R Q V + + DD V+F+ + V GQ+ V Sbjct: 294 SSWIAGFSPENQALS-----VKTRYRQKDVAGTLNVKGDDAFSVNFDAPQWAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIISGSKR 388 FY D LGGGII + + Sbjct: 349 FYKGDV----CLGGGIIDNNSK 366 >gi|121635213|ref|YP_975458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis FAM18] gi|166235071|sp|A1KUY0|MNMA_NEIMF RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|120866919|emb|CAM10679.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis FAM18] gi|325130624|gb|EGC53368.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis OX99.30304] gi|325132760|gb|EGC55443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis M6190] gi|325136777|gb|EGC59377.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis M0579] gi|325138645|gb|EGC61204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis ES14902] gi|325204520|gb|ADY99973.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis M01-240355] Length = 367 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 129/383 (33%), Positives = 188/383 (49%), Gaps = 26/383 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++ NP + ++V +SGGVDSSV AALLK+ GY V GV +Q + + C Q Sbjct: 1 MNTTANPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 55 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D I + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 56 DSFDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 115 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 116 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 170 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 171 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 228 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308 +G H G++ YT+GQR+GLG+ GEP FV L KN V+ G L +Y R + Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 284 Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 N L L E + C + R + P + + V F++ + V GQ+ V Sbjct: 285 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCELRYLDEETAELV-FDEPQWAVTPGQSAV 343 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 Y D LGGGII + + Sbjct: 344 LYDGDI----CLGGGIIQTTDKP 362 >gi|329119430|ref|ZP_08248115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria bacilliformis ATCC BAA-1200] gi|327464363|gb|EGF10663.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria bacilliformis ATCC BAA-1200] Length = 365 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 127/372 (34%), Positives = 182/372 (48%), Gaps = 24/372 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 +VV +SGGVDSSV AALLK+ G+ V GV +Q + + C QD +DA V D Sbjct: 8 IVVGLSGGVDSSVTAALLKQQGHSVRGVFMQNWEDDDNDEY---CSIKQDSFDAIAVADI 64 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + + ++ ++++ V F Y+AG TP P V CN +KF L + GADV+A Sbjct: 65 IGIDIDIVNFAAQYKDKVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLDYALEQGADVIA 124 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R + G R + + +D +DQSYFL+ QL FPLG ++K VR Sbjct: 125 TGHYARKEIIGG-----RHCLLKGLDGNKDQSYFLYRLKPHQLERAVFPLGGLEKPEVRR 179 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA L A K DS ICF+ + + + +++ G ++ G+ +G H G+ Y Sbjct: 180 LAEAFKLPTAAKKDSTGICFIGERPFREFLQQYLP--TNPGKMITPEGKTMGEHVGLTFY 237 Query: 263 TIGQRRGLGV-AMGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLREI--NWLGDGLFE 317 TIGQR+GLG+ GEP FV L +N V+ G L +Y + N L L E Sbjct: 238 TIGQRKGLGIGGAGEPWFVAGKNLPRNELLVVQGHDHPL----LYTNSLVMNDLSFTLPE 293 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + C + R + P + D V F+ + V GQ+ V Y D Sbjct: 294 RPKPGRYTCKTRYRMADAPCELRYLDEDTAELV-FDMPQWAVTPGQSAVLYDGDV----C 348 Query: 378 LGGGIISGSKRS 389 LGGGII + + Sbjct: 349 LGGGIIVSTDKP 360 >gi|223986197|ref|ZP_03636216.1| hypothetical protein HOLDEFILI_03526 [Holdemania filiformis DSM 12042] gi|223961834|gb|EEF66327.1| hypothetical protein HOLDEFILI_03526 [Holdemania filiformis DSM 12042] Length = 381 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 126/376 (33%), Positives = 189/376 (50%), Gaps = 28/376 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73 M+++V +SGGVDS+V A LLK+ G DV ++ ++S + G+ C +D Sbjct: 2 MKILVGLSGGVDSAVAAYLLKQQGLDVTCAFMRNWDSMANNDFLGNPNADDDVCPQEKDW 61 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ V D++ + D+ + + + V F Y G TP P + CN+ +KFS L Sbjct: 62 MDAKSVADSLGLELLRVDFVKEYWDNVFSNFLQEYKKGRTPNPDILCNKYIKFSSFLDFA 121 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 R+ G D LATGHY R R G + + DL +DQSYFL L FPLG Sbjct: 122 RRRGFDTLATGHYARVRHEADFSG-----LYKAHDLNKDQSYFLCQVASDALRHTLFPLG 176 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQI 252 +++K VR +A+E+ L IA+K DS ICF+ + + + +K N A G IV ++ ++ Sbjct: 177 EIEKPEVRRIAKELRLSIAEKKDSTGICFIGERNFREFLK--NYLPAKSGKIVDVISRRV 234 Query: 253 LGRHNGIINYTIGQRR-GLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREI 308 LG H G++ YTIGQR+ G P FVV D + ++V ES L + + Sbjct: 235 LGDHEGVLYYTIGQRKGLGIGGEGGPWFVVGKDVVHNELLVASGESNDWLLSDTCLVSGV 294 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVF 367 NWL + A+ C K R Q PV ++ D+ V + + + V GQ VF Sbjct: 295 NWLARTKPQGAL----SCCAKFRYRQKDNPVTLEFLDETTVRLTYPQQVASVTPGQQAVF 350 Query: 368 YTSDSNEARVLGGGII 383 Y + + LGGG+I Sbjct: 351 YLGE----QCLGGGVI 362 >gi|323341801|ref|ZP_08082034.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464226|gb|EFY09419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 372 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 131/376 (34%), Positives = 190/376 (50%), Gaps = 34/376 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73 M+V+V +SGGVDS+V A +LK G+DV ++ ++S + G+ C D Sbjct: 1 MKVLVGLSGGVDSAVAAHILKSQGHDVTCAFMRNWDSFANNDILGNPTIKDDMCSQEVDY 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+RV D + + DY + + + V F + G TP P + CNR VKF Sbjct: 61 DDAKRVADHLGLELLRVDYVKEYWDHVFSFFLAETERGNTPNPDILCNRFVKFDAFYDFM 120 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 G + LATGHY +R DGK M R +D +DQ+YFL + L + FPLG Sbjct: 121 DANGFEALATGHYAITR-----DGK----MYRAVDQNKDQTYFLSRVRPEVLPRVLFPLG 171 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-I 252 + K+ VR +A E+ L +A K DS ICF+ + +Y D +K N +EGDI+ ++ Q + Sbjct: 172 SLTKDEVRRIALELDLPVATKKDSTGICFIGERQYRDFLK--NYLKDVEGDIIDVDTQKV 229 Query: 253 LGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 LG+H G++ YTIGQR GL ++ P FVV D +++R+ VG L + E+ Sbjct: 230 LGKHQGVMFYTIGQRHGLDISTAVGPWFVVGKDLSTNRIYVGKGADHPMLFAGAAEIAEM 289 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVF 367 NW F D VD +C K R Q + V + D+ + V+ V GQ VF Sbjct: 290 NW-----FTDEKVD-LECTAKFRYRQKDIKVRISWLDETRLRVEMIDDVKSVTLGQEAVF 343 Query: 368 YTSDSNEARVLGGGII 383 Y + LGGG I Sbjct: 344 YLGEE----CLGGGRI 355 >gi|224536736|ref|ZP_03677275.1| hypothetical protein BACCELL_01612 [Bacteroides cellulosilyticus DSM 14838] gi|224521652|gb|EEF90757.1| hypothetical protein BACCELL_01612 [Bacteroides cellulosilyticus DSM 14838] Length = 350 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 115/351 (32%), Positives = 175/351 (49%), Gaps = 23/351 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV++ MSGG DSSV A LL+ GY+V GVT + Y+S + + DAR + Sbjct: 6 RVLLGMSGGTDSSVAAMLLQEAGYEVTGVTFRFYDSEGFE---------ESLDDARNLAS 56 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +N+ H ++D E FR +I F Y + TP+PC CN +K+ L + ++G + Sbjct: 57 RLNIPHIIYDARELFRERIIRYFVDEYLSAHTPVPCTLCNNELKWPLLAKIADEMGIYWI 116 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 +TGHY+R V DG + D ++DQ++FL+ Q L + P+GD K VR Sbjct: 117 STGHYVRK---VFRDGY--YFIAPAADRDKDQTFFLWGLQQNILERMLLPMGDWTKNEVR 171 Query: 202 DLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDIVHLNGQILGRHNG 258 A + G + A K DS +CF Y ++R AL +G + +G LG H G Sbjct: 172 AYAAKRGFERTATKKDSLGVCFCPM-DYRSFLQREVPQDALPGKGQFLDESGTFLGWHEG 230 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 YTIGQRRGLG+ + P+FV + K + VI+ P SL + L++ N + Sbjct: 231 YPFYTIGQRRGLGIHLNRPVFVKEIHKERNEVILAPLASLYKEEMLLKDWNIVDTS---- 286 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 +++ V+IR + V D+ ++V + +ASGQA FY Sbjct: 287 RLLNSEDVIVRIRYRKQANHCTVSITDENLLHVLLREPLESIASGQAAAFY 337 >gi|154149044|ref|YP_001406760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter hominis ATCC BAA-381] gi|205811613|sp|A7I2L9|MNMA_CAMHC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|153805053|gb|ABS52060.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter hominis ATCC BAA-381] Length = 368 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 119/383 (31%), Positives = 191/383 (49%), Gaps = 63/383 (16%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR-- 78 M+++VA+SGGVDS+V A +LK GY++ G ++L+ G+D Y A+ Sbjct: 1 MKILVALSGGVDSAVSAKILKDAGYEIEGCYMKLH--------------GRDDYHAKNIE 46 Query: 79 ----VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 V + + + ++ D + F+ V PF +Y G+TP PC CNRT+KF L R Sbjct: 47 KVQDVGNFLEIKTHILDLCDDFKREVFEPFLQTYKVGKTPNPCALCNRTIKFGKFLDFAR 106 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 G D +ATGHY + ++ +DL +DQSYFL + + ++ FPLG+ Sbjct: 107 SKGCDKIATGHYAKI---------ENNLIKSAVDLSKDQSYFLANIEPRVIPNIVFPLGN 157 Query: 195 MKKESVRDLAREMG--LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 M K+ V+ A I+ S+S +ICFV+ Y DV++ G + +L G+I Sbjct: 158 MLKKDVKKFAASFPELEKISKSSESNEICFVEN-TYIDVLREF-YKTETPGIVRNLQGEI 215 Query: 253 LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 +G+HNG +N+T+G+RRG V EP +VV +D + ++VG + L+ + + N Sbjct: 216 VGKHNGYMNFTVGKRRGFDVFGAHEPHYVVKIDAKKNEIVVGSKADLDKNEFETQNFNAF 275 Query: 312 GDGLFEDAVVDGFKCFVKI--RSSQDPVPVFVQRNDD-------GVYVDFEKSEV----- 357 L D ++ + +VKI RS++ + + ND+ ++FE S+ Sbjct: 276 ---LNIDEILKMDEIYVKIRYRSAKIACKIEISLNDNLNNESLTDKNLNFENSDFLNNQD 332 Query: 358 ------------GVASGQACVFY 368 GVASGQ VFY Sbjct: 333 LKAKIILKTPANGVASGQLAVFY 355 >gi|163755895|ref|ZP_02163012.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Kordia algicida OT-1] gi|161324066|gb|EDP95398.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Kordia algicida OT-1] Length = 395 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 123/402 (30%), Positives = 196/402 (48%), Gaps = 48/402 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V +SGGVDSSV A LLK GY+VIG+ ++ ++ + C +D DA V + Sbjct: 3 RVIVGLSGGVDSSVTAYLLKEQGYEVIGLFMKNWHDDSVT-ISNECPWLEDSNDAMIVAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + D E+++ ++ + Y G TP P V CNR +KF L + LGAD + Sbjct: 62 KLGIPFQTVDLSEQYKERIVDYMFNEYEKGRTPNPDVLCNREIKFDVFLKIALDLGADYV 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + +GK+ + D +DQSYFL +Q+QL FP+G++ K VR Sbjct: 122 ATGHYCRKET-IEKNGKQIHKLLAGKDGNKDQSYFLCQLSQEQLEKSLFPIGELTKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------- 248 ++A + L A+K DSQ +CF+ + K D +++ EG IV + Sbjct: 181 EIAAKADLITAEKKDSQGLCFIGKVKLPDFLQQQLQ--PKEGVIVEVPNTIKSYHKELPE 238 Query: 249 --------------------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNS 287 +G+++G+H G +T GQR+GL V EPLFV+ D Sbjct: 239 FASKEEELAFYAQKYTYNQTDGKVVGKHQGAHYFTKGQRKGLAVGGTVEPLFVIETDVEE 298 Query: 288 SRVIVGPRESLE-VHRIYL----REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ 342 + + G +S ++R L E++W+ + L A + + +IR Q + Sbjct: 299 NVIYTGQGKSHPGLYRRTLFVTDDELHWVREDLALQA-DESMEVMARIRYRQPLQKAVLY 357 Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + + G YVDFE + + GQ +Y + ++G G+IS Sbjct: 358 KIEGGAYVDFETPQSAITEGQFVAWYMDE----ELIGSGVIS 395 >gi|254448740|ref|ZP_05062197.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma proteobacterium HTCC5015] gi|198261581|gb|EDY85869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma proteobacterium HTCC5015] Length = 359 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 126/369 (34%), Positives = 188/369 (50%), Gaps = 30/369 (8%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A L GY V G+ ++ N + C A D+ DA++VCD + + Sbjct: 1 MSGGVDSSVTALTLLEQGYHVEGLFMK--NWEEEDPDSAYCPALIDMKDAQQVCDELEIP 58 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 + ++ + + + V F Y+AG TP P V CN+ +KF L LGAD +ATGHY Sbjct: 59 LHKVNFSKEYWDRVFQHFLDEYSAGRTPNPDVMCNKEIKFKAFLDHALGLGADYIATGHY 118 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 +R DD R + + D +DQSYFL Q +L FP+G+M K VR++A Sbjct: 119 VRRV----DDEDGRVHLYQGADKNKDQSYFLHTLGQAELSRALFPIGEMDKSHVREMAMN 174 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT--- 263 G D +K DS ICF+ + ++ D + + A G + L G +LG HNG++ YT Sbjct: 175 AGFDNHEKKDSTGICFIGERRFRDFLSQYLP--AQPGKVEDLEGTVLGDHNGLMYYTIGQ 232 Query: 264 --IGQRRGLGVAMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYL--REINWLGDGLFE 317 GL + GEP +VV L++N +V G E + + +L ++ W+ Sbjct: 233 RQGIGIGGLRNSDGEPWYVVEKDLERNVLKVAQG-SEHPALFKTHLDASQLYWVNQA--P 289 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRND--DGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 DA + +C KIR Q P +++ D D V V F++ + + GQ+ VFY+ + Sbjct: 290 DAPL---RCEAKIRYRQTQQPCTIEQIDGSDAVVV-FDEPQRAITEGQSVVFYSGED--- 342 Query: 376 RVLGGGIIS 384 LGGGII Sbjct: 343 -CLGGGIIE 350 >gi|319940913|ref|ZP_08015251.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sutterella wadsworthensis 3_1_45B] gi|319805629|gb|EFW02417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sutterella wadsworthensis 3_1_45B] Length = 382 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 122/372 (32%), Positives = 182/372 (48%), Gaps = 25/372 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV A LLK GY+VIG+ ++ + S+ C + QD DA V D Sbjct: 21 KVVVGLSGGVDSSVSAWLLKEQGYEVIGLFMKNWEDDDDSEY---CSSRQDFIDATSVAD 77 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + ++ + +++ V F Y+AG TP P + CN +KF L ++GAD + Sbjct: 78 VVGIDIEAVNFAKEYKDRVFSNFLEEYSAGRTPNPDILCNSEIKFRAFLDHAMRMGADWI 137 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + G DG + R +D +DQSYFL +Q+Q+ + FP+G+M K VR Sbjct: 138 ATGHYARVQRPEGVDGPTE--LLRGIDPGKDQSYFLHRLSQEQIARVLFPVGNMFKTDVR 195 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A E+ L A K DS ICF+ + + + + R G I +G+++G H G+ Sbjct: 196 RIAEEISLPNAKKKDSTGICFIGERPFREFLNRYLP--TQPGPIRTPDGKVVGEHVGLAF 253 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGD 313 YT+GQR+G+GV + GEP FV D ++ + + L H + +W+ Sbjct: 254 YTLGQRKGIGVGGQHDSTGEPWFVAKKDLKTNTLWICQGHDHPWLLSHELICVRPSWISG 313 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVAS-GQACVFYTSD 371 E V+ R Q P +D S A+ GQ+ V Y D Sbjct: 314 HAPEPNT----PVTVRTRYRQPDEPTRLAAVGAQAFTLDCTDSPQWAATPGQSAVLYQGD 369 Query: 372 SNEARVLGGGII 383 LGGG I Sbjct: 370 V----CLGGGFI 377 >gi|288575004|ref|ZP_06393361.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570745|gb|EFC92302.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 349 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 129/370 (34%), Positives = 177/370 (47%), Gaps = 38/370 (10%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D RV++ +SGGVDS A LL+R GY+ IGV L L +D D R+ Sbjct: 6 DRRVLLGVSGGVDSCAAALLLRRSGYEPIGVRLILKEK-------------EDRLDEARL 52 Query: 80 --CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 +++ + D + FR++V+ PF +Y TP PCV CN VKF L + G Sbjct: 53 KGLNSLGIPVVEIDGRKAFRSSVVEPFLEAYERSITPNPCVLCNERVKFRLLFEEADRRG 112 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 + TGHY + Y G + R +DQSY L+ + L L FPL ++ K Sbjct: 113 IHTVGTGHYAGTTPYRGGSA-----ISRAEIGGKDQSYMLYRLPSEWLDRLIFPLENLSK 167 Query: 198 ESVRDLA-REMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVHLNGQILG 254 VRDL RE + DSQDICF+ + D R AG G ++ L+G +LG Sbjct: 168 PEVRDLVFREFDDEELKSGDSQDICFIPGSLDSFLDENLREEAG---PGPMISLDGDVLG 224 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 RH G+ YT GQR+GLG+ G P FVV D++ + +I+G V RI + W Sbjct: 225 RHRGLCRYTEGQRKGLGLG-GGPWFVVRKDRSENALILGRETDTSVVRIGFSMLKW---- 279 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + V +G + R P+P V R N V EKS GVA GQ+ V Y Sbjct: 280 --QHKVNEGSVYLAQHRYRSAPIPAVVSRLNQGSAEVLLEKSARGVALGQSLVLYDGPC- 336 Query: 374 EARVLGGGII 383 +LGGG+I Sbjct: 337 ---LLGGGVI 343 >gi|293604355|ref|ZP_06686762.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Achromobacter piechaudii ATCC 43553] gi|292817232|gb|EFF76306.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Achromobacter piechaudii ATCC 43553] Length = 360 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 124/374 (33%), Positives = 181/374 (48%), Gaps = 30/374 (8%) Query: 25 VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84 + MSGGVDSSV A LLK+ GY+V+G+ ++ + S+ C QD+ DA V D + Sbjct: 1 MGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQDLLDAASVADLVG 57 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 V ++ +++ V F Y+AG TP P V CN +KF L LGA+ +ATG Sbjct: 58 VEFEFVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGAEHIATG 117 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY R R + G + + + +D +DQSYFL Q QL FPLGD+ K VR +A Sbjct: 118 HYARVREVPAEGGGTQFQLLKALDASKDQSYFLHRLNQAQLSRTLFPLGDIHKTEVRRIA 177 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGIINYT 263 E+GL A K DS ICF+ + + + + R + E G I+ GQ +GRH G+ YT Sbjct: 178 HEIGLHNAAKKDSTGICFIGERPFREFLNRY---LPTEPGPILTPEGQQVGRHEGLSFYT 234 Query: 264 IGQR----------RGLGVAMGEPLFVVY--LDKNSSRVIVGP-RESLEVHRIYLREINW 310 +GQR R E +V L++N V+ G L ++ ++ +W Sbjct: 235 LGQRKGLGVGGVKGRQREDGTAEAWYVARKDLERNILYVVQGHDHPWLLSSQLQAQDASW 294 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYT 369 + + + K R Q + + DG + +DFE + V GQ+ V Y Sbjct: 295 VAG---HPPAIASYGA--KTRYRQADAACRLDQAADGTFALDFEVPQWAVTPGQSAVLYD 349 Query: 370 SDSNEARVLGGGII 383 D LGGGII Sbjct: 350 GDV----CLGGGII 359 >gi|167895830|ref|ZP_02483232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 7894] Length = 339 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 114/325 (35%), Positives = 158/325 (48%), Gaps = 22/325 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L LGA + Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + D + R G + +G+ +G H G+ Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAF 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGD 313 YT GQR+G+G+ GEP FV D N+ V+ G L + ++W+ Sbjct: 235 YTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVP 338 + DG +C K R Q P Sbjct: 295 ----EPPADGARCGAKTRYRQADAP 315 >gi|260171966|ref|ZP_05758378.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides sp. D2] Length = 350 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 120/379 (31%), Positives = 184/379 (48%), Gaps = 59/379 (15%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGG+DS+ +L+ GY+++GVT++++ G + DAR + + + Sbjct: 1 MSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARELAVRMGIE 46 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 HYV D F+ ++ F Y G TP PCV CN KF L +L +ATGHY Sbjct: 47 HYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNCAWIATGHY 106 Query: 147 IR-------SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 R + + GDD K +DQSYFL+ Q+ L FPLGD K Sbjct: 107 SRLEEKNGYTYIVAGDDDK------------KDQSYFLWRLGQEVLKRCIFPLGDYTKVK 154 Query: 200 VRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGR 255 VR+ E G + K +S ++CF+ +G Y D ++ + E G V+ G LG+ Sbjct: 155 VREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPEMDSEIGPGWFVNSEGVKLGQ 213 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H G YTIGQR+GL +A+G+P +V+ ++ + V++G + L + Sbjct: 214 HKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLNTEYMLAE--------- 264 Query: 316 FEDAVVDGFKCF------VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 +D +VD + F V+IR P+P V+R +DG + V F ++ +A GQ+ VFY Sbjct: 265 -QDKIVDEQELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAIAPGQSAVFY 323 Query: 369 TSDSNEARVLGGGIISGSK 387 RVLGG I+ + Sbjct: 324 DG----RRVLGGAFIASQR 338 >gi|325134641|gb|EGC57281.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis M13399] gi|325144816|gb|EGC67105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis M01-240013] gi|325205709|gb|ADZ01162.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis M04-240196] Length = 367 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 129/383 (33%), Positives = 188/383 (49%), Gaps = 26/383 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++ NP + ++V +SGGVDSSV AALLK+ GY V GV +Q + + C Q Sbjct: 1 MNTTANPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 55 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D I + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 56 DSFDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 115 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 116 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 170 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 171 LGGLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 228 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308 +G H G++ YT+GQR+GLG+ GEP FV L KN V+ G L +Y R + Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 284 Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 N L L E + C + R + P + + V F++ + V GQ+ V Sbjct: 285 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCELRYLDEETAELV-FDEPQWAVTPGQSAV 343 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 Y D LGGGII + + Sbjct: 344 LYDGDI----CLGGGIIQTTDKP 362 >gi|313203848|ref|YP_004042505.1| tRNA (5-methylaminomethyL-2-thiouridylate)-methyltransferase [Paludibacter propionicigenes WB4] gi|312443164|gb|ADQ79520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paludibacter propionicigenes WB4] Length = 346 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 120/374 (32%), Positives = 181/374 (48%), Gaps = 42/374 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARRV 79 R+++ MSGG DSSV A LL GY+VIG+T + + G++ + DA ++ Sbjct: 4 RILLGMSGGTDSSVAAILLLEQGYEVIGITFRFWEE------------GENFHLQDAVKL 51 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + H +D E FR V+ F Y +G TP PCV CN +K+ +L +LG D Sbjct: 52 AGQLGIQHVTYDAREVFRANVVQYFMDEYLSGRTPFPCVKCNNELKWKLILEEADRLGCD 111 Query: 140 VLATGHYI----RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 +A GHY+ Y +GK D E+DQS+FL+ TQ QL + FPLG Sbjct: 112 KVAMGHYVNIIQEDNHYFVTEGK---------DPEKDQSFFLWGLTQAQLSRIVFPLGQF 162 Query: 196 KKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINA---GIALEGDIVHLNGQ 251 K VR +A G +++K DS CF G Y +K+ A G+ + G Sbjct: 163 HKTDVRAMAAVRGYKKVSEKKDSLGACFC-SGDYRPFLKKQLAEPDKYIYPGNFMDEEGN 221 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 +LG H+G YT+GQRRGL + + +FV + ++ V++ P S+ +R++N + Sbjct: 222 VLGTHDGFPLYTVGQRRGL-IHLNRKVFVKEIRPETNDVVLAPLRSMYKTEFLIRDVNVV 280 Query: 312 GDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 LF F +IR Q+ + V + V+ + +A GQ VFY Sbjct: 281 DKSLFSSE----FDVLCRIRYRKQNTLSRVVFLENRTARVELSEPLESIAPGQTAVFY-- 334 Query: 371 DSNEARVLGGGIIS 384 + R+LGGG IS Sbjct: 335 --RDGRILGGGFIS 346 >gi|294625260|ref|ZP_06703899.1| tRNA 5-methylaminomethyl-2-thiouridylate -methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600434|gb|EFF44532.1| tRNA 5-methylaminomethyl-2-thiouridylate -methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 378 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 127/374 (33%), Positives = 184/374 (49%), Gaps = 28/374 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+VV +SGGVDSSV A L + G + G+ +Q + A G C A D DA VC Sbjct: 5 RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + + V F + YAAG TP P V CNR VKF L + LGA+ + Sbjct: 61 LLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V G R R++ R D +DQSYFL Q QL FP+GD++K ++R Sbjct: 121 ATGHYAQ----VAHRGGRWRLL-RGADRGKDQSYFLHQLGQTQLAATLFPIGDLEKSTLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A++ GL K DS ICF+ + + + + R A G+I GQ + H G+ Sbjct: 176 RIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINWLGD 313 +T+GQR GL + P +VV D N+ + R+S + +L+ + +W+ Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 F C + R Q V DDG V V FE+ + V GQ+ V Y D Sbjct: 294 A----PPARRFSCTAQTRYRQPDEHCTVDVQDDGSVQVRFERPQRAVTPGQSLVLY--DG 347 Query: 373 NEARVLGGGIISGS 386 E LGG +I+ + Sbjct: 348 EE--CLGGAVIAAT 359 >gi|167764091|ref|ZP_02436218.1| hypothetical protein BACSTE_02474 [Bacteroides stercoris ATCC 43183] gi|167698207|gb|EDS14786.1| hypothetical protein BACSTE_02474 [Bacteroides stercoris ATCC 43183] Length = 350 Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 115/359 (32%), Positives = 176/359 (49%), Gaps = 33/359 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARRV 79 RV++ MSGG DSSV A L+ GY+V GVT + Y G+ Y DAR + Sbjct: 6 RVLLGMSGGTDSSVAAMKLQEAGYEVTGVTFRFYE-----------VGGKTEYLEDARAL 54 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + H +D E FR +I F Y AG TP+PC CN +K+ L + + G Sbjct: 55 AGRLGIEHITYDARELFRERIIRYFIDEYLAGHTPVPCTLCNNELKWKLLAEIADEKGIY 114 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++TGHY+R +L++ D+ + +D ++DQ++FL+ Q L + P+GDM KE Sbjct: 115 WISTGHYVR-KLFLEDN----YYIAPAVDRDKDQTFFLWGLKQDILQRMLLPMGDMTKED 169 Query: 200 VRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-----GDIVHLNGQIL 253 R A E G + +A K DS +CF D + + +E G + G +L Sbjct: 170 ARAYAAERGFMRVAAKKDSIGVCFCP----LDYRSFLKREVPMEQLPGRGHFLDEKGNVL 225 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G H G YTIGQRRGLG+ + +FV + ++ V++ P SL +YL++ N + Sbjct: 226 GWHEGYPFYTIGQRRGLGIHLNRAVFVKEVRMETNEVVLAPLASLYKKEMYLKDWNLIS- 284 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 V+ VKIR + V + ++G + V + +A GQA FY +D Sbjct: 285 ---AHRVLGAETVIVKIRYRKQANRCMVAQEENGHLRVSLLEPLESIAPGQAAAFYDAD 340 >gi|91790389|ref|YP_551341.1| tRNA-specific 2-thiouridylase MnmA [Polaromonas sp. JS666] gi|91699614|gb|ABE46443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Polaromonas sp. JS666] Length = 421 Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 129/406 (31%), Positives = 191/406 (47%), Gaps = 42/406 (10%) Query: 6 ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65 ++R N +DK R+VV +SGGVDS+V A LLK+ G++VIG+ ++ + S+ Sbjct: 13 SSRDNRTPMDKQHSKQRIVVGLSGGVDSAVTAYLLKQQGHEVIGIFMKNWEDDDDSE--- 69 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 C + D DA V D I + ++ +++ V F Y AG TP P + CN +K Sbjct: 70 YCSSNIDFVDAAAVADVIGIEIEHVNFAADYKDRVFAEFLREYQAGRTPNPDILCNAEIK 129 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F L +LGA+ +ATGHY R R ++ + + +D +DQSYFL Q QL Sbjct: 130 FKAFLDHAMRLGAEKIATGHYARVRR---NESTGLHELLKGLDPAKDQSYFLHRLNQAQL 186 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+G++ K VR +A E+GL A K DS ICF+ + + D + R A G I Sbjct: 187 SKTLFPVGELHKTEVRRIADEIGLPNAKKKDSTGICFIGERPFRDFLNRYIA--KAPGPI 244 Query: 246 VHLNGQILGRHNGIINYTIGQRRGL---------------------GVAMGEPLFVVY-- 282 + G++LG+H G+ YT+GQR+GL GV EP FV Sbjct: 245 KNDRGRVLGKHVGLSFYTLGQRQGLGIGGVKARGAELKAAQARGQRGVGEHEPWFVARKD 304 Query: 283 LDKNSSRVIVGP-RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQ-DPVPVF 340 LD N+ V+ G L+ + ++ +W+ A G K R Q D Sbjct: 305 LDTNTLWVVQGHDHPWLQSTVLSAQDCSWVAG----TAPAAGLMA-AKTRYRQVDATCEL 359 Query: 341 VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 + F + + V GQ+ V Y D LGGG+I+ S Sbjct: 360 RSATTANCELVFAEPQWAVTPGQSAVLYQGDV----CLGGGVIAAS 401 >gi|257463089|ref|ZP_05627490.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Fusobacterium sp. D12] gi|317060688|ref|ZP_07925173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. D12] gi|313686364|gb|EFS23199.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. D12] Length = 345 Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 97/292 (33%), Positives = 160/292 (54%), Gaps = 25/292 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++ MSGGVDS+V A LL+++GY+VI V ++N+ K ++ D +++ D Sbjct: 4 KVILGMSGGVDSAVAAYLLQKEGYEVIAVHFSVHNTEATQK---------ELQDCQKIAD 54 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ Y + E+ FR +I + S G+TP PC C+ ++KF L + A+ + Sbjct: 55 KFSLTLYSYSLEKEFREKIISYYLSETGKGKTPSPCPLCDDSIKFHLLFQEAEKRKANYV 114 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLE------RDQSYFLFATTQQQLCDLRFPLGDM 195 ATGHY R +C LE +DQ Y L+ + ++L + FPL + Sbjct: 115 ATGHYASIS---------RNNICNTTLLEVKHHIHKDQCYMLYRLSPKKLNKILFPLASL 165 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR+LAR++GL +++K DSQ ICF +G Y + +K+ A +G+ + G ILG+ Sbjct: 166 EKAEVRELARDIGLFVSEKKDSQGICFAPEG-YQNFLKKHLAKKIQKGNFIDEKGNILGQ 224 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 H G YT+GQRRGLG+ E F+ +D + + +G ESL ++ L + Sbjct: 225 HLGYPLYTLGQRRGLGIKTKEICFITKIDPGKNEITLGNFESLMKDKVQLED 276 >gi|325299223|ref|YP_004259140.1| tRNA-specific 2-thiouridylase mnmA [Bacteroides salanitronis DSM 18170] gi|324318776|gb|ADY36667.1| tRNA-specific 2-thiouridylase mnmA [Bacteroides salanitronis DSM 18170] Length = 379 Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 126/389 (32%), Positives = 185/389 (47%), Gaps = 49/389 (12%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD RV+V MSGG+DSS +L+ GY+V+GVT++ ++ G ++ +A+ Sbjct: 3 KDKRVLVGMSGGIDSSATCIMLQEQGYEVVGVTMRTWDIPSHFSTPGQE-QPDEILEAQA 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + H+V D E FR ++ F Y G TP PCV CN K L + G Sbjct: 62 VAARLGIEHHVADVREEFRKVIVQYFIDEYMRGRTPNPCVLCNPLFKERILCEWADRTGC 121 Query: 139 DVLATGHY--IRSR-----LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 +ATGHY I R + GDD +DQSYFL+ Q+ L + FP Sbjct: 122 QWIATGHYCQIEKRNGWFYIVTGDDAT------------KDQSYFLWKLPQEILSRMLFP 169 Query: 192 LGDMKKESVRDLAREMGLDIADK-SDSQDICFVQQG-KYF------DVVKRINAGIALEG 243 LG M K+ VR+ G + K +S +ICF+ + + F D+ +RI G Sbjct: 170 LGGMTKDKVREYLAHKGFEAKAKGGESMEICFIDKDYREFLREHCPDIDERIGPGW---- 225 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 V G LG+H G YTIGQR+GLG+A+GEP +V+ ++ + V++G + L + Sbjct: 226 -FVDSKGVKLGQHKGFAYYTIGQRKGLGIALGEPAYVLKINPEKNTVMLGDADQLRTEYM 284 Query: 304 YLREINWLGDGLFEDAVVDGFKC---FVKIRSSQDPVPVFVQRNDDGVY--VDFEKSEVG 358 L + + + C V+IR P+P V R + Y V F Sbjct: 285 -------LAEPPVAPDIEELLACPNLSVRIRYRSRPIPCQVVRLPENGYLLVRFAVEASA 337 Query: 359 VASGQACVFYTSDSNEARVLGGGIISGSK 387 + GQ+ VFY D N RVLGG I+ + Sbjct: 338 ITPGQSAVFY--DGN--RVLGGSFIASQQ 362 >gi|167957606|ref|ZP_02544680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [candidate division TM7 single-cell isolate TM7c] Length = 340 Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 125/371 (33%), Positives = 181/371 (48%), Gaps = 40/371 (10%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+V V MSGGVDSS+ AALL G++V GV ++ ++ + C D+ DA+RV Sbjct: 1 MKVFVGMSGGVDSSLTAALLIERGHNVTGVYMKNWSQDLPGMK---CPWADDLADAKRVA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + V+D+E+ +R V+ S+Y+ G TP P + CN+ VKF L GAD+ Sbjct: 58 VQLGIDLKVYDFEKEYRENVVEYMISAYSQGYTPNPDIMCNQEVKFKLFLETALADGADM 117 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY +R R M D +DQ+YFL+ T Q L FPLG+ K+ V Sbjct: 118 IATGHYATTR-------DNRLFMAS--DANKDQTYFLYRVTSQALSKTFFPLGEYTKQKV 168 Query: 201 RDLAREMGLDIADKSDSQDICFVQQ-------GKYFDVVKRINAGIALEGDIV-HLNGQI 252 R ++ + L A K DSQ ICFV + +Y D GDI+ G+ Sbjct: 169 RQMSEDRHLFTAKKKDSQGICFVGKIGIREFLSQYVD---------TKPGDIIDQKTGKK 219 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G H+G I YTIGQR GL + G P +VV + S+ V V + + I+ E Sbjct: 220 IGTHDGAIFYTIGQRHGLNIGGGLPYYVVGKNMQSNEVYVS--NDINHNGIWRSETKIES 277 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + DG +IR V + + G V F++ + +A GQ+ V Y + Sbjct: 278 KHWINNVPKDG-NYLARIRHRAPLVKITLL----GSKVIFDEPQRAIAPGQSVVIYDGE- 331 Query: 373 NEARVLGGGII 383 LGGGII Sbjct: 332 ---ECLGGGII 339 >gi|21242742|ref|NP_642324.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas axonopodis pv. citri str. 306] gi|24638307|sp|Q8PL08|MNMA_XANAC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|21108220|gb|AAM36860.1| tRNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306] Length = 378 Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 125/374 (33%), Positives = 183/374 (48%), Gaps = 28/374 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+VV +SGGVDSSV A L + G + G+ +Q + A G C A D DA VC Sbjct: 5 RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + + V F + YAAG TP P V CNR VKF L + LGA+ + Sbjct: 61 VLGIPFHFRDFSGEYWSDVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + V G R R++ R D +DQSYFL Q QL FP+GD++K ++R Sbjct: 121 ATGHYAQ----VAHRGGRWRLL-RGADRGKDQSYFLHQLGQTQLAATLFPIGDLEKSTLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A++ GL K DS ICF+ + + + + R A G+I GQ + H G+ Sbjct: 176 RIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYLR--EINWLGD 313 +T+GQR GL + P +VV D N+ + R+S + +L+ + +W+ Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 F C + R Q V DDG V V FE+ + V GQ+ V Y + Sbjct: 294 A----PPARRFSCTAQTRYRQPDESCTVDVQDDGSVQVRFERPQRAVTPGQSLVLYDGEE 349 Query: 373 NEARVLGGGIISGS 386 LGG +I+ + Sbjct: 350 ----CLGGAVIAAT 359 >gi|89902516|ref|YP_524987.1| tRNA-specific 2-thiouridylase MnmA [Rhodoferax ferrireducens T118] gi|122478272|sp|Q21RZ7|MNMA_RHOFD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|89347253|gb|ABD71456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodoferax ferrireducens T118] Length = 384 Score = 176 bits (445), Expect = 7e-42, Method: Compositional matrix adjust. Identities = 128/398 (32%), Positives = 191/398 (47%), Gaps = 42/398 (10%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K RVVV +SGGVDS+V A LLK+ GY+VIG+ ++ + S+ C + D Sbjct: 1 MNKRHSGQRVVVGLSGGVDSAVTAWLLKQQGYEVIGIFMKNWEDDDDSE---YCSSNVDF 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA V D I + ++ +++ V F Y AG TP P + CN +KF L Sbjct: 58 IDAAAVADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDILCNAEIKFKAFLDHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGD----DGKRRRI------MCRPMDLERDQSYFLFATTQQ 183 +LGA +ATGHY R R D D + ++ + + +D +DQSYFL Q Sbjct: 118 LRLGAQKIATGHYARVRCVAADGRVLDAAQAQMSDGRFELLKGLDPSKDQSYFLHRLNQA 177 Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE- 242 QL FP+G++ K VR LA E+GL A K DS ICF+ + + D + R IA E Sbjct: 178 QLSKTLFPVGELLKTEVRRLALEIGLPNAKKKDSTGICFIGERPFRDFLNRY---IAREP 234 Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGV----------AMGE--PLFVVYLD--KNSS 288 G I G+ +G+H G+ YT+GQR+GLG+ GE P FV D N+ Sbjct: 235 GPIKDDKGRTIGQHVGLSFYTLGQRQGLGIGGLKAKGAQRGGGEHAPWFVARKDLATNTL 294 Query: 289 RVIVGPRES-LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG 347 V+ G L+ H + ++ +W+ + K R Q P + Sbjct: 295 WVVQGHEHPWLQSHGLSAQDASWVA-----GTAPQAGRFSAKTRYRQLDAPCTLAAGAGA 349 Query: 348 VY-VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + + F + + V GQ+ V Y ++ LGGG+I+ Sbjct: 350 AFHLSFPEPQWAVTPGQSAVLY----DDEVCLGGGVIA 383 >gi|212692631|ref|ZP_03300759.1| hypothetical protein BACDOR_02128 [Bacteroides dorei DSM 17855] gi|212664916|gb|EEB25488.1| hypothetical protein BACDOR_02128 [Bacteroides dorei DSM 17855] Length = 375 Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 121/388 (31%), Positives = 193/388 (49%), Gaps = 44/388 (11%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVY 74 N +D RV+V MSGG+DSS +L+ GY+V+GVT++ ++ SR ++ + DV Sbjct: 2 NNRDKRVLVGMSGGIDSSATCIMLQEQGYEVVGVTMRTWDIPSRFSTPGQDE---PDDVL 58 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 +A+ + + + + H+V D + F+ ++ F Y G TP PCV CN K L Sbjct: 59 EAKALAERLGIEHHVADVRKEFKQIIVKHFIDEYMQGRTPNPCVLCNPLFKERILCEWAD 118 Query: 135 QLGADVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 Q ++TGHY R +LY+ GDD +DQSYFL+ Q+ L Sbjct: 119 QTNCAHISTGHYCRLEERKGKLYIVAGDDQT------------KDQSYFLWKLPQEILQR 166 Query: 188 LRFPLGDMKKESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALE---G 243 FPLG K+ VR+ R+ G + A +S +ICF+ +G Y + ++ I + G Sbjct: 167 FLFPLGTYTKQEVREYLRQKGFEAKARGGESMEICFI-EGDYRNFLRSQCPDIDTQVGPG 225 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 V+ G +G+H G YTIGQR+GL +A+G P +V+ ++ + V++G E L+ + Sbjct: 226 WFVNSKGVKIGQHKGFPYYTIGQRKGLEIALGHPAYVLRINAEKNTVMLGDAEELKAEYM 285 Query: 304 YLREINWLGDGLFEDAVVDGFKC---FVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGV 359 + + + + D +C V+IR P+P V D+ + V F + Sbjct: 286 LVEDYHI-------TEMQDLLQCKDLSVRIRYRSKPIPCQVLVLDEKQLLVRFLSEASAI 338 Query: 360 ASGQACVFYTSDSNEARVLGGGIISGSK 387 A GQ+ VFY RVLGG I+ + Sbjct: 339 APGQSAVFYEG----KRVLGGAFIASQR 362 >gi|265752582|ref|ZP_06088151.1| tRNA methyl transferase [Bacteroides sp. 3_1_33FAA] gi|263235768|gb|EEZ21263.1| tRNA methyl transferase [Bacteroides sp. 3_1_33FAA] Length = 375 Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 189/386 (48%), Gaps = 40/386 (10%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N +D RV+V MSGG+DSS +L+ GY+V+GVT++ ++ G DV +A Sbjct: 2 NNRDKRVLVGMSGGIDSSATCIMLQEQGYEVVGVTMRTWDVPSRFSTPGQD-EPDDVLEA 60 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + + + + + H+V D + F+ ++ F Y G TP PCV CN K L Q Sbjct: 61 KALAERLGIEHHVADVRKEFKQIIVKHFIDEYMQGRTPNPCVLCNPLFKERILCEWADQT 120 Query: 137 GADVLATGHYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 ++TGHY R +LY+ GDD +DQSYFL+ Q+ L Sbjct: 121 NCAHISTGHYCRLEERKGKLYIVAGDDQT------------KDQSYFLWKLPQEILQRFL 168 Query: 190 FPLGDMKKESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDI 245 FPLG K+ VR+ R+ G + A +S +ICF+ +G Y + ++ I + G Sbjct: 169 FPLGTYTKQEVREYLRQKGFEAKARGGESMEICFI-EGDYRNFLRSQCPDIDTQVGPGWF 227 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 V+ G +G+H G YTIGQR+GL +A+G P +V+ ++ + V++G E L+ + + Sbjct: 228 VNSKGVKIGQHKGFPYYTIGQRKGLEIALGHPAYVLRINAEKNTVMLGDAEELKAEYMLV 287 Query: 306 REINWLGDGLFEDAVVDGFKC---FVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVAS 361 + + + D +C V+IR P+P V D+ + V F +A Sbjct: 288 EDYHI-------TEMQDLLQCKDLSVRIRYRSKPIPCQVLVLDEKQLLVRFLSEASAIAP 340 Query: 362 GQACVFYTSDSNEARVLGGGIISGSK 387 GQ+ VFY RVLGG I+ + Sbjct: 341 GQSAVFYEG----KRVLGGAFIASQR 362 >gi|310827792|ref|YP_003960149.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium limosum KIST612] gi|308739526|gb|ADO37186.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium limosum KIST612] Length = 343 Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 119/368 (32%), Positives = 184/368 (50%), Gaps = 30/368 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ +V+V SGG DS+ +LK GY+V+GVT + + + K S A Q Sbjct: 2 KNKKVIVGFSGGADSAAAVLILKNKGYEVLGVTFDFFGNEPLLE-KASVLAKQ------- 53 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 I + H + + FR VI PF S Y G TP PCV C+ +KF L++ + A Sbjct: 54 ----IGIQHECINRQREFREKVIKPFISEYLRGYTPNPCVRCDAGMKFRGLMAYANEKEA 109 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPM-DLERDQSYFLFATTQQQLCDLRFPLGDMK- 196 + +ATGHY+R + + ++ + D +DQSY+L+ Q+ L L FPL + Sbjct: 110 EFIATGHYLRL------EKRHGQVQIKTSEDSRKDQSYYLYTLDQEYLSRLIFPLSAFQS 163 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K++VR + G+ + +SQ ICF+ G Y +K+ + EG G+ILG H Sbjct: 164 KDAVRAFLEKEGIALPKSEESQGICFIPDGNYARFIKK-ETPLMPEGRFRDRFGKILGSH 222 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 NG YT+GQ+RG+ V G+ V L + VI+G L +I+L+E++++ L+ Sbjct: 223 NGFYYYTVGQKRGVPVISGKKYVVTALRPEFNEVILGEESDLYQKKIFLKELHFIDGSLY 282 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + FK V P + + + G Y++ EK+ GQ+ VFY D R Sbjct: 283 SGEIQ--FK--VCRWGYLYPGRLHLSGDRRG-YLECEKAVRAPMPGQSAVFYDGD----R 333 Query: 377 VLGGGIIS 384 +LGGGII Sbjct: 334 LLGGGIIE 341 >gi|71908904|ref|YP_286491.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dechloromonas aromatica RCB] gi|123626679|sp|Q47AW0|MNMA_DECAR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71848525|gb|AAZ48021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dechloromonas aromatica RCB] Length = 365 Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 127/378 (33%), Positives = 193/378 (51%), Gaps = 36/378 (9%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV +SGGVDSSV A LLK+ G++VIG+ ++ + + C + QD+ D V D Sbjct: 6 VVVGLSGGVDSSVAALLLKQQGWNVIGLFMKNWEDDDTEE---YCSSRQDLIDVMSVADK 62 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + V ++ +R V F S Y AG TP P + CN +KF L QLGA+ +A Sbjct: 63 IGIDVEVVNFAAEYRERVFAEFLSEYQAGRTPNPDILCNSEIKFKAFLDHAMQLGAEKIA 122 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R + DGK + + + D +DQSYFL+ Q QL FPL D+ K VR Sbjct: 123 TGHYAGVREF---DGKFQ--LLKAEDGTKDQSYFLYRLNQAQLSKTLFPLADIYKRDVRK 177 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGIIN 261 +A GL +A K DS ICF+ + + D + R +G+I L +G+++G H+G++ Sbjct: 178 IAEAEGLHVAAKKDSTGICFIGERPFKDFLSRYLP--PKKGEIRRLDDGKVMGEHDGLMF 235 Query: 262 YTIGQRRGLGVA----MGEP-------LFVVY--LDKNSSRVIVGP-RESLEVHRIYLRE 307 +T+GQR+GL + G P FV ++KN V+ G +L + + Sbjct: 236 HTMGQRKGLHIGGIKEKGHPGGGDHDAWFVAGKDMEKNVLYVVQGHDHPALLKGDLVAEQ 295 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366 ++W+ V + + R+S P V+R D + + F + + + GQ+ V Sbjct: 296 LSWVSGNEPHTHWV--YTAKPRYRTSDQPCE--VERVDAESCEIRFAEPQWALTPGQSVV 351 Query: 367 FYTSDSNEARV-LGGGII 383 Y E+RV LGGG+I Sbjct: 352 LY-----ESRVCLGGGVI 364 >gi|313899166|ref|ZP_07832687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium sp. HGF2] gi|312956035|gb|EFR37682.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium sp. HGF2] Length = 393 Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 124/376 (32%), Positives = 190/376 (50%), Gaps = 29/376 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 +V++ +SGGVDS+V A LLK GYDV ++ ++S + G+ C QD Sbjct: 11 KVLLGLSGGVDSAVAAYLLKEQGYDVTCAFMRNWDSFANNDIMGNPTIQDDVCPQEQDYL 70 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ V D + + D+ + + + V F Y G TP P + CN+ +KF + R Sbjct: 71 DAKAVADKLGLPLLRVDFVKEYWDHVFTYFLEEYRKGRTPNPDILCNKYIKFDAFMDYAR 130 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 +LG D LATGHY + D M R D +DQ+YFL +Q L FP+G Sbjct: 131 RLGFDTLATGHYAQV-----DHSAEESRMLRGADNNKDQTYFLCQVSQDALRHSMFPIGH 185 Query: 195 MKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QI 252 M+K+ VR++A M L+ +A+K DS ICF+ + + + +K N + +GDI+ + ++ Sbjct: 186 MEKQEVREIAERMELNSVAEKKDSTGICFIGERNFKEFLK--NYLPSRDGDIMDIKTLEV 243 Query: 253 LGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLD--KNSSRVIVGPR-ESLEVHRIYLREI 308 +GRH+G++ YTIGQR+GLG+ P FVV D KN V G + L + + Sbjct: 244 VGRHSGVLYYTIGQRKGLGIGGNRGPWFVVGKDVQKNILYVTNGSESDWLHSDSCIVSGV 303 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVF 367 NW + V C K R Q V ++ D+ V++ + + V +GQ VF Sbjct: 304 NWFSSERPQGDYV----CTAKFRYRQPDNDVILRFIDETTVFLRYPQMVSSVTAGQEAVF 359 Query: 368 YTSDSNEARVLGGGII 383 Y + LGGG+I Sbjct: 360 YQKEE----CLGGGVI 371 >gi|317154023|ref|YP_004122071.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfovibrio aespoeensis Aspo-2] gi|316944274|gb|ADU63325.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfovibrio aespoeensis Aspo-2] Length = 349 Score = 175 bits (444), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 118/363 (32%), Positives = 170/363 (46%), Gaps = 21/363 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+ VA+SGG+DS + AL++ G++V+ V + S S + + A C Sbjct: 1 MKTAVAVSGGMDSLLALALMRAGGHEVLAVHGRFLPSGPDSDKAIAGLA--------EAC 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + V +V D F V+ PFA +Y G TP PC CN +KF L LGAD Sbjct: 53 ARLGVPLHVADLRREFEREVVAPFADAYRQGRTPNPCAVCNPRMKFGALFRFALSLGADA 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R + + G ++ R D ++DQSYFL + L FPLGD+ K V Sbjct: 113 LATGHYAR----LEERGPSGLLLTRGGDPDKDQSYFLSLVPIETLRRAHFPLGDICKRDV 168 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 + +GL +SQ+ICFV Y + R + G I +G ++GRH G+ Sbjct: 169 PETLAGLGLTPPLPGESQEICFVPGDDYQTFLTR-RGNMPGTGPIRLEDGTVIGRHKGLW 227 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +T GQRRGLG+A EPL+V+ + +IVGP+ SL ++N++ D V Sbjct: 228 RHTQGQRRGLGIAWTEPLYVLDKRVADNTLIVGPKPSLHAPGCVAWQVNFMTDPAGWPEV 287 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 V ++ R Q P + + F + A GQ Y VLGG Sbjct: 288 V-----MLQTRYRQRARPARFAVDGSRLVFHFIEEHTRPAPGQVAAVY---DEAGAVLGG 339 Query: 381 GII 383 G+I Sbjct: 340 GVI 342 >gi|120613352|ref|YP_973030.1| tRNA-specific 2-thiouridylase MnmA [Acidovorax citrulli AAC00-1] gi|166991120|sp|A1TWB8|MNMA_ACIAC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|120591816|gb|ABM35256.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidovorax citrulli AAC00-1] Length = 378 Score = 175 bits (444), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 125/389 (32%), Positives = 193/389 (49%), Gaps = 34/389 (8%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + +PK R+VV +SGGVDS+V A LLK+ G++V+G+ ++ + S+ C + D Sbjct: 1 MTASPK-QRIVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---YCSSNVDF 56 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA V D I + ++ +++ V F Y AG TP P V CN +KF L Sbjct: 57 VDAAAVADVIGIEIEHVNFAAEYKDRVFAEFLREYEAGRTPNPDVLCNAEIKFKAFLDHA 116 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 ++GA+ +ATGHY R R + + + +D +DQSYFL Q QL FP+G Sbjct: 117 MRVGAEKIATGHYARVRH---NPATGLHELLKGLDPAKDQSYFLHRLNQSQLSRTLFPVG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR +A E+GL A K DS ICF+ + + + + R G I+ G+ L Sbjct: 174 ELRKTEVRRIAEEIGLPNAKKKDSTGICFIGERPFREFLNRYIQ--HAPGPILDDRGRRL 231 Query: 254 GRHNGIINYTIGQRRGLGV----------AMGE--PLFVV--YLDKNSSRVIVGP-RESL 298 G+H G+ YT+GQR+GLG+ GE P FV +++N RV+ G L Sbjct: 232 GQHVGLSFYTLGQRQGLGIGGVKDKGAQRGGGEHAPWFVARKEVERNVLRVVQGHDHPWL 291 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEV 357 H + + NW+ G A C K R Q V + + G + + F +++ Sbjct: 292 LSHTLQATDANWVA-GRPPAAGA----CAAKTRYRQQDAACTVTQAEGGDFALSFPEAQW 346 Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGS 386 V GQ+ V Y + LGGG+I+ + Sbjct: 347 AVTPGQSAVLYDGEV----CLGGGVITAA 371 >gi|325066902|ref|ZP_08125575.1| tRNA-specific 2-thiouridylase MnmA [Actinomyces oris K20] Length = 384 Score = 175 bits (444), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 134/393 (34%), Positives = 185/393 (47%), Gaps = 49/393 (12%) Query: 32 DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTINVSHYV 89 DS+V AA G++V+GV + L +R A R GS CC+ +D DAR + + YV Sbjct: 1 DSAVAAARAVDAGHEVVGVHMALTRNR-AQTRSGSRGCCSIEDSADARWAAQILGIPFYV 59 Query: 90 FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIR- 148 +D E F V+ F Y AG TP PCV CN VKF LL LG D +ATGHY R Sbjct: 60 WDLSEEFEERVVSDFLDEYRAGRTPNPCVRCNERVKFDALLERALALGFDAVATGHYARL 119 Query: 149 ----SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDL 203 S + GD + R +D +DQSY L + ++ L FPLGD K VR Sbjct: 120 SGGASSGHPGD--PEGLTLRRAVDAAKDQSYVLAVSGREGLARALFPLGDAPSKAQVRAE 177 Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263 A GL +A K DS DICFV G + R A EG +V +G++LG H G +T Sbjct: 178 AEARGLPVASKPDSYDICFVADGDTRGFLTRSLG--AHEGTMVSPDGEVLGTHQGYFGFT 235 Query: 264 IGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF--- 316 +GQR+GLG++ G P +V+ ++ V+VGP E L + GDGL Sbjct: 236 VGQRKGLGLSHPAEDGRPRYVIETRPATNEVVVGPEELLSRTAVD-------GDGLVLLA 288 Query: 317 -----------------EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG---VYVDFEKSE 356 V + V++R+ PVP V R D ++ + Sbjct: 289 DPEPLTTGPDTGTTDSDGSPAVGWQEASVQVRAHGRPVPAMV-RVDAAQGLLHAELATPL 347 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389 GVA+GQ+ V Y D + +VL ++ + S Sbjct: 348 RGVAAGQSLVIYGGDDGD-QVLAQATVASAPAS 379 >gi|47093434|ref|ZP_00231199.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes str. 4b H7858] gi|47018213|gb|EAL08981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes str. 4b H7858] Length = 333 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 115/332 (34%), Positives = 170/332 (51%), Gaps = 20/332 (6%) Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 G C A +D D RV + I + +Y ++E+ + + V F Y G TP P V CN+ + Sbjct: 11 GVCTATEDYDDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEI 70 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 KF L LGAD +ATGHY + + VGD+ + + R +D +DQ+YFL +Q Q Sbjct: 71 KFKAFLEHAESLGADYVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQDQ 125 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 L + FPLG M+K VR++A++ GL A+K DS ICF+ + + + A G+ Sbjct: 126 LKKVMFPLGGMEKTEVREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGE 183 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEV 300 + LNG++LG+H+G++ YTIGQR GLG+ GEP FVV D + + V E+L Sbjct: 184 MRTLNGEVLGKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYS 243 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGV 359 + +I++ + + +C K R Q V V +DG V F + Sbjct: 244 DSLIATDISFTTNAEKPKTI----ECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAI 299 Query: 360 ASGQACVFYTSDSNEARVLGGGIISGSKRSDA 391 GQA VFY D LGGG I ++ A Sbjct: 300 TPGQAVVFYDGDI----CLGGGTIDTVWKNGA 327 >gi|33593833|ref|NP_881477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bordetella pertussis Tohama I] gi|33600935|ref|NP_888495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bordetella bronchiseptica RB50] gi|81423057|sp|Q7U359|MNMA_BORPE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|81423064|sp|Q7U387|MNMA_BORBR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|33563906|emb|CAE43165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bordetella pertussis Tohama I] gi|33568535|emb|CAE32447.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bordetella bronchiseptica RB50] Length = 371 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 125/384 (32%), Positives = 186/384 (48%), Gaps = 28/384 (7%) Query: 14 LDKNP-KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72 + NP + RVVV MSGGVDSSV A LLK+ GY+V+G+ ++ + S+ C QD Sbjct: 1 MPSNPTRKGRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQD 57 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 + DA V D + V ++ +++ V F Y+AG TP P V CN +KF L Sbjct: 58 LLDAASVADLVGVEFEYVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDH 117 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 LGA+ +ATGHY R R G R +++ + +D +DQSYFL Q QL FPL Sbjct: 118 AMALGAEHIATGHYARVRTVETPAGPRHQLL-KALDDTKDQSYFLHRLNQVQLARTLFPL 176 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR +A E+GL A K DS ICF+ + + + + R + G I+ GQ Sbjct: 177 GELRKTEVRRIAHEIGLHNAAKKDSTGICFIGERPFREFLNRYLP--SEPGPILTPEGQR 234 Query: 253 LGRHNGIINYTIGQR------------RGLGVAMGEPLFVVYLDKNSSRVIVGP-RESLE 299 +G H+G+ YT+GQR R G A L +N V+ G L Sbjct: 235 VGTHHGLSFYTLGQRKGLGVGGVKGRQRDDGTAEAWYAARKDLARNVLYVVQGHDHPWLL 294 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV 359 ++ ++ +W+ E + + R + D Q + + FE+++ V Sbjct: 295 SAQLQAQDASWIAG---EPPAAGAYGAKTRYRQA-DAACRLDQAGGERFALAFEQAQWAV 350 Query: 360 ASGQACVFYTSDSNEARVLGGGII 383 GQ+ V Y + LGGGII Sbjct: 351 TPGQSAVLYDGEV----CLGGGII 370 >gi|150021435|ref|YP_001306789.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermosipho melanesiensis BI429] gi|205828980|sp|A6LNA3|MNMA_THEM4 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|149793956|gb|ABR31404.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermosipho melanesiensis BI429] Length = 339 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 111/351 (31%), Positives = 179/351 (50%), Gaps = 31/351 (8%) Query: 40 LKRDGYDVIGVTLQ-----LYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEE 94 +K+ GY V L+ LY +++ + CC+ D +DA++V V + E Sbjct: 1 MKKKGYAVTAYHLKTVPDSLYLTKQIKHK--VCCSPSDTFDAKKVAQKFGVELKIIHVEN 58 Query: 95 RFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVG 154 FR +I F + Y G TP PC CN +KF LL Q G D +A+GHY R Sbjct: 59 VFRETIIKYFINEYKRGRTPNPCFFCNDWIKFGVLLERIIQDGNDYVASGHYALLR---- 114 Query: 155 DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADK 214 DGK + + + E+DQSYFL + +++L L FP G+ K+ +R++A+++ + I K Sbjct: 115 -DGK----LYKAKNKEKDQSYFLASIKREKLGYLVFPNGEYNKDEIRNIAKDLNIHIHSK 169 Query: 215 SDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM 274 DSQD+CF+ + +K G EG I+ G ILG H G+ NYTIGQR+ +G+A+ Sbjct: 170 EDSQDLCFIPDNNIYGFLKENGVGFK-EGLIIDTKGNILGTHKGLSNYTIGQRK-IGIAV 227 Query: 275 GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQ 334 E ++V+ D + ++VG + + ++ + ++N+L D V + +VK+R Sbjct: 228 RERMYVLRKDFEKNLLVVGKKGEVFNNKFTVSKLNFLQD------VYKKIEGYVKVRKKF 281 Query: 335 DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385 V V ++D +YV+ + + GQ V Y D G I+SG Sbjct: 282 KEVKCRVYVDNDNLYVETREPIFAITPGQIAVIYDED-------GAVIVSG 325 >gi|320528367|ref|ZP_08029529.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Solobacterium moorei F0204] gi|320131281|gb|EFW23849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Solobacterium moorei F0204] Length = 382 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 118/362 (32%), Positives = 181/362 (50%), Gaps = 25/362 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 +V+V +SGGVDS+V A LL++ GYDV ++ ++S G+ C D Sbjct: 3 KVLVGLSGGVDSAVAAYLLQQQGYDVTCAFMRNWDSVANEDFSGNPTLYDPVCPQEADYK 62 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA V + + D+ + + + V F Y G TP P + CNR +KF + + Sbjct: 63 DAADVAAKLGLELLRIDFIKEYWDDVFQTFIDEYKLGRTPNPDILCNRYIKFDSFMKFAK 122 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 + G D++ATGHY R +G++G ++C+ +D +DQSYFL ++ L + FPLG+ Sbjct: 123 EKGFDIVATGHYAR----LGEEG-NHHVLCKAVDHNKDQSYFLTEIRREVLEHVLFPLGE 177 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QIL 253 ++K VR +A E+GL IA K DS ICF+ + ++ + + N GDI+ + Q + Sbjct: 178 IEKPEVRRIAEELGLSIAKKKDSTGICFIGERRFREFLG--NYLPMKSGDIIDVTTKQKV 235 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLD--KNSSRVI-VGPRESLEVHRIYLREINW 310 G H G++ YTIGQR+GL + P FVV D KN V+ ++ L + +NW Sbjct: 236 GIHQGVMYYTIGQRKGLDIGGIGPFFVVGKDVYKNELYVVDANHQDLLYATSCLVTGVNW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD-FEKSEVGVASGQACVFYT 369 L D +C K R Q V + N+DG F + + GQ VFY Sbjct: 296 LADRTLP------LQCHAKFRYRQADNDVELVLNEDGTLTALFPEGIRSITPGQEAVFYD 349 Query: 370 SD 371 D Sbjct: 350 GD 351 >gi|329954114|ref|ZP_08295209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides clarus YIT 12056] gi|328528091|gb|EGF55071.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides clarus YIT 12056] Length = 350 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 117/356 (32%), Positives = 178/356 (50%), Gaps = 24/356 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N K+ RV++ MSGG DSSV A L+ GY+V GVT + Y + + + + DA Sbjct: 2 NSKE-RVLLGMSGGTDSSVTAMKLQEAGYEVTGVTFRFYEADGKA---------EYLEDA 51 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + D + + H ++D + FR +I F Y AG TP+PC+ CN +K+ L + + Sbjct: 52 RTLADRLGIEHIIYDARKLFRERIIRYFIDEYLAGHTPVPCILCNNELKWKLLAEIADEK 111 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 G ++TGHY+R +L + D + D ++DQ++FL+ Q L + P+GDM Sbjct: 112 GIYWISTGHYVR-KLLLEDT----YYIAPAADRDKDQTFFLWGLKQDILKRMLLPMGDMT 166 Query: 197 KESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDIVHLNGQIL 253 KE R A G + +A K DS +CF Y +KR L G + G+IL Sbjct: 167 KEEARAYAAGRGFMRVATKKDSIGVCFCPL-DYRSFLKREVPAEQLPGRGHFLDEKGEIL 225 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G H G YTIGQRRGLG+ + +FV + +++ V++ P SL + +YL++ N + Sbjct: 226 GWHEGYPFYTIGQRRGLGLHLNRAVFVKEIKMDTNEVVLAPLASLYKNEMYLKDWNLIST 285 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 V+ VKIR + V DG + V + +A GQA FY Sbjct: 286 ----HRVLGAETVIVKIRYRKQANRCMVTLEGDGHLRVSLLEPLESIAPGQAAAFY 337 >gi|319779294|ref|YP_004130207.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Taylorella equigenitalis MCE9] gi|317109318|gb|ADU92064.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Taylorella equigenitalis MCE9] Length = 371 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 120/379 (31%), Positives = 189/379 (49%), Gaps = 29/379 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV A LLK GYDV+GV ++ + S+ C QD D V D Sbjct: 5 KVVVGLSGGVDSSVSAYLLKEQGYDVLGVFMKNWEDDDDSE---FCSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 T+ + ++ +++ V F Y+AG TP P V CN +KF L GAD + Sbjct: 62 TLGIDVDAVNFATEYKDRVFSDFLREYSAGRTPNPDVLCNAEIKFKAFLDYAMNTGADFI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G GK +++ + +D +DQSYFL Q QL + FP+G++ K VR Sbjct: 122 ATGHYARVRAIDGPSGKTYQLL-KGLDPNKDQSYFLHRLNQDQLSKVIFPVGELLKTKVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++ L A K DS ICF+ + + + + + G I+ +G+++G H G+ Sbjct: 181 EIAEKLNLSNAKKKDSTGICFIGERPFREFLNKYLP--TKPGPILTDSGELIGEHVGLSF 238 Query: 262 YTIGQRRGLGV----------AMGEPLFVVYLD-KNSSRVIVGPRES--LEVHRIYLREI 308 YTIGQR+G+G+ + + +V D KN++ +V + L ++Y + Sbjct: 239 YTIGQRKGIGIGGVKSHMSLDGVSDAWYVARKDMKNNTLYVVNGHDHPWLLSKKLYALDA 298 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVF 367 +W+ + + + + R + + F Q + + F + + V GQ+ V Sbjct: 299 SWINE---YTPSIGTYAAKTRYRQADASCELEFAQGLE--FKLKFSEDQWAVTPGQSAVL 353 Query: 368 YTSDSNEARVLGGGIISGS 386 Y D LGGGII S Sbjct: 354 YDGDV----CLGGGIIEQS 368 >gi|323700751|ref|ZP_08112663.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfovibrio sp. ND132] gi|323460683|gb|EGB16548.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfovibrio desulfuricans ND132] Length = 345 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 118/365 (32%), Positives = 168/365 (46%), Gaps = 26/365 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + VA+SGG+DS + ALLK G ++ V A + + AG C Sbjct: 1 MTIAVAVSGGMDSLLALALLKERGEPLLAVHGHFLPPSPAWETVTTGLAG--------AC 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + V + D F + VI PF + Y AG TP PC CN +KF L R LGA+ Sbjct: 53 AVLGVPFHALDLHASFDDRVIKPFVAEYKAGLTPNPCAMCNPRMKFGVLFDAARNLGAER 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY+ +D + R++ R D +DQSYFL ++L FPL K V Sbjct: 113 LATGHYVSM-----EDRAQGRMLVRGADQSKDQSYFLSMVPVEKLRLAEFPLARTLKRDV 167 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 + GL K++SQ+ICFV Y + + G V +G+++G H G+ Sbjct: 168 PAVLAAHGLTPPLKAESQEICFVPDDDYQHFLTS-RGDMPGPGPAVLPDGRVVGGHQGLW 226 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +T GQRRGLG+A EPL+V+ D + +IVGP+E L ++N + Sbjct: 227 RHTQGQRRGLGIAWSEPLYVLEKDVPGNTLIVGPKEFLAAKGCVAGQVNLM-------CP 279 Query: 321 VDGFK--CFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 V+ + V+ R Q P V+ +Y DF + GQ Y VL Sbjct: 280 VESWPGTVLVQTRYRQKAKPARVRLTGGRLYFDFLEPHTRPTPGQVAAVYDESGT---VL 336 Query: 379 GGGII 383 GGG+I Sbjct: 337 GGGVI 341 >gi|308491228|ref|XP_003107805.1| hypothetical protein CRE_12780 [Caenorhabditis remanei] gi|308249752|gb|EFO93704.1| hypothetical protein CRE_12780 [Caenorhabditis remanei] Length = 378 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 124/377 (32%), Positives = 194/377 (51%), Gaps = 25/377 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVV+ MSGGVDS+V A LLKR G+DVIGV + ++S++ +C +D DAR VCD Sbjct: 5 RVVIGMSGGVDSAVSAFLLKRRGFDVIGVHMVNWDSQEEGT--SNCPRSKDESDARNVCD 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 +N+ + ++ + + N V + F +Y G T +P +DCN +KFS V ++ AD Sbjct: 63 KLNIPFHTVNFVKEYWNDVFLRFLENYKMGRTVVPDIDCNHFIKFSAFHKVAQERFDADF 122 Query: 141 LATGHYIRSRLYVGDDGKRRRI-----MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 +ATGHY + GD + R + D +DQ++FL TQ+QL FPLG + Sbjct: 123 IATGHYATTSF--GDFQQSRNASEEIRLFSGRDPLKDQTFFLCTVTQEQLKRAMFPLGSL 180 Query: 196 KKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQIL 253 +K V+ +A + G ++A K +S ICFV + K F + ++ I + G IV NG+ + Sbjct: 181 QKTEVKRIAEQEGFHEVAKKPESMGICFVGKKKRFS--EFLDEYIEPKSGKIVLKNGKKI 238 Query: 254 GRHNGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLR 306 G H+GI +TIG+R G + E FV ++ + ++ +L R + Sbjct: 239 GNHHGIHQFTIGKRIN-GTYLEERSHFGFFVSEINSETGDIVACEGSHHPNLYATRFLIN 297 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 +W+ + + +I+ + PV V+ +D+ + V A GQ CV Sbjct: 298 RPSWISNSDDPLKSHPPSEILCRIQRTHPPVSCLVEYSDENLSVIPRIPLRATAPGQMCV 357 Query: 367 FYTSDSNEARVLGGGII 383 FYT+ NE LGGG I Sbjct: 358 FYTT-KNEC--LGGGEI 371 >gi|332168761|gb|AEE18016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Krokinobacter diaphorus 4H-3-7-5] Length = 397 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 126/404 (31%), Positives = 196/404 (48%), Gaps = 52/404 (12%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV +SGGVDSSV A LLK GY+VIG+ ++ ++ + C D DA V + Sbjct: 4 VVVGLSGGVDSSVTAHLLKEQGYNVIGLFMKNWHDDSVTISD-ECPWLDDSNDAMLVAEK 62 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + D E++R ++ Y G TP P V CNR +KF + + LGAD +A Sbjct: 63 LGIPFQTVDLSEQYRERIVNYMFKEYEMGRTPNPDVLCNREIKFDVFMKIALSLGADYVA 122 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + + + DGK + D +DQSYFL +Q+QL FP+G ++K VR+ Sbjct: 123 TGHYCQ-KTSIEVDGKTMYQLKAGADDNKDQSYFLCQLSQEQLAKTLFPIGHLQKPKVRE 181 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVK---RINAGIALE----------------- 242 +A E L A K DSQ +CF+ + + D ++ + G+ +E Sbjct: 182 IALEQDLVTAGKKDSQGLCFIGKVRLPDFLQQQLKPKEGVIVEVMEDTIPEVAGGMEASN 241 Query: 243 ----GDIVHL---------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSS 288 D+ +L G+++G+H G +TIGQR+GL V EPLFV+ D + + Sbjct: 242 AFAKADLENLVKKPTYSVAEGKVVGKHQGAHYFTIGQRKGLAVGGTVEPLFVIDTDVDEN 301 Query: 289 RVIVGPRESLEVHRIYLR--------EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF 340 + G ++ HR R EI+W+ + L AV + + +IR Q Sbjct: 302 VIYTGQGKN---HRGLYRKGLFVKEEEIHWIREDL-TLAVDETMEVEARIRYRQPLEKAT 357 Query: 341 VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + R + G+YV F+ + +A GQ ++ + LG G+IS Sbjct: 358 LYRVEGGMYVIFDNPQTAIAEGQFVAWHHGE----ECLGSGVIS 397 >gi|311105115|ref|YP_003977968.1| methyltransferase [Achromobacter xylosoxidans A8] gi|310759804|gb|ADP15253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Achromobacter xylosoxidans A8] Length = 372 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 129/383 (33%), Positives = 184/383 (48%), Gaps = 30/383 (7%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+ K RVVV MSGGVDSSV A LLK+ GY+V+G+ ++ + S+ C QD+ D Sbjct: 4 KSTKKGRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQDLLD 60 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A V D + V ++ +++ V F Y+AG TP P V CN +KF L Sbjct: 61 AASVADLVGVEFEFVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMA 120 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGA+ +ATGHY R R G + + + +D +DQSYFL Q QL FPLG++ Sbjct: 121 LGAEHIATGHYARVREVPAVGGGTQFQLLKALDASKDQSYFLHRLNQAQLSRTMFPLGEI 180 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILG 254 K VR +A E+GL A K DS ICF+ + + + + R + E G I+ GQ +G Sbjct: 181 HKTEVRRIAHEIGLHNAAKKDSTGICFIGERPFREFLNRY---LPTEPGPIMTPEGQKVG 237 Query: 255 RHNGIINYTIGQR----------RGLGVAMGEPLFVVY--LDKNSSRVIVGP-RESLEVH 301 RH G+ YT+GQR R E +V L++N V+ G L Sbjct: 238 RHEGLSFYTLGQRKGLGVGGVKGRQREDGTAEAWYVARKDLERNVLYVVQGHDHPWLLSG 297 Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVA 360 + ++ +W+ G A G K R Q + DG + + F + + V Sbjct: 298 ELRAQDASWVA-GHAPAAGTYG----AKTRYRQADAACRLDGAVDGTFSLGFTEPQWAVT 352 Query: 361 SGQACVFYTSDSNEARVLGGGII 383 GQ+ V Y + LGGGII Sbjct: 353 PGQSAVLYDGEV----CLGGGII 371 >gi|150025823|ref|YP_001296649.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Flavobacterium psychrophilum JIP02/86] gi|205816862|sp|A6H0G9|MNMA_FLAPJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|149772364|emb|CAL43842.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Flavobacterium psychrophilum JIP02/86] Length = 395 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 120/402 (29%), Positives = 202/402 (50%), Gaps = 48/402 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDSSV A LL+ GY+VIG+ ++ ++ + C +D DA V + Sbjct: 3 RVVVGLSGGVDSSVAAYLLQEQGYEVIGLFMKNWHDDSVT-ISNECPWLEDSNDALLVAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + D ++++ ++ S Y G TP P V CNR +KF + + LGAD + Sbjct: 62 KLGIPFQTVDLSQQYQEKIVDYMFSEYKKGRTPNPDVLCNREIKFDVFMKIALSLGADYV 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + + DGK + +D +DQSYFL +Q+QL FP+G++ K VR Sbjct: 122 ATGHYCR-KGEIEVDGKPVYQLLAGVDDNKDQSYFLCQLSQEQLAKSLFPIGELTKPQVR 180 Query: 202 DLAREMGLDIADKSDSQDICFV---------------QQGKYFDV--------VKRIN-- 236 ++A ++ L A+K DSQ +CF+ ++G F+V ++IN Sbjct: 181 EIATKIELVTAEKKDSQGLCFIGKVRLPEFLQQQLKPKEGLIFEVDATNQIYNQEKINFD 240 Query: 237 ---AGIALEGDIVHLN---GQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSR 289 +A E + +++G+H G +TIGQR+GL V E LF++ + ++ Sbjct: 241 SVQEKLAFEAKDIQYTPEVAKVVGKHQGAHYFTIGQRKGLNVGGTKEALFIISTNVETNA 300 Query: 290 VIVG---PRESLEVHRIYLR--EINWLGDGLFEDAVVDG--FKCFVKIRSSQDPVPVFVQ 342 + G L +++ EI+W+ L A+ +G + +IR Q+ + Sbjct: 301 IYTGQGHKHPGLFKKALFVTNDEIHWIRPDL---ALTNGQTIQVMARIRYRQELQKATLH 357 Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + ++G+YV+FE + + GQ ++ D ++G G+IS Sbjct: 358 QFENGLYVEFETPQSAITQGQFVSWHIGD----ELIGSGVIS 395 >gi|153807264|ref|ZP_01959932.1| hypothetical protein BACCAC_01542 [Bacteroides caccae ATCC 43185] gi|149130384|gb|EDM21594.1| hypothetical protein BACCAC_01542 [Bacteroides caccae ATCC 43185] Length = 365 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 116/384 (30%), Positives = 183/384 (47%), Gaps = 37/384 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV++ MSGG DSSV A L GY+VIGVT + Y ++ + + DAR Sbjct: 4 ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFYELNGST---------EYLEDARS 54 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + H +D E F +I F Y AG TP+PC CN +K+ L + ++G Sbjct: 55 LAEHLGIRHITYDAREVFNKQIIEYFVQEYMAGRTPVPCTLCNNYLKWPLLAELADEMGI 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY+R ++ + D + D ++DQ++FL+ Q L + P+GD+ K Sbjct: 115 FYIATGHYVR-KVKLEDT----YYITSAADSDKDQTFFLWGLKQDILRRMLLPMGDITKV 169 Query: 199 SVRDLAREMGL-DIADKSDSQDICFV-------------QQGKYFDVVKRINAGIALEGD 244 R LA E G +A K DS +CF + + F + + I G Sbjct: 170 EARALAAERGFRKVATKKDSLGVCFCPMDYRSFLKNWLDKNDQLFTAHGQKWSEIVRRGR 229 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 V G + H G YTIGQRRGLG+ + P+FV + + +++ P +SLE ++ Sbjct: 230 FVDETGHFIAWHEGYPFYTIGQRRGLGIHLNRPVFVKDIFPEKNEIVLAPLQSLEKTEMW 289 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 L N + E+ V+ VKIR Q+ + +++ + +A GQ Sbjct: 290 LDNWNLIN----ENRVLGCSDIIVKIRYRKQENHGTVTVTPEHLLHIQLHEPLTAIAPGQ 345 Query: 364 ACVFYTSDSNEARVLGGGIISGSK 387 A FY D +LGGGII ++ Sbjct: 346 AAAFYKDDL----LLGGGIIVKAR 365 >gi|195867812|ref|ZP_03079812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|195660509|gb|EDX53766.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] Length = 350 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 106/285 (37%), Positives = 156/285 (54%), Gaps = 21/285 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-------NSRKASKRKGSCCAGQDVY 74 RVV+ +SGGVDSSV A LLK+ GY+VIG+ + + N+R++ K+ C + D Sbjct: 8 RVVIGLSGGVDSSVSALLLKQQGYEVIGLFMANWDTVANFENNRESDKKHQGCESELDYQ 67 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ V I + Y ++ + + N V F S Y TP P + CN+ +KF L+ + Sbjct: 68 DAQAVAQKIGIPLYRVEFIKEYWNNVFEYFLSEYQKNRTPNPDILCNQFIKFDSFLNYAK 127 Query: 135 -QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +L AD +A GHY + + + + D+ +DQ+YFL Q QL + FP+G Sbjct: 128 NELKADYIAMGHYAKVK-----HTNNLSYLLKATDVNKDQTYFLCNLKQTQLQNALFPIG 182 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFV--QQGKYFDVVKRINAGIALEGDIVHL-NG 250 D+ K+ VR +A+E GL A+K DS ICF+ + KYF N G+IV++ N Sbjct: 183 DLTKQQVRTIAKEYGLVTANKKDSTGICFIGERNFKYF----LENYIPNQPGEIVNIVNN 238 Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP 294 QI+G H G + YTIGQR+GL + M E +FV D N + V P Sbjct: 239 QIVGHHMGTMYYTIGQRKGLNLGGMNERMFVCEKDINKKIIYVSP 283 >gi|121606705|ref|YP_984034.1| tRNA-specific 2-thiouridylase MnmA [Polaromonas naphthalenivorans CJ2] gi|205816918|sp|A1VTY5|MNMA_POLNA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|120595674|gb|ABM39113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Polaromonas naphthalenivorans CJ2] Length = 394 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 123/397 (30%), Positives = 187/397 (47%), Gaps = 40/397 (10%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 +DK R+VV +SGGVDS+V A LLK+ G++VIG+ ++ + S+ C + D Sbjct: 1 MDKQHSKQRIVVGLSGGVDSAVTAYLLKQQGHEVIGIFMKNWEDDDDSE---FCSSNIDF 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA V D I + ++ +++ V F Y AG TP P + CN +KF L Sbjct: 58 VDAAAVADVIGIEIEHVNFAANYKDRVFAEFLREYQAGRTPNPDILCNAEIKFKAFLDHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +LGA+ +ATGHY R R ++ + + +D +DQSYFL Q QL FP+G Sbjct: 118 MRLGAEKIATGHYARVRQ---NEATGLHELLKGLDPSKDQSYFLHRLNQAQLSKTLFPVG 174 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++ K VR +A E+GL A K DS ICF+ + + D + R A G + + G+IL Sbjct: 175 ELHKTEVRRIADEIGLPNARKKDSTGICFIGERPFRDFLNRYIA--KAPGPVKNDQGRIL 232 Query: 254 GRHNGIINYTIGQRRGL---------------------GVAMGEPLFVVY--LDKNSSRV 290 G H G+ YT+GQR+GL GV EP FV +D N+ V Sbjct: 233 GEHVGLSFYTLGQRQGLGIGGVKARGADLKAAQARGQRGVGEHEPWFVARKDMDSNTLWV 292 Query: 291 IVGP-RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY 349 + G L+ + ++ +W+ + + R + D V G Sbjct: 293 VQGHDHPWLQSTLLNAQDCSWVAG---SAPALGAMAAKTRYRQA-DAACELVSATAGGCE 348 Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 + F ++ V GQ+ V Y + LGGG+I+ S Sbjct: 349 LAFLDAQWAVTPGQSAVLYQGEV----CLGGGVIASS 381 >gi|33597091|ref|NP_884734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bordetella parapertussis 12822] gi|81423061|sp|Q7U375|MNMA_BORPA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|33566542|emb|CAE37798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bordetella parapertussis] Length = 371 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 125/384 (32%), Positives = 185/384 (48%), Gaps = 28/384 (7%) Query: 14 LDKNP-KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72 + NP + RVVV MSGGVDSSV A LLK+ GY+V+G+ ++ + S+ C QD Sbjct: 1 MPSNPTRKGRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQD 57 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 + DA V D + V ++ +++ V F Y+AG TP P V CN +KF L Sbjct: 58 LLDAASVADLVGVEFEYVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDH 117 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 LGA+ +ATGHY R R G R +++ + +D +DQSYFL Q QL FPL Sbjct: 118 AMALGAEHIATGHYARVRTVETPAGPRHQLL-KALDDTKDQSYFLHRLNQAQLARTLFPL 176 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR +A E+GL A K DS ICF+ + + + + R + G I+ GQ Sbjct: 177 GELRKTEVRRIAHEIGLHNAAKKDSTGICFIGERPFREFLNRYLP--SEPGPILTPEGQR 234 Query: 253 LGRHNGIINYTIGQR------------RGLGVAMGEPLFVVYLDKNSSRVIVGP-RESLE 299 +G H+G+ YT+GQR R G A L +N V+ G L Sbjct: 235 VGTHHGLSFYTLGQRKGLGVGGVKGRQRDDGTAEAWYAARKDLARNVLYVVQGHDHPWLL 294 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV 359 ++ ++ +W+ E + + R D Q + + FE+++ V Sbjct: 295 SAQLQAQDASWIAG---EPPAAGAYGAKTRYRQV-DAACRLDQAGGERFALAFEQAQWAV 350 Query: 360 ASGQACVFYTSDSNEARVLGGGII 383 GQ+ V Y + LGGGII Sbjct: 351 TPGQSAVLYDGEV----CLGGGII 370 >gi|218887924|ref|YP_002437245.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226704770|sp|B8DRE0|MNMA_DESVM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|218758878|gb|ACL09777.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 351 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 126/366 (34%), Positives = 177/366 (48%), Gaps = 16/366 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ VA+SGG DS LL G DV G+ + R A + G+ + + +C Sbjct: 1 MKIAVALSGGTDSLFALLLLLEQGQDVFGLHARFLPPR-ADQPSGNPDPAEAIGA---MC 56 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + V + D + F AV+ PF Y G TP PC CN T+KF LL R LGA Sbjct: 57 ARLGVDFHAVDLADAFEEAVVAPFIEEYVVGRTPNPCARCNATMKFGLLLDAARALGAAR 116 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY+R + + + R D +DQSYFL + +L FPLG+ +KE V Sbjct: 117 LATGHYVRQLRHP----QWGMTLQRGADPAKDQSYFLSLVDRARLEQAVFPLGNWRKEQV 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 + + + S+SQ+ICFV Y ++ + G IV + G+ +G H G+ Sbjct: 173 KAELVKRNIVPPLPSESQEICFVPGDDYRAFLRDRQVRLPGPGPIVTMRGRKIGSHKGLW 232 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YT GQRRGLG+A EPL+VV D ++ ++VG RE L ++N L D A Sbjct: 233 QYTEGQRRGLGIAWEEPLYVVSKDMENNVLLVGGREHLAARGCLTEDVNLLVDPADWPAE 292 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 + V+ R Q P P V D G+ V F + + A GQ Y + E VL G Sbjct: 293 IS-----VRTRYRQAPQPARVTVGDTGMAVRFREPQTPPARGQVAAVYDA---EGHVLAG 344 Query: 381 GIISGS 386 G+I G Sbjct: 345 GVILGP 350 >gi|268536380|ref|XP_002633325.1| Hypothetical protein CBG06062 [Caenorhabditis briggsae] Length = 377 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 121/378 (32%), Positives = 198/378 (52%), Gaps = 28/378 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVV+ MSGGVDS+V A LLK+ G+DV+G+ + ++S++ +C +D DAR VC+ Sbjct: 5 RVVIGMSGGVDSAVSAFLLKQKGFDVVGLHMINWDSQEEGS--STCPRSKDEADARNVCN 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 +N+ + ++ + + N V + F +Y G T +P +DCN ++KF V ++ AD Sbjct: 63 RLNIPFHTVNFVKEYWNHVFLKFLENYKIGRTTVPDIDCNYSIKFDAFHKVAQETFDADF 122 Query: 141 LATGHYIRSRLYVGDDGKRRRI-----MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 +ATGHY + GD + R+ + D +DQ++FL TQ+QL FPLG + Sbjct: 123 IATGHYATTSF--GDFQQNRKHSEAIRLFSGRDPLKDQTFFLCTVTQEQLKRAMFPLGSL 180 Query: 196 KKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQIL 253 +K V+ +A + G + K +S ICF+ + K F ++ I + G IV +G+ + Sbjct: 181 QKSEVKRIAEQQGFHRVVKKPESMGICFIGKKKRFSDF--LDEYIEPKPGRIVLKDGKQI 238 Query: 254 GRHNGIINYTIGQR---RGLGVAMGEPLFVVYLDKNSSRVIV--GPRES-LEVHRIYLRE 307 G+H+GI +TIG+R + L FV + ++ V+ G S L R + Sbjct: 239 GKHHGIHQFTIGKRIHGKYLNERSHFGFFVSEIRSDTGDVVACNGSHHSDLYATRFLINR 298 Query: 308 INWL--GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 NW+ D L E + K +I+ + PVP V++++ + V+ + + GQ C Sbjct: 299 PNWIPSSDPLEE---ISPSKILCRIQRTHPPVPCKVEKSEHYLSVEPKIPLRATSPGQMC 355 Query: 366 VFYTSDSNEARVLGGGII 383 VFYT+ E LGGG I Sbjct: 356 VFYTT---ENECLGGGEI 370 >gi|162447421|ref|YP_001620553.1| tRNA-specific 2-thiouridylase MnmA [Acholeplasma laidlawii PG-8A] gi|205810979|sp|A9NFP7|MNMA_ACHLI RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|161985528|gb|ABX81177.1| tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase [Acholeplasma laidlawii PG-8A] Length = 375 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 122/387 (31%), Positives = 191/387 (49%), Gaps = 38/387 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-------SCCAGQDVY 74 +V++ +SGGVDSSV A +L + GYDV V ++ ++S +G +C +D Sbjct: 4 KVLIGLSGGVDSSVAALILLQQGYDVEAVFMRNWDSATNMDFRGNPTLYDETCEQEKDYQ 63 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA +V + + + + D+ + + V F Y TP P V CN +KF + + Sbjct: 64 DALKVANKLGIKLHRVDFIHEYWDRVFSYFIDEYEKNRTPNPDVLCNNEIKFKAFIDYSE 123 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 + D +A GHY + + GD+ K + R +D +DQ+YFL +QL ++ FP+G+ Sbjct: 124 KFKPDYIAMGHYAQID-HTGDEPK----LIRAVDSNKDQTYFLSQLKTEQLRNVLFPIGN 178 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 + K VR +A+E L ADK DS ICF+ + + + + +N A EGD+ L+G + Sbjct: 179 LPKSEVRRIAKEHDLATADKKDSTGICFIGERHFNEFL--LNYLPAKEGDMRRLDGTFIK 236 Query: 255 RHNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 RH G++NYTIGQR+GLG+ + FVV D +++ + V P L + E Sbjct: 237 RHFGLMNYTIGQRKGLGIGGTTDTTDAWFVVGKDLSTNTLYVEPGFEHPYLYSDEALITE 296 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACV 366 + W G A DG K K R Q+ V ++ DD + F ++ V GQ C Sbjct: 297 VKWRG------AKRDG-KFTAKFRYRQEDQDVEIKWIDDETFKVFYPQKIRAVTPGQVCA 349 Query: 367 FYTSDSNEARVLGGGIIS-----GSKR 388 Y + +G G IS G KR Sbjct: 350 IYEDEV----CVGSGFISVVYNEGEKR 372 >gi|332181403|gb|AEE17091.1| tRNA-specific 2-thiouridylase mnmA [Treponema brennaborense DSM 12168] Length = 452 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 143/458 (31%), Positives = 203/458 (44%), Gaps = 99/458 (21%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-----SRKASKRKGSC 67 DL V V MSGGVDS++VA LLK G +VIGVT+ +N A + SC Sbjct: 5 DLPLPEPGTTVAVGMSGGVDSTLVAILLKERGCNVIGVTMSSWNDDMPLPHSADGVRSSC 64 Query: 68 CAGQ---DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 D+ C ++ ++V D E +R V+ F + Y AG TP PC+ CN V Sbjct: 65 YGPDEQVDIAQCESFCKEHDIEYHVIDVRETYRKEVLDYFKAEYRAGRTPNPCIRCNPRV 124 Query: 125 KFSDLLSVTRQLGA--DVLATGHY---IRSRLYVGD------------------------ 155 KF LL LG D TGHY +R V D Sbjct: 125 KFGALLEGITALGIRFDYFCTGHYARLVRPETSVADLYREHVVPGFAAAPGFDAVPAEFR 184 Query: 156 ----------------DGKRRRIMCRPM------DLERDQSYFLFATTQQQLCDLRFPLG 193 D + RP+ D +DQ+YFL L +RFPL Sbjct: 185 SAEAGVEPPSTVSAVPDTSALPVSERPVMIAYASDSTKDQTYFLCRVPSHVLEKVRFPLA 244 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 K+ V +A+E L A +S+SQD FV + YFDV+ + ++ GDIV+L+G+++ Sbjct: 245 GFTKKEVFAMAQERRLAAASRSESQD--FVPEA-YFDVI--FSDKPSVPGDIVNLDGKVI 299 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 GRH GI +YT+GQRRGLGV+ PL+V +D +RV++ + L + + W G+ Sbjct: 300 GRHRGIEHYTVGQRRGLGVSSTRPLYVHSIDAVHNRVVLAENDDLLCGALLADDWVWAGN 359 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--------------------------RNDDG 347 + A+ F VKIR + PV V+ R G Sbjct: 360 --YVPAL--PFTGEVKIRLASKPVEAVVEPYAGVHTTACAAGTGDSDAARDSDAAREPSG 415 Query: 348 VY-VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 V+ + F+ + VA GQ+ V Y + ++GGGIIS Sbjct: 416 VFKITFKNPQRAVAPGQSAVVYLN----GVIVGGGIIS 449 >gi|332043246|gb|EGI79443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lacinutrix algicola 5H-3-7-4] Length = 396 Score = 174 bits (441), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 118/400 (29%), Positives = 193/400 (48%), Gaps = 44/400 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V +SGGVDSSV A LLK GY+VIG+ ++ ++ + C D DA V + Sbjct: 4 RVIVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVT-ISDECPWLDDSNDAMLVAE 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + D E+++ ++ + Y G TP P V CNR +KF + + LGAD + Sbjct: 63 KLGIPFQTVDLSEQYKERIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMKIALDLGADYV 122 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + + DG+ + D +DQSYFL +Q+QL FP+G+++K VR Sbjct: 123 ATGHYCRKGI-IEKDGEEVYQLLSGKDNNKDQSYFLCQLSQEQLAKALFPIGELQKPEVR 181 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVK---RINAGIALE---------------- 242 ++A + L ADK DSQ +CF+ + + D ++ + G+ +E Sbjct: 182 EIAAKADLITADKKDSQGLCFIGKVRLPDFLQQQLKPKEGVIVEIPKDNANYSNTQESFN 241 Query: 243 ------------GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSR 289 + +G+I+G+H G +T GQR+GL V EPLFV+ D + Sbjct: 242 SKTEELKYLSRKAEYAVADGEIVGKHQGAHYFTKGQRKGLSVGGKVEPLFVIDTDVEENV 301 Query: 290 VIVGP---RESLEVHRIYLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN 344 + G L +++ E++W+ L + + +IR Q + + Sbjct: 302 IYTGQGKGHPGLYKKALFVSNDELHWVRPDLALKP-DETLQVLARIRYRQTLENATLHKV 360 Query: 345 DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + G+YV+FE + + GQ +Y D ++G G+IS Sbjct: 361 ESGLYVEFENLQSAITEGQFVAWYLED----ELVGSGVIS 396 >gi|300741847|ref|ZP_07071868.1| tRNA methyl transferase [Rothia dentocariosa M567] gi|300381032|gb|EFJ77594.1| tRNA methyl transferase [Rothia dentocariosa M567] Length = 377 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 123/370 (33%), Positives = 172/370 (46%), Gaps = 44/370 (11%) Query: 47 VIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPF 104 ++GV L L + + R GS CC +D DARRVC + + +V+D+ ERF+ V+ F Sbjct: 1 MVGVHLAL-SRMPGTLRTGSRGCCTLEDSMDARRVCAQLGIPFFVWDFSERFKEDVVDDF 59 Query: 105 ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMC 164 + Y AG TP PC+ CN +KF+ LL LG D + TGHY +R+ DDG R + Sbjct: 60 IAEYEAGRTPNPCMRCNEKIKFAALLERAVSLGFDAVVTGHY--ARVITNDDGNRE--LH 115 Query: 165 RPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFV 223 R D +DQSY L T +QL FPL K VR A G +A K DS DICF+ Sbjct: 116 RAADWAKDQSYVLGVLTHEQLKHAWFPLATTPSKAEVRAEAERRGFSVAKKPDSYDICFI 175 Query: 224 QQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM----GEPL 278 +G D + I + G I +G ++G H G +T+GQR+GL + G+P Sbjct: 176 PEG---DTRAWLGEHIQMRPGMIKDTSGNVVGEHPGAQGFTVGQRKGLALGTPAPDGKPR 232 Query: 279 FVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV-----------DGFKCF 327 FV+ + ++ VIVG RE L + I W G + E + F Sbjct: 233 FVLEIRPKTNEVIVGSRELLSIDEIRGIRATWAGIPVPEAEHFLAQEPKLGVRSETFDVT 292 Query: 328 VKIRSSQDPV--PVFVQRNDDG-----------VYVDFEKSEVGVASGQACVFYTSDSNE 374 ++R+ DPV ++ +D V GVA GQ V Y Sbjct: 293 AQVRAHADPVRGTAHLEWAEDTDAETPGKLRVETVVRLHDGLFGVAPGQTMVLYQG---- 348 Query: 375 ARVLGGGIIS 384 RVLG I+ Sbjct: 349 TRVLGQSTIA 358 >gi|313887530|ref|ZP_07821213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846408|gb|EFR33786.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 353 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 122/373 (32%), Positives = 178/373 (47%), Gaps = 37/373 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++ MSGGVDSSV A LLK GYDV V + R ++ G C A +D D VC Sbjct: 6 KVILGMSGGVDSSVSAILLKEAGYDVTAVFM-----RNWAEDDGMCTAREDYIDVVSVCS 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + ++ ++E+ +R+ V F S Y G TP P V CN +KF L AD + Sbjct: 61 QLGIKYFTVNFEKEYRDRVFSYFLSEYKKGRTPNPDVMCNTEIKFKAFLDYAMDFDADYI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 A GHY R++ G + + + +D +DQSYFL + L FP+GD+ K+ VR Sbjct: 121 AMGHYARTKKVHG-----KTYLLKGLDNNKDQSYFLSRVKSEALEKTLFPVGDLTKDEVR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + L A K DS ICF+ + + + + + G IV G++LG H+G+++ Sbjct: 176 RIAEKYELSTASKKDSTGICFIGERDFNEFLDQF--LFTKPGKIVDEKGKVLGEHSGLMH 233 Query: 262 YT---IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYLREINW 310 YT GV GEP FV D ++ +IV ++ EV I+ W Sbjct: 234 YTIGQRRGIGIGGVGSGEPFFVADKDLKNNLLIVAQGINNPVLYKDEFEVEDIF-----W 288 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 + + VD VKIR +++ +D V +K GV GQ CVFY Sbjct: 289 ITEN--PSLPVD---LSVKIRYRASDQAATLEKQNDKYVVKLKKPLKGVTPGQVCVFYQG 343 Query: 371 DSNEARVLGGGII 383 D LG GII Sbjct: 344 DV----CLGSGII 352 >gi|257452732|ref|ZP_05618031.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Fusobacterium sp. 3_1_5R] gi|257466593|ref|ZP_05630904.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|315917748|ref|ZP_07913988.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|317059273|ref|ZP_07923758.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 3_1_5R] gi|313684949|gb|EFS21784.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 3_1_5R] gi|313691623|gb|EFS28458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium gonidiaformans ATCC 25563] Length = 345 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 107/365 (29%), Positives = 190/365 (52%), Gaps = 25/365 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++ MSGGVDS+V A LL+++GYDVI V ++ + + ++V D++ + + Sbjct: 4 KVILGMSGGVDSAVAAYLLQKNGYDVIAVHFSVHKTERTQ---------EEVKDSQTIAN 54 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 ++ Y + E+ F+ +I + + G TP PC C+ +VKF L + GA + Sbjct: 55 QFSIPLYSYCLEKEFQEKIISYYLTEIEKGRTPSPCPLCDDSVKFHLLFQEAEKHGAKYV 114 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY ++ + ++ + +DQ Y L+ + ++L + FPL ++K VR Sbjct: 115 ATGHYASIS---SNNVFKTSLLEANHHIHKDQCYMLYRLSSEKLKRILFPLSSLEKSEVR 171 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++AR++GL +++K DSQ ICF +G Y +K+ A +G+ + G ILG+H+G Sbjct: 172 EIARKIGLFVSEKKDSQGICFAPEG-YQAFLKKHLAHKIQKGNFIDEKGNILGKHSGYPL 230 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV- 320 YT+GQRRGLG+ M E F+ ++ +++ + +G ++L L + L + +F + Sbjct: 231 YTLGQRRGLGIQMKEISFITKINPDTNEITLGKFDNL------LEDKVILENTIFHLPLE 284 Query: 321 -VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + + R S V+ + V + + ASGQ V + E V+G Sbjct: 285 TLKNMTLLARPRFSSTGFLGKVREENGVVTFHYFEKNAHNASGQHLVLFY----ENYVVG 340 Query: 380 GGIIS 384 GGII+ Sbjct: 341 GGIIA 345 >gi|293400445|ref|ZP_06644590.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305471|gb|EFE46715.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 391 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 126/380 (33%), Positives = 196/380 (51%), Gaps = 35/380 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 +V++ +SGGVDS+V A +LK GYDV ++ ++S + G+ C QD Sbjct: 8 KVLLGLSGGVDSAVAAYILKEQGYDVTCAFMRNWDSFANNDIMGNPTIQDDVCPQEQDYL 67 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ V D + + D+ + + + V F Y G TP P + CN+ +KF + R Sbjct: 68 DAKAVADKLGLPLLRVDFVKEYWDNVFTYFLDEYRKGRTPNPDILCNKYIKFDAFMKYAR 127 Query: 135 QLGADVLATGHYIR---SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 +LG D+LATGHY + + LY M R D +DQ+YFL +Q L FP Sbjct: 128 KLGFDILATGHYAQVEHTPLY--------SRMLRGADSNKDQTYFLCQVSQDALAHALFP 179 Query: 192 LGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250 +G++ K VR++A+++ L+ +A K DS ICF+ + + + ++ N + +GDIV ++ Sbjct: 180 IGNLNKAEVREIAQKLELESVATKKDSTGICFIGERNFKEFLQ--NYLPSQDGDIVDIHS 237 Query: 251 -QILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLD--KNSSRVIVG-PRESLEVHRIYL 305 +++GRH G++ YTIGQR+GLG+ + P FVV D KN V G ++ L + Sbjct: 238 LEVIGRHIGVLYYTIGQRKGLGIGGNKGPWFVVGKDVHKNILYVTNGNEKDWLYSTSCIV 297 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQA 364 +NWL E+ + C K R Q + +Q D+ V V + + V GQ Sbjct: 298 SGVNWLRPHKPENE----YACTAKFRYRQQDHEISLQFIDETTVLVCYPQGVASVTCGQE 353 Query: 365 CVFYTSDSNEARVLGGGIIS 384 VFY D E LGGG+I Sbjct: 354 AVFY--DGQEC--LGGGVIE 369 >gi|205822290|sp|Q122U9|MNMA_POLSJ RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 401 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 127/398 (31%), Positives = 187/398 (46%), Gaps = 42/398 (10%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 +DK R+VV +SGGVDS+V A LLK+ G++VIG+ ++ + S+ C + D Sbjct: 1 MDKQHSKQRIVVGLSGGVDSAVTAYLLKQQGHEVIGIFMKNWEDDDDSE---YCSSNIDF 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA V D I + ++ +++ V F Y AG TP P + CN +KF L Sbjct: 58 VDAAAVADVIGIEIEHVNFAADYKDRVFAEFLREYQAGRTPNPDILCNAEIKFKAFLDHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +LGA+ +ATGHY R R ++ + + +D +DQSYFL Q QL FP+G Sbjct: 118 MRLGAEKIATGHYARVRR---NESTGLHELLKGLDPAKDQSYFLHRLNQAQLSKTLFPVG 174 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++ K VR +A E+GL A K DS ICF+ + + D + R A G I + G++L Sbjct: 175 ELHKTEVRRIADEIGLPNAKKKDSTGICFIGERPFRDFLNRYIA--KAPGPIKNDRGRVL 232 Query: 254 GRHNGIINYTIGQRRGL---------------------GVAMGEPLFVVY--LDKNSSRV 290 G+H G+ YT+GQR+GL GV EP FV LD N+ V Sbjct: 233 GKHVGLSFYTLGQRQGLGIGGVKARGAELKAAQARGQRGVGEHEPWFVARKDLDTNTLWV 292 Query: 291 IVGP-RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGV 348 + G L+ + ++ +W+ A G K R Q D Sbjct: 293 VQGHDHPWLQSTVLSAQDCSWVAG----TAPAAGLMA-AKTRYRQVDATCELRSATTANC 347 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 + F + + V GQ+ V Y D LGGG+I+ S Sbjct: 348 ELVFAEPQWAVTPGQSAVLYQGDV----CLGGGVIAAS 381 >gi|167571198|ref|ZP_02364072.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia oklahomensis C6786] Length = 400 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 127/407 (31%), Positives = 181/407 (44%), Gaps = 58/407 (14%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D I + Sbjct: 1 MSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVADLIGID 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 ++ +++ V F Y+AG TP P V CN +KF L LGA +ATGHY Sbjct: 58 VEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGARTIATGHY 117 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 R R G R + + D +DQSYFL Q QL FPLG++ K VR++A + Sbjct: 118 ARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKTKVREIAEQ 172 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 +GL A K DS ICF+ + + D + R G + +G+ +G H G+ YT GQ Sbjct: 173 IGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAFYTFGQ 230 Query: 267 RRGLGV-----AMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGDGLFED 318 R+G+G+ GEP FV D N+ V+ G + R + ++W+ + Sbjct: 231 RKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRELVAGNVSWVAG----E 286 Query: 319 AVVDGFKCFVKIRSSQ------------------------------DPVPVFVQRNDDGV 348 DG +C K R Q P V + + Sbjct: 287 PPADGVRCGAKTRYRQADAACAFGRATSGRAAPGRAASGQHASDGGAPSGVAADASGERF 346 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII--SGSKRSDAVE 393 + F++ + V GQ+ V Y D LGGGII + + R DA Sbjct: 347 SLTFDEPQWAVTPGQSAVLYDGDV----CLGGGIIESAATGRPDAAH 389 >gi|82703361|ref|YP_412927.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosospira multiformis ATCC 25196] gi|123544047|sp|Q2Y6T6|MNMA_NITMU RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|82411426|gb|ABB75535.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosospira multiformis ATCC 25196] Length = 363 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 127/375 (33%), Positives = 187/375 (49%), Gaps = 27/375 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ + + C + QD+ DA V D Sbjct: 5 RVVVGMSGGVDSSVAALLLKQQGYEVIGLFMKNWEDDDTDEY---CSSRQDLIDAASVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ ++ V F + Y AG TP P V CN +KF L LGAD + Sbjct: 62 VIGIPLEAVNFSAEYKERVFSHFLAEYKAGRTPNPDVLCNAEIKFKAFLDHAAGLGADYI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + R DG + + + D +DQSYFL+ Q QL FP+G + K VR Sbjct: 122 ATGHYAQVR---NTDGVFQ--LLKGEDGTKDQSYFLYRLNQAQLSRALFPIGHLYKRDVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A++ GL K DS ICF+ + + + + R G+I +G ++GRH G++ Sbjct: 177 SIAKDHGLPNFSKKDSTGICFIGERPFREFLNRYLPNDP--GEIRTPSGDVMGRHAGLMY 234 Query: 262 YTIGQRR-----GLGVAMGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLGD 313 YTIGQR+ G GEP FV D K + +V + ++ R L ++ W+ Sbjct: 235 YTIGQRQGLGIGGTRGGDGEPWFVSEKDVKRNVLTVVQGHDHPDLLRPALAATDLTWVSG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDS 372 + V KIR Q P + D + ++F + + VA GQ+ V Y S Sbjct: 295 KMPRCNWVYA----AKIRYRQSDAPCSITYLDCNKCKIEFAQPQWAVAPGQSVVVYESKV 350 Query: 373 NEARVLGGGIISGSK 387 LGGG+I+ ++ Sbjct: 351 ----CLGGGVIAATQ 361 >gi|309363500|emb|CAP26308.2| hypothetical protein CBG_06062 [Caenorhabditis briggsae AF16] Length = 393 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 122/392 (31%), Positives = 201/392 (51%), Gaps = 40/392 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--------------SC 67 RVV+ MSGGVDS+V A LLK+ G+DV+G+ + ++ ++ S++K +C Sbjct: 5 RVVIGMSGGVDSAVSAFLLKQKGFDVVGLHMVTHSRQRESEKKNISQINWDSQEEGSSTC 64 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 +D DAR VC+ +N+ + ++ + + N V + F +Y G T +P +DCN ++KF Sbjct: 65 PRSKDEADARNVCNRLNIPFHTVNFVKEYWNHVFLKFLENYKIGRTTVPDIDCNYSIKFD 124 Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRI-----MCRPMDLERDQSYFLFATT 181 V ++ AD +ATGHY + GD + R+ + D +DQ++FL T Sbjct: 125 AFHKVAQETFDADFIATGHYATTSF--GDFQQNRKHSEAIRLFSGRDPLKDQTFFLCTVT 182 Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIA 240 Q+QL FPLG ++K V+ +A + G + K +S ICF+ + K F ++ I Sbjct: 183 QEQLKRAMFPLGSLQKSEVKRIAEQQGFHRVVKKPESMGICFIGKKKRFSDF--LDEYIE 240 Query: 241 LE-GDIVHLNGQILGRHNGIINYTIGQR---RGLGVAMGEPLFVVYLDKNSSRVIV--GP 294 + G IV +G+ +G+H+GI +TIG+R + L FV + ++ V+ G Sbjct: 241 PKPGRIVLKDGKQIGKHHGIHQFTIGKRIHGKYLNERSHFGFFVSEIRSDTGDVVACNGS 300 Query: 295 RES-LEVHRIYLREINWL--GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD 351 S L R + NW+ D L E + K +I+ + PVP V++++ + V+ Sbjct: 301 HHSDLYATRFLINRPNWIPSSDPLEE---ISPSKILCRIQRTHPPVPCKVEKSEHYLSVE 357 Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 + + GQ CVFYT+ E LGGG I Sbjct: 358 PKIPLRATSPGQMCVFYTT---ENECLGGGEI 386 >gi|242042037|ref|XP_002468413.1| hypothetical protein SORBIDRAFT_01g045520 [Sorghum bicolor] gi|241922267|gb|EER95411.1| hypothetical protein SORBIDRAFT_01g045520 [Sorghum bicolor] Length = 489 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 129/377 (34%), Positives = 183/377 (48%), Gaps = 30/377 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RV V +SGGVDSSV LL G+ L+++ C +D+ A+ VC Sbjct: 78 LRVAVLVSGGVDSSVALRLLHAAGHHCTAFYLKIWFQEDFRNFWSECPWDEDLKYAQAVC 137 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I+V V + + N V+ + Y G TP P V CN +KF L LG D Sbjct: 138 DKIDVPLEVVHLSDEYWNYVVSHMINEYRCGRTPNPDVLCNTRIKFGAFLEAIENLGFDY 197 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A+GHY ++ + I+ D +DQ+YFL +Q QL L FPLG + K+ V Sbjct: 198 IASGHYAHVVHPSTENTEAPSILQLSKDKVKDQTYFLSHLSQPQLRRLLFPLGCITKDEV 257 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHN 257 R LA +MGL + DSQ ICF+ + K+ + V+R GI LE + +G LG+H Sbjct: 258 RRLATQMGLPNQGRKDSQGICFLGKVKFSEFVERHIGEMEGIILEAE----SGDYLGKHR 313 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLR--EINWL--- 311 G YTIGQR+GL + G P +VV D ++ V V SL+ R R +NW Sbjct: 314 GFWFYTIGQRQGLRLP-GGPWYVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFDSS 372 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQD-----PVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 G G E KC K+R S + + + N+D + V + + G+A+GQ Sbjct: 373 GPGNNEQ-----LKC--KVRHSPEFHDCTLIKEHTEENEDALVVHLSEDDQGLAAGQFAA 425 Query: 367 FYTSDSNEARVLGGGII 383 FY+ S LG GII Sbjct: 426 FYSEHS----CLGSGII 438 >gi|198274021|ref|ZP_03206553.1| hypothetical protein BACPLE_00158 [Bacteroides plebeius DSM 17135] gi|198273099|gb|EDY97368.1| hypothetical protein BACPLE_00158 [Bacteroides plebeius DSM 17135] Length = 375 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 120/378 (31%), Positives = 190/378 (50%), Gaps = 29/378 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV+V MSGG+DSS +L+ GY+V+GVT++ ++ AS +V +A+ Sbjct: 4 REKRVLVGMSGGIDSSAACIMLQEQGYEVVGVTMRTWDV--ASHFTPGNDQPNEVIEAQE 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + H+V D FR ++ F Y G TP PCV CN K L + Sbjct: 62 LAARLGIEHHVADVRTEFRQVIVQYFIDEYMRGRTPNPCVMCNPLFKERILCEWADKCNC 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY + + D R + D +DQSYFL+ Q+ L + FPLG M K Sbjct: 122 AWIATGHYCQLK-----DLNGYRYILTGDDPLKDQSYFLWKLPQEILKRMMFPLGGMTKA 176 Query: 199 SVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKR----INAGIALEGDIVHLNGQIL 253 SVRD G + A +S +ICF+++ Y + +K I+ I G V G L Sbjct: 177 SVRDYLASKGFEAKARGGESMEICFIEK-DYREFLKEHCPDIDERIG-PGWFVDNKGLKL 234 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+H G YTIGQR+GL +A+G+P +V+ ++ + V++G + L+ + + + + N Sbjct: 235 GQHKGFAYYTIGQRKGLEIALGKPAYVLKINPAKNTVMLGDADQLKTYYMLVEDYN---- 290 Query: 314 GLFEDAVVDGFKC---FVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 ++ + C V+IR +P V D+G + V FE+ + GQ+ VFY Sbjct: 291 ---VASLAELLNCKELSVRIRYRSRSIPCRVILLDNGQLLVRFEQEASAITPGQSAVFYE 347 Query: 370 SDSNEARVLGGGIISGSK 387 + RVLGGG I+ + Sbjct: 348 GN----RVLGGGFIASQQ 361 >gi|313147999|ref|ZP_07810192.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides fragilis 3_1_12] gi|313136766|gb|EFR54126.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides fragilis 3_1_12] Length = 364 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 117/380 (30%), Positives = 187/380 (49%), Gaps = 38/380 (10%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV++ MSGG DSSV A LL GY+V GVT + Y +++ + DAR Sbjct: 4 ENKRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNDSTEY---------LEDARA 54 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + H +D E FR ++ F Y AG TP+PC CN +K+ L + ++G Sbjct: 55 LATRLGIEHITYDAREIFRKKIVDYFIDEYMAGHTPVPCTLCNNWLKWPLLAKIADEMGI 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 LATGHY+R + G + D ++DQS+FL+ Q L + P+G+M K Sbjct: 115 FYLATGHYVRKKWMDGS-----YYITLAADPDKDQSFFLWGLKQDILQRMLLPMGEMTKP 169 Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKR--INAG------IALE---GDIV 246 R A G + ++ K DS +CF Y +K+ +AG I E G + Sbjct: 170 EARAYAAGRGFEKVSKKKDSIGVCFCPL-DYRSFLKKHLCDAGGDRSNKIIREVGKGRFL 228 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 +G + H G YTIGQRRGLG+ + +FV + ++ VI+ P +SLE ++L+ Sbjct: 229 DESGNFIAWHEGYPFYTIGQRRGLGIQLNRAVFVKEIHPETNEVILAPLKSLEKSEMWLK 288 Query: 307 EINWLGDGLFEDAVVDGF-KCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364 + N + ++ + G+ V+IR + V +G +++ + +A GQA Sbjct: 289 DWN-----IINESRLLGYDDIIVRIRYRKQENHCSVTITPEGLLHIQLHEPLSAIAEGQA 343 Query: 365 CVFYTSDSNEARVLGGGIIS 384 FY + +LGGGII+ Sbjct: 344 AAFY----KDGLLLGGGIIT 359 >gi|317477931|ref|ZP_07937114.1| tRNA methyl transferase [Bacteroides sp. 4_1_36] gi|316905845|gb|EFV27616.1| tRNA methyl transferase [Bacteroides sp. 4_1_36] Length = 363 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 127/370 (34%), Positives = 181/370 (48%), Gaps = 30/370 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D RV++ MSGG DSSV A L+ GY+V GVT + Y +A G + DAR + Sbjct: 17 DKRVLLGMSGGTDSSVAAMRLQEAGYEVTGVTFRFY---EAGDETGY------LEDARAL 67 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + H +D E FR+ +I F Y G TP+PC CN +K++ L + + G Sbjct: 68 ALKLGMKHITYDARELFRSRIIRYFVEEYLRGRTPVPCTVCNNELKWALLAKIADEKGIY 127 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++TGHY+R L G + + D ++DQ++FL+ Q L + P+GD+ K Sbjct: 128 WISTGHYVRKVLSGG-----KYYIAPAADKDKDQTFFLWGLKQDILQRMLLPMGDITKNE 182 Query: 200 VRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDIVHLNGQILGRH 256 R A E G +A K DS +CF Y +KR L +G V G LG H Sbjct: 183 ARSYAAERGFGQVAAKKDSIGVCFCPL-DYRSFLKREVPETLLPGKGRFVDEKGDFLGWH 241 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD-GL 315 G YT+GQRRGLG+ + + +FV S+ V++ P SL R+ WLGD L Sbjct: 242 EGYPFYTVGQRRGLGIHLNKAVFVKETRVESNEVVLAPLSSL------YRQEMWLGDWNL 295 Query: 316 FEDAVVDGF-KCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSN 373 E++ V G + VKIR + V +G+ V + +A GQA FY D Sbjct: 296 VENSRVLGANEVIVKIRYRKQANRCRVTLTVEGLLRVRLIEPLESIAPGQAAAFYDKDGY 355 Query: 374 EARVLGGGII 383 +LGGGII Sbjct: 356 ---LLGGGII 362 >gi|14195277|sp|Q9JTJ9|MNMA_NEIMA RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 367 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 126/383 (32%), Positives = 187/383 (48%), Gaps = 26/383 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++ NP + ++V +SGGVDSSV AALLK+ GY V GV +Q + + C Q Sbjct: 1 MNTTANPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDEY---CSIKQ 55 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 56 DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 115 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 116 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERAIFP 170 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 171 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 228 Query: 252 ILGRHNGIINYTIGQRR-GLGVAMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308 +G H G++ YT+GQR+ GEP FV L KN V+ G L +Y R + Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGGGEPWFVAAKDLTKNELMVVQGHDHPL----LYTRSL 284 Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 N L L E + C + R + P + +D+ V + F++ + V GQ+ V Sbjct: 285 VMNDLSFTLPERPKEGHYTCKTRYRMADAPCEL-RYLDDETVELVFDEPQWAVTPGQSAV 343 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 Y D LGGGII + + Sbjct: 344 LYDGDI----CLGGGIIQSTDKP 362 >gi|300774572|ref|ZP_07084435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chryseobacterium gleum ATCC 35910] gi|300506387|gb|EFK37522.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chryseobacterium gleum ATCC 35910] Length = 395 Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 114/407 (28%), Positives = 199/407 (48%), Gaps = 55/407 (13%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++VV +SGGVDSSV A LL++ G++V+ + ++ +N + + C +D DA V Sbjct: 1 MKIVVGLSGGVDSSVTAYLLQQQGHEVVALFMRNWNDASVT-LEDECPWIEDSNDALMVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + V D E ++ ++ + Y G TP P V CNR VKF + LGAD Sbjct: 60 QKLGIPFQVIDMSELYKERIVDYMFAEYEKGRTPNPDVLCNREVKFDVFMKTAMSLGADK 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R ++GK + D +DQSYFL +Q QL FP+G++ K V Sbjct: 120 VATGHYARVTSTFDENGKEIFHLLAGKDNNKDQSYFLCQLSQDQLSKALFPIGELTKPQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQ---GKYFDVVKRINAGIALEGDIVHL--------- 248 R++A+E+GL ADK DSQ +CF+ + ++ + N EG+IV + Sbjct: 180 REIAKEIGLVTADKKDSQGLCFIGKVSLPQFLQQQLKPN-----EGEIVEIFKDSPLFSE 234 Query: 249 ------------------------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYL 283 +G+++G+H G +TIGQ +GLG+ E F++ Sbjct: 235 EKPEFSSKEEELEYLSRKINYKKSDGKVIGKHQGAQFFTIGQSKGLGIGGHKESCFIISR 294 Query: 284 DKNSSRVIVGPRESLE-VHRIYLR----EINWLGDGL-FEDAVVDGFKCFVKIRSSQDPV 337 D ++ + VG +H+ L+ E++W+ + + ++ + + + R Q Sbjct: 295 DMENNILFVGEGSHFPGLHKKALKIDNSELHWVREDMKLQNG--ESMEVMARFRYRQPLQ 352 Query: 338 PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + + ++ Y++F++ + +A GQ +Y + ++G G+IS Sbjct: 353 KATLYQFENAFYIEFDELQSAIAEGQFASWYIDE----ELIGSGVIS 395 >gi|160888582|ref|ZP_02069585.1| hypothetical protein BACUNI_00999 [Bacteroides uniformis ATCC 8492] gi|156861896|gb|EDO55327.1| hypothetical protein BACUNI_00999 [Bacteroides uniformis ATCC 8492] Length = 350 Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 125/369 (33%), Positives = 180/369 (48%), Gaps = 28/369 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D RV++ MSGG DSSV A L+ GY+V GVT + Y +A G + DAR + Sbjct: 4 DKRVLLGMSGGTDSSVAAMRLQEAGYEVTGVTFRFY---EAGDETGY------LEDARAL 54 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + H +D E FR+ +I F Y G TP+PC CN +K++ L + + G Sbjct: 55 ALKLGMKHITYDARELFRSRIIRYFVEEYLRGRTPVPCTVCNNELKWALLAKIADEKGIY 114 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++TGHY+R L G + + D ++DQ++FL+ Q L + P+GD+ K Sbjct: 115 WISTGHYVRKVLSGG-----KYYIAPAADKDKDQTFFLWGLKQDILQRMLLPMGDITKNE 169 Query: 200 VRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDIVHLNGQILGRH 256 R A E G +A K DS +CF Y +KR L +G V G LG H Sbjct: 170 ARSYAAERGFGQVAAKKDSIGVCFCPL-DYRSFLKREVPETLLPGKGRFVDEKGDFLGWH 228 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G YT+GQRRGLG+ + + +FV S+ V++ P SL ++L E N L Sbjct: 229 EGYPFYTVGQRRGLGIHLNKAVFVKETRVESNEVVLAPLSSLYKQEMWLGEWN-----LV 283 Query: 317 EDAVVDGF-KCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNE 374 E++ V G + VKIR + V +G+ V + +A GQA FY D Sbjct: 284 ENSRVLGANEVIVKIRYRKQANRCRVTLTVEGLLRVRLIEPLESIAPGQAAAFYDKDGY- 342 Query: 375 ARVLGGGII 383 +LGGGII Sbjct: 343 --LLGGGII 349 >gi|218768524|ref|YP_002343036.1| tRNA-specific 2-thiouridylase MnmA [Neisseria meningitidis Z2491] gi|11277501|pir||H81798 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) NMA1744 [imported] - Neisseria meningitidis (strain Z2491 serogroup A) gi|121052532|emb|CAM08872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis Z2491] Length = 383 Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 126/382 (32%), Positives = 187/382 (48%), Gaps = 26/382 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++ NP + ++V +SGGVDSSV AALLK+ GY V GV +Q + + C Q Sbjct: 17 MNTTANPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 71 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 72 DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 131 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 132 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERAIFP 186 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 187 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 244 Query: 252 ILGRHNGIINYTIGQRR-GLGVAMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308 +G H G++ YT+GQR+ GEP FV L KN V+ G L +Y R + Sbjct: 245 TVGEHVGLMFYTLGQRKGLGIGGGGEPWFVAAKDLTKNELMVVQGHDHPL----LYTRSL 300 Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 N L L E + C + R + P + +D+ V + F++ + V GQ+ V Sbjct: 301 VMNDLSFTLPERPKEGHYTCKTRYRMADAPCEL-RYLDDETVELVFDEPQWAVTPGQSAV 359 Query: 367 FYTSDSNEARVLGGGIISGSKR 388 Y D LGGGII + + Sbjct: 360 LYDGDI----CLGGGIIQSTDK 377 >gi|303232364|ref|ZP_07319057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Atopobium vaginae PB189-T1-4] gi|302481548|gb|EFL44615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Atopobium vaginae PB189-T1-4] Length = 392 Score = 172 bits (437), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 128/393 (32%), Positives = 189/393 (48%), Gaps = 40/393 (10%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 PK V + MSGGVDS+ AALLK GY V V ++ ++ +C D+ DA Sbjct: 10 PKGATVYLGMSGGVDSACSAALLKEWGYTVHAVYMRNWSRDLPGF---TCRWADDLADAE 66 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RVC T+ ++ V+D E+ +++ V+ +YA G TP P V CN+T+KF G Sbjct: 67 RVCVTLGLTLDVWDCEQEYKSTVVDYLIDAYARGYTPNPDVMCNQTIKFGTFAEKAFAHG 126 Query: 138 ADVLATGHYIR----------------SRLYVGDDGKRRRI-----MCRPMDLERDQSYF 176 AD +ATGHY + + D G + R D +DQ+YF Sbjct: 127 ADFIATGHYAQVDAGALAGATADVADANVASSADSGNADATFPVSPLIRAADEHKDQTYF 186 Query: 177 LFATTQQQLCDLRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI 235 L+ ++ FP+G++ K+ VR+L RE GL + K DS ICFV G+ + Sbjct: 187 LWRVPAARIAKTIFPIGNIPSKKQVRELCREFGLGVEQKPDSDGICFV--GEVGIRTFLL 244 Query: 236 NAGIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP 294 + GDIV G +LG+H+G YTIGQRRGL + G +VV D + V V Sbjct: 245 DTLSQKAGDIVEWETGTVLGQHDGAFLYTIGQRRGLNLGGGPARYVVRTDTARNIVYVSS 304 Query: 295 R---ESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD 351 E L + L +WLG A G + V++R + VP V+ + ++ Sbjct: 305 NIACEELHCTSLALERTHWLG-----AAPTPGARYCVRLRHTGALVPCCVRYAGEQPTLE 359 Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ + +A GQ+ V Y + RV GGG I+ Sbjct: 360 FDEPIMRIAPGQSAVLY----DGRRVCGGGFIA 388 >gi|89890355|ref|ZP_01201865.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Flavobacteria bacterium BBFL7] gi|89517270|gb|EAS19927.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Flavobacteria bacterium BBFL7] Length = 392 Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 125/399 (31%), Positives = 196/399 (49%), Gaps = 45/399 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV A LLK G++VIG+ ++ ++ + C +D DA V D Sbjct: 3 KVVVGLSGGVDSSVAAYLLKEQGHEVIGLFMKNWHDDTVTISD-ECPWLEDSNDAMLVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + D E+++ ++ YA G TP P V CNR +KF + + +LGAD + Sbjct: 62 KLGIPFQTVDLSEQYKERIVDYMFDEYARGRTPNPDVLCNREIKFDVFMDIALELGADYV 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + + DGK + DL +DQSYFL +Q+QL FP+G ++K VR Sbjct: 122 ATGHYCQKTTTM-IDGKEIHHLIGGADLNKDQSYFLCQVSQEQLARTIFPIGHLQKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKR-----------INAGIALEGDIV---- 246 ++A L A K DSQ +CF+ + + D +++ I A ++++ +V Sbjct: 181 EIAASQDLITAGKKDSQGLCFIGKVRLPDFLQQQLKPKTGDIIEIPAQVSMDKAVVVNDE 240 Query: 247 ----------HLN---GQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV 292 H G+ LG H G +T GQR+GL V PLFV+ D S+ + V Sbjct: 241 DALVTLSRKRHYQAHEGKKLGTHQGAHYFTRGQRKGLAVGGTPLPLFVIETDVESNTIFV 300 Query: 293 GP-RESLEVHR----IYLREINWLGDGLFEDAVVDGFK--CFVKIRSSQDPVPVFVQRND 345 G ++ ++R I E++W+ + L A+ G K +IR Q + D Sbjct: 301 GQGKQHPGLYRRGLFIDKSELHWIREDL---ALKSGEKMDVMARIRYRQTLEKAVLHIVD 357 Query: 346 DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 G Y+ F+ + ++ GQ +Y + LG G+IS Sbjct: 358 QGAYLIFDTPQSAISPGQFAAWYQDN----ECLGSGVIS 392 >gi|107021774|ref|YP_620101.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia cenocepacia AU 1054] gi|116688721|ref|YP_834344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia cenocepacia HI2424] gi|123072405|sp|Q1BZ27|MNMA_BURCA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205811383|sp|A0K4M4|MNMA_BURCH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|105891963|gb|ABF75128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia cenocepacia AU 1054] gi|116646810|gb|ABK07451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia cenocepacia HI2424] Length = 391 Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 127/384 (33%), Positives = 179/384 (46%), Gaps = 37/384 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L L A+++ Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDAEMI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + D + R G + +G+++G H G+ Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVVGEHIGLAF 234 Query: 262 YTIGQRR-----GLGVAMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGD 313 YT GQR+ G GEP FV D N+ V+ G + R + ++W+ Sbjct: 235 YTFGQRKGIGLGGSKSGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRELVAGNVSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVY----------VDFEKSEVGVASG 362 + DGF C K R Q D VF + F+ ++ V G Sbjct: 295 ----EPPADGFACGAKTRYRQADAACVFGGAATGAAAAGPAGEVRFSLAFDDAQWAVTPG 350 Query: 363 QACVFYTSDSNEARVLGGGIISGS 386 Q+ V Y + LGGGII + Sbjct: 351 QSAVLYDGEI----CLGGGIIESA 370 >gi|206561667|ref|YP_002232432.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia cenocepacia J2315] gi|229486335|sp|B4EE50|MNMA_BURCJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|198037709|emb|CAR53652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia cenocepacia J2315] Length = 391 Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 127/384 (33%), Positives = 179/384 (46%), Gaps = 37/384 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D Sbjct: 5 RVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGEY---CSTRQDWIDVVSVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +++ V F Y+AG TP P V CN +KF L L A+++ Sbjct: 62 LIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDAEMI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K VR Sbjct: 122 ATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL A K DS ICF+ + + D + R G + +G+++G H G+ Sbjct: 177 EIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVVGEHIGLAF 234 Query: 262 YTIGQRR-----GLGVAMGEPLFVVYLD--KNSSRVIVGPRESLEVHR-IYLREINWLGD 313 YT GQR+ G GEP FV D N+ V+ G + R + ++W+ Sbjct: 235 YTFGQRKGIGLGGSKSGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRELVAGNVSWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVY----------VDFEKSEVGVASG 362 + DGF C K R Q D VF + F+ ++ V G Sbjct: 295 ----EPPADGFACGAKTRYRQADAACVFGLAATGAEAAGPAGEARFSLAFDDAQWAVTPG 350 Query: 363 QACVFYTSDSNEARVLGGGIISGS 386 Q+ V Y + LGGGII + Sbjct: 351 QSAVLYDGEI----CLGGGIIESA 370 >gi|119899062|ref|YP_934275.1| tRNA-specific 2-thiouridylase MnmA [Azoarcus sp. BH72] gi|205812510|sp|A1K983|MNMA_AZOSB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|119671475|emb|CAL95388.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Azoarcus sp. BH72] Length = 365 Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 125/381 (32%), Positives = 186/381 (48%), Gaps = 35/381 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+VVV MSGGVDSSV A LLK+ GY+V G+ ++ + + C QD+ D VC Sbjct: 1 MKVVVGMSGGVDSSVTALLLKQQGYEVTGLFMKNWEDDDDDE---YCSTRQDLVDVASVC 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + V ++ +++ V F Y AG TP P + CN +KF L QLGA+ Sbjct: 58 DVIGIDLEVVNFSAEYKDRVFADFLREYEAGRTPNPDILCNSEIKFRCFLDHAMQLGAER 117 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + R ++ +DG+ + + D +DQSYFL+ Q QL FPLG + K V Sbjct: 118 IATGHYAQVREWI-NDGRSEFQLLKAEDGTKDQSYFLYRLNQAQLAKTLFPLGGLYKREV 176 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259 R +A GL +A K DS ICF+ + + + + R G+I L + ++LG H G+ Sbjct: 177 RKIAEAAGLHVATKKDSTGICFIGERPFREFLMRYLP--TKPGEIRCLDDDRVLGEHQGL 234 Query: 260 INYTIGQRRGLGV----------AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLR 306 + +TIGQR+GL + E +V D N V+ G +L R+ Sbjct: 235 MYHTIGQRKGLHIGGIKGNQDEAGEHEAWYVAKKDVKANVLYVVQGHDHPALLKDRLLAT 294 Query: 307 EINWLGDGLFEDAVVDGFKCFV---KIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASG 362 ++NW+ A D +V K R +P + +G + F + + G Sbjct: 295 DLNWI-------AGRDPRTHWVYTAKPRYRTADMPCEIDALGEGRAEIAFATPQWALTPG 347 Query: 363 QACVFYTSDSNEARVLGGGII 383 Q+ V Y S LGGG+I Sbjct: 348 QSVVVYESKV----CLGGGVI 364 >gi|121607299|ref|YP_995106.1| tRNA-specific 2-thiouridylase MnmA [Verminephrobacter eiseniae EF01-2] gi|166991125|sp|A1WEN1|MNMA_VEREI RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|121551939|gb|ABM56088.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Verminephrobacter eiseniae EF01-2] Length = 370 Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 129/391 (32%), Positives = 186/391 (47%), Gaps = 40/391 (10%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + +PK RVVV +SGGVDS+V A LL++ G++V+G+ ++ + G C +G D Sbjct: 1 MTASPK-QRVVVGLSGGVDSAVTAYLLRQQGHEVVGIFMKNWED---DDDGGYCPSGTDF 56 Query: 74 YDARRVCDTINVS----HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 DA V D I + ++ DY+ER V F Y AG TP P V CN +KF Sbjct: 57 VDAAAVADVIGIEIEHVNFAADYKER----VFAEFLREYQAGRTPNPDVLCNAEIKFKAF 112 Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 L +LGA+ +ATGHY R + R + + D +DQSYFL Q+QL Sbjct: 113 LDHALRLGAEKIATGHYAGVRR---NPASGRFELLKGADPAKDQSYFLHRLDQRQLSRTL 169 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 FPLG ++K VR LA ++GL A K DS ICF+ + + + + R G I Sbjct: 170 FPLGALRKTEVRRLAEDIGLPNARKKDSTGICFIGERPFREFLNRYIG--PAPGPIEDDR 227 Query: 250 GQILGRHNGIINYTIGQRRGLGV------------AMGEPLFVVY--LDKNSSRVIVGPR 295 G++LG+H+G+ YT+GQR+GLG+ P FV L N+ RV+ G Sbjct: 228 GRVLGQHSGLSFYTLGQRQGLGIGGLKEQGAQRGGGAHAPWFVARKELATNTLRVVQGHD 287 Query: 296 ESLEVHR-IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEK 354 + R + ++ W+ A G QD G + F + Sbjct: 288 HPWLLSRALEAQDARWICGA----APAPGRYAAKTRYRQQDASCTMASAGQAGFRLHFSE 343 Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGIISG 385 + V GQ+ V Y D N LGGG+I+G Sbjct: 344 EQWAVTPGQSAVLY--DGNV--CLGGGVIAG 370 >gi|86132339|ref|ZP_01050934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dokdonia donghaensis MED134] gi|85817258|gb|EAQ38441.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dokdonia donghaensis MED134] Length = 397 Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 128/405 (31%), Positives = 196/405 (48%), Gaps = 54/405 (13%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV +SGGVDSSV A LLK GY+VIG+ ++ ++ + C D DA V + Sbjct: 4 VVVGLSGGVDSSVTAYLLKEQGYNVIGLFMKNWHDDSVTISD-ECPWLDDSNDAMLVAEK 62 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + D E+++ ++ Y G TP P V CNR +KF + + LGAD +A Sbjct: 63 LGIPFQTVDLSEQYQERIVDYMFREYEMGRTPNPDVLCNREIKFDVFMKIALSLGADYVA 122 Query: 143 TGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 TGHY +S + V DGK + D +DQSYFL +Q QL FP+G ++K VR Sbjct: 123 TGHYCQKSSIEV--DGKTVYQLIAGADNNKDQSYFLCQLSQDQLAKTLFPIGHLQKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVK---RINAGIALE---------------- 242 D+A + L A K DSQ +CF+ + + D ++ + G+ +E Sbjct: 181 DIALQQELVTAGKKDSQGLCFIGKVRLPDFLQQQLKPKEGVIVEVPETVIPEVAGGDKAS 240 Query: 243 -----GDIVHL---------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNS 287 ++ +L G+++G+H G +TIGQR+GLGV EPLFV+ D Sbjct: 241 NAFAKAELENLVKKPSYTVAEGRVVGKHQGAHYFTIGQRKGLGVGGTVEPLFVIDTDVKD 300 Query: 288 SRVIVGPRESLEVHRIYLR--------EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339 + + G ++ HR R EI+W+ + L AV + + +IR Q Sbjct: 301 NVIYTGQGKN---HRGLYRKGLFVKEEEIHWIREDL-TLAVDETMQVEARIRYRQPLEKA 356 Query: 340 FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + R D G+YV F+ + +A GQ ++ + LG G+IS Sbjct: 357 TLYRVDGGMYVIFDNPQTAIAEGQFVAWHHGE----ECLGSGVIS 397 >gi|84624072|ref|YP_451444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|123521874|sp|Q2P2Q7|MNMA_XANOM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|84368012|dbj|BAE69170.1| Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 378 Score = 172 bits (436), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 127/374 (33%), Positives = 183/374 (48%), Gaps = 28/374 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV +SGGVDSSV A L + G + G+ +Q + A G C A D DA VC Sbjct: 5 HIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + + V F + YAAG TP P V CNR VKF L + LGA+ + Sbjct: 61 VLGMPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + RR + R D ++DQSYFL Q QL FP+GD++K ++R Sbjct: 121 ATGHYAQVA-----HRGRRWRLLRGADRDKDQSYFLHQLGQSQLAATLFPIGDLEKSTLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +AR+ GL K DS ICF+ + + + + R A G+I GQ + H G+ Sbjct: 176 RIARDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP-RESLEVHRIYLR--EINWLGD 313 +T+GQR GL + P +VV D S+ + V R+S + +L+ + +W+ Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 F C + R Q P V DDG V V FE+ + V GQ+ V Y D Sbjct: 294 A----PPARRFSCTAQTRYRQPDEPCTVDVQDDGSVQVHFERPQRAVTPGQSLVLY--DG 347 Query: 373 NEARVLGGGIISGS 386 E LGG +I+ + Sbjct: 348 KE--CLGGAVIAAT 359 >gi|168038711|ref|XP_001771843.1| predicted protein [Physcomitrella patens subsp. patens] gi|162676794|gb|EDQ63272.1| predicted protein [Physcomitrella patens subsp. patens] Length = 421 Score = 172 bits (436), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 127/360 (35%), Positives = 182/360 (50%), Gaps = 21/360 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V V +SGGVDSS+ A LL+R GY+V GV ++ +++R + G C A QD DA+RVC+ Sbjct: 40 VAVGISGGVDSSIAALLLQRQGYEVFGVYMRNWDARDEAG-GGHCSADQDYEDAQRVCEH 98 Query: 83 I-NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + DY++++ V F +A G TP P +DCN+ +KF LL Q+GAD Sbjct: 99 LAGIKLHHLDYQKKYWTQVFENFTQKFAMGLTPNPDLDCNQHIKFDALLENALQMGADKF 158 Query: 142 ATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY R SR G + + R +D ++DQSYFL + + FPLG + K V Sbjct: 159 ATGHYARLSRPQCGGPVQ----LLRGIDEDKDQSYFLASVGSAAFERVLFPLGGLTKAQV 214 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQI-LGRHNG 258 RDLA GL A K S ICFV + K+ D + + +E G V ++G LG H G Sbjct: 215 RDLALSEGLVTATKRSSAGICFVGRRKFRDFISEY---VEMEPGPFVCVDGNTHLGLHTG 271 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGDGL 315 I YT GQR G+ + +P +VV D ++ V V +L + W+ G Sbjct: 272 IAAYTHGQRAGIS-GVPKPFYVVGKDVQNNVVYVAMGADHPALFCTSAVAGDPFWI-SGS 329 Query: 316 FEDAVVDG--FKCFVKIRSSQ--DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + DG C K R Q + V + + V + FE+ + GQA V Y D Sbjct: 330 PPKQLQDGQPLTCMFKARYRQSLERCTVCFLDSKNEVAIRFEEPTRAITPGQALVLYDGD 389 >gi|218281120|ref|ZP_03487655.1| hypothetical protein EUBIFOR_00214 [Eubacterium biforme DSM 3989] gi|218217634|gb|EEC91172.1| hypothetical protein EUBIFOR_00214 [Eubacterium biforme DSM 3989] Length = 385 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 123/378 (32%), Positives = 188/378 (49%), Gaps = 29/378 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-------SCCAGQDV 73 M+V+V +SGGVDS+V A LLK+ GYDV ++ ++S + G +C QD Sbjct: 1 MKVLVGLSGGVDSAVAAYLLKKQGYDVTCCFMRNWDSFANNDIAGNPTIKDDTCPQEQDY 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA V + +++ D+ E + + V F S Y G TP P + CN+ +KF Sbjct: 61 LDALAVANHLDLPLQRVDFIEEYWDNVFKTFLSEYEKGRTPNPDILCNKYIKFDSFFEYA 120 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + G D +ATGHY + G + R D +DQ+YFL + ++ FPL Sbjct: 121 MKQGFDKVATGHYASNAEENG-----FTYLTRAKDQNKDQTYFLCQVEKSKIAKTIFPLA 175 Query: 194 DMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQ 251 ++K +R +A E+ L+ +A K DS ICF+ + + + N + +GDIV +N + Sbjct: 176 HLEKPEIRQIAAELNLESVATKKDSTGICFIGERNFRQFLS--NYLPSKDGDIVDVNTSK 233 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLD--KNSSRVI-VGPRESLEVHRIYLRE 307 ++ RH G++ YTIGQR+GL + + P FVV D KN V R+ L ++ Sbjct: 234 VIARHVGVLYYTIGQRKGLNIDHEKGPWFVVGKDVVKNILYVCRTDQRDLLYSDSCIVKG 293 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366 INW+ L E KC K R Q + ++R DD V V + ++ V GQ V Sbjct: 294 INWILPSLEEIPT----KCTCKFRYRQKDQDIEIERLDDTSVLVKYPQTIASVTEGQEAV 349 Query: 367 FYTSDSNEARVLGGGIIS 384 FY D + +GGG+I Sbjct: 350 FYDGD----KCIGGGVIE 363 >gi|251772733|gb|EES53295.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Leptospirillum ferrodiazotrophum] Length = 372 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 125/378 (33%), Positives = 187/378 (49%), Gaps = 33/378 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKG--SCCAGQDVY 74 ++ +V+ MSGGVDS+V A LLK++GYDV GV L+L+ +S +ASK G +CC V Sbjct: 3 RNKSIVIGMSGGVDSAVSAWLLKKEGYDVTGVILRLWGKDSSEASKGWGERTCC---HVP 59 Query: 75 DARRVCDTI-NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +C I N+ + + D E F++ V+ F S+Y GETP PC CN VK L Sbjct: 60 MVEYLCQKILNIPYAIVDAESAFKSDVVDSFKSAYRTGETPNPCTSCNEKVKLPLLRRWA 119 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + G +ATGHY + + + DL +DQSYFL T + FP+G Sbjct: 120 EENGIPKVATGHYT---YWKRSEDFNVSGLAMAHDLAKDQSYFLSRTPDLCPENTVFPVG 176 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH------ 247 M K VR+LARE G + ++Q++CFV + KR+ ++ E D H Sbjct: 177 RMSKPQVRELAREAGFPVEGLLENQEVCFVSE-------KRVTEFLSHEIDQDHRGPWTV 229 Query: 248 --LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 + G+ LG I T GQR+GL VA G L+V +D ++ + R L + Sbjct: 230 RTIAGEALGTIPTGIGLTRGQRKGLSVAGGRRLYVHTVDIQERQLWLSDRSDLFESAFTV 289 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 + + +FE + FV+ RS+ PVP V+ ++G + E+ G+ GQ Sbjct: 290 KSPMGM---MFEKKGKKLGELFVRFRSTMSPVPCRVEDAEEGRF-RLERPHDGIVEGQVA 345 Query: 366 VFYTSDSNEARVLGGGII 383 FY E ++G G+I Sbjct: 346 AFY---DKENILVGSGLI 360 >gi|270294933|ref|ZP_06201134.1| tRNA methyl transferase [Bacteroides sp. D20] gi|270274180|gb|EFA20041.1| tRNA methyl transferase [Bacteroides sp. D20] Length = 350 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 124/369 (33%), Positives = 180/369 (48%), Gaps = 28/369 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D RV++ MSGG DSSV A L+ GY+V GVT + Y +A G + DAR + Sbjct: 4 DKRVLLGMSGGTDSSVAAMRLQEAGYEVTGVTFRFY---EAGDETGY------LEDARAL 54 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + H +D E FR+ +I F Y G TP+PC CN +K++ L + + G Sbjct: 55 ALKLGMKHITYDARELFRSRIIRYFVEEYLRGRTPVPCTVCNNELKWALLAKIADEKGIY 114 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++TGHY+R L G + + D ++DQ++FL+ Q L + P+GD+ K Sbjct: 115 WISTGHYVRKVLSGG-----KYYIAPAADKDKDQTFFLWGLKQDILQRMLLPMGDITKNE 169 Query: 200 VRDLAREMGL-DIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 R A E G +A K DS +CF + F + + +G V G LG H Sbjct: 170 ARSYAAERGFGQVAAKKDSIGVCFCPLDYRSFLKCEVPETLLPGKGRFVDEKGNFLGWHE 229 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD-GLF 316 G YT+GQRRGLG+ + + +FV S+ V++ P SL R+ WLGD L Sbjct: 230 GYPFYTVGQRRGLGIHLNKAVFVKETRVESNEVVLAPLSSL------YRQEMWLGDWNLV 283 Query: 317 EDAVVDGF-KCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNE 374 E++ V G + VKIR + V +G+ V + +A GQA FY D Sbjct: 284 ENSRVLGANEVIVKIRYRKQANRCRVTLTVEGLLRVRLIEPLESIAPGQAAAFYDKD--- 340 Query: 375 ARVLGGGII 383 +LGGGII Sbjct: 341 GYLLGGGII 349 >gi|295134761|ref|YP_003585437.1| tRNA methyl transferase [Zunongwangia profunda SM-A87] gi|294982776|gb|ADF53241.1| tRNA methyl transferase [Zunongwangia profunda SM-A87] Length = 395 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 121/400 (30%), Positives = 195/400 (48%), Gaps = 44/400 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV A LLK GY+VIG+ ++ ++ + C +D DA V + Sbjct: 3 KVVVGLSGGVDSSVSAYLLKEQGYEVIGLFMKNWHDDSVT-ISDECPWLEDSNDAMIVAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + D E+++ ++ + Y G TP P V CNR +KF + + LGAD + Sbjct: 62 KLGIPFQTVDLSEQYKERIVDYMFNEYERGRTPNPDVLCNREIKFDVFMKIALSLGADYV 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + + +G++ + D +DQSYFL TQ+QL FP+G+++K VR Sbjct: 122 ATGHYCR-KGEIEKNGEKIYQLLSGKDNNKDQSYFLCQLTQEQLSKTLFPIGELQKSEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKR------------------INAGIA-LE 242 +A E L ADK DSQ +CF+ + + D +++ GI E Sbjct: 181 RIAAEQELVTADKKDSQGLCFIGKVRLPDFLQQKLKPKEGNIVEIKPDSETYQTGIPEFE 240 Query: 243 GDIVHL------------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSR 289 I L +G+++G+H G +T GQR+GL V EPLFV+ D + Sbjct: 241 SKIEELKFLSQKYQYQPQDGKVVGKHQGAHYFTKGQRKGLAVGGTPEPLFVIDTDVEDNV 300 Query: 290 VIVGP-RESLEVHR----IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN 344 + G ++ ++R I E++W+ L + + +IR Q + + Sbjct: 301 IYTGQGKKHPGIYRKGLFINEDEVHWVRKDL-SLKPGESLELKARIRYRQPLQEATLYQT 359 Query: 345 DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + G+YV F+ + + GQ +Y + +LG G+IS Sbjct: 360 EQGMYVVFKTPQASITEGQFVAWYDGE----ELLGSGVIS 395 >gi|298528464|ref|ZP_07015868.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfonatronospira thiodismutans ASO3-1] gi|298512116|gb|EFI36018.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfonatronospira thiodismutans ASO3-1] Length = 344 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 116/367 (31%), Positives = 179/367 (48%), Gaps = 28/367 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR+ VA+SGG+DS +L+ +G+DV+ + + + K + +C Sbjct: 1 MRIAVAVSGGLDSLASLVMLREEGHDVLALHARFFPRLDEHLEK----------RLKGIC 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 ++ V +V ++ F VI PF Y G TP PC CN +KF LL +LGA Sbjct: 51 TSLGVEMHVTLLQDEFAARVIDPFVQDYLDGLTPNPCARCNMRIKFGLLLDRALELGASA 110 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY + + G ++ R +D +DQSYFL ++L +FP+ K S+ Sbjct: 111 LATGHY--AGIKKNSSGP---VLMRALDQAKDQSYFLCLVPPRRLARAKFPMYHHFKSSM 165 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVV--KRINAGIALEGDIVHLNGQILGRHNG 258 ++ + + + + +S +ICF+ G Y D + + + L G IV +G+ LGRH G Sbjct: 166 QEFLQNRNITVPAREESNEICFIP-GDYRDFIAGRLEKSHEPLPGPIVDSSGRTLGRHQG 224 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 + YT GQRRGLG+A PL+V+ D S+ ++VG RE L R++N + E+ Sbjct: 225 LWRYTPGQRRGLGIAFKHPLYVLRKDLASNTLVVGAREELGAGEFQARDVN-----ILEE 279 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA-SGQACVFYTSDSNEARV 377 V+ R Q P V+ + V + K E G+ GQ Y S + +V Sbjct: 280 PRKWPLDLLVQTRYRQKARPAEVELWGQRMRVRY-KGEPGLPVPGQVAAVY---SPKGQV 335 Query: 378 LGGGIIS 384 L GGII Sbjct: 336 LAGGIIQ 342 >gi|91085987|ref|XP_972131.1| PREDICTED: similar to tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Tribolium castaneum] Length = 417 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 126/381 (33%), Positives = 189/381 (49%), Gaps = 40/381 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDS+V A LLK+ GYD+ GV +Q ++ + KG C A D DA VCD Sbjct: 6 KVVVGISGGVDSAVAALLLKKRGYDIQGVFMQNWD---IADEKGYCSADADYKDAALVCD 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140 +++ ++ + + N V Y G TP P V CNR +KF+ R +LGAD Sbjct: 63 KLDIKLTHVNFVKHYWNEVFSNLIKEYETGNTPNPDVLCNRNIKFNYFYKYARNELGADA 122 Query: 141 LATGHYIRSRL------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 +ATGHY R+ Y + G R + +D +DQ++FL Q+ L FPLGD Sbjct: 123 IATGHYARTSFGSYLEHYNPEKGVR---LLNAVDWFKDQTFFLCQVNQEALQRTMFPLGD 179 Query: 195 MKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQI 252 + K V+ +ARE GL+ IA K +S ICF+ K+ D ++ GD V ++ ++ Sbjct: 180 LMKPEVKKIARENGLEKIARKKESMGICFIGNRKFQDFIREYIDDKP--GDFVDVDTAKV 237 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYL-REIN 309 +G+HNG+ +T+GQR L + P FV +DKN V+ G + L I L E + Sbjct: 238 VGQHNGVHQWTLGQRARLH-SYESPYFVARKDVDKNIIYVVKGTKHPLLYTNIILTSEPH 296 Query: 310 W-------LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362 W L +G+ E C K + ++ V V + G+ + + + + G Sbjct: 297 WIHSQPPDLQNGVLE--------CDFKFQHTKYWVKCQVCQTSKGLIIKVNRYKRAITPG 348 Query: 363 QACVFYTSDSNEARVLGGGII 383 Q V S + LGG I Sbjct: 349 QFAVL----SKDGECLGGARI 365 >gi|315223915|ref|ZP_07865760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Capnocytophaga ochracea F0287] gi|314946087|gb|EFS98091.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Capnocytophaga ochracea F0287] Length = 397 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 124/405 (30%), Positives = 192/405 (47%), Gaps = 52/405 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDSSV A LLK GY+VIG+ ++ ++ + C +D DA V + Sbjct: 3 RVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVTISD-ECPWLEDSNDALLVAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + D E ++ ++ + Y G TP P V CNR +KF + + LGAD + Sbjct: 62 KLGIPFQTVDMSEPYKARIVDYMFNEYEHGRTPNPDVLCNREIKFDVFMKLALSLGADYV 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + +GK+ + D +DQSYFL +Q QL FP+G+++K VR Sbjct: 122 ATGHYCRKE-EIEINGKKIYRLLSGKDENKDQSYFLCQLSQDQLSKALFPIGELQKSEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQ------------QGKYFDVVKRINAGI---------- 239 +A+ L ADK DSQ +CFV Q K D+++ N Sbjct: 181 AIAKAQDLITADKKDSQGLCFVGKVRLPEFLQQKLQPKQGDIIEISNDWKGYTDFDMPRT 240 Query: 240 --ALEGDIVHL---------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNS 287 EG++ +L +G+ +G H G +T GQR+GL V EPLF++ D Sbjct: 241 FETYEGELEYLSQRFVYQPEDGKKIGTHQGAHYFTKGQRKGLNVGGTKEPLFIIETDIEK 300 Query: 288 SRVIVGPRESLEVHRIYLREI--------NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339 + + G + HR R +W+ + L V + + V+IR Q Sbjct: 301 NIIYTGQGHT---HRGLFRSALFIAAPDEHWIREDL-ALKVYESKEFMVRIRYRQPLQKA 356 Query: 340 FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + + ++G+Y+ F + + V GQ +Y D ++G G+IS Sbjct: 357 VLYKVENGLYIHFSEPQSAVTEGQFAAWYNGD----ELVGSGVIS 397 >gi|118595168|ref|ZP_01552515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylophilales bacterium HTCC2181] gi|118440946|gb|EAV47573.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylophilales bacterium HTCC2181] Length = 369 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 128/383 (33%), Positives = 186/383 (48%), Gaps = 44/383 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +VV +SGGVDS+V A LLK GYDV + ++ + + C + QD+ DA Sbjct: 2 KGESIVVGLSGGVDSAVTAWLLKDQGYDVTALFMKNWEDDDEDEY---CSSKQDLLDAIA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + I V V ++ + ++ V F G TP P + CN +KF L+ LGA Sbjct: 59 VAEKIGVDIEVVNFAKEYKEKVFSLFIDGLKTGITPNPDILCNSEIKFDAFLNHALALGA 118 Query: 139 DVLATGHYIRSR-------LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 D +ATGHY + L GDDG +DQSYFL Q QL FP Sbjct: 119 DKIATGHYAKVMERDGLFYLLKGDDG------------SKDQSYFLHRLNQDQLSKSVFP 166 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLN- 249 LG + K+ VR++AR+ L I D+ DS ICF+ + + + + IN G IV + Sbjct: 167 LGGLLKKDVREIARKNSLHIHDRKDSTGICFIGERPFAEFIGGYINKD---PGSIVSADG 223 Query: 250 GQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRES---LEVH 301 G++LG H+G+ YTIGQR+GL + G+P FV+ D ++++VG L Sbjct: 224 GEVLGTHDGLNFYTIGQRQGLKIGGVQKGNGKPWFVISKDFKKNQLVVGQGHDHPLLFND 283 Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVA 360 + +E++W+G+ L + V K R Q P + ND V F + + V Sbjct: 284 GLIAKEMHWIGEKLPRENWV----YAAKTRYRQPDAPCEIDDINDVSATVLFGQKQWAVT 339 Query: 361 SGQACVFYTSDSNEARVLGGGII 383 GQ+ V Y S+ LGGG I Sbjct: 340 PGQSIVIYESNV----CLGGGFI 358 >gi|291514578|emb|CBK63788.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alistipes shahii WAL 8301] Length = 399 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 126/404 (31%), Positives = 190/404 (47%), Gaps = 47/404 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVV+ +SGGVDSSV A LLK G++V+G+ + ++ + +G C D A V Sbjct: 3 RVVIGLSGGVDSSVAAWLLKEQGHEVVGLFMINWHDTTGTL-EGDCPWHDDRVFAELVAR 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +V D +R V+ + Y G TP P V CNR +KF L +LGAD + Sbjct: 62 KLDIELHVVDLSADYRTRVVDYMFAEYERGRTPNPDVLCNREIKFDVFLREALKLGADYV 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R DG+ + D +DQSYFL +Q+QL FP+G + K VR Sbjct: 122 ATGHYCRKAEETLPDGRTIHKLLAGSDPNKDQSYFLCQLSQEQLSRALFPVGGLLKPEVR 181 Query: 202 DLAREMGLDIADKSDSQDICFV---------------QQGKYFDVV----KRINAGIALE 242 +A E GL A + DSQ ICFV ++G +++ K + + E Sbjct: 182 RIAEEQGLATAKRKDSQGICFVGKVDLPTFLQQKLAPKKGNIHEILPTWPKYVREEVPAE 241 Query: 243 GDIVH--------------LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNS 287 G+ +G+ +G HNG YTIGQR+GLG+ E LF++ D Sbjct: 242 GEPTTGQLAALAEPWRYTVRDGKKIGEHNGAHYYTIGQRKGLGIGGRRESLFILATDTVQ 301 Query: 288 SRVIVG-----PRESLEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFV 341 + + VG P I EI+W+ A F ++ R +FV Sbjct: 302 NVIWVGEGDAHPGLWRPALHIAPGEIHWVNPARELTAGQSARFSVRIRYRQLLQGARLFV 361 Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385 + D+G Y+ F++ + G+ GQ +Y D +++G G+I G Sbjct: 362 R--DEGAYLVFDRPQRGITPGQFAAWYDGD----QLVGSGVIEG 399 >gi|283852168|ref|ZP_06369441.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfovibrio sp. FW1012B] gi|283572394|gb|EFC20381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfovibrio sp. FW1012B] Length = 357 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 120/366 (32%), Positives = 171/366 (46%), Gaps = 24/366 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR+ VA+SGG DS + LL+ +G+DV+ V + Q C Sbjct: 1 MRLAVAVSGGADSLLSLGLLRAEGHDVVAVHAHFLPPDMKGQELARAIETQ--------C 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + V D F V+ PF ++YAAG+TP PC CNR +KF L+ R+LGAD Sbjct: 53 GRLGVPFAAVDLSREFGRQVVAPFIAAYAAGQTPNPCAACNRDMKFGLLMEAARELGADK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGH+ +RL D G + R D RDQSYFL + L FPL +K Sbjct: 113 LATGHF--ARLQETDRGP---ALFRGADDSRDQSYFLSLVPRDALARAVFPLARRRKADH 167 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 +GL +S+++CFV Y ++ A + G IV +G LG H G+ Sbjct: 168 PAALAALGLAPPLPKESREVCFVPGDDYRAFLEASGAALTGPGPIVLTDGTRLGTHQGLW 227 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD--GLFED 318 +TIGQR+GLG+A +PL+V+ D ++ ++VG R L+ N L D G Sbjct: 228 RHTIGQRKGLGIAYADPLYVLGKDTAANTLVVGVRADLDATACRTGPANLLADPAGWPAT 287 Query: 319 AVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 A V C+ ++R P P V D G+ + F+ GQ Y + RV Sbjct: 288 ATVLAQTCY-RMR----PRPARAVLGPDGGLALTFDAPVARPTPGQVATVYDA---AGRV 339 Query: 378 LGGGII 383 L GG++ Sbjct: 340 LAGGVL 345 >gi|160896253|ref|YP_001561835.1| tRNA-specific 2-thiouridylase MnmA [Delftia acidovorans SPH-1] gi|205816627|sp|A9BS40|MNMA_DELAS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|160361837|gb|ABX33450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Delftia acidovorans SPH-1] Length = 372 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 127/380 (33%), Positives = 190/380 (50%), Gaps = 34/380 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDS+V A LLK+ G++V+G+ ++ + S+ C + D DA V D Sbjct: 5 RVVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---YCSSNVDFVDAAAVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + ++ +++ V F Y AG TP P V CN +KF L +LGA+ + Sbjct: 62 VVGIEIEHVNFASEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAEKI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R + + + + +D +DQSYFL Q QL FP+G++KK VR Sbjct: 122 ATGHYARVRQ---NPDTQLFELLKGLDPAKDQSYFLHRLNQAQLSRSMFPVGELKKTEVR 178 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGII 260 +A E+GL A K DS ICF+ + + D + R I+ E G+I+ + LG+H G+ Sbjct: 179 RIAEEIGLPNAKKKDSTGICFIGERPFRDFLNRY---ISKEPGNILDDRNRKLGKHVGLS 235 Query: 261 NYTIGQRRGLGVAM------------GEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLR 306 YT+GQR GLG+ +P FV LD N+ RV+ G + + L Sbjct: 236 FYTLGQRSGLGIGGVKEKGAPRGGGDHDPWFVARKELDTNTLRVVQGHDHPWLLSQSLLA 295 Query: 307 -EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQA 364 +++W+ A +G K R Q P + +G +DF + + V GQ+ Sbjct: 296 DQVSWVAG----HAPAEGKAYGSKTRYRQPDSPALISGATPEGFRLDFPEPQWAVTPGQS 351 Query: 365 CVFYTSDSNEARVLGGGIIS 384 V Y D LGGGII+ Sbjct: 352 AVLYDGDV----CLGGGIIA 367 >gi|262165401|ref|ZP_06033138.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio mimicus VM223] gi|262025117|gb|EEY43785.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio mimicus VM223] Length = 335 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 105/330 (31%), Positives = 172/330 (52%), Gaps = 27/330 (8%) Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C A +D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 18 CTAAEDLADAQAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKF 77 Query: 127 SDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 L + L AD +A GHY+R +G++ + M R +D +DQSYFL+ + +Q+ Sbjct: 78 KAFLEFADEVLDADYIAMGHYVRRTF--PQNGEKPQ-MLRGLDNNKDQSYFLYTLSHEQV 134 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+GD++K VR +A E GL A K DS ICF+ + K+ D + R A G I Sbjct: 135 ARSLFPVGDLEKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKI 192 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV-----GPR 295 G+++G H G++ +T+GQR+GL + + +P +V DK+ R ++ Sbjct: 193 ETPEGKVIGEHQGLMYHTLGQRKGLHIGGMKESNEQPWYVA--DKDLKRNVLIAVQGADH 250 Query: 296 ESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEK 354 L+ H + +++W+ + + +C VK R Q D + +DD + V F++ Sbjct: 251 PLLKSHGLVAAQLHWVD----RTPITEPLRCSVKTRYRQSDIACTIIPLSDDRIKVMFDE 306 Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGIIS 384 +V V GQ+ VFY + LGGGII Sbjct: 307 PQVAVTPGQSAVFYQGEI----CLGGGIIE 332 >gi|284931128|gb|ADC31066.1| Trifunctional protein RibF/TrmU (FAD synthetase, Riboflavin kinase, tRNA-specific 2-thiouridylase) [Mycoplasma gallisepticum str. F] Length = 657 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 127/380 (33%), Positives = 200/380 (52%), Gaps = 31/380 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--------SRKASKRKGSCCAGQDV 73 RVVVA+SGGVDS+V A LL++ GYDV+ +Q ++ S A + C A QD Sbjct: 288 RVVVALSGGVDSAVCAYLLQQQGYDVVAAFMQNWDKDLNFELLSDHADDQIQGCDAKQDY 347 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+++C+ + + Y F++ E++ N V + Y G TP P V CN+ KF ++ Sbjct: 348 EDAQKLCEQLKIKLYHFNFVEQYWNDVFLKVLEDYKKGLTPNPDVLCNQFGKFGWFINAL 407 Query: 134 R-QLGADV-LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 R Q G ++ +A GHY ++L DD + D +DQ+YFL ++QL ++ FP Sbjct: 408 RKQFGNNIKIAFGHY--AKLITKDD---EVFLVHTKDHNKDQTYFLTMLKKEQLKNIIFP 462 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-G 250 L ++ K +VR++A++ L +A+K DS ICF+ + + + N +G I+ ++ Sbjct: 463 LSELDKPTVREIAKQANLYVANKKDSTGICFIGERNFKQFLS--NYLAIKKGPIILIDEN 520 Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRES----LEVHRIYL 305 + +G H+G+ YTIGQ R L V E +FV D N++ + V S L L Sbjct: 521 KKIGEHDGLYFYTIGQSRRLHVGGTKEKIFVCNKDYNNNTLYVCYESSKDQYLSSVSCEL 580 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQA 364 NWL D +D +++ K +++ R Q V +DD V V + K ++GV GQ Sbjct: 581 ENFNWLTDT--KDQLLNK-KLWIRFRHRQKLQECEIVSYHDDKVIVKYTK-QIGVTPGQY 636 Query: 365 CVFYTSDSNEARVLGGGIIS 384 V Y D N V+GGG I+ Sbjct: 637 GVIY--DQN-LWVVGGGKIT 653 >gi|213962751|ref|ZP_03391012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Capnocytophaga sputigena Capno] gi|213954746|gb|EEB66067.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Capnocytophaga sputigena Capno] Length = 397 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 125/406 (30%), Positives = 194/406 (47%), Gaps = 54/406 (13%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDSSV A LLK GY+VIG+ ++ ++ + C +D DA V + Sbjct: 3 RVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVT-ISDECPWLEDSNDALLVAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + D E ++ ++ + Y G TP P V CNR +KF + + LGAD + Sbjct: 62 KLGIPFQTVDMSEPYKARIVDYMFNEYEHGRTPNPDVLCNREIKFDVFMKLALSLGADYV 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + +GK+ + D +DQSYFL +Q+QL FP+G+++K VR Sbjct: 122 ATGHYCRKE-EIEINGKKIYRLLSGKDENKDQSYFLCQLSQEQLSKALFPIGELQKSEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFV------------QQGKYFDVVKRIN--AGIALEGDIVH 247 +A+ L ADK DSQ +CFV Q K D+++ N G A E D++ Sbjct: 181 AIAKAQDLITADKKDSQGLCFVGKVRLPEFLQQKLQPKQGDIIEIPNDWKGYA-EFDMLR 239 Query: 248 L--------------------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKN 286 L +G+ +G H G +T GQR+GL V EPLF++ D Sbjct: 240 LFETYEDELKYLSQRFVYQPEDGKKVGTHQGAHYFTKGQRKGLNVGGTKEPLFIIETDIE 299 Query: 287 SSRVIVGPRESLEVHRIYLREI--------NWLGDGLFEDAVVDGFKCFVKIRSSQDPVP 338 + + G + HR R +W+ + L V + + V+IR Q Sbjct: 300 KNIIYTGQGHT---HRGLFRSALFIATPDEHWIREDL-ALKVYESKEFMVRIRYRQPLQK 355 Query: 339 VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + + +G+Y+ F + + + GQ +Y+ D ++G G+IS Sbjct: 356 AVLYKVKNGLYIHFSEPQSAITEGQFAAWYSGD----ELVGSGVIS 397 >gi|74316869|ref|YP_314609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thiobacillus denitrificans ATCC 25259] gi|123612137|sp|Q3SKH7|MNMA_THIDA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|74056364|gb|AAZ96804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thiobacillus denitrificans ATCC 25259] Length = 358 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 122/370 (32%), Positives = 184/370 (49%), Gaps = 24/370 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDS+V A LLK+ GYDV+GV ++ ++ ++ C A QD D V D Sbjct: 4 RVVVGLSGGVDSAVAAYLLKQQGYDVLGVFMKNWDDDDNTEH---CTARQDFLDVLAVAD 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + ++ ++ V F + Y AG TP P V CN +KF L GAD + Sbjct: 61 VLGIEVEAVNFAAEYKERVFSYFLAEYQAGRTPNPDVLCNAEIKFKAFLDDAIARGADYI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+ G D R + R D +DQSYFL+ Q QL FPL + K VR Sbjct: 121 ATGHYVGK----GHDTFGRAALLRARDANKDQSYFLYRLNQAQLSPALFPLARLPKPEVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++AR +GL A K DS ICF+ + + + ++R GD+ G+++G+H G++ Sbjct: 177 EIARRIGLPNAAKKDSTGICFIGERNFREFLERYLP--RDPGDMTTPEGRVVGQHQGLMY 234 Query: 262 YTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGD 313 YT+GQR+GLG+ P FV D ++ ++V L+ + +++W+ Sbjct: 235 YTLGQRQGLGIGGQKGGSDAPWFVAAKDMATNTLVVVQGHDHPLLQRFGVGAGQLSWIA- 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 G+ D + + R + D DD + + F+ + V GQ+ V Y D Sbjct: 294 GVAPDPERP-YTAKTRYRQT-DAACHITTLYDDTLELVFDAPQWAVTPGQSVVLYDGDV- 350 Query: 374 EARVLGGGII 383 LGGGII Sbjct: 351 ---CLGGGII 357 >gi|326319478|ref|YP_004237150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376314|gb|ADX48583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 403 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 127/411 (30%), Positives = 194/411 (47%), Gaps = 53/411 (12%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + +PK R+VV +SGGVDS+V A LLK+ G++V+G+ ++ + S+ C + D Sbjct: 1 MTASPK-QRIVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---YCSSNVDF 56 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA V D I + ++ +++ V F Y AG TP P V CN +KF L Sbjct: 57 VDAAAVADVIGIEIEHVNFAAEYKDRVFAEFLREYEAGRTPNPDVLCNAEIKFKAFLDHA 116 Query: 134 RQLGADVLATGHYIRSRLYVGDDG----------------------KRRRIMCRPMDLER 171 ++GA+ +ATGHY R R D G R + + +D + Sbjct: 117 MRVGAEKIATGHYARVRRVAADPGAMSGRHDRMESHATACDSAQDPHWRYELLKGLDPAK 176 Query: 172 DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDV 231 DQSYFL Q QL FP+G+++K VR +A E+GL A K DS ICF+ + + + Sbjct: 177 DQSYFLHRLNQAQLSRTLFPVGELRKTEVRRIAEEIGLPNAKKKDSTGICFIGERPFREF 236 Query: 232 VKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV----------AMGE--PLF 279 + R G I+ G+ LG+H G+ YT+GQR+GLG+ GE P F Sbjct: 237 LNRYIQ--HAPGPILDDRGRKLGQHVGLSFYTLGQRQGLGIGGVKEKGAQRGGGEHAPWF 294 Query: 280 VV--YLDKNSSRVIVGP-RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP 336 V +++N RV+ G L H + + +W+ G A C K R Q Sbjct: 295 VARKEVERNVLRVVQGHDHPWLLSHTLQATDASWVA-GRPPAAGA----CAAKTRYRQQD 349 Query: 337 VPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 V + G + + F +++ V GQ+ V Y + LGGG+I+ + Sbjct: 350 AACTVTPAEGGDFALAFPEAQWAVTPGQSAVLYDGEV----CLGGGVITAA 396 >gi|260062425|ref|YP_003195505.1| tRNA-specific 2-thiouridylase MnmA [Robiginitalea biformata HTCC2501] gi|88783988|gb|EAR15159.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Robiginitalea biformata HTCC2501] Length = 399 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 124/402 (30%), Positives = 191/402 (47%), Gaps = 47/402 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV A LLK+ GY+VIG+ ++ ++ + + C D DA V + Sbjct: 6 KVVVGLSGGVDSSVTALLLKQQGYEVIGLFMKNWHDDSVTISR-ECPWLDDSNDALIVAE 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + D ++ ++ Y G TP P V CNR +KF L + LGAD + Sbjct: 65 KLGIPFQTVDLSAAYKERIVNYMFREYQQGRTPNPDVLCNREIKFDLFLKIAMDLGADFV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R G DG+ R + D +DQSYFL Q+QL FP+G ++K VR Sbjct: 125 ATGHYCRKDEATGPDGQVRYRLLAGADANKDQSYFLCQLNQEQLSRALFPIGHLQKSEVR 184 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------- 248 LA E GL ADK DSQ +CF+ + + + +++ EG IV + Sbjct: 185 ALAAENGLVTADKKDSQGLCFIGKVRLPEFLQQQLE--PREGRIVEIPATAPQYLREVPE 242 Query: 249 --------------------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNS 287 +G+ +G H G +TIGQR+GL V +PLFV+ D Sbjct: 243 FSNRREELAFYSEKPVYDPSDGRDVGLHQGAHYFTIGQRKGLDVGGTPDPLFVIQTDVAK 302 Query: 288 SRVIVGPRESLE-VHRIYL----REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ 342 + + G +S ++R L E++W+ L + + +IR Q + Sbjct: 303 NIIYTGQGKSHPGLYRRTLFVADDELHWVRPDLSLNP-DQTMEVQARIRYRQALQQATLY 361 Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + + G+YVDF + + + GQ +Y D ++G G+I+ Sbjct: 362 KIEGGLYVDFREPQSAITEGQFVAWYLGDE----LIGSGVIA 399 >gi|254672922|emb|CBA07279.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis alpha275] Length = 367 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 125/383 (32%), Positives = 184/383 (48%), Gaps = 26/383 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++ NP + ++V +SGGVDSSV AALLK+ GY V GV +Q + + C Q Sbjct: 1 MNTTANPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 55 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 56 DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 115 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 116 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 170 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 171 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 228 Query: 252 ILGRHNGIINYTIGQRR-GLGVAMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308 +G H G++ YT+GQR+ GEP FV L KN V+ G L +Y R + Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGGGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 284 Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 N L L E + C + R + P + + V F++ + V GQ+ V Sbjct: 285 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCELRYLDEETAELV-FDEPQWAVTPGQSAV 343 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 Y D LGGGII + + Sbjct: 344 LYEGDV----CLGGGIIQSTDKP 362 >gi|254669809|emb|CBA04142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis alpha153] Length = 367 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 123/380 (32%), Positives = 183/380 (48%), Gaps = 24/380 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + C QD Sbjct: 1 MNTTANTTNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 58 FDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 GAD +ATGHY R + G + + +D +DQSYFL+ QL FPLG Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ + Sbjct: 173 GLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGKTV 230 Query: 254 GRHNGIINYTIGQRR-GLGVAMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI-- 308 G H G++ YT+GQR+ GEP FV L KN V+ G L +Y R + Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGGGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSLVM 286 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 N L L E + C + R + P + +D+ + F++ + V GQ+ V Y Sbjct: 287 NDLSFTLPERPKAGRYTCKTRYRMADAPCEL-RYLDDETAELVFDEPQWAVTPGQSAVLY 345 Query: 369 TSDSNEARVLGGGIISGSKR 388 D LGGGII + + Sbjct: 346 EGDV----CLGGGIIQSTDK 361 >gi|167825759|ref|ZP_02457230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 9] Length = 352 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 111/324 (34%), Positives = 156/324 (48%), Gaps = 22/324 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D I + Sbjct: 1 MSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVADLIGID 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 ++ +++ V F Y+AG TP P V CN +KF L LGA +ATGHY Sbjct: 58 VEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTIATGHY 117 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 R R G R + + D +DQSYFL Q QL FPLG++ K VR++A + Sbjct: 118 ARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVREIAAQ 172 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 +GL A K DS ICF+ + + D + R G + +G+ +G H G+ YT GQ Sbjct: 173 IGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAFYTFGQ 230 Query: 267 RRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGDGLFED 318 R+G+G+ GEP FV D N+ V+ G L + ++W+ + Sbjct: 231 RKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG----E 286 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQ 342 DG +C K R Q P V+ Sbjct: 287 PPADGARCGAKTRYRQADAPCVVR 310 >gi|309378502|emb|CBX22855.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 383 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 125/382 (32%), Positives = 186/382 (48%), Gaps = 26/382 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++ NP + ++V +SGGVDSSV AALLK+ GY V GV +Q + + C Q Sbjct: 17 MNTTSNPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 71 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 72 DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLD 131 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 132 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 186 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 187 LGGLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGK 244 Query: 252 ILGRHNGIINYTIGQRR-GLGVAMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308 +G H G++ YT+GQR+ GEP FV L KN V+ G L +Y R + Sbjct: 245 TVGEHVGLMFYTLGQRKGLGIGGGGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 300 Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 N L L E + C + R + P + +D+ + F++ + V GQ+ V Sbjct: 301 VMNDLSFTLPERPKEGHYTCKTRYRMADAPCEL-RYLDDETAELVFDEPQWAVTPGQSAV 359 Query: 367 FYTSDSNEARVLGGGIISGSKR 388 Y D LGGGII + + Sbjct: 360 LYDGDI----CLGGGIIQTTDK 377 >gi|304313061|ref|YP_003812659.1| Probable tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [gamma proteobacterium HdN1] gi|301798794|emb|CBL47027.1| Probable tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [gamma proteobacterium HdN1] Length = 387 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 124/397 (31%), Positives = 199/397 (50%), Gaps = 41/397 (10%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 +PK +V+V MSGGVDSSV A LL ++GY+V G+ ++ + ++ C A D+ DA Sbjct: 3 HPK--KVIVGMSGGVDSSVAAWLLLQEGYEVEGLFMKNWEEDDGTEY---CTALTDLADA 57 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++V DT+ + + ++ + + V F + Y G TP P + CN+ +KF L L Sbjct: 58 QQVADTLGIRLHTANFAAEYWDRVFEYFLAEYKGGRTPNPDILCNKEIKFRAFLDYALTL 117 Query: 137 GADVLATGHY-IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 GAD +ATGHY R R + G +C+ +D +DQSYFL A + +QL FPLG M Sbjct: 118 GADAIATGHYATRGRNTQTEGGGEIAELCKGVDSNKDQSYFLHAVSGKQLAKTLFPLGKM 177 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K VR +A+E G K DS ICF+ + ++ D +++ A G IV +G ++G Sbjct: 178 LKPEVRRIAKEQGFTNHAKKDSTGICFIGERRFRDFLQQYIP--AQPGQIVSESGAVVGE 235 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN- 309 H G++ YTIGQR+G+G+ A P +V++ D + +++++G + + R++ R +N Sbjct: 236 HQGLMYYTIGQRQGIGIGGIKDADENPWYVLHKDLDKNQLLIG--QGNDHPRLFSRTLNA 293 Query: 310 ----WLGDGLF----------------EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY 349 W+ + V + + +P Q G+ Sbjct: 294 SRIEWVSGKPPSLPLICTAKTRYRQPDQSCTVSAMPHNPSLNAGHEPF-AEAQGEPYGIS 352 Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 V F++ + V GQ VFY D LGGG I + Sbjct: 353 VHFDEPQRAVTPGQYVVFYQGDV----CLGGGPIEST 385 >gi|171913655|ref|ZP_02929125.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Verrucomicrobium spinosum DSM 4136] Length = 365 Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 117/376 (31%), Positives = 182/376 (48%), Gaps = 28/376 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++ A+SGGVDSSV AALL R+G+DV G ++ N G C +D+ DAR V Sbjct: 1 MKILAALSGGVDSSVAAALLVREGHDVSGAYMK--NWINEENIIGHCPWQEDIEDARAVA 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + V + +R V+ + Y G TP P V CNR +KF L + G D Sbjct: 59 DQLGIEFRVVNLMREYREKVVKYLLAGYQEGITPNPDVMCNREMKFGVLWEWAKDHGYDA 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R L + I+ R +D +DQ+YFL +Q+ RFP+G + K V Sbjct: 119 IATGHYARWELPA--EPGAHPIVRRGVDGNKDQTYFLAMMRPEQVEIARFPIGHLPKAEV 176 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R A +GL A+K DSQ ICF+ + K D ++ G+IV+L G++LG H G+ Sbjct: 177 RVEASRLGLKTAEKKDSQGICFIGEVKMEDFLRTFVPDNP--GNIVNLEGKVLGEHRGLH 234 Query: 261 NYTIGQRRGLGVA--MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 YT+GQR+GL V + + +VV + ++ +V E + ++ R+ + Sbjct: 235 LYTLGQRKGLRVPSNLYKQAYVVVAKRPAANELVVAIEQADTPLLWARK------AILTQ 288 Query: 319 AVVDGFKCFVKIRSSQDP---VPV-------FVQRNDDGVYVDFEKSEVGVASGQACVFY 368 G V R + P P F + + + +++ + + GQ C Y Sbjct: 289 ISTTGPDLLVPRRLNAQPRYRCPAGMAMYTPFEREDGWAAELVYDEPQRALTPGQICALY 348 Query: 369 TSDSNEARVLGGGIIS 384 D ++LGG + Sbjct: 349 DGD----QLLGGAVFE 360 >gi|17538240|ref|NP_502120.1| hypothetical protein B0035.16 [Caenorhabditis elegans] gi|20141962|sp|Q17440|MTU1_CAEEL RecName: Full=Probable mitochondrial tRNA-specific 2-thiouridylase 1 gi|13548315|emb|CAA97418.2| C. elegans protein B0035.16, confirmed by transcript evidence [Caenorhabditis elegans] Length = 375 Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 121/378 (32%), Positives = 187/378 (49%), Gaps = 28/378 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVV+ MSGGVDS+V A LLK+ G+DVIG L + N + C +D DAR VCD Sbjct: 3 RVVIGMSGGVDSAVSAFLLKKRGFDVIG--LHMINWDVQEEGTSHCPRSKDESDARNVCD 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 +N+ + ++ + + N V + F +Y G T +P +DCN+++KF + R+ AD Sbjct: 61 RLNIPFHTVNFVKEYWNDVFLKFLENYKNGRTTVPDIDCNQSIKFDVFHKIAREKFNADF 120 Query: 141 LATGHYIRSRLYVGD------DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 +ATGHY + GD D R+ D +DQ++FL Q+QL FPLG Sbjct: 121 IATGHYATTNF--GDFQQNAKDSDEIRLFSG-KDPLKDQTFFLCTVNQEQLKRAMFPLGS 177 Query: 195 MKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQI 252 ++K V+ +A E G ++A K +S ICF+ + K F ++ I + G I+ NG Sbjct: 178 LQKSEVKRIAEEQGFQEVAKKPESMGICFIGKKKRFSDF--LDEYIEPKPGRILLKNGSE 235 Query: 253 LGRHNGIINYTIGQR---RGLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLR 306 +G H+GI +TIG+R + L FV ++ ++ +I L R + Sbjct: 236 IGNHHGIHQFTIGKRINGKYLEARSHLGFFVSHIHSDTGDIIACEGSHHPDLYASRFLIN 295 Query: 307 EINWLGD-GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 W+ F + F C +I+ + P+P ++ + + V + A GQ C Sbjct: 296 HPKWIRTFDPFNRISSNNFLC--RIQRTHPPIPCVAEKQEQFLSVIPRLALRATAPGQMC 353 Query: 366 VFYTSDSNEARVLGGGII 383 VFY + NE LGGG I Sbjct: 354 VFYNT-KNEC--LGGGEI 368 >gi|167837825|ref|ZP_02464708.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia thailandensis MSMB43] Length = 311 Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 111/325 (34%), Positives = 155/325 (47%), Gaps = 22/325 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D I + Sbjct: 1 MSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVADLIGID 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 ++ +++ V F Y+AG TP P V CN +KF L LGA +ATGHY Sbjct: 58 VEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTIATGHY 117 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 R R G R + + D +DQSYFL Q QL FPLG++ K VR++A + Sbjct: 118 ARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVREIAAQ 172 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 +GL A K DS ICF+ + + D + R G + +G+ +G H G+ YT GQ Sbjct: 173 IGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAFYTFGQ 230 Query: 267 RRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGDGLFED 318 R+G+G+ GEP FV D N+ V+ G L + ++W+ + Sbjct: 231 RKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG----E 286 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR 343 DG +C K R Q P R Sbjct: 287 PPADGARCGAKTRYRQADAPCAFGR 311 >gi|194246580|ref|YP_002004219.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Phytoplasma mali] gi|193806937|emb|CAP18369.1| tRNA (5-methylaminomethyl-2-thioruidylate) methyltransferase [Candidatus Phytoplasma mali] Length = 385 Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 123/382 (32%), Positives = 180/382 (47%), Gaps = 31/382 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 +V++ +SGGVDSSV A LLK+ GY V V ++ ++S KG+ C +D Sbjct: 4 KVIIGLSGGVDSSVAALLLKQKGYLVEAVFMKNWDSGLNFDIKGNPDIKELVCPQTKDYQ 63 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA ++ + + + D+ E + N V F S TP P V CN +KF+ Sbjct: 64 DALKISQQLEIKLHKVDFVEEYWNKVFKYFLDSLKKNLTPNPDVLCNNEIKFNVFTKYVD 123 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 D +ATGHY + D + I+ + D +DQSYFL Q QL + FPLG+ Sbjct: 124 TFKPDFIATGHYAN----IDYDKNNKLILKKAFDTNKDQSYFLSQLKQHQLKKIIFPLGN 179 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 + K VR++A++ GL A+K DS ICF+ + ++FD +K N G + L+G L Sbjct: 180 LTKPEVREIAKKAGLINANKKDSTGICFIGERRFFDFLK--NYLPMKPGKMKKLDGTYLK 237 Query: 255 RHNGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRESLEVHRIY-----L 305 H G I YTIGQR+GLG+ + P FVV KN + I+ + E +Y + Sbjct: 238 EHRGTIYYTIGQRKGLGLGGCQFNQSPWFVV--GKNLKKNILYVEQGSEHFYLYSDSALI 295 Query: 306 REINWLGD--GLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASG 362 ++ W G + E + K R Q D N+ V V + + V G Sbjct: 296 VDVVWRGTIYDIQEQIKISKKNLNAKFRYRQLDQKISITWLNNTTVKVYYPQKIKAVTPG 355 Query: 363 QACVFYTSDSNEARVLGGGIIS 384 Q C FY D LG G+I Sbjct: 356 QICAFYLEDI----CLGSGMIK 373 >gi|238021297|ref|ZP_04601723.1| hypothetical protein GCWU000324_01196 [Kingella oralis ATCC 51147] gi|237868277|gb|EEP69283.1| hypothetical protein GCWU000324_01196 [Kingella oralis ATCC 51147] Length = 362 Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 120/374 (32%), Positives = 185/374 (49%), Gaps = 22/374 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + ++V +SGGVDSSV AALL + G++V G+ +Q + + C +D DA Sbjct: 2 QSQNIIVGLSGGVDSSVTAALLHQQGHNVRGIFMQNWEDDNNDQY---CSIKEDSLDAMA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + + ++ ++++ V F Y AG TP P V CN +KF L GA Sbjct: 59 VADIIGIDIDIVNFAAQYKDKVFAYFLQEYEAGRTPNPDVLCNAEIKFKCFLDHAIAQGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + G + + D +DQSYFL+ QL FPLG M+K Sbjct: 119 EAIATGHYARKEVRNG-----VHYLLKGADGSKDQSYFLYRLQPFQLERALFPLGGMQKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR LA + L A K DS ICF+ + + + +++ G++V +G+I+G H G Sbjct: 174 EVRRLASDFRLPTAAKKDSTGICFIGERPFREFLQKYLP--THNGNMVTPDGKIVGEHIG 231 Query: 259 IINYTIGQRRGLGV-AMGEPLFVV--YLDKNSSRVIVGPRESLEVH-RIYLREINWLGDG 314 + YTIGQR+GLG+ GEP FV L +N V+ G + L + + +++W Sbjct: 232 LTFYTIGQRKGLGIGGAGEPWFVAGKNLARNELIVVQGHDDPLLYSGSLKMNQLSWT--- 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 L E + C + R + P + +D + F+ + V GQ+ V Y D Sbjct: 289 LPEKPAAGRYTCKTRYRMADAPCELRY-LDDHTAELVFDAPQWAVTPGQSAVLYDGDI-- 345 Query: 375 ARVLGGGIISGSKR 388 LGGGII+ + + Sbjct: 346 --CLGGGIITETDK 357 >gi|91215966|ref|ZP_01252935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Psychroflexus torquis ATCC 700755] gi|91185943|gb|EAS72317.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Psychroflexus torquis ATCC 700755] Length = 397 Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 121/402 (30%), Positives = 191/402 (47%), Gaps = 46/402 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDSSV A L K GY+VIG+ ++ ++ + C +D DA V + Sbjct: 3 RVVVGLSGGVDSSVAAYLCKEKGYEVIGLFMKNWHDDSVT-ISDECPWLEDSNDAMLVAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + D ++++ ++ + Y G TP P V CNR +KF + + LGAD + Sbjct: 62 KLGIPFQTVDLSKQYKERIVDYMFAEYEKGRTPNPDVLCNREIKFDVFMDIATSLGADYV 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + R++ D +DQSYFL +Q+QL FP+G+++K VR Sbjct: 122 ATGHYCRKDSIEKNSETIYRLLAGKDD-NKDQSYFLCQVSQKQLAKTLFPVGELQKSEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVK---RINAGIALEGDIVH----------- 247 +A+ L ADK DSQ +CF+ + K D ++ + G +E D H Sbjct: 181 QIAKSQNLITADKKDSQGLCFIGKVKLPDFLQQKLKSKEGQVIEIDSSHDIFKAEKSAKT 240 Query: 248 -------------------LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNS 287 G++LG H G +T GQR+GL + EPLFV+ D + Sbjct: 241 DSELITQLKKDSKKLSLKPEFGKVLGTHVGAHFFTKGQRKGLAIGGTKEPLFVIDTDVEN 300 Query: 288 SRVIVGPRESLE-VHRIYLR----EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ 342 + + G ++ +H+ L E++W+ L E D + +IR Q + Sbjct: 301 NILYTGQGKTHPGLHKKGLWVTNDEVHWIRQDL-ELKEGDTMEVMARIRYRQPLEKAKLY 359 Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + D +YV FE + ++ GQ +Y D +LG G+I+ Sbjct: 360 KMKDELYVIFEDEQTAISEGQFVAWYHED----ELLGSGVIA 397 >gi|254468139|ref|ZP_05081545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [beta proteobacterium KB13] gi|207086949|gb|EDZ64232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [beta proteobacterium KB13] Length = 364 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 126/374 (33%), Positives = 187/374 (50%), Gaps = 28/374 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++V +SGGVDS+V A +LK+ G++V G+ ++ + +A C + QD+ DA Sbjct: 2 KKKNIIVGLSGGVDSAVTAHILKQQGHNVRGLFMKNW---EADDDDEYCSSKQDLIDAIS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + I + V ++ + ++ V F G TP P + CN +KF L+ QLGA Sbjct: 59 VAEKIGIDIEVVNFAKEYKEKVFNLFIDGLKKGFTPNPDILCNSEIKFEAFLNHAMQLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY V DG + + MD +DQSYFL QQQL FPLG + K Sbjct: 119 DHIATGHYAD---VVEKDG--LFYLLKGMDSTKDQSYFLHKLNQQQLSKSIFPLGKILKS 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A+E L D+ DS ICF+ + + + + + GDIV ++G+ +G+HNG Sbjct: 174 DVRKIAKENNLHNHDRKDSTGICFIGERPFAEFLNQFIP--KNPGDIVTVDGKNIGKHNG 231 Query: 259 IINYTIGQRR-----GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT+GQR+ G GEP FV D +++IV +L I EI+ Sbjct: 232 LTFYTVGQRQGLGIGGTSSGSGEPWFVAKKDMKENQLIVAQGKNHPALYHDSIEAEEIHA 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + +V+ KIR Q D + N DG+ F + + V GQ VFY Sbjct: 292 ISNSFPIQSVIGA-----KIRYRQPDAACQINEINSDGLVSFFGQKQWAVTPGQYIVFY- 345 Query: 370 SDSNEARVLGGGII 383 DSN LGG +I Sbjct: 346 -DSN--ICLGGAVI 356 >gi|260799001|ref|XP_002594488.1| hypothetical protein BRAFLDRAFT_87680 [Branchiostoma floridae] gi|229279722|gb|EEN50499.1| hypothetical protein BRAFLDRAFT_87680 [Branchiostoma floridae] Length = 383 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 121/369 (32%), Positives = 181/369 (49%), Gaps = 24/369 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VVVA+SGGVDSSV A LLKR GY V GV ++ +++ G C A +D DA VC Sbjct: 5 HVVVALSGGVDSSVAALLLKRKGYQVTGVFMRNWDT---VNELGVCQADRDCEDAEYVCR 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140 +++ + + + + N V Y G TP P + CN+ +KF + V + AD Sbjct: 62 RLDIPFHQVNLVKDYWNDVFSEMLKEYQHGWTPNPDILCNKRIKFRTFFNYVMDKFEADA 121 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R+ ++ D K + + +D +DQ++FL QQ L FPLG++ K V Sbjct: 122 LATGHYARTSIH---DVK----LLQALDSWKDQTFFLSQIPQQALRRALFPLGELTKPVV 174 Query: 201 RDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258 + +A++ G IA K +S ICF+ + ++ G V ++G++LG H G Sbjct: 175 KQMAQDAGFTHIAKKKESMGICFIGTRNFPTFLQEYLE--TEPGQFVSVVDGKVLGEHKG 232 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315 YTIGQR GLG M EP FVV D +++ + V P +L I ++W+ D Sbjct: 233 ACMYTIGQRAGLG-GMKEPWFVVDRDTSTNSIFVCPTTDHPALYRQLIMTESVHWIADPP 291 Query: 316 FEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 + V + C + + V ++ V+V + + GQ VFY D Sbjct: 292 RDLYVDQMYDCHFRFQHRMPLVKCTLTLSGNNQVWVSLAEPIRALTPGQYAVFYKGDE-- 349 Query: 375 ARVLGGGII 383 LGGG I Sbjct: 350 --CLGGGKI 356 >gi|195996679|ref|XP_002108208.1| hypothetical protein TRIADDRAFT_20051 [Trichoplax adhaerens] gi|190588984|gb|EDV29006.1| hypothetical protein TRIADDRAFT_20051 [Trichoplax adhaerens] Length = 369 Score = 170 bits (430), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 110/371 (29%), Positives = 194/371 (52%), Gaps = 23/371 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + VAMSGGVDS++ A LL++ G++V+G+ ++ ++ ++ G C +D+ D + C+ Sbjct: 8 IAVAMSGGVDSTIAAYLLRKQGHEVVGIFMKNWD---ITEETGICKTDEDMQDFIKSCNH 64 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVL 141 + + H ++ + + + V PF + Y G TP P + CNR +KF+ L + LG D L Sbjct: 65 LGIPHKEVNFVQDYWHHVFSPFVNGYKQGITPNPDITCNRMIKFNKLRQYCSENLGVDNL 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + + D K + I + +D +DQ+YFL + L ++ FP+G++ K V+ Sbjct: 125 ATGHYAQ----LVTDSKPKLI--QAVDEAKDQTYFLANVKKISLKNIMFPIGNLLKSEVK 178 Query: 202 DLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 +LA ++GL IA K +S +CF+ + + + E D+ ++GQ G+H+ + Sbjct: 179 NLALKIGLRKIATKKESMGVCFIGKRNFKTFISEYIEN--QEYDVNTIDGQNFGKHSNLS 236 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD-GLF 316 TIG+R +G M E +VV D N + + P +L Y+ + NW+ Sbjct: 237 LSTIGERARIG-GMSERWYVVSKDSNRKVITLAPGINHPALYCRIFYVADANWISYCAEM 295 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375 + ++ +C ++IR VP ++ +G + V+ ++S V GQ FY+ + Sbjct: 296 QLSLRKELECHIRIRHLAPLVPCLIKLQYNGFLEVNSQQSLFAVTPGQFAAFYSRN---- 351 Query: 376 RVLGGGIISGS 386 LGGG I S Sbjct: 352 ECLGGGQIVSS 362 >gi|167740138|ref|ZP_02412912.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 14] Length = 311 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 111/325 (34%), Positives = 155/325 (47%), Gaps = 22/325 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D I + Sbjct: 1 MSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVADLIGID 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 ++ +++ V F Y+AG TP P V CN +KF L LGA +ATGHY Sbjct: 58 VEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTIATGHY 117 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 R R G R + + D +DQSYFL Q QL FPLG++ K VR++A + Sbjct: 118 ARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVREIAAQ 172 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 +GL A K DS ICF+ + + D + R G + +G+ +G H G+ YT GQ Sbjct: 173 IGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAFYTFGQ 230 Query: 267 RRGLGV-----AMGEPLFVVYLD--KNSSRVIVGP-RESLEVHRIYLREINWLGDGLFED 318 R+G+G+ GEP FV D N+ V+ G L + ++W+ + Sbjct: 231 RKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG----E 286 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR 343 DG +C K R Q P R Sbjct: 287 PPADGARCGAKTRYRQADAPCAFGR 311 >gi|240047229|ref|YP_002960617.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma conjunctivae HRC/581] gi|239984801|emb|CAT04780.1| tRNA-specific 2-thiouridylase mnmA [Mycoplasma conjunctivae] Length = 370 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 118/362 (32%), Positives = 183/362 (50%), Gaps = 34/362 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 R+VV +SGGVDSSV A LLK+ G++VI V ++ ++S + KG+ C +D Sbjct: 3 RIVVGLSGGVDSSVTAYLLKQQGHEVIAVFMRNWDSTINNDIKGNDSYQDHICPQEKDWL 62 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133 DA+++ +++ + D+ + + N V Y G+TP P + CN+ +KF L+ + Sbjct: 63 DAQKIAKQLDIPIHRVDFIDEYWNEVFEDLIEKYKNGKTPNPDILCNKNIKFKHFLNYSI 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + AD +A GHY ++ + D +DQSYFL + +QL + FPLG Sbjct: 123 EKFKADFIAMGHYAKTE---------NSFLFEAKDENKDQSYFLSQLSNEQLKKVLFPLG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-I 252 D K+ VR +A E L DK DS ICF+ + ++ D ++ N + G+IV + Q I Sbjct: 174 DYTKDQVRKIAFEQNLITHDKKDSTGICFIGERRFSDFLQ--NYIPSQPGNIVDITTQKI 231 Query: 253 LGRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 +GRH G + +TIGQR+G G++ M +P FVV + + V P++ R +L N L Sbjct: 232 VGRHVGAMYFTIGQRKGFGLSGMSQPYFVVGHNLAQKILYVAPQDQ----RHWLVSNNLL 287 Query: 312 GDGL-FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG----VYVDFEKSEVGVASGQACV 366 L +A + K R Q V V ++ D+ Y DFE V GQ V Sbjct: 288 ASHLNILNANFNPNNLKAKFRYHQKAVAVQIKIIDNDQFQVYYDDFE----AVTPGQEVV 343 Query: 367 FY 368 Y Sbjct: 344 IY 345 >gi|302819257|ref|XP_002991299.1| hypothetical protein SELMODRAFT_44688 [Selaginella moellendorffii] gi|300140879|gb|EFJ07597.1| hypothetical protein SELMODRAFT_44688 [Selaginella moellendorffii] Length = 375 Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 119/382 (31%), Positives = 177/382 (46%), Gaps = 38/382 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RV V +SGGVDSSV LL G+ ++++ SC +D+ A+ VC Sbjct: 1 LRVAVLVSGGVDSSVALRLLCAAGHSCTAFYIKIWFQEDFQNFWSSCPWEEDLKYAQDVC 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + V + + + N V+ + AG TP P + CN VKF L + D Sbjct: 61 DEVGVKLEIVHLTDVYWNKVVSKCITEVRAGRTPNPDIMCNTVVKFGAFLDHIDRTKFDR 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A+GHY R YV + G R + D +DQ+YFL +Q+QL L FPLG + K V Sbjct: 121 VASGHYARVERYVDEQGTIRARLKLSKDEVKDQTYFLSQLSQEQLGFLMFPLGSLAKPEV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHN 257 R LA + L D+ DSQ ICF+ + K+ D + R G+ +E + G+ +G+H Sbjct: 181 RQLAHSLNLPNKDRKDSQGICFLGKVKFSDFISRHLGEKEGLLIEAE----TGKTMGKHK 236 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 G YTIGQRRG+ ++ G P +VV D E + +Y+ + GD Sbjct: 237 GFWFYTIGQRRGISLSHG-PWYVVAKDS-------------EKNLVYISRHYFSGDKKRR 282 Query: 318 DAVVDGFKCFVKIRSSQDPV-------PVF------VQRNDDGVYVDFEKSEVGVASGQA 364 + VD F I P+ P F V+R G V ++ +A+GQ Sbjct: 283 NFYVDNLSWFSTIPDPSCPIKCKVRHGPSFHDCELEVEREKQGARVKLLHNDQALAAGQY 342 Query: 365 CVFYTSDSNEARVLGGGIISGS 386 FY ++ LG G+I+ S Sbjct: 343 AAFYAGET----CLGSGMITES 360 >gi|239813406|ref|YP_002942316.1| tRNA-specific 2-thiouridylase MnmA [Variovorax paradoxus S110] gi|239799983|gb|ACS17050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Variovorax paradoxus S110] Length = 369 Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 125/391 (31%), Positives = 182/391 (46%), Gaps = 54/391 (13%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 R+VV +SGGVDS+V A LLK+ G++V+G+ ++ + S+ C + D DA V Sbjct: 4 QRIVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---YCSSNIDFVDAASVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + ++ +++ V F Y AG TP P V CN +KF L +LGA+ Sbjct: 61 DVLGIEIEHVNFAADYKDRVFAEFLREYKAGRTPNPDVLCNAEIKFKAFLDHAMRLGAEK 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R RL ++ R + + +D +DQSYFL Q QL FP+G++ K V Sbjct: 121 IATGHYARVRL---NETTGRHELLKGLDPSKDQSYFLHRLNQAQLSKTLFPVGELHKTEV 177 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGI 259 R +A E+GL A K DS ICF+ + + + + R I+ E G I G+ LG H G+ Sbjct: 178 RRIAEEIGLPNAKKKDSTGICFIGERPFREFLNRY---ISKEPGPIKDDRGRKLGEHQGL 234 Query: 260 INYTIGQRRGLGVAM------------GEPLFVVYLD--KNSSRVIVGPRESLEVHRIYL 305 YT+GQR+GLG+ P FV D KN+ V+ G H L Sbjct: 235 SFYTLGQRQGLGIGGVKEKGAQRGSGDHSPWFVARKDVEKNTLWVVQG-----HDHPWLL 289 Query: 306 REINWLGDGLF---EDAVVDGFKCFVKIRSSQ----------DPVPVFVQRNDDGVYVDF 352 GD + E + + R + DP F R F Sbjct: 290 SSALAAGDASWVSGEAPAPGRYGSKARYRQADAACELEEGGGDPAASFSLR--------F 341 Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGII 383 + + V GQ+ V Y + R LGGG+I Sbjct: 342 GEPQWAVTPGQSAVLYDGE----RCLGGGVI 368 >gi|302812430|ref|XP_002987902.1| hypothetical protein SELMODRAFT_44690 [Selaginella moellendorffii] gi|300144291|gb|EFJ10976.1| hypothetical protein SELMODRAFT_44690 [Selaginella moellendorffii] Length = 375 Score = 169 bits (428), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 119/382 (31%), Positives = 176/382 (46%), Gaps = 38/382 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RV V +SGGVDSSV LL G+ ++++ SC +D+ A+ VC Sbjct: 1 LRVAVLVSGGVDSSVALRLLCGAGHSCTAFYIKIWFQEDFQNFWSSCPWEEDLKYAQDVC 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + V + + + N V+ + AG TP P + CN VKF L + D Sbjct: 61 DEVGVKLEIVHLTDVYWNKVVSKCITEVRAGRTPNPDIMCNTVVKFGAFLDHIDRTKFDR 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A+GHY R YV + G R + D +DQ+YFL +Q+QL L FPLG + K V Sbjct: 121 VASGHYARVERYVDEQGTIRARLMLSKDEVKDQTYFLSQLSQEQLGFLMFPLGSLAKPEV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHN 257 R LA + L D+ DSQ ICF+ + K+ D + R G+ +E + G+ +G+H Sbjct: 181 RQLAHSLNLPNKDRKDSQGICFLGKVKFSDFISRHLGEKEGLLIEAE----TGKTMGKHK 236 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 G YTIGQRRG+ ++ G P +VV D E + +Y+ + GD Sbjct: 237 GFWFYTIGQRRGISLSHG-PWYVVAKDS-------------EKNLVYISRHYFSGDKKRR 282 Query: 318 DAVVDGFKCFVKIRSSQDPV-------PVF------VQRNDDGVYVDFEKSEVGVASGQA 364 + VD F I P+ P F +R G V S+ +A+GQ Sbjct: 283 NFYVDNLSWFSTIPDPSCPIKCKVRHGPSFHDCELEFEREKQGARVKLLHSDQALAAGQY 342 Query: 365 CVFYTSDSNEARVLGGGIISGS 386 FY ++ LG G+I+ S Sbjct: 343 AAFYAGET----CLGSGMITES 360 >gi|256820771|ref|YP_003142050.1| tRNA-specific 2-thiouridylase MnmA [Capnocytophaga ochracea DSM 7271] gi|256582354|gb|ACU93489.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Capnocytophaga ochracea DSM 7271] Length = 397 Score = 169 bits (427), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 123/405 (30%), Positives = 191/405 (47%), Gaps = 52/405 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDSSV A LLK GY+VIG+ ++ ++ + C +D DA V + Sbjct: 3 RVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVT-ISDECPWLEDSNDALLVAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + D E ++ ++ + Y G TP P V CNR +KF + + LGAD + Sbjct: 62 KLGIPFQTVDMSEPYKARIVDYMFNEYEHGRTPNPDVLCNREIKFDVFMKLALSLGADYV 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R GK R++ D +DQSYFL +Q QL FP+G+++K VR Sbjct: 122 ATGHYCRKEEIEIKGGKIYRLLSG-KDENKDQSYFLCQLSQDQLSKALFPVGELQKSEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQ------------QGKYFDVVKRINAGI---------- 239 +A+ L ADK DSQ +CFV Q K D+++ N Sbjct: 181 AIAKAQDLITADKKDSQGLCFVGKVRLPEFLQQKLQPKQGDIIEIPNDWKGYTDFDMPRT 240 Query: 240 --ALEGDIVHL---------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNS 287 E ++ +L NG+ +G H G +T GQR+GL V EPLF++ D Sbjct: 241 FETYEDELEYLSQRFVYQPENGKKVGIHQGAHYFTKGQRKGLNVGGTKEPLFIIETDIEK 300 Query: 288 SRVIVGPRESLEVHRIYLREI--------NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339 + + G + HR R +W+ + L + + + V+IR Q Sbjct: 301 NIIYTGQGHT---HRGLFRSALFIATPDEHWIREDL-ALKIYESKEFMVRIRYRQPLQKA 356 Query: 340 FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + + ++G+Y+ F + + + GQ +Y+ D ++G G+IS Sbjct: 357 VLYKVENGLYIHFSEPQSAITEGQFAAWYSGD----ELVGSGVIS 397 >gi|88812884|ref|ZP_01128128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrococcus mobilis Nb-231] gi|88789806|gb|EAR20929.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrococcus mobilis Nb-231] Length = 374 Score = 169 bits (427), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 114/371 (30%), Positives = 181/371 (48%), Gaps = 27/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R +V +SGGVDS+V A LL G+ + G+ ++ + + C A QD+ A++VC Sbjct: 6 RYIVGLSGGVDSAVAALLLLEQGHAIQGLFMRNWEDDDTAT---YCSAEQDLAYAKQVCA 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +V ++ +R V Y G TP P + CN+ +KF ++ ++LG D + Sbjct: 63 QLDIPLHVANFAHEYRAEVFDHCLREYRRGHTPNPDILCNQRIKFHAFINYAQRLGTDHI 122 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R+ + G + + D ++DQSYFL+ Q+QL FPLG+ K +VR Sbjct: 123 ATGHYARN---IERHGTYH--LFKAKDADKDQSYFLYTLGQRQLARATFPLGEHAKSTVR 177 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA + G D D+ DS ICF+ + + + R G I G ++GRH G+ Sbjct: 178 ALAEQAGFDNFDRKDSTGICFIGERAFRPFLSRYIQ--PTPGPIETPEGVVVGRHQGVSF 235 Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YT+GQR+GL + G+P +VV D ++R+IV L + E+ W+ Sbjct: 236 YTLGQRQGLEIGGRAGRSGKPWYVVGKDTPANRLIVAQGHDHPLLMSVGLEATELCWVAG 295 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDS 372 +CF K R Q V+ D F++ + V GQ+ VFY + Sbjct: 296 ----RPPSTPLRCFAKTRYRQPSQSCVVEAITADCARTVFDQPQRAVVPGQSVVFYCDEE 351 Query: 373 NEARVLGGGII 383 +GGG+I Sbjct: 352 ----CIGGGVI 358 >gi|149372147|ref|ZP_01891417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [unidentified eubacterium SCB49] gi|149354914|gb|EDM43476.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [unidentified eubacterium SCB49] Length = 418 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 129/409 (31%), Positives = 194/409 (47%), Gaps = 53/409 (12%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K RVVV +SGGVDSSV A LLK GY+VIG+ ++ ++ + C D DA Sbjct: 20 KKKRVVVGLSGGVDSSVTAYLLKEQGYEVIGLFMKNWHDDSVT-ISDECPWLDDSNDAML 78 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V +++ D ++ ++ Y G TP P V CNR +KF L + +LGA Sbjct: 79 VAQALDIPFQTVDLSAEYKERIVDYMFREYKMGRTPNPDVLCNREIKFDVFLKIALELGA 138 Query: 139 DVLATGHYIRSRLY--VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 D +ATGHY R + DGK + D +DQSYFL +Q+QL FP+G++ Sbjct: 139 DFVATGHYCRKGISQETTADGKPIYQLLSGKDSNKDQSYFLCQLSQEQLSKTLFPIGELL 198 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-------- 248 K VR +A L A+K DSQ +CF+ + + + +++ A EG IV + Sbjct: 199 KPEVRKIAAAQNLITAEKRDSQGLCFIGKVRLPEFLQQQLA--PKEGVIVEIPADSEVYQ 256 Query: 249 -------------------------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY 282 +G+ +G H G +T GQR+GL V E LFV+ Sbjct: 257 KKDVSFSSETEALKSLSSKQTYSVSDGKKVGTHQGAHYFTKGQRKGLAVGGTKEALFVID 316 Query: 283 LDKNSSRVIVGPRESLE-VHR----IYLREINWLGDGLFEDAVVDGFKCFV--KIRSSQD 335 D + V G ++ ++R I EI+W+ L A+ G K V +IR Q Sbjct: 317 TDVKENVVYTGQGKTHPGLYRRGLFIQADEIHWVRQDL---AIEIGEKMEVEARIRYRQP 373 Query: 336 PVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + R +DG+YV FE ++ +A GQ +Y ++ ++G G+IS Sbjct: 374 LEKATLHRVEDGLYVIFENAQSAIAEGQFAAWYKNE----ELIGSGVIS 418 >gi|203284580|ref|YP_002222320.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia duttonii Ly] gi|229486337|sp|B5RMM8|MNMA_BORDL RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|201084023|gb|ACH93614.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia duttonii Ly] Length = 354 Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 113/374 (30%), Positives = 185/374 (49%), Gaps = 36/374 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVT-LQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ + +SGGVDSSV + + GY I L+++ + S G C +D+ V Sbjct: 1 MKIAILLSGGVDSSVALYTMIQKGYKNIKCYYLKIWLEDELS-YIGECPWKEDITYVDSV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C NV + + + +E + N V+ G TP P + CN+ +KF + D Sbjct: 60 CKKFNVPYEIINLQEEYYNRVVTYAIEELKMGNTPSPDIFCNQRIKFGAFFEKINE-KYD 118 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ TGHY + ++ + + D +DQSYFL +++Q+ L FPLGD+ K Sbjct: 119 LIVTGHYAKI-----ENKNNSYTLKQAKDKIKDQSYFLSHLSKKQISKLHFPLGDLLKSE 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258 +R +A E+ L ++ DSQ ICF+ + KY + +K + G L+G+I+ G+ILG HNG Sbjct: 174 IRQIAHEIDLPNKNRKDSQGICFLGKIKYNEFIKY-HLG-ELKGNIIEQETGKILGTHNG 231 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLD--------KNSSRVIVGPRESLEVHRIYLREINW 310 +TIGQR+G+ ++ G P FV D NS+ + +E VH+ NW Sbjct: 232 YWFFTIGQRKGIKLSHG-PWFVTEKDIQNNIIYISNSTNYLKQGKEQFLVHK-----TNW 285 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + L D + KIR + + ++ D+ + V+ E+ + G++ GQ C+FY Sbjct: 286 INKPLKNDNLS------AKIRHGEKKIKCKIETLKDEIIRVNLEEKDYGISPGQFCIFYK 339 Query: 370 SDSNEARVLGGGII 383 D LGG I Sbjct: 340 ED----ECLGGAKI 349 >gi|261749175|ref|YP_003256860.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497267|gb|ACX83717.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 394 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 123/402 (30%), Positives = 201/402 (50%), Gaps = 51/402 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDSSV A LLK+ GY+VIG+ + ++ ++ C +D DA V Sbjct: 5 RVVVGLSGGVDSSVAALLLKKQGYEVIGLFMHNWDDSVFNQ----CTWKEDSIDALLVAK 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +N+ V + ++ + ++I Y +G+TP P + CNR +KF+ L + LGAD + Sbjct: 61 DLNIPFQVVEMKKEYEESIINYMFDGYRSGKTPNPDILCNREIKFNVFLKKSIDLGADFI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+ + + ++ R++ D +DQSYFL TQ QL FPLG + K VR Sbjct: 121 ATGHYVNKKKIIKNNKIIYRLLVGK-DSNKDQSYFLCQLTQYQLKKSLFPLGSLTKNQVR 179 Query: 202 DLAREMGLDIADKSDSQDICFV--------QQGKYFDVVKRI--------------NAGI 239 +A + GL A K DSQ +CFV Q K F I + + Sbjct: 180 KIAEKNGLCNAYKKDSQGLCFVGKIQLSRFLQKKIFPKKGEIVMIDSNALMYHPKKKSFL 239 Query: 240 ALEGDIVHL---------NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSR 289 + E ++ L +G+++G H G +T GQR+G+ + + LFV+ D + Sbjct: 240 SKEEELFFLSKRKKYQKSDGKVIGYHQGAQFFTKGQRKGISIGGYKKALFVIETDIKENI 299 Query: 290 VIVG---PRESLEVHRIYLRE--INWLGDGLFEDAVVDGFK--CFVKIRSSQDPVPVFVQ 342 V G L ++++E I+W+ + + A+++G K F +IR Q + Sbjct: 300 VYTGMGKNHPGLYKKSLFIQEKDIHWIREDI---ALLNGEKMEVFCRIRYRQPLQKALLY 356 Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + +G++++FE + + GQ V+Y + ++G GIIS Sbjct: 357 KIKNGMFIEFEILQCAITEGQFAVWYL----DKELIGSGIIS 394 >gi|86140336|ref|ZP_01058895.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Leeuwenhoekiella blandensis MED217] gi|85832278|gb|EAQ50727.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Leeuwenhoekiella blandensis MED217] Length = 399 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 126/411 (30%), Positives = 192/411 (46%), Gaps = 64/411 (15%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV +SGGVDSSV A LLK GY+VIG+ ++ ++ + C D DA V + Sbjct: 4 VVVGLSGGVDSSVSAYLLKEAGYNVIGLFMKNWHDDSVTISD-ECPWLDDSNDAMLVAEK 62 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + D E+++ ++ Y G TP P V CNR +KF + + LGAD +A Sbjct: 63 LGIPFQTVDLSEQYKERIVDYMFWEYEMGRTPNPDVLCNREIKFDVFMKIALDLGADYVA 122 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + R DGK + D +DQSYFL +Q+QL FP+G ++K VR Sbjct: 123 TGHYCQ-RGETEIDGKPVYQLLAGADANKDQSYFLCQLSQEQLAKTLFPIGHLQKSEVRK 181 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVK---RINAGIALE----------GDIVHLN 249 +A+ L A+K DSQ +CF+ + + D ++ + G+ +E D N Sbjct: 182 IAKAQDLVTAEKKDSQGLCFIGKVRLPDFLQQKLKPKEGVIVEIPAERAQEKINDFQEAN 241 Query: 250 ----------------------GQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKN 286 G+++G+H G +T GQR+GL V EPLFV+ D Sbjct: 242 DSDVAVTDVAVLAKKPKYSIAEGKVVGKHQGAHYFTKGQRKGLAVGGTPEPLFVIDTDVE 301 Query: 287 SSRVIVGP--------RESL-----EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSS 333 + + G R +L EVH Y+RE L +G + + +IR Sbjct: 302 ENVIYTGQGKNHPGLLRSALFVQEDEVH--YIREDLKLQEG-------EVVETKARIRYR 352 Query: 334 QDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 Q ++ + +DG++V FE + ++ GQ +Y D LG G+IS Sbjct: 353 QPLEKAWLHKVEDGLFVSFENPQSAISEGQFVAWYDGD----ECLGSGVIS 399 >gi|303247462|ref|ZP_07333734.1| tRNA methyl transferase-like protein [Desulfovibrio fructosovorans JJ] gi|302491158|gb|EFL51050.1| tRNA methyl transferase-like protein [Desulfovibrio fructosovorans JJ] Length = 346 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 114/361 (31%), Positives = 157/361 (43%), Gaps = 20/361 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + VA SGG DS + LL+++G+ V + ++ A Q C+ Sbjct: 4 LAVAASGGADSLLALGLLQKEGHGVFAIHAHFLPPDDKQQQLADAIAAQ--------CEA 55 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I V D + FR VI PF ++Y AGETP PC CNR +KF L LGAD +A Sbjct: 56 IGVPFQAIDLSDAFRARVIAPFIAAYVAGETPNPCAACNRDLKFGLLAEAAISLGADKIA 115 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY D + R D RDQSYFL Q L FPL KK + Sbjct: 116 TGHYAGLA-----DTPEGAALFRGADATRDQSYFLSLVPQSALARALFPLARRKKADNPE 170 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 + L +S+++CFV Y ++ ++ G I +G ILG H G+ + Sbjct: 171 ALAALDLAPPLPRESREVCFVPGDDYRAFLEASGVPLSGPGPIALPDGTILGAHQGLWRH 230 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLGV EPL+V+ D ++ + VGP++ L RE+N L V Sbjct: 231 TIGQRKGLGVGWREPLYVLAKDAAANTLRVGPKQDLLAASCRAREVNVLVPPRDWPETVL 290 Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGI 382 G C+ D + + FE GQ Y + RVL GG+ Sbjct: 291 GQTCYRMAPRPA----RAAIAADGSLDIVFEAPLPRPTPGQVATLYDA---AGRVLAGGV 343 Query: 383 I 383 I Sbjct: 344 I 344 >gi|189465036|ref|ZP_03013821.1| hypothetical protein BACINT_01380 [Bacteroides intestinalis DSM 17393] gi|189437310|gb|EDV06295.1| hypothetical protein BACINT_01380 [Bacteroides intestinalis DSM 17393] Length = 350 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 117/356 (32%), Positives = 174/356 (48%), Gaps = 27/356 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV++ MSGG DSSV A LL+ GY+V GVT + Y+S + + DAR + Sbjct: 6 RVLLGMSGGTDSSVAAMLLQEAGYEVTGVTFRFYDSEGFE---------ESLDDARTLAS 56 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +N+ H ++D E FR +I F Y + TP+PC CN +K+ L + ++G + Sbjct: 57 RLNIPHIIYDARELFRERIIRYFIGEYLSARTPVPCTLCNNELKWPLLAKIADEMGIYWI 116 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 +TGHY+R V D + D ++DQ++FL+ Q L + P+GD K+ VR Sbjct: 117 STGHYVRK---VFQDN--HYFIAPAADRDKDQTFFLWGLKQDILERMILPMGDWTKDEVR 171 Query: 202 DLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDIVHLNGQILGRHNG 258 A G + A K DS +CF Y ++R L +G + +G LG H G Sbjct: 172 TYAAGRGFERAATKKDSLGVCFCPM-DYRSFLQREVPQELLPGKGRFIDESGTFLGWHKG 230 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 YTIGQRRGLG+ M FV + K S+ VI+ P SL + L++ N D Sbjct: 231 YPFYTIGQRRGLGIHMNRAAFVKEICKASNEVILAPLASLYKTEMLLKDWN------IVD 284 Query: 319 A--VVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSD 371 A +++ VKIR + V ++ ++V + +ASGQA FY D Sbjct: 285 ASRLLNSPNVIVKIRYRKQANYCTVGITAENLLHVQLHELLESIASGQAAAFYDED 340 >gi|256826638|ref|YP_003150597.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cryptobacterium curtum DSM 15641] gi|256582781|gb|ACU93915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cryptobacterium curtum DSM 15641] Length = 394 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 120/367 (32%), Positives = 172/367 (46%), Gaps = 28/367 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V +SGGVDSSV AALL G+DV G ++ + R C D+ DA+RV Sbjct: 50 RVLVGLSGGVDSSVCAALLVETGWDVCGAYMKNWTMDVPGMR---CPWADDLADAKRVAV 106 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + V+D++E ++ V+ Y AG TP P V CN+ VKF + G D + Sbjct: 107 RLGIDFRVYDFQEAYKREVVDYLVDEYRAGRTPNPDVMCNQQVKFGLFFDAAQDDGFDYI 166 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R+ D R + R D +DQ+YFL+ + + FPLG + K VR Sbjct: 167 ATGHYARA----SHDPVR---LLRAADTHKDQTYFLYRMSSDAVAHTIFPLGGLLKTQVR 219 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVK---RINAGIALEGDIVHLNGQILGRHNG 258 A + L A K+DSQ ICFV + D + G ++ D G+ +G H+G Sbjct: 220 AAAEQRNLSTAHKADSQGICFVGEAGICDFLSLYVHPQPGPIIDDD----TGETVGYHDG 275 Query: 259 IINYTIGQRRGLGVAMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 I +TIGQR GLG+ G VV +D N V GP ++ + L + W+ D Sbjct: 276 AIFFTIGQRHGLGIGGGRRYRVVRKDMDHNILYVHDGPLAPVQDSLLELDRVRWIADVPP 335 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 ++ C V+ + + + V E VASGQ+ V Y Sbjct: 336 QEGA-----CEVRTHHGEKLLAATLLATATTATVQLEADHDAVASGQSVVIYRGQE---- 386 Query: 377 VLGGGII 383 LGGGI+ Sbjct: 387 CLGGGIV 393 >gi|255010205|ref|ZP_05282331.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Bacteroides fragilis 3_1_12] Length = 353 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 115/372 (30%), Positives = 181/372 (48%), Gaps = 38/372 (10%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGG DSSV A LL GY+V GVT + Y +++ + DAR + + + Sbjct: 1 MSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNDSTEY---------LEDARALATRLGIE 51 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 H +D E FR ++ F Y AG TP+PC CN +K+ L + ++G LATGHY Sbjct: 52 HITYDAREIFRKKIVDYFIDEYMAGHTPVPCTLCNNWLKWPLLAKIADEMGIFYLATGHY 111 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 +R + G + D ++DQS+FL+ Q L + P+G+M K R A Sbjct: 112 VRKKWMDGS-----YYITLAADPDKDQSFFLWGLKQDILQRMLLPMGEMTKPEARAYAAG 166 Query: 207 MGLD-IADKSDSQDICFVQQGKYFDVVKR--INAG------IALE---GDIVHLNGQILG 254 G + ++ K DS +CF Y +K+ +AG I E G + +G + Sbjct: 167 RGFEKVSKKKDSIGVCFCPL-DYRSFLKKHLCDAGGDRSNKIIREVGKGRFLDESGNFIA 225 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H G YTIGQRRGLG+ + +FV + ++ VI+ P +SLE ++L++ N Sbjct: 226 WHEGYPFYTIGQRRGLGIQLNRAVFVKEIHPETNEVILAPLKSLEKSEMWLKDWN----- 280 Query: 315 LFEDAVVDGF-KCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 + ++ + G+ V+IR + V +G +++ + +A GQA FY Sbjct: 281 IINESRLLGYDDIIVRIRYRKQENHCSVTITPEGLLHIQLHEPLSAIAEGQAAAFY---- 336 Query: 373 NEARVLGGGIIS 384 + +LGGGII+ Sbjct: 337 KDGLLLGGGIIT 348 >gi|15829029|ref|NP_326389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma pulmonis UAB CTIP] gi|24638329|sp|Q98Q11|MNMA_MYCPU RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|14089973|emb|CAC13731.1| TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE [Mycoplasma pulmonis] Length = 371 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 122/376 (32%), Positives = 188/376 (50%), Gaps = 35/376 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-------KASKRKGSCCAGQDVY 74 ++V+ +SGGVDSSV A LLK+ G++VIG+ ++ ++S +S + C QD Sbjct: 3 KIVIGLSGGVDSSVAAYLLKQQGHEVIGLFMRNWDSLVNSDILGNSSLNQSLCPQEQDFQ 62 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VT 133 DA RV I + Y D+ + + ++V Y G TP P + CN+ +KF + Sbjct: 63 DASRVAKQIGIPIYRVDFIKEYWDSVFENLIEQYQNGFTPNPDILCNKYIKFDKFFNYAI 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + GAD +A GHY + +G + R +D +DQSYFL Q L + FPLG Sbjct: 123 EKFGADYVAMGHYA-----IAKEGN----LYRGIDQSKDQSYFLTQVRSQVLEKVIFPLG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QI 252 +M+K VR +A+E L A+K DS ICF+ + K+ D ++ N G IV + +I Sbjct: 174 NMEKSEVRRIAQEANLYTANKKDSTGICFIGERKFTDFLQ--NYIPTQPGTIVDITTKKI 231 Query: 253 LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 +G H G + YT+GQR+GL + M EP FVV D +V V P ++ L + ++ + + Sbjct: 232 VGNHIGAMYYTLGQRKGLNLGGMKEPYFVVGHDLEKKQVFVAPASEKKWLTSNWLFAQNL 291 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVF 367 N L + F + K R Q V V V+ +D + V + + V GQ Sbjct: 292 N-LNNHDFNPENLSA-----KFRYRQKDVRVKVEFLENDQIKVYYPEGFEAVTPGQQIAL 345 Query: 368 YTSDSNEARVLGGGII 383 Y + LGG +I Sbjct: 346 YDGQ----KCLGGAVI 357 >gi|31544324|ref|NP_852902.1| multifunctional FAD synthetase/riboflavin kinase/tRNA-specific 2-thiouridylase [Mycoplasma gallisepticum str. R(low)] gi|81572856|sp|Q7NBZ0|MNMA_MYCGA RecName: Full=Trifunctional protein ribF/mnmA; Includes: RecName: Full=FMN adenylyltransferase; AltName: Full=FAD pyrophosphorylase; AltName: Full=FAD synthase; Includes: RecName: Full=Riboflavin kinase; AltName: Full=Flavokinase; Includes: RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|31541168|gb|AAP56470.1| Trifunctional protein RibF/TrmU (FAD synthetase, Riboflavin kinase, tRNA-specific 2-thiouridylase) [Mycoplasma gallisepticum str. R(low)] gi|284930363|gb|ADC30302.1| Trifunctional protein RibF/TrmU (FAD synthetase, Riboflavin kinase, tRNA-specific 2-thiouridylase) [Mycoplasma gallisepticum str. R(high)] Length = 657 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 126/380 (33%), Positives = 199/380 (52%), Gaps = 31/380 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--------SRKASKRKGSCCAGQDV 73 +VVVA+SGGVDS+V A LL++ GYDV+ +Q ++ S A + C A QD Sbjct: 288 KVVVALSGGVDSAVCAYLLQQQGYDVVAAFMQNWDKDLNFELLSDHADDQIQGCDAKQDY 347 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D +++C+ + + Y F++ E++ N V + Y G TP P V CN+ KF ++ Sbjct: 348 EDTQKLCEQLKIKLYHFNFVEQYWNDVFLKVLEDYKKGLTPNPDVLCNQFGKFGWFINAL 407 Query: 134 R-QLGADV-LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 R Q G D+ +A GHY ++L DD + D +DQ+YFL ++QL ++ FP Sbjct: 408 RKQFGDDIKIAFGHY--AKLITKDD---EVFLVHTKDHNKDQTYFLTMLKKEQLKNIIFP 462 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-G 250 L ++ K +VR++A++ L +A+K DS ICF+ + + + N +G I+ ++ Sbjct: 463 LSELDKPTVREIAKQANLYVANKKDSTGICFIGERNFKQFLS--NYLAIKKGPIILIDEN 520 Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRES----LEVHRIYL 305 + +G H+G+ YTIGQ R L V E +FV D N++ + V S L L Sbjct: 521 KKIGEHDGLYFYTIGQSRRLHVGGTKEKIFVCDKDYNNNTLYVCYESSKDQYLSSVSCEL 580 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQA 364 + NWL D +D + + K +++ R Q V +DD V V + K ++GV GQ Sbjct: 581 EKFNWLIDT--KDQLFNK-KLWIRFRHRQKLQECEIVSYHDDKVIVKYTK-QIGVTPGQY 636 Query: 365 CVFYTSDSNEARVLGGGIIS 384 V Y D N V+GGG I+ Sbjct: 637 GVIY--DQN-LWVVGGGKIT 653 >gi|212704994|ref|ZP_03313122.1| hypothetical protein DESPIG_03062 [Desulfovibrio piger ATCC 29098] gi|212671546|gb|EEB32029.1| hypothetical protein DESPIG_03062 [Desulfovibrio piger ATCC 29098] Length = 387 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 124/397 (31%), Positives = 180/397 (45%), Gaps = 51/397 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG----------- 70 ++ VA+SGGVDS L+ G+DV+ + L+ AS G C A Sbjct: 3 QLAVAVSGGVDSLCALLRLREQGHDVLALH-GLFLPDAASS--GPCPAPEGPRLLTAAEA 59 Query: 71 ----------QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 Q V + C + + +V D F V+ PF +YA G TP PC C Sbjct: 60 LAAPLPPASRQAVEGLQTACGQLGIPLHVADMRAVFDREVVTPFVRAYARGRTPNPCALC 119 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 NR +KF LL LGAD +ATGHY +RL G G ++ DL +DQSYFL Sbjct: 120 NRAIKFGALLDTALSLGADRIATGHY--ARLLDGPSGP---MLAAADDLAKDQSYFLSLV 174 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGK--YFDVVKR--IN 236 ++L FPL K + +E GL + +SQ+ICF+ G+ Y ++R Sbjct: 175 PLERLRRAIFPLARQDKATSIAQVKEAGLAVPVPQESQEICFIPAGEDAYRAFLERRWQA 234 Query: 237 AGIALEGD---IVHLNG-------QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKN 286 G++L G ++ G + L RH G+ YT GQRRGLG+A EPL+V+ Sbjct: 235 EGLSLPGSGPVLLEEAGSDGRPVLRPLARHEGLWRYTEGQRRGLGIAHSEPLYVLRKQGE 294 Query: 287 SSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD 346 + ++VG R L +H +N L ++ ++R Q P P V+ DD Sbjct: 295 DNTLVVGGRARLGMHGCLTGPVNLLCPPEQWPDIL-----LARLRHRQRPTPAQVELTDD 349 Query: 347 GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 G+ V + + A GQ Y + RVL G ++ Sbjct: 350 GLRVTLAEPQFPSAPGQVAAIY---DEQGRVLAGALV 383 >gi|73969262|ref|XP_538325.2| PREDICTED: similar to tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1 isoform a [Canis familiaris] Length = 425 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 127/395 (32%), Positives = 190/395 (48%), Gaps = 50/395 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV A+SGGVDS+V A LL+R GY V GV ++ ++S G C A +D DA RVC Sbjct: 6 HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDS---LDEHGVCTADRDCEDAYRVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140 +++ + Y + + N V F S Y G TP P + CN+ +KFS LGAD Sbjct: 63 ILDIPFHQVSYVKEYWNDVFSDFLSEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122 Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQ 182 +ATGHY R+ L + +++ I + + D +DQ++FL +Q Sbjct: 123 VATGHYARTSLEDEEVFQQKHIRRPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQ 182 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV-----KRIN 236 L FPLG + K+ V+ +A E L + K +S ICFV + + + + R Sbjct: 183 DALRRTLFPLGGLTKDFVKKIAAENRLHHVLQKKESMGICFVGKRNFENFILQYLQPRPG 242 Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR- 295 I++E + ++LG H G YT+GQR +G + EP +VV D V V PR Sbjct: 243 KFISIE------DNKVLGTHKGWFLYTLGQRAKIG-GLREPWYVVEKDGTKGDVFVAPRT 295 Query: 296 ESLEVHRIYLR--EINWLGD----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-V 348 + ++R LR ++W+ + L D +++ C + R VP + N DG V Sbjct: 296 DHPALYRDLLRTNRVHWIAEEPPAALVRDKMME---CHFRFRHQMALVPCVLTLNQDGTV 352 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 +V K+ +A GQ VFY D LG G I Sbjct: 353 WVTAVKAVRALALGQFAVFYKGDE----CLGSGKI 383 >gi|300113744|ref|YP_003760319.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosococcus watsonii C-113] gi|299539681|gb|ADJ27998.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosococcus watsonii C-113] Length = 391 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 119/373 (31%), Positives = 187/373 (50%), Gaps = 29/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV A L++ GY + G+ ++ + + C QD DA+ V Sbjct: 29 KVVVGLSGGVDSSVAALRLQQQGYPISGLFMKNWVD---FADESECTVAQDKKDAQAVTS 85 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + +S + ++ + + V F Y G TP P + CNR +KF L LG ++ Sbjct: 86 LLGISFHEANFAIEYWDRVFRYFLEEYRLGRTPNPDILCNREIKFKTFLDHALALGNTLI 145 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R D + R + + D +DQSYFL+ Q+QL FPLG+++K VR Sbjct: 146 ATGHYARI-----DQQEGRYRLLKGRDKNKDQSYFLYTLGQKQLSHTLFPLGELEKPQVR 200 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + L K DS ICF+ + ++ + + R A G++ N + +G+H+G++ Sbjct: 201 RIAIQARLPNHSKKDSTGICFIGERRFKEFLSRYLP--AQPGEMCTPNKERIGQHDGLMY 258 Query: 262 YTIGQRRGLGV-----AMGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLR--EINWLG 312 YT+GQRRGLG+ + G P FVV L +N V G R+ + + L +++W+ Sbjct: 259 YTLGQRRGLGIGGRKNSNGAPWFVVGKNLPQNILYVAQG-RDHPWLRSLALEANQLHWVA 317 Query: 313 DGLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + ++ + C KIR Q D + + V F+ + GQA VFY +D Sbjct: 318 G--YPPSLP--YSCTAKIRYRQADQHCTLTAITNGYIKVIFDVPQYAATPGQAIVFYQND 373 Query: 372 SNEARVLGGGIIS 384 LGGG I+ Sbjct: 374 E----CLGGGTIT 382 >gi|195652181|gb|ACG45558.1| tRNA methyltransferase [Zea mays] Length = 486 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 126/374 (33%), Positives = 180/374 (48%), Gaps = 24/374 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RV V +SGGVDSSV LL G+ L+++ C +D+ A+ VC Sbjct: 75 LRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIWFQEDFRNFWSECPWDEDLKYAQAVC 134 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I+V V + + N V+ + Y G TP P V CN +KF L LG D Sbjct: 135 DKIDVPLEVVHLSDEYWNHVVSHMINEYRCGRTPNPDVLCNTRIKFGSFLEAIENLGFDY 194 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A+GHY ++ + ++ D +DQ+YFL +Q QL L FPLG + K+ V Sbjct: 195 IASGHYAHVVHPSAENTEAPSVLQLSKDKIKDQTYFLSHLSQSQLRRLLFPLGCITKDEV 254 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHN 257 R LA +M L + DSQ ICF+ + K+ + V+R GI LE + +G LG H Sbjct: 255 RRLATQMALPNQGRKDSQGICFLGKVKFSEFVERHIGEKEGIILEAE----SGDYLGIHR 310 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLR--EINWLGDG 314 G YTIGQR+GL + G P +VV D ++ V V SL+ R R +NW + Sbjct: 311 GFWFYTIGQRQGLRLP-GGPWYVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFDN- 368 Query: 315 LFEDAVVDGFKCFVKIRSSQD-----PVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 F + KC K+R S + V + N D + V + + G+A+GQ FY+ Sbjct: 369 -FGPGNNEQLKC--KVRHSPEFHDCTLVKERSEENGDALVVHLAEDDQGLAAGQFAAFYS 425 Query: 370 SDSNEARVLGGGII 383 E LG GII Sbjct: 426 ----ENVCLGSGII 435 >gi|212721228|ref|NP_001131207.1| hypothetical protein LOC100192515 [Zea mays] gi|194690872|gb|ACF79520.1| unknown [Zea mays] Length = 486 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 129/377 (34%), Positives = 181/377 (48%), Gaps = 30/377 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RV V +SGGVDSSV LL G+ L+++ C +D+ A+ VC Sbjct: 75 LRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIWFQEDFRNFWSECPWDEDLKYAQAVC 134 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I+V V + + N V+ + Y G TP P V CN +KF L LG D Sbjct: 135 DKIDVPLEVVHLSDEYWNHVVSHMINEYRCGRTPNPDVLCNTRIKFGSFLEAIENLGFDY 194 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A+GHY ++ + ++ D +DQ+YFL +Q QL L FPLG + K+ V Sbjct: 195 IASGHYAHVVHPSAENTEAPSVLQLSKDKIKDQTYFLSHLSQSQLRRLLFPLGCITKDEV 254 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHN 257 R LA +MGL + DSQ ICF+ + K+ + V+R GI LE + +G LG H Sbjct: 255 RRLATQMGLPNQGRKDSQGICFLGKVKFSEFVERHIGEKEGIILEAE----SGDYLGIHR 310 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLR--EINWL--- 311 G YTIGQR+GL + G P +VV D ++ V V SL+ R R +NW Sbjct: 311 GFWFYTIGQRQGLRLP-GGPWYVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFDNC 369 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQD-----PVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 G G E KC K+R S + V + N D + V + + G+A+GQ Sbjct: 370 GPGNNEQ-----LKC--KVRHSPEFHDCTLVKERSEENGDALVVHLAEDDQGLAAGQFAA 422 Query: 367 FYTSDSNEARVLGGGII 383 FY+ E LG GII Sbjct: 423 FYS----ENVCLGSGII 435 >gi|319944511|ref|ZP_08018782.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lautropia mirabilis ATCC 51599] gi|319742224|gb|EFV94640.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lautropia mirabilis ATCC 51599] Length = 393 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 126/392 (32%), Positives = 185/392 (47%), Gaps = 44/392 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++VV +SGGVDS+V A LLK G+ V G+ ++ + S+ C + QD DA V D Sbjct: 12 QIVVGLSGGVDSAVSAWLLKEAGWQVTGLFMKNWEDDDDSEY---CSSRQDWLDAASVAD 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ +R V F +Y AG TP P + CN +KF L LGA+ + Sbjct: 69 VIGIDLEAVNFAADYRERVFSLFLQAYEAGFTPNPDILCNAEIKFKAFLDHALALGAERI 128 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +R +G DG + + R D +DQSYFL Q QL FPL + K VR Sbjct: 129 ATGHYAGNR--IGPDGLAQ--LLRGADANKDQSYFLHRLNQYQLSRAVFPLAGITKPEVR 184 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A +GL A K DS ICF+ + + + + R G +V G +G H G+ Sbjct: 185 EIAARIGLPNATKKDSTGICFIGERPFREFLSRYLP--TKPGPMVDDRGVQVGEHVGLSF 242 Query: 262 YTIGQRRGLGV------AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 YT+GQR+G+G+ A G P FV D S+ +IV L R+ R+++W+G Sbjct: 243 YTLGQRKGIGIGGRRDNADGTPWFVAGKDLASNTLIVVRGHDHPLLLTQRLAARDVHWIG 302 Query: 313 DGLFEDAVVDGFKC---------FVKIRSSQ-----DPVP-------VFVQRNDDGVYVD 351 E G KC +V+ S + D P ++ + V Sbjct: 303 AAP-EPGHPYGVKCRYRQQDAEGWVQSSSPEEGAATDATPAGASAAVTGAEKPPSRIEVG 361 Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 F + + V GQ+ VFY + LGG +I Sbjct: 362 FAEPQWAVTPGQSVVFYDGEV----CLGGAVI 389 >gi|217077941|ref|YP_002335659.1| tRNA methyl transferase [Thermosipho africanus TCF52B] gi|217037796|gb|ACJ76318.1| tRNA methyl transferase [Thermosipho africanus TCF52B] Length = 321 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 105/334 (31%), Positives = 177/334 (52%), Gaps = 22/334 (6%) Query: 53 QLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGE 112 ++Y ++K + + CC+ D YDA+++ + V V E+ FR VI F S Y G+ Sbjct: 7 EIYLTKKITHK--VCCSPSDTYDAKKIAEKFGVDFKVVHLEDDFREMVINYFVSEYKRGK 64 Query: 113 TPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD 172 TP PC CN +KF L+ + G D +A+GHY + +GK + + E+D Sbjct: 65 TPNPCFFCNDWIKFGVLMEKMFEDGMDYVASGHYA-----IIKNGK----LYKAKSYEKD 115 Query: 173 QSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV 232 QSYFL + +++L + P G+ K+ +R++A ++G+ + +K DSQD+CF+ G + + Sbjct: 116 QSYFLASIKKEKLKKIILPNGEYTKQQIREIAEKIGIHVHNKVDSQDLCFIPDGNISEFL 175 Query: 233 KRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV 292 + N EG I+ G I+G H G+ NYTIGQR+ +GVA G L+V+ D ++ +IV Sbjct: 176 RENNMEFK-EGLIIDTEGNIIGTHKGLANYTIGQRK-IGVATGRRLYVIKKDFKNNILIV 233 Query: 293 GPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF 352 G +ES + + + N+L + V F+ +VK+R V ++ +Y++ Sbjct: 234 GDKESAFSTKFTVLKPNFLQN------VSKDFEGYVKVRKKFKEVRCKAHFENERLYIET 287 Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 ++ + GQ V Y D + V+ GII G Sbjct: 288 QEPIFAITPGQIAVVYGFDDS---VIVSGIIEGE 318 >gi|203288114|ref|YP_002223129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia recurrentis A1] gi|229486333|sp|B5RQ24|MNMA_BORRA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|201085334|gb|ACH94908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia recurrentis A1] Length = 354 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 112/374 (29%), Positives = 185/374 (49%), Gaps = 36/374 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVT-LQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ + +SGGVDSSV + + GY I L+++ + S G C +D+ V Sbjct: 1 MKIAILLSGGVDSSVALYTMIQKGYKNIKCYYLKIWLEDELS-YIGECPWKEDITYVDSV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C NV + + + +E + N V+ G TP P + CN+ +KF + D Sbjct: 60 CKKFNVPYKIINLQEEYYNRVVTYAIEELKMGNTPSPDIFCNQRIKFGAFFEKINE-KYD 118 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ TGHY + ++ + + D +DQSYFL +++Q+ L FPLGD+ K Sbjct: 119 LIVTGHYAKI-----ENKNNSYTLKQAKDKIKDQSYFLSHLSKKQISKLHFPLGDLLKSE 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258 +R +A E+ L ++ DSQ ICF+ + KY + +K + G L+G+I+ G+ILG HNG Sbjct: 174 IRQIAHEIDLPNKNRKDSQGICFLGKIKYNEFIK-YHLG-ELKGNIIEQETGKILGTHNG 231 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLD--------KNSSRVIVGPRESLEVHRIYLREINW 310 +TIGQR+G+ ++ G P FV D NS+ + +E VH+ NW Sbjct: 232 YWFFTIGQRKGIKLSHG-PWFVTEKDIQNNIIYISNSTNYLKQGKEQFLVHK-----TNW 285 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + L + + KIR + + ++ D+ + V+ E+ + G++ GQ C+FY Sbjct: 286 INKPLKNNNLS------AKIRHGEKKIKCKIETLKDEIIRVNLEEKDYGISPGQFCIFYK 339 Query: 370 SDSNEARVLGGGII 383 D LGG I Sbjct: 340 ED----ECLGGAKI 349 >gi|301774935|ref|XP_002922890.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like [Ailuropoda melanoleuca] Length = 477 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 126/394 (31%), Positives = 190/394 (48%), Gaps = 50/394 (12%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVVA+SGGVDS+V A LL+R GY V GV ++ ++S G C A +D DA RVC Sbjct: 65 VVVALSGGVDSAVAALLLRRRGYQVTGVFMKNWDS---LDEHGVCIADRDCEDAYRVCQI 121 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVL 141 +++ + Y + + N V F S Y G TP P + CN+ +KFS LGAD + Sbjct: 122 LDIPFHQVSYVKEYWNDVFSDFLSEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADAV 181 Query: 142 ATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQQ 183 ATGHY R+ L + +++ I + + D +DQ++FL +Q Sbjct: 182 ATGHYARTSLEDEEVFQQKHIRRPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQD 241 Query: 184 QLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV-----KRINA 237 L FPLG + K+ V+ +A E L + K +S ICF+ + + + + R Sbjct: 242 ALRRTLFPLGGLTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNFENFILQYLQPRPGK 301 Query: 238 GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-E 296 I++E + ++LG H G YT+GQR + + EP +VV D V V PR + Sbjct: 302 FISIE------DSKVLGTHKGWFLYTLGQRAKIS-GLQEPWYVVEKDGTKGDVFVAPRTD 354 Query: 297 SLEVHRIYLR--EINWLGD----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VY 349 ++R LR ++W+ + L D +++ C + R VP + N DG V+ Sbjct: 355 HPALYRDLLRTSRVHWIAEEPPAALVRDKMME---CHFRFRHQMALVPCVLTLNQDGTVW 411 Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 V K+ +A GQ VFY D LG G I Sbjct: 412 VTAVKAVRALAPGQFAVFYKGDE----CLGSGKI 441 >gi|281202538|gb|EFA76740.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Polysphondylium pallidum PN500] Length = 465 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 128/381 (33%), Positives = 197/381 (51%), Gaps = 30/381 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K + V +SGGVDS+V A LLK+ G+ V V ++ ++ + G C +D DA+ Sbjct: 69 KKPEICVGLSGGVDSAVTAYLLKKQGFKVQCVYIKSWDEKD---ELGYCTGEKDYSDAQD 125 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + Y D+ + + N V F Y+ G TP P V CNR +KF+ + +GA Sbjct: 126 VANRLQLPIYHADFVKEYWNRVFNSFLEEYSQGYTPNPDVFCNREIKFNVFYEYAKSIGA 185 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ATGHY SRL D+ + R++ R +D +DQSYFL T +QL FP+GD K Sbjct: 186 DMIATGHY--SRLQYDDELESARLL-RGVDPNKDQSYFLCMTEGRQLYRSLFPIGDYVKT 242 Query: 199 SVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRH 256 ++ LA ++G +I K+ S+ ICFV GK + + + I L+ G ++ Q +G+H Sbjct: 243 DIKALANQLGYTNITAKTSSRGICFV--GKR-PLDEFLGTYINLQPGAFLNPLDQQVGQH 299 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR---------ESLEVHRIYLRE 307 G I YTIGQ+ + + E V +DK+++ V V P +SL+VHRI Sbjct: 300 KGAICYTIGQKANIS-GLEERYIVYKIDKDNNCVFVCPESLSKKYLMSQSLQVHRI--NW 356 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSS----QDPVPVFVQRNDDGVY-VDFEKSEVGVASG 362 IN + + L V +C V+ RSS + + + + VY V E+ E VA G Sbjct: 357 INGIPERLLTAGVPMKIRCQVRYRSSLVNGEISLEHLAENPQESVYSVQLEQPERAVAPG 416 Query: 363 QACVFYTSDSNEARVLGGGII 383 Q Y +S+ LGG + Sbjct: 417 QILCIYEPESDVC--LGGASV 435 >gi|160883986|ref|ZP_02064989.1| hypothetical protein BACOVA_01960 [Bacteroides ovatus ATCC 8483] gi|156110716|gb|EDO12461.1| hypothetical protein BACOVA_01960 [Bacteroides ovatus ATCC 8483] Length = 378 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 115/402 (28%), Positives = 181/402 (45%), Gaps = 60/402 (14%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV++ MSGG DSSV A L GY+VIGVT + Y +++ + DAR Sbjct: 4 ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFYELNGSTEY---------LEDARN 54 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + H +D E F +I F Y AG TP+PC CN +K+ L + ++G Sbjct: 55 LAERLGIRHITYDAREIFSKQIIEYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGV 114 Query: 139 DVLATGHY-----IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +ATGHY + + Y+ D ++DQ++FL+ Q LC + P+G Sbjct: 115 FYIATGHYAQNIQLNNTFYI----------TYAADSDKDQTFFLWGLKQDILCRMLLPMG 164 Query: 194 DMKKESVRDLAREMGLD-IADKSDSQDICFV------------------------QQGKY 228 D+ K R A E G +A K DS +CF G+ Sbjct: 165 DITKVEARVWAAEHGFQKVATKKDSIGVCFCPMDYRTFLKNWLAQNNEALAEEEQMMGEN 224 Query: 229 FDVVKRINAGI--ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKN 286 +V AG+ G V G + H G YTIGQRRGLG+ + P+FV ++ Sbjct: 225 QALVGSNQAGLNKVKRGRFVDEKGDFIAWHEGYPFYTIGQRRGLGIHLNRPVFVKEINPE 284 Query: 287 SSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRND 345 + V++ +LE ++L++ N + ++ + VKIR Q+ D Sbjct: 285 KNEVVLASLSALEKTEMWLKDWNLVN----QERTLGHSDIIVKIRYRKQENHATITITPD 340 Query: 346 DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387 ++V + +A GQA FY + +LGGGII ++ Sbjct: 341 HLLHVQLHEPLTAIAPGQAAAFY----KDGLLLGGGIIVNAR 378 >gi|319791106|ref|YP_004152746.1| tRNA (5-methylaminomethyL-2-thiouridylate)-methyltransferase [Variovorax paradoxus EPS] gi|315593569|gb|ADU34635.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Variovorax paradoxus EPS] Length = 366 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 122/380 (32%), Positives = 183/380 (48%), Gaps = 35/380 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 R+VV +SGGVDS+V A LLK+ G++V+G+ ++ + S+ C + D DA V Sbjct: 4 QRIVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---YCSSNIDFIDAASVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + ++ +++ V F Y AG TP P V CN +KF L +LGA+ Sbjct: 61 DVLGIEIEHVNFAADYKDRVFAEFLREYKAGRTPNPDVLCNAEIKFKAFLDHAMRLGAEK 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R ++ R + + +D +DQSYFL Q QL FP+G++ K V Sbjct: 121 IATGHYARVRH---NEVTGRHELLKGLDPSKDQSYFLHRLNQAQLSKTLFPVGELHKTEV 177 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGI 259 R +A E+GL A K DS ICF+ + + D + R I+ E G I G+ LG H G+ Sbjct: 178 RRIAEEIGLPNAKKKDSTGICFIGERPFRDFLNRY---ISKEPGPIKDDRGRKLGEHQGL 234 Query: 260 INYTIGQRRGLGVAM------------GEPLFVVYLD--KNSSRVIVGP-RESLEVHRIY 304 YT+GQR+GLG+ P FV D KN+ V+ G L + Sbjct: 235 SFYTLGQRQGLGIGGVKEKGAQRGSGDHSPWFVARKDIEKNTLWVVQGHDHPWLLSSALN 294 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQ 363 + +W+ E + K R Q + + +G + + F + V GQ Sbjct: 295 ADDASWVSG---EAPAAGSYGS--KARYRQADAGCELSDDANGAFSLRFGAPQWAVTPGQ 349 Query: 364 ACVFYTSDSNEARVLGGGII 383 + V Y + R LGGG+I Sbjct: 350 SAVLYDGE----RCLGGGVI 365 >gi|145628472|ref|ZP_01784272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae 22.1-21] gi|144978942|gb|EDJ88628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae 22.1-21] Length = 328 Score = 167 bits (422), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 103/318 (32%), Positives = 175/318 (55%), Gaps = 29/318 (9%) Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LG 137 VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + LG Sbjct: 25 VCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLG 84 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 85 ADYIATGHYVRR---AGDNENAK--LLRGLDPNKDQSYFLYTLSHKQVGQSLFPVGEIEK 139 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR +A ++GL A K DS ICF+ + K+ D + R A G+I ++ +I+GRH+ Sbjct: 140 PIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDDEIIGRHD 197 Query: 258 GIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLRE 307 G++ +T+GQR+GLG+ A E +VV D ++ +IV PR L + + Sbjct: 198 GLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR--LFSKGLIASQ 255 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366 ++W+ + + + +C VK R Q +P ++ +D+ + V F++ + V GQ+ V Sbjct: 256 LHWVD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAV 311 Query: 367 FYTSDSNEARVLGGGIIS 384 FY ++ LGGGII+ Sbjct: 312 FYLGEA----CLGGGIIA 325 >gi|294055153|ref|YP_003548811.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Coraliomargarita akajimensis DSM 45221] gi|293614486|gb|ADE54641.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Coraliomargarita akajimensis DSM 45221] Length = 356 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 116/368 (31%), Positives = 185/368 (50%), Gaps = 23/368 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+VA+SGGVDS+V A LLK GY V G ++ + + +A C A QD+ D+R V Sbjct: 3 KVLVALSGGVDSAVAALLLKEQGYAVSGAYIRTWMNEEAPL--ADCPAQQDIEDSRAVAQ 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + + + + V+ Y G TP P + CNR +KF + G D + Sbjct: 61 HLGIDYEIVNLVNEYSEHVVNYLVDGYKRGITPNPDMMCNREMKFGIFQNYALSQGFDAM 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R + +DG + +D +DQ+YFL Q+Q+ FP+G+++K VR Sbjct: 121 ATGHYVRK--FKNEDGSFN--LLEGIDKNKDQTYFLALLKQEQIAKALFPVGELQKPRVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNGQILGRHNGII 260 +LA E L A K DSQ ICF+ ++ + + I G+IV+ G++LG+H G+ Sbjct: 177 ELAIEHQLPNAAKKDSQGICFLGD---MNINRFLEHYIEDRPGNIVNPEGKVLGQHRGLH 233 Query: 261 NYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 YT+GQRRG+GV E VV + + +IV ++ + ++ +E+ G Sbjct: 234 RYTMGQRRGIGVPSNTDNEFYVVVGFNMEQNELIVA-FDNPDSPGLFTQEVEVYGLSFVN 292 Query: 318 DAVVDGFKCFVKIR---SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 V + + K R SSQ + D V F++ + +ASGQ Y ++ Sbjct: 293 KPVTEACRLLAKPRYRDSSQ--AITYTPTGPDSAKVVFDEPQRALASGQILALYEGET-- 348 Query: 375 ARVLGGGI 382 +LGGG Sbjct: 349 --LLGGGF 354 >gi|56808669|ref|ZP_00366393.1| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Streptococcus pyogenes M49 591] Length = 299 Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 95/243 (39%), Positives = 136/243 (55%), Gaps = 9/243 (3%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V Sbjct: 12 IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 68 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 69 DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 128 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++K V Sbjct: 129 VATGHYAQ----VKRDENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEV 184 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H G++ Sbjct: 185 REIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLM 242 Query: 261 NYT 263 YT Sbjct: 243 YYT 245 >gi|77165505|ref|YP_344030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosococcus oceani ATCC 19707] gi|76883819|gb|ABA58500.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosococcus oceani ATCC 19707] Length = 391 Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 118/373 (31%), Positives = 182/373 (48%), Gaps = 29/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV A L++ GY G+ ++ + + C QD DA+ V Sbjct: 29 KVVVGLSGGVDSSVAALRLQQQGYPTSGLFMKNWVD---FADESECTVAQDREDAQAVTS 85 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + +S + ++ + + V F Y G TP P + CNR +KF L LG ++ Sbjct: 86 LLGISFHEANFAMEYWDRVFHYFLEEYRLGRTPNPDILCNREIKFKTFLDHALALGNTLI 145 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R D + R + + D +DQSYFL+ Q+QL FPLG+++K VR Sbjct: 146 ATGHYARI-----DQKEGRYRLLKGRDKNKDQSYFLYTLGQKQLSHTLFPLGELEKPQVR 200 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + L K DS ICF+ + ++ + + R A G++ + + +G+H+G++ Sbjct: 201 RIAIQARLPNHSKKDSTGICFIGERRFKEFLSRYLP--AQPGEMRTPDKEWIGQHDGLMY 258 Query: 262 YTIGQRRGLGV-----AMGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLR--EINWLG 312 YT+GQRRGLG+ + G P FVV L +N+ V G R + + L +++W+ Sbjct: 259 YTLGQRRGLGIGGRKNSNGAPWFVVGKNLPQNTLYVAQG-RHHPWLKSLILEANQLHWVA 317 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 + C KIR Q + +G + V F + GQA VFY D Sbjct: 318 G----HPPPLPYSCTAKIRYRQTDQHCTLTAIANGYIKVIFNAPQYAATPGQAIVFYQDD 373 Query: 372 SNEARVLGGGIIS 384 LGGG I+ Sbjct: 374 E----CLGGGTIT 382 >gi|254434432|ref|ZP_05047940.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosococcus oceani AFC27] gi|205822273|sp|Q3J9J6|MNMA_NITOC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|207090765|gb|EDZ68036.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosococcus oceani AFC27] Length = 367 Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 118/373 (31%), Positives = 182/373 (48%), Gaps = 29/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV A L++ GY G+ ++ + + C QD DA+ V Sbjct: 5 KVVVGLSGGVDSSVAALRLQQQGYPTSGLFMKNWVD---FADESECTVAQDREDAQAVTS 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + +S + ++ + + V F Y G TP P + CNR +KF L LG ++ Sbjct: 62 LLGISFHEANFAMEYWDRVFHYFLEEYRLGRTPNPDILCNREIKFKTFLDHALALGNTLI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R D + R + + D +DQSYFL+ Q+QL FPLG+++K VR Sbjct: 122 ATGHYARI-----DQKEGRYRLLKGRDKNKDQSYFLYTLGQKQLSHTLFPLGELEKPQVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + L K DS ICF+ + ++ + + R A G++ + + +G+H+G++ Sbjct: 177 RIAIQARLPNHSKKDSTGICFIGERRFKEFLSRYLP--AQPGEMRTPDKEWIGQHDGLMY 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVV--YLDKNSSRVIVGPRESLEVHRIYLR--EINWLG 312 YT+GQRRGLG+ + G P FVV L +N+ V G R + + L +++W+ Sbjct: 235 YTLGQRRGLGIGGRKNSNGAPWFVVGKNLPQNTLYVAQG-RHHPWLKSLILEANQLHWVA 293 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 + C KIR Q + +G + V F + GQA VFY D Sbjct: 294 G----HPPPLPYSCTAKIRYRQTDQHCTLTAIANGYIKVIFNAPQYAATPGQAIVFYQDD 349 Query: 372 SNEARVLGGGIIS 384 LGGG I+ Sbjct: 350 E----CLGGGTIT 358 >gi|253564435|ref|ZP_04841892.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 3_2_5] gi|251948211|gb|EES88493.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 3_2_5] gi|301161234|emb|CBW20772.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides fragilis 638R] Length = 364 Score = 166 bits (421), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 114/381 (29%), Positives = 185/381 (48%), Gaps = 36/381 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ RV++ MSGG DSSV A LL GY+V GVT + Y +++ + DAR Sbjct: 4 KNKRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNGSTEY---------LEDARA 54 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + H +D + F+ +I F Y +G TP+PC CN +K+ L + ++G Sbjct: 55 LAARLGIGHITYDARKVFQEQIIDYFIDEYMSGHTPVPCTLCNNQLKWPLLAKIADEMGI 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 LATGHY+R + G+ + D+++DQS+FL+ Q+ L + P+G M K Sbjct: 115 FYLATGHYVRKQWVDGN-----YYIAPAEDVDKDQSFFLWGLKQEILQRMLLPMGGMTKS 169 Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRI--------NAGIALE---GDIV 246 R A G + ++ K DS +CF Y +K+ N I + G + Sbjct: 170 EARAYAAGRGFEKVSKKKDSIGVCFCPL-DYRSFLKKCLCDESGDKNRNIYRKVERGRFL 228 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 +G + H G YTIGQRRGLG+ + +FV + ++ V++ +SLE ++L+ Sbjct: 229 DESGNFIAWHEGYPFYTIGQRRGLGIQLNRAVFVKEIHPETNEVVLASLKSLEKSEMWLK 288 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365 + N + E ++ VKIR + V +G +++ + +A GQA Sbjct: 289 DWNIVD----ESRLLGCDDVIVKIRYRKQENHCSVTITPEGLLHIRLHEPLSAIAEGQAA 344 Query: 366 VFYTSDSNEARVLGGGIISGS 386 FY + +LGGGII+ S Sbjct: 345 AFY----KDGLLLGGGIITMS 361 >gi|237709059|ref|ZP_04539540.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229456755|gb|EEO62476.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 364 Score = 166 bits (420), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 115/376 (30%), Positives = 182/376 (48%), Gaps = 40/376 (10%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGG+DSS +L+ GY+V+GVT++ ++ G DV +A+ + + + + Sbjct: 1 MSGGIDSSATCIMLQEQGYEVVGVTMRTWDVPSRFSTPGQD-EPDDVLEAKALAERLGIE 59 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 H+V D + F+ ++ F Y G TP PCV CN K L Q ++TGHY Sbjct: 60 HHVADVRKEFKQIIVKHFIDEYMQGRTPNPCVLCNPLFKERILCEWADQTNCAHISTGHY 119 Query: 147 IR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 R +LY+ GDD +DQSYFL+ Q+ L FPLG K+ Sbjct: 120 CRLEERKGKLYIVAGDDQT------------KDQSYFLWKLPQEILQRFLFPLGTYTKQE 167 Query: 200 VRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGR 255 VR+ R+ G + A +S +ICF+ +G Y + ++ I + G V+ G +G+ Sbjct: 168 VREYLRQKGFEAKARGGESMEICFI-EGDYRNFLRSQCPDIDTQVGPGWFVNSKGVKIGQ 226 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H G YTIGQR+GL +A+G P +V+ ++ + V++G E L+ + + + + Sbjct: 227 HKGFPYYTIGQRKGLEIALGHPAYVLRINAEKNTVMLGDAEELKAEYMLVEDYHI----- 281 Query: 316 FEDAVVDGFKC---FVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 + D +C V+IR P+P V D+ + V F +A GQ+ VFY Sbjct: 282 --TEMQDLLQCKDLSVRIRYRSKPIPCQVLVLDEKQLLVRFLSEASAIAPGQSAVFYEG- 338 Query: 372 SNEARVLGGGIISGSK 387 RVLGG I+ + Sbjct: 339 ---KRVLGGAFIASQR 351 >gi|237724458|ref|ZP_04554939.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. D4] gi|229437327|gb|EEO47404.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides dorei 5_1_36/D4] Length = 364 Score = 166 bits (420), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 116/378 (30%), Positives = 186/378 (49%), Gaps = 44/378 (11%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDARRVCDTIN 84 MSGG+DSS +L+ GY+V+GVT++ ++ SR ++ + DV +A+ + + + Sbjct: 1 MSGGIDSSATCIMLQEQGYEVVGVTMRTWDIPSRFSTPGQDE---PDDVLEAKALAERLG 57 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + H+V D + F+ ++ F Y G TP PCV CN K L Q ++TG Sbjct: 58 IEHHVADVRKEFKQIIVKHFIDEYMQGRTPNPCVLCNPLFKERILCEWADQTNCAHISTG 117 Query: 145 HYIR-----SRLYV--GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 HY R +LY+ GDD +DQSYFL+ Q+ L FPLG K Sbjct: 118 HYCRLEERKGKLYIVAGDDQT------------KDQSYFLWKLPQEILQRFLFPLGTYTK 165 Query: 198 ESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQIL 253 + VR+ R+ G + A +S +ICF+ +G Y + ++ I + G V+ G + Sbjct: 166 QEVREYLRQKGFEAKARGGESMEICFI-EGDYRNFLRSQCPDIDTQVGPGWFVNSKGVKI 224 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+H G YTIGQR+GL +A+G P +V+ ++ + V++G E L+ + + + + Sbjct: 225 GQHKGFPYYTIGQRKGLEIALGHPAYVLRINAEKNTVMLGDAEELKAEYMLVEDYHI--- 281 Query: 314 GLFEDAVVDGFKC---FVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + D +C V+IR P+P V D+ + V F +A GQ+ VFY Sbjct: 282 ----TEMQDLLQCKDLSVRIRYRSKPIPCQVLVLDEKQLLVRFLSEASAIAPGQSAVFYE 337 Query: 370 SDSNEARVLGGGIISGSK 387 RVLGG I+ + Sbjct: 338 G----KRVLGGAFIASQR 351 >gi|53711506|ref|YP_097498.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis YCH46] gi|81383903|sp|Q64ZW2|MNMA1_BACFR RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 gi|52214371|dbj|BAD46964.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Bacteroides fragilis YCH46] Length = 364 Score = 166 bits (420), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 114/381 (29%), Positives = 185/381 (48%), Gaps = 36/381 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ RV++ MSGG DSSV A LL GY+V GVT + Y +++ + DAR Sbjct: 4 KNKRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNGSTEY---------LEDARA 54 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + H +D + F+ +I F Y +G TP+PC CN +K+ L + ++G Sbjct: 55 LAARLGIGHITYDARKVFQEQIIDYFIDEYMSGHTPVPCTLCNNQLKWPLLAKIADEMGI 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 LATGHY+R + G+ + D+++DQS+FL+ Q+ L + P+G M K Sbjct: 115 FYLATGHYVRKQWVDGN-----YYIAPAEDVDKDQSFFLWGLRQEILQRMLLPMGGMTKS 169 Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRI--------NAGIALE---GDIV 246 R A G + ++ K DS +CF Y +K+ N I + G + Sbjct: 170 EARAYAAGRGFEKVSKKKDSIGVCFCPL-DYRSFLKKCLCDESGDKNRNIYRKVERGRFL 228 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 +G + H G YTIGQRRGLG+ + +FV + ++ V++ +SLE ++L+ Sbjct: 229 DESGNFIAWHEGYPFYTIGQRRGLGIQLNRAVFVKEIHPETNEVVLASLKSLEKSEMWLK 288 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365 + N + E ++ VKIR + V +G +++ + +A GQA Sbjct: 289 DWNIVD----ESRLLGCDDVIVKIRYRKQENHCSVTITPEGLLHIRLHEPLSAIAEGQAA 344 Query: 366 VFYTSDSNEARVLGGGIISGS 386 FY + +LGGGII+ S Sbjct: 345 AFY----KDGLLLGGGIITMS 361 >gi|301605226|ref|XP_002932238.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Xenopus (Silurana) tropicalis] Length = 418 Score = 166 bits (420), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 123/388 (31%), Positives = 191/388 (49%), Gaps = 36/388 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVV AMSGGVDSSV A LL+R GY+V GV + N+ A G C A +D DA RVC Sbjct: 6 RVVCAMSGGVDSSVAALLLRRRGYEVTGVFM---NNWDAVDEHGVCSAERDCEDAYRVCK 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 +++ + Y + + + V F + Y G TP P + CN+ +KF+ LS LGAD Sbjct: 63 KLDIPFHQVSYVKEYWHEVFSYFLNEYEKGRTPNPDILCNKHIKFNHFLSYAIDILGADA 122 Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQ 182 +ATGHY R+ L + +++ I + + D +DQ++FL +Q Sbjct: 123 IATGHYARTSLEDEEIFQQKYIKSPQNLFRNRFEIRHDAKLLQAADRIKDQTFFLSQISQ 182 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 L FPLG++ K+ V+ +A E G + + +S ICF+ + + + + + A Sbjct: 183 YALRKTIFPLGELTKDFVKKIAAEAGFHHVLKRKESMGICFIGERNFENFI--LEYLEAQ 240 Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP-RESLE 299 G+ V +G+I+GRH G +T+GQR +G + FVV D + V V P + Sbjct: 241 PGNFVSAEDGKIMGRHKGWFLFTLGQRARIG-GQRDAWFVVDKDVTTGNVYVAPTTDHPA 299 Query: 300 VHRIYLR--EINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355 ++R LR ++WL + ++ V + +C + + VP + N DG V+ K Sbjct: 300 LYRDLLRTDRMHWLSEDPPDELVKNKMMECHFRFQHQMALVPCVLTLNQDGTVWATLVKP 359 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383 + GQ VFY + LG G I Sbjct: 360 IRALTPGQFAVFYKGEE----CLGSGKI 383 >gi|265764899|ref|ZP_06093174.1| tRNA methyl transferase [Bacteroides sp. 2_1_16] gi|263254283|gb|EEZ25717.1| tRNA methyl transferase [Bacteroides sp. 2_1_16] Length = 364 Score = 166 bits (419), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 114/381 (29%), Positives = 185/381 (48%), Gaps = 36/381 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ RV++ MSGG DSSV A LL GY+V GVT + Y +++ + DAR Sbjct: 4 KNKRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNGSTEY---------LEDARA 54 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + H +D + F+ +I F Y +G TP+PC CN +K+ L + ++G Sbjct: 55 LAARLGIGHITYDARKVFQEQIIDYFIDEYMSGHTPVPCTLCNNQLKWPLLAKIADEMGI 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 LATGHY+R + G+ + D+++DQS+FL+ Q+ L + P+G M K Sbjct: 115 FYLATGHYVRKQWIDGN-----YYIAPAEDVDKDQSFFLWGLRQEILQRMLLPMGGMTKS 169 Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRI--------NAGIALE---GDIV 246 R A G + ++ K DS +CF Y +K+ N I + G + Sbjct: 170 EARAYAAGRGFEKVSKKKDSIGVCFCPL-DYRSFLKKCLCDESGDKNRNIYRKVERGRFL 228 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 +G + H G YTIGQRRGLG+ + +FV + ++ V++ +SLE ++L+ Sbjct: 229 DESGNFIAWHEGYPFYTIGQRRGLGIQLNRAVFVKEIHPETNEVVLASLKSLEKSEMWLK 288 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365 + N + E ++ VKIR + V +G +++ + +A GQA Sbjct: 289 DWNIVD----ESRLLGCDDVIVKIRYRKQENHCSVTITPEGLLHIRLHEPLSAIAEGQAA 344 Query: 366 VFYTSDSNEARVLGGGIISGS 386 FY + +LGGGII+ S Sbjct: 345 AFY----KDGLLLGGGIITMS 361 >gi|116515102|ref|YP_802731.1| hypothetical protein BCc_166 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285502|sp|Q057R1|MNMA_BUCCC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|116256956|gb|ABJ90638.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 373 Score = 166 bits (419), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 119/372 (31%), Positives = 195/372 (52%), Gaps = 33/372 (8%) Query: 26 AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85 AMSGGVDSSV A LL + GY V G+ ++ ++ ++ C + D D ++VC T+N+ Sbjct: 13 AMSGGVDSSVSAWLLLKQGYQVEGLFMKNWDEDDSN---DYCSSKIDFNDVKKVCKTLNI 69 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLATG 144 + ++ E + V + F + G TP P + CN+ +KF+ L + + L +D ATG Sbjct: 70 PLHTINFSEEYWENVFLNFLKEHKKGNTPNPDILCNKIIKFNICLKFSLKYLKSDYFATG 129 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY + + K+ + R D ++DQSYFL+ + L + FPL KK+ +R +A Sbjct: 130 HYAKIK-----KTKKNFYLYRAHDKKKDQSYFLYTLKSKILSKIIFPLAYFKKKKIRKIA 184 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKR-INAGIALEGDIVHLNGQILGRHNGIINYT 263 +++ L + K DS ICF+Q K+ +K+ I I G I+ ++ + LG H G YT Sbjct: 185 KKIKLSVYKKKDSTGICFIQPKKFNSFLKQYIPQKI---GKILTMSKEFLGLHLGYEFYT 241 Query: 264 IGQRRGLGVAM------GEPLFVVYLD--KNSSRVIVGPRESLEVHRIYL-REINWLGDG 314 IGQR+GL + P +VV D N V+ G R + +L ++I+++ D Sbjct: 242 IGQRKGLNIGGKKKKKNAYPWYVVKKDIYLNIIFVVQGLRNPYLLSYGFLTKKIHYINDN 301 Query: 315 LFEDAVVDGFKCFVKIRSSQDPV--PVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 +F KC V+I+ Q+P+ F + + ++ + V F+K + V GQ+ VFY + Sbjct: 302 IFYFKK----KCVVQIKYRQEPIICEFFKISKKNNYIKVIFKKPILYVTPGQSAVFYLKN 357 Query: 372 SNEARVLGGGII 383 + LGG II Sbjct: 358 ----KCLGGSII 365 >gi|290999445|ref|XP_002682290.1| predicted protein [Naegleria gruberi] gi|284095917|gb|EFC49546.1| predicted protein [Naegleria gruberi] Length = 408 Score = 166 bits (419), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 128/394 (32%), Positives = 206/394 (52%), Gaps = 38/394 (9%) Query: 15 DKNPK-DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 +K P+ +R+VV MSGGVDSS+ A LLK G+DV+ + ++ ++S + + C +D Sbjct: 25 EKKPRGQIRIVVGMSGGVDSSLTACLLKEFGFDVVSLHMRNWDSSEEDPSREHCTFTKDW 84 Query: 74 YDARRVCDTINVSH-----YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 D + +C+T + H + ++ +++ N V Y+ G+TP P + CN+ +KF Sbjct: 85 NDVKVICETFGIKHVGSSFHPVEFIDQYWNDVFEKLLDGYSIGQTPNPDLFCNKFIKFDA 144 Query: 129 LLS-VTRQLGADVLATGHYIRSRLYVGDDGKRRRI-MCRPMDLERDQSYFLFATTQQQLC 186 +L+ + GAD +ATGHY ++L D+G+ + R +D +DQSYFL ++ Sbjct: 145 MLNYAIEKGGADYIATGHY--AQLGYSDNGETSNTHLLRAIDHSKDQSYFLSFVNKKAFE 202 Query: 187 DLRFPLGD-MKKESVRDLARE---MGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIAL 241 FPLG +KKE VR LAR+ ++ + DS ICF+ + K+ D + K I++ Sbjct: 203 KSLFPLGQFLKKEEVRVLARDHFKFPNELWGRKDSVGICFIGKRKFKDFLSKYIDSS--- 259 Query: 242 EGDIVHLNGQ--ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RE 296 +G+IV + + ILG H+G YTIGQ L M E FV D ++ + V P Sbjct: 260 KGNIVSIEDKTTILGEHDGASFYTIGQGMCLS-GMKEKWFVCEKDFKNNILYVCPGNNHP 318 Query: 297 SLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDG-----VYV 350 SL + +WL + + + + FVK+R +Q +P V ++D Sbjct: 319 SLLKSSFTISNCHWL------ENIDNSKEYFVKVRYNQREPFRCKVSYSNDSSLCDITLA 372 Query: 351 DFEKSEVGVASGQACVFYTSDS--NEARVLGGGI 382 D E+ G+ASGQ V Y S+S +E +GGGI Sbjct: 373 DSEEPARGIASGQIAVLYDSNSQFSEQICVGGGI 406 >gi|237720472|ref|ZP_04550953.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 2_2_4] gi|293368878|ref|ZP_06615481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides ovatus SD CMC 3f] gi|229450223|gb|EEO56014.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 2_2_4] gi|292636027|gb|EFF54516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides ovatus SD CMC 3f] Length = 385 Score = 166 bits (419), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 115/409 (28%), Positives = 182/409 (44%), Gaps = 67/409 (16%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV++ MSGG DSSV A L GY+VIGVT + Y +++ + DAR Sbjct: 4 ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFYELNGSTEY---------LEDARN 54 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + H +D E F +I F Y AG TP+PC+ CN +K+ L + ++G Sbjct: 55 LAERLGIRHITYDAREIFSKQIIEYFVQEYLAGRTPVPCILCNNYLKWPLLAKIADEMGV 114 Query: 139 DVLATGHY-----IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +ATGHY + + Y+ D ++DQ++FL+ Q LC + P+G Sbjct: 115 FYIATGHYAQNIQLNNTFYI----------TYAADSDKDQTFFLWGLKQDILCRMLLPMG 164 Query: 194 DMKKESVRDLAREMGL-DIADKSDSQDICFVQQ--------------------------- 225 D+ K R A E G +A K DS +CF Sbjct: 165 DITKVEARVWAAEHGFRKVATKKDSIGVCFCPMDYRTFLKNWLAQNNEALAEEEQMMGEN 224 Query: 226 ----GKYFDVVKRINAGI--ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLF 279 G + +V AG+ G V G + H G YTIGQRRGLG+ + P+F Sbjct: 225 QALVGDWQVLVGSNQAGLNKVKRGRFVDEKGDFIAWHEGYPFYTIGQRRGLGIHLNRPVF 284 Query: 280 VVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVP 338 V ++ + V++ +LE ++L++ N + ++ + VKIR Q+ Sbjct: 285 VKEINPEKNEVVLASLSALEKTEMWLKDWNLVN----QERTLGHSDIIVKIRYRKQENHA 340 Query: 339 VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387 D ++V + +A GQA FY + +LGGGII ++ Sbjct: 341 TITITPDHLLHVQLHEPLTAIAPGQAAAFY----KDGLLLGGGIIVNAR 385 >gi|60679769|ref|YP_209913.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis NCTC 9343] gi|81317158|sp|Q5LIS5|MNMA1_BACFN RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 gi|60491203|emb|CAH05951.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides fragilis NCTC 9343] Length = 364 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 113/379 (29%), Positives = 184/379 (48%), Gaps = 36/379 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ RV++ MSGG DSSV A LL GY+V GVT + Y +++ + DAR Sbjct: 4 KNKRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNGSTEY---------LEDARA 54 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + H +D + F+ +I F Y +G TP+PC CN +K+ L + ++G Sbjct: 55 LAARLGIGHITYDARKVFQEQIIDYFIDEYMSGHTPVPCTLCNNQLKWPLLAKIADEMGI 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 LATGHY+R + G+ + D+++DQS+FL+ Q+ L + P+G M K Sbjct: 115 FYLATGHYVRKQWIDGN-----YYIAPAEDVDKDQSFFLWGLRQEILQRMLLPMGGMTKS 169 Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRI--------NAGIALE---GDIV 246 R A G + ++ K DS +CF Y +K+ N I + G + Sbjct: 170 EARAYAAGRGFEKVSKKKDSIGVCFCPL-DYRSFLKKCLCDESGDKNRNIYRKVERGRFL 228 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 +G + H G YTIGQRRGLG+ + +FV + ++ V++ +SLE ++L+ Sbjct: 229 DESGNFIAWHEGYPFYTIGQRRGLGIQLNRAVFVKEIHPETNEVVLASLKSLEKSEMWLK 288 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365 + N + E ++ VKIR + V +G +++ + +A GQA Sbjct: 289 DWNIVD----ESRLLGCDDVIVKIRYRKQENHCSVTITPEGLLHIRLHEPLSAIAEGQAA 344 Query: 366 VFYTSDSNEARVLGGGIIS 384 FY + +LGGGII+ Sbjct: 345 AFY----KDGLLLGGGIIT 359 >gi|167721162|ref|ZP_02404398.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei DM98] Length = 296 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 100/271 (36%), Positives = 138/271 (50%), Gaps = 15/271 (5%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D I + Sbjct: 1 MSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVADLIGID 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 ++ +++ V F Y+AG TP P V CN +KF L LGA +ATGHY Sbjct: 58 VEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTIATGHY 117 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 R R G R + + D +DQSYFL Q QL FPLG++ K VR++A + Sbjct: 118 ARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVREIAAQ 172 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 +GL A K DS ICF+ + + D + R G + +G+ +G H G+ YT GQ Sbjct: 173 IGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAFYTFGQ 230 Query: 267 RRGLGV-----AMGEPLFVVYLDKNSSRVIV 292 R+G+G+ GEP FV D S+ + V Sbjct: 231 RKGIGLGGSKDGSGEPWFVAAKDIASNTLYV 261 >gi|124268750|ref|YP_001022754.1| tRNA-specific 2-thiouridylase MnmA [Methylibium petroleiphilum PM1] gi|166234857|sp|A2SLT0|MNMA_METPP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|124261525|gb|ABM96519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylibium petroleiphilum PM1] Length = 396 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 127/406 (31%), Positives = 188/406 (46%), Gaps = 52/406 (12%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K RVVV +SGGVDS+V A LLK+ G++V+G+ ++ + + C + QD DA Sbjct: 4 KKERVVVGLSGGVDSAVSAWLLKQQGHEVVGLFMKNWEDDDDDE---YCSSRQDFLDAAS 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ +R+ V F Y AG TP P V CN +KF L +LGA Sbjct: 61 VADVIGIEIEHVNFAAEYRDRVFAEFLREYEAGRTPNPDVLCNAEIKFKAFLDHALRLGA 120 Query: 139 DVLATGHYIRSR----LYVGDDGK----------RRRI--------MCRPMDLERDQSYF 176 +ATGHY R R L DG R R+ + + +D +DQSYF Sbjct: 121 GKIATGHYARVRRAPALPGMPDGPLDESSAGALDRARVREAGGRFELLKGLDASKDQSYF 180 Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN 236 L +Q QL FP+G++ K VR +A E+ L +A K DS ICF+ + + + + R Sbjct: 181 LHRLSQAQLARTLFPVGELPKTEVRRIAAEIRLPVAAKKDSTGICFIGERPFREFLNRYL 240 Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV------------AMGEPLFVVYLD 284 A G I G+ LG H G+ YT+GQR+G+G+ A P FV D Sbjct: 241 A--HAPGPIKDERGRTLGEHVGLSFYTLGQRKGIGIGGVKERGAARGGADHAPWFVARKD 298 Query: 285 K--NSSRVIVGP-RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341 + N+ V+ G L+ R+ + +W+ + K R Q + Sbjct: 299 RPHNTLYVVQGHDHPWLQSFRLEADDASWIAGTPPAPGALA-----AKTRYRQADASCVL 353 Query: 342 QRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 DG + +DF + V GQ+ V Y + LGGG+I+ + Sbjct: 354 APGADGRFRLDFGVPQWAVTPGQSAVLYDGEV----CLGGGVIAAA 395 >gi|196019212|ref|XP_002118942.1| hypothetical protein TRIADDRAFT_9863 [Trichoplax adhaerens] gi|190577616|gb|EDV18572.1| hypothetical protein TRIADDRAFT_9863 [Trichoplax adhaerens] Length = 136 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 74/126 (58%), Positives = 91/126 (72%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVVAMSGGVDSS VAA+L Y+VIG+TLQLY++ + + +KG+CCAGQD+YDA+ D Sbjct: 1 VVVAMSGGVDSSTVAAMLHEQNYEVIGITLQLYDAGEMAAKKGACCAGQDIYDAKVAADK 60 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + HYV +YE F VI FA SY GETP+PCV CN+ VKF DL + LGA LA Sbjct: 61 IGIPHYVLNYESLFSKKVIEDFAESYIKGETPIPCVKCNQKVKFEDLYKTAKNLGAKALA 120 Query: 143 TGHYIR 148 TGHY+R Sbjct: 121 TGHYVR 126 >gi|187735150|ref|YP_001877262.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Akkermansia muciniphila ATCC BAA-835] gi|205811102|sp|B2UPK4|MNMA_AKKM8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|187425202|gb|ACD04481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Akkermansia muciniphila ATCC BAA-835] Length = 357 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 108/275 (39%), Positives = 142/275 (51%), Gaps = 12/275 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R++V +SGGVDSSV AALL G+DV+G ++ N G C QD+ DA V Sbjct: 3 RILVGLSGGVDSSVAAALLVEQGHDVVGAYMK--NWVNDEGIPGECPWEQDIQDALAVAK 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 T + V D + +R ++ Y AG TP P V CNR +KF L + G D + Sbjct: 61 TTGIEFRVIDLVDEYRARIVNYLIEGYRAGYTPNPDVLCNREMKFGVFLDYALEQGFDYV 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R D + + R D +DQSYFL Q+ FPLGD+ K VR Sbjct: 121 ATGHYARRM-----DTPQGAFILRGRDPNKDQSYFLSLMRPDQIARAVFPLGDLLKPEVR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA + GL A K DSQ ICF+ Q K D ++ G+IV G+ LG HNG+ Sbjct: 176 VLAEKYGLPTARKKDSQGICFIGQVKMSDFLRHYLPDKP--GNIVDTEGRTLGTHNGLHL 233 Query: 262 YTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVG 293 +T+GQR+G GVA G VV D +R+I+G Sbjct: 234 FTMGQRKGHGVASPREGVAYVVVGKDVRRNRLILG 268 >gi|294102033|ref|YP_003553891.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Aminobacterium colombiense DSM 12261] gi|293617013|gb|ADE57167.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Aminobacterium colombiense DSM 12261] Length = 352 Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 118/370 (31%), Positives = 185/370 (50%), Gaps = 31/370 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGG+DS+V + LLK+ GY+V+GV L + ++ + A + Sbjct: 4 KVLVGMSGGLDSAVTSLLLKKQGYEVVGVFFALSGADESVAER----------QAADLAQ 53 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ V+D E F+ V+ S+Y G TP PC+ CN +VKF L + Q + Sbjct: 54 KLDIKFEVYDGRELFQKNVLTKLLSAYEKGMTPNPCILCNPSVKFKLLFFLAEQKAIPYV 113 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY +R+ + G + R +D ++DQSY L+ ++ L + FPLGD++KE VR Sbjct: 114 ATGHY--ARIVEEESGP---AIARGVDEKKDQSYMLYRLPREWLSSIVFPLGDLRKEEVR 168 Query: 202 DLAREMGLD-IADKSDSQDICFVQQG-KYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 ++A+ + + K +SQD+CF +G F + G I+ +G+ +G HNG+ Sbjct: 169 EIAKSFLPEWVVQKKESQDVCFAPEGLDDFLNFHLSDKKTCQPGSIMDESGKEIGTHNGL 228 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YTIGQR+GLG+ G P FVV + + + V ++ L RI W + Sbjct: 229 WRYTIGQRKGLGLP-GGPWFVVSKNIVHNILRVSRKKELSSLRI------WCEAPVMYRY 281 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYV--DFEKSEVGVASGQACVFYTSDSNEARV 377 + +G + R P V ++ + V E V VA GQ+ V Y D V Sbjct: 282 LTEGAFYMAEHRYRTRPFSVMIESVTEQAMVVRGVEICPV-VAPGQSLVLYNKDV----V 336 Query: 378 LGGGIISGSK 387 GGGII S+ Sbjct: 337 CGGGIIISSE 346 >gi|302690264|ref|XP_003034811.1| hypothetical protein SCHCODRAFT_232108 [Schizophyllum commune H4-8] gi|300108507|gb|EFI99908.1| hypothetical protein SCHCODRAFT_232108 [Schizophyllum commune H4-8] Length = 350 Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 127/367 (34%), Positives = 179/367 (48%), Gaps = 30/367 (8%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A L+ GYDV G+ ++ +++R S C +D D +RV Sbjct: 1 MSGGVDSSVTAKLMLDQGYDVSGIYMRNWDTRDESGTDEGCEWKKDWNDVQRV------- 53 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD--VLATG 144 D + + N V P ++A+G TP P V CNR VKF L L A+ ATG Sbjct: 54 ----DLSKEYWNRVFQPSLDAWASGVTPNPDVLCNRHVKFGALHEHMGLLAAEDTWFATG 109 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY R G R + +D +DQSY+L + + L FPLG + K V+ LA Sbjct: 110 HYARKSWSNG-----RPTLLAGLDPVKDQSYYLASICESNLRPALFPLGTLHKSEVKRLA 164 Query: 205 REMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGIINY 262 RE L +AD+ +S ICFV Q+GK+ + + + G A G I L G+ +G H G+ NY Sbjct: 165 REFKLPVADRKESMGICFVGQKGKFKEFLSKYLEGKA--GSIRSLETGEEIGGHEGLWNY 222 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG-DGLFED 318 T+G+R + M + +V D ++ V V P +L + +W+ D ED Sbjct: 223 TVGERARI-PNMLQRWYVADKDTENNIVYVVPGPDHPALFKRSTSVDHFDWIWKDAPPED 281 Query: 319 A-VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 +DG K FVK P V+R GV + ++ V+ GQ V Y D E RV Sbjct: 282 IDSLDGLKAFVKFIYRMSPTRCTVRRQGQGVQILLDEPMRDVSLGQVAVIYHGD--ERRV 339 Query: 378 LGGGIIS 384 LG G I+ Sbjct: 340 LGCGTIT 346 >gi|295099800|emb|CBK88889.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium cylindroides T2-87] Length = 386 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 119/377 (31%), Positives = 189/377 (50%), Gaps = 29/377 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-------SCCAGQDV 73 M+V+V +SGGVDS+V A LLK GYDV ++ ++S G +C QD Sbjct: 1 MKVLVGLSGGVDSAVAAYLLKEQGYDVTCCFMRNWDSYANGDIAGNPTIQDDTCPQEQDY 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ V + +N+ D+ + + + V F S Y G TP P + CN+ +KF Sbjct: 61 QDAKAVAEHLNLPLQRVDFIKEYWDYVFKTFLSEYEKGRTPNPDILCNKYIKFDAFFDYA 120 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + G D++ATGHY S + G + R D +DQ+YFL + L FPLG Sbjct: 121 MKQGFDMVATGHYC-SNMTEG----SFTYLTRAADTNKDQTYFLCQVSPAALHKTLFPLG 175 Query: 194 DMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQ 251 + K VR++A ++ L+ +A K DS ICF+ + + + N + +G+IV ++ G+ Sbjct: 176 KLIKPEVREIAAKLNLESVATKKDSTGICFIGERNFRQFLS--NYLPSQDGNIVDVDTGK 233 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307 ++GRH G++ YTIGQR+GL + + P FV+ D + + V +E L ++ Sbjct: 234 VVGRHVGVLYYTIGQRKGLNIDHEKGPWFVIGKDVQKNVLFVCHHTHKEWLYSDSCLVKG 293 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACV 366 INW + +D KC K R Q ++++ DD V + + V GQ V Sbjct: 294 INW----IVKDKNEIPEKCTCKFRYRQPDQDIYLKVLDDTTALVSYPQKIASVTIGQEAV 349 Query: 367 FYTSDSNEARVLGGGII 383 FY + + +GGG+I Sbjct: 350 FY----DGFKCIGGGVI 362 >gi|19114314|ref|NP_593402.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase [Schizosaccharomyces pombe 972h-] gi|3122971|sp|O13947|MTU1_SCHPO RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1 gi|2388924|emb|CAB11659.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Schizosaccharomyces pombe] Length = 415 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 126/406 (31%), Positives = 192/406 (47%), Gaps = 41/406 (10%) Query: 4 SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63 S+A + +S L +V VAMSGGVDSS A LLK GY+V GV ++ + ++ Sbjct: 15 SKAFQPHSTRLQWPKSQDKVFVAMSGGVDSSFSAYLLKSQGYNVEGVFMRNWLDEDSAP- 73 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 C A +D ++VC +N+S F++E+ + N V P Y G TP P V CNR Sbjct: 74 -SGCPAERDWATVQKVCKKLNISCRRFNFEKEYWNLVFEPSLDLYENGLTPNPDVSCNRQ 132 Query: 124 VKFSDLLSVTRQL------GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177 VKF L ++ G LA+GHY +S + + + MC P D +DQ+ FL Sbjct: 133 VKFGALFDALKKHCENNVKGDWWLASGHYAKSVVNIETNESH---MCIPTDKRKDQTLFL 189 Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQG---------- 226 ++ L FPL + KE+V+ A G +IA+K +SQ +CFV Sbjct: 190 CTIRKEALEKTIFPLHNWTKENVKKQASSAGFKEIAEKQESQGLCFVSPNVGRKFRKFLQ 249 Query: 227 KYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFV--VYLD 284 +Y + R IA + + G+ G H GI + T+G+R GL + + + Y+ Sbjct: 250 RYLNFSDRPIKVIAGKNVV----GEFSGNH-GIWSLTVGERCGLSLPQAQSEYFGRWYVW 304 Query: 285 K-----NSSRVIVGPRESLEVHR-IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP 338 K N+ + G L + + IYL++ W G L ++ CFV++R Q P Sbjct: 305 KKDIKNNALYICRGTNNELLMSKCIYLKDWKWCGTKL-QNLEKSALSCFVRVRHQQPLQP 363 Query: 339 VFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 V RN + V + F+ + V GQ Y +D LGGG++ Sbjct: 364 AKVTWRNPESVKIHFQDKQRAVTPGQVIAVYVNDV----CLGGGMV 405 >gi|313678598|ref|YP_004056338.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma bovis PG45] gi|312950108|gb|ADR24703.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma bovis PG45] Length = 374 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 123/376 (32%), Positives = 180/376 (47%), Gaps = 34/376 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 +V++ MSGGVDSSV A LL + GY+V G+ ++ ++S + G+ C QD + Sbjct: 6 KVILGMSGGVDSSVCAYLLLKQGYEVEGLFMRNWDSMLNNDFLGNENISQDICPQEQDYH 65 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133 DA V + + + + D+ + N V F S Y AG TP P + CN+ +KF Sbjct: 66 DALEVANKLGIKLHRVDFVNEYWNDVFKTFISEYEAGRTPNPDILCNKYIKFKAFSDYAF 125 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +A GHY + DG+ + R D +DQ+YFL + +QL + PL Sbjct: 126 NNLGADYIAMGHYAKVT-----DGR----LYRAKDQNKDQTYFLAQLSHEQLKRVLMPLA 176 Query: 194 DMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHL-NG 250 + KE VR +A+E GL A K DS ICF+ + K+ K + I ++ GDIV + Sbjct: 177 EFNSKEEVRKIAQEQGLITASKKDSTGICFIGERKF---TKFLQNYIPMQPGDIVDIRTN 233 Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 LG+H G YTIGQR+GL + EP +V D + + V P L YL Sbjct: 234 NKLGKHEGCFYYTIGQRKGLNLGGQAEPYYVCGHDVKKNILYVAPSSDLS----YLTSDA 289 Query: 310 WLGDGL-FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVF 367 L GL D K R Q+ +PV ++ ++ + V + V GQ V Sbjct: 290 LLATGLTLNHNDFDHNNLSAKFRYRQENIPVTIELLPNNTIKVYYPSEAQAVTPGQQVVI 349 Query: 368 YTSDSNEARVLGGGII 383 Y + LGG +I Sbjct: 350 YEGQ----KCLGGAVI 361 >gi|31542641|ref|NP_060476.2| mitochondrial tRNA-specific 2-thiouridylase 1 [Homo sapiens] gi|8134740|sp|O75648|MTU1_HUMAN RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1; AltName: Full=MTO2 homolog gi|4469186|emb|CAB38414.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Homo sapiens] gi|17149283|gb|AAL35970.1| 5-methylaminomethyl-2-thiouridylate-methyltransferase [Homo sapiens] gi|17432490|gb|AAL38183.1| 5-methylaminomethyl-2-thiouridylate-methyltransferase [Homo sapiens] gi|54633233|dbj|BAD66875.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Homo sapiens] gi|119593828|gb|EAW73422.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase, isoform CRA_a [Homo sapiens] gi|158254860|dbj|BAF83401.1| unnamed protein product [Homo sapiens] Length = 421 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 123/395 (31%), Positives = 190/395 (48%), Gaps = 50/395 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV A+SGGVDS+V A LL+R GY V GV ++ ++S G C A +D DA RVC Sbjct: 6 HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLD---EHGVCTADKDCEDAYRVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140 +++ + Y + + N V F + Y G TP P + CN+ +KFS LGAD Sbjct: 63 ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122 Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQ 182 +ATGHY R+ L + +++ + + + D +DQ++FL +Q Sbjct: 123 IATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQ 182 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV-----KRIN 236 L FPLG + KE V+ +A E L + K +S +CF+ + + + R Sbjct: 183 DALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPG 242 Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR- 295 I++E + ++LG H G YT+GQR +G + EP +VV D V V PR Sbjct: 243 HFISIE------DNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVAPRT 295 Query: 296 ESLEVHRIYLR--EINWLGD----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-V 348 + ++R LR ++W+ + L D +++ C + R VP + N DG V Sbjct: 296 DHPALYRDLLRTSRVHWIAEEPPAALVRDKMME---CHFRFRHQMALVPCVLTLNQDGTV 352 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 +V ++ +A+GQ VFY D LG G I Sbjct: 353 WVTAVQAVRALATGQFAVFYKGDE----CLGSGKI 383 >gi|299147036|ref|ZP_07040103.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 3_1_23] gi|298514921|gb|EFI38803.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 3_1_23] Length = 384 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 114/409 (27%), Positives = 181/409 (44%), Gaps = 67/409 (16%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV++ MSGG DSSV A L GY+VIGVT + Y +++ + DAR Sbjct: 3 ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFYELNGSTEY---------LEDARN 53 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + H +D E F +I F Y AG TP+PC CN +K+ L + ++G Sbjct: 54 LAERLGIRHITYDAREIFNKQIIDYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGV 113 Query: 139 DVLATGHY-----IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +ATGHY + + Y+ D ++DQ++FL+ Q LC + P+G Sbjct: 114 FYIATGHYAQNIQLNNTFYI----------TYAADSDKDQTFFLWGLKQDILCRMLLPMG 163 Query: 194 DMKKESVRDLAREMGL-DIADKSDSQDICFVQQ--------------------------- 225 ++ K R A E G +A K DS +CF Sbjct: 164 NITKVEARAWAAEHGFRKVATKKDSIGVCFCPMDYRTFLKNWLAQNSEALAEEEQMMGEN 223 Query: 226 ----GKYFDVVKRINAGI--ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLF 279 G + +V AG+ G V G + H G YTIGQRRGLG+ + P+F Sbjct: 224 QALVGDWQALVGSNQAGLNKVKRGRFVDEKGDFIAWHEGYPFYTIGQRRGLGIHLNRPVF 283 Query: 280 VVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVP 338 V ++ + V++ +LE ++L++ N + ++ + VKIR Q+ Sbjct: 284 VKEINPEKNEVVLASLSALEKTEMWLKDWNLVN----QERTLGHSDIIVKIRYRKQENHA 339 Query: 339 VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387 D ++V + +A GQA FY + +LGGGII ++ Sbjct: 340 TITITPDHLLHVQLHEPLTAIAPGQAAAFY----KDGLLLGGGIIVNAR 384 >gi|325128645|gb|EGC51514.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis N1568] Length = 367 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 126/383 (32%), Positives = 184/383 (48%), Gaps = 26/383 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++ NP + ++V +SGGVDSSV AALLK+ GY V GV +Q + + C Q Sbjct: 1 MNTTANPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 55 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D I + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 56 DSFDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 115 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 116 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 170 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 171 LGGLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMVTPEGK 228 Query: 252 ILGRHNGIINYTIGQRR-GLGVAMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYLREI 308 +G H G++ YT+GQR+ GEP FV L KN V+ G L +Y R + Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGGGEPWFVAAKDLTKNELIVVQGHDHPL----LYTRSL 284 Query: 309 --NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 N L L E + C + R + P + + V F++ + V GQ+ V Sbjct: 285 VMNDLSFTLPERPKAGRYTCKTRYRMADAPCELRYLDEETAELV-FDEPQWAVTPGQSAV 343 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 Y D LGGGII + + Sbjct: 344 LYDGDI----CLGGGIIQTTDKP 362 >gi|253683532|ref|NP_001156660.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Bos taurus] gi|296486862|gb|DAA28975.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Bos taurus] Length = 417 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 127/395 (32%), Positives = 191/395 (48%), Gaps = 52/395 (13%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VV A+SGGVDS+V A LL+R GY V GV ++ ++S G C A +D DA RVC Sbjct: 7 VVCAVSGGVDSAVAALLLRRRGYQVTGVFMKNWDS---LDEHGVCTADRDCEDAYRVCRI 63 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVL 141 +++ Y + + N V F + Y G TP P + CN+ +KF + LGAD + Sbjct: 64 LDIPFRQVSYAKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFRCFFNYAVDNLGADAV 123 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLER-------------------DQSYFLFATTQ 182 ATGHY R+ L + +++ I RP L R DQ++FL Q Sbjct: 124 ATGHYARTSLEDEEVFQQKHIK-RPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVPQ 182 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV-----KRIN 236 + L FPLG++ K+ V+ +A E L + K +S ICF+ + + + + R Sbjct: 183 EALRRTLFPLGELTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNFENFILEYLQPRPG 242 Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR- 295 I++E + ++LG H G YT+GQR +G + EP +VV D V+V PR Sbjct: 243 RFISIE------DNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVDKDGAKGDVLVAPRT 295 Query: 296 ESLEVHRIYLR--EINWLGD----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-V 348 + ++R LR ++W+ + L D +++ C + R VP + N DG V Sbjct: 296 DHPALYRDLLRTGRVHWIAEEPPAALVRDKMME---CHFRFRHQMALVPCVLTLNQDGTV 352 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 +V K+ +A GQ VFY D LG G I Sbjct: 353 WVTAVKAVRALAPGQFAVFYKGDE----CLGSGKI 383 >gi|242212937|ref|XP_002472299.1| predicted protein [Postia placenta Mad-698-R] gi|220728576|gb|EED82467.1| predicted protein [Postia placenta Mad-698-R] Length = 356 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 117/372 (31%), Positives = 176/372 (47%), Gaps = 31/372 (8%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSVVA LL YD+ V ++ +++R S C +D D +RVC +++ Sbjct: 1 MSGGVDSSVVAKLLAEQDYDLSAVFMRNWDTRDESGTDKGCEWEKDWEDVQRVCKMLDIP 60 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD--VLATG 144 + D +++ V P + G+TP P + CNR VKF L+ QL D +ATG Sbjct: 61 CEMVDLSQQYWTRVFEPSLQLWEKGQTPNPDIWCNREVKFGALMD---QLTGDDVWVATG 117 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY + + + RP D +DQ+Y+L A + L FPL K VR +A Sbjct: 118 HYADKSWFPC------KSLRRPRDRTKDQTYYLSAIPEASLARTIFPLAPFAKTEVRAMA 171 Query: 205 REMGLDIADKSDSQDICFVQQGKYFD--VVKRINAGIALEGDIVHL-NGQILGRHNGIIN 261 ++ L A +++S ICFV + + FD + + I +G I+ L G+ LG H G+ Sbjct: 172 KKWELPTAQRAESMGICFVGEKRRFDGFLSQYIT---PRQGPIIDLQTGKQLGTHTGLWT 228 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI-----NWLGDGLF 316 YTIGQ L M E +FV D + + V P + +Y R + W+ Sbjct: 229 YTIGQNARL-PGMPERMFVAKKDAERNEIYVVPSSTHPA--LYSRSLIASAWQWIWRDHP 285 Query: 317 EDAVVD--GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 + D GF V+ R P +QR +++ FE+ + VA GQ + D Sbjct: 286 PGGIDDELGFHGRVQYRHRMLDAPATIQRRGHTIHITFEEPQQSVAPGQIAAVWDGDW-- 343 Query: 375 ARVLGGGIISGS 386 LG GII+G+ Sbjct: 344 --CLGSGIITGT 353 >gi|326529305|dbj|BAK01046.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 491 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 128/380 (33%), Positives = 178/380 (46%), Gaps = 30/380 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RV V +SGGVDSSV LL G+ L+++ C D+ A+ VC Sbjct: 75 LRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFRNFWSECPWDDDLKYAQAVC 134 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I+V V + + N V+ S Y G TP P V CN +KF L LG D Sbjct: 135 DKIDVPLEVVHLSDEYWNHVVSHMISEYRNGRTPNPDVLCNTRIKFGAFLEAIENLGFDY 194 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A+GHY ++ + ++ D +DQ+YFL +Q QL L FPLG + K+ V Sbjct: 195 IASGHYAHVVHPPVENAEGPSVLQLSKDEVKDQTYFLSHLSQSQLRRLLFPLGCITKDEV 254 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA---GIALEGDIVHLNGQILGRHN 257 R LA +M L + DSQ ICF+ + K+ + V+ GI LE + G LG H Sbjct: 255 RSLAVQMNLPNQARKDSQGICFLGKVKFSEFVQAHIGEIEGILLEAE----TGDYLGTHR 310 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLR--EINWLGDG 314 G YTIGQR+GL ++ G P +VV D ++ V V SL+ R R +NW D Sbjct: 311 GFWFYTIGQRQGLRLS-GGPWYVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFSDS 369 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-----------NDDGVYVDFEKSEVGVASGQ 363 D + KC K+R S D V R N D + V + + G+A+GQ Sbjct: 370 GPADN--ERLKC--KVRHSPDFHNCTVTREQTEELVVNSNNGDVLAVRLSEDDQGLAAGQ 425 Query: 364 ACVFYTSDSNEARVLGGGII 383 FY ++ LG GII Sbjct: 426 FAAFY----RDSACLGSGII 441 >gi|218131789|ref|ZP_03460593.1| hypothetical protein BACEGG_03410 [Bacteroides eggerthii DSM 20697] gi|217986092|gb|EEC52431.1| hypothetical protein BACEGG_03410 [Bacteroides eggerthii DSM 20697] Length = 357 Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 118/356 (33%), Positives = 172/356 (48%), Gaps = 27/356 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARRV 79 RV++ MSGG DSSV A L GY+V GVT + Y G+ Y DAR + Sbjct: 13 RVLLGMSGGTDSSVAAMRLLDAGYEVTGVTFRFYE-----------VDGRTEYLDDARAL 61 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + H +D +E FR +I F Y AG TP+PC CN +K++ L + + G Sbjct: 62 AARLGIEHVTYDAQELFRERIIRYFIDEYLAGHTPVPCTLCNNELKWALLARIADEKGIY 121 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++TGHY R L +G+ + D ++DQ++FL+ Q L + P+GD+ KE Sbjct: 122 WISTGHYARKAL-LGEQC----YIAPASDRDKDQTFFLWGLKQDILQRMLLPMGDVTKEE 176 Query: 200 VRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL--NGQILGRH 256 R A G +A K DS +CF Y +KR L G + + G+ILGRH Sbjct: 177 ARAYAAGRGFARVASKKDSIGVCFCPL-DYRSFLKREVPAERLPGKGLFIGEKGEILGRH 235 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G YTIGQRRGLG+ + +FV + ++ V++ P SL + L++ N + Sbjct: 236 EGYPFYTIGQRRGLGIHLNRAVFVKEVRTATNEVVLAPLASLYKDEMLLKDWNLVS---- 291 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 E V+ VKIR + V DG + V + +A GQA FY +D Sbjct: 292 EQRVLGMETVIVKIRYRKQANRCRVALMADGCLRVSLLEPLEAIAPGQAAAFYDAD 347 >gi|197294784|ref|YP_001799325.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Phytoplasma australiense] gi|226704773|sp|B1VAX7|MNMA_PHYAS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|171854111|emb|CAM12100.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Candidatus Phytoplasma australiense] Length = 375 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 117/377 (31%), Positives = 186/377 (49%), Gaps = 32/377 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS------CCAGQDVYD 75 +VVV +SGGVDS+V A LLK+ GY+V V ++ ++S+ +G+ C D D Sbjct: 3 KVVVGLSGGVDSAVSALLLKKAGYEVEAVFMRNWDSQLNFDFQGNPTLNDVCPQELDYKD 62 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTR 134 A +V + + + ++ E + V + F +++ TP P + CN +KF ++ T Sbjct: 63 ALKVSLQLGIKLHRVNFIEEYWQKVFLYFINAFKNNLTPNPDILCNNEIKFKAFINYATS 122 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 +L +A GHY R + D ++ + C P+D +DQ+YFL QL ++ FPL D Sbjct: 123 KLKPQYIAMGHYAR---LIYDKNQKVSLAC-PLDKNKDQTYFLSQLKTSQLKNILFPLAD 178 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 + K+ VR +A E GL A K DS ICF+ + +F + N A +G I L+G L Sbjct: 179 LTKKEVRKIALENGLINACKKDSTGICFIGERNFFQFLN--NYLPAQKGSIKRLDGTFLT 236 Query: 255 RHNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G+I+YTIGQR+ LG+ + EP FVV + ++ + V P L R + + Sbjct: 237 YHKGVIHYTIGQRKNLGLGNFSSGQEPFFVVGKNLKTNTLYVEPNSQHPHLYSDRALIID 296 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366 + W G+ + K+R Q V + D + + + + + V GQ C Sbjct: 297 VTWRGEK-------TKTQIQAKMRYRQPNQKVTLNWLDANTLEILYPQKIKAVTPGQICA 349 Query: 367 FYTSDSNEARVLGGGII 383 FY D LG G+I Sbjct: 350 FYDDDI----CLGAGVI 362 >gi|317474596|ref|ZP_07933870.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA] gi|316909277|gb|EFV30957.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA] Length = 357 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 118/356 (33%), Positives = 174/356 (48%), Gaps = 27/356 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARRV 79 RV++ MSGG DSSV A L+ GY+V GVT + Y G+ Y DAR + Sbjct: 13 RVLLGMSGGTDSSVAAMRLQDAGYEVTGVTFRFYE-----------VDGRTEYLDDARAL 61 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + H +D E FR +I F Y AG TP+PC CN +K++ L + + G Sbjct: 62 AARLGIEHVTYDARELFRERIIRYFIDEYLAGHTPVPCTLCNNELKWALLARIADEKGIY 121 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++TGHY R L +G+ + D ++DQ++FL+ Q L + P+GD+ KE Sbjct: 122 WISTGHYARKAL-LGEQC----YIAPASDRDKDQTFFLWGLKQDILQRMLLPMGDVTKEE 176 Query: 200 VRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKR-INAG-IALEGDIVHLNGQILGRH 256 R A G +A K DS +CF Y +KR + AG + +G + G+ILG H Sbjct: 177 ARAYAAGRGFARVASKKDSIGVCFCPL-DYRSFLKREVPAGRLPGKGLFIGEKGEILGSH 235 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G YTIGQRRGLG+ + +FV + ++ V++ P SL + L++ N + Sbjct: 236 EGYPFYTIGQRRGLGIHLNRAVFVKEVRTATNEVVLAPLASLYKDEMLLKDWNLVS---- 291 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 E V+ VKIR + V DG + V + +A GQA FY +D Sbjct: 292 EQRVLGMETVIVKIRYRKQANHCRVALMADGCLRVSLLEPLEAIAPGQAAAFYDAD 347 >gi|283769381|ref|ZP_06342280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bulleidia extructa W1219] gi|283104038|gb|EFC05422.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bulleidia extructa W1219] Length = 378 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 109/364 (29%), Positives = 184/364 (50%), Gaps = 33/364 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73 M+++V +SGGVDS++ A LL++ G++V ++ ++S G+ C D Sbjct: 1 MKILVGLSGGVDSAIAAYLLRQQGHEVTCAFMRNWDSVANGDFSGNPTLNDPVCSQESDY 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ V D + + D+ + + + V F + Y G TP P + CNR +KF++ ++ Sbjct: 61 ADAQAVADKLGLPLLRVDFIKEYWDDVFQTFLNDYKKGRTPNPDILCNRYIKFAEFMNFA 120 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 ++ G + +ATGHY++ G ++ + D +DQSYFL ++ L + FPL Sbjct: 121 QKKGFETVATGHYVKLGYENG-----HGVLMKADDRNKDQSYFLAEVHREVLDHVVFPLA 175 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-I 252 +++K VRD+A E+GL IA K DS ICF+ + + + N G I+++ Q I Sbjct: 176 EIEKPKVRDMAFELGLSIAKKKDSTGICFIGERNFRAFLS--NYLPMKPGKIMNIVEQKI 233 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR------ 306 +G H G++ YTIGQR+GL + P FVV + ++ + V +E HR +LR Sbjct: 234 VGEHKGVLYYTIGQRKGLDIGGIGPFFVVGKNVETNTLYVVDQE----HRSWLRSDSCLV 289 Query: 307 -EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQA 364 +NWL D +F K R Q V +++ D+ + + + + V GQ Sbjct: 290 THVNWLADRMFP------LNGGAKFRYRQQDQAVTMEKVDEQTLLLKYPQGVEAVTPGQE 343 Query: 365 CVFY 368 V Y Sbjct: 344 AVLY 347 >gi|241767515|ref|ZP_04765194.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidovorax delafieldii 2AN] gi|241361655|gb|EER58004.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidovorax delafieldii 2AN] Length = 310 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 107/301 (35%), Positives = 153/301 (50%), Gaps = 35/301 (11%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P RVVV +SGGVDS+V A LLK+ G++V+G+ ++ + S+ C + D DA Sbjct: 4 PTKQRVVVGLSGGVDSAVTAYLLKQQGHEVVGIFMKNWEDDDDSE---YCSSNIDFVDAA 60 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 V D I + ++ +++ V F Y AG TP P V CN +KF L +LG Sbjct: 61 AVADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLG 120 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A+ +ATGHY R R + + +D +DQSYFL Q QL FP+G++ K Sbjct: 121 AEKIATGHYARVRQNAATGLFE---LLKGLDPSKDQSYFLHRLNQAQLSKTLFPVGELHK 177 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI--NAGIALEGDIVHLNGQILGR 255 VR +A E+GL A K DS ICF+ + + + + R +A ++ D G+ LGR Sbjct: 178 AEVRRIAAEIGLPNAKKKDSTGICFIGERPFREFLNRYISHAPGPMQDD----RGRTLGR 233 Query: 256 HNGIINYTIGQRRGLGV----AMG-----------------EPLFVVY--LDKNSSRVIV 292 H G+ YT+GQR+GLG+ A G EP FV L+KN RV+ Sbjct: 234 HVGLSFYTLGQRQGLGIGGVKAKGAELKAAQERGQRGVGEHEPWFVARKDLEKNVLRVVQ 293 Query: 293 G 293 G Sbjct: 294 G 294 >gi|256372326|ref|YP_003110150.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Acidimicrobium ferrooxidans DSM 10331] gi|256008910|gb|ACU54477.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Acidimicrobium ferrooxidans DSM 10331] Length = 341 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 106/271 (39%), Positives = 148/271 (54%), Gaps = 16/271 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVVAMSGGVDSSV A + + G+DVIGVTL+L +A+ +G CC+ DV DAR V Sbjct: 3 RVVVAMSGGVDSSVAALMAREAGHDVIGVTLRLT---EAAGDRG-CCSVGDVEDARTVAA 58 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + ++H V D F AV+ P+ ++ G TP PC+ CNR VK + L + ++LGA L Sbjct: 59 LLGINHIVADMRAEFHRAVVEPYLDAHRRGWTPNPCMSCNRYVKVTALAAWAQRLGASRL 118 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 TGHY DG R ++ R D +DQSY L + L L PLG++ K+ VR Sbjct: 119 VTGHYATVL-----DGS-RPMLVRGRDRRKDQSYVLADVPPEVLARLWLPLGELSKDEVR 172 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNGII 260 A GL + DK DSQD+CFV G+ ++A + L V + G+ +G Sbjct: 173 TRAHAAGLPVWDKRDSQDVCFVPHGR----AAFVSAAVGLTDVPVRDVAGEPVGVTLPFE 228 Query: 261 NYTIGQR-RGLGVAMGEPLFVVYLDKNSSRV 290 T+GQR R G + P +V+ + + RV Sbjct: 229 LATVGQRLREPGRSGSTPRYVIAKSRTAVRV 259 >gi|171057122|ref|YP_001789471.1| tRNA-specific 2-thiouridylase MnmA [Leptothrix cholodnii SP-6] gi|205816874|sp|B1XX60|MNMA_LEPCP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|170774567|gb|ACB32706.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Leptothrix cholodnii SP-6] Length = 380 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 116/386 (30%), Positives = 182/386 (47%), Gaps = 32/386 (8%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P R+VV +SGGVDS+V A LLK+ G++V+ + ++ + S+ C + QD DA Sbjct: 6 PPKQRIVVGLSGGVDSAVSAWLLKQQGHEVVAIFMKNWEDDDDSE---FCSSRQDFLDAA 62 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 V D + + ++ +++ V F Y+AG TP P V CN +KF L +LG Sbjct: 63 SVADVLGIEIEHVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMRLG 122 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY R R + + + +D +DQSYFL Q QL FP+G++ K Sbjct: 123 ADRIATGHYARVR---HNPATGLHELLKGLDPLKDQSYFLHRLNQAQLASTLFPVGELPK 179 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRH 256 VR +A E+GL A K DS ICF+ + + + + R ++ E G I G+ +G H Sbjct: 180 TEVRRIALEIGLPNAKKKDSTGICFIGERPFREFLNRY---LSHEPGPIKDDRGRRIGEH 236 Query: 257 NGIINYTIGQRRGLGV------------AMGEPLFVVYLD--KNSSRVIVGP-RESLEVH 301 G+ YT+GQR+G+G+ EP FV D N+ + G L+ Sbjct: 237 VGLSFYTLGQRKGIGIGGLKEKGAPRGGGEHEPWFVARKDLASNTLYAVQGHDHPWLQSQ 296 Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVA 360 R+ + +W+ G G + R + V + + + F + V Sbjct: 297 RLSADDASWI--GTVPQPGQGGLAAKTRYRQADSACAVDALDAAARTLSMSFPAPQWAVT 354 Query: 361 SGQACVFYTSDSNEARVLGGGIISGS 386 GQ+ V Y + LGG +I+ + Sbjct: 355 PGQSVVLYEGEV----CLGGAVIAAA 376 >gi|218192183|gb|EEC74610.1| hypothetical protein OsI_10221 [Oryza sativa Indica Group] Length = 488 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 127/374 (33%), Positives = 180/374 (48%), Gaps = 24/374 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RV V +SGGVDSSV LL G+ L+++ C D+ A+ VC Sbjct: 78 LRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIWFQEDFRNFWSECPWDDDLKYAQAVC 137 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I+V V + + N V+ + Y +G TP P V CN +KF L LG D Sbjct: 138 DKIDVPLEVVHLSDEYWNHVVSHIINEYRSGRTPNPDVLCNTRIKFGAFLEAIENLGFDY 197 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A+GHY DD + ++ D +DQ+YFL +Q QL L FPLG + K+ V Sbjct: 198 IASGHYAHVVHPSPDDVEGPSVLQLSKDKVKDQTYFLSHLSQTQLRRLLFPLGCITKDEV 257 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHN 257 R LA +M L D+ DSQ ICF+ + K+ + V+R G+ LE + G LG H Sbjct: 258 RRLAAQMDLPNQDRKDSQGICFLGKVKFSEFVERQIGEMEGVLLEAE----TGDYLGTHR 313 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLR--EINWLGDG 314 G YTIGQR+GL + G P +VV D ++ V V SL+ R R +NW + Sbjct: 314 GFWFYTIGQRQGLRLP-GGPWYVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFSNS 372 Query: 315 LFEDAVVDGFKCFVKIRSS---QDPVPVFVQRNDDGVY--VDFEKSEVGVASGQACVFYT 369 + + KC K+R S D Q +++GV V + + G+A+GQ FY Sbjct: 373 GPTNN--EQLKC--KVRHSPEFHDCTVTQEQTSENGVILVVRLSEDDQGLAAGQFAAFYR 428 Query: 370 SDSNEARVLGGGII 383 + LG GII Sbjct: 429 DNL----CLGSGII 438 >gi|109094553|ref|XP_001111019.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like isoform 2 [Macaca mulatta] Length = 422 Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 126/397 (31%), Positives = 189/397 (47%), Gaps = 53/397 (13%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV A+SGGVDS+V A LL+R GY V GV ++ ++S G C A +D DA RVC Sbjct: 6 HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDS---LDEHGVCTADKDCEDAYRVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140 +++ + Y + + N V F + Y G TP P + CN+ +KFS LGAD Sbjct: 63 ILDIPFHQVSYIKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLER-------------------DQSYFLFATT 181 +ATGHY R+ L + +++ I RP L R DQ++FL + Sbjct: 123 IATGHYARTSLEDEEVFQQKHIK-RPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVS 181 Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV------KR 234 Q L FPLG + KE V+ +A E L + K +S +CF+ + + + R Sbjct: 182 QDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQSYLQPR 241 Query: 235 INAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP 294 I++E + ++LG H G YT+GQR +G + EP +VV D V V P Sbjct: 242 PGHFISIE------DNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDGVKGNVFVAP 294 Query: 295 -RESLEVHRIYLR--EINWLGD----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG 347 R+ ++R LR ++W+ + L D +++ C + R VP + N DG Sbjct: 295 RRDHPALYRDLLRTSRVHWITEEPPAALVRDKMME---CHFRFRHQMALVPCVLTLNQDG 351 Query: 348 -VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 V+V ++ + +GQ VFY D LG G I Sbjct: 352 TVWVTAVQAVHALTTGQFAVFYKGDE----CLGSGKI 384 >gi|121998186|ref|YP_001002973.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Halorhodospira halophila SL1] gi|166234856|sp|A1WWV9|MNMA_HALHL RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|121589591|gb|ABM62171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Halorhodospira halophila SL1] Length = 383 Score = 162 bits (410), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 124/401 (30%), Positives = 188/401 (46%), Gaps = 31/401 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + ++PK R+VV +SGGVDS+V A L R G++VIG+ ++ + + C A D+ Sbjct: 1 MTESPK--RIVVGLSGGVDSAVAALRLVRAGHEVIGLFMKNWEDDDTLTQ---CSAEDDI 55 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 A V + + + ++ +R V AG TP P + CNR VKF L Sbjct: 56 AAAVAVAEHLGIPIRRVNFAAHYRREVFEHALQELRAGRTPNPDILCNRHVKFDRFLRHA 115 Query: 134 R-QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 R Q AD +ATGHY R+ G G + R +D +DQSYFL +Q L +RFPL Sbjct: 116 REQFEADAVATGHYART----GRAGDGEPALLRGIDPSKDQSYFLAGVPRQALDAVRFPL 171 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 GD KE+VR AR L D+ DS ICF+ + + ++R G I+ +G+ Sbjct: 172 GDSTKETVRAEARSAALPNFDRPDSTGICFIGERDFTQFMQRYID--PHPGPILTEDGRE 229 Query: 253 LGRHNGIINYTIGQRRGLGVA------MGEPLFVVYLD--KNSSRVIVGP-RESLEVHRI 303 +GRH G+ YT+GQRRGLG+ P +V D +N+ V+ G L+ + Sbjct: 230 IGRHCGLAFYTLGQRRGLGIGGDRNRDSSAPWYVAGKDARRNALFVVQGHDHPWLQSAAV 289 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASG 362 +WL +G + ++R Q+P + + G V F++ + G Sbjct: 290 STEPFHWLA-----PVPAEGARLHAQVRYRQEPQAGQLSHAEGGRVVFRFDEPQRAATPG 344 Query: 363 QACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403 Q V Y + + LGGG+I + +D L E Sbjct: 345 QHLVLY----DREQCLGGGVIDTAHPADRSAPPALQTQSTE 381 >gi|241557997|ref|XP_002400368.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ixodes scapularis] gi|215501775|gb|EEC11269.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ixodes scapularis] Length = 384 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 115/359 (32%), Positives = 174/359 (48%), Gaps = 17/359 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV MSGGVDSSV A LL++ GYDV GV ++ ++ A C D DA+ VCD Sbjct: 7 KVVCGMSGGVDSSVAAFLLRKSGYDVTGVFMRNWDPHDADSH---CDLDADETDAKWVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGADV 140 T+ + D+ + + + V P Y G TP P + CNR +KF ++ GAD Sbjct: 64 TLGIPFMTVDFVKPYWHNVFSPMLQEYQDGLTPNPDIMCNRVIKFGAFHRHAVKRFGADA 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R DG + + +D +DQS+FL Q L FPLG+ K V Sbjct: 124 VATGHYARIRNL--PDGSVE--LLQGVDPVKDQSFFLSQVGQAALQRTLFPLGEATKGQV 179 Query: 201 RDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258 + LAR +GL +ADK +S +CF+ + + V++ G V + G+++G H+G Sbjct: 180 KALARSLGLHRVADKKESMGMCFIGKQDFQSFVEKYVE--PKRGTFVDIETGKVVGSHSG 237 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315 + +T+GQR LG + FV L + +++V +L + +W+ L Sbjct: 238 VHAWTLGQRCRLG-GLRSAYFVARLCPITQQILVASGWDHPALRWREMRTGAPHWIRLPL 296 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSN 373 +C K + PVP V D G+ V + + ++ GQ VFY DS Sbjct: 297 VGGGGPPLARCLFKSQHLDPPVPCTVAEGPDGGLAVLLDHHKRAISPGQFAVFYGEDSQ 355 >gi|21312518|ref|NP_082339.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Mus musculus] gi|14195274|sp|Q9DAT5|MTU1_MOUSE RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1 gi|12838169|dbj|BAB24110.1| unnamed protein product [Mus musculus] gi|26335739|dbj|BAC31570.1| unnamed protein product [Mus musculus] gi|26336146|dbj|BAC31758.1| unnamed protein product [Mus musculus] gi|33867793|gb|AAQ55218.1| 5'methylaminomethyl-2-thiouridylate-methyltransferase [Mus musculus] gi|38512243|gb|AAH61026.1| TRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Mus musculus] gi|148672470|gb|EDL04417.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Mus musculus] Length = 417 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 128/395 (32%), Positives = 191/395 (48%), Gaps = 50/395 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV A+SGGVDS+V A LL+R GY V GV ++ ++S +G C A +D DA +VC Sbjct: 6 HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLD---EQGVCAADKDCEDAYKVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140 +++ + Y + + N V F + Y G TP P ++CN+ +KFS LGAD Sbjct: 63 ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDINCNKHIKFSCFYHYAVDNLGADA 122 Query: 141 LATGHYIRSRL----------YVGDDGK-RRRIMCR-PMDLE------RDQSYFLFATTQ 182 +ATGHY R+ L DG R R R P+ L +DQ++FL +Q Sbjct: 123 VATGHYARTSLEDEEVFEQKHTKKPDGLFRNRFEVRNPVKLLQAADSFKDQTFFLSQVSQ 182 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV-----KRIN 236 L FPLG++ K+ V+ +A E L + K +S ICF+ + + R Sbjct: 183 DALRRTIFPLGELTKDFVKKIAAENSLHHVLQKRESMGICFIGKRNLEHFLLQYLQPRPG 242 Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR- 295 +++E + V LG H G YT+GQR + + EP +VV D V+V PR Sbjct: 243 KFVSIEDNTV------LGTHKGWFLYTLGQRAKIS-GLREPWYVVEKDGTKGDVLVAPRV 295 Query: 296 ESLEVHRIYLR--EINWLGD----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-V 348 + ++R LR ++W+ + L D +++ C + R VP + N DG V Sbjct: 296 DHPALYRDLLRTNRVHWIAEEPPAALVRDKMME---CHFRFRHQMALVPCVLTLNQDGTV 352 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 +V K+ G+A GQ VFY + LG G I Sbjct: 353 WVTAVKAVRGLALGQFAVFYKGEE----CLGSGKI 383 >gi|205814822|sp|B2S125|MNMA_BORHD RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 354 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 108/369 (29%), Positives = 184/369 (49%), Gaps = 26/369 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVT-LQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ V +SGGVDSSV + + GY I L+++ + S G C +D+ V Sbjct: 1 MKIAVLLSGGVDSSVALYTMIQKGYKNIKCYYLKIWLEDELS-YIGECPWEEDINYVEAV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C NV + + ++ + V+ G TP P + CN+ +KF + D Sbjct: 60 CTKFNVPYEIISLQDEYYKRVVTYAIEELKIGNTPSPDIFCNQRIKFGAFFDKINE-HYD 118 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ TGHY + ++ I+ + D +DQSYFL +++Q+ L FPLGD+ K Sbjct: 119 LIVTGHYAKI-----ENKNNHYILKQAKDKIKDQSYFLSHLSREQISKLHFPLGDLLKTE 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258 +R +A ++ L ++ DSQ ICF+ + KY + +K + G L+G+I+ G+ILG HNG Sbjct: 174 IRQIAHKIDLPNKNRKDSQGICFLGKIKYDEFIKY-HLG-ELKGNIIEQETGKILGTHNG 231 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDGL 315 +TIGQR+G+ ++ G P FV D ++ + + + H+ + + NW+ Sbjct: 232 YWFFTIGQRKGIKLSHG-PWFVTEKDIQNNIIYISNSVNYLAQGKHQFLVHKTNWI---- 286 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 + V+ KIR + + ++ +D + VD E+ + G++ GQ C+FY D Sbjct: 287 --NKPVNNIDLSAKIRHGEKKIKCKIEMLKNDIIKVDLEEKDYGISPGQFCIFYQED--- 341 Query: 375 ARVLGGGII 383 LGG I Sbjct: 342 -ECLGGAQI 349 >gi|149001781|ref|ZP_01826754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP14-BS69] gi|147760239|gb|EDK67228.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP14-BS69] Length = 266 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 94/233 (40%), Positives = 130/233 (55%), Gaps = 9/233 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D V D Sbjct: 8 RVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVVAVAD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD + Sbjct: 65 QIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++K VR Sbjct: 125 ATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 LA E GL A K DS ICF+ + + + + N A G ++ ++G+ +G Sbjct: 181 KLAEEAGLSTAKKKDSTGICFIGEKNFKNFLS--NYLPAQPGRMMTVDGRDMG 231 >gi|308234530|ref|ZP_07665267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Atopobium vaginae DSM 15829] Length = 410 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 123/372 (33%), Positives = 183/372 (49%), Gaps = 24/372 (6%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P RV + MSGGVDS++ AALL+ GYDV + ++ + SR K C D+ DA Sbjct: 47 PFGARVYLGMSGGVDSALSAALLQEWGYDVKAIYMRNW-SRDLPGFK--CTWADDLADAE 103 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 R+ + ++ V+D E+ ++ V+ ++Y G TP P V CN+TVKF + + G Sbjct: 104 RLAVKLGLTLEVWDCEKEYKETVVDYLINAYQHGFTPNPDVMCNQTVKFGTFATRAFEHG 163 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-K 196 AD +ATGHY R V D + R D +DQ+YFL+ L FP+G + Sbjct: 164 ADFIATGHYAR----VYTDRHSHVHLLRAADEHKDQTYFLWRVNPSLLEKTIFPIGSIAS 219 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255 KE VR + GL I K DS ICF+ G+ ++ GDI+ G +LG Sbjct: 220 KEIVRQMCATRGLGIESKPDSDGICFI--GEVGIRTFLLDTLSKRAGDIIEWETGNVLGH 277 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312 H+G YTIGQR+GL + G +VV D +RV V L + L ++ L Sbjct: 278 HDGAFLYTIGQRKGLNLGGGPARYVVGTDTERNRVYVTANTKCPDLWCQTMVLDDVYLLN 337 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 + + E A+ V++R + V V+ +D + + FE + +A+GQ+ V Y Sbjct: 338 ESIDEHALYQ-----VRLRHTGKLQDVHVKLIHDHKIELHFESAVPKIAAGQSAVIYQGK 392 Query: 372 SNEARVLGGGII 383 +GGGII Sbjct: 393 I----CVGGGII 400 >gi|209529646|ref|NP_001129348.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Rattus norvegicus] gi|149065691|gb|EDM15564.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase (predicted), isoform CRA_a [Rattus norvegicus] Length = 417 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 124/395 (31%), Positives = 190/395 (48%), Gaps = 50/395 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV A+SGGVDS+V A LL+R GY V GV ++ ++S +G C A +D DA +VC Sbjct: 6 HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLD---EQGICAADKDCEDAYKVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140 +++ + Y + + N V F + Y G TP P + CN+ +KFS LGAD Sbjct: 63 ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDISCNKHIKFSCFHHYAVDNLGADA 122 Query: 141 LATGHYIRSRL---YVGDDGKRRRI---------------MCRPMDLERDQSYFLFATTQ 182 +ATGHY R+ L V + +R + + D +DQ++FL +Q Sbjct: 123 VATGHYARTSLEDEEVFEQKHTKRPDGLFRNRFEVRNPVKLLQAADSFKDQTFFLSQVSQ 182 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV-----KRIN 236 L FPLG++ K+ V+ +A E L + K +S ICF+ + + R Sbjct: 183 DALRRTIFPLGELTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNLEHFLLQYLQPRPG 242 Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR- 295 I++E + ++LG H G YT+GQR + + EP +VV D V+V PR Sbjct: 243 KFISIE------DNRVLGTHKGWFLYTLGQRAKIS-GLSEPWYVVEKDGTKGDVLVAPRV 295 Query: 296 ESLEVHRIYLR--EINWLGD----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-V 348 + ++R LR ++W+ + L D +++ C + R VP + N DG V Sbjct: 296 DHPALYRDLLRTNRVHWIAEEPPAALVRDKMME---CHFRFRHQMALVPCVLTLNQDGTV 352 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 +V K+ G+A GQ VFY + LG G I Sbjct: 353 WVTAVKAVRGLALGQFAVFYKGEE----CLGSGKI 383 >gi|209364581|ref|NP_001125570.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Pongo abelii] Length = 421 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 123/392 (31%), Positives = 187/392 (47%), Gaps = 44/392 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV A+SGGVDS+V A LL+R GY V GV ++ ++S G C A +D DA RVC Sbjct: 6 HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLD---EHGVCTADKDCEDAYRVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140 +++ + Y + + N V F + Y G TP P + CN+ +KFS LGAD Sbjct: 63 ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122 Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQ 182 +ATGHY R+ L + +++ I + + D + Q++FL +Q Sbjct: 123 IATGHYARTSLEDEEVFEQKHIKKPEGLFRNRFEVRNAVKLLQAADSFKGQTFFLSQVSQ 182 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV-----KRIN 236 L FPLG + KE V+ +A E L + K +S +CF+ + + + R Sbjct: 183 DALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPG 242 Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR- 295 I++E + ++LG H G YT+GQR +G + EP +VV D V V PR Sbjct: 243 HFISIE------DNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVAPRT 295 Query: 296 ESLEVHRIYLR--EINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVD 351 + ++R LR ++W+ + V D +C + R VP + N DG V+V Sbjct: 296 DHPALYRDLLRTSRVHWIAEEPPAVLVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVT 355 Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 ++ +A+GQ VFY D LG G I Sbjct: 356 AVQAVRALATGQFAVFYKGDE----CLGSGKI 383 >gi|315920804|ref|ZP_07917044.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694679|gb|EFS31514.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 384 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 114/409 (27%), Positives = 184/409 (44%), Gaps = 67/409 (16%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV++ MSGG DSSV A L GY+VIGVT + Y +++ + DAR Sbjct: 3 ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFYELNGSTEY---------LEDARN 53 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + H +D E F +I F Y AG TP+PC CN +K+ L + ++G Sbjct: 54 LAERLGIRHITYDAREIFSKQIIEYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGI 113 Query: 139 DVLATGHY-----IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +ATGHY + + Y+ D ++DQ++FL+ Q LC + P+G Sbjct: 114 FYIATGHYAQNIQLNNTFYI----------TYAADSDKDQTFFLWGLKQDILCRMLLPMG 163 Query: 194 DMKKESVRDLAREMGL-DIADKSDSQDICFVQQG-KYF--DVVKRINAGIALE------- 242 D+ K R A E G +A K DS +CF + F + + + +A +A E Sbjct: 164 DITKVEARVWAAEHGFRKVATKKDSIGVCFCPMDYRTFLRNWLAQNSAALAGEEQMMEED 223 Query: 243 -----------------------GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLF 279 G V G + H G YTIGQRRGLG+ + P+F Sbjct: 224 QVLVEDCQRLTGSNQVGLNKVKRGRFVDEKGDFIAWHEGYPFYTIGQRRGLGIHLNRPVF 283 Query: 280 VVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVP 338 V ++ + V++ +LE ++L++ N + ++ + VKIR Q+ Sbjct: 284 VKEINPEKNEVVLASLSALEKTEMWLKDWNLVN----QERTLGHSDIIVKIRYRKQENHA 339 Query: 339 VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387 + ++V + +A GQA FY + +LGGGII ++ Sbjct: 340 TITITPNHLLHVQLHEPLTAIAPGQAAAFY----KDGLLLGGGIIVNAR 384 >gi|187918538|ref|YP_001884101.1| tRNA-specific 2-thiouridylase MnmA [Borrelia hermsii DAH] gi|119861386|gb|AAX17181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia hermsii DAH] Length = 357 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 108/369 (29%), Positives = 184/369 (49%), Gaps = 26/369 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVT-LQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ V +SGGVDSSV + + GY I L+++ + S G C +D+ V Sbjct: 4 MKIAVLLSGGVDSSVALYTMIQKGYKNIKCYYLKIWLEDELS-YIGECPWEEDINYVEAV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C NV + + ++ + V+ G TP P + CN+ +KF + D Sbjct: 63 CTKFNVPYEIISLQDEYYKRVVTYAIEELKIGNTPSPDIFCNQRIKFGAFFDKINE-HYD 121 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ TGHY + ++ I+ + D +DQSYFL +++Q+ L FPLGD+ K Sbjct: 122 LIVTGHYAKI-----ENKNNHYILKQAKDKIKDQSYFLSHLSREQISKLHFPLGDLLKTE 176 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258 +R +A ++ L ++ DSQ ICF+ + KY + +K + G L+G+I+ G+ILG HNG Sbjct: 177 IRQIAHKIDLPNKNRKDSQGICFLGKIKYDEFIKY-HLG-ELKGNIIEQETGKILGTHNG 234 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDGL 315 +TIGQR+G+ ++ G P FV D ++ + + + H+ + + NW+ Sbjct: 235 YWFFTIGQRKGIKLSHG-PWFVTEKDIQNNIIYISNSVNYLAQGKHQFLVHKTNWI---- 289 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 + V+ KIR + + ++ +D + VD E+ + G++ GQ C+FY D Sbjct: 290 --NKPVNNIDLSAKIRHGEKKIKCKIEMLKNDIIKVDLEEKDYGISPGQFCIFYQED--- 344 Query: 375 ARVLGGGII 383 LGG I Sbjct: 345 -ECLGGAQI 352 >gi|328944127|ref|ZP_08241592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Atopobium vaginae DSM 15829] gi|327492096|gb|EGF23870.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Atopobium vaginae DSM 15829] Length = 430 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 123/372 (33%), Positives = 183/372 (49%), Gaps = 24/372 (6%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P RV + MSGGVDS++ AALL+ GYDV + ++ + SR K C D+ DA Sbjct: 67 PFGARVYLGMSGGVDSALSAALLQEWGYDVKAIYMRNW-SRDLPGFK--CTWADDLADAE 123 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 R+ + ++ V+D E+ ++ V+ ++Y G TP P V CN+TVKF + + G Sbjct: 124 RLAVKLGLTLEVWDCEKEYKETVVDYLINAYQHGFTPNPDVMCNQTVKFGTFATRAFEHG 183 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-K 196 AD +ATGHY R V D + R D +DQ+YFL+ L FP+G + Sbjct: 184 ADFIATGHYAR----VYTDRHSHVHLLRAADEHKDQTYFLWRVNPSLLEKTIFPIGSIAS 239 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255 KE VR + GL I K DS ICF+ G+ ++ GDI+ G +LG Sbjct: 240 KEIVRQMCATRGLGIESKPDSDGICFI--GEVGIRTFLLDTLSKRAGDIIEWETGNVLGH 297 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312 H+G YTIGQR+GL + G +VV D +RV V L + L ++ L Sbjct: 298 HDGAFLYTIGQRKGLNLGGGPARYVVGTDTERNRVYVTANTKCPDLWCQTMVLDDVYLLN 357 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 + + E A+ V++R + V V+ +D + + FE + +A+GQ+ V Y Sbjct: 358 ESIDEHALYQ-----VRLRHTGKLQDVHVKLIHDHKIELHFESAVPKIAAGQSAVIYQGK 412 Query: 372 SNEARVLGGGII 383 +GGGII Sbjct: 413 I----CVGGGII 420 >gi|260172511|ref|ZP_05758923.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides sp. D2] Length = 385 Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 114/409 (27%), Positives = 184/409 (44%), Gaps = 67/409 (16%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV++ MSGG DSSV A L GY+VIGVT + Y +++ + DAR Sbjct: 4 ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFYELNGSTEY---------LEDARN 54 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + H +D E F +I F Y AG TP+PC CN +K+ L + ++G Sbjct: 55 LAERLGIRHITYDAREIFSKQIIEYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGI 114 Query: 139 DVLATGHY-----IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +ATGHY + + Y+ D ++DQ++FL+ Q LC + P+G Sbjct: 115 FYIATGHYAQNIQLNNTFYI----------TYAADSDKDQTFFLWGLKQDILCRMLLPMG 164 Query: 194 DMKKESVRDLAREMGL-DIADKSDSQDICFVQQG-KYF--DVVKRINAGIALE------- 242 D+ K R A E G +A K DS +CF + F + + + +A +A E Sbjct: 165 DITKVEARVWAAEHGFRKVATKKDSIGVCFCPMDYRTFLRNWLAQNSAALAGEEQMMEED 224 Query: 243 -----------------------GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLF 279 G V G + H G YTIGQRRGLG+ + P+F Sbjct: 225 QVLVEDCQRLTGSNQVGLNKVKRGRFVDEKGDFIAWHEGYPFYTIGQRRGLGIHLNRPVF 284 Query: 280 VVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVP 338 V ++ + V++ +LE ++L++ N + ++ + VKIR Q+ Sbjct: 285 VKEINPEKNEVVLASLSALEKTEMWLKDWNLVN----QERTLGHSDIIVKIRYRKQENHA 340 Query: 339 VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387 + ++V + +A GQA FY + +LGGGII ++ Sbjct: 341 TITITPNHLLHVQLHEPLTAIAPGQAAAFY----KDGLLLGGGIIVNAR 385 >gi|327273596|ref|XP_003221566.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like [Anolis carolinensis] Length = 417 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 122/394 (30%), Positives = 192/394 (48%), Gaps = 48/394 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVV A+SGGVDS+V A LL+R GYDV GV ++ ++ + KG C A +D DA RVC+ Sbjct: 6 RVVCALSGGVDSAVAAVLLRRRGYDVTGVFMKNWD---IADEKGVCSADKDCDDAYRVCE 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140 +N+ + Y + + N V + Y G TP P + CN+ +KF+ +LGAD Sbjct: 63 ILNIPFHQVSYVKEYWNDVFSYLLNEYELGRTPNPDIICNKYIKFNYFFHYAVDKLGADA 122 Query: 141 LATGHYIRSRLYVGDDGK-RRRIMCRPMDLER-------------------DQSYFLFAT 180 +ATGHY R+ L GD+ +++ + RP L R DQ++FL Sbjct: 123 IATGHYARTSL--GDNEVFQQKYIQRPKGLFRNRFEIRNTVKLLQAADQFKDQTFFLSQI 180 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV-----KR 234 +Q+ L FPLGD+ K+ V+ +A E L + + +S ICF+ + + + R Sbjct: 181 SQEALRRTIFPLGDLTKDFVKKIAAEHHLHHVLQRKESMGICFIGERNFEKFILEYLEPR 240 Query: 235 INAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP 294 +++E D +++G H G YT+GQR + + + FVV + S V V P Sbjct: 241 PGNFVSIEDD------KVIGSHKGWFLYTLGQRARIS-GLKDAWFVVDKNTASGDVFVAP 293 Query: 295 -RESLEVHRIYLR--EINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VY 349 + ++R LR ++W+ + + + D +C + + VP + N DG V+ Sbjct: 294 STDHPALYRSLLRTNRVHWIAEEPPAELIRDKMMECNFRFQHQMALVPCTLTLNQDGTVW 353 Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 V + GQ VFY D + LG G I Sbjct: 354 VTLVTPLRALTPGQFAVFYKGD----KCLGSGKI 383 >gi|319900441|ref|YP_004160169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides helcogenes P 36-108] gi|319415472|gb|ADV42583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides helcogenes P 36-108] Length = 353 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 119/355 (33%), Positives = 174/355 (49%), Gaps = 27/355 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V++ MSGG DSSV A L+ GY+V GVT + Y + + + + DAR + Sbjct: 7 VLLGMSGGTDSSVAAMRLQEAGYEVTGVTFRFYEADGGT---------EYLEDARALAAR 57 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + H +D E FR VI F Y AG TP+PC CN +K++ L + + G ++ Sbjct: 58 LGIGHITYDAREAFRERVIRYFIDEYLAGRTPVPCTVCNNELKWALLAKIADEKGIYWVS 117 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY+R L G + + D ++DQS+FL+ Q L + P+GD+ K R Sbjct: 118 TGHYVRKVLQEG-----KYYIAPAADRDKDQSFFLWGLKQDILRRMLLPMGDIIKSEARA 172 Query: 203 LAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQILGRHNG 258 A G +A K DS +CF + + AG+ +G V G LG H G Sbjct: 173 YAAARGFRQVATKKDSIGVCFCPLD--YRSFLKCEAGVRKLPDKGKFVDEKGNFLGWHEG 230 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 YTIGQRRGLG+ + + +FV + + VI+ P SL ++L E N L E Sbjct: 231 YPFYTIGQRRGLGLQLNKAVFVKEISVEKNEVILAPLASLYKREMWLEEWN-----LAEY 285 Query: 319 A-VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 + V+D + VKIR + V DG ++V + VA+GQA FYT+D Sbjct: 286 SRVLDAEEVIVKIRYRKQANRCKVSLTADGLLHVCLAEPLEAVAAGQAAAFYTAD 340 >gi|307069664|ref|YP_003878141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Zinderia insecticola CARI] gi|306482924|gb|ADM89795.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Zinderia insecticola CARI] Length = 365 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 81/284 (28%), Positives = 158/284 (55%), Gaps = 19/284 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++++AMSGG+DSS+ A LLK+ GY VIG+ ++ ++ S +C ++ DA ++ + Sbjct: 4 KIILAMSGGIDSSITAWLLKKKGYKVIGIFMKNWHFNNNSIFDSNC---KEFLDALKISE 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLGADV 140 + + + D+ +++R + F Y P P + CN +KF L+ ++ + Sbjct: 61 YLKIKIKILDFSKKYRKFIFNKFLKEYKKNNIPNPDILCNSIIKFKFFLNYCIKKFKIKL 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + Y K + + + +D ++DQSYFL++ ++ + ++ FPLGD+ K+ + Sbjct: 121 IATGHYLRIKKY-----KNKFFLLKALDKKKDQSYFLYSLNKKNISNIIFPLGDLNKKDI 175 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGI 259 R +A+++ +K DS ICF+ + K ++K ++ I G I LN + + +H GI Sbjct: 176 RRIAKKIKFFNYNKKDSIGICFIGKNK---IIKFLSYYIIFNPGYIKLLNEKKINKHLGI 232 Query: 260 INYTIGQRRGLGVA------MGEPLFVVYLDKNSSRVIVGPRES 297 Y IGQR+GL + +P +V++ D ++ + + + + Sbjct: 233 NFYNIGQRKGLKIGGIKNNKKNKPWYVIFKDIKNNIIYISNKNN 276 >gi|190348444|gb|EDK40897.2| hypothetical protein PGUG_04995 [Meyerozyma guilliermondii ATCC 6260] Length = 412 Score = 160 bits (406), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 114/382 (29%), Positives = 186/382 (48%), Gaps = 39/382 (10%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D +VVAMS GVDSSV AA+ + +V G+ + A+ + + C D D +R+ Sbjct: 47 DDEIVVAMSSGVDSSVAAAIYAKKYKNVRGIYM-------ANWSQTAKCTEADWKDVQRI 99 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGA 138 C+ I + ++E + + V P S+Y G TP P V CN+ VKF ++ + LG Sbjct: 100 CEQIQIPCERVNFEREYWSDVFQPMISAYQEGLTPNPDVGCNKYVKFGKMVEHLGAMLGK 159 Query: 139 D---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 D L TGHY R + ++ +R + R + +DQSY+L L ++ P+G M Sbjct: 160 DRKWWLVTGHYAR---IMKNENTQRFSLLRGLYPNKDQSYYLSMVPYSILSNVLMPIGHM 216 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQG-----KYFDVVKRINAGIALEGDIVHLNG 250 K VR +A+++ L +A K DSQ +CFV Q K+ D N G+IV +G Sbjct: 217 TKPEVRQIAKDLNLLVASKPDSQGLCFVSQEENSFRKFLDEYIEPNP-----GNIVTEDG 271 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIV---GPRESLEVHR 302 +I G+H G+ + TIGQ+ G+ + G P FV + ++ +++ G SL + Sbjct: 272 KIWGQHQGLWHATIGQKSGISMPQGNPDYKGVWFVSEKRQATNELVIVKGGNHPSLFNSK 331 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVAS 361 + W+ + A ++ RS Q P+ V + D + ++ E+ +A Sbjct: 332 VLAENWTWIDEKNVAKAA--DMPYHIQYRSLQFPLKVKAIVPKADSLEIELEEKARAMAP 389 Query: 362 GQACVFYTSDSNEARVLGGGII 383 GQ V Y +++VLG G+I Sbjct: 390 GQNLVLY----KDSQVLGSGVI 407 >gi|146414139|ref|XP_001483040.1| hypothetical protein PGUG_04995 [Meyerozyma guilliermondii ATCC 6260] Length = 412 Score = 160 bits (404), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 114/382 (29%), Positives = 186/382 (48%), Gaps = 39/382 (10%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D +VVAMS GVDSSV AA+ + +V G+ + A+ + + C D D +R+ Sbjct: 47 DDEIVVAMSSGVDSSVAAAIYAKKYKNVRGIYM-------ANWSQTAKCTEADWKDVQRI 99 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGA 138 C+ I + ++E + + V P S+Y G TP P V CN+ VKF ++ + LG Sbjct: 100 CEQIQIPCERVNFEREYWSDVFQPMISAYQEGLTPNPDVGCNKYVKFGKMVEHLGAMLGK 159 Query: 139 D---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 D L TGHY R + ++ +R + R + +DQSY+L L ++ P+G M Sbjct: 160 DRKWWLVTGHYAR---IMKNENTQRFSLLRGLYPNKDQSYYLSMVPYSILSNVLMPIGHM 216 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQG-----KYFDVVKRINAGIALEGDIVHLNG 250 K VR +A+++ L +A K DSQ +CFV Q K+ D N G+IV +G Sbjct: 217 TKPEVRQIAKDLNLLVASKPDSQGLCFVSQEENSFRKFLDEYIEPNP-----GNIVTEDG 271 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIV---GPRESLEVHR 302 +I G+H G+ + TIGQ+ G+ + G P FV + ++ +++ G SL + Sbjct: 272 KIWGQHQGLWHATIGQKLGISMPQGNPDYKGVWFVSEKRQATNELVIVKGGNHPSLFNSK 331 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVAS 361 + W+ + A ++ RS Q P+ V + D + ++ E+ +A Sbjct: 332 VLAENWTWIDEKNVAKAA--DMPYHIQYRSLQFPLKVKAIVPKADSLEIELEEKARAMAP 389 Query: 362 GQACVFYTSDSNEARVLGGGII 383 GQ V Y +++VLG G+I Sbjct: 390 GQNLVLY----KDSQVLGSGVI 407 >gi|148377683|ref|YP_001256559.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma agalactiae PG2] gi|205816906|sp|A5IYK6|MNMA_MYCAP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|148291729|emb|CAL59115.1| TRNA(5 methylaminomethyl 2 thiouridylate) methyltransferase [Mycoplasma agalactiae PG2] Length = 374 Score = 160 bits (404), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 122/376 (32%), Positives = 178/376 (47%), Gaps = 34/376 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 +V++ MSGGVDSSV A LL + GY+V G+ ++ ++S + G+ C QD Sbjct: 6 KVILGMSGGVDSSVCAYLLLKQGYEVEGLFMRNWDSMLNNDFLGNENISQDICPQEQDYQ 65 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133 DA V + + + + D+ + N V F S Y AG TP P + CN+ +KF Sbjct: 66 DALEVANKLGIKLHRVDFVNEYWNDVFKTFISEYEAGRTPNPDILCNKYIKFKAFSDYAF 125 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +A GHY + DG+ + R D +DQ+YFL + +QL + PL Sbjct: 126 NNLGADYIAMGHYAKVT-----DGR----LYRAKDQNKDQTYFLAQLSHEQLKRVLMPLA 176 Query: 194 DM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHL-NG 250 + KE VR +A+E L A K DS ICF+ + K+ K + I ++ GDIV + Sbjct: 177 EFSSKEEVRKIAQEQDLITASKKDSTGICFIGERKF---TKFLQNYIPMQPGDIVDIRTN 233 Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 + LG+H G YTIGQR+GL + EP +V D + + V P L YL Sbjct: 234 KKLGKHEGCFYYTIGQRKGLNLGGQAEPYYVCGHDVKKNILYVAPSSDLS----YLTSDA 289 Query: 310 WLGDGL-FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVF 367 L GL D K R Q +PV ++ ++ + V + V GQ V Sbjct: 290 LLATGLTLNHDDFDHNNLSAKFRYRQQDIPVTIELLPNNTIKVYYPSESQAVTPGQQVVL 349 Query: 368 YTSDSNEARVLGGGII 383 Y + LGG +I Sbjct: 350 YEGQ----KCLGGAVI 361 >gi|298480486|ref|ZP_06998683.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. D22] gi|298273307|gb|EFI14871.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. D22] Length = 379 Score = 160 bits (404), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 113/392 (28%), Positives = 174/392 (44%), Gaps = 73/392 (18%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV++ MSGG DSSV A L GY+VIGVT + Y + GS + + DAR Sbjct: 4 ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFY------ELNGST---EYLEDARN 54 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + H +D E F +I F Y AG TP+PC CN +K+ L + ++G Sbjct: 55 LAERLGIRHITYDAREIFARQIIEYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGI 114 Query: 139 DVLATGHY-----IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +ATGHY + Y+ D ++DQ++FL+ Q L + P+G Sbjct: 115 FYIATGHYAQNIQLNETFYI----------TYAADSDKDQTFFLWGLKQDILNRMLLPMG 164 Query: 194 DMKKESVRDLAREMGL-DIADKSDSQDICF-------------VQQGK------------ 227 D+ K R A E G +A K DS +CF V+ G+ Sbjct: 165 DITKAEARAWAAEHGFRKVATKKDSIGVCFCPMDYRTFLKDWLVRNGQMSVSNSEASINN 224 Query: 228 ----------YFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEP 277 + D ++R G V G + H G YTIGQRRGLG+ + P Sbjct: 225 SQTSGSDKQTWSDRIRR--------GRFVDEKGNFIAWHEGYPFYTIGQRRGLGIHLNRP 276 Query: 278 LFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDP 336 +FV +D + V++ SLE ++L++ N + ++ +D VKIR Q+ Sbjct: 277 VFVKEIDPEKNEVMLASLSSLEKTEMWLKDWNLVN----QERTLDRSDIIVKIRYRKQEN 332 Query: 337 VPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 +D ++V + +A GQA FY Sbjct: 333 HGTITVTSDHLLHVQLHEPLTAIAPGQAAAFY 364 >gi|85057877|ref|YP_456793.1| tRNA (5-methylaminomethyl-2-thioruidylate) methyltransferase [Aster yellows witches'-broom phytoplasma AYWB] gi|123518066|sp|Q2NIM9|MNMA_AYWBP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|84789982|gb|ABC65714.1| tRNA (5-methylaminomethyl-2-thioruidylate) methyltransferase [Aster yellows witches'-broom phytoplasma AYWB] Length = 378 Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 119/388 (30%), Positives = 185/388 (47%), Gaps = 36/388 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS------CCAGQDVYD 75 +VVV +SGGVDS+V A LLK+ GY V V ++ ++S +G+ C D D Sbjct: 3 KVVVGLSGGVDSAVAAFLLKKQGYLVEAVFMRNWDSNLNFDIQGNPTLNDICPQELDYKD 62 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTR 134 A +V + + + + D+ E + V + F ++ TP P + CN +KF + VT Sbjct: 63 ALKVSEQLGIKLHRVDFIEEYWQKVFMSFIKAFENNLTPNPDILCNNEIKFRAFIEYVTT 122 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 +L +A GHY + K + +D +DQ+YFL +QL ++ FPLG+ Sbjct: 123 KLAPRYIAMGHYANIIYETFSEQKLFPQLACAVDQNKDQTYFLSQLATKQLQNILFPLGN 182 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 + K+ VR +A E L A K DS ICF+ + +F + N A +GDI L+G L Sbjct: 183 LTKQEVRQIALENNLINATKKDSTGICFIGERNFFQFLS--NYLPAQKGDIKTLDGTFLA 240 Query: 255 RHNGIINYTIGQRRGLGV---AMGEPLFVV--YLDKNSSRVIVG-PRESLEVHRIYLREI 308 H G++ YTIGQR+ LG+ + +P FVV +L N+ V G L + + +I Sbjct: 241 HHKGVMYYTIGQRKNLGLGDFSSQKPWFVVGKHLQTNTLYVEQGNTHPYLYSDKALISDI 300 Query: 309 NWLGDGLFEDAVVDGFKCFVKIR---SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 W G K+R +QD + ++ +N +Y + ++ V GQ C Sbjct: 301 VWRGKK-------TNLHLQAKMRYRQPNQDVILTWIDQNTLEIY--YPQTIKAVTPGQIC 351 Query: 366 VFYTSDSNEARVLGGGII-----SGSKR 388 FY N G G+I G+KR Sbjct: 352 AFY----NNNICCGAGVIKEVYFQGTKR 375 >gi|13357963|ref|NP_078237.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762343|ref|YP_001752485.1| tRNA-specific 2-thiouridylase MnmA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920416|ref|ZP_02931735.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508565|ref|ZP_02958082.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701789|ref|ZP_02971467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|14195293|sp|Q9PQ88|MNMA_UREPA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|189040514|sp|B1AJ41|MNMA_UREP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|11277497|pir||H82896 tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase UU402 [imported] - Ureaplasma urealyticum gi|6899388|gb|AAF30812.1|AE002137_11 tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827920|gb|ACA33182.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902858|gb|EDT49147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182676011|gb|EDT87916.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701067|gb|EDU19349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 385 Score = 159 bits (403), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 122/382 (31%), Positives = 189/382 (49%), Gaps = 43/382 (11%) Query: 26 AMSGGVDSSVVAALLKRDGYDVIGVTLQLY-------NSRKASKRKGSCCAGQDVYDARR 78 +SGGVDSSV A LLK++GY+VIG+ + + N+ + +K C + D DA+ Sbjct: 12 GLSGGVDSSVSALLLKQEGYEVIGLFMSNWDTIANFENNHEFNKTHQGCESELDYQDAQA 71 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLG 137 V I + Y ++ + + + V F S Y TP P + CN+ +KF L+ + +L Sbjct: 72 VAQKIGIPLYRVEFIKEYWDNVFEYFLSEYQKNRTPNPDILCNQFIKFDSFLNYAKNELQ 131 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +A GHY R + + + + +D +DQ+YFL Q QL ++ FP+G + K Sbjct: 132 ADYIAMGHYARVK-----HDRNSSFLLKAIDTNKDQTYFLCNLNQNQLQNVLFPIGHLTK 186 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG------- 250 VR +A++ GL A+K DS ICF+ + N L+ I + G Sbjct: 187 LQVRAIAKKHGLITANKKDSTGICFIGER---------NFKTFLQNYIPNQPGQIINIVN 237 Query: 251 -QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 QI+G H G + YTIGQR+GL + M E +FV D + + V P S E + YL Sbjct: 238 NQIIGHHIGTMYYTIGQRKGLNLGGMNERMFVCDKDIDKKIIYVAP-SSFE--KQYLIST 294 Query: 309 NWLGDGL-FEDAVVDGFKCFVKIRSSQDPVPV--FVQ-RNDDGVYVDFEKSEVGVASGQA 364 L + + F + V+ R QD + V F+ +N V +++E S + GQ Sbjct: 295 QALIENINFIEPYNPQIPIMVRFRHRQDLIIVNDFLPIKNTKNVLINYE-SARAITPGQY 353 Query: 365 CVFYTSDSNEARVLGGGIISGS 386 VFY +D +GGGI+S + Sbjct: 354 AVFYQND----HCIGGGIVSKT 371 >gi|291320347|ref|YP_003515609.1| tRNA(5 methylaminomethyl 2 thiouridylate) methyltransferase [Mycoplasma agalactiae] gi|290752680|emb|CBH40653.1| TRNA(5 methylaminomethyl 2 thiouridylate) methyltransferase [Mycoplasma agalactiae] Length = 374 Score = 159 bits (402), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 121/376 (32%), Positives = 179/376 (47%), Gaps = 34/376 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 +V++ MSGGVDSSV A LL + G++V G+ ++ ++S + G+ C QD Sbjct: 6 KVILGMSGGVDSSVCAYLLLKQGFEVEGLFMRNWDSMLNNDFLGNENISQDICPQEQDYQ 65 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133 DA +V + + + + D+ + N V F S Y G TP P + CN+ +KF Sbjct: 66 DALKVANKLGIKLHRVDFVNEYWNDVFKTFISEYEHGRTPNPDILCNKYIKFKAFSDYAF 125 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +A GHY R DG+ + R DL +DQ+YFL + +QL + PL Sbjct: 126 NNLGADYIAMGHYARVT-----DGR----LYRAKDLNKDQTYFLAQLSHEQLEKVLMPLA 176 Query: 194 DM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHL-NG 250 D KE VR +A E L A K DS ICF+ + K+ K + I ++ GDIV + Sbjct: 177 DFTSKEEVRKIAEEQDLITASKKDSTGICFIGERKF---TKFLQNYIPMQPGDIVDIKTN 233 Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 + +G+H G YTIGQR+GL + EP +V + + + V P L YL Sbjct: 234 KKIGKHEGCFYYTIGQRKGLNLGGQAEPYYVCGHNVKENILYVSPSSDLS----YLTSDA 289 Query: 310 WLGDGL-FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVF 367 L GL D K R Q +PV ++ ++ + V + V GQ V Sbjct: 290 LLATGLTLNHDDFDLNNLSAKFRYRQKDIPVTIELLPNNAIKVYYPSEAQAVTPGQQVVL 349 Query: 368 YTSDSNEARVLGGGII 383 Y + + LGG +I Sbjct: 350 YDGE----KCLGGAVI 361 >gi|115451057|ref|NP_001049129.1| Os03g0174600 [Oryza sativa Japonica Group] gi|108706458|gb|ABF94253.1| tRNA methyl transferase family protein, expressed [Oryza sativa Japonica Group] gi|113547600|dbj|BAF11043.1| Os03g0174600 [Oryza sativa Japonica Group] gi|215737060|dbj|BAG95989.1| unnamed protein product [Oryza sativa Japonica Group] Length = 488 Score = 159 bits (402), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 126/374 (33%), Positives = 178/374 (47%), Gaps = 24/374 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RV V +SGGVDSSV LL G+ L+++ C D+ A+ VC Sbjct: 78 LRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIWFQEDFRNFWSECPWDDDLKYAQAVC 137 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I+V V + + N V+ + Y +G TP P V CN +KF L LG D Sbjct: 138 DKIDVPLEVVHLSDEYWNHVVSHIINEYRSGRTPNPDVLCNTRIKFGAFLEAIENLGFDY 197 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A+GHY DD + ++ D +DQ+YFL +Q QL L FPLG + K+ V Sbjct: 198 IASGHYAHVVHPSPDDVEGPSVLQLSKDKVKDQTYFLSHLSQTQLRRLLFPLGCITKDEV 257 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHN 257 R LA +M L D+ DSQ ICF+ + K+ + V+R G+ LE + G LG H Sbjct: 258 RRLAAQMDLPNQDRKDSQGICFLGKVKFSEFVERQIGEMEGVLLEAE----TGDYLGTHR 313 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLR--EINWLGDG 314 G YTIGQR+GL + G P +VV ++ V V SL+ R R +NW + Sbjct: 314 GFWFYTIGQRQGLRLP-GGPWYVVEKGVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFSNS 372 Query: 315 LFEDAVVDGFKCFVKIRSS---QDPVPVFVQRNDDGVY--VDFEKSEVGVASGQACVFYT 369 + + KC K+R S D Q ++ GV V + + G+A+GQ FY Sbjct: 373 GPTNN--EQLKC--KVRHSPEFHDCTVTQEQTSEHGVILVVRLSEDDQGLAAGQFAAFYR 428 Query: 370 SDSNEARVLGGGII 383 + LG GII Sbjct: 429 DNL----CLGSGII 438 >gi|298387127|ref|ZP_06996681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 1_1_14] gi|298260277|gb|EFI03147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 1_1_14] Length = 369 Score = 159 bits (402), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 113/388 (29%), Positives = 182/388 (46%), Gaps = 46/388 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV++ MSGG DSSV A L GY+V GVT + Y ++ + + DAR Sbjct: 3 ENKRVLLGMSGGTDSSVAAMRLLEAGYEVTGVTFRFYELNDST---------EYLEDARH 53 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + H +D E FR +I F Y G TP+PC CN +K+ L + ++G Sbjct: 54 LAERLGIRHITYDAREIFRKQIIEYFVREYMVGHTPVPCTLCNNYLKWPLLSKIADEMGI 113 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY+R ++ V D + D ++DQ++FL+ Q L + P+GD+ K Sbjct: 114 FYIATGHYVR-KVKVDDTC----YITYAADSDKDQTFFLWGLKQDILRRMLLPMGDITKV 168 Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKR----------------INAGIAL 241 R A E G +A K DS +CF Y +K+ ++AG Sbjct: 169 EARVFAAERGFQKVAVKRDSLGVCFCPM-DYRSFLKKWLVSNCQPQVSVGQPQVSAGQTW 227 Query: 242 EGDI-----VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE 296 ++ V G + H G YT+GQRRGLG+ + +FV + + V++ + Sbjct: 228 SAEVRRGRFVDEKGDFIAWHEGYPFYTVGQRRGLGIHLNRAVFVKEIRPEKNEVVLASLQ 287 Query: 297 SLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKS 355 +LE + L++ N + + ++ VKIR Q+ D+ ++V + Sbjct: 288 ALEKTEMLLKDWNIVN----RERLLGHADIIVKIRYRKQENHCTVTVTPDNFLHVQLHEP 343 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383 +ASGQA FY + +LGGGII Sbjct: 344 LTAIASGQAAAFY----KDGLLLGGGII 367 >gi|29348763|ref|NP_812266.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides thetaiotaomicron VPI-5482] gi|81443497|sp|Q8A2F1|MNMA2_BACTN RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|29340669|gb|AAO78460.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides thetaiotaomicron VPI-5482] Length = 370 Score = 159 bits (402), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 113/388 (29%), Positives = 182/388 (46%), Gaps = 46/388 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV++ MSGG DSSV A L GY+V GVT + Y ++ + + DAR Sbjct: 4 ENKRVLLGMSGGTDSSVAAMRLLEAGYEVTGVTFRFYELNDST---------EYLEDARH 54 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + H +D E FR +I F Y G TP+PC CN +K+ L + ++G Sbjct: 55 LAERLGIRHITYDAREIFRKQIIEYFVHEYMVGHTPVPCTLCNNYLKWPLLSKIADEMGI 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY+R ++ V D + D ++DQ++FL+ Q L + P+GD+ K Sbjct: 115 FYIATGHYVR-KVKVDDTC----YITYAADSDKDQTFFLWGLKQDILRRMLLPMGDITKV 169 Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVK----------------RINAGIAL 241 R A E G +A K DS +CF Y +K +++AG Sbjct: 170 EARAFAAERGFQKVAVKRDSLGVCFCPM-DYRSFLKMWLVSNCQPQVSVGQPQVSAGQTW 228 Query: 242 EGDI-----VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE 296 ++ V G + H G YT+GQRRGLG+ + +FV + + V++ + Sbjct: 229 SAEVRRGRFVDEKGDFIAWHEGYPFYTVGQRRGLGIHLNRAVFVKEIRPEKNEVVLASLQ 288 Query: 297 SLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKS 355 +LE + L++ N + + ++ VKIR Q+ D+ ++V + Sbjct: 289 ALEKTEMLLKDWNIVN----RERLLGHADIIVKIRYRKQENHCTVTVTLDNFLHVQLHEP 344 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383 +ASGQA FY + +LGGGII Sbjct: 345 LTAIASGQAAAFY----KDGLLLGGGII 368 >gi|294155486|ref|YP_003559870.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma crocodyli MP145] gi|291599923|gb|ADE19419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma crocodyli MP145] Length = 372 Score = 159 bits (402), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 116/375 (30%), Positives = 182/375 (48%), Gaps = 31/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 +VV+ MSGGVDSSV A LLK GY+VIG+ ++ ++S + G+ C QD Sbjct: 5 KVVIGMSGGVDSSVAAYLLKEQGYEVIGLFMRNWDSILNNDILGNEKINQDICPQEQDYQ 64 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133 DA V +N+ + D+ + + V F Y G TP P + CN+ +KF+ + Sbjct: 65 DALSVAQKLNIPLHRVDFVKEYWTNVFNNFIEEYKKGRTPNPDILCNKYIKFNYFANYAF 124 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +LGAD +A GHY + ++GK + R D +DQ+YFL T++QL + PL Sbjct: 125 DKLGADYIAMGHYAKV-----ENGK----LYRAKDENKDQTYFLAQVTEEQLKKVIMPLY 175 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252 D++K +R LA ++ L A+K DS ICF+ + + ++ N A EGDIV + + Sbjct: 176 DLQKSQIRKLAADLNLSTANKKDSTGICFIGERNFTSFLQ--NYIPAQEGDIVDITTNKK 233 Query: 253 LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 + +H G YTIGQR+GL + EP +V + + + V P H YL + Sbjct: 234 VAKHVGCFYYTIGQRKGLNLGGFVEPYYVCGHNVKENILYVAPAS----HPEYLDSNELI 289 Query: 312 GDGL-FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 L + VK R Q + ++ D+ + + + + V GQ V Y Sbjct: 290 ASNLTLNHKEFNNDNITVKFRYRQKDIKANIEILDNNFIKIYYPEKSQAVTPGQQVVLYD 349 Query: 370 SDSNEARVLGGGIIS 384 + + LGG +I Sbjct: 350 GE----KCLGGAVIE 360 >gi|253568894|ref|ZP_04846304.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 1_1_6] gi|251840913|gb|EES68994.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 1_1_6] Length = 369 Score = 159 bits (402), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 113/388 (29%), Positives = 182/388 (46%), Gaps = 46/388 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV++ MSGG DSSV A L GY+V GVT + Y ++ + + DAR Sbjct: 3 ENKRVLLGMSGGTDSSVAAMRLLEAGYEVTGVTFRFYELNDST---------EYLEDARH 53 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + H +D E FR +I F Y G TP+PC CN +K+ L + ++G Sbjct: 54 LAERLGIRHITYDAREIFRKQIIEYFVHEYMVGHTPVPCTLCNNYLKWPLLSKIADEMGI 113 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY+R ++ V D + D ++DQ++FL+ Q L + P+GD+ K Sbjct: 114 FYIATGHYVR-KVKVDDTC----YITYAADSDKDQTFFLWGLKQDILRRMLLPMGDITKV 168 Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVK----------------RINAGIAL 241 R A E G +A K DS +CF Y +K +++AG Sbjct: 169 EARAFAAERGFQKVAVKRDSLGVCFCPM-DYRSFLKMWLVSNCQPQVSVGQPQVSAGQTW 227 Query: 242 EGDI-----VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE 296 ++ V G + H G YT+GQRRGLG+ + +FV + + V++ + Sbjct: 228 SAEVRRGRFVDEKGDFIAWHEGYPFYTVGQRRGLGIHLNRAVFVKEIRPEKNEVVLASLQ 287 Query: 297 SLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKS 355 +LE + L++ N + + ++ VKIR Q+ D+ ++V + Sbjct: 288 ALEKTEMLLKDWNIVN----RERLLGHADIIVKIRYRKQENHCTVTVTLDNFLHVQLHEP 343 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383 +ASGQA FY + +LGGGII Sbjct: 344 LTAIASGQAAAFY----KDGLLLGGGII 367 >gi|39938611|ref|NP_950377.1| tRNA-specific 2-thiouridylase MnmA [Onion yellows phytoplasma OY-M] gi|81565131|sp|Q6YR90|MNMA_ONYPE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|39721720|dbj|BAD04210.1| tRNA(5-methylaminomethyl-2-thiouridylate) [Onion yellows phytoplasma OY-M] Length = 378 Score = 159 bits (402), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 120/388 (30%), Positives = 186/388 (47%), Gaps = 36/388 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS------CCAGQDVYD 75 +VVV +SGGVDS+V A LLK+ GY V V ++ ++S +G+ C D D Sbjct: 3 KVVVGLSGGVDSAVAAFLLKKQGYLVEAVFMRNWDSNLNFDIQGNPTLNDICSQELDYKD 62 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTR 134 + +V + + + + D+ E + V + F ++ TP P + CN +KF + T Sbjct: 63 SLKVSEQLGIKLHRVDFIEEYWQKVFMSFIKAFENNLTPNPDILCNNEIKFRAFIEYATT 122 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 +L +A GHY D K + +D +DQ+YFL T +QL ++ FPLG+ Sbjct: 123 KLAPQYIAMGHYANIIYETSSDQKLVPRLACAVDQNKDQTYFLSQLTTKQLQNILFPLGN 182 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 + K+ VR +A E L A K DS ICF+ + +F + N A +GDI L+G L Sbjct: 183 LTKQEVRQIALENNLINATKKDSTGICFIGERNFFQFLS--NYLPAQKGDIKTLDGTFLA 240 Query: 255 RHNGIINYTIGQRRGLG---VAMGEPLFVV--YLDKNSSRVIVGPRES-LEVHRIYLREI 308 H G++ YTIGQR+ LG V +P FVV +L N+ V G L + + +I Sbjct: 241 HHKGVMYYTIGQRKNLGLGDVPSQKPWFVVGKHLPTNTLYVEQGSTHPYLYSDKALIGDI 300 Query: 309 NWLGDGLFEDAVVDGFKCFVKIR---SSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 W G K+R +QD + ++ +N+ + + + ++ V GQ C Sbjct: 301 VWRGKK-------TNLHLQAKMRYRQPNQDVILTWLDQNN--LEIHYPQTIKAVTPGQIC 351 Query: 366 VFYTSDSNEARVLGGGII-----SGSKR 388 FY D N G G+I G+KR Sbjct: 352 AFY--DKNIC--CGAGVIKEVYFQGTKR 375 >gi|205829196|sp|B1WC37|MTU1_RAT RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1 gi|171846652|gb|AAI61991.1| Trmu protein [Rattus norvegicus] Length = 441 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 126/413 (30%), Positives = 196/413 (47%), Gaps = 62/413 (15%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV A+SGGVDS+V A LL+R GY V GV ++ ++S +G C A +D DA +VC Sbjct: 6 HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLD---EQGICAADKDCEDAYKVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140 +++ + Y + + N V F + Y G TP P + CN+ +KFS LGAD Sbjct: 63 ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDISCNKHIKFSCFHHYAVDNLGADA 122 Query: 141 LATGHYIRSRL---YVGDDGKRRRI---------------MCRPMDLERDQSYFLFATTQ 182 +ATGHY R+ L V + +R + + D +DQ++FL +Q Sbjct: 123 VATGHYARTSLEDEEVFEQKHTKRPDGLFRNRFEVRNPVKLLQAADSFKDQTFFLSQVSQ 182 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFV--QQGKYFDV---VKRIN 236 L FPLG++ K+ V+ +A E L + K +S ICF+ + ++F + V ++ Sbjct: 183 DALRRTIFPLGELTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNLEHFLLQVSVSDVS 242 Query: 237 AGIALEGDIVHL------------------NGQILGRHNGIINYTIGQRRGLGVAMGEPL 278 G+ G V + + ++LG H G YT+GQR + + EP Sbjct: 243 GGLLWAGAPVVMKPVFQYLQPRPGKFISIEDNRVLGTHKGWFLYTLGQRAKIS-GLSEPW 301 Query: 279 FVVYLDKNSSRVIVGPR-ESLEVHRIYLR--EINWLGD----GLFEDAVVDGFKCFVKIR 331 +VV D V+V PR + ++R LR ++W+ + L D +++ C + R Sbjct: 302 YVVEKDGTKGDVLVAPRVDHPALYRDLLRTNRVHWIAEEPPAALVRDKMME---CHFRFR 358 Query: 332 SSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 VP + N DG V+V K+ G+A GQ VFY + LG G I Sbjct: 359 HQMALVPCVLTLNQDGTVWVTAVKAVRGLALGQFAVFYKGEE----CLGSGKI 407 >gi|224537479|ref|ZP_03678018.1| hypothetical protein BACCELL_02358 [Bacteroides cellulosilyticus DSM 14838] gi|224520917|gb|EEF90022.1| hypothetical protein BACCELL_02358 [Bacteroides cellulosilyticus DSM 14838] Length = 350 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 103/313 (32%), Positives = 156/313 (49%), Gaps = 22/313 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV++ MSGG DSSV A L+ GY+V GVT + Y A+ + + DAR + Sbjct: 6 RVLLGMSGGTDSSVAAMRLQDAGYEVTGVTFRFYEKDGAT---------EYLDDARALAS 56 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H +D E FR+ +I F Y AG TP+PC CN +K++ L + + G + Sbjct: 57 RLGIEHITYDAREMFRSRIIRYFIDEYLAGHTPVPCTLCNNELKWTLLAKIADEKGIYWI 116 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK-ESV 200 +TGHY+R L G + M D ++DQ++FL+ Q + + P+GD+ K E+ Sbjct: 117 STGHYVRKILQGG-----KYYMAPAADRDKDQTFFLWGLKQDIIQRMLLPMGDITKVEAR 171 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDIVHLNGQILGRHNG 258 A +A K DS +CF + Y ++R L +G + NG LG H G Sbjct: 172 AFAAARGFHGVATKKDSIGVCFCPR-DYRSFLRREAGAQKLPNKGKFIDENGCFLGWHEG 230 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 YTIGQRRGLG+ M +FV + + V++ P SL ++L+ N + E Sbjct: 231 YPFYTIGQRRGLGIQMNRAVFVKEISVERNEVVLAPLASLYKQEMWLKGWNLVE----ES 286 Query: 319 AVVDGFKCFVKIR 331 V+ + VKIR Sbjct: 287 RVLQAKEVIVKIR 299 >gi|169334729|ref|ZP_02861922.1| hypothetical protein ANASTE_01135 [Anaerofustis stercorihominis DSM 17244] gi|169257467|gb|EDS71433.1| hypothetical protein ANASTE_01135 [Anaerofustis stercorihominis DSM 17244] Length = 354 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 120/366 (32%), Positives = 187/366 (51%), Gaps = 27/366 (7%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDS+V A LLK+ GYDVIG+ ++ ++ + G C A +D DAR VC +N+ Sbjct: 1 MSGGVDSTVSAYLLKKQGYDVIGLFMKNWDE---TDENGECSAEEDYDDARAVCLKLNIP 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVLATGH 145 Y ++ + + + V F Y G TP P V CN+ +KF L L AD +ATGH Sbjct: 58 CYTVNFTKEYWDNVFTYFLDEYKKGRTPNPDVLCNKEIKFKCFLDYAINVLNADYIATGH 117 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y +++ +G R + + D +DQ+YFL ++QL + FPL D++K VR++A Sbjct: 118 Y--AKVEHTKEGTR---LLKAKDQHKDQTYFLSLLKEKQLERVIFPLADVEKGEVREIAE 172 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIINYTI 264 G A K DS ICF+ + + ++ N GD++ ++ G+ G H G++ YT+ Sbjct: 173 REGFRNAKKKDSTGICFIGERNFTQFLQ--NYLPNQPGDMIDMDTGEKKGEHIGLMYYTL 230 Query: 265 GQRR---GLGVAMGEPLFVVYLDKNSS--RVIVGPRE-SLEVHRIYLREINWLGDGLFED 318 GQRR G GE +V D N++ ++ G + L + ++N + G + Sbjct: 231 GQRRGLGVGGCGSGERWYVADKDLNNNILYIVQGDKNPKLYKNGFIATDVNMIS-GHYPS 289 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARV 377 D F+C ++ R Q V+ D+ V F++ + GV GQ VFY + Sbjct: 290 ---DKFECEMRFRHLQPLKKATVEVIDESTARVIFDEEQSGVTPGQIAVFYDGEV----C 342 Query: 378 LGGGII 383 LGGG I Sbjct: 343 LGGGTI 348 >gi|119953460|ref|YP_945669.1| tRNA-specific 2-thiouridylase MnmA [Borrelia turicatae 91E135] gi|254811445|sp|A1R0A7|MNMA_BORT9 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|119862231|gb|AAX17999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia turicatae 91E135] Length = 354 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 111/374 (29%), Positives = 184/374 (49%), Gaps = 36/374 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVT-LQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ V +SGGVDSSV ++ + GY I L+++ + S G C +D+ V Sbjct: 1 MQIAVLLSGGVDSSVALYIMIQKGYKNIKCYYLKIWLEDELS-YIGECPWKEDINYVEAV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C NV + + ++ + V+ G TP P + CN+ +KF + D Sbjct: 60 CKKFNVPYEIISLQDEYYKRVVTYAIEELKIGNTPSPDIFCNQRIKFGAFFDKINE-HYD 118 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ TGHY + ++ I+ + D +DQSYFL +++Q+ L FPLGD+ K Sbjct: 119 LIVTGHYAKI-----ENKNDHYILKQAKDKIKDQSYFLSHLSRKQISKLHFPLGDLLKTE 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258 +R +A+++ L ++ DSQ ICF+ + KY + +K + G L+G+I+ G+ILG HNG Sbjct: 174 IRQIAQKIDLPNKNRKDSQGICFLGKIKYDEFIKY-HLG-ELKGNIIEQETGKILGTHNG 231 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLD--------KNSSRVIVGPRESLEVHRIYLREINW 310 +TIGQR+G+ ++ G P FV D NS + ++ VH+ NW Sbjct: 232 YWFFTIGQRKGIKLSHG-PWFVTEKDIQNNIIYISNSINYLKQGKQQFLVHK-----TNW 285 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + L + KIR + + ++ +D + VD E+ + G++ GQ C+FY Sbjct: 286 INKPLNNGDLS------AKIRHGEKKIKCKIEMLKNDIIKVDLEEKDYGISPGQFCIFYQ 339 Query: 370 SDSNEARVLGGGII 383 D LGG I Sbjct: 340 ED----ECLGGAKI 349 >gi|301107608|ref|XP_002902886.1| tRNA-specific 2-thiouridylase mnmA, putative [Phytophthora infestans T30-4] gi|262098004|gb|EEY56056.1| tRNA-specific 2-thiouridylase mnmA, putative [Phytophthora infestans T30-4] Length = 416 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 120/399 (30%), Positives = 181/399 (45%), Gaps = 46/399 (11%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LLKR GY V GV ++ ++ + + +C + D ++VC+ + + Sbjct: 1 MSGGVDSSVAALLLKRQGYHVTGVYMKNWDPSD-EEGESACPVDSEYVDVQKVCEQLGIE 59 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 + + + + N V P + Y G TP P + CNR +KF +Q+GAD +ATGHY Sbjct: 60 AQMVNLVQSYWNQVFAPCLAGYEEGLTPNPDILCNREIKFKAFTEFAKQIGADCVATGHY 119 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 + L + G +C D +DQSYFL + + ++ FPLG M+K VR +A Sbjct: 120 --AALRPAEKGGPPN-LCAAEDESKDQSYFLSSVDGKAFANVLFPLGGMRKTEVRQIAES 176 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 GL A K DS ICF+ + + D + + +G + G+ + H+G YT+GQ Sbjct: 177 EGLCTATKKDSVGICFIGKRNFADFIHQYIQ--RQDGYFYTVGGEKMHPHHGFTAYTVGQ 234 Query: 267 RRGLGVAMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIYLREINWLGDGLFEDAVV 321 L M FVV K VIV P + + NW+ L + Sbjct: 235 GARL-QGMSAKWFVVGKHKFDHSVIVAEGTRNPALFSDALFASAEQFNWMAGDLPPELRD 293 Query: 322 DG-FKCFVKIRSSQD----PVPVFVQR------------------NDDGVY--------V 350 G +CF ++R QD + + R N++GV V Sbjct: 294 TGRMRCFYRVRYRQDLDKCTISLVSNREARASASKLHDWQPELVANEEGVENGEKIYLRV 353 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389 DF+ + GV QA V Y SD GGG I+ + ++ Sbjct: 354 DFDHPQRGVTPEQALVLYRSD---GLCYGGGPIAAAGQT 389 >gi|320580644|gb|EFW94866.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Pichia angusta DL-1] Length = 399 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 120/384 (31%), Positives = 193/384 (50%), Gaps = 32/384 (8%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVY 74 NP D ++VV+MS GVDSSV A + + +V G+ + ++ R G C D Sbjct: 29 NPND-QIVVSMSSGVDSSVAALMYAKQYKNVKGIFMANWS---PDSRGGVSKCTVESDWE 84 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VT 133 + + +CD I + ++E+ + + V P Y G TP P V CN+ VKF ++ ++ Sbjct: 85 EVQTICDQIGIPCERVNFEKEYWSDVFEPMLEMYRKGLTPNPDVGCNKYVKFGKMIEHLS 144 Query: 134 RQLGAD--VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + D L TGHY R + + R L +DQSY+L + L + P Sbjct: 145 TKFSRDNWWLVTGHYARIMKHRATGESH---LLRAGFLPKDQSYYLSQMPESVLSKILMP 201 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNG 250 +G K VR+LA+ GL DK DSQ +CFV Q G + D + GDIV +G Sbjct: 202 IGHYTKPEVRELAQRYGLVSKDKRDSQGLCFVSQHGNFKDFLDEFLP--PNPGDIVTADG 259 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIVGP---RESLEVHR 302 ++ GRHNG+ + TIGQR G+ + G+P ++ + + +++I+ R + E R Sbjct: 260 RVWGRHNGLWHGTIGQRSGISLPQGDPEMKGVWYISGKNYDKNQLIISKKTDRAAFEKDR 319 Query: 303 IYLREINWLGDGL-FEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVA 360 + + + W+ L F D +D + +++RS + P + V ++ ++ EK + GVA Sbjct: 320 LKVADWQWINSSLDFGD--LDPAELTIQVRSLESPRALRAVVAGNEPEFLLQEKID-GVA 376 Query: 361 SGQACVFYTSDSNEARVLGGGIIS 384 GQ V Y ++ RVLGGGII+ Sbjct: 377 PGQNLVLYKNE----RVLGGGIIA 396 >gi|71897067|ref|NP_001026522.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Gallus gallus] gi|75571355|sp|Q5ZKW0|MTU1_CHICK RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1 gi|53130608|emb|CAG31633.1| hypothetical protein RCJMB04_8p20 [Gallus gallus] Length = 424 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 124/396 (31%), Positives = 181/396 (45%), Gaps = 44/396 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV A+SGGVDS+V A LL+R GY V GV ++ ++ +G+C +D DA RVC Sbjct: 7 RVACAVSGGVDSAVAALLLRRRGYQVTGVFMKNWDP---LDEQGACSVDRDCEDAYRVCQ 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140 +++ + Y + + N V Y G TP P + CN+ +KF+ L LGAD Sbjct: 64 KLDIPFHQVSYVKEYWNEVFSDLLKEYELGRTPNPDIVCNKHIKFNHFLHYAMDNLGADA 123 Query: 141 LATGHYIRSRL-----YVGDDGKRRRIMCRP-------------MDLERDQSYFLFATTQ 182 +ATGHY R+ L + KR R + R DL +DQ++FL +Q Sbjct: 124 IATGHYARTSLEDEEVFQQKHTKRPRELFRNRFEVRNTVKLLQGADLFKDQTFFLSQISQ 183 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKS---------DSQDICFVQQGKYFDVVK 233 L FPLGD+ K VR +A E GL K S +CF+ + + + Sbjct: 184 DALRKTIFPLGDLTKSFVRKIASEHGLHHVLKKKEACTTFPFQSMGVCFIGERNFEKFL- 242 Query: 234 RINAGIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV 292 + G+ V + + +++G H G YTIGQR L G FVV D ++ + V Sbjct: 243 -LEYLEPQPGNFVSIEDKKVMGTHKGWFLYTIGQRARLAGLQGA-WFVVDKDVSTGDIFV 300 Query: 293 GPR-ESLEVHRIYLR--EINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG- 347 P + + R LR ++W+ + + V D +C + R VP + N DG Sbjct: 301 APSTDHPALFRDLLRTNRVHWIAEEPPAELVRDKMMECHFRFRHQMALVPCVLTLNQDGS 360 Query: 348 VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 V+V K + GQ VFY D LG G I Sbjct: 361 VWVTLVKPARALTPGQFAVFYKGDE----CLGSGKI 392 >gi|260947962|ref|XP_002618278.1| hypothetical protein CLUG_01737 [Clavispora lusitaniae ATCC 42720] gi|238848150|gb|EEQ37614.1| hypothetical protein CLUG_01737 [Clavispora lusitaniae ATCC 42720] Length = 407 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 118/380 (31%), Positives = 181/380 (47%), Gaps = 40/380 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 + VAMS GVDSSV AAL V G+ + A+ + + C + D ++VC Sbjct: 46 EIYVAMSSGVDSSVTAALYASKYPHVKGIYM-------ANWSQTAKCTESEWNDVQKVCQ 98 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS------VTRQ 135 I + ++E+ + V +P Y G TP P + CN+ +KF ++ TR+ Sbjct: 99 QIGIPCERVNFEKEYWADVFMPMIEMYENGLTPNPDLGCNKYIKFGKMIEHLSNKYSTRE 158 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LATGHY +R+ G R + + D +DQSY+L +T + ++ PLG Sbjct: 159 KKW-WLATGHY--ARVETAKTGPR---LLKAYDANKDQSYYLASTPSEVFKNVLMPLGHY 212 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQ--QGKYFDVVKRINAGIALEGDIVHLNGQIL 253 K VR LA++ GL A K DSQ +CFV K+ + G+I+ +G+I Sbjct: 213 TKPQVRQLAQDFGLHTASKPDSQGLCFVSPDHSKFRHFLDEFIP--PKPGNIITEDGKIW 270 Query: 254 GRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIV---GPRESLEVHRIYL 305 G H G+ + TIGQ+ G+ + G+P FV +++ +++ G E L + + Sbjct: 271 GTHKGLWHATIGQKSGISMPQGDPQYQGVWFVSEKRIDTNELVIVRGGNNEKLFKSILKV 330 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF--EKSEVGVASGQ 363 + WLGDG A D ++ RS Q+PVP+ D +DF KSE +A GQ Sbjct: 331 CDWEWLGDGELA-ATSDNLH--IQFRSLQEPVPIRSLIMKDKGEIDFHLHKSERAMAPGQ 387 Query: 364 ACVFYTSDSNEARVLGGGII 383 V Y + RVLG G + Sbjct: 388 NVVLY----DGYRVLGSGTL 403 >gi|77412720|ref|ZP_00788963.1| tRNA methyl transferase [Streptococcus agalactiae CJB111] gi|77161229|gb|EAO72297.1| tRNA methyl transferase [Streptococcus agalactiae CJB111] Length = 204 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 88/206 (42%), Positives = 119/206 (57%), Gaps = 7/206 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 ++RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V Sbjct: 6 NIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 63 ADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + V D M R +D +DQ+YFL +Q+QL FPLG ++K Sbjct: 123 YVATGHYAQ----VTRDKNGIVHMLRGVDNNKDQTYFLSQLSQEQLQKTLFPLGHLQKPE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQ 225 VR +A E GL A K DS ICF+++ Sbjct: 179 VRRIAEEAGLATAKKKDSTGICFMEK 204 >gi|262405518|ref|ZP_06082068.1| tRNA methyl transferase [Bacteroides sp. 2_1_22] gi|294646343|ref|ZP_06723990.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides ovatus SD CC 2a] gi|294806678|ref|ZP_06765509.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides xylanisolvens SD CC 1b] gi|262356393|gb|EEZ05483.1| tRNA methyl transferase [Bacteroides sp. 2_1_22] gi|292638298|gb|EFF56669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides ovatus SD CC 2a] gi|294446098|gb|EFG14734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides xylanisolvens SD CC 1b] gi|295086173|emb|CBK67696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides xylanisolvens XB1A] Length = 379 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 112/392 (28%), Positives = 173/392 (44%), Gaps = 73/392 (18%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV++ MSGG DSSV A L GY+VIGVT + Y + GS + + DAR Sbjct: 4 ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFY------ELNGST---EYLEDARN 54 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + H +D E F +I F Y AG TP+PC CN +K+ L + ++G Sbjct: 55 LAERLGIRHITYDAREIFARQIIEYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGI 114 Query: 139 DVLATGHY-----IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +ATGHY + Y+ D ++DQ++FL+ Q L + P+G Sbjct: 115 FYIATGHYAQNIQLNETFYI----------TYAADSDKDQTFFLWGLKQDILNRMLLPMG 164 Query: 194 DMKKESVRDLAREMGL-DIADKSDSQDICF-------------VQQGK------------ 227 D+ K R A E G +A K DS +CF V+ G+ Sbjct: 165 DITKAEARAWAAEHGFRKVATKKDSIGVCFCPMDYRTFLKDWLVRNGQMSVSNSEASINN 224 Query: 228 ----------YFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEP 277 + D ++R G V G + H G YTIGQRRGLG+ + P Sbjct: 225 SQTSGSDKQTWSDRIRR--------GRFVDEKGNFIAWHEGYPFYTIGQRRGLGIHLNRP 276 Query: 278 LFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDP 336 +FV +D + V++ SLE ++L++ N + ++ + VKIR Q+ Sbjct: 277 VFVKEIDPEKNEVMLASLSSLEKTEMWLKDWNLVN----QERTLGRSDIIVKIRYRKQEN 332 Query: 337 VPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 +D ++V + +A GQA FY Sbjct: 333 YGTITVTSDHLLHVQLHEPLTAIAPGQAAAFY 364 >gi|302336036|ref|YP_003801243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Olsenella uli DSM 7084] gi|301319876|gb|ADK68363.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Olsenella uli DSM 7084] Length = 380 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 132/389 (33%), Positives = 180/389 (46%), Gaps = 46/389 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV + MSGGVDS++ AALL G+DV V ++ ++ R C D+ DA RV Sbjct: 4 RVCLGMSGGVDSALAAALLVEQGHDVKAVYMRNWSRDLPGFR---CTWADDLADAERVAV 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 T+ + V+D E ++ V+ +YA G TP P V CN+TVKF GAD + Sbjct: 61 TLGLDLEVWDCERTYKETVVDYLVDAYAHGYTPNPDVMCNQTVKFGAFAERAFAEGADFV 120 Query: 142 ATGHYIR----------------SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 ATGHY R + RR + R D +DQ+YFL+ L Sbjct: 121 ATGHYARVGVAPPMETAPSASAPAPSASAPAPSRRATLFRAADEHKDQTYFLWRVPTGTL 180 Query: 186 CDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQ----GKYFDVVKRINAGIA 240 FP+GD+ K VR + GL + K DS ICF+ + DV+ R Sbjct: 181 ARTLFPVGDIPSKGEVRRMCAARGLGVERKPDSDGICFIGEVGIRSFLLDVLDR------ 234 Query: 241 LEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES-- 297 GDIV G +LGRH+G +T+GQR+GL + G +VV D S+ V V S Sbjct: 235 RPGDIVEWETGTVLGRHDGAFLFTVGQRKGLDLGGGPARYVVTTDTESNVVYVTADRSCP 294 Query: 298 -LEVHRIYLREINWL-GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEK 354 L R+ L ++ W+ G E V V+ R + + P V + DG V VD K Sbjct: 295 ALWCRRLELSDVLWIAGVPPAEGDYV------VRTRHTGELRPAHVMPHADGTVSVDLAK 348 Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGII 383 VA GQ+ V Y + LGGGII Sbjct: 349 PMRAVAPGQSAVIY----DGLVCLGGGII 373 >gi|51598937|ref|YP_073125.1| tRNA-specific 2-thiouridylase MnmA [Borrelia garinii PBi] gi|73920033|sp|Q660I8|MNMA_BORGA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|51573508|gb|AAU07533.1| conserved hypothetical protein [Borrelia garinii PBi] Length = 355 Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 109/369 (29%), Positives = 193/369 (52%), Gaps = 25/369 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ V +SGGVDSS+ + GY I L+++ + S G+C +D+ V Sbjct: 1 MKIAVLLSGGVDSSIALYKVINKGYTNIKCYYLKIWLEDELS-YIGNCPWQEDLNYVEAV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C+ N+ + + ++++ + N V++ G TP P + CN+ +KF + D Sbjct: 60 CNKFNIPYEIINFQKEYYNKVVIYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINE-QYD 118 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ TGHY R ++ +++ + + D +DQSYFL +Q+Q+ L FPLG + K Sbjct: 119 LVVTGHYARIQI-----KEKKFFLKQAKDKIKDQSYFLSHLSQEQMSKLYFPLGTLFKSE 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258 VR +A+ + L D+ DSQ ICF+ + KY + +K + G +G+IV G+I+G HNG Sbjct: 174 VRQIAKSINLPNKDRKDSQGICFLGKIKYNEFIKY-HLG-EKKGNIVEKETGKIIGIHNG 231 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDGL 315 +T+GQRRG+ ++ G P FV+ D + + + E+ + R +L EI+W+ +G+ Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWI-NGM 289 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 D + FK +KIR + ++ ++ + + K + G++ GQ +FY + Sbjct: 290 PSD--FENFK--IKIRHGEKKYSCKLRLITNNLIEIFLNKKDHGISPGQFAIFYKN---- 341 Query: 375 ARVLGGGII 383 LGG I Sbjct: 342 TECLGGAKI 350 >gi|75055053|sp|Q5RB73|MTU1_PONAB RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1 gi|55728489|emb|CAH90987.1| hypothetical protein [Pongo abelii] Length = 422 Score = 157 bits (396), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 123/393 (31%), Positives = 187/393 (47%), Gaps = 45/393 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV A+SGGVDS+V A LL+R GY V GV ++ ++S G C A +D DA RVC Sbjct: 6 HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLD---EHGVCTADKDCEDAYRVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140 +++ + Y + + N V F + Y G TP P + CN+ +KFS LGAD Sbjct: 63 ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122 Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFAT-T 181 +ATGHY R+ L + +++ I + + D + Q++FL + Sbjct: 123 IATGHYARTSLEDEEVFEQKHIKKPEGLFRNRFEVRNAVKLLQAADSFKGQTFFLSQVFS 182 Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV-----KRI 235 Q L FPLG + KE V+ +A E L + K +S +CF+ + + + R Sbjct: 183 QDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRP 242 Query: 236 NAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR 295 I++E + ++LG H G YT+GQR +G + EP +VV D V V PR Sbjct: 243 GHFISIE------DNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVAPR 295 Query: 296 -ESLEVHRIYLR--EINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYV 350 + ++R LR ++W+ + V D +C + R VP + N DG V+V Sbjct: 296 TDHPALYRDLLRTSRVHWIAEEPPAVLVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWV 355 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 ++ +A+GQ VFY D LG G I Sbjct: 356 TAVQAVRALATGQFAVFYKGDE----CLGSGKI 384 >gi|307192441|gb|EFN75657.1| Mitochondrial tRNA-specific 2-thiouridylase 1 [Harpegnathos saltator] Length = 408 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 119/382 (31%), Positives = 185/382 (48%), Gaps = 30/382 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 +VV MSGGVDS+V A LLK G++V GV ++ ++ R + G C D DAR CD Sbjct: 5 IVVGMSGGVDSAVTAFLLKYKGFNVTGVFMKNWDIRDET---GKCMIENDYEDARWTCDR 61 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVL 141 + + D+ + + N V Y G TP P V CN+ +KF +L AD + Sbjct: 62 LRIPLVQVDFVKEYWNEVFSDLVEKYQTGYTPNPDVLCNKYIKFDKFFHFALNKLQADAI 121 Query: 142 ATGHYIRSRL------YVGDDGK-----RRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 ATGHY R+ Y D G RR + + D ++DQ++FL +QQ L F Sbjct: 122 ATGHYARTSFGSYLEDYKADVGTYHLILRRVRLLQAYDRDKDQTFFLSQVSQQTLRRCMF 181 Query: 191 PLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 PLG+ K V+ +A+E L IA K +S ICFV + ++ + GD ++L+ Sbjct: 182 PLGNYLKSHVKTIAKEASLYRIAQKKESMGICFVGKREFQHFISEYIDDKP--GDYINLD 239 Query: 250 -GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYL 305 G I+G+HNGI TIGQR +G + FV D+ +S V+V +L + + Sbjct: 240 SGLIVGKHNGIHKMTIGQRCRIG-GRHKACFVSGKDQETSAVLVVEGTNHPALYTNFLIT 298 Query: 306 REINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVASG 362 ++I+W+ + E +G F C + + + + V+ + +++ + G Sbjct: 299 QDIHWISEEPSELRQSNGVFHCKFRFQHRKPLISCCVYKTSGEHRLFIRLSIPLRAITKG 358 Query: 363 QACVFYTSDSNEARVLGGGIIS 384 Q V Y+ + LGG IIS Sbjct: 359 QYAVLYSGEE----CLGGSIIS 376 >gi|323349485|gb|EGA83709.1| Slm3p [Saccharomyces cerevisiae Lalvin QA23] Length = 417 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 125/396 (31%), Positives = 193/396 (48%), Gaps = 36/396 (9%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVCD 81 V+VAMS GVDSSV AAL + + GV +Q ++ ++ G C +D D RV Sbjct: 29 VIVAMSSGVDSSVAAALFAGEFPNTRGVYMQNWSESQSLDDPGKEPCYERDWRDVNRVAK 88 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTRQLGA 138 +N+ ++E+ + V P Y+ G TP P + CN+ VKF L L G Sbjct: 89 HLNIRVDKVNFEQDYWIDVFEPMLRGYSEGSTPNPDIGCNKFVKFGKLREWLDXKYGTGN 148 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 L TGHY +R+ +GK + R + +DQSY+L L L P+G + K Sbjct: 149 YWLVTGHY--ARVMQEMNGKGLFHLLRSIYRPKDQSYYLSQINSTVLSSLLLPIGHLTKP 206 Query: 199 SVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLNGQ---- 251 VRDLA+ GL A+K DSQ ICFV Q GK+ + +K + GDI+ ++ Q Sbjct: 207 EVRDLAKYAGLPTAEKPDSQGICFVNNSQHGKFKNFLKHYLP--SSPGDIITVDPQSGAK 264 Query: 252 -ILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRV-IVGPRESLEVHRIY 304 GRH+G+ +YTIGQ+ G+ + +P FV ++++ + IV R++ ++ Sbjct: 265 TTWGRHDGLWSYTIGQKVGISMPQADPNYQGTWFVSEKLRDTNEILIVRGRDNPALYSDT 324 Query: 305 LREINWLGDGLFEDAVVDGFK----CFVKIRSSQDPVPV---FVQRNDDG--VYVDFEKS 355 +R N+ G ED ++ F+ ++ RS Q PV + + R+ D + + Sbjct: 325 IRIENFSSLGPRED-TINAFQNTGALTLQFRSLQVPVQIKSCKLNRSADNLDITIHLASK 383 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDA 391 + + GQ+C Y D RVLG G IS +D Sbjct: 384 QRAITPGQSCCLYIDD----RVLGSGPISHVNNNDT 415 >gi|195162397|ref|XP_002022042.1| GL14198 [Drosophila persimilis] gi|194103940|gb|EDW25983.1| GL14198 [Drosophila persimilis] Length = 387 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 121/375 (32%), Positives = 185/375 (49%), Gaps = 27/375 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 +VV MSGGVDS+V A LLK G+ V+GV ++ ++ + G C QD+ DA C Sbjct: 5 IVVGMSGGVDSAVSAHLLKERGHRVMGVFMRNWDEHDEA---GRCSGEQDLKDAEWACQR 61 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--SVTRQLGADV 140 + + +Y + + AV F Y G TP P + CNR +KF DL +LG D Sbjct: 62 LGIELRQVNYVKEYWTAVFSAFLDDYQQGLTPNPDILCNRHIKF-DLFHRHALDKLGYDA 120 Query: 141 LATGHYIRSRL-----YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 +ATGHY R+ L + D G+ R ++ P D +DQ++FL +Q L FPLGD+ Sbjct: 121 VATGHYARNSLGNFLEHRADGGEARLLI--PADTFKDQTFFLAGIPRQALQRTMFPLGDL 178 Query: 196 KKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQIL 253 K V+ LAR +GL +A K +S ICFV + + ++ A + G V ++ G I+ Sbjct: 179 AKNEVKLLARRIGLQRLAHKRESTGICFVGKRDFKSFIREYIA--SKSGQFVDIDSGAIV 236 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 G H GI +T+GQR LG + +P FV + +S+ + V +L I++ NW Sbjct: 237 GSHEGIHQWTVGQRCRLGSFL-QPYFVARKEASSNTIYVAAGHEHPALLSTCIHIEAPNW 295 Query: 311 LG-DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368 L A +C + + ++ V ++ DG + V + + GQ VFY Sbjct: 296 LCVQSQQRLASAGSLRCRFRFQHTKPLVDCCLRSCPDGGFEVLLDMPLRAITPGQYAVFY 355 Query: 369 TSDSNEARVLGGGII 383 ++ LG G I Sbjct: 356 ----DDVACLGAGRI 366 >gi|126338828|ref|XP_001378676.1| PREDICTED: similar to Zona pellucida protein C [Monodelphis domestica] Length = 428 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 124/391 (31%), Positives = 186/391 (47%), Gaps = 40/391 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV A+SGGVDS+V A LL+R GY+V GV ++ +++ G C A +D DA RVC Sbjct: 13 RVACAVSGGVDSAVAALLLRRRGYEVTGVFMRNWDALDEVSGSG-CSADRDCEDAARVCR 71 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 +++ + + + + V F S Y G TP P + CN+ +KF LGAD Sbjct: 72 LLDIPFRQVAFVKEYWHHVFTDFLSEYEKGRTPNPDILCNKHIKFKAFFHYALDCLGADA 131 Query: 141 LATGHYIRSRL-----YVGDDGKRRRIMCRP-------------MDLERDQSYFLFATTQ 182 +ATGHY R+ L + + R R + R DL +DQ++FL Q Sbjct: 132 MATGHYARTSLEDEEVFAQKEEPRPRGLFRNRFEVRNTVKLLQGADLWKDQTFFLSQAPQ 191 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 + L FPLG + K V+ +A E GL + + +S ICF+ GK + Sbjct: 192 EALRRTLFPLGGLTKAFVKKIAAENGLHHVLQRKESMGICFI--GKRHLESFLLQYLQPQ 249 Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP-RESLE 299 G+ V + + ++LG H G +T+GQ +G + +P +VV D S V V P + Sbjct: 250 PGNFVSIEDNKVLGTHQGCFLFTLGQGAKIG-GLRDPWYVVEKDLRSGDVFVAPGPDHPA 308 Query: 300 VHRIYLR--EINWLGD----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDF 352 ++R LR ++W+ + L +D ++D C + R VP + N DG V+V Sbjct: 309 LYRDLLRTGRVHWIAEEPPAPLVQDKMMD---CHFRWRHQMALVPCVLTLNQDGTVWVTA 365 Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGII 383 K +A GQ VFY D LG G I Sbjct: 366 VKPMKALAPGQFAVFYKGDE----CLGSGKI 392 >gi|6320172|ref|NP_010251.1| Slm3p [Saccharomyces cerevisiae S288c] gi|3122982|sp|Q12093|MTU1_YEAST RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1; AltName: Full=Mitochondrial translation optimization protein 2; AltName: Full=Synthetic lethal with MSS4 3 gi|1279683|emb|CAA96456.1| unknown [Saccharomyces cerevisiae] gi|1431012|emb|CAA98591.1| unnamed protein product [Saccharomyces cerevisiae] gi|48478823|gb|AAT44736.1| mitochondrial Mto2p [Saccharomyces cerevisiae] gi|190405047|gb|EDV08314.1| hypothetical protein SCRG_00535 [Saccharomyces cerevisiae RM11-1a] gi|207346911|gb|EDZ73261.1| YDL033Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi|285810996|tpg|DAA11820.1| TPA: Slm3p [Saccharomyces cerevisiae S288c] Length = 417 Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 125/396 (31%), Positives = 193/396 (48%), Gaps = 36/396 (9%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVCD 81 V+VAMS GVDSSV AAL + + GV +Q ++ ++ G C +D D RV Sbjct: 29 VIVAMSSGVDSSVAAALFAGEFPNTRGVYMQNWSESQSLDDPGKEPCYERDWRDVNRVAK 88 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTRQLGA 138 +N+ ++E+ + V P Y+ G TP P + CN+ VKF L L G Sbjct: 89 HLNIRVDKVNFEQDYWIDVFEPMLRGYSEGSTPNPDIGCNKFVKFGKLREWLDEKYGTGN 148 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 L TGHY +R+ +GK + R + +DQSY+L L L P+G + K Sbjct: 149 YWLVTGHY--ARVMQEMNGKGLFHLLRSIYRPKDQSYYLSQINSTVLSSLLLPIGHLTKP 206 Query: 199 SVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLNGQ---- 251 VRDLA+ GL A+K DSQ ICFV Q GK+ + +K + GDI+ ++ Q Sbjct: 207 EVRDLAKYAGLPTAEKPDSQGICFVNNSQHGKFKNFLKHYLP--SSPGDIITVDPQSGAK 264 Query: 252 -ILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRV-IVGPRESLEVHRIY 304 GRH+G+ +YTIGQ+ G+ + +P FV ++++ + IV R++ ++ Sbjct: 265 TTWGRHDGLWSYTIGQKVGISMPQADPNYQGTWFVSEKLRDTNEILIVRGRDNPALYSDT 324 Query: 305 LREINWLGDGLFEDAVVDGFK----CFVKIRSSQDPVPV---FVQRNDDG--VYVDFEKS 355 +R N+ G ED ++ F+ ++ RS Q PV + + R+ D + + Sbjct: 325 MRIENFSSLGPRED-TINAFQNTGALTLQFRSLQVPVQIKSCKLNRSADNLDITIHLASK 383 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDA 391 + + GQ+C Y D RVLG G IS +D Sbjct: 384 QRAITPGQSCCLYIDD----RVLGSGPISHVNNNDT 415 >gi|293364049|ref|ZP_06610785.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma alligatoris A21JP2] gi|292552539|gb|EFF41313.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma alligatoris A21JP2] Length = 372 Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 116/378 (30%), Positives = 176/378 (46%), Gaps = 37/378 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 RVV+ MSGGVDSSV A LLK GY+V+G+ ++ ++S + G+ C QD Sbjct: 5 RVVIGMSGGVDSSVAAYLLKEQGYEVVGLFMRNWDSLLNNDILGNEKITQDICPQEQDYQ 64 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VT 133 DA VC + + + D+ + + V F Y TP P + CN+ +KF+ Sbjct: 65 DALSVCQKLQIPLHRVDFVKEYWQNVFNNFIEEYKKARTPNPDILCNKYIKFNAFAKHAF 124 Query: 134 RQLGADVLATGHY---IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 +L AD +A GHY + RLY + D +DQ+YFL + +QL ++ Sbjct: 125 NELKADYIAMGHYANVVDGRLY------------KAKDENKDQTYFLAQLSHEQLKNVIM 172 Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LN 249 PL +++K +R +A E+ L A K DS ICF+ + + ++ N A EGD+V+ + Sbjct: 173 PLANLEKTQIRKIALELNLATAKKKDSTGICFIGERNFTKFLQ--NYIPAHEGDVVNIIT 230 Query: 250 GQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 Q + +H G YTIGQR+GL + EP +V D + + V P S E +L Sbjct: 231 KQKIAKHIGCFYYTIGQRKGLNLGGNSEPHYVCGHDVLKNILYVAPASSPE----FLDSN 286 Query: 309 NWLGDGL-FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366 + + L + VK R Q + V+ D V + + V GQ V Sbjct: 287 SLIASNLTLNHQNFNKENITVKFRYRQQEIKAIVEFLEDKKVKIIYNSKSQAVTPGQQVV 346 Query: 367 FYTSDSNEARVLGGGIIS 384 Y + LGG II Sbjct: 347 LYEGQ----KCLGGAIIE 360 >gi|151941963|gb|EDN60319.1| conserved protein [Saccharomyces cerevisiae YJM789] gi|256269696|gb|EEU04967.1| Slm3p [Saccharomyces cerevisiae JAY291] gi|259145210|emb|CAY78474.1| Slm3p [Saccharomyces cerevisiae EC1118] gi|323338348|gb|EGA79575.1| Slm3p [Saccharomyces cerevisiae Vin13] Length = 417 Score = 156 bits (394), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 125/396 (31%), Positives = 193/396 (48%), Gaps = 36/396 (9%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVCD 81 V+VAMS GVDSSV AAL + + GV +Q ++ ++ G C +D D RV Sbjct: 29 VIVAMSSGVDSSVAAALFAGEFPNTRGVYMQNWSESQSLDDPGKEPCYERDWRDVNRVAK 88 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTRQLGA 138 +N+ ++E+ + V P Y+ G TP P + CN+ VKF L L G Sbjct: 89 HLNIRVDKVNFEQDYWIDVFEPMLRGYSEGSTPNPDIGCNKFVKFGKLREWLDEKYGTGN 148 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 L TGHY +R+ +GK + R + +DQSY+L L L P+G + K Sbjct: 149 YWLVTGHY--ARVMQEMNGKGLFHLLRSIYRPKDQSYYLSQINSTVLSSLLLPIGHLTKP 206 Query: 199 SVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLNGQ---- 251 VRDLA+ GL A+K DSQ ICFV Q GK+ + +K + GDI+ ++ Q Sbjct: 207 EVRDLAKYAGLPTAEKPDSQGICFVNNSQHGKFKNFLKHYLP--SSPGDIITVDPQSGAK 264 Query: 252 -ILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRV-IVGPRESLEVHRIY 304 GRH+G+ +YTIGQ+ G+ + +P FV ++++ + IV R++ ++ Sbjct: 265 TTWGRHDGLWSYTIGQKVGISMPQADPNYQGTWFVSEKLRDTNEILIVRGRDNPALYSDT 324 Query: 305 LREINWLGDGLFEDAVVDGFK----CFVKIRSSQDPVPV---FVQRNDDG--VYVDFEKS 355 +R N+ G ED ++ F+ ++ RS Q PV + + R+ D + + Sbjct: 325 IRIENFSSLGPRED-TINAFQNTGALTLQFRSLQVPVQIKSCKLNRSADNLDITIHLASK 383 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDA 391 + + GQ+C Y D RVLG G IS +D Sbjct: 384 QRAITPGQSCCLYIDD----RVLGSGPISHVNNNDT 415 >gi|206603442|gb|EDZ39922.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase 1 [Leptospirillum sp. Group II '5-way CG'] Length = 361 Score = 156 bits (394), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 110/373 (29%), Positives = 184/373 (49%), Gaps = 33/373 (8%) Query: 25 VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG----------SCCAGQDVY 74 + +SGG+DS+V A LLK G+DV G +++++ A + G +CC V Sbjct: 1 MGLSGGIDSTVSALLLKEAGFDVYGAIVEIWSENSAGGQSGDEREKPWFERACCHLPMV- 59 Query: 75 DARRVCDT-INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 + +C+ +++ + D ++ F+ ++ F Y G TP PC DCN +K L+ Sbjct: 60 --KFLCEEYLHIPYVRIDQKQNFQKKIVDVFREGYHNGVTPNPCTDCNAEIKIKTLIDWA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRI--MCRPMDLERDQSYFLFATTQQQLCDLRFP 191 Q +ATGHY R+ V R R+ + + +D ++DQSYFL + L + FP Sbjct: 118 EQQKISYVATGHYARNHYSV-----RNRLWGIAQALDRKKDQSYFLSRVPEHVLRKVLFP 172 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR-INAGIALEGDIVHLNG 250 LG K+ VR+ AR + + + ++ + CF+ +KR A + ++ +NG Sbjct: 173 LGHWTKDKVREFARSKKIPVEEMVENMEACFLSAKNVTSFLKREEEAHSSGNWNVTDING 232 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 + +G I T GQR+G+GVA E ++V +D + VI+G ++ + +R+ Sbjct: 233 EKIGEIPTGIGLTKGQRKGIGVANSERIYVKKVDVQNKVVIMGSKKDILNRNFRIRDP-- 290 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 LG LF+ + FVK RS + VP +++ D + + GV GQ VFY Sbjct: 291 LGP-LFQKKITGNL--FVKFRSVMEAVPC-IEKGD--LRFELSNENDGVTPGQIAVFY-- 342 Query: 371 DSNEARVLGGGII 383 +E VLG GI+ Sbjct: 343 -DDEQMVLGSGIL 354 >gi|207093038|ref|ZP_03240825.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori HPKX_438_AG0C1] Length = 260 Score = 156 bits (394), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 96/278 (34%), Positives = 151/278 (54%), Gaps = 24/278 (8%) Query: 111 GETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170 G+TP PC CN +KF L +LG + +ATGHY R + + + + +D Sbjct: 1 GQTPNPCALCNPLMKFGLALDHALKLGCEKIATGHYARVK-----EIDKVSYIQEALDKT 55 Query: 171 RDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE----MGLDIADKSDSQDICFVQQG 226 +DQSYFL+A + + L FPLGD+ K+ ++ LA +G + +SQ+ICFV++ Sbjct: 56 KDQSYFLYALEHEVIAKLVFPLGDLLKKDIKPLALNAMPFLG-TLETYKESQEICFVEKS 114 Query: 227 KYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDK 285 Y D +K+ + + EG + +L G+I+G H G + YTIG+R+G + EP FVV +D Sbjct: 115 -YIDTLKK-HVEVEKEGVVKNLQGEIIGTHKGYMQYTIGKRKGFSIKGALEPHFVVGIDA 172 Query: 286 NSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND 345 + ++VG +E L H + + + + D F+ + F+K R PV FV D Sbjct: 173 KKNELVVGKKEDLATHSLKAQNKSLMKD--FKSG-----EYFIKARYRSVPVKAFVSLKD 225 Query: 346 DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 + + V+F++ GVA GQA V Y D +LGGG+I Sbjct: 226 EVIEVEFKEPFYGVAKGQALVVYQDDI----LLGGGVI 259 >gi|195130901|ref|XP_002009889.1| GI15611 [Drosophila mojavensis] gi|193908339|gb|EDW07206.1| GI15611 [Drosophila mojavensis] Length = 380 Score = 155 bits (393), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 116/386 (30%), Positives = 192/386 (49%), Gaps = 26/386 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV +SGGVDS+V A LLK G++V+GV ++ ++ + G C QD+ DA C Sbjct: 5 VVVGISGGVDSAVSAHLLKERGFNVLGVFMRNWDEHDEA---GRCSGEQDLKDAEWACRR 61 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--SVTRQLGADV 140 +N+ +Y +++ +V F Y G TP P + CN+ +KF DL + L D Sbjct: 62 LNIELRQVNYVKQYWTSVFSQFLDDYQQGLTPNPDILCNKHIKF-DLFHQHALQTLQYDA 120 Query: 141 LATGHYIRSRL-----YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 +ATGHY R+ L + G + P D +DQ++FL Q L FPLG + Sbjct: 121 IATGHYARNSLGDFLEHAGSQMTEDVRLLIPADTFKDQTFFLAGIAQAALRRTMFPLGGL 180 Query: 196 KKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQIL 253 KK +V++LAR +GL +A+K +S ICFV + + ++ + G+ V ++ G+I+ Sbjct: 181 KKTAVKELARRIGLQRLAEKRESTGICFVGKRDFKAFIREYIT--SKPGNFVDIDSGRIV 238 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 G H G+ +T+GQR L + +P FV D S+ + V +L RI++ +NW Sbjct: 239 GTHEGVHQWTVGQRCRLSSYL-QPYFVARKDAASNIIYVAAGHEHPALHSTRIHIDAVNW 297 Query: 311 LGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 L + +G +C + + ++ V ++ + V + + GQ VFY Sbjct: 298 LCSRARQQLATEGSLRCRFRFQHTKPLVDCQLRPFE----VQLDAPLRAITPGQYAVFYD 353 Query: 370 SDS--NEARVLGGGIISGSKRSDAVE 393 + AR+L G + ++ A+E Sbjct: 354 DVACLGAARILHGEPLQCLEQQVAME 379 >gi|114794425|pdb|2HMA|A Chain A, The Crystal Structure Of Trna (5-Methylaminomethyl-2- Thiouridylate)-Methyltransferase Trmu From Streptococcus Pneumoniae Length = 376 Score = 155 bits (393), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 122/365 (33%), Positives = 179/365 (49%), Gaps = 25/365 (6%) Query: 36 VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEER 95 A LLK GYDVIG+ + ++ + G C A +D D V D I + +Y ++E+ Sbjct: 25 TALLLKEQGYDVIGIFXKNWDD---TDENGVCTATEDYKDVVAVADQIGIPYYSVNFEKE 81 Query: 96 FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGD 155 + + V F + Y AG TP P V CN+ +KF L LGAD +ATGHY +R+ + Sbjct: 82 YWDRVFEYFLAEYRAGRTPNPDVXCNKEIKFKAFLDYAITLGADYVATGHY--ARVARDE 139 Query: 156 DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKS 215 DG + R +D +DQ+YFL +Q+QL FPLG ++K VR LA E GL A K Sbjct: 140 DGTVHXL--RGVDNGKDQTYFLSQLSQEQLQKTXFPLGHLEKPEVRRLAEEAGLSTAKKK 197 Query: 216 DSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM- 274 DS ICF+ + + + + N A G ++G+ G H G+ YTIGQR GLG+ Sbjct: 198 DSTGICFIGEKNFKNFLS--NYLPAQPGRXXTVDGRDXGEHAGLXYYTIGQRGGLGIGGQ 255 Query: 275 ----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCF 327 P FVV D + + + VG +SL + ++++ + E + +C Sbjct: 256 HGGDNAPWFVVGKDLSKNILYVGQGFYHDSLXSTSLEASQVHFTREXPEEFTL----ECT 311 Query: 328 VKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387 K R Q V V + V F + + + GQA VFY + LGGG+I + Sbjct: 312 AKFRYRQPDSKVTVHVKGEKTEVIFAEPQRAITPGQAVVFYDGE----ECLGGGLIDNAY 367 Query: 388 RSDAV 392 R V Sbjct: 368 RDGQV 372 >gi|224533363|ref|ZP_03673957.1| tRNA-methyltransferase [Borrelia burgdorferi CA-11.2a] gi|224513528|gb|EEF83885.1| tRNA-methyltransferase [Borrelia burgdorferi CA-11.2a] Length = 355 Score = 155 bits (393), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 108/370 (29%), Positives = 191/370 (51%), Gaps = 27/370 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ V +SGGVDSSV + + GY I L+++ + S G+C +D+ + Sbjct: 1 MKIAVLLSGGVDSSVALYRIIKKGYSNIKCYYLKIWVEDELS-YIGNCPWQEDLNYVEAI 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGA 138 C+ NV + + ++++ + N V+ G TP P + CN+ +KF + Q Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQY-- 117 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ TGHY + ++ + + ++ + D +DQSYFL +Q+Q+ L FPLG + K Sbjct: 118 DLVVTGHYAKIQI-----KESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKS 172 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR +A+ + L D+ DSQ ICF+ + KY + +K + G +G+I+ G+I+G HN Sbjct: 173 EVRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIK-YHLG-EKKGNIIEKETGKIIGIHN 230 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDG 314 G +T+GQRRG+ ++ G P FV+ D + + + E+ + R +L EI+W+ D Sbjct: 231 GYWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWIND- 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + FK +KIR + ++ ++ + + K + G++ GQ +FY + Sbjct: 289 --TPTNFENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN--- 341 Query: 374 EARVLGGGII 383 LGG I Sbjct: 342 -TECLGGAKI 350 >gi|224532293|ref|ZP_03672925.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia valaisiana VS116] gi|224511758|gb|EEF82164.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia valaisiana VS116] Length = 355 Score = 155 bits (393), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 110/370 (29%), Positives = 191/370 (51%), Gaps = 27/370 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ V +SGGVDSSV + GY I L+++ + S G+C +D+ V Sbjct: 1 MKIAVLLSGGVDSSVALYKIINKGYTNIKCYYLKIWLEDELS-YIGNCPWQEDLNYIEAV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C+ NV + + ++++ + N V+ G TP P + CN+ +KF + D Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTLEELKNGNTPSPDIFCNQRIKFGAFFEKINE-QYD 118 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ TGHY + + ++ ++ + D +DQSYFL +Q+Q+ L FPLG + K Sbjct: 119 LVVTGHYAKIQA-----KEKIFLLKQAKDKIKDQSYFLSHLSQKQMSKLCFPLGTLLKSE 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258 VR +A+ + L D+ DSQ ICF+ + KY + +K + G +G+I+ G+I+G HNG Sbjct: 174 VRQIAKSINLPNKDRKDSQGICFLGKIKYNEFIKY-HLG-EEKGNIIEKETGKIMGIHNG 231 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDGL 315 +T+GQRRG+ ++ G P FV+ D + + V E+ + R +L EI+W+ D Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYVSHNENYLKQAKRKFLVHEIHWIND-- 288 Query: 316 FEDAVVDGFKCF-VKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + FK F +KIR + ++ +++ + + K + G++ GQ +FY + Sbjct: 289 ----IPQDFKNFKIKIRHGEKKYSCKLKLISNNLIEISLNKEDHGISPGQFAIFYKN--- 341 Query: 374 EARVLGGGII 383 + LGG I Sbjct: 342 -TKCLGGAKI 350 >gi|296192066|ref|XP_002743906.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Callithrix jacchus] Length = 421 Score = 155 bits (393), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 124/396 (31%), Positives = 186/396 (46%), Gaps = 52/396 (13%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV A+SGGVDS+V A LLKR GY V GV ++ ++ G C A +D DA RVC Sbjct: 6 HVVCALSGGVDSAVAALLLKRRGYQVTGVFMKNWD---LLDEHGVCAADKDCEDAYRVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140 +++ Y + + N V F + Y G TP P + CN+ +KFS LGAD Sbjct: 63 ILDLPFRQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIICNKHIKFSCFFRYAVDNLGADA 122 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLER-------------------DQSYFLFATT 181 +ATGHY R+ G+ +++ I RP L R DQ++FL + Sbjct: 123 IATGHYARTSQEDGEVFQQKHIK-RPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVS 181 Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV-----KRI 235 Q L FPLG + K+ V+ +A E L + K +S +CF+ + + + R Sbjct: 182 QDALRRTIFPLGGLTKDFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLPSRP 241 Query: 236 NAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR 295 I++E + ++LG H G YT+GQR +G + P +VV D V V PR Sbjct: 242 GQFISIE------DHKVLGTHKGWFLYTLGQRANIG-GLRAPWYVVEKDSAKGDVFVAPR 294 Query: 296 -ESLEVHRIYLR--EINWLGD----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG- 347 + ++R LR ++W+ + L D +++ C + R VP + N DG Sbjct: 295 LDHPALYRDLLRTSRVHWITEEPPAALVRDKMME---CHFRFRHQMALVPCVLTLNQDGT 351 Query: 348 VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 V+V ++ +A+GQ VFY LG G I Sbjct: 352 VWVTAVQAVHALATGQFAVFYKG----GECLGSGKI 383 >gi|332179300|gb|AEE14989.1| tRNA methyl transferase [Thermodesulfobium narugense DSM 14796] Length = 337 Score = 155 bits (393), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 112/367 (30%), Positives = 184/367 (50%), Gaps = 32/367 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + RV+V +SGG+DS A LL+ G+DVI + ++L+++ + R A+ + Sbjct: 2 NKRVIVGISGGIDSFYTAFLLRNSGFDVICLYIKLFDNHETFFR------------AKML 49 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + V +D + F+ V+ + G TP PC CN +KF L + D Sbjct: 50 GELLGVKFEFYDAIKEFKKEVVDRSINMTLLGYTPNPCAFCNMKIKFRILEKIRSDFNYD 109 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++TGHY++ DD R + R D ++DQSYFL L + FPLGD K+ Sbjct: 110 YISTGHYVKI---FHDDITR---IFRGFDEKKDQSYFLALVPSIYLKNAIFPLGDFTKKY 163 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 V+ + +E D S SQD+CFV++G Y +++ I G+ + G ++ +++ H G Sbjct: 164 VKKVMQEKYSFWKDISSSQDLCFVKKG-YKKLIQDI-CGVKV-GKFLY-KDKVVANHLGS 219 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YTIG+ RGLG L+V L+ + V + RE I + ++N+ + Sbjct: 220 YLYTIGESRGLGHKEPVKLYVESLNHEKNEVYLNTREFCYKSSIIVTDLNFFNE------ 273 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + D +C V+IR PV +Q N++ ++V F + GQ FY+ D+ E +LG Sbjct: 274 LPD--RCLVQIRYQAKPVICDIQFNENKLHVSFHEKVFAPTPGQIASFYSLDNRE--LLG 329 Query: 380 GGIISGS 386 GGII G+ Sbjct: 330 GGIIIGT 336 >gi|26554279|ref|NP_758213.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase [Mycoplasma penetrans HF-2] gi|30173413|sp|Q8CXQ3|MNMA_MYCPE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|26454288|dbj|BAC44617.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase [Mycoplasma penetrans HF-2] Length = 370 Score = 155 bits (393), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 120/378 (31%), Positives = 182/378 (48%), Gaps = 32/378 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--------NSRKASKRKGSCCAGQDV 73 +V+V +SGGVDSSV A LLK GYDV+GV +Q + N+ + +C A D Sbjct: 3 KVIVGISGGVDSSVSAYLLKLRGYDVMGVFMQNWDPYINKESNNDAIKSKLDTCEAEYDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 A +VC + + ++ + + + V PF Y G TP P + CN+ +KF Sbjct: 63 QIASKVCQRLGIKLERINFIKEYWDMVFEPFLDEYKKGLTPNPDILCNKYIKFGAFHKYC 122 Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 D +ATGHY R + + D+E+DQ+YFL + Q QL FPL Sbjct: 123 FENFDCDYIATGHYADVRF---NQANNIYELLEAKDIEKDQTYFLCSLNQSQLSKSIFPL 179 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQ 251 D+ K+ VR++A ++GLD DK DS ICF+ + + + + N G I+ ++ + Sbjct: 180 ADLTKKEVREIANKIGLDNWDKKDSTGICFIGERNFKNFLH--NYIDKKPGKIIDIDTSK 237 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEP-LFVVYLDKNSSRVIVGPRES----LEVHRIYLR 306 +G H GI YTIGQR+GL + FV D +++ + V ES L Sbjct: 238 EVGTHEGIHFYTIGQRKGLNLGGNSSRYFVCKKDISNNILYVTSNESKLKNLSSVVATCS 297 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQAC 365 NW+G V + K ++IR S++ + F D+ V +F+ EV ++ GQ Sbjct: 298 YFNWIG------YVPNNNKVEIRIRHSKNKINGHFKILKDNVVQFEFDSPEV-ISPGQYI 350 Query: 366 VFYTSDSNEARVLGGGII 383 V Y + LGGG I Sbjct: 351 VAYQ----KGVCLGGGPI 364 >gi|193216582|ref|YP_001999824.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma arthritidis 158L3-1] gi|229486415|sp|B3PM68|MNMA_MYCA5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|193001905|gb|ACF07120.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma arthritidis 158L3-1] Length = 370 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 118/375 (31%), Positives = 188/375 (50%), Gaps = 32/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 RVV+ MSGGVDSSV A LL++ GY+V+G+ ++ ++S + G+ C QD Sbjct: 4 RVVLGMSGGVDSSVCAYLLQQQGYEVVGLFMRNWDSFLNNDFLGNEAISQDVCPQEQDYA 63 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133 DA+ V +N+ Y D+ + + + V Y G TP P + CN+ +KF+ V Sbjct: 64 DAKEVAKQLNIPLYRVDFIKEYWDHVFSYLIEEYKIGRTPNPDIFCNKYIKFNFFAQVAF 123 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + AD +A GHY ++G+ + + D +DQSYFL + +QL + FPL Sbjct: 124 SKYQADFIAMGHYAYC-----ENGE----LFKAKDDSKDQSYFLAQLSNEQLKKVIFPLA 174 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252 ++ K+ VR++A+ + L A K DS ICF+ + K+ ++ N A G I+ + Q+ Sbjct: 175 NLTKQEVREIAKNLNLATATKKDSTGICFIGERKFTKFLE--NYIPAQPGKIIDIATKQV 232 Query: 253 LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 +G H G + YTIGQR+GL + +P FVV + + V + E YL + Sbjct: 233 VGSHIGTMYYTIGQRKGLNLGGFSKPYFVVGHNLEKKVLYVANEDFPE----YLLSDKLI 288 Query: 312 GDGLFEDAV-VDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYT 369 G + A D K R Q +P+ ++ + + V + +E V GQ V Y Sbjct: 289 AIGFNQIAYKFDTNNLSAKFRYRQKDIPIKLKLLANSEIEVSYNDTE-AVTPGQEIVIY- 346 Query: 370 SDSNEARVLGGGIIS 384 D N +V+GG II+ Sbjct: 347 -DGN--KVVGGAIIN 358 >gi|282856175|ref|ZP_06265458.1| tRNA methyl transferase [Pyramidobacter piscolens W5455] gi|282585934|gb|EFB91219.1| tRNA methyl transferase [Pyramidobacter piscolens W5455] Length = 346 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 178/370 (48%), Gaps = 39/370 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +++V +SGGVDS++ A L+ GYDV L L + G+D D R+ Sbjct: 4 KILVGVSGGVDSALSALRLRDLGYDVTAAHLILKD-------------GEDPTDRLRLER 50 Query: 82 TI-NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +V + D RF V+ PF +Y G TP PCV CN +KF L + +LG D Sbjct: 51 LARHVPVHELDCRARFCERVVRPFLDAYRKGLTPNPCVICNAALKFRALFELADRLGIDK 110 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES- 199 +ATGHY R V G+R I D +DQ+Y L + L L FPL + + ++ Sbjct: 111 VATGHYAR----VLKRGRRWAIA--RTDSPKDQTYMLCRLPHEWLSRLCFPLSEERSKTG 164 Query: 200 -VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE----GDIVHLNGQILG 254 +LA +G + + DSQ ICF++ G + + + +A E G +V +G+ LG Sbjct: 165 VKNELASRLGAERLAQGDSQGICFLEGG---SLERFLEDHLAAEERHIGRMVGHDGEDLG 221 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H G+I YT GQRRGLG++ G P FV D S+R+++ V IY W Sbjct: 222 PHKGLIFYTEGQRRGLGLSRG-PWFVARRDFASNRLLLSHGTEATVGTIYFENARW---- 276 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + V G C V+ PVP +D G V+ ++ V+ GQA V Y D Sbjct: 277 --QQEVRAGQDCLVQYCYRARPVPGRLADCHDGGGTVELQEPAGSVSIGQALVLY--DVA 332 Query: 374 EARVLGGGII 383 E +LGGG I Sbjct: 333 ERVLLGGGFI 342 >gi|255728973|ref|XP_002549412.1| hypothetical protein CTRG_03709 [Candida tropicalis MYA-3404] gi|240133728|gb|EER33284.1| hypothetical protein CTRG_03709 [Candida tropicalis MYA-3404] Length = 426 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 115/385 (29%), Positives = 187/385 (48%), Gaps = 39/385 (10%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P+D ++VAMS GVDSSV AAL ++ +V G+ + A+ + + C +D D + Sbjct: 64 PED-HIIVAMSSGVDSSVCAALF-QNYKNVHGIYM-------ANWSQNATCTERDWRDVQ 114 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL- 136 +VC +N+ ++E + N V +P Y G TP P + CN+ VKF L Q Sbjct: 115 KVCQDLNIDCERVNFEHEYWNDVFLPMIEKYERGLTPNPDIGCNKYVKFGKLAEYLEQKY 174 Query: 137 --GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 L TGHY R + + + R + +DQSY+L + L P+G Sbjct: 175 HGKKWWLVTGHYARV---MKHNATGEYHLLRGLSSRKDQSYYLSSIPASILSKTILPIGH 231 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFV--QQGKYFDVVKRINAGIALEGDIVHLNGQI 252 K +R+LA++ L A K DSQ +CFV Q + D + A GDIV +G + Sbjct: 232 YTKPEIRELAKKFNLHTASKPDSQGLCFVNPNQSNFRDFLNEYIP--ANPGDIVTEDGTV 289 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLF--VVY-----LDKNSSRVIVG---PRESLEVHR 302 G+H G+ + TIGQR + + G+P + V + ++KN ++ G P+ +V Sbjct: 290 WGKHKGLWHATIGQRSTVSMPQGDPKYQGVWFVSEKNIEKNQLVIVKGTDNPKLFKQV-- 347 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVAS 361 + + ++ W+ ++ V+ + S PVPV V +N D + ++ EK +A Sbjct: 348 VEITDLEWIQP---KEKVLAMDNVQFQYHSLTTPVPVKVIKNKGDKLIIELEKPARALAP 404 Query: 362 GQACVFYTSDSNEARVLGGGIISGS 386 GQ + Y N +VLGGG+I+ + Sbjct: 405 GQGGILY----NGNQVLGGGMINKT 425 >gi|50556890|ref|XP_505853.1| YALI0F25069p [Yarrowia lipolytica] gi|49651723|emb|CAG78664.1| YALI0F25069p [Yarrowia lipolytica] Length = 399 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 121/385 (31%), Positives = 182/385 (47%), Gaps = 40/385 (10%) Query: 18 PKDMRVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 P D V VAMS GVDSSV AAL+ +R V GV ++ ++ S CA D D Sbjct: 35 PND-HVYVAMSAGVDSSVTAALMAERYKGRVTGVFMRNWSP-------DSKCAEADWNDV 86 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-- 134 ++VC I++ E+ + V P Y G TP P V CNR +KF L + Sbjct: 87 QQVCAHIDIPAVNLSLEKEYWLEVFEPMLERYRQGLTPNPDVSCNRYIKFGSLKHRLKDR 146 Query: 135 -----QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 G LATGHY R V D + RP L +DQSY+L + L ++ Sbjct: 147 HENSGMEGDWWLATGHYAR----VMTDESGTPGLFRPKHLAKDQSYYLSSVNSDSLRNVM 202 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVH 247 FPL D K +R++A L +A K DSQ +CFV Q K+ D + + G+++ Sbjct: 203 FPLSDYLKPEIREMAHAYKLHVASKPDSQGLCFVSQDQRKFRDFLSDYIS--TTPGNVIT 260 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIV---GPRESLE 299 G+++G+HNG+ N T+GQ+ G+ + G P FV + +++ +++ G SL Sbjct: 261 EEGEVVGQHNGLWNATVGQKSGICLPQGNPKYRGSWFVKEKNIDTNELVIVKGGNHPSLF 320 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVG 358 I + +WLG + A + G ++ RS +PV + + + + + Sbjct: 321 SSNIKAKYFSWLGT---KPADLSGMNLTIQFRSLMEPVAITNLAIEGEDIAIRTAVPVRA 377 Query: 359 VASGQACVFYTSDSNEARVLGGGII 383 V+ GQ V Y D RVLG G+I Sbjct: 378 VSPGQNLVLYHED----RVLGCGVI 398 >gi|198467713|ref|XP_002134614.1| GA22395 [Drosophila pseudoobscura pseudoobscura] gi|198149375|gb|EDY73241.1| GA22395 [Drosophila pseudoobscura pseudoobscura] Length = 387 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 120/375 (32%), Positives = 185/375 (49%), Gaps = 27/375 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 +VV MSGGVDS+V A LL+ G+ V+GV ++ ++ + G C QD+ DA C Sbjct: 5 IVVGMSGGVDSAVSAHLLRERGHRVMGVFMRNWDEHDEA---GRCSGEQDLKDAEWACQR 61 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--SVTRQLGADV 140 + + +Y + + AV F Y G TP P + CNR +KF DL +LG D Sbjct: 62 LGIELRQVNYVKEYWTAVFSAFLDDYQQGLTPNPDILCNRHIKF-DLFHRHALDKLGYDA 120 Query: 141 LATGHYIRSRL-----YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 +ATGHY R+ L + D G+ R ++ P D +DQ++FL +Q L FPLGD+ Sbjct: 121 VATGHYARNSLGNFLEHRADGGEARLLI--PADTFKDQTFFLAGIPRQALQRTMFPLGDL 178 Query: 196 KKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQIL 253 K V+ LAR +GL +A K +S ICFV + + ++ A + G V ++ G I+ Sbjct: 179 AKNEVKLLARRIGLQRLAHKRESTGICFVGKRDFKSFIREYIA--SKSGQFVDIDSGAIV 236 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 G H GI +T+GQR LG + +P FV + +S+ + V +L I++ NW Sbjct: 237 GSHEGIHQWTVGQRCRLGSFL-QPYFVARKEASSNTIYVAAGHEHPALLSTCIHIEAPNW 295 Query: 311 LG-DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368 L A +C + + ++ V ++ DG + V + + GQ VFY Sbjct: 296 LCVQSQQRLASAGSLRCRFRFQHTKPLVDCCLRSCPDGGFEVLLDIPLRAITPGQYAVFY 355 Query: 369 TSDSNEARVLGGGII 383 ++ LG G I Sbjct: 356 ----DDVACLGAGRI 366 >gi|323305735|gb|EGA59475.1| Slm3p [Saccharomyces cerevisiae FostersB] Length = 417 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 125/396 (31%), Positives = 192/396 (48%), Gaps = 36/396 (9%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVCD 81 V+VAMS GVDSSV AAL + + GV +Q ++ ++ G C +D D RV Sbjct: 29 VIVAMSSGVDSSVAAALFAGEFPNTRGVYMQNWSESQSLDDPGKEPCYERDWRDVNRVAK 88 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTRQLGA 138 +N+ ++E+ + V P Y+ G TP P + CN+ VKF L L G Sbjct: 89 HLNIRVDKVNFEQDYWIDVFEPMLRGYSEGSTPNPDIGCNKFVKFGXLREWLDEKYGTGN 148 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 L TGHY +R+ +GK + R + +DQSY+L L L P+G + K Sbjct: 149 YWLVTGHY--ARVMQEMNGKGLFHLLRSIYRPKDQSYYLSQINSTVLSSLLLPIGHLTKP 206 Query: 199 SVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLNGQ---- 251 VRDLA+ GL A+K DSQ ICFV Q GK+ + +K + GDI+ ++ Q Sbjct: 207 EVRDLAKYAGLPTAEKPDSQGICFVNNSQHGKFKNFLKHYLP--SSPGDIITVDPQSGAK 264 Query: 252 -ILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRV-IVGPRESLEVHRIY 304 GRH+G+ +YTIGQ+ G+ + +P FV ++++ + IV R++ ++ Sbjct: 265 TTWGRHDGLWSYTIGQKVGISMPQADPNYQGTWFVSEKLRDTNEILIVRGRDNPALYSDT 324 Query: 305 LREINWLGDGLFEDAVVDGFK----CFVKIRSSQDPVPV---FVQRNDDG--VYVDFEKS 355 R N+ G ED ++ F+ ++ RS Q PV + + R+ D + + Sbjct: 325 XRIENFSSLGPRED-TINAFQNTGALTLQFRSLQVPVQIKSCKLNRSADNLDITIHLASK 383 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDA 391 + + GQ+C Y D RVLG G IS +D Sbjct: 384 QRAITPGQSCCLYIDD----RVLGSGPISHVNNNDT 415 >gi|312148210|gb|ADQ30869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia burgdorferi JD1] Length = 355 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 108/370 (29%), Positives = 190/370 (51%), Gaps = 27/370 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ V +SGGVDSSV + GY I L+++ + S G+C +D+ + Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDELS-YIGNCPWQEDLNYVEAI 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGA 138 C+ NV + + ++++ + N V+ G TP P + CN+ +KF + Q Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQY-- 117 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ TGHY + ++ + + ++ + D +DQSYFL +Q+Q+ L FPLG + K Sbjct: 118 DLVVTGHYAKIQI-----KESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKS 172 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR +A+ + L D+ DSQ ICF+ + KY + +K + G +G+I+ G+I+G HN Sbjct: 173 EVRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIK-YHLG-EKKGNIIEKETGKIIGIHN 230 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDG 314 G +T+GQRRG+ ++ G P FV+ D + + + E+ + R +L EI+W+ D Sbjct: 231 GYWFFTVGQRRGIKLSNG-PWFVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWIND- 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + FK +KIR + ++ ++ + + K + G++ GQ +FY + Sbjct: 289 --TPTNFENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN--- 341 Query: 374 EARVLGGGII 383 LGG I Sbjct: 342 -TECLGGAKI 350 >gi|15595027|ref|NP_212816.1| tRNA-specific 2-thiouridylase MnmA [Borrelia burgdorferi B31] gi|223889488|ref|ZP_03624074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia burgdorferi 64b] gi|226321380|ref|ZP_03796907.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia burgdorferi Bol26] gi|8134738|sp|O51625|MNMA_BORBU RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|2688619|gb|AAC67035.1| conserved hypothetical protein [Borrelia burgdorferi B31] gi|223885174|gb|EEF56278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia burgdorferi 64b] gi|226233176|gb|EEH31928.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia burgdorferi Bol26] Length = 355 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 108/370 (29%), Positives = 190/370 (51%), Gaps = 27/370 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ V +SGGVDSSV + GY I L+++ + S G+C +D+ + Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDELS-YIGNCPWQEDLNYVEAI 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGA 138 C+ NV + + ++++ + N V+ G TP P + CN+ +KF + Q Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQY-- 117 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ TGHY + ++ + + ++ + D +DQSYFL +Q+Q+ L FPLG + K Sbjct: 118 DLVVTGHYAKIQI-----KESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKS 172 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR +A+ + L D+ DSQ ICF+ + KY + +K + G +G+I+ G+I+G HN Sbjct: 173 EVRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIK-YHLG-EKKGNIIEKETGKIIGIHN 230 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDG 314 G +T+GQRRG+ ++ G P FV+ D + + + E+ + R +L EI+W+ D Sbjct: 231 GYWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWIND- 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + FK +KIR + ++ ++ + + K + G++ GQ +FY + Sbjct: 289 --TPTNFENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN--- 341 Query: 374 EARVLGGGII 383 LGG I Sbjct: 342 -TECLGGAKI 350 >gi|170575385|ref|XP_001893218.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Brugia malayi] gi|158600895|gb|EDP37948.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Brugia malayi] Length = 383 Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 125/394 (31%), Positives = 193/394 (48%), Gaps = 60/394 (15%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV A+SGGVDS+V A LLK+ G+DVIGV + N +A + +C D DA +VC+ Sbjct: 6 KVVCAISGGVDSAVSAYLLKKRGFDVIGV--HMVNWDRAEEDSNNCPQSVDEKDAEKVCN 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140 + + YV ++ +++ N + + +Y G T + V CN+T+KF +L AD Sbjct: 64 HLQIPFYVTNFVDKYWNEIFMYLLDNYRKGRTVVSDVLCNKTIKFDRFHKYAFDELQADA 123 Query: 141 LATGHYIRSRLYVGDDGKRR------RIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 +ATGH+ R+ GD + R R++ +D +DQ++FL TQ QL FP+G Sbjct: 124 VATGHFARTSF--GDFLENRLETGLIRLLA-AVDPIKDQTFFLSTLTQSQLRRSMFPVGS 180 Query: 195 MKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFD--VVKRINAGIALEGDIVHLNGQ 251 + K+ VR +A + G+D IA+K +S +CF+ + K FD + + I I DI G+ Sbjct: 181 LTKQQVRQIAIDAGMDEIAEKRESMGLCFIGKRKRFDAFISQYIEPVIGPAKDID--TGK 238 Query: 252 ILGRHNGIINYTIGQRRGL-----GVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRI 303 ++ H GI +YTIG+R + A+G LF LD + + V +L Sbjct: 239 VIFEHKGIHHYTIGKRITMVPDHCQSAVG--LFAAGLDDKTQTLWVCQGSHHPALFAREF 296 Query: 304 YLREINWLGDGLFEDAVVDG--FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV-- 359 + E W+ + F DA V F+C QR + + + E G+ Sbjct: 297 VVEEPVWISECPFGDAGVIKMEFRC---------------QRTHPALLCELTRLEKGLLK 341 Query: 360 ----------ASGQACVFYTSDSNEARVLGGGII 383 A GQ CVFY N++ LGGG I Sbjct: 342 VKPYNPIRAAAPGQICVFY----NDSECLGGGEI 371 >gi|219684476|ref|ZP_03539420.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia garinii PBr] gi|219672465|gb|EED29518.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia garinii PBr] Length = 355 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 111/369 (30%), Positives = 192/369 (52%), Gaps = 25/369 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVT-LQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ V +SGGVDSSV + GY I L+++ + S G+C +D+ V Sbjct: 1 MKIAVLLSGGVDSSVALYKVINKGYTNIKCYYLKIWLEDELS-YIGNCPWQEDLNYVEAV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C+ NV + + ++++ + N V+ G TP P + CN+ +KF + D Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINE-QYD 118 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ TGHY R ++ +++ + + D +DQSYFL +Q+Q+ L FPLG + K Sbjct: 119 LVVTGHYARIQI-----KEKKFFLKQAKDKIKDQSYFLSHLSQEQMSKLCFPLGTLFKSE 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258 VR +A+ + L D+ DSQ ICF+ + KY + +K + G +G+IV G+I+G HNG Sbjct: 174 VRQIAKSINLPNKDRKDSQGICFLGKIKYNEFIK-YHLG-EKKGNIVEKETGKIIGIHNG 231 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDGL 315 +T+GQRRG+ ++ G P FV+ D + + + E+ + R +L EI+W+ +G+ Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWI-NGM 289 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 D + FK +KIR + ++ ++ + + K + G++ GQ +FY + Sbjct: 290 PSD--FENFK--IKIRHGEKKYSCKLRLITNNLIEICLNKKDHGISPGQFAIFYKN---- 341 Query: 375 ARVLGGGII 383 LGG I Sbjct: 342 TECLGGAKI 350 >gi|218249186|ref|YP_002375182.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia burgdorferi ZS7] gi|226704767|sp|B7J2N7|MNMA_BORBZ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|218164374|gb|ACK74435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia burgdorferi ZS7] Length = 355 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 108/370 (29%), Positives = 190/370 (51%), Gaps = 27/370 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ V +SGGVDSSV + GY I L+++ + S G+C +D+ + Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDELS-YIGNCPWQEDLNYVEAI 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGA 138 C+ NV + + ++++ + N V+ G TP P + CN+ +KF + Q Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQY-- 117 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ TGHY + ++ + + ++ + D +DQSYFL +Q+Q+ L FPLG + K Sbjct: 118 DLVVTGHYAKIQI-----KESKFLLKQAKDKIKDQSYFLSHLSQKQISKLYFPLGTLLKS 172 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR +A+ + L D+ DSQ ICF+ + KY + +K + G +G+I+ G+I+G HN Sbjct: 173 EVRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIKY-HLG-EKKGNIIEKETGKIIGIHN 230 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDG 314 G +T+GQRRG+ ++ G P FV+ D + + + E+ + R +L EI+W+ D Sbjct: 231 GYWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWIND- 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + FK +KIR + ++ ++ + + K + G++ GQ +FY + Sbjct: 289 --TPTNFENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN--- 341 Query: 374 EARVLGGGII 383 LGG I Sbjct: 342 -TECLGGAKI 350 >gi|254442923|ref|ZP_05056399.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Verrucomicrobiae bacterium DG1235] gi|198257231|gb|EDY81539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Verrucomicrobiae bacterium DG1235] Length = 360 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 112/374 (29%), Positives = 182/374 (48%), Gaps = 30/374 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +++VAMSGGVDS+V A LLK G+ + G ++ N + G C QD+ DA V + Sbjct: 3 KILVAMSGGVDSAVAALLLKEQGHAIEGAYMK--NWINEDEILGDCPWQQDIEDAAAVAE 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + V + + +R+ ++ + Y +G TP P V CNR +KF L + G D + Sbjct: 61 ALGIPFRVVNLMQEYRSRIVDYLLAGYQSGITPNPDVMCNREIKFGVFLDYALENGFDEV 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + R + + R + D +DQ+YFL Q+ RFP+G + K +R Sbjct: 121 ATGHYAQIR----ETEDQPRAIIEGADPNKDQTYFLAKMRADQVARARFPVGHLLKPELR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHNG 258 +LA+ L A K DSQ ICF+ K D ++ G + D + Q LG+H G Sbjct: 177 ELAQTASLPNAKKKDSQGICFIGNIKMSDFLREYVPDRPGPIIRAD----DDQTLGQHRG 232 Query: 259 IINYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVG----PRESLEVHRIYLREINWL 311 + +TIGQRRG+G+ E VV D + ++V L R + +++ Sbjct: 233 LHYFTIGQRRGIGIPSNTDNEFYVVVGKDIQRNALLVSFEAPTAPGLYSSRCEISSLSYT 292 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTS 370 G+ +D ++ K+R V + R + + + V F++ + +A GQ FY Sbjct: 293 GEPFPDDCRIEA-----KVRYRDPRVAITCHRLSPETIEVTFDQPQRALALGQIIAFYRG 347 Query: 371 DSNEARVLGGGIIS 384 ++LGGG+ + Sbjct: 348 ----PQLLGGGVYT 357 >gi|225551719|ref|ZP_03772662.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia sp. SV1] gi|225371514|gb|EEH00941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia sp. SV1] Length = 355 Score = 154 bits (389), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 110/370 (29%), Positives = 188/370 (50%), Gaps = 27/370 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ V +SGGVDSSV + GY I L+++ + S G+C +D+ + Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDELS-YIGNCPWQEDLNYVEAI 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGA 138 C+ NV + + ++++ + N V+ G TP P + CN+ +KF + Q Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINNQY-- 117 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ TGHY + + + + ++ + D +DQSYFL +Q+QL L FPLG + K Sbjct: 118 DLVVTGHYAKIQ-----RKESKFLLKQAKDKIKDQSYFLSHLSQKQLSKLYFPLGTLLKS 172 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR +A+ + L D+ DSQ ICF+ + KY + +K + G +G+I+ G+I+G HN Sbjct: 173 EVRQIAKSINLPNKDRKDSQGICFLGKIKYNEFIK-YHLG-EKKGNIIEKETGKIIGIHN 230 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDG 314 G +T GQRRG+ ++ G P FV+ D + + + E+ + R +L EI+W+ D Sbjct: 231 GYWFFTAGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWIND- 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + FK +KIR + +Q ++ + + K + G++ GQ +FY + Sbjct: 289 --TPTNFENFK--IKIRHGKKKYSCKLQLITNNLMEISLNKKDQGISPGQFAIFYKN--- 341 Query: 374 EARVLGGGII 383 LGG I Sbjct: 342 -TECLGGAKI 350 >gi|299752841|ref|XP_001832878.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coprinopsis cinerea okayama7#130] gi|298410025|gb|EAU88908.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coprinopsis cinerea okayama7#130] Length = 369 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 121/383 (31%), Positives = 184/383 (48%), Gaps = 39/383 (10%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LL + YD+ V ++ +++R S C +D D +RVC +++ Sbjct: 1 MSGGVDSSVAALLLAQQDYDLSAVFMRNWDTRDESGSDRGCEWEKDWEDVQRVCKKLDIP 60 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT------VKFSDLLSVTRQLGAD- 139 + D + N V P + G TP V CNR +KF LL +L D Sbjct: 61 CSMIDLSREYWNRVFEPSLQQWELGTTPNADVWCNRKAEDNREIKFGALL---ERLPPDS 117 Query: 140 -----VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 ATGHY R G + + + + RP D +DQ+Y+L + ++ L FP+ Sbjct: 118 SGQRPWFATGHYARKTWSEGPNARPK--LVRPADGHKDQTYYLSSISESGLQRALFPINH 175 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVK-RINAGIALEGDIV-HLNGQ 251 ++K VR+LA++ L A + DS ICFV ++ K+ + + N A +G I+ G+ Sbjct: 176 LQKPQVRELAQKHDLHNAQRPDSVGICFVGEKAKFHNFLSCPANYIPAQKGLIIDETTGK 235 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 +LG+H G+ NYTIG+ L G P + K+ S + ESL + I + E W Sbjct: 236 VLGKHQGLWNYTIGEGSRLP---GMPTRMAVSRKDPSTNTIY-HESLYTNVINVPEFTW- 290 Query: 312 GDGLFEDAV------VDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQA 364 ++ D+V +GF+ V R VP V+R+ GV V + E V GQ Sbjct: 291 ---IWSDSVPTELDTPEGFRASVMHRYRMKAVPCTVRRSSGQGVTVQCDDLEQAVTPGQV 347 Query: 365 CVFYTSDSNEARVLGGGIISGSK 387 V Y+ D LG G+I+ S+ Sbjct: 348 AVLYSDD----WCLGCGVIASSE 366 >gi|111115515|ref|YP_710133.1| tRNA-specific 2-thiouridylase MnmA [Borrelia afzelii PKo] gi|122956331|sp|Q0SMH1|MNMA_BORAP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|110890789|gb|ABH01957.1| hypothetical protein BAPKO_0726 [Borrelia afzelii PKo] Length = 355 Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 111/369 (30%), Positives = 189/369 (51%), Gaps = 25/369 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ V +SGGVDSSV + GY I L+++ + S GSC +D+ V Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYTSIKCYYLKIWLEDELS-YIGSCPWQEDLNYVEAV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C NV + + ++++ + N V+ G TP P + CN+ +KF + D Sbjct: 60 CSKFNVPYEIINFQKEYYNKVVSYTIKELKNGNTPSPDIFCNQRIKFGAFFEKINE-QYD 118 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ TGHY +++ D ++ + + D +DQSYFL +Q+Q+ L FPLG + K Sbjct: 119 LVVTGHY--AKIQTKD---KKFFLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258 VR +A+ + L ++ DSQ ICF+ + KY + +K + G +G+I+ G+I+G HNG Sbjct: 174 VRQIAKNINLPNKNRKDSQGICFLGKIKYNEFIK-YHLG-EKKGNIIEKETGKIIGTHNG 231 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE--SLEVHRIYL-REINWLGDGL 315 +T+GQRRG+ ++ G P FV+ D + + + E S + R +L EI+W+ +G Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYSKQAKRKFLVHEIHWI-NGT 289 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 D + FK +KIR + ++ + + + K + G++ GQ +FY + Sbjct: 290 PSD--FENFK--IKIRHGEKKYSCKLKLIAKNLIEISLNKKDYGISPGQFAIFYKN---- 341 Query: 375 ARVLGGGII 383 LGG I Sbjct: 342 TECLGGAKI 350 >gi|224055025|ref|XP_002298404.1| predicted protein [Populus trichocarpa] gi|222845662|gb|EEE83209.1| predicted protein [Populus trichocarpa] Length = 434 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 120/380 (31%), Positives = 176/380 (46%), Gaps = 31/380 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +R+ V +SGGVDSSV LL G+ L+++ + C +D+ A+ Sbjct: 6 KPLRIAVLLSGGVDSSVALRLLHAAGHHCTAFYLKIWFQEDFNNFWSECPWEEDLKFAKG 65 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD + V V + + + V+ Y G TP P V CN +KF + + Sbjct: 66 VCDQVGVPLEVVHLTDEYWSNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAINNMEF 125 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +A+GHY V D + ++ D +DQ+YFL TQ QL L FPLG + KE Sbjct: 126 DYVASGHYAHVIHPVSDQINKPSVLELSKDKLKDQTYFLSHLTQAQLKRLIFPLGCIPKE 185 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGR 255 VR+LA + L D+ DSQ ICF+ + K+ + V R + G+ LE + G LG Sbjct: 186 EVRNLASKFDLPNKDRKDSQGICFLGKIKFSEFVGRHIGESEGVILEAE----TGDFLGI 241 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE-SLEVHRIYLR--EINWLG 312 H G YTIGQR+GL + G P +VV D ++ V V SL+ R R + WL Sbjct: 242 HRGFWFYTIGQRQGLRLP-GGPWYVVEKDVKNNVVFVSRNYFSLDKRRRSFRVGSLKWLS 300 Query: 313 DG------LFEDAVVDG---FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 + V G + C VKI +D ++ V V + + G+A+GQ Sbjct: 301 GSPTDMTTQLQCKVRHGPTFYDCSVKIELGED-------SPEEVVAVHLCEDDQGLAAGQ 353 Query: 364 ACVFYTSDSNEARVLGGGII 383 FY + +G G+I Sbjct: 354 FTAFYQGRT----CIGSGVI 369 >gi|216263504|ref|ZP_03435499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia afzelii ACA-1] gi|215980348|gb|EEC21169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia afzelii ACA-1] Length = 355 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 111/369 (30%), Positives = 189/369 (51%), Gaps = 25/369 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ V +SGGVDSSV + GY I L+++ + S GSC +D+ V Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYTSIKCYYLKIWLEDELS-YIGSCPWQEDLNYVEAV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C NV + + ++++ + N V+ G TP P + CN+ +KF + D Sbjct: 60 CSKFNVPYEIINFQKEYYNKVVSYTIKELKNGNTPSPDIFCNQRIKFGAFFEKINE-QYD 118 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ TGHY +++ D ++ + + D +DQSYFL +Q+Q+ L FPLG + K Sbjct: 119 LVVTGHY--AKIQTKD---KKFFLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKSE 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258 VR +A+ + L ++ DSQ ICF+ + KY + +K + G +G+I+ G+I+G HNG Sbjct: 174 VRQIAKNINLPNKNRKDSQGICFLGKIKYNEFIK-YHLG-EKKGNIIEKETGKIIGTHNG 231 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE--SLEVHRIYL-REINWLGDGL 315 +T+GQRRG+ ++ G P FV+ D + + + E S + R +L EI+W+ +G Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYSKQAKRKFLVHEIHWI-NGT 289 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 D + FK +KIR + ++ + + + K + G++ GQ +FY + Sbjct: 290 PSD--FENFK--IKIRHGEKKYSCKLKLIAKNLIEISLNKKDYGISPGQFAIFYKN---- 341 Query: 375 ARVLGGGII 383 LGG I Sbjct: 342 TECLGGAKI 350 >gi|156839411|ref|XP_001643397.1| hypothetical protein Kpol_479p27 [Vanderwaltozyma polyspora DSM 70294] gi|156114005|gb|EDO15539.1| hypothetical protein Kpol_479p27 [Vanderwaltozyma polyspora DSM 70294] Length = 415 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 119/393 (30%), Positives = 197/393 (50%), Gaps = 35/393 (8%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVCD 81 +++AMS GVDSSV AL + G+ +Q ++ +AS G C +D D +V Sbjct: 29 IIIAMSSGVDSSVAGALFAGSYPNARGIFMQNWSKDEASLDDGKEACFEKDWKDVVKVGS 88 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGAD- 139 +N+ ++E+ + V P Y G TP P ++CNR VKF L+ + + G + Sbjct: 89 HLNLPVDYINFEKDYWIDVFEPMLDVYKRGMTPNPDINCNRHVKFGKLVDHLNSKYGENN 148 Query: 140 -VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 L TGHY R L +D + + + +DQSY+L L +L P+G M K Sbjct: 149 YWLVTGHYARC-LKSTEDSQTH--LLKSYYKNKDQSYYLSQIKNGILSNLILPMGHMTKP 205 Query: 199 SVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRI---NAGIALEGDIVHLNGQI 252 VR+LA E L A+K+DSQ ICFV Q GK+ + ++ + G + D V I Sbjct: 206 EVRELAIEAELPTAEKADSQGICFVNNSQHGKFKNFLQSYLPESKGNIITIDPVSSEKII 265 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEP----LFVVYLDKNSSR--VIVGPRESLEVHRIYLR 306 G+H G+ +YTIGQ+ GL + G+P + V +N + VIV R+ + + L+ Sbjct: 266 WGQHQGLWSYTIGQKIGLSMPQGDPRYKGTWFVSEKRNDTNEIVIVKGRDHPSLFQRQLQ 325 Query: 307 EINWLGDGLFEDAVV-------DGFKCFVKIRSSQDPV---PVFVQRNDDG--VYVDFEK 354 +++ G+ ++ ++ + + ++ RS QDP+ + + N+D + + ++ Sbjct: 326 VKDFIPIGISKEQLINLCNSSTNSNELKIQYRSLQDPIDVESIKINPNEDSSMITITLKE 385 Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387 S+ + GQ C Y +D RVLG GIIS ++ Sbjct: 386 SQRAMVPGQYCCMYIND----RVLGSGIISKTR 414 >gi|312070856|ref|XP_003138339.1| hypothetical protein LOAG_02754 [Loa loa] gi|307766493|gb|EFO25727.1| hypothetical protein LOAG_02754 [Loa loa] Length = 383 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 122/394 (30%), Positives = 192/394 (48%), Gaps = 60/394 (15%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV A+SGGVDS+V A LLK+ G+DVIGV + N + + C D DA +VC+ Sbjct: 6 KVVCAISGGVDSAVSAYLLKKRGFDVIGV--HMVNWDRVEEDSSKCPQSVDEKDAEKVCN 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140 + + YV ++ +R+ N + +Y G T + V CN+T+KF +L AD Sbjct: 64 HLQIPFYVANFVDRYWNEIFTYLLDNYRKGRTVVSDVLCNKTIKFDRFHKYAFDELQADA 123 Query: 141 LATGHYIRSRLYVGDDGKRR------RIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 +ATGH+ R+ GD ++R R++ +D +DQ++FL TQ QL FP+G Sbjct: 124 VATGHFARTSF--GDFLEKRLETGLIRLLA-AVDPIKDQTFFLSTLTQSQLRRSMFPIGS 180 Query: 195 MKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFD--VVKRINAGIALEGDIVHLNGQ 251 + K+ VR +A ++G+ +IA+K +S +CF+ + K+FD + + I I DI G+ Sbjct: 181 LTKQQVRQIAVDVGMAEIAEKPESMGLCFIGKRKHFDTFINQYIEPVIGPAKDID--TGK 238 Query: 252 ILGRHNGIINYTIGQRRGL-----GVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRI 303 ++ H GI +YTIG+R + A+G LF V LD + + V +L Sbjct: 239 VVFEHKGIHHYTIGKRITMVPDHCQSAVG--LFAVGLDGKTQTLWVCQGSHHPALFAREF 296 Query: 304 YLREINWLGDGLFED--AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV-- 359 + E W+ + D + F+C QR + + + E G+ Sbjct: 297 VVEEPLWISECPLGDTGTIKTEFRC---------------QRTHPALLCEITRLEKGLLK 341 Query: 360 ----------ASGQACVFYTSDSNEARVLGGGII 383 A GQ CVFY N++ LGGG I Sbjct: 342 VKPYNPIRAAAPGQICVFY----NDSECLGGGEI 371 >gi|168035636|ref|XP_001770315.1| predicted protein [Physcomitrella patens subsp. patens] gi|162678346|gb|EDQ64805.1| predicted protein [Physcomitrella patens subsp. patens] Length = 376 Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 121/387 (31%), Positives = 175/387 (45%), Gaps = 36/387 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 + + V +SGGVDSSV LL G+ L+++ C D+ +A+ VC Sbjct: 1 LNIAVLLSGGVDSSVALRLLCAAGHSCTAYYLKIWFQEDFENFWSECPWEDDLKNAQAVC 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + V V + + + N V+ S AG TP P + CN VKF L + D Sbjct: 61 DEVGVELRVVHFTDEYWNLVVSHSISEIQAGRTPNPDILCNTCVKFGAFLDHIKDEQFDR 120 Query: 141 LATGHYIRSR-LYVGDDGKRRR---IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 +A+GHY R R +Y D G R ++C D +DQ+YFL TQ+QL L FPLG Sbjct: 121 VASGHYARIRKIYNCDTGAEERTELLLCP--DEVKDQTYFLSHLTQEQLSRLIFPLGGFT 178 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQIL 253 K VR LA MGL ++ DSQ ICF+ + K+ D + + + G LE + G++L Sbjct: 179 KAEVRQLAEVMGLYNKNRKDSQGICFLGKVKFSDFIAKHLGESEGRMLEAE----TGELL 234 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR---IYLREINW 310 G H G YT+GQR+GL + G P FVV D ++ V V E R + NW Sbjct: 235 GLHKGFWFYTMGQRKGLRFSNG-PWFVVAKDIVNNVVFVSRHYFSEDKRRRSFRVDSFNW 293 Query: 311 LGDGLFEDAVVDGFKCFVK-------------IRSSQDPVPVFVQRNDDGVYVDFEKSEV 357 F A G +C V+ S+ ++ V+ + + Sbjct: 294 FSG--FPPADNSGLQCKVRHGPRFYTCSLDIQTDSTDSEAVTKESKSLTSAVVNLNEDDQ 351 Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384 G+A GQ FY + LG +I+ Sbjct: 352 GLAPGQYAAFYQN----GVCLGSAVIT 374 >gi|324518702|gb|ADY47178.1| tRNA-specific 2-thiouridylase 1 [Ascaris suum] Length = 382 Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 127/383 (33%), Positives = 192/383 (50%), Gaps = 38/383 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV A+SGGVDS+V A LLKR+G+DV+GV + N + + C +D DAR+VC Sbjct: 7 RVACALSGGVDSAVAALLLKRNGFDVVGV--YMVNWDQVEEGVNDCPRTKDEADARKVCV 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + +V D+ + N V + +Y G T + V CNR VKF L Q L D Sbjct: 65 RLGIEFHVVDFTREYWNDVFMNMLENYRRGLTVVSDVMCNRIVKFDHLHRYAFQKLCVDA 124 Query: 141 LATGHYIRSRLYVGDDGKRRRI-----MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 +ATGH+ R+ L GD +RR + + D +DQ+YFL TQ+QL FP+G M Sbjct: 125 VATGHFARTNL--GDFLERRSMTNVARLLMSADPLKDQTYFLSTLTQKQLRRSMFPVGSM 182 Query: 196 KKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLN-GQI 252 K VR LA L ++ +K +S ICF+ + K FD ++ I + G I +++ G++ Sbjct: 183 TKPQVRQLAAGANLTEVLNKPESMGICFIGKRKSFDSF--LDQYIEPVSGLIRNVDTGRV 240 Query: 253 LGRHNGIINYTIGQR-RGLGVAMGEPL-FVVYLDKNSSRVIVGPRESLE----VHRIYLR 306 +G H+GI ++T+G+R R + PL F V +S+ + SL + Sbjct: 241 IGEHSGIHHFTLGKRIRLPPEVIQSPLGFFVASTDFASQTVWACEGSLHPLLFATEFVVS 300 Query: 307 EINWLGDG--LFEDAVVDGFKCFVKIRSSQDPVPVF---VQRNDDGVYVDFEKSEV-GVA 360 E W+ + + ++V+ F+C Q P F + R ++G K+ + A Sbjct: 301 EPEWIAESPLMKSESVLVDFRC-------QRTHPAFECVLSRLENGFLKVVPKNPIRAAA 353 Query: 361 SGQACVFYTSDSNEARVLGGGII 383 GQ CVFY SD LG G I Sbjct: 354 PGQTCVFYLSDE----CLGSGRI 372 >gi|222624284|gb|EEE58416.1| hypothetical protein OsJ_09614 [Oryza sativa Japonica Group] Length = 410 Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 110/327 (33%), Positives = 156/327 (47%), Gaps = 11/327 (3%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RV V +SGGVDSSV LL G+ L+++ C D+ A+ VC Sbjct: 78 LRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIWFQEDFRNFWSECPWDDDLKYAQAVC 137 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I+V V + + N V+ + Y +G TP P V CN +KF L LG D Sbjct: 138 DKIDVPLEVVHLSDEYWNHVVSHIINEYRSGRTPNPDVLCNTRIKFGAFLEAIENLGFDY 197 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A+GHY DD + ++ D +DQ+YFL +Q QL L FPLG + K+ V Sbjct: 198 IASGHYAHVVHPSPDDVEGPSVLQLSKDKVKDQTYFLSHLSQTQLRRLLFPLGCITKDEV 257 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHN 257 R LA +M L D+ DSQ ICF+ + K+ + V+R G+ LE + G LG H Sbjct: 258 RRLAAQMDLPNQDRKDSQGICFLGKVKFSEFVERQIGEMEGVLLEAE----TGDYLGTHR 313 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLR--EINWLGDG 314 G YTIGQR+GL + G P +VV ++ V V SL+ R R +NW + Sbjct: 314 GFWFYTIGQRQGLRLP-GGPWYVVEKGVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFSNS 372 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFV 341 + K F ++ SQ P + Sbjct: 373 GPTNNEQLKCKLFFELIGSQQSTPAVI 399 >gi|224532386|ref|ZP_03673016.1| tRNA-methyltransferase [Borrelia burgdorferi WI91-23] gi|225548926|ref|ZP_03769903.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia burgdorferi 94a] gi|225550036|ref|ZP_03770997.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia burgdorferi 118a] gi|224512693|gb|EEF83064.1| tRNA-methyltransferase [Borrelia burgdorferi WI91-23] gi|225369495|gb|EEG98947.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia burgdorferi 118a] gi|225370529|gb|EEG99965.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia burgdorferi 94a] Length = 355 Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 108/370 (29%), Positives = 189/370 (51%), Gaps = 27/370 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ V +SGGVDSSV + GY I L+++ + S G+C +D+ + Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDELS-YIGNCPWQEDLNYVEAI 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGA 138 C+ NV + + ++++ + N V+ G TP P + CN+ +KF + Q Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQY-- 117 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ TGHY + + + + ++ + D +DQSYFL +Q+Q+ L FPLG + K Sbjct: 118 DLVVTGHYAKIQ-----RKESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKS 172 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR +A+ + L D+ DSQ ICF+ + KY + +K + G +G+I+ G+I+G HN Sbjct: 173 EVRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIK-YHLG-EKKGNIIEKETGKIIGIHN 230 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDG 314 G +T+GQRRG+ ++ G P FV+ D + + + E+ + R +L EI+W+ D Sbjct: 231 GYWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWIND- 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + FK +KIR + ++ ++ + + K + G++ GQ +FY + Sbjct: 289 --TPTNFENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN--- 341 Query: 374 EARVLGGGII 383 LGG I Sbjct: 342 -TECLGGAKI 350 >gi|226320481|ref|ZP_03796047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia burgdorferi 29805] gi|226234123|gb|EEH32838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia burgdorferi 29805] Length = 355 Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 108/370 (29%), Positives = 189/370 (51%), Gaps = 27/370 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ V +SGGVDSSV + GY I L+++ + S G+C +D+ + Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDELS-YIGNCPWQEDLNYIEAI 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGA 138 C+ NV + + ++++ + N V+ G TP P + CN+ +KF + Q Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQY-- 117 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ TGHY + + + + ++ + D +DQSYFL +Q+Q+ L FPLG + K Sbjct: 118 DLVVTGHYAKIQ-----RKESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKS 172 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR +A+ + L D+ DSQ ICF+ + KY + +K + G +G+I+ G+I+G HN Sbjct: 173 EVRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIK-YHLG-EKKGNIIEKETGKIIGIHN 230 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDG 314 G +T+GQRRG+ ++ G P FV+ D + + + E+ + R +L EI+W+ D Sbjct: 231 GYWFFTVGQRRGIKLSNG-PWFVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWIND- 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + FK +KIR + ++ ++ + + K + G++ GQ +FY + Sbjct: 289 --TPTNFENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN--- 341 Query: 374 EARVLGGGII 383 LGG I Sbjct: 342 -TECLGGAKI 350 >gi|170109855|ref|XP_001886134.1| predicted protein [Laccaria bicolor S238N-H82] gi|164639064|gb|EDR03338.1| predicted protein [Laccaria bicolor S238N-H82] Length = 370 Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 111/379 (29%), Positives = 184/379 (48%), Gaps = 26/379 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LL + YD+ V ++ +++ S C +D D +RVC +++ Sbjct: 1 MSGGVDSSVAAFLLAQQDYDLSAVFMRNWDTGDESGTDKGCEWEKDWEDVQRVCKKLDLP 60 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL----SVTRQLGADVLA 142 + D + + N V P + +G TP V CNR +KF LL + T +A Sbjct: 61 CQMIDLSQEYWNRVFEPSLKQWESGVTPNTDVWCNREIKFGALLERLPAPTTSNKKPWIA 120 Query: 143 TGHYIRSRLYVGDDGKRRRI---MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 TGHY R + R + RP D +DQ+Y+L + +++ L FP+G ++K Sbjct: 121 TGHYARKSWSTTPNSPHTRPRPKLLRPSDRGKDQTYYLSSISEEGLSRALFPIGHLQKSE 180 Query: 200 VRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRI---NAGIALEGDIVHLNGQILGR 255 VR+LAR+ L A++ DS ICFV ++ K+ + + N G ++ ++G+ L + Sbjct: 181 VRELARKHQLHTAERPDSVGICFVGEKAKFSNFLSSYIPPNPGPVVD----QVSGKTLMQ 236 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL- 311 H G+ +T+G+ + M E +FV D+ S+ + V P E L + + + + W+ Sbjct: 237 HAGLWTFTLGENARI-PGMKERMFVSSKDQLSNTIYVVPGSDHEDLYSNTLRVSDFTWIW 295 Query: 312 GDGLFED-AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 D + D + GF+ + R VP V++ + G + V ++ E V GQ Y Sbjct: 296 NDAIPPDLSTPQGFRVDLMHRYRMHSVPSTVRKAETGDLIVTADEPEKAVTPGQIAALYD 355 Query: 370 SDSNEARVLGGGIISGSKR 388 D LG G+I + R Sbjct: 356 GD----WCLGCGVIKSTSR 370 >gi|323309474|gb|EGA62685.1| Slm3p [Saccharomyces cerevisiae FostersO] Length = 417 Score = 153 bits (386), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 124/396 (31%), Positives = 191/396 (48%), Gaps = 36/396 (9%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVCD 81 V+VAMS GVDSSV AAL + + GV +Q ++ ++ G C +D D RV Sbjct: 29 VIVAMSSGVDSSVAAALFAGEFPNTRGVYMQNWSESQSLDDPGKEPCYERDWRDVNRVAK 88 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTRQLGA 138 +N+ ++E+ + V P Y+ G TP P + CN+ VKF L L G Sbjct: 89 HLNIRVDKVNFEQDYWIDVFEPMLRGYSEGSTPNPDIGCNKFVKFGKLREWLDEKYGTGN 148 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 L TGHY +R+ +GK + R + +DQSY+L L P+G + K Sbjct: 149 YWLVTGHY--ARVMQEMNGKGLFHLLRSIYRPKDQSYYLSQINSTVLSSXLLPIGHLTKP 206 Query: 199 SVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLNGQ---- 251 VRDLA+ GL A+K DSQ ICFV Q GK+ + +K + GDI+ ++ Q Sbjct: 207 EVRDLAKYAGLPTAEKPDSQGICFVNNSQHGKFKNFLKHYLP--SSPGDIITVDPQSGAK 264 Query: 252 -ILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRV-IVGPRESLEVHRIY 304 GRH+G+ +YTIGQ+ G+ + +P FV ++++ + IV R++ ++ Sbjct: 265 TTWGRHDGLWSYTIGQKVGISMPQADPNYQGTWFVSEKLRDTNEILIVRGRDNPALYSDT 324 Query: 305 LREINWLGDGLFEDAVVDGFK----CFVKIRSSQDPVPV---FVQRNDDG--VYVDFEKS 355 R N+ G ED ++ F+ ++ RS Q PV + + R+ D + + Sbjct: 325 XRIENFSSLGPRED-TINAFQNTGALTLQFRSLQVPVQIKSCKLNRSADNLDITIHLASK 383 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDA 391 + + GQ+C Y D RVLG G IS +D Sbjct: 384 QRAITPGQSCCLYIDD----RVLGSGPISHVNNNDT 415 >gi|221217912|ref|ZP_03589379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia burgdorferi 72a] gi|221192218|gb|EEE18438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia burgdorferi 72a] Length = 355 Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 108/370 (29%), Positives = 189/370 (51%), Gaps = 27/370 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ V +SGGVDSSV + GY I L+++ + S G+C +D+ + Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDELS-YIGNCPWQEDLNYVEAI 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGA 138 C+ NV + + ++++ + N V+ G TP P + CN+ +KF + Q Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQY-- 117 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ TGHY + + + + ++ + D +DQSYFL +Q+Q+ L FPLG + K Sbjct: 118 DLVVTGHYAKIQ-----RKESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKS 172 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR +A+ + L D+ DSQ ICF+ + KY + +K + G +G+I+ G+I+G HN Sbjct: 173 EVRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIK-YHLG-EKKGNIIEKETGKIIGIHN 230 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDG 314 G +T+GQRRG+ ++ G P FV+ D + + + E+ + R +L EI+W+ D Sbjct: 231 GYWFFTVGQRRGIKLSNG-PWFVIEKDLGKNIIYISHNENYLKQAKRKFLVHEIHWIND- 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + FK +KIR + ++ ++ + + K + G++ GQ +FY + Sbjct: 289 --TPTNFENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN--- 341 Query: 374 EARVLGGGII 383 LGG I Sbjct: 342 -TECLGGAKI 350 >gi|269114904|ref|YP_003302667.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma hominis] gi|268322529|emb|CAX37264.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma hominis ATCC 23114] Length = 370 Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 117/374 (31%), Positives = 188/374 (50%), Gaps = 32/374 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 RVV+ MSGGVDSSV LL++ GYDV+G+ ++ ++S + G+ C QD Sbjct: 4 RVVLGMSGGVDSSVCGYLLQKQGYDVVGLFMRNWDSFLNNDILGNENITQNICPQEQDYL 63 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133 DA+ V +N+ Y D+ + + V Y G TP P + CN+ +KF Sbjct: 64 DAKAVASQLNIQLYRIDFVKEYWENVFNYLIDEYKKGRTPNPDIFCNKFIKFKAFSDYAF 123 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 ++L AD +A GHY + DG+ + R D +DQSYFL + QL + FPL Sbjct: 124 KELKADYIAMGHYANAI-----DGE----LFRAQDDNKDQSYFLAQLSPDQLKKVIFPLA 174 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252 ++ K VR++A+++ L A K DS ICF+ + + ++ N A G+I+ + +G++ Sbjct: 175 NITKPEVREIAKQLNLSTAMKKDSTGICFIGERHFTKFLE--NYIPAQPGNIIDIFSGKV 232 Query: 253 LGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 +G+H G + YTIGQR+GL + E P FVV + + + V + ++ YL + Sbjct: 233 VGKHIGAMYYTIGQRKGLNLGGYEKPYFVVGHNLSKKEIYVTNDDHID----YLMSNKLI 288 Query: 312 GDGLFEDAVVDGFKCFV-KIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYT 369 + + F K R Q + + ++ D + + V + +E V GQ V Y Sbjct: 289 ATNFNQISKEFNFANLTAKFRYRQKDIKITLKILDGNKIEVCYPNTE-AVTPGQQVVIY- 346 Query: 370 SDSNEARVLGGGII 383 D N +V+GG II Sbjct: 347 -DGN--KVVGGAII 357 >gi|320168110|gb|EFW45009.1| tRNA methyl transferase [Capsaspora owczarzaki ATCC 30864] Length = 647 Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 114/333 (34%), Positives = 169/333 (50%), Gaps = 26/333 (7%) Query: 8 RLNSLDLDKNPKDM----------RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS 57 RL+S DL++ P+ RV V +SGGVDS+V A LLKR G DVIGV ++ ++ Sbjct: 189 RLDSRDLEQIPRSHPTWPAGAPPPRVAVGVSGGVDSTVAAYLLKRQGLDVIGVYMKNWDE 248 Query: 58 RKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117 + G C QD+ DA C + + ++ + + N V F Y G TP P Sbjct: 249 LDET---GHCTGEQDMRDAALSCAALGIPFRTVNFVKEYWNDVFTVFLQEYQRGRTPNPD 305 Query: 118 VDCNRTVKFSDLLSVTR-QLGADVLATGHYI---RSRLYVGDDGKRRRIMCRPMDLERDQ 173 + CNR +KF LL+V + GA LATGHY RS G + I D +DQ Sbjct: 306 ILCNREIKFKALLNVVQTSFGAQFLATGHYAGVNRSAFASGLSPHPQLIEAH--DKAKDQ 363 Query: 174 SYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV 232 +YFL A + + L FPL ++K V+ +A E+GL +++ K +S ICFV + + FD Sbjct: 364 TYFLAAISSEALSRTLFPLYGLEKHQVKRIAHEIGLIELSTKKESVGICFVGK-RRFD-- 420 Query: 233 KRINAGIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVI 291 + I+ IA + + L +G I+G+H G YT+GQ RGL + VV D + VI Sbjct: 421 RFISNYIAPQPGYIELTDGTIVGQHQGHFLYTVGQHRGLPGGADQ-FCVVAKDSARNAVI 479 Query: 292 VGPRESLE-VHRIYLREINWLGDGLFEDAVVDG 323 V ++ ++I+ +N G +VD Sbjct: 480 VTKASAISRAYKIFGDTVNKSGTTAVPAKLVDA 512 >gi|195941501|ref|ZP_03086883.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia burgdorferi 80a] Length = 355 Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 108/370 (29%), Positives = 189/370 (51%), Gaps = 27/370 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ V +SGGVDSSV + GY I L+++ + S G+C +D+ + Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDELS-YIGNCPWQEDLNYVEAI 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGA 138 C+ NV + + ++++ + N V+ G TP P + CN+ +KF + Q Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQY-- 117 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ TGHY + + + + ++ + D +DQSYFL +Q+Q+ L FPLG + K Sbjct: 118 DLVVTGHYAKIQ-----RKESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKS 172 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR +A+ + L D+ DSQ ICF+ + KY + +K + G +G+I+ G+I+G HN Sbjct: 173 EVRQIAKNINLPNKDRRDSQGICFLGKIKYNEFIK-YHLG-EKKGNIIEKETGKIIGIHN 230 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDG 314 G +T+GQRRG+ ++ G P FV+ D + + + E+ + R +L EI+W+ D Sbjct: 231 GYWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYLKQAKRKFLVHEIHWIND- 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + FK +KIR + ++ ++ + + K + G++ GQ +FY + Sbjct: 289 --TPTNFENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN--- 341 Query: 374 EARVLGGGII 383 LGG I Sbjct: 342 -TECLGGAKI 350 >gi|238809910|dbj|BAH69700.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 382 Score = 152 bits (385), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 116/380 (30%), Positives = 178/380 (46%), Gaps = 31/380 (8%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCA 69 N +V++ MSGGVDSSV A LL + GYDV G+ ++ ++S + G+ C Sbjct: 10 NMHKKKVILGMSGGVDSSVAAYLLLQQGYDVEGLFMRNWDSYVNNDFLGNENISQDICPQ 69 Query: 70 GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 QD DA V + + + + D+ + + + V F Y G TP P + CN+ +KF Sbjct: 70 EQDYQDALAVANKLGIKLHRVDFVKEYWDNVFENFIEEYKKGRTPNPDILCNKYIKFDAF 129 Query: 130 LSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 L +L AD +A GHY + + +GK + R D +DQ+YFL T QQL + Sbjct: 130 LKYAFEKLNADYIAMGHYAKVK-----NGK----LYRAKDQNKDQTYFLAQLTNQQLEKV 180 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 PL D KE +R +A+++ L A K DS ICF+ + + ++ N A +G I+ + Sbjct: 181 LMPLADYPKEEIRKIAKKLDLATATKKDSTGICFIGERHFTKFLQ--NYIPAQKGKILDI 238 Query: 249 -NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 ++LG H+G YTIGQR+GL + E +V D ++ + P YL Sbjct: 239 KTKEVLGTHDGCFYYTIGQRKGLNLGGKSEAHYVCGHDVKNNIIYAAPASDPS----YLE 294 Query: 307 EINWLGDGL-FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQA 364 + L + K K R Q + V V+ ++ + V + V GQ Sbjct: 295 SNMLIASNLCLNHHRFNKNKLSAKFRYRQKDLKVKVEFLENNKIKVFYPSKAQAVTPGQQ 354 Query: 365 CVFYTSDSNEARVLGGGIIS 384 V Y D + LGG II Sbjct: 355 VVLYDQD----KCLGGAIIE 370 >gi|237716742|ref|ZP_04547223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. D1] gi|229442725|gb|EEO48516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. D1] Length = 368 Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 110/384 (28%), Positives = 167/384 (43%), Gaps = 73/384 (19%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGG DSSV A L GY+VIGVT + Y + GS + + DAR + + + + Sbjct: 1 MSGGTDSSVAAMRLLEAGYEVIGVTFRFY------ELNGST---EYLEDARNLAERLGIR 51 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 H +D E F +I F Y AG TP+PC CN +K+ L + ++G +ATGHY Sbjct: 52 HITYDAREIFARQIIEYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGIFYIATGHY 111 Query: 147 -----IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 + Y+ D ++DQ++FL+ Q L + P+GD+ K R Sbjct: 112 AQNIQLNETFYI----------TYAADSDKDQTFFLWGLKQDILNRMLLPMGDITKAEAR 161 Query: 202 DLAREMGL-DIADKSDSQDICF-------------VQQGK-------------------- 227 A E G +A K DS +CF V+ G+ Sbjct: 162 AWAAEHGFRKVATKKDSIGVCFCPMDYRTFLKDWLVRNGQMSVSNSEASINNSQTSGSDK 221 Query: 228 --YFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDK 285 + D ++R G V G + H G YTIGQRRGLG+ + P+FV +D Sbjct: 222 QTWSDRIRR--------GRFVDEKGNFIAWHEGYPFYTIGQRRGLGIHLNRPVFVKEIDP 273 Query: 286 NSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRN 344 + V++ SLE ++L++ N + ++ + VKIR Q+ + Sbjct: 274 EKNEVMLASLSSLEKTEMWLKDWNLVN----QERTLGRSDIIVKIRYRKQENYGTITVTS 329 Query: 345 DDGVYVDFEKSEVGVASGQACVFY 368 D ++V + +A GQA FY Sbjct: 330 DHLLHVQLHEPLTAIAPGQAAAFY 353 >gi|262341313|ref|YP_003284168.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272650|gb|ACY40558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 398 Score = 152 bits (385), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 115/398 (28%), Positives = 189/398 (47%), Gaps = 59/398 (14%) Query: 32 DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91 DSSV A +LK+ GY+VIG+ + + + K + +D DA V +N+ V + Sbjct: 15 DSSVAALILKKKGYEVIGLFMHNWEEEDSVFNKCTTWK-EDKIDAMLVAQQLNIPFQVIE 73 Query: 92 YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRL 151 ++ ++ VI Y +G+TP P + CNR +KF+ L LGAD++ATGHY+ Sbjct: 74 MKKEYKKYVIDYMFHEYESGKTPNPDILCNREIKFNIFLKKAIDLGADLIATGHYVNKEK 133 Query: 152 YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDI 211 + + R++ DL +DQSYFL TQ QL FPLG + K VR +A + GL Sbjct: 134 IIKNKKIIYRLLIGK-DLNKDQSYFLCQLTQYQLGKTLFPLGLLTKNQVRKIAEKNGLRN 192 Query: 212 ADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN---------------------- 249 A K +SQ +CFV + K + +++ I +G++V +N Sbjct: 193 AHKKESQGLCFVGKIKLSEFLQK--KIIPKKGEVVCINSDALVYKENQFPFPSSKEEELL 250 Query: 250 ------------GQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG--- 293 G+I+G H G +T GQR+G+ + + LFV+ D + V G Sbjct: 251 FLSRKKKYKKSDGKIIGYHKGAHCFTKGQRKGIALGGYQKALFVIETDVKENIVYTGIGK 310 Query: 294 --P---RESLEVHRIYLREINWLGDGLFEDAVVDGFK--CFVKIRSSQDPVPVFVQRNDD 346 P R+SL + + I+W+ + L ++ +G K F +IR Q + + Sbjct: 311 KHPGLYRKSLFIQE---KNIHWIREDL---SLKEGEKMDVFCRIRYRQSLQKSKLYKIKK 364 Query: 347 GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 G++++FE + + GQ +Y ++G G+IS Sbjct: 365 GMFIEFETMQCAITEGQFAAWYIGKE----LVGSGVIS 398 >gi|62320516|dbj|BAD95081.1| hypothetical protein [Arabidopsis thaliana] Length = 497 Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 113/369 (30%), Positives = 169/369 (45%), Gaps = 13/369 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +RV V +SGGVDSSV LL G+ L+++ C D+ A+ Sbjct: 80 KPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEGFENFWNQCPWEDDLKYAKH 139 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC+ ++V V + + V+ Y G TP P V CN +KF + + Sbjct: 140 VCEQVDVPLEVVHLTDEYWERVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISDMEY 199 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + +GHY R D ++ D+ +DQ+YFL +Q QL L FPLG +KK+ Sbjct: 200 DYVGSGHYARVVHPPADQNDASSVLELSQDMVKDQTYFLSHLSQTQLKRLLFPLGCVKKD 259 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGR 255 VR LA + L D+ DSQ ICF+ + K+ D V R GI LE + +G LG Sbjct: 260 EVRKLATQFDLPNKDRKDSQGICFLGKIKFSDFVCRHIGEMEGIILEAE----SGDFLGN 315 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLREINWLGDG 314 H G YTIGQR+GL + G P +VV D ++ V V S++ R R + + Sbjct: 316 HRGFWFYTIGQRQGLRLP-GGPWYVVEKDTKNNVVFVSRNYYSIDKRRRIFRVGSLRWNS 374 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 V +C V+ ++ + D V ++ + G+A+GQ FY + Sbjct: 375 GKPSGKVRELRCKVRHGPGFYSCSFEMEGDGDVAVVHLDEDDQGLAAGQFAAFYEGTT-- 432 Query: 375 ARVLGGGII 383 +G G+I Sbjct: 433 --CIGSGVI 439 >gi|312149442|gb|ADQ29513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia burgdorferi N40] Length = 355 Score = 152 bits (384), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 108/370 (29%), Positives = 188/370 (50%), Gaps = 27/370 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ V +SGGVDSSV + GY I L+++ + S G+C +D+ Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDELS-YIGNCPWQEDLNYVEAT 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGA 138 C+ NV + + ++++ + N V+ G TP P + CN+ +KF + Q Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQY-- 117 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ TGHY + + + + ++ + D +DQSYFL +Q+Q+ L FPLG + K Sbjct: 118 DLVVTGHYAKIQ-----RKESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKS 172 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR +A+ + L D+ DSQ ICF+ + KY + +K + G +G+I+ G+I+G HN Sbjct: 173 EVRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIK-YHLG-EKKGNIIEKETGKIIGIHN 230 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDG 314 G +T+GQRRG+ ++ G P FV+ D + + + E+ + R +L EI+W+ D Sbjct: 231 GYWFFTVGQRRGIKLSNG-PWFVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWIND- 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + FK +KIR + ++ ++ + + K + G++ GQ +FY + Sbjct: 289 --TPTNFENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN--- 341 Query: 374 EARVLGGGII 383 LGG I Sbjct: 342 -TECLGGAKI 350 >gi|221195808|ref|ZP_03568861.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Atopobium rimae ATCC 49626] gi|221184282|gb|EEE16676.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Atopobium rimae ATCC 49626] Length = 389 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 120/389 (30%), Positives = 181/389 (46%), Gaps = 45/389 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V + MSGGVDS++ AALL G+DV V ++ ++ C D+ DA RV Sbjct: 7 KVYLGMSGGVDSALSAALLLEQGFDVHAVYMRNWSKDLPGFH---CPWADDLADAERVAV 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 ++ + V+D E+ ++ V+ SYA G TP P V CN+TVKF GAD + Sbjct: 64 SLGIDLAVWDCEKEYKETVVDYLLDSYAHGYTPNPDVMCNQTVKFGTFAKRAFSEGADYI 123 Query: 142 ATGHYIR-----SRLYVGDD------------GKRRRIMCRPMDLERDQSYFLFATTQQQ 184 ATGHY R GDD G + R D +DQ+YFL+ + Sbjct: 124 ATGHYARLASGEKNACGGDDANNTTGMAGAMHGSGTSCLMRAADEHKDQTYFLWRVPSEI 183 Query: 185 LCDLRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQ----QGKYFDVVKRINAGI 239 FP+GD+ K VR + + GL I +K DS ICF+ + D +R Sbjct: 184 FDRTIFPIGDIPTKAEVRAMCADRGLGIENKPDSDGICFIGPVGLRTFLLDAFERKT--- 240 Query: 240 ALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---R 295 GDI+ +G+ LG H+G +TIGQR+GL V G +VV D N++ V V Sbjct: 241 ---GDIIEWESGKKLGEHDGAFLFTIGQRKGLSVGGGPAHYVVATDTNTNTVYVTSDPLS 297 Query: 296 ESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEK 354 +L + + + +W+ + D V+ R + + P + + + + + +E Sbjct: 298 AALWTKTMDIVDTHWISGCVPADGAYT-----VRTRHTGELRPCMLTKVSATTMRITYEV 352 Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGII 383 VA GQ+ VFY + +GGGII Sbjct: 353 PVRTVAPGQSAVFY----DGLVCIGGGII 377 >gi|216264880|ref|ZP_03436872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia burgdorferi 156a] gi|215981353|gb|EEC22160.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia burgdorferi 156a] Length = 355 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 107/370 (28%), Positives = 189/370 (51%), Gaps = 27/370 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIG-VTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ V +SGGVDSSV + GY I L+++ + S G+C +D+ + Sbjct: 1 MKIAVLLSGGVDSSVALYRIINKGYSNIKCYYLKIWVEDELS-YIGNCPWQEDLNYVEAI 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGA 138 C+ NV + + ++++ + N V+ G TP P + CN+ +KF + Q Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINSQY-- 117 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ TGHY + + + + ++ + D +DQSYFL +Q+Q+ L FPLG + K Sbjct: 118 DLVVTGHYAKIQ-----RKESKFLLKQAKDKIKDQSYFLSHLSQKQMSKLYFPLGTLLKS 172 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR +A+ + L D+ DSQ ICF+ + KY + +K + G +G+I+ G+I+G HN Sbjct: 173 EVRQIAKNINLPNKDRKDSQGICFLGKIKYNEFIK-YHLG-EKKGNIIEKETGKIIGIHN 230 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDG 314 G +T+GQRRG+ ++ G P FV+ D + + + E+ + R +L EI+W+ + Sbjct: 231 GYWFFTVGQRRGIKLSNG-PWFVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWINN- 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + FK +KIR + ++ ++ + + K + G++ GQ +FY + Sbjct: 289 --TPTNFENFK--IKIRHGEKKYSCKLKLITNNLMEISLNKKDQGISPGQFAIFYKN--- 341 Query: 374 EARVLGGGII 383 LGG I Sbjct: 342 -TECLGGAKI 350 >gi|308189959|ref|YP_003922890.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma fermentans JER] gi|319777241|ref|YP_004136892.1| tRNA-specific 2-thiouridylase mnma [Mycoplasma fermentans M64] gi|307624701|gb|ADN69006.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma fermentans JER] gi|318038316|gb|ADV34515.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma fermentans M64] Length = 372 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 115/375 (30%), Positives = 177/375 (47%), Gaps = 31/375 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 +V++ MSGGVDSSV A LL + GYDV G+ ++ ++S + G+ C QD Sbjct: 5 KVILGMSGGVDSSVAAYLLLQQGYDVEGLFMRNWDSYVNNDFLGNENISQDICPQEQDYQ 64 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133 DA V + + + + D+ + + + V F Y G TP P + CN+ +KF L Sbjct: 65 DALAVANKLGIKLHRVDFVKEYWDNVFENFIEEYKKGRTPNPDILCNKYIKFDAFLKYAF 124 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +L AD +A GHY + + +GK + R D +DQ+YFL T QQL + PL Sbjct: 125 EKLNADYIAMGHYAKVK-----NGK----LYRAKDQNKDQTYFLAQLTNQQLEKVLMPLA 175 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252 D KE +R +A+++ L A K DS ICF+ + + ++ N A +G I+ + ++ Sbjct: 176 DYPKEEIRKIAKKLDLATATKKDSTGICFIGERHFTKFLQ--NYIPAQKGKILDIKTKEV 233 Query: 253 LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 LG H+G YTIGQR+GL + E +V D ++ + P YL + Sbjct: 234 LGTHDGCFYYTIGQRKGLNLGGKSEAHYVCGHDVKNNIIYAAPASDPS----YLESNMLI 289 Query: 312 GDGL-FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYT 369 L + K K R Q + V V+ ++ + V + V GQ V Y Sbjct: 290 ASNLCLNHHRFNKNKLSAKFRYRQKDLKVKVEFLENNKIKVFYPSKAQAVTPGQQVVLYD 349 Query: 370 SDSNEARVLGGGIIS 384 D + LGG II Sbjct: 350 QD----KCLGGAIIE 360 >gi|156088637|ref|XP_001611725.1| tRNA methyl transferase family protein [Babesia bovis] gi|154798979|gb|EDO08157.1| tRNA methyl transferase family protein [Babesia bovis] Length = 665 Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 121/409 (29%), Positives = 196/409 (47%), Gaps = 37/409 (9%) Query: 4 SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63 + T+L + L RV +SGGVDS+V LLK G+D+ L++++ Sbjct: 270 ASGTQLGNPSLPTVLGQSRVACLVSGGVDSAVALWLLKSRGFDIEAFYLKVWSVENGDL- 328 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 G C D+ A V +NV +V +++ + V+ PF + + GETP P V CN Sbjct: 329 -GDCQWSADLEHAMGVTKLLNVPLHVVPFQDVYHQRVLDPFVAGASLGETPNPDVCCNEF 387 Query: 124 VKFSDLLSVTRQLGADVLATGHY--IRSRLYVGDDGKRRRI-MCRPMDLERDQSYFLFAT 180 +KF L + G +A+GHY I L G + R+ +CR DL +DQ+YFL Sbjct: 388 IKFGAFLDYAVRWGFSHIASGHYASIIEDLVPGTSTRIARLRLCR--DLRKDQTYFLSRL 445 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 +Q QL + FPL + K VR +AR +G D+ +S +CF+ + DV ++ + Sbjct: 446 SQSQLRRVMFPLSQLYKNEVRTIARTLGFSNYDRKESMGLCFLGK---VDVKSFLSHRLG 502 Query: 241 -LEGDIV-HLNGQILGRHNGIINYTIGQRRGLGVAM------GEPLFVVYLDKNSSRVIV 292 + G IV H G +GRH+G+ ++TIGQR G+ + + +VV D +++ + V Sbjct: 503 EVPGPIVDHDTGNCIGRHHGLFHFTIGQREGIARYLNSVRDTNQSRYVVAKDIDTNTLYV 562 Query: 293 GPRESLEVH--------RIYLREINW-LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR 343 R + + R + +I W + D F+ + D +K+R S + Sbjct: 563 STRYHTKCYTEPGSVRRRFRISDIRWNVPD--FKRFITDPNSLSMKVRHSPTLCRGDISF 620 Query: 344 ND----DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388 +D G V EK+++G+A+GQ V Y+ LG G I +R Sbjct: 621 DDLDTASGASVHLEKADIGLATGQYAVIYSG----LNCLGAGKIVAKQR 665 >gi|320168295|gb|EFW45194.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Capsaspora owczarzaki ATCC 30864] Length = 554 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 114/333 (34%), Positives = 168/333 (50%), Gaps = 26/333 (7%) Query: 8 RLNSLDLDKNPKDM----------RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS 57 RL+S DL+ P+ RV V +SGGVDS+V A LLKR G DVIGV ++ ++ Sbjct: 96 RLDSRDLEPIPRSHPTWPAGAPPPRVAVGVSGGVDSTVAAYLLKRQGLDVIGVYMKNWDE 155 Query: 58 RKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117 + G C QD+ DA C + + ++ + + N V F Y G TP P Sbjct: 156 LDET---GHCTGEQDMRDAALSCAALGIPFRTVNFVKEYWNDVFTVFLQEYQRGRTPNPD 212 Query: 118 VDCNRTVKFSDLLSVTR-QLGADVLATGHYI---RSRLYVGDDGKRRRIMCRPMDLERDQ 173 + CNR +KF LL+V + GA LATGHY RS G + I D +DQ Sbjct: 213 ILCNREIKFKALLNVVQTSFGAQFLATGHYAGVNRSAFASGLSPHPQLIEAH--DKAKDQ 270 Query: 174 SYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV 232 +YFL A + + L FPL ++K V+ +A E+GL +++ K +S ICFV + + FD Sbjct: 271 TYFLAAISSEALSRTLFPLYGLEKHQVKRIAHEIGLIELSTKKESVGICFVGK-RRFD-- 327 Query: 233 KRINAGIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVI 291 + I+ IA + + L +G I+G+H G YT+GQ RGL + VV D + VI Sbjct: 328 RFISNYIAPQPGYIELTDGTIVGQHQGHFLYTVGQHRGLPGGADQ-FCVVAKDSARNAVI 386 Query: 292 VGPRESLE-VHRIYLREINWLGDGLFEDAVVDG 323 V ++ ++I+ +N G +VD Sbjct: 387 VTKASAISRAYKIFGDTVNKSGTTAVPAKLVDA 419 >gi|257094501|ref|YP_003168142.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047025|gb|ACV36213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 366 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 125/383 (32%), Positives = 186/383 (48%), Gaps = 36/383 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K VVV +SGGVDSSV A LLK G+ V+G+ ++ + + C + QD+ D Sbjct: 3 KGKTVVVGLSGGVDSSVAALLLKEQGWHVVGLFMKNWEDDDTDEY---CSSRQDLVDVLS 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + V ++ ++R V F + YAAG TP P V CN +KFS L ++GA Sbjct: 60 VADRIGIDVEVVNFASQYRERVFAHFLAEYAAGRTPNPDVLCNSEIKFSAFLEHALKIGA 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + G + + D +DQSYFL QQQL FPL + K Sbjct: 120 ERIATGHYAGVREFQG-----AWQLLKAEDGTKDQSYFLHRLNQQQLAKTLFPLAGLYKR 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR +A GL +A K DS ICF+ + + + + R +G+I L + ++LG H+ Sbjct: 175 EVRKMAAAAGLHLALKKDSTGICFIGERPFKEFLLRYLP--PKKGEIRGLDDDRLLGEHD 232 Query: 258 GIINYTIGQRRGL---GVAMG--------EPLFVVYLD--KNSSRVIVG-PRESLEVHRI 303 G+ +TIGQR+GL GV G + FV D N V+ G +L ++ Sbjct: 233 GVAYHTIGQRKGLHIGGVKGGKSGDSGDHDAWFVARKDIATNVLYVVQGHAHPALLADQL 292 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASG 362 +++W+ + + K R Q V+ D + F + + V G Sbjct: 293 TAGDLSWVAG----EPPHTHWVYTAKTRYRQADAACEVEHVDAHSCLISFAEPQWAVTPG 348 Query: 363 QACVFYTSDSNEARV-LGGGIIS 384 Q+ V Y E+RV LGGG+I+ Sbjct: 349 QSVVVY-----ESRVCLGGGVIA 366 >gi|321458097|gb|EFX69171.1| hypothetical protein DAPPUDRAFT_202999 [Daphnia pulex] Length = 409 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 113/398 (28%), Positives = 191/398 (47%), Gaps = 27/398 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVV +SGGVDSSV A LLK+ GYDV+GV ++ ++ + G C + +DV A+R C Sbjct: 9 RVVCGVSGGVDSSVAALLLKKKGYDVVGVFMKNWDGK---DELGVCQSDKDVEVAQRTCK 65 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 +N+ + ++ + + N V Y AG TP P + CN +KF ++ L AD Sbjct: 66 ILNIPFFEVNFVKEYWNHVFENLLQDYQAGLTPNPDILCNYHIKFDLFFDYAKEKLDADF 125 Query: 141 LATGHYIRSRL---YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 +ATGHY RS L V + + +++ D +DQ++FL Q L FP+G + K Sbjct: 126 VATGHYARSSLGINSVETETENTKLLTSRDDF-KDQTFFLSHIKQSSLKKTLFPIGGLLK 184 Query: 198 ESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQIL 253 VR LA + GL+ ++++ +S ICF+ + + + + N G ++ D + + Sbjct: 185 SEVRKLASDNGLEHVSNRQNSTGICFIGRRNFQEFISEYVPNNPGPFIDVD----TDEEV 240 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV--GPRESLEVHRIYLREI-NW 310 G+H GI +T+GQR +G + +P FV + + V G + +L +W Sbjct: 241 GQHLGIHMWTLGQRCRIGGCL-KPYFVASKQPETRTIFVASGTNHPALFSKAFLSSTPHW 299 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 + E F CF + + ++ + + G+ V ++ + GQ VFY+ Sbjct: 300 IHSTPRELQENKTFDCFFRFQHTKPLTAAQIAVHQSGLIVTLDRPTRALTPGQYAVFYSG 359 Query: 371 DSNEARVLGGGIISGSKRSD---AVEESLLSVIGDEFP 405 LG I + +D + E+ +S + D FP Sbjct: 360 Q----ECLGCARIVQNLNNDWHNCMTETSISSMYDRFP 393 >gi|297852856|ref|XP_002894309.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arabidopsis lyrata subsp. lyrata] gi|297340151|gb|EFH70568.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arabidopsis lyrata subsp. lyrata] Length = 500 Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 115/371 (30%), Positives = 170/371 (45%), Gaps = 17/371 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +RV V +SGGVDSSV LL G+ L+++ C D+ A+ Sbjct: 83 KPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEGFENFWNQCPWEDDLKYAKH 142 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC+ ++V V + + V+ Y G TP P V CN +KF + + Sbjct: 143 VCEQVDVPLEVVHLTDEYWERVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISDMEY 202 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + +GHY + D ++ D+ +DQ+YFL +Q QL L FPLG +KK+ Sbjct: 203 DYVGSGHYAKVVHPPVDQNDASSVLELSQDMVKDQTYFLSHLSQTQLKRLIFPLGCVKKD 262 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRIN--AGIALEGDIVHLNGQILGR 255 VR LA + L D+ DSQ ICF+ + K+ D V I GI LE + G LG Sbjct: 263 EVRKLATQFDLPNKDRKDSQGICFLGKIKFSDFVCAHIGEMEGIILEAE----TGDFLGN 318 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLR--EINWLG 312 H G YTIGQR+GL + G P +VV D ++ V V S++ R R + WL Sbjct: 319 HRGFWFYTIGQRQGLRLP-GGPWYVVEKDTKNNVVFVSRNYYSIDKRRRIFRVGSLRWLS 377 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 V +C V+ S ++ + D V ++ + G+A+GQ FY + Sbjct: 378 GK--PSGNVRELRCKVRHGPSFYSCSFEMEADGDVAVVHLDEDDQGLAAGQFAAFYEGTT 435 Query: 373 NEARVLGGGII 383 +G G+I Sbjct: 436 ----CIGSGVI 442 >gi|321309601|ref|YP_004191930.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma haemofelis str. Langford 1] gi|319801445|emb|CBY92091.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma haemofelis str. Langford 1] Length = 368 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 112/378 (29%), Positives = 194/378 (51%), Gaps = 27/378 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRV 79 +VV+A+SGGVDS++ A LLK+ +D+ V +Q ++S+ + + C + +D+ + + Sbjct: 6 KVVIALSGGVDSAISAFLLKQKNHDLHAVYMQNWDSQVNEENAEDSGCSSREDLKYVKEI 65 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGA 138 C+ +N+ V+++ + V P+ + P + CN +KF LL+ + + G Sbjct: 66 CNKLNIPLTVYNFVPEYWEYVFEPYLNLVQNNLLSNPDILCNSKIKFGVLLNRIIQDFGP 125 Query: 139 DV-LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK- 196 D+ LATGH+ R + DG+ +C + +DQ+YFL QL + FPL D++ Sbjct: 126 DIKLATGHWARV---INRDGRYMLAVCS--NPNKDQTYFLSRLAPDQLKYILFPLQDIQS 180 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255 KE +R++A+++ L + ++ DS ICF+ + KY D ++ N EGD+V + G+ILG Sbjct: 181 KEEIREIAKDLELSVWNRRDSTGICFIGKRKYSDFME--NFIDHEEGDLVDIETGKILGT 238 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES-----LEVHRIYLREINW 310 H G Y + QR GL + E + V V+ RES L + +I+W Sbjct: 239 HKGSHLYALHQRSGLALKGYEERYYVCKKDPKKNVVYLCRESQIPLYLHTTSTFCSDIHW 298 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + +A G + F+K R + + V ++ ++G ++ EK+ + + GQ VFY Sbjct: 299 IN-----EAPNVGEELFIKARHTPSFLKVKLRSLENGECHITHEKTHI-TSPGQYVVFYD 352 Query: 370 SDSNEARVLGGGIISGSK 387 D N LG GI K Sbjct: 353 LDRNIC--LGSGIYKDGK 368 >gi|294656411|ref|XP_458677.2| DEHA2D04818p [Debaryomyces hansenii CBS767] gi|199431453|emb|CAG86816.2| DEHA2D04818p [Debaryomyces hansenii] Length = 415 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 116/401 (28%), Positives = 198/401 (49%), Gaps = 39/401 (9%) Query: 2 VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61 +++ N + + N D ++VAMS GVDSSV AAL +V G+ + A+ Sbjct: 30 LMTNEVSTNYMQPEPNAND-EIIVAMSSGVDSSVCAALYAEKYKNVRGIYM-------AN 81 Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 + + C D D +++C+ +N+ ++E+ + N V P Y G TP P V CN Sbjct: 82 WSQTAKCTESDWNDVKKICNDLNIPCERVNFEKEYWNEVFQPMVQMYEKGLTPNPDVGCN 141 Query: 122 RTVKFSDLLS-VTRQLGAD---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177 + VKF ++ +T++ + L TGHY R + + R +DQSY+L Sbjct: 142 KYVKFGKMIEHLTKKFSNNQKWWLVTGHYAR---IMKCQTSNEYNLLRGYYKSKDQSYYL 198 Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA 237 ++ L + P+G + K +VR+LA+ L A K DSQ +CFV Q + + +N Sbjct: 199 ANIPKRVLSQVLMPIGHLTKPNVRELAKGYNLHTAKKPDSQGLCFVSQDEN-NFRNFLNE 257 Query: 238 GIALE-GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLF--VVYL-----DKNSSR 289 IA G+I+ +G+I G+H G+ + TIGQ+ G+ + G+P + + ++ D N Sbjct: 258 YIAPNPGNIITEDGKIWGQHQGLWHATIGQKSGISMPQGDPRYKGIWFISEKRYDTNELV 317 Query: 290 VIVG-PRESLEVHRIYLREINWLGDGLFEDAVVDGFKC-----FVKIRSSQDPVPV-FVQ 342 ++ G + L + ++E +WL D + A+ + KC V+ RS Q+P + ++ Sbjct: 318 IVKGNNNDRLFKKGLKVKEWSWLMDDI--SAISE--KCEEGNLSVQYRSLQEPEIINSIK 373 Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 + V ++ K +A GQ V Y + RVLG GI+ Sbjct: 374 ISQSDVDIELVKKARAMAPGQNIVLYEGN----RVLGSGIL 410 >gi|269102223|ref|ZP_06154920.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] gi|268162121|gb|EEZ40617.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] Length = 333 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 96/321 (29%), Positives = 163/321 (50%), Gaps = 30/321 (9%) Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LG 137 VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + L Sbjct: 25 VCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLE 84 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +A GHY R + + M R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 85 ADYIAMGHYTRRTFPQAGEEPQ---MLRGLDNNKDQSYFLYTLSHEQIARSLFPVGELEK 141 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRH 256 VR +A E GL A K DS ICF+ + K+ + + + A G+IV + G ++G H Sbjct: 142 PEVRRIAEEQGLVTAKKKDSTGICFIGERKFTEFLGKYLP--AQPGNIVTADEGTVIGEH 199 Query: 257 NGIINYTIGQRRGL-------GVAMGEPLFVVYLDKNSSRVIVG-----PRESLEVHRIY 304 G++ +T+GQR+GL G +P +VV D + ++V PR L+ + + Sbjct: 200 QGLMYHTLGQRKGLHIGGQKGGNGHEDPWYVVDKDVKRNELVVAQGHDHPR--LKSNGLI 257 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQ 363 +++W+ + + C VK R Q +P + +D+ + V F++ ++ V GQ Sbjct: 258 ASQLHWVD----REPIRQPVTCTVKTRYRQQDIPCTIIPIDDENIKVIFDEPQIAVTPGQ 313 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY + +GGGII Sbjct: 314 SAVFYNGEV----CMGGGIIE 330 >gi|145336613|ref|NP_175542.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arabidopsis thaliana] gi|332194528|gb|AEE32649.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arabidopsis thaliana] Length = 497 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 112/369 (30%), Positives = 169/369 (45%), Gaps = 13/369 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +RV V +SGGVDSSV LL G+ L+++ C D+ A+ Sbjct: 80 KPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEGFENFWNQCPWEDDLKYAKH 139 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC+ ++V V + + V+ Y G TP P V CN +KF + + Sbjct: 140 VCEQVDVPLEVVHLTDEYWERVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISDMEY 199 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + +GHY + D ++ D+ +DQ+YFL +Q QL L FPLG +KK+ Sbjct: 200 DYVGSGHYAKVVHPPADQNDASSVLELSQDMVKDQTYFLSHLSQTQLKRLLFPLGCVKKD 259 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGR 255 VR LA + L D+ DSQ ICF+ + K+ D V R GI LE + +G LG Sbjct: 260 EVRKLATQFDLPNKDRKDSQGICFLGKIKFSDFVCRHIGEMEGIILEAE----SGDFLGN 315 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLREINWLGDG 314 H G YTIGQR+GL + G P +VV D ++ V V S++ R R + + Sbjct: 316 HRGFWFYTIGQRQGLRLP-GGPWYVVEKDTKNNVVFVSRNYYSIDKRRRIFRVGSLRWNS 374 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 V +C V+ ++ + D V ++ + G+A+GQ FY + Sbjct: 375 GKPSGKVRELRCKVRHGPGFYSCSFEMEGDGDVAVVHLDEDDQGLAAGQFAAFYEGTT-- 432 Query: 375 ARVLGGGII 383 +G G+I Sbjct: 433 --CIGSGVI 439 >gi|4836940|gb|AAD30642.1|AC006085_15 Unknown protein [Arabidopsis thaliana] gi|119935887|gb|ABM06024.1| At1g51310 [Arabidopsis thaliana] Length = 421 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 112/369 (30%), Positives = 169/369 (45%), Gaps = 13/369 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +RV V +SGGVDSSV LL G+ L+++ C D+ A+ Sbjct: 4 KPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEGFENFWNQCPWEDDLKYAKH 63 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC+ ++V V + + V+ Y G TP P V CN +KF + + Sbjct: 64 VCEQVDVPLEVVHLTDEYWERVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISDMEY 123 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + +GHY + D ++ D+ +DQ+YFL +Q QL L FPLG +KK+ Sbjct: 124 DYVGSGHYAKVVHPPADQNDASSVLELSQDMVKDQTYFLSHLSQTQLKRLLFPLGCVKKD 183 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGR 255 VR LA + L D+ DSQ ICF+ + K+ D V R GI LE + +G LG Sbjct: 184 EVRKLATQFDLPNKDRKDSQGICFLGKIKFSDFVCRHIGEMEGIILEAE----SGDFLGN 239 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLREINWLGDG 314 H G YTIGQR+GL + G P +VV D ++ V V S++ R R + + Sbjct: 240 HRGFWFYTIGQRQGLRLP-GGPWYVVEKDTKNNVVFVSRNYYSIDKRRRIFRVGSLRWNS 298 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 V +C V+ ++ + D V ++ + G+A+GQ FY + Sbjct: 299 GKPSGKVRELRCKVRHGPGFYSCSFEMEGDGDVAVVHLDEDDQGLAAGQFAAFYEGTT-- 356 Query: 375 ARVLGGGII 383 +G G+I Sbjct: 357 --CIGSGVI 363 >gi|50312295|ref|XP_456180.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49645316|emb|CAG98888.1| KLLA0F24706p [Kluyveromyces lactis] Length = 415 Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 121/391 (30%), Positives = 195/391 (49%), Gaps = 41/391 (10%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRVCD 81 +VV MSGGVDSSV AAL +V GV +Q + ++ R + C ++ DA +V Sbjct: 32 IVVGMSGGVDSSVCAALFAAYP-NVHGVYMQNWGKDQSLTRPEEDPCYEKEWKDAEKVAK 90 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGAD- 139 +N+ ++E+ + V P Y+ G TP P + CN+ VKF L+ + + G + Sbjct: 91 HLNIPVEFVNFEKDYWLNVFAPMLEQYSMGYTPNPDIGCNQFVKFGKLMDHLDVKFGKNN 150 Query: 140 -VLATGHYIRSRLYVGDDGKRRR--IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 L GHY +R+ D G R + R + ++DQSY+L + L + P+G + Sbjct: 151 YWLVMGHY--ARILRRDSGPERSEPHLMRGLYQQKDQSYYLSQVSVPSLNQMILPIGHLT 208 Query: 197 KESVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALE-GDIV---HLN 249 K VR++A+E+ L A K DSQ ICFV Q GK+ + +K + +E G+I+ L Sbjct: 209 KPEVREMAKEVDLHTATKPDSQGICFVNNSQHGKFKNFLKEY---LPMELGNIITIDELT 265 Query: 250 GQ--ILGRHNGIINYTIGQRRGLGVAMGEPLF--VVYLDKNSSR----VIVGPRES---- 297 G+ + G+H GI +YTIGQ+ G+ + G+P + Y+ + + R VIV +++ Sbjct: 266 GKKTVWGKHPGIWSYTIGQKIGISLPQGDPRYQGAWYVSEKNKRTREIVIVRGKDNNNLF 325 Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR--NDDGVYVDF 352 + V + N L +A ++ ++ RS Q PV V N + + Sbjct: 326 KDVVTVKHFKILSKNPLSKEELNEA-INKETLHMQFRSLQTPVKVTSVEWINSNEFSLKL 384 Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGII 383 E+ E +A GQ C Y ++ RV+G GII Sbjct: 385 ERKERAMAPGQYCCLYVNE----RVIGSGII 411 >gi|224534479|ref|ZP_03675055.1| tRNA-methyltransferase [Borrelia spielmanii A14S] gi|224514156|gb|EEF84474.1| tRNA-methyltransferase [Borrelia spielmanii A14S] Length = 355 Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 110/372 (29%), Positives = 189/372 (50%), Gaps = 31/372 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ V +SGGVDSSV + GY +V L+++ + S GSC +D+ V Sbjct: 1 MKIAVLLSGGVDSSVALYRIISKGYTNVKCYYLKIWLEDELS-YIGSCPWQEDLNYVEAV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGA 138 C+ NV + + ++++ + N V+ +G TP P + CN+ +KF + +Q Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIKELKSGNTPSPDIFCNQRIKFGAFFEKINKQY-- 117 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ TGHY + + ++ + + D +DQSYFL +Q Q+ L FPLG + K Sbjct: 118 DLVVTGHYAKIQ-----KKDKKIFLKQAKDKIKDQSYFLSHLSQNQMSKLYFPLGTLLKS 172 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR +A+ + L ++ DSQ ICF+ + KY + +K + G +G+I+ G+I+G H+ Sbjct: 173 EVRQIAKSINLPNKNRKDSQGICFLGKIKYNEFIK-YHLG-EKKGNIIEKETGRIIGIHD 230 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE--SLEVHRIYL-REINWLGDG 314 G +T+GQRRG+ ++ G P FV+ D + + + E S + R +L EI+W+ Sbjct: 231 GYWFFTVGQRRGIKLSNG-PWFVIEKDLEKNIIYISHNENYSKQAKRKFLVHEIHWINGT 289 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPV---FVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + FK +KIR + + N +Y++ K + G++ GQ +FY + Sbjct: 290 PLN---FENFK--IKIRHGEKKYSCKLKLITNNLIEIYLN--KKDCGISPGQFAIFYKN- 341 Query: 372 SNEARVLGGGII 383 LGG I Sbjct: 342 ---TECLGGAKI 350 >gi|71030526|ref|XP_764905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Theileria parva strain Muguga] gi|68351861|gb|EAN32622.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Theileria parva] Length = 693 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 108/391 (27%), Positives = 183/391 (46%), Gaps = 49/391 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV V +SGGVDSS+ L+K +DV L++ S G CA D+ A +VC+ Sbjct: 298 RVAVLVSGGVDSSLALWLMKSRAFDVHAFYLKV---NDLSNGPG-LCASNDISYAMQVCN 353 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + V+ +V + + + ++ Y GE P P V CN +KF + L + G D + Sbjct: 354 ILGVTLHVLPFSKAYSEHILSGVLDDYRKGEVPNPDVLCNSRIKFGEFLRMAIDWGFDYV 413 Query: 142 ATGHY------------------IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183 A+GHY + + K +R +C D +DQ+YFL TQ Sbjct: 414 ASGHYATLCDDFFTKEQIKSPSSLNGSTSINGYYKIKR-LCLSNDTLKDQTYFLSRLTQN 472 Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LE 242 Q+ L FP+G + K VR+ A+ +GL DK DS +CF++ D+ + + + + Sbjct: 473 QMSKLIFPIGHLTKSQVREFAKTVGLPTFDKKDSFGLCFLED---LDISQYLTKSLGESQ 529 Query: 243 GDIV-HLNGQILGRHNGIINYTIGQRRGLGVAMG------EPLFVVYLDKNSSRVIV--- 292 G IV + +++G HNG+ N+TIGQ++ + + P +VV D ++ + V Sbjct: 530 GPIVEYETNKVIGTHNGLYNFTIGQKKTINSFLNPKHVGSTPKYVVKKDIATNTLYVSSN 589 Query: 293 ----------GPRESLEVHRIYLREINW--LGDGLFEDAVVDGFKCFVKIRSSQDPVPVF 340 G R S +V ++ ++ L + + + D FK VK+R + + Sbjct: 590 YNDDFYTNPKGIRSSFKVKDMFWNVPDYKELINKIQSEGSDDNFKFKVKLRHTPNYSQCA 649 Query: 341 VQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + + D V + + G+++GQ CVFY + Sbjct: 650 INFDGDEATVFLKHPDTGISTGQYCVFYADN 680 >gi|309807698|ref|ZP_07701637.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LactinV 01V1-a] gi|308169072|gb|EFO71151.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LactinV 01V1-a] Length = 301 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 101/296 (34%), Positives = 150/296 (50%), Gaps = 22/296 (7%) Query: 104 FASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIM 163 F S Y G TP P + CN+ +KF L +L AD +A GHY ++ V D +M Sbjct: 13 FLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKLDADYIAMGHYAKT---VTDKNGVVHMM 69 Query: 164 CRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV 223 RP D +DQ+YFL TQ+QL FPL D+ K VR +A + GL A K DS ICF+ Sbjct: 70 -RPKDGNKDQTYFLSQVTQEQLKKAIFPLADLSKPQVRMIAEQAGLATAKKKDSTGICFI 128 Query: 224 QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGE----PLF 279 + + + + A+ G+IV +G+I+G+H+G++ YTIGQR GLG+ + P F Sbjct: 129 GERNFKNFLSEFLP--AMGGNIVTADGRIVGKHSGLMYYTIGQRSGLGLGGNQSSCAPWF 186 Query: 280 VVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP 336 VV + + +IV + L + E+++ D + C K R Q Sbjct: 187 VVGKNLQKNELIVEQGYDSDLLYASSLDASEVSFFTGLPSNDTTI---HCTAKFRYRQPD 243 Query: 337 VPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSD 390 V V + N ++ V+V+F++ V GQA VFY + LGG II + R + Sbjct: 244 VAVTMNYNKANNTVHVEFDELARAVTPGQAIVFYDGE----ECLGGAIIDKAYRGN 295 >gi|66805429|ref|XP_636447.1| tRNA -methyltransferase [Dictyostelium discoideum AX4] gi|74852396|sp|Q54I63|MTU1_DICDI RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1 gi|60464825|gb|EAL62944.1| tRNA -methyltransferase [Dictyostelium discoideum AX4] Length = 451 Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 123/394 (31%), Positives = 190/394 (48%), Gaps = 37/394 (9%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 PK +V + MSGGVDS++ A LLK G+DV GV ++ ++ + + G C +D DA Sbjct: 62 PKKPKVCIGMSGGVDSTITAKLLKLQGFDVTGVFIKSWDEVEDT---GRCQGERDWKDAL 118 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-L 136 + +++ Y D+ + + N V V F Y G TP P V CNR +KF ++ Sbjct: 119 EASNFLDIPMYKADFVKDYWNRVFVDFLKDYKNGLTPNPDVWCNREIKFDLFFDFAKENF 178 Query: 137 GADVLATGHYIRSRLY-----VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 G D +ATGHY S LY VGD+ + R +D +DQ++FL T ++L FP Sbjct: 179 GVDYIATGHY--SNLYYGEENVGDNNNNNLQLHRAIDKNKDQTFFLCMTKGERLKQAIFP 236 Query: 192 LGDMKKESVRDLAREMG--LDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDI--V 246 +G KE++ A+ + I K S+ ICF+ + D + + + L+ GD + Sbjct: 237 IGGFTKENIVSFAKTIPNFSKITSKKSSRGICFIGKRPLPDFLSQY---MTLKPGDFFDI 293 Query: 247 HLNGQILG-RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 N I G +H G + YT+GQ+ + ++ E F+V D + V V P + +Y Sbjct: 294 STNSFIKGKKHKGSVCYTMGQKANID-SLSERYFIVRSDIERNIVYVCPESQFDQFSLYY 352 Query: 306 ----REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-----DG--VY-VDFE 353 NW+ + E GFK R D V + ++ DG +Y V+ + Sbjct: 353 EFNTHSFNWINEIPTEVKSEQGFKGRGICRHRGDVVNLTIKDTGKTSPIDGSVIYSVNLD 412 Query: 354 KSEVGVASGQA-CVFYTSDSNEARVLGGGIISGS 386 + VASGQ C+F D N R GGG+I+ S Sbjct: 413 QPLRSVASGQILCLF---DRNTDRCFGGGVINSS 443 >gi|330803532|ref|XP_003289759.1| hypothetical protein DICPUDRAFT_154197 [Dictyostelium purpureum] gi|325080152|gb|EGC33720.1| hypothetical protein DICPUDRAFT_154197 [Dictyostelium purpureum] Length = 428 Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 117/384 (30%), Positives = 187/384 (48%), Gaps = 27/384 (7%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 R S+DL P +V V MSGGVDS++ A +LK G+DV GV ++ ++ + S G C Sbjct: 48 RFPSMDLI--PTKPKVAVGMSGGVDSTITAKILKHQGFDVTGVFIKSWDDIEES---GRC 102 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 +D DA V +++ Y D+ + + N V F Y +G TP P V CNR +KF Sbjct: 103 QGERDYKDAIAVAKYLDIPMYQADFVKDYWNRVFTGFLKDYQSGITPNPDVWCNREIKFD 162 Query: 128 DLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 + ++ G D +ATGHY S LY + + + R +D +DQ+YFL T + L Sbjct: 163 LFIDFAKENFGVDYIATGHY--SNLYYDKNDPNKIELYRSVDKSKDQTYFLCMTKTKGLA 220 Query: 187 DLRFPLGDMKKESVRDLAREMG--LDIADKSDSQDICFVQQGKYFDVVKR-INAGIALEG 243 + FP+GD K+ + D A+ + ++ K S+ ICF+ + D + + I+ Sbjct: 221 NSIFPIGDFTKDKIIDFAKTIPDFTNVLSKKSSRGICFIGKKSLPDFLSQYIDLKPGFYY 280 Query: 244 DIVHLNGQILG--RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR----ES 297 DI G I+ +H G I YTIGQ+ + + E +VV D + V V P + Sbjct: 281 DIS--KGFIIPHQKHQGSICYTIGQKAKIH-SSSEKYYVVSTDIKKNIVNVCPESLVSKY 337 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-----GVYVDF 352 L + + +NW+ + E +GFK + + + V + ++R DD VY Sbjct: 338 LNFSQFQIHGLNWINEIPKEVFSEEGFKARGQYKHRGEIVELIMKRTDDLYNNSNVYNIQ 397 Query: 353 EKSEV--GVASGQACVFYTSDSNE 374 SE +ASGQ + D+++ Sbjct: 398 ITSEPIRNLASGQILCLFDKDTDK 421 >gi|124516570|gb|EAY58078.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1 [Leptospirillum rubarum] Length = 361 Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 106/373 (28%), Positives = 180/373 (48%), Gaps = 31/373 (8%) Query: 25 VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG----------SCCAGQDVY 74 + +SGGVDS+V A LLK G+DV G +++++ + R G +CC V Sbjct: 1 MGLSGGVDSTVAALLLKEAGFDVYGAIVEIWSENSSGGRSGEEREKPWFERACCHLPMV- 59 Query: 75 DARRVCDT-INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 + +C+ +++ + D ++ F+ ++ F Y G TP PC DCN +K L+ Sbjct: 60 --KFLCEEYLHIPYVQIDQKQNFQEKIVDVFREGYHNGVTPNPCTDCNAEIKIKTLIDWA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 Q +ATGHY ++ V + R + + +D ++DQSYFL + L + FPLG Sbjct: 118 EQQKISYVATGHYAKNHYSVQN---RLWGIAQALDRKKDQSYFLSRVPEHVLRKVLFPLG 174 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD--IVHLNGQ 251 K+ VR+ AR + + + ++ + CF+ +KR + G+ + + G+ Sbjct: 175 HWTKDKVREFARSKKIPVEEMVENMEACFLSAKNVTSFLKR-EEEVHSSGNWKVTDMKGE 233 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 +G I T GQR+G+GVA E ++V +D ++ VI+G ++ + +R+ L Sbjct: 234 KIGEIPTGIGLTKGQRKGIGVANAERMYVKKVDVHNKVVIMGSKKDILNRNFRIRDP--L 291 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 G LF+ + +VK RS + VP + N + + GV GQ FY Sbjct: 292 GP-LFQKKIKGNL--YVKFRSVMEAVPCIEKGN---LRFELLNENDGVTPGQIAAFY--- 342 Query: 372 SNEARVLGGGIIS 384 +E VLG GI+ Sbjct: 343 DDEQMVLGSGILE 355 >gi|66472552|ref|NP_001018435.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Danio rerio] gi|82192768|sp|Q503J2|MTU1_DANRE RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1 gi|63101232|gb|AAH95308.1| TRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Danio rerio] gi|182891436|gb|AAI64518.1| Trmu protein [Danio rerio] Length = 416 Score = 149 bits (376), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 123/397 (30%), Positives = 189/397 (47%), Gaps = 54/397 (13%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV AMSGGVDSSV A LLKR GY V GV ++ ++S+ + KG C + +D DA +VC Sbjct: 6 HVVCAMSGGVDSSVSALLLKRMGYHVTGVFMKNWDSQ---EEKGLCSSDRDCEDAYKVCK 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140 +++ + Y + + + V Y G TP P + CN+ +KF LGAD Sbjct: 63 MLDIPFHEVSYVKEYWHEVFSNLLWEYERGRTPNPDIICNKHIKFKHFYQYAVNTLGADA 122 Query: 141 LATGHYIRS--------RLYVGDDGK---RRRIMCRP-------MDLERDQSYFLFATTQ 182 +ATGHY R+ + + + K R R R DL +DQ++FL +Q Sbjct: 123 MATGHYARTSQEDEEVFQQKLTEAPKSLFRDRFEIRKPVRLYQGADLLKDQTFFLSQISQ 182 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 L FPL + K V+ +A E G + K +S ICF+ + + + + + Sbjct: 183 DALRHTLFPLAGLTKGYVKKIAAEAGFQHVLKKKESMGICFIGKRDFENFI--LEYLEPR 240 Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP------ 294 G+ V + +GQI+G+H G T+GQR +G + FVV D ++ V V P Sbjct: 241 PGNFVSIEDGQIMGKHKGWFTLTLGQRARIG-GRADAWFVVDKDVTTADVFVCPSTFHPA 299 Query: 295 --RESLEVHRIYLREINWLGD----GLFEDAVVDGFKCFVKIRSSQDPV-PVFVQRNDDG 347 R++L+ R + W+ + L ++D CF +++ P+ P V N DG Sbjct: 300 LFRDTLQTDRFH-----WIAEEPPAELVHTQMMDCHFCF----NNRMPLTPCTVTLNLDG 350 Query: 348 -VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 V+V ++ G+A+GQ V Y LG G I Sbjct: 351 SVWVMVKEPMRGMATGQFAVLYKGHE----CLGSGKI 383 >gi|260642609|ref|ZP_05416575.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides finegoldii DSM 17565] gi|260621349|gb|EEX44220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides finegoldii DSM 17565] Length = 365 Score = 149 bits (375), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 116/388 (29%), Positives = 181/388 (46%), Gaps = 45/388 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV++ MSGG DSSV A L GY+V G+T + Y ++ + + DAR Sbjct: 4 ENRRVLLGMSGGTDSSVAAMRLLEGGYEVTGITFRFYELNDST---------EYLEDARS 54 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + H +D + FR +I F Y G TP+PC CN +K+ L V ++G Sbjct: 55 LAERLGIRHITYDARDVFRKQIIEYFVQEYMEGRTPVPCTLCNNCLKWPLLAKVADEMGI 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY++ G + D ++DQS+FL+ Q L + P+G++ K Sbjct: 115 FYIATGHYVQKVELEGT-----YYITHAADPDKDQSFFLWGLKQDILRRILLPMGNITKV 169 Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINA--------------GIALEG 243 R A E G +A K DS +CF Y +K A + G Sbjct: 170 EARVWAAERGFQKVATKKDSIGVCFCPM-DYRSFLKEWLARNGQLRSENVSCWSEMVRRG 228 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFV--VYLDKNSSRVIVGPRESLEVH 301 V G +G H G YTIGQRRGLG+ + P+FV +Y +KN V++ +LE Sbjct: 229 RFVDEKGNFIGWHEGYPFYTIGQRRGLGIHLNRPVFVKEIYPEKNE--VVLSSLSALEKT 286 Query: 302 RIYLREINWLGDGLFEDAVVDGFK-CFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGV 359 + L++ N L + G+ VKIR Q+ D+ +++ + + Sbjct: 287 EMQLKDWN-----LVNPQKILGYNDVIVKIRYRKQENHCTVTVTPDNLLHIQLHEPLTAI 341 Query: 360 ASGQACVFYTSDSNEARVLGGGIISGSK 387 A+GQA FY + +LGGGII ++ Sbjct: 342 AAGQAAAFY----RDGLLLGGGIIVNAR 365 >gi|156551968|ref|XP_001600621.1| PREDICTED: similar to ENSANGP00000015341 [Nasonia vitripennis] Length = 395 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 105/378 (27%), Positives = 181/378 (47%), Gaps = 26/378 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V +SGGVDS+V A LLK G+ V G+ ++ ++ G C A +D DA+ +C+ Sbjct: 4 KVIVGISGGVDSAVAALLLKSKGFKVTGIFMRNWD---IVNELGECQAEKDYEDAKWICN 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140 + + + ++ + + N V +Y G+TP P + CN+ +KF+ R +LGAD Sbjct: 61 RLKIPLHDVNFVKDYWNEVFSYLLENYEVGKTPNPDIQCNKKIKFNKFFHYARTELGADA 120 Query: 141 LATGHYIRSRL------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 +ATGHY R+ Y D + R D +DQ++FL Q L FPLG+ Sbjct: 121 IATGHYARNSFGSFLEDYKPDTNAS---LLRAKDSLKDQTFFLSQIPQLSLRRTMFPLGE 177 Query: 195 MKKESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLNGQI 252 K+ V+ +A+E L+I A+K +S ICF+ ++ D +V+ + D G I Sbjct: 178 YLKKDVKKMAKEANLEILANKKESMGICFIGSRQFQDFIVEYVEEKPGYFIDFK--TGNI 235 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 +G+H GI +T+GQ +G + P FV D +++ + V +L + ++ Sbjct: 236 VGKHTGIHQWTLGQGCKIG-GLPSPYFVFRKDTDNNNIYVVAGSSHPALFSEFLVASNVH 294 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + E + C + + VP V + + + + K + + GQ V Y Sbjct: 295 WINEEPLELKNRKVYDCDFRFQHRNILVPCSVFKTTSNKLLIRLYKPKRAITPGQYAVLY 354 Query: 369 TSDSNEARVLGGGIISGS 386 + + LG I+ S Sbjct: 355 AGE----QCLGSAEITSS 368 >gi|302307975|ref|NP_984774.2| AEL087Cp [Ashbya gossypii ATCC 10895] gi|299789248|gb|AAS52598.2| AEL087Cp [Ashbya gossypii ATCC 10895] Length = 410 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 122/392 (31%), Positives = 184/392 (46%), Gaps = 39/392 (9%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS---KRKGSCCAGQDVYDARRV 79 ++VAMSGGVDSSV AAL V G+ +Q ++ S + K C QD D +V Sbjct: 29 IIVAMSGGVDSSVCAALYAHFP-KVRGLYMQNWSQTSGSGPVEGKAEPCYEQDWKDIEKV 87 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTRQL 136 +N+ ++E + V P Y G TP P + CNR VKF L L Sbjct: 88 GAYLNIPVERVNFERDYWLDVFEPMLQRYQQGYTPNPDIGCNRFVKFGALREHLDKEYGR 147 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 G L TGHY R + +R + R +DQSY+L ++ L DL P+G + Sbjct: 148 GNYWLVTGHYAR---ILSPQTRRETHLLRSHYAPKDQSYYLSQVGREALADLLMPMGFLT 204 Query: 197 KESVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLNGQ-- 251 K VR A E+ L A K DSQ ICFV Q G++ + ++ G IV + + Sbjct: 205 KPEVRQWAAELHLPNATKPDSQGICFVNNSQHGRFQNFLQEYLPSSV--GHIVTVEEESG 262 Query: 252 ---ILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRV-IVGPRESLEVHR 302 I G+H GI +YTIGQR G+ + G+P +V + D ++ + IV R++ +++ Sbjct: 263 TRRIWGQHRGIWSYTIGQRVGISLPQGDPKYQGAWYVSHKDPKTNTIEIVKGRDNRALYK 322 Query: 303 IYLREINWLG-------DGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEK 354 L ++ E A+ +G + +++ RS Q V V +Q D G + Sbjct: 323 DTLSVSDFESLVPPEDLASTLEAAMTNG-ELYMQFRSLQQAVKVTRLQLQDSGFELQLAT 381 Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 ++ +A GQ C Y +D RVLG G + + Sbjct: 382 AQRAMAPGQYCCLYHND----RVLGSGTVRAT 409 >gi|297746327|emb|CBI16383.3| unnamed protein product [Vitis vinifera] Length = 544 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 112/373 (30%), Positives = 171/373 (45%), Gaps = 21/373 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +++ V +SGGVDSSV LL G+ L+++ C D+ A+ VC Sbjct: 88 LKIAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPWEDDLKYAKAVC 147 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D ++V V + + V+ Y G TP P V CN +KF + D Sbjct: 148 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSKEFDY 207 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A+GHY D + ++ D+ +DQ+YFL +Q QL L FPLG + K+ V Sbjct: 208 VASGHYANVVHSFTDQMDKPSVLELSKDMVKDQTYFLSHLSQIQLKRLIFPLGCIPKDEV 267 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHN 257 R LA ++ L D+ DSQ ICF+ + K+ + V R GI LE + G +LG+H Sbjct: 268 RSLATKLDLPNRDRKDSQGICFLGKIKFSEFVARHIGEKEGIILEAE----TGDLLGKHR 323 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE-SLEVHRIYLR--EINWLGDG 314 G YTIGQR+GL + G P +VV D ++ V V SL+ R R + W+ Sbjct: 324 GFWFYTIGQRQGLRLP-GGPWYVVEKDVKNNVVFVSRNYFSLDKRRRLFRVGSLKWISRE 382 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG----VYVDFEKSEVGVASGQACVFYTS 370 ++ +C V+ ++ +DG V + + G+A+GQ FY Sbjct: 383 --PPGQINQLQCKVRHGPGFYNCSFTMEPGEDGHEDVAVVQLSEDDQGLAAGQFTAFYQG 440 Query: 371 DSNEARVLGGGII 383 S +G G+I Sbjct: 441 RS----CIGSGVI 449 >gi|255544898|ref|XP_002513510.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ricinus communis] gi|223547418|gb|EEF48913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ricinus communis] Length = 497 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 115/391 (29%), Positives = 178/391 (45%), Gaps = 23/391 (5%) Query: 3 VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62 + E L+ DKN ++R+ + +SGGVDSSV LL G+ L+++ Sbjct: 55 IIEPNYLSCCLPDKN--NLRIALLLSGGVDSSVALRLLHAAGHHCTAFYLKIWFQEDFEN 112 Query: 63 RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122 C +D+ A+ VCD +++ V + + V+ Y G TP P V CN Sbjct: 113 FWSECPWEEDLKYAKAVCDQVDIPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNT 172 Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 +KF + + D +A+GHY + D+ + ++ D+ +DQ+YFL +Q Sbjct: 173 RIKFGAFMDAINNMEFDYVASGHYAKVIHPSADEINQPSVLELSKDMVKDQTYFLSHLSQ 232 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGI 239 QL L FPLG + K+ VR LA L D+ DSQ ICF+ + K+ + V R GI Sbjct: 233 AQLRRLIFPLGGISKDEVRKLATLFNLPNKDRKDSQGICFLGKIKFSEFVARHIGEMEGI 292 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE-SL 298 LE + G LG H G YTIGQR+GL + G P +VV D ++ V V S Sbjct: 293 MLEAE----TGDFLGNHRGFWFYTIGQRQGLRLP-GGPWYVVEKDVKNNVVFVSRNYFSF 347 Query: 299 EVHRIYLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND----DGVYVDF 352 + R LR + W ++ +C V+ V ++ + D V Sbjct: 348 DKRRRLLRVGSLRWFNGSPPKET--SELQCKVRHGPGFYNCSVVIEPGEVDDQDVAIVQL 405 Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGII 383 + + G+A+GQ FY + +G G+I Sbjct: 406 CEDDQGLAAGQFAAFYKGRT----CIGSGVI 432 >gi|254566067|ref|XP_002490144.1| tRNA-specific 2-thiouridylase, responsible for 2-thiolation of the wobble base of mitochondrial tRNA [Pichia pastoris GS115] gi|238029940|emb|CAY67863.1| tRNA-specific 2-thiouridylase, responsible for 2-thiolation of the wobble base of mitochondrial tRNA [Pichia pastoris GS115] Length = 398 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 121/389 (31%), Positives = 181/389 (46%), Gaps = 41/389 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 R+VVAMS GVDSSV AAL ++ +V G+ + + S S C D D ++ Sbjct: 25 RIVVAMSSGVDSSVTAALCRKIFPRSEVEGIFMANWTS-------DSNCTDSDWNDVKKT 77 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGA 138 C I + D+E+ + V P Y G+TP P V CNR VKF ++ +T LG Sbjct: 78 CSHIGIPCRRVDFEKEYWTEVFEPMLEQYRIGKTPNPDVGCNRYVKFGKMIEHLTNTLGE 137 Query: 139 D---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L TGHY R + D R + + R L +DQSY+L L + P+G Sbjct: 138 QQPWWLVTGHYAR---VLEDITSREKHLLRSDYLPKDQSYYLSRVKDSSLERMFLPIGHF 194 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHL--NG-- 250 K +R+LA++ L + K DSQ +CFV Q K K ++ + E GDI+ + NG Sbjct: 195 SKPEIRNLAKKWKLPTSSKPDSQGLCFVSQ-KEGHFKKFLDEFLPPEPGDIITIDENGFK 253 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGE-----PLFVV-YLDKNSSRVIVGPRESLEVHRIY 304 G H G+ + TIGQR G+ + G+ FV K + VIV + +++ Sbjct: 254 HKWGSHQGLWHATIGQRSGVSMPQGDRNYKGAWFVSEKRPKTNEIVIVKGSNNPALYKDT 313 Query: 305 LREINWLGDGLFEDAVVDGF---KCFVKIRSSQDPVPVFVQR------NDDGVYVDFEKS 355 + NWL G F + + V+ RS QDP+ + + N+ + ++ Sbjct: 314 VETSNWLWLGPFNADNLKNISINELIVQYRSLQDPIGLLNWKFFSQSINNQRMTFRLKQK 373 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGIIS 384 ++ GQ V Y D RVLG G+I+ Sbjct: 374 YRAISPGQIAVLYHRD----RVLGCGMIT 398 >gi|225435460|ref|XP_002282827.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 540 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 112/373 (30%), Positives = 171/373 (45%), Gaps = 21/373 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +++ V +SGGVDSSV LL G+ L+++ C D+ A+ VC Sbjct: 84 LKIAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPWEDDLKYAKAVC 143 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D ++V V + + V+ Y G TP P V CN +KF + D Sbjct: 144 DQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISSKEFDY 203 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A+GHY D + ++ D+ +DQ+YFL +Q QL L FPLG + K+ V Sbjct: 204 VASGHYANVVHSFTDQMDKPSVLELSKDMVKDQTYFLSHLSQIQLKRLIFPLGCIPKDEV 263 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHN 257 R LA ++ L D+ DSQ ICF+ + K+ + V R GI LE + G +LG+H Sbjct: 264 RSLATKLDLPNRDRKDSQGICFLGKIKFSEFVARHIGEKEGIILEAE----TGDLLGKHR 319 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE-SLEVHRIYLR--EINWLGDG 314 G YTIGQR+GL + G P +VV D ++ V V SL+ R R + W+ Sbjct: 320 GFWFYTIGQRQGLRLP-GGPWYVVEKDVKNNVVFVSRNYFSLDKRRRLFRVGSLKWISRE 378 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG----VYVDFEKSEVGVASGQACVFYTS 370 ++ +C V+ ++ +DG V + + G+A+GQ FY Sbjct: 379 --PPGQINQLQCKVRHGPGFYNCSFTMEPGEDGHEDVAVVQLSEDDQGLAAGQFTAFYQG 436 Query: 371 DSNEARVLGGGII 383 S +G G+I Sbjct: 437 RS----CIGSGVI 445 >gi|328350542|emb|CCA36942.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pichia pastoris CBS 7435] Length = 397 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 121/389 (31%), Positives = 181/389 (46%), Gaps = 41/389 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 R+VVAMS GVDSSV AAL ++ +V G+ + + S S C D D ++ Sbjct: 24 RIVVAMSSGVDSSVTAALCRKIFPRSEVEGIFMANWTS-------DSNCTDSDWNDVKKT 76 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGA 138 C I + D+E+ + V P Y G+TP P V CNR VKF ++ +T LG Sbjct: 77 CSHIGIPCRRVDFEKEYWTEVFEPMLEQYRIGKTPNPDVGCNRYVKFGKMIEHLTNTLGE 136 Query: 139 D---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L TGHY R + D R + + R L +DQSY+L L + P+G Sbjct: 137 QQPWWLVTGHYAR---VLEDITSREKHLLRSDYLPKDQSYYLSRVKDSSLERMFLPIGHF 193 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHL--NG-- 250 K +R+LA++ L + K DSQ +CFV Q K K ++ + E GDI+ + NG Sbjct: 194 SKPEIRNLAKKWKLPTSSKPDSQGLCFVSQ-KEGHFKKFLDEFLPPEPGDIITIDENGFK 252 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGE-----PLFVV-YLDKNSSRVIVGPRESLEVHRIY 304 G H G+ + TIGQR G+ + G+ FV K + VIV + +++ Sbjct: 253 HKWGSHQGLWHATIGQRSGVSMPQGDRNYKGAWFVSEKRPKTNEIVIVKGSNNPALYKDT 312 Query: 305 LREINWLGDGLFEDAVVDGF---KCFVKIRSSQDPVPVFVQR------NDDGVYVDFEKS 355 + NWL G F + + V+ RS QDP+ + + N+ + ++ Sbjct: 313 VETSNWLWLGPFNADNLKNISINELIVQYRSLQDPIGLLNWKFFSQSINNQRMTFRLKQK 372 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGIIS 384 ++ GQ V Y D RVLG G+I+ Sbjct: 373 YRAISPGQIAVLYHRD----RVLGCGMIT 397 >gi|299117474|emb|CBN73977.1| conserved unknown protein [Ectocarpus siliculosus] Length = 491 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 103/276 (37%), Positives = 147/276 (53%), Gaps = 12/276 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRV 79 RVVV MSGGVDSSVVA LL + GY+V+GV ++ ++ + + GS C A D+ DARRV Sbjct: 37 RVVVGMSGGVDSSVVAMLLHQQGYEVVGVFMRNWDEQDET---GSDVCAADTDLEDARRV 93 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGA 138 + + D+ + N V P TP V CNR +KF ++ A Sbjct: 94 GYHLGIPVKTVDFSREYWNEVFEPSLQELDRCRTPNMDVACNRFIKFDAFREHALGRMSA 153 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R+ G D R ++ + D +DQ+YFL + L + FPLG + K Sbjct: 154 DFVATGHYARTAPGPGGDWSRP-VLRQAEDGNKDQTYFLSGVPSEGLAKVLFPLGGLTKP 212 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLN-GQILGRH 256 VR LA E GL +A K +S +CFV GK I+ + G+ V ++ G+++GRH Sbjct: 213 EVRRLAEEGGLPVARKRESMGVCFV--GKRRSWASFISQYLTPSPGNFVCVDTGEVVGRH 270 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV 292 G+ YT+GQ+ L M E +V LD +S+ V V Sbjct: 271 GGVQLYTVGQKSHLD-GMPEKYYVAGLDSDSNSVYV 305 >gi|260655076|ref|ZP_05860564.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Jonquetella anthropi E3_33 E1] gi|260630187|gb|EEX48381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Jonquetella anthropi E3_33 E1] Length = 344 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 128/372 (34%), Positives = 180/372 (48%), Gaps = 42/372 (11%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V+V +SGGVDS L+ GY V V L++ + +A +R DV R + Sbjct: 5 VLVGVSGGVDSICSCLKLRDLGYQVAPVFLKMKD--QADER--------DVQRIARFEEV 54 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT--RQLGADV 140 ++ D E FR VI PF AG TP PCV CN+ +K L RQ+GA Sbjct: 55 TGLTVETVDCRELFRQRVIEPFLQELTAGRTPNPCVICNQFLKVRLLFEEADRRQIGA-- 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPM--DLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY + + DG +CR +DQSY L+ Q L L FPL + +K Sbjct: 113 VATGHYAK---ILQKDG-----LCRLARGASAKDQSYMLYRLPQAYLERLVFPLENSEKG 164 Query: 199 SVRDLARE-MGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 VR LARE +G D DSQDICF+ G + + G +V +GQ+LGRH Sbjct: 165 QVRRLAREALGGSFGD-GDSQDICFLGSLGLNAFLASHVTGAAIQPGQMVSDSGQVLGRH 223 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G+ +YT+GQR+GLG+ G P +V + ++I+ E E RI L++ W Sbjct: 224 RGLAHYTVGQRKGLGLG-GGPWYVTEKRLDERQLILSHVERPE-RRIILKDPVW------ 275 Query: 317 EDAVVDGFKCF-VKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV-ASGQACVFYTSDSNE 374 + D K + V+ R P P ++R D+G + + G A GQ+ V Y + Sbjct: 276 -HVLPDETKSYLVQTRYRSHPKPCTLRRTDEGRWAVLLDAPSGASAPGQSAVVYDGEL-- 332 Query: 375 ARVLGGGIISGS 386 V+GGGII S Sbjct: 333 --VVGGGIIHQS 342 >gi|257784715|ref|YP_003179932.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Atopobium parvulum DSM 20469] gi|257473222|gb|ACV51341.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Atopobium parvulum DSM 20469] Length = 361 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 118/371 (31%), Positives = 183/371 (49%), Gaps = 27/371 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V + MSGGVDS++ AALL GY+V + ++ ++ + C D+ DA RVC T Sbjct: 5 VYLGMSGGVDSALSAALLLEAGYNVKAIYMRNWSKDLPGFK---CPWADDLADAERVCVT 61 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + V+D E ++ V+ +Y G TP P V CN+TVKF GA+ +A Sbjct: 62 LGIDLDVWDCEAEYKATVVDYLLDAYEHGRTPNPDVMCNQTVKFGTFAERAFAEGANFVA 121 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KKESVR 201 TGHY ++ G ++ + R D +DQ+YFL+ FP+G + K VR Sbjct: 122 TGHYAQNV-----PGTKK--LLRAADAHKDQTYFLWRVPGHLFERTLFPIGHIATKAEVR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGII 260 + E GL I K DS ICF+ G ++ +GD++ G+ILG H+G Sbjct: 175 SMCAERGLGIETKPDSDGICFI--GPVGLRTFLLDTFQKKQGDVIEWETGKILGTHDGAF 232 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGDGLFE 317 +T+GQR+GL + G +VV D + V V +L R+ L +++W+ Sbjct: 233 LFTVGQRKGLNIGGGPARYVVATDTLKNVVYVTCDLNCPALWTRRMELSDMHWISG---- 288 Query: 318 DAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + DG + ++ R + VPV F ++ + +F++ VA GQ+ V Y D E Sbjct: 289 EPAADG-RYVIRTRHTGALVPVTFTLTDNQCGFAEFDQPVKTVAPGQSAVLY--DGQE-- 343 Query: 377 VLGGGIISGSK 387 V+GGGII K Sbjct: 344 VVGGGIIEADK 354 >gi|254578364|ref|XP_002495168.1| ZYRO0B04994p [Zygosaccharomyces rouxii] gi|238938058|emb|CAR26235.1| ZYRO0B04994p [Zygosaccharomyces rouxii] Length = 408 Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 123/386 (31%), Positives = 185/386 (47%), Gaps = 34/386 (8%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCD 81 V++AMS GVDSSV AAL + G+ +Q + S+ + + C +D D RV + Sbjct: 29 VIIAMSSGVDSSVSAALFAEQYPNARGIYIQSWGKSQSLTDPQLEPCYERDWKDVGRVAE 88 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGAD- 139 + + ++E+ + V P SY G TP P + CNR VKF L + +Q GA+ Sbjct: 89 HLGIPVDKVNFEKEYWLDVFEPMLESYNKGWTPNPDIGCNRFVKFGKLREYLDQQYGANN 148 Query: 140 -VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 L TGHY R +D + R +DQSY+L L L FP G + K Sbjct: 149 YWLVTGHYARVLSSSYNDQPH---LLRSFYPAKDQSYYLSQVDTDILGQLIFPTGHLTKP 205 Query: 199 SVRDLAREMGL-DIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHL----NG 250 VR+LA GL + K DSQ ICFV Q GK+ ++ G+IV + N Sbjct: 206 EVRELAVAAGLTTTSQKPDSQGICFVNNSQSGKFKHFLEHYLPNSP--GNIVTIEEDGNK 263 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFV--VY----LDKNSSRVIVGPRESLEVHRIY 304 ++ GRH G+ ++TIGQ+ GL + G+P + Y L ++ VIV R++ +++ Sbjct: 264 RVWGRHPGLWSHTIGQKVGLSMPQGDPRYAGSWYISDKLQDSNELVIVRGRDNPALYQDT 323 Query: 305 LREINWLG-----DGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVG 358 + N L ++A+ G K F++ RS QDP+ V + D + ++ Sbjct: 324 VTITNTFSLDLNFRRLMKEAIEQG-KLFIQYRSLQDPIAVKDCHFDQDETVLKLGSAQRA 382 Query: 359 VASGQACVFYTSDSNEARVLGGGIIS 384 +A GQ C Y + RVLG G IS Sbjct: 383 MAPGQYCCLYLQN----RVLGSGTIS 404 >gi|224010034|ref|XP_002293975.1| tRNA-methyltransferase [Thalassiosira pseudonana CCMP1335] gi|220970647|gb|EED88984.1| tRNA-methyltransferase [Thalassiosira pseudonana CCMP1335] Length = 392 Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 123/397 (30%), Positives = 187/397 (47%), Gaps = 33/397 (8%) Query: 11 SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70 S D + P V + +SGGVDSSV LL R Y+V L+++ + S G C Sbjct: 4 SKDTTRKPT---VAMLLSGGVDSSVAMHLLLRQNYNVTAFYLRIWLEDELS-HLGECPWE 59 Query: 71 QDVYDARRVCDTI-NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 D+ + VC+ NVS + +R V+ G TP P + CN VKF Sbjct: 60 DDLQVCQSVCEHAGNVSLETVSLGKEYRERVVQYTIEEAQRGRTPNPDIMCNSRVKFGCF 119 Query: 130 LSVTRQLGADV--LATGHYIRSRLYVGDDGKR--RRIMCRPMDLERDQSYFLFATTQQQL 185 L + G D +A+GHY ++L DD ++ + R D +DQSYFL A TQ+QL Sbjct: 120 LEYIEESGMDFDYVASGHY--AQLKDDDDTSSISQKRLFRAPDPVKDQSYFLCALTQKQL 177 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 + FP+G+ +K VR+LA + L ++ DSQ +CF+ + ++ D + GD+ Sbjct: 178 SKVIFPIGEYQKSEVRELATQFQLPNRNRPDSQGLCFLGKVRFDDFLASYLGDRP--GDV 235 Query: 246 VH-LNGQILGRHNGIINYTIGQRRGLGVAMGE------PLFVVYLDKNSSRVIVGPRE-- 296 V LNG ++GRHNG+ +T+GQR+G+G M P +VV D+ V V R Sbjct: 236 VDALNGDVIGRHNGLWYHTVGQRKGIGKVMFPLATAKGPWYVVAKDQERDIVYVSNRYDE 295 Query: 297 ---SLEVHRIYLREINWLGD----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY 349 + + ++ WL + + +KIR V + DDG Sbjct: 296 DDFAQARSEFEVEDVRWLAGEAPMNAHHEKSWHEVRLDMKIRHGPRVVQGTLMLKDDGSV 355 Query: 350 --VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + ++ + G+A GQ VFY D+ E LG +IS Sbjct: 356 GNIRLDQKDGGLAPGQYVVFYQPDTLEC--LGAAVIS 390 >gi|219685499|ref|ZP_03540316.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia garinii Far04] gi|219672898|gb|EED29920.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia garinii Far04] Length = 344 Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 101/319 (31%), Positives = 171/319 (53%), Gaps = 20/319 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVT-LQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ V +SGGVDSSV + GY I L+++ + S G+C +D+ V Sbjct: 1 MKIAVLLSGGVDSSVALYKVINKGYTNIKCYYLKIWLEDELS-YIGNCPWQEDLNYVEAV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C+ NV + + ++++ + N V+ G TP P + CN+ +KF + D Sbjct: 60 CNKFNVPYEIINFQKEYYNKVVSYTIEELKNGNTPSPDIFCNQRIKFGAFFEKINE-QYD 118 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ TGHY R ++ +++ + + D +DQSYFL +Q+Q+ L FPLG + K Sbjct: 119 LVVTGHYARIQI-----KEKKFFLKQAKDKIKDQSYFLSHLSQEQMSKLCFPLGTLFKSE 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258 VR +A+ + L D+ DSQ ICF+ + KY + +K + G +G+IV G+I+G HNG Sbjct: 174 VRQIAKSINLPNKDRKDSQGICFLGKIKYNEFIK-YHLG-EKKGNIVEKETGKIIGIHNG 231 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL--EVHRIYL-REINWLGDGL 315 +T+GQRRG+ ++ G P FV+ D + + + E+ + R +L EI+W+ +G+ Sbjct: 232 YWFFTVGQRRGIKLSNG-PWFVIEKDLKKNIIYISHNENYLKQAKRKFLVHEIHWI-NGM 289 Query: 316 FEDAVVDGFKCFVKIRSSQ 334 D + FK +KIR + Sbjct: 290 PSD--FENFK--IKIRHGE 304 >gi|328794279|ref|XP_003252036.1| PREDICTED: tRNA-specific 2-thiouridylase mnmA-like, partial [Apis mellifera] Length = 319 Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 113/370 (30%), Positives = 164/370 (44%), Gaps = 67/370 (18%) Query: 31 VDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVF 90 VDSSV A LLK GYDVIGV ++ ++ + G C A D D +RV D I + +Y Sbjct: 1 VDSSVSALLLKEQGYDVIGVFMKNWDD---TDDTGVCTATDDYEDVKRVADQIGIPYYSI 57 Query: 91 DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSR 150 ++E+ + + V F + Y G TP P V CN +KF L L AD +A GHY ++ Sbjct: 58 NFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLEFALNLDADYIAMGHYAKT- 116 Query: 151 LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210 + D +M RP D +DQ+YFL Q Q+ + FPL ++ K Sbjct: 117 --ITDKNGITHMM-RPKDGNKDQTYFLSQLNQNQISRVIFPLANLTKPQ----------- 162 Query: 211 IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGL 270 GD+V +G+++G H G++ YTIGQR GL Sbjct: 163 -------------------------------SGDMVTPDGKVVGHHAGLMYYTIGQRSGL 191 Query: 271 GVAMGE----PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFK- 325 G+ + P FVV + +++IV ++ + +Y E+ F FK Sbjct: 192 GLGSTKESTAPWFVVGKNLQKNQLIV--QQGYDSKLLYATELEASDMSFFTGQPDHDFKI 249 Query: 326 -CFVKIRSSQDPVPVFVQ----RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 C K R Q V V V +N VY F++ V GQA V Y + LGG Sbjct: 250 HCSAKFRYRQPDVGVTVSYDAAKNKAKVY--FDEPARAVTPGQALVLYQGE----ECLGG 303 Query: 381 GIISGSKRSD 390 G I + ++D Sbjct: 304 GNIDCAYQND 313 >gi|71894390|ref|YP_278498.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma synoviae 53] gi|123644146|sp|Q4A634|MNMA_MYCS5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71851178|gb|AAZ43787.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase [Mycoplasma synoviae 53] Length = 372 Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 93/269 (34%), Positives = 151/269 (56%), Gaps = 23/269 (8%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVYD 75 VVV +SGGVDSSV A LLK++ Y+VIG+ ++ ++S + G+ C D D Sbjct: 8 VVVGLSGGVDSSVAAYLLKKN-YNVIGLFMRNWDSLINNDYLGNREINNDICPQELDYKD 66 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS--VT 133 A+ + +++ Y D+ + + + V F S Y G TP P + CN+ +KF DL + Sbjct: 67 AQEIARQLDIPLYRVDFVKEYWDYVFENFISEYKKGRTPNPDILCNKYIKF-DLFAKHAF 125 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +L D +ATGHY + + +G+ + R D +DQSYFL +++QL + FPL Sbjct: 126 NELKTDYIATGHYAKMK-----NGE----LYRASDKNKDQSYFLSQLSKEQLKKVLFPLE 176 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252 ++ K+ +R +ARE L A K DS ICF+ + K+ ++ N A +G+++ + N +I Sbjct: 177 NLTKDEIRKIAREQNLITAAKKDSTGICFIGERKFAKFLQ--NYIPAKKGNVLDITNQKI 234 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVV 281 +G H+G YTIGQR+GL + + + V Sbjct: 235 VGEHSGCFYYTIGQRKGLNLGGNKESYYV 263 >gi|161870410|ref|YP_001599582.1| tRNA-specific 2-thiouridylase MnmA [Neisseria meningitidis 053442] gi|161595963|gb|ABX73623.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis 053442] Length = 334 Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 107/328 (32%), Positives = 158/328 (48%), Gaps = 21/328 (6%) Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C QD +DA V D I + + ++ ++++ V F Y+AG TP P V CN +KF Sbjct: 18 CSIKQDSFDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKF 77 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L GAD +ATGHY R + G + + +D +DQSYFL+ QL Sbjct: 78 KCFLDYAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLE 132 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 FPLG ++K VR LA E L A K DS ICF+ + + + +++ G +V Sbjct: 133 RAIFPLGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TDNGKMV 190 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVGPRESLEVHRI 303 G+ +G H G++ YT+GQR+GLG+ GEP FV L KN V+ G L + Sbjct: 191 TPEGKTVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPL----L 246 Query: 304 YLREI--NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVAS 361 Y R + N L L E + C + R + P + +D+ + F++ + V Sbjct: 247 YTRSLVMNDLSFTLPERPKAGRYTCKTRYRMADAPCEL-RYLDDETAELVFDEPQWAVTP 305 Query: 362 GQACVFYTSDSNEARVLGGGIISGSKRS 389 GQ+ V Y D LGGGII + + Sbjct: 306 GQSAVLYDGDI----CLGGGIIQTTDKP 329 >gi|149197386|ref|ZP_01874437.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lentisphaera araneosa HTCC2155] gi|149139404|gb|EDM27806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lentisphaera araneosa HTCC2155] Length = 353 Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 107/370 (28%), Positives = 185/370 (50%), Gaps = 24/370 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ + +SGGVDSSV LLK +G +++ L+++ + + G C +D+ R V Sbjct: 1 MKIAMLLSGGVDSSVALRLLKEEGGHEITAFYLKIWLEDELAFL-GECPWEEDMQYVRAV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C+ +++ V ++ + + V+ + G TP P + CN +KF + D Sbjct: 60 CEELDIPLQVVPLQKEYMDRVVSYVLAELKQGRTPSPDILCNERIKFGAFFDAIDET-YD 118 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + V ++ + + R D +DQ+YFL + +Q QL FP+G + K Sbjct: 119 KVATGHYAQ----VQENEEGIFELLRAPDPVKDQTYFLSSLSQAQLSRALFPIGSLMKSR 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHNG 258 VR+LA E L + DSQ ICF+ + Y D V R + G +GDI+ + + G H G Sbjct: 175 VRELAEEYDLPNKVRKDSQGICFLGKISYPDFV-RFHLG-EKQGDIIEIETDEKKGEHKG 232 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH---RIYLREINWLGDGL 315 + +TIGQR GLG++ G P +VV D ++ V + + LE + + ++W Sbjct: 233 VWFHTIGQRSGLGLSGG-PWYVVKKDLATNIVYISHKNGLEDQLRDEVTVNTVHWTSGKF 291 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 ++ + VK+R V + + V++ + + G+A GQ+C+FY ++ Sbjct: 292 PKNTNLK-----VKLRHGPQLVEARIMDLGESRVFIKLAEKDKGIAPGQSCIFY----DD 342 Query: 375 ARVLGGGIIS 384 LG G+I Sbjct: 343 LICLGRGVIE 352 >gi|66546481|ref|XP_624200.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like [Apis mellifera] Length = 395 Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 88/279 (31%), Positives = 147/279 (52%), Gaps = 16/279 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +++V +SGG+DS+V A LLK GYDV GV ++ ++ + + G C +D A +C Sbjct: 4 KIIVGISGGIDSAVTAFLLKNKGYDVTGVFMKNWDIKNET---GKCQIDEDKEHAEWICK 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140 + + ++ + + N + Y G TP P + CN+ +KF + R +L AD Sbjct: 61 KLKIPFVEVNFVKEYWNNIFCYLTEQYENGYTPNPDILCNKYIKFDQFFNFARTKLQADA 120 Query: 141 LATGHYIRSRL--YVGDDGKRRRI-MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 +ATGHY ++ Y+ + + + DL +DQ++FL QQ L FPLG+ K Sbjct: 121 IATGHYAKTSFGPYLEHFKLNTNVKLLQAKDLGKDQTFFLCQVPQQALRYFMFPLGNYLK 180 Query: 198 ESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255 + V+ +A E+GLD I K +S ICF+ + + + + + GD + L NG+++G+ Sbjct: 181 KDVKKIAEEIGLDKIVHKKESTGICFIGKRNFQNFISEYISDKP--GDFIDLDNGKVVGK 238 Query: 256 HNGIINYTIGQRRGLGVAMGEPL--FVVYLDKNSSRVIV 292 H G +T+GQ LG G P+ F+ D S+ +IV Sbjct: 239 HKGFHYWTVGQNVKLG---GYPIAYFIYKKDIQSNNIIV 274 >gi|47678421|emb|CAG30331.1| dJ1163J1.4 [Homo sapiens] gi|109451226|emb|CAK54474.1| TRMU [synthetic construct] gi|109451804|emb|CAK54773.1| TRMU [synthetic construct] gi|119593832|gb|EAW73426.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase, isoform CRA_e [Homo sapiens] gi|162844904|emb|CAP58845.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Homo sapiens] gi|208965646|dbj|BAG72837.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [synthetic construct] Length = 376 Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 101/320 (31%), Positives = 158/320 (49%), Gaps = 38/320 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV A+SGGVDS+V A LL+R GY V GV ++ ++S G C A +D DA RVC Sbjct: 6 HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDS---LDEHGVCTADKDCEDAYRVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140 +++ + Y + + N V F + Y G TP P + CN+ +KFS LGAD Sbjct: 63 ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122 Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQ 182 +ATGHY R+ L + +++ + + + D +DQ++FL +Q Sbjct: 123 IATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQ 182 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV-----KRIN 236 L FPLG + KE V+ +A E L + K +S +CF+ + + + R Sbjct: 183 DALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPG 242 Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR- 295 I++E + ++LG H G YT+GQR +G + EP +VV D V V PR Sbjct: 243 HFISIE------DNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVAPRT 295 Query: 296 ESLEVHRIYLR--EINWLGD 313 + ++R LR ++W+ + Sbjct: 296 DHPALYRDLLRTSRVHWIAE 315 >gi|260889735|ref|ZP_05900998.1| tRNA methyl transferase [Leptotrichia hofstadii F0254] gi|260860341|gb|EEX74841.1| tRNA methyl transferase [Leptotrichia hofstadii F0254] Length = 229 Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 77/203 (37%), Positives = 115/203 (56%), Gaps = 4/203 (1%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV+ MSGGVDSSV A LLK GYDVIGV ++ + + + G C A +D D V + Sbjct: 12 KVVLGMSGGVDSSVAAILLKEQGYDVIGVFMKNWEEKDEN---GVCMAEEDYKDVIAVAE 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + +Y ++ + + + V F Y G TP P V CN+ +KF L +LGAD + Sbjct: 69 QLEIPYYSVNFVKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFRAFLDYAMKLGADYV 128 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R ++ DGK + M R +D +DQ+YFL +Q+QL + FPLG+ K +R Sbjct: 129 ATGHYARI-IHEEKDGKIKSTMLRGIDDNKDQTYFLCQLSQEQLEKVLFPLGEYTKPQIR 187 Query: 202 DLAREMGLDIADKSDSQDICFVQ 224 ++A + L A K Q+ ++ Sbjct: 188 EIAEKYNLVTAKKKTVQESALLE 210 >gi|195043220|ref|XP_001991577.1| GH11989 [Drosophila grimshawi] gi|193901335|gb|EDW00202.1| GH11989 [Drosophila grimshawi] Length = 381 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 118/390 (30%), Positives = 185/390 (47%), Gaps = 31/390 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDS+V A LLK G +V+GV ++ ++ G C QD+ DA C Sbjct: 4 RVVVGMSGGVDSAVSAHLLKERGLNVLGVFMRNWDEHD---EIGRCTGEQDLKDAEWACR 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--SVTRQLGAD 139 + + +Y +++ AV F Y G TP P + CN+ +KF DL L D Sbjct: 61 QLQIELRQVNYVKQYWTAVFSQFLDDYQQGLTPNPDILCNKHIKF-DLFHRHALDTLQYD 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRI--------MCRPMDLERDQSYFLFATTQQQLCDLRFP 191 +ATGHY R+ L GD + R + P D +DQ++FL Q L FP Sbjct: 120 AVATGHYARNSL--GDYLEHRSTDQQKADVRLLIPADTFKDQTFFLAGIPQTALQFTMFP 177 Query: 192 LGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN- 249 LG + K V+ LAR +GL +A K +S ICFV + + ++ + G V ++ Sbjct: 178 LGGLLKTEVKQLARRIGLQRLAVKRESTGICFVGKRDFKAFIREYIS--CKPGHFVDVDS 235 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 G+++G H GI +T+GQR L + +P FV D S+ + V +L RI + Sbjct: 236 GEVVGNHEGIHQWTVGQRCRLSSYL-QPYFVARKDAASNTIFVAAGHDHPALHSIRIRIG 294 Query: 307 EINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 + NWL + + G +C + + ++ V +++ + V + + GQ Sbjct: 295 DFNWLCNRARQQLATSGSLRCRFRFQHTKPVVECWLRPFE----VLLDAPLRAITPGQYA 350 Query: 366 VFY--TSDSNEARVLGGGIISGSKRSDAVE 393 VFY + AR+L + ++ A+E Sbjct: 351 VFYDDVACLGSARILCAEPLQQMEQQAALE 380 >gi|210635362|ref|ZP_03298498.1| hypothetical protein COLSTE_02429 [Collinsella stercoris DSM 13279] gi|210158425|gb|EEA89396.1| hypothetical protein COLSTE_02429 [Collinsella stercoris DSM 13279] Length = 405 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 85/226 (37%), Positives = 121/226 (53%), Gaps = 14/226 (6%) Query: 168 DLERDQSYFLFATTQQQLCDLRFPLGDMKKE-SVRDLAREMGLDIADKSDSQDICFVQQG 226 D +DQSY L++ TQ++L PLG + KE VR +ARE G + A K DSQ ICFV Sbjct: 179 DPSKDQSYVLYSLTQERLAHTLLPLGGLFKERDVRRIAREQGFENASKRDSQGICFVPGN 238 Query: 227 KYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKN 286 + ++R EGDIV+ G++LGRH G I YT+GQR+GLGVA P++V +D Sbjct: 239 DFATYIERRRGAALPEGDIVNTRGEVLGRHQGAIRYTVGQRKGLGVACAHPVYVTGIDAQ 298 Query: 287 SSRVIVGPRESLEVHRIYLREINW-----LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341 ++ V +G E L + + W + + L ++A +G KIR P + Sbjct: 299 ANTVTLGEVEDLMASGLVANDWIWSAPAQIMEDLLDEAGAEGLPVSAKIRYRHPAQPARL 358 Query: 342 QRNDDG----VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 +R DG + + F+ E GVA GQA V Y + VLGGG + Sbjct: 359 RRAADGQDGYLEIAFDDPERGVAPGQAVVVYAGEV----VLGGGTV 400 Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 37/86 (43%), Positives = 46/86 (53%) Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 G+C +G D DA + + SH V D F V+ F +Y G TP PC+DCNR + Sbjct: 3 GACGSGSDADDAAAIARRLGFSHEVIDLRATFERRVVEKFVRTYEQGRTPNPCIDCNRHL 62 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSR 150 KF LL R G D +ATGHY R R Sbjct: 63 KFDALLDYARDHGCDYIATGHYARIR 88 >gi|255086163|ref|XP_002509048.1| predicted protein [Micromonas sp. RCC299] gi|226524326|gb|ACO70306.1| predicted protein [Micromonas sp. RCC299] Length = 478 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 109/319 (34%), Positives = 160/319 (50%), Gaps = 34/319 (10%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + ++V V +SGGVDSSV LLK G+D + LQ++ +C D+ AR Sbjct: 14 RKLKVAVLLSGGVDSSVALTLLKAAGHDCVAFYLQIWFVEDFRNTWDACPWEDDLNVARG 73 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF---SDLLSVTRQ 135 VC+ ++V V ++ + V+ + G TP P + CN VKF +D L R Sbjct: 74 VCEHLDVPLEVVPLTNQYWDLVVKHSIEQISRGRTPNPDMLCNSRVKFGAFTDWLETNRA 133 Query: 136 LGADVLATGHY--------IRSRLYVGDDG---KRRRIMCRPM---DLERDQSYFLFATT 181 +A+GHY I + GDDG RR CR + D +DQ+YFL + Sbjct: 134 GEFHRVASGHYAAMDRVQGILADTLHGDDGMNGTSRRHPCRLIMSGDARKDQTYFLAHLS 193 Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-----KRIN 236 Q+QL L FP+G + K +R++AR GL A++ DSQ ICF+ + K+ + V +R Sbjct: 194 QRQLAALTFPIGGLPKTQIREIARSAGLPNAERKDSQGICFLGKVKFSEFVAEHLGERPG 253 Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE 296 A + LE G LG H+G +TIGQR GLG++ G P +V D + V V R+ Sbjct: 254 AIVELE------TGTRLGTHSGFWFHTIGQRSGLGLS-GGPWYVAAKDVPGNVVYV-TRD 305 Query: 297 --SLEVHRIYLR--EINWL 311 S++ R R E +WL Sbjct: 306 YYSVDKERNTFRVGEFSWL 324 >gi|322802160|gb|EFZ22595.1| hypothetical protein SINV_00348 [Solenopsis invicta] Length = 417 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 100/306 (32%), Positives = 157/306 (51%), Gaps = 22/306 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV +SGGVDS+V A LLK G++V GV ++ ++ R + G C +D DAR +CD Sbjct: 5 VVVGISGGVDSAVAAFLLKIKGFNVTGVFMKNWDIRDET---GKCMVEKDYDDARWICDK 61 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADVL 141 + + ++ + + N V Y G TP P + CN+ +KF + R + AD + Sbjct: 62 LKIPLIQVNFVKEYWNEVFSDIVEKYQNGYTPNPDILCNKNIKFDKFFHLARNRFQADAI 121 Query: 142 ATGHYIRSRL------YVGDDGK---RRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 ATGHY ++ Y + K R++ + D +DQ++FL Q+ L FPL Sbjct: 122 ATGHYAKTSFGAYLENYEANKSKYLLNVRLL-QAQDSNKDQTFFLSQVPQETLRHCMFPL 180 Query: 193 GDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-G 250 G K V+ +A E GL IA K +S ICFV + ++ + A GD + L+ G Sbjct: 181 GTHLKNHVKMMATEAGLCQIARKKESMGICFVGKREFQHFISEYIADKP--GDYIDLDSG 238 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307 ++G+H+GI TIGQR + + +P +V D+ S+ VIV +L + RE Sbjct: 239 LLIGKHDGIHKRTIGQRCNISGCL-KPYYVFSKDQESNTVIVVGGTTHPALYSDFLITRE 297 Query: 308 INWLGD 313 I+W+ + Sbjct: 298 IHWINE 303 >gi|47459275|ref|YP_016137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma mobile 163K] gi|81614195|sp|Q6KHK4|MNMA_MYCMO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|47458604|gb|AAT27926.1| tRNA-methyltransferase (5-methylaminomethyl-2-thiouridylate) [Mycoplasma mobile 163K] Length = 370 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 105/379 (27%), Positives = 181/379 (47%), Gaps = 35/379 (9%) Query: 22 RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73 ++VVA+SGGVDSSV A +LK + ++VI V ++ ++S + G+ C +D Sbjct: 3 KIVVALSGGVDSSVTAFILKYQQNHEVIAVFMRNWDSFANNDILGNEDINQDICPQEKDW 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-V 132 DA+++ +N+ Y D+ + + + V Y G TP P + CN+ +KF + V Sbjct: 63 EDAKKIASQLNIPIYRVDFVKEYYDEVFTYLIEEYRQGRTPNPDIFCNKYIKFGKFIEYV 122 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + D +ATGHY + ++ R D +DQSYFL + QL + FPL Sbjct: 123 EKNFNPDFIATGHYAKVE---------NSLLYRAKDRNKDQSYFLSQLSSDQLKKIIFPL 173 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQ 251 D+ K+ +R +A E L A K DS ICF+ + + ++ N + G+IV + + Sbjct: 174 KDLTKDVIRKIAAENNLVTAQKKDSTGICFIGERNFDKFLQ--NYIPNMPGNIVDIETNE 231 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREI 308 ++G+H G++ YT+GQR+ M P +V D + + V S L+ ++ E Sbjct: 232 VVGQHVGVMYYTLGQRKINLSGMKYPYYVAGHDLKNKILYVASIHSKNYLKSDKLEAIEF 291 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVF 367 N + + + K R Q+ + + + D + + + + V GQ V Sbjct: 292 NLINKNFNKKNLT------AKFRYRQEDIKIEILNIDKNKIEISYPDEFEAVTPGQHVVI 345 Query: 368 YTSDSNEARVLGGGIISGS 386 Y +S +GGGII+ + Sbjct: 346 YDGES----CVGGGIINKT 360 >gi|255712651|ref|XP_002552608.1| KLTH0C08844p [Lachancea thermotolerans] gi|238933987|emb|CAR22170.1| KLTH0C08844p [Lachancea thermotolerans] Length = 426 Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 117/402 (29%), Positives = 193/402 (48%), Gaps = 45/402 (11%) Query: 23 VVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+AMS GVDSSV AA+ G+ + G+ +Q + ++ + C +D D ++V Sbjct: 36 IVIAMSSGVDSSVAAAMF--SGFPNACGIYMQNWTETRSEREP---CHERDWKDVQKVGA 90 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTRQLGA 138 +N+ ++E+ + V P Y G TP P + CNR +KF L L + G Sbjct: 91 HLNLPVEKVNFEQDYWLDVFEPMLRDYEQGVTPNPDIGCNRFIKFGKLRAHLDASLGTGN 150 Query: 139 DVLATGHYIRSRLYVGDD---GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L TGHY SR+ + G + R +DQSY+L L L P+G + Sbjct: 151 YWLVTGHY--SRVLQTESKALGLNSWHLLRAFYAPKDQSYYLSQVPSAALPALCLPMGVL 208 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQI-- 252 K VR++A ++ L A K DSQ ICFV ++ + + + I + G+I+ L+ Sbjct: 209 TKPEVREMAHDLRLPTAHKPDSQGICFVANSQHGKISRFLEQYIPSHAGEIITLDPITGE 268 Query: 253 ---LGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIVGP---RESLEVH 301 GRH G+ NYTIGQ+ G+ + G+P FV +++ +++ SL + Sbjct: 269 RTEWGRHTGLWNYTIGQKVGISMPQGDPRYQGAWFVADKRVDTNEIVICKGRDNPSLYKN 328 Query: 302 RIYLREINWLGD-GLFEDAV---VDGFKCFVKIRSSQDPVPV------FVQRNDDGVYVD 351 R+ L++ + LG+ ++AV + G ++ RS Q+P V + + + + Sbjct: 329 RVVLKDFSPLGNLNDVQEAVKNNLAGGAIHIQYRSLQEPAKVSRCCWETTEAGESRLVMT 388 Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVE 393 E+ + +A GQ C Y ++ R+LG G I SDAVE Sbjct: 389 LEQKQRAMAPGQYCTIY----HKERILGSGTILA---SDAVE 423 >gi|291229392|ref|XP_002734665.1| PREDICTED: tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase-like [Saccoglossus kowalevskii] Length = 390 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 91/282 (32%), Positives = 145/282 (51%), Gaps = 15/282 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V MSGGVDSSV A LLKR G+ V G+ ++ ++S S G C D DA+ VCD Sbjct: 9 HIVCGMSGGVDSSVAALLLKRQGFRVTGLFMKNWDSLDES---GICSTEGDYNDAQFVCD 65 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140 +++ + + + + + V F Y G TP P + CN+ +KF L+ + A Sbjct: 66 KLDIPLHQVSFVKEYWHDVFSNFLKEYENGTTPNPDILCNKLIKFDKFLNYAMKNFDAHA 125 Query: 141 LATGHYIR-----SRLYVGDDGKRRRI-MCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LATGHY R S L + K+ I + + +D +DQ++FL +Q L FPLG+ Sbjct: 126 LATGHYARTSGGYSVLTNPESVKKNGIALLKGLDANKDQTFFLSQISQNALQKTIFPLGE 185 Query: 195 MKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252 + K+ V+++A G + I K +S ICF+ K+ ++ + G+ V + +G I Sbjct: 186 LMKKEVKEIALRAGFERIVKKKESMGICFIGTRKFQSFIQEYLETAS--GNFVSVEDGTI 243 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP 294 +G H G YT+GQR +G + F+ + D + + V P Sbjct: 244 MGDHKGCHLYTVGQRSNIG-GQSQAWFICHKDSTTQTIYVAP 284 >gi|158300718|ref|XP_320574.3| AGAP011960-PA [Anopheles gambiae str. PEST] gi|157013296|gb|EAA00244.3| AGAP011960-PA [Anopheles gambiae str. PEST] Length = 377 Score = 143 bits (360), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 115/381 (30%), Positives = 194/381 (50%), Gaps = 36/381 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDS+V A LLK+ G++V G ++ ++ S G C QD DA+R+C Sbjct: 4 RVVVGISGGVDSAVSAYLLKKRGFEVCGAFMKNWDLIDES---GYCSGEQDFEDAQRLCR 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 T+N+ ++ + + V F Y AG TP P + CNR +KF+ R+ LGAD Sbjct: 61 TLNIPLEEINFVKDYWVEVFGNFLKDYEAGITPNPDILCNRHIKFNRFFHHARERLGADA 120 Query: 141 LATGHYIRSR----LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 +ATGHY R+ L ++ ++ R++ P D +DQ++FL + + L FP+G + Sbjct: 121 IATGHYARTNFGPFLERYNENEKVRLLMAP-DPIKDQTFFLSQISAEALRRTMFPIGALT 179 Query: 197 KESVRDLAREMGLD-IADKSDSQDICFV-----QQ--GKYFDVVKRINAGIALEGDIVHL 248 K V+ LA E+GL+ A K +S ICFV QQ G+Y + G ++ D Sbjct: 180 KPQVKRLAIEVGLEAYARKKESMGICFVGKRSFQQFIGEYIET----KPGPFVDVD---- 231 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 +G+ +G+H G+ ++T+GQ+ +G +P +V+ + S+ + V L +Y Sbjct: 232 SGREVGQHAGLHHWTVGQKCKIG-GCPQPYYVLRKHRASNVIEVASGHDHPLLYTDMVYT 290 Query: 306 REINWLG--DGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASG 362 W+ GL + V +C + + ++ V ++ + ++V ++ + G Sbjct: 291 ERPVWINAPPGLSSEGRV--VRCEFRFQHTKPLVGCSVIETHGRQLFVKLDRPLRAITPG 348 Query: 363 QACVFYTSDS--NEARVLGGG 381 Q VFY ++ AR+L G Sbjct: 349 QYAVFYRNEECFGSARILQPG 369 >gi|323355773|gb|EGA87587.1| Slm3p [Saccharomyces cerevisiae VL3] Length = 349 Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 94/269 (34%), Positives = 138/269 (51%), Gaps = 16/269 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVCD 81 V+VAMS GVDSSV AAL + + GV +Q ++ ++ G C +D D RV Sbjct: 29 VIVAMSSGVDSSVAAALFAGEFPNTRGVYMQNWSESQSLDDPGKEPCYERDWRDVNRVAK 88 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTRQLGA 138 +N+ ++E+ + V P Y+ G TP P + CN+ VKF L L G Sbjct: 89 HLNIRVDKVNFEQDYWIDVFEPMLRGYSEGSTPNPDIGCNKFVKFGKLREWLDEKYGTGN 148 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 L TGHY +R+ +GK + R + +DQSY+L L L P+G + K Sbjct: 149 YWLVTGHY--ARVMQEMNGKGLFHLLRSIYRPKDQSYYLSQINSTVLSSLLLPIGHLTKP 206 Query: 199 SVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLNGQ---- 251 VRDLA+ GL A+K DSQ ICFV Q GK+ + +K + GDI+ ++ Q Sbjct: 207 EVRDLAKYAGLPTAEKPDSQGICFVNNSQHGKFKNFLKHYLP--SSPGDIITVDPQSGAK 264 Query: 252 -ILGRHNGIINYTIGQRRGLGVAMGEPLF 279 GRH+G+ +YTIGQ+ G+ + +P + Sbjct: 265 TTWGRHDGLWSYTIGQKVGISMPQADPNY 293 >gi|323334236|gb|EGA75618.1| Slm3p [Saccharomyces cerevisiae AWRI796] Length = 362 Score = 142 bits (358), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 94/269 (34%), Positives = 138/269 (51%), Gaps = 16/269 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRVCD 81 V+VAMS GVDSSV AAL + + GV +Q ++ ++ G C +D D RV Sbjct: 29 VIVAMSSGVDSSVAAALFAGEFPNTRGVYMQNWSESQSLDDPGKEPCYERDWRDVNRVAK 88 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL---LSVTRQLGA 138 +N+ ++E+ + V P Y+ G TP P + CN+ VKF L L G Sbjct: 89 HLNIRVDKVNFEQDYWIDVFEPMLRGYSEGSTPNPDIGCNKFVKFGKLREWLDEKYGTGN 148 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 L TGHY +R+ +GK + R + +DQSY+L L L P+G + K Sbjct: 149 YWLVTGHY--ARVMQEMNGKGLFHLLRSIYRPKDQSYYLSQINSTVLSSLLLPIGHLTKP 206 Query: 199 SVRDLAREMGLDIADKSDSQDICFV---QQGKYFDVVKRINAGIALEGDIVHLNGQ---- 251 VRDLA+ GL A+K DSQ ICFV Q GK+ + +K + GDI+ ++ Q Sbjct: 207 EVRDLAKYAGLPTAEKPDSQGICFVNNSQHGKFKNFLKHYLP--SSPGDIITVDPQSGAK 264 Query: 252 -ILGRHNGIINYTIGQRRGLGVAMGEPLF 279 GRH+G+ +YTIGQ+ G+ + +P + Sbjct: 265 TTWGRHDGLWSYTIGQKVGISMPQADPNY 293 >gi|270011194|gb|EFA07642.1| hypothetical protein TcasGA2_TC030543 [Tribolium castaneum] Length = 365 Score = 142 bits (358), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 116/376 (30%), Positives = 180/376 (47%), Gaps = 46/376 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDS+ GV +Q ++ + KG C A D DA VCD Sbjct: 6 KVVVGISGGVDSA--------------GVFMQNWD---IADEKGYCSADADYKDAALVCD 48 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140 +++ ++ + + N V Y G TP P V CNR +KF+ R +LGAD Sbjct: 49 KLDIKLTHVNFVKHYWNEV--NLIKEYETGNTPNPDVLCNRNIKFNYFYKYARNELGADA 106 Query: 141 LATGHYIRSRL------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 +ATGHY R+ Y + G R + +D +DQ++FL Q+ L FPLGD Sbjct: 107 IATGHYARTSFGSYLEHYNPEKGVR---LLNAVDWFKDQTFFLCQVNQEALQRTMFPLGD 163 Query: 195 MKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQI 252 + K V+ +ARE GL+ IA K +S ICF+ K+ D ++ GD V ++ ++ Sbjct: 164 LMKPEVKKIARENGLEKIARKKESMGICFIGNRKFQDFIREYIDDKP--GDFVDVDTAKV 221 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVY--LDKNSSRVIVGPRESLEVHRIYL-REIN 309 +G+HNG+ +T+GQR L + P FV +DKN V+ G + L I L E + Sbjct: 222 VGQHNGVHQWTLGQRARLH-SYESPYFVARKDVDKNIIYVVKGTKHPLLYTNIILTSEPH 280 Query: 310 WLGDGL--FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 W+ ++ V++ C K + ++ V V + G+ + + + + GQ V Sbjct: 281 WIHSQPPDLQNGVLE---CDFKFQHTKYWVKCQVCQTSKGLIIKVNRYKRAITPGQFAVL 337 Query: 368 YTSDSNEARVLGGGII 383 S + LGG I Sbjct: 338 ----SKDGECLGGARI 349 >gi|241950493|ref|XP_002417969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Candida dubliniensis CD36] gi|223641307|emb|CAX45687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Candida dubliniensis CD36] Length = 424 Score = 142 bits (358), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 124/388 (31%), Positives = 188/388 (48%), Gaps = 43/388 (11%) Query: 17 NPK-DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 PK D ++VAMS GVDSSV AAL K D +V G+ + A+ + + C +D D Sbjct: 57 TPKPDDHIIVAMSSGVDSSVCAALFK-DYPNVHGLYM-------ANWSQSATCTERDWKD 108 Query: 76 ARRVCDTINVSH-YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 +RVC + +S ++E + + V VP Y G TP P + CN+ VKF L+ Sbjct: 109 VQRVCRDLGISSCERVNFEHEYWHDVFVPMIEKYEKGLTPNPDIGCNKFVKFGKLIDYLH 168 Query: 135 QL--GAD-VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + G D L TGHY R + + G+ + R + +DQSY+L + + L + P Sbjct: 169 EKYDGKDWWLVTGHYARIMKH-NETGEYH--LLRGLSQRKDQSYYLSSIPPRSLSKILLP 225 Query: 192 LGDMKKESVRDLARE-MGLDIADKSDSQDICFV--QQGKYFDVVKRINAGIALE-GDIVH 247 +G K +R LA + L A K DSQ +CFV QQ + + +N I GDIV Sbjct: 226 IGHYIKPQIRKLAHDRFQLHTATKPDSQGLCFVNPQQSNFREF---LNDYIPENPGDIVT 282 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIV-----GPRES 297 +G++ GRH G+ + TIGQ+ + + +P FV + +++I+ PR Sbjct: 283 EDGKVWGRHKGLWHATIGQKSSVCMPQADPKYQGIWFVSDKNYEKNQIIIVKGHDNPR-- 340 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSE 356 L + L ++ WL ++ V+ + S +PV V + D + V+ E Sbjct: 341 LFKQTVELTQLEWLCP---KEEVIHLRGLQFQYHSLSKSIPVKRVIDSGDKLVVELETPV 397 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384 +A GQA V Y N RVLGGG+IS Sbjct: 398 RALAPGQAGVLY----NGNRVLGGGMIS 421 >gi|114686941|ref|XP_515202.2| PREDICTED: tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase 1 isoform 2 [Pan troglodytes] Length = 435 Score = 142 bits (358), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 119/409 (29%), Positives = 186/409 (45%), Gaps = 64/409 (15%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV A+SGGVDS+V A LL+R GY V GV ++ ++S G C A +D DA RVC Sbjct: 6 HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLD---EHGVCTADKDCEDAYRVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140 +++ + Y + + N V F + Y G TP P + CN+ +KFS LGAD Sbjct: 63 ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122 Query: 141 LATGHY---------IRSRLYVGDDGKRRRIMC--------------RPMDLERDQSYFL 177 +ATGHY +R+RL++ +++C + D +DQ++FL Sbjct: 123 IATGHYARTSLEDHEVRTRLHLKKKSGLWKVLCFRGDWSAELAVKLLQAADSFKDQTFFL 182 Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV---- 232 +Q L FPLG + KE V+ +A E L + K +S +CF+ + + + Sbjct: 183 SQVSQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYL 242 Query: 233 -KRINAGIALEGDIVHLNGQILGRHNGIINY---------TIGQRRGLGVAMGEPLFVVY 282 R I++E + ++LG H G + + RG + EP + Sbjct: 243 QPRPGHFISIE------DNKVLGTHKGWNVFLSPLGCLVPPLCFYRGTVGCLREPC-MCE 295 Query: 283 LDKNSSRVIVGPR-ESLEVHRIYLR--EINWLGD----GLFEDAVVDGFKCFVKIRSSQD 335 D V V PR + ++R LR ++W+ + L D +++ C + R Sbjct: 296 KDSVKGNVFVAPRTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMME---CHFRFRHQMA 352 Query: 336 PVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 VP + N DG V+V ++ +A+GQ VFY D LG G I Sbjct: 353 LVPCVLTLNQDGTVWVTAVQAVRALATGQFAVFYKGDE----CLGSGKI 397 >gi|195438780|ref|XP_002067310.1| GK16353 [Drosophila willistoni] gi|194163395|gb|EDW78296.1| GK16353 [Drosophila willistoni] Length = 380 Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 114/384 (29%), Positives = 187/384 (48%), Gaps = 26/384 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV +SGGVDS++ A LLK GY+V+GV ++ ++ + G C D+ DA C Sbjct: 5 VVVGISGGVDSAISAHLLKERGYNVLGVFMRNWDENDEA---GRCSGELDLKDAEWACQR 61 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVL 141 +++ +Y +++ AV F Y G TP P + CN+ +KF + R+ L D + Sbjct: 62 LDIELRQVNYVKQYWMAVFTQFLDDYQQGLTPNPDILCNKHIKFDLFHTHCRERLQYDAV 121 Query: 142 ATGHYIRSRL--YVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 ATGHY + Y+ G+ R++ P D +DQ++FL +Q+ L FPLG M K Sbjct: 122 ATGHYAANSWGNYLEQQLQGEEPRLLI-PQDKFKDQTFFLSGISQRSLRHTMFPLGCMLK 180 Query: 198 ESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGR 255 V+ LAR++GL +A+K +S ICFV + + + + G + ++ G +G+ Sbjct: 181 TEVKQLARQIGLQRLAEKRESTGICFVGKRNFKSFIGEYLS--PRPGPFIDIDTGCEVGQ 238 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 H GI +TIGQR L + +P FV + + + V +L +R+ + INWL Sbjct: 239 HEGIHQWTIGQRCRLSSFL-QPYFVARKEPLRNIIYVASGHEHPALHSNRLTIDPINWLC 297 Query: 313 DGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 V +G +C + + ++ V + + V + + GQ VFY Sbjct: 298 STAKTRYVQEGRLRCRFRFQHTKPLVNCSIIEEE----VVLDSPLRAITPGQYAVFY--- 350 Query: 372 SNEARVLGGGIISGSKRSDAVEES 395 ++ LG I SK D +E+ Sbjct: 351 -DDQACLGSARILRSKPLDQLEQQ 373 >gi|323214164|gb|EFZ98924.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] Length = 230 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 89/242 (36%), Positives = 138/242 (57%), Gaps = 13/242 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + ++PK +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ Sbjct: 1 MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADL 55 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 56 ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + LGAD +ATGHY+R R V +GK R + R +D +DQSYFL+ +Q+ FP+ Sbjct: 116 AEDLGADYIATGHYVR-RADV--NGKSR--LLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR +A ++GL A K DS ICF+ + K+ D + R A G I+ ++G Sbjct: 171 GELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDE 228 Query: 253 LG 254 +G Sbjct: 229 IG 230 >gi|242018594|ref|XP_002429759.1| methyltransferase, putative [Pediculus humanus corporis] gi|212514771|gb|EEB17021.1| methyltransferase, putative [Pediculus humanus corporis] Length = 401 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 109/377 (28%), Positives = 188/377 (49%), Gaps = 32/377 (8%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V V +SGGVDS+V A LLK+ GY+VIGV ++ ++ G C +D+ A+ C+ Sbjct: 7 VAVGISGGVDSAVAALLLKKRGYNVIGVYMKNWD---LVDENGICSTSEDLEYAKYTCNQ 63 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVL 141 I++ + ++ + + N V V F Y G TP P + CN+ +KF+ + ++L AD + Sbjct: 64 IDIPFHEVNFVKEYWNNVFVAFTKEYEDGYTPNPDILCNKYIKFNAFSNYAFKKLRADAI 123 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPM---DLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 ATGHY ++ + + + + + D+ +DQ++FL Q+ L FPLGD+ K Sbjct: 124 ATGHYAKTSFGNFLENYKPQTKAKLLVAKDIIKDQTFFLSQIPQETLKKTIFPLGDLHKS 183 Query: 199 SVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRH 256 V+ +A E + ++ K +S ICF+ + + + G +++ G+ G+H Sbjct: 184 EVKKIAEENDMKKLSRKPESMGICFIGSRNFQTFIDQYIK--PKPGKFINMITGKEEGKH 241 Query: 257 NGIINYTIGQR---RGLGVAMGEPLFVVYLDKNSSR--VIVGPRESLEVHRIYLRE-INW 310 +GI +T+GQR +G V P FVV D ++ V+ G SL I++ E W Sbjct: 242 DGIHMWTVGQRCRIKGFSV----PRFVVKKDPTTANIWVVAGTNHSLLYSYIFVTEKPYW 297 Query: 311 LGD---GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 + + L+ V FK F ++S+ + + ++ +D + V +K + GQ VF Sbjct: 298 IAEPPNNLYYGCKVH-FK-FQHVKSTTNCQVISIK--NDNLLVIIDKPLRALTQGQYAVF 353 Query: 368 YTSDSNEARVLGGGIIS 384 Y E LG I+ Sbjct: 354 Y----QENECLGSARIT 366 >gi|75761642|ref|ZP_00741591.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490863|gb|EAO54130.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 269 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 99/273 (36%), Positives = 141/273 (51%), Gaps = 16/273 (5%) Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 CN+ +KF L LGAD +ATGHY R DG+ + M R +D +DQ+YFL Sbjct: 2 CNKEIKFKAFLEHAIALGADYVATGHYARVAYM---DGEYK--MLRGVDDNKDQTYFLNQ 56 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 +Q+QL FPLG++KK +R++A+E GL A K DS ICF+ + + D + N Sbjct: 57 LSQEQLSKTMFPLGELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLS--NYLP 114 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G + L+G++ G+H+G++ YTIGQR GLG+ G+P F V KN I+ + Sbjct: 115 AQPGVMQTLSGEVKGKHDGLMYYTIGQRHGLGIGGNGDPWFAV--GKNLKENILYVDQGF 172 Query: 299 EVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSE 356 +Y E+ G + V + FKC K R Q+ V VQ D+ V + ++ Sbjct: 173 HNELLYGDEVIATNVGWVSNKVKETEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPI 232 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389 + GQA VFY D LGG I RS Sbjct: 233 RAITPGQAVVFYDGD----ECLGGATIDEVYRS 261 >gi|281420586|ref|ZP_06251585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella copri DSM 18205] gi|281405359|gb|EFB36039.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella copri DSM 18205] Length = 360 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 116/370 (31%), Positives = 175/370 (47%), Gaps = 22/370 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD R+ V +SGGVDSSVV + G +++ K + C + +D+ A Sbjct: 8 KDKRIAVLLSGGVDSSVVVWEFAQLGLHPDCFYIKI---GPEEKEEWDCSSEEDLEMATA 64 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V V D + N V AG TP P V CNR +KF + ++G Sbjct: 65 VARKYGCKLQVVDCHHEYWNEVTRYTMEKVKAGFTPNPDVMCNRLIKFG---AFDEKMGH 121 Query: 139 --DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 D++ATGHY ++ D+ + ++ P D +DQ+ FL QL FP+G Sbjct: 122 NYDLIATGHYAQTET---DENGDKWLVTSP-DPVKDQTDFLAQIESWQLKKAIFPIGHHI 177 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255 K VR++A E L A + DSQ ICF+ Q Y D ++R GD++ + G+ +G Sbjct: 178 KNEVREIAEEEHLINAKRKDSQGICFLGQINYNDYIRRYLG--EKPGDVIEMETGKRIGE 235 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H G+ +TIGQR+GLG G P FV+ D ++ + V + Y ++ L D Sbjct: 236 HKGLWFHTIGQRKGLGFGGG-PWFVIKKDVENNILYVS--HGYDPQSAYKKDFP-LHDFH 291 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNE 374 F V K KIR + + P +++ +DG + + E++ GVA GQ CV Y D + Sbjct: 292 FLTREVAMQKVTFKIRHTPEYHPATIEKLEDGRWMIHSEEAIHGVAPGQFCVVY--DEHH 349 Query: 375 ARVLGGGIIS 384 R G G I+ Sbjct: 350 HRCYGSGEIT 359 >gi|302828090|ref|XP_002945612.1| hypothetical protein VOLCADRAFT_55676 [Volvox carteri f. nagariensis] gi|300268427|gb|EFJ52607.1| hypothetical protein VOLCADRAFT_55676 [Volvox carteri f. nagariensis] Length = 402 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 119/384 (30%), Positives = 176/384 (45%), Gaps = 32/384 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 + V V +SGGVDSS+ LL+ G+ LQ++ G+C +D+ AR+VC Sbjct: 5 LNVAVLLSGGVDSSLALRLLRAAGHTCHAFYLQIWFQEDFRNFWGACPWEEDLQYARQVC 64 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS---DLLSVTRQLG 137 +++ V V + + V+ AG TP P + CN VKF D L T Sbjct: 65 ESLGVPLEVVPLTTEYWDRVVSGSVEEIRAGRTPNPDMWCNSRVKFGAFYDYLDRTYGAA 124 Query: 138 ADVLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 D +A+GHY R R+ R++ P D +DQ+YFL + +QL + FPLG + Sbjct: 125 FDRVASGHYARVERVPRRSSPAEVRLLLTP-DAVKDQTYFLANLSPRQLSRVMFPLGCLT 183 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQIL 253 K VR LA L ++ DSQ ICF+ + K+ + V+ G LE + GQ L Sbjct: 184 KSQVRKLAAAADLANKNRKDSQGICFLGKVKFHEFVREHLGEWPGPILEAE----TGQPL 239 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR----IYLREIN 309 G H G YT+GQR G+ + G P +VV D + V+V R+ + + N Sbjct: 240 GLHQGYWFYTVGQRGGIKLP-GGPWYVVAKDTLRNAVLVS-RQYYDADKQRNTFTCGPFN 297 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND---DGVY-------VDFEKSEVGV 359 WL D FVK+R ++ +D DG Y V +++ G+ Sbjct: 298 WLDAATRPDPDPRAGPLFVKVRHGPSMYCCELRLHDARGDGSYGNDSYGTVVLAQNDQGL 357 Query: 360 ASGQACVFYTSDSNEARVLGGGII 383 A+GQ VFY + R LG +I Sbjct: 358 AAGQYAVFY----QDGRCLGCAVI 377 >gi|326428152|gb|EGD73722.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salpingoeca sp. ATCC 50818] Length = 518 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 99/322 (30%), Positives = 157/322 (48%), Gaps = 39/322 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV V MSGGVDS+V AALLK+ G+DV G ++ ++ ++ + C + + +R+C+ Sbjct: 50 RVAVGMSGGVDSTVAAALLKQQGWDVHGFFMRNWDEKE---ERNVCTSEAEYASVQRICN 106 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ D+ + N V P +Y AG TP P V CN +KF R LG D + Sbjct: 107 RLSIPCQRVDFVADYWNDVFTPTVHAYEAGITPNPDVLCNAHIKFDAFYDYVRNLGFDWV 166 Query: 142 ATGHYIRS------RLYVGDDGKRR---------------------RIMCRPMDLERDQS 174 ATGHY R+ L+ D + + ++ R +D +DQ+ Sbjct: 167 ATGHYARTTTINSDSLHTQDLHQEKQQQQQPQQQQQQQQQQRQRGVTLLRRAVDAHKDQT 226 Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVK 233 YFL T Q+L + FP+G M K V+ AR +G ++A++ +S +CFV + K+ + Sbjct: 227 YFLAGTPSQRLAHVLFPIGHMHKADVKAYARNLGFPELAEQKESMGMCFVGKRKFAHFLS 286 Query: 234 RINAGIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVI 291 A +L G V + G +G+ + T+GQ G VA +P FVV D ++ V Sbjct: 287 SYTAA-SLAGQFVDVETGACVGQGQSAMLLTMGQ--GARVAGCPQPYFVVGKDMSTHTVY 343 Query: 292 VGPRES---LEVHRIYLREINW 310 V P + L R + E+ W Sbjct: 344 VAPGDQHPLLYSARFGVGELTW 365 >gi|300121184|emb|CBK21565.2| unnamed protein product [Blastocystis hominis] Length = 475 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 98/294 (33%), Positives = 152/294 (51%), Gaps = 19/294 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V V +SGG+DSSV A LL + GYDV GV ++ +++ + + K C D DAR V + Sbjct: 137 VFVGLSGGIDSSVSAYLLLKQGYDVKGVFMKNWSAEEETG-KPLCPLKDDFIDARNVAEF 195 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + +D+E+ + V ++++G TP P V CNR +KF GAD +A Sbjct: 196 LGIPLITYDFEKEYWTNVFEVCLDAFSSGLTPNPDVLCNRYIKFDAFAHRCFHEGADYIA 255 Query: 143 TGHYIRSR----LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 TGHY R+ L +G + R +D +DQSYFL L + FP+G M K Sbjct: 256 TGHYCRTNQGKPLSPFSEGIE---LLRGIDKSKDQSYFLSQINHSLLSRVLFPVGGMTKT 312 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +VR LA E+GL A K +S ICF+ + + + A G I ++G+ +G+H+G Sbjct: 313 AVRRLAEEVGLPNARKEESMGICFIGERNMKSFLNEYLS--ASPGKIRTIDGREIGKHDG 370 Query: 259 IINYTIGQRRGLGVAMG---EPLFVVYLDKNSSRVIVGP--RESLEVHRIYLRE 307 I+ +TIGQ GV + E +V + ++ +IV P +L H Y+ + Sbjct: 371 ILFFTIGQ----GVKIPNQREKYYVCQKNAQTNELIVCPGNHPALFRHDFYVAQ 420 >gi|194379662|dbj|BAG58183.1| unnamed protein product [Homo sapiens] Length = 328 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 97/300 (32%), Positives = 148/300 (49%), Gaps = 37/300 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV A+SGGVDS+V A LL+R GY V GV ++ ++S G C A +D DA RVC Sbjct: 6 HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLD---EHGVCTADKDCEDAYRVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140 +++ + Y + + N V F + Y G TP P + CN+ +KFS LGAD Sbjct: 63 ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122 Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQ 182 +ATGHY R+ L + +++ + + + D +DQ++FL +Q Sbjct: 123 IATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQ 182 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV-----KRIN 236 L FPLG + KE V+ +A E L + K +S +CF+ + + + R Sbjct: 183 DALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPG 242 Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLD--KNSSRVIVGP 294 I++E + ++LG H G YT+GQR +G + EP +VV D K V+ GP Sbjct: 243 HFISIE------DNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVVSGP 295 >gi|281348930|gb|EFB24514.1| hypothetical protein PANDA_011920 [Ailuropoda melanoleuca] Length = 392 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 111/373 (29%), Positives = 172/373 (46%), Gaps = 50/373 (13%) Query: 44 GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVP 103 GY V GV ++ ++S G C A +D DA RVC +++ + Y + + N V Sbjct: 1 GYQVTGVFMKNWDSLD---EHGVCIADRDCEDAYRVCQILDIPFHQVSYVKEYWNDVFSD 57 Query: 104 FASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVLATGHYIRSRLYVGDDGKRRRI 162 F S Y G TP P + CN+ +KFS LGAD +ATGHY R+ L + +++ I Sbjct: 58 FLSEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADAVATGHYARTSLEDEEVFQQKHI 117 Query: 163 ------------------MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 + + D +DQ++FL +Q L FPLG + K+ V+ +A Sbjct: 118 RRPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQDALRRTLFPLGGLTKDFVKKIA 177 Query: 205 REMGL-DIADKSDSQDICFVQQGKYFDVV-----KRINAGIALEGDIVHLNGQILGRHNG 258 E L + K +S ICF+ + + + + R I++E + ++LG H G Sbjct: 178 AENRLHHVLQKKESMGICFIGKRNFENFILQYLQPRPGKFISIE------DSKVLGTHKG 231 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLR--EINWLGD-- 313 YT+GQR + + EP +VV D V V PR + ++R LR ++W+ + Sbjct: 232 WFLYTLGQRAKIS-GLQEPWYVVEKDGTKGDVFVAPRTDHPALYRDLLRTSRVHWIAEEP 290 Query: 314 --GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 L D +++ C + R VP + N DG V+V K+ +A GQ VFY Sbjct: 291 PAALVRDKMME---CHFRFRHQMALVPCVLTLNQDGTVWVTAVKAVRALAPGQFAVFYKG 347 Query: 371 DSNEARVLGGGII 383 D LG G I Sbjct: 348 DE----CLGSGKI 356 >gi|50291717|ref|XP_448291.1| hypothetical protein [Candida glabrata CBS 138] gi|49527603|emb|CAG61252.1| unnamed protein product [Candida glabrata] Length = 406 Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 115/385 (29%), Positives = 191/385 (49%), Gaps = 32/385 (8%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRVCD 81 VV+AMSGGVDSSV AAL GV +Q ++ +A + C +D D ++ D Sbjct: 29 VVIAMSGGVDSSVAAALFAHYP-KATGVYMQNWSESQALESIAEEPCYEKDWKDVAKLGD 87 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGAD- 139 + V ++E + V P Y G TP P + CN+ VKF L S + ++ G D Sbjct: 88 FLGVPVEKVNFESDYWIDVFEPMLQEYDQGRTPNPDIGCNKFVKFGKLKSYLDQKYGHDN 147 Query: 140 -VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 L TGHY SR+ + K ++ R ++DQSY+L L L P+G + K Sbjct: 148 YHLVTGHY--SRVLQHLESKEYHLL-RGYYPQKDQSYYLSQINGGILPRLVLPMGHLTKP 204 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNG----QIL 253 VRD+ARE+ L A+K DSQ ICFV ++ K + + + G+++ + + Sbjct: 205 EVRDMARELQLPTANKRDSQGICFVNNSQHKKFNKFLEHYLTNKPGNVITVEPTGEKTVW 264 Query: 254 GRHNGIINYTIGQRRGLGVAM--GEPLFV--VYLDK----NSSRVIVGPRESLEVHRIYL 305 G H G+ +YT+GQ+ G G+++ +P + Y+ + + VIV RE+ +++R L Sbjct: 265 GTHKGLWSYTLGQKIGDGISLPQADPRYTGAWYVSEKIPATNEIVIVRGRENPQLYRDKL 324 Query: 306 R--EINWLGDG-LFEDAVVDGFK---CFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVG 358 R + +LG+ A+ + + + RS +P P+ + + D ++ F++ + Sbjct: 325 RIQDFEYLGEPQTIRKAITEALQRGELRARYRSLMEPEPLISINTDADEFHLQFQRPQRA 384 Query: 359 VASGQACVFYTSDSNEARVLGGGII 383 +A GQ C + + R+LG G I Sbjct: 385 MAPGQFCCLLSQN----RILGSGPI 405 >gi|288924750|ref|ZP_06418687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella buccae D17] gi|288338537|gb|EFC76886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella buccae D17] Length = 353 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 115/370 (31%), Positives = 174/370 (47%), Gaps = 23/370 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD R+ V +SGGVDSSVV L G +++ + + C + +D+ A Sbjct: 2 KDKRIAVLLSGGVDSSVVVCELAALGLHPDCFYIKI---GPEEQEEWDCSSEEDLEMATA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V V D + + V AG TP P V CNR +KF + ++G Sbjct: 59 VAARYGCRLQVVDCHREYWDEVTRYTMEKVKAGFTPNPDVMCNRLIKFG---AFDAKMGH 115 Query: 139 D--VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 D ++ATGHY ++ G R+ ++ P D +DQ+ FL QL FP+G Sbjct: 116 DYDLIATGHYAQTEWIDG----RKWLVTSP-DPVKDQTDFLAQIYDWQLRKAIFPIGHYM 170 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255 K+ VR++A L A + DSQ ICF+ Q Y + ++R GD++ L G+ +G Sbjct: 171 KDEVREIAEREHLVNAKRRDSQGICFLGQINYNEYLRRYLG--EQPGDVIELETGKTIGE 228 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H G+ +TIGQR+GLG G P FVV K+ R ++ + Y ++ + D Sbjct: 229 HRGLWFHTIGQRKGLGFG-GGPWFVV--KKDVGRNVLYVSHGYDPQTAYKQDFR-MHDFH 284 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYTSDSNE 374 A +D + KIR + D +P V++ +G+Y + + GVA GQ CV Y D Sbjct: 285 VLTAPIDSERVTFKIRHTPDYLPATVEKTSEGIYTVHADAPIHGVAPGQFCVVY--DEQH 342 Query: 375 ARVLGGGIIS 384 R G G I+ Sbjct: 343 HRCFGSGEIT 352 >gi|303284375|ref|XP_003061478.1| predicted protein [Micromonas pusilla CCMP1545] gi|226456808|gb|EEH54108.1| predicted protein [Micromonas pusilla CCMP1545] Length = 384 Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 121/380 (31%), Positives = 180/380 (47%), Gaps = 43/380 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+V V +SGGVDSSV LL+ G+DV LQ++ C D+ +AR VC Sbjct: 1 MKVAVLLSGGVDSSVALTLLQAAGHDVTAFYLQIWFQEDFRNYWDQCPWEDDLSEARAVC 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS---DLLSVTRQLG 137 D + V V + + V+ + G TP P + CN VKF + L+ T Sbjct: 61 DLLRVPLEVVPLTRPYWDLVVSHSVEEISRGRTPNPDMLCNSRVKFGAFREWLAETHPGR 120 Query: 138 ADVLATGHYIRSRLYVGD----------DGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 +A+GHY G DGK + +M D +DQ+YFL A +Q QL Sbjct: 121 FARVASGHYAALERPGGPFGGAGDDADADGKVKLVMS--GDAHKDQTYFLAALSQAQLEG 178 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 L FP+G + K +RD+AR GL A++ DSQ ICF+ + K+ + V G IV Sbjct: 179 LSFPIGGLPKAEIRDIARRAGLPNANRKDSQGICFLGKVKFSEFVAEHLG--ERPGKIVE 236 Query: 248 L-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 + G +G H G +TIGQR GLG++ G P +V K++ R IV ++ Sbjct: 237 IETGLEIGEHRGFWFHTIGQRSGLGLS-GGPWYVC--GKDAKRNIV-----------FIT 282 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV--YVDFEKSEVGVASGQA 364 + + G D F+ + K+R + ++ + DG V + ++ G+A+GQ Sbjct: 283 KDYYAG-----DKERRAFRLYCKVRHGERRYRCTLKFDPDGEGGRVVLDANDQGLAAGQF 337 Query: 365 CVFYTSDSNEARVLGGGIIS 384 VFY D E LG G+I+ Sbjct: 338 AVFY--DGRE--CLGSGVIA 353 >gi|145356777|ref|XP_001422602.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144582845|gb|ABP00919.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 389 Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 111/369 (30%), Positives = 173/369 (46%), Gaps = 19/369 (5%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83 VV +SGGVDS+V A L+R G ++ +++R C D+ AR + + + Sbjct: 17 VVGLSGGVDSAVAAWALERCGARATATLMRNWDARDEDAAT-DCSHRDDLKSARAIAEKL 75 Query: 84 NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVLA 142 N+ D+ + + V P+ ++ +G TP P ++CNR VKF LL LG LA Sbjct: 76 NLRFIESDFTREYWHEVFEPYVEAFESGATPNPDLECNRRVKFGALLRRAMEDLGGRYLA 135 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R V D+G R++ R +D +DQSYFL + + L FPLG + K R+ Sbjct: 136 TGHYARIDRDV-DEGAPPRLL-RGIDQTKDQSYFLASVRGEALRSACFPLGAVFKSETRE 193 Query: 203 LAREMGLDIADKSDSQDICFVQQ---GKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258 AR +G D AD+ S ICF+ + G++ + G ++ + + G H G Sbjct: 194 AARILGFDCADRRSSAGICFIGRRPFGEFIGEYITPSEGAFVDAETARPVPGA--APHRG 251 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD-G 314 + +YT+GQR +G A +P FVV + ++ V V ++L R L + W+ + Sbjct: 252 LASYTVGQRAKIGGAP-KPWFVVGKNVAANVVYVAKGAEHDALYSTRAALADEFWISNRR 310 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 D + K R + + + F++ E V GQA V Y D Sbjct: 311 PTSDDGSSSVRLLAKTRYASFSSSFVPRVESSPLRATFDRPERAVTPGQALVLYDGDV-- 368 Query: 375 ARVLGGGII 383 LGGG+I Sbjct: 369 --CLGGGVI 375 >gi|68482055|ref|XP_715045.1| hypothetical protein CaO19.7245 [Candida albicans SC5314] gi|46436648|gb|EAK96007.1| hypothetical protein CaO19.7245 [Candida albicans SC5314] Length = 423 Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 117/388 (30%), Positives = 193/388 (49%), Gaps = 41/388 (10%) Query: 17 NPK-DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 PK D ++VAMS GVDSSV AAL K D +V G+ + A+ + + C +D D Sbjct: 54 TPKPDDHIIVAMSSGVDSSVCAALYK-DYPNVHGLYM-------ANWSQSATCTERDWKD 105 Query: 76 ARRVCDTINVSH-YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 +RVC + +S ++E + V +P Y G TP P + CN+ VKF L+ Sbjct: 106 VQRVCQDLGISSCERVNFEHEYWQDVFMPMIEKYEKGLTPNPDIGCNKFVKFGKLIDYLH 165 Query: 135 Q----LGAD-VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 + G D L TGHY R + + G+ + R + +DQSY+L + Q L + Sbjct: 166 KKYDGTGKDWWLVTGHYARIMKH-NETGEYH--LLRGLSQRKDQSYYLSSIPQSSLSKIL 222 Query: 190 FPLGDMKKESVRDLAR-EMGLDIADKSDSQDICFV--QQGKYFDVVKRINAGIALE-GDI 245 P+G K +R+LA + L A K DSQ +CFV QQ + + +N I GDI Sbjct: 223 LPIGHYIKPQIRELAHDQFKLHTATKPDSQGLCFVNPQQSNFREF---LNDYIPENPGDI 279 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLF--VVYL-DKNSSR---VIVGPRESLE 299 + +G++ G+H G+ + TIGQ+ + + +P + + ++ DKN + +IV ++ + Sbjct: 280 ITEDGKVWGQHKGLWHATIGQKSSVCMPQADPQYQGIWFVSDKNYEKNQIIIVKGHDNPK 339 Query: 300 VHR--IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSE 356 + + + L ++ WL ++ V+ + S +PV + + D + V+ E Sbjct: 340 LFKQTVELTQLEWLHP---KEKVLCLQSLQFQYHSLSKSIPVTRIIESQDRLTVELETPV 396 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384 +A GQA V Y + +VLGGG+I+ Sbjct: 397 RALAPGQAGVLYKGN----QVLGGGMIN 420 >gi|238878196|gb|EEQ41834.1| hypothetical protein CAWG_00021 [Candida albicans WO-1] Length = 422 Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 117/388 (30%), Positives = 193/388 (49%), Gaps = 41/388 (10%) Query: 17 NPK-DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 PK D ++VAMS GVDSSV AAL K D +V G+ + A+ + + C +D D Sbjct: 53 TPKPDDHIIVAMSSGVDSSVCAALYK-DYPNVHGLYM-------ANWSQSATCTERDWKD 104 Query: 76 ARRVCDTINVSH-YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 +RVC + +S ++E + V +P Y G TP P + CN+ VKF L+ Sbjct: 105 VQRVCQDLGISSCERVNFEHEYWQDVFMPMIEKYEKGLTPNPDIGCNKFVKFGKLIDYLH 164 Query: 135 Q----LGAD-VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 + G D L TGHY R + + G+ + R + +DQSY+L + Q L + Sbjct: 165 KKYDGTGKDWWLVTGHYARIMKH-NETGEYH--LLRGLSQRKDQSYYLSSIPQSSLSKIL 221 Query: 190 FPLGDMKKESVRDLAR-EMGLDIADKSDSQDICFV--QQGKYFDVVKRINAGIALE-GDI 245 P+G K +R+LA + L A K DSQ +CFV QQ + + +N I GDI Sbjct: 222 LPIGHYIKPQIRELAHDQFKLHTATKPDSQGLCFVNPQQSNFREF---LNDYIPENPGDI 278 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLF--VVYL-DKNSSR---VIVGPRESLE 299 + +G++ G+H G+ + TIGQ+ + + +P + + ++ DKN + +IV ++ + Sbjct: 279 ITEDGKVWGQHKGLWHATIGQKSSVCMPQADPQYQGIWFVSDKNYEKNQIIIVKGHDNPK 338 Query: 300 VHR--IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSE 356 + + + L ++ WL ++ V+ + S +PV + + D + V+ E Sbjct: 339 LFKQTVELTQLEWLHP---KEKVLCLQSLQFQYHSLSKSIPVTRIIESQDRLTVELETPV 395 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384 +A GQA V Y + +VLGGG+I+ Sbjct: 396 RALAPGQAGVLYKGN----QVLGGGMIN 419 >gi|88195430|ref|YP_500234.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|87202988|gb|ABD30798.1| tRNA methyl transferase, putative [Staphylococcus aureus subsp. aureus NCTC 8325] Length = 257 Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 95/265 (35%), Positives = 140/265 (52%), Gaps = 41/265 (15%) Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY +R++ +DG M R +D +DQ+YFL +QQQL + FP+GD+ Sbjct: 3 LGADYVATGHY--ARIHRHEDGHVE--MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDI 58 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL A K DS ICF+ + + + + A GD++ L+G+ +G+ Sbjct: 59 EKSEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGK 116 Query: 256 HNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H+G++ YTIGQR GLG+ G+P FVV ++L+ + +Y+ E + D Sbjct: 117 HSGLMYYTIGQRHGLGIGGDGDPWFVV-------------GKNLKDNVLYV-EQGFHHDA 162 Query: 315 LFEDAVV---------------DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVG 358 L+ D ++ GF+C K R Q VFV+R ND + V F + Sbjct: 163 LYSDYLIASDYSFVNPEDNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRA 222 Query: 359 VASGQACVFYTSDSNEARVLGGGII 383 + GQA VFY D LGG I Sbjct: 223 ITPGQAVVFYQGDV----CLGGATI 243 >gi|167751814|ref|ZP_02423941.1| hypothetical protein ALIPUT_00055 [Alistipes putredinis DSM 17216] gi|167660055|gb|EDS04185.1| hypothetical protein ALIPUT_00055 [Alistipes putredinis DSM 17216] Length = 448 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 79/202 (39%), Positives = 112/202 (55%), Gaps = 1/202 (0%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVV+ +SGGVDSSV A LL++ G++VIG+ + ++ + +G C D A V Sbjct: 3 RVVIGLSGGVDSSVAAYLLQQAGHEVIGLFMINWHDTTGT-LEGDCPWHDDRLFAELVAR 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ + D +++R V+ S YA G TP P V CNR +KF L +LGAD + Sbjct: 62 RLDIPFHTVDLSDQYRRRVVDYMFSEYAKGRTPNPDVLCNREIKFDVFLKEALKLGADFV 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R DG+ + D +DQSYFL +Q+QL FP+G + K VR Sbjct: 122 ATGHYCRKAEETAPDGRTIYKLLAGSDPNKDQSYFLCQLSQEQLSRALFPVGHLLKPEVR 181 Query: 202 DLAREMGLDIADKSDSQDICFV 223 +A +M L A + DSQ ICFV Sbjct: 182 RIAEQMKLATAKRKDSQGICFV 203 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 11/142 (7%) Query: 249 NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHR 302 +G+ +G+HNG YTIGQR+GLG+ E LFV+ D + + VG P R Sbjct: 311 DGKKIGQHNGAHFYTIGQRKGLGIGGRKESLFVLATDVEQNVIYVGEGDNHPGLYRRALR 370 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362 I E++W+ D L E + + V+IR Q + D Y+ F++ + G+ G Sbjct: 371 IAPGELHWI-DPLRELKTGESRRFDVRIRYRQPLQGAELFIRPDAAYLLFDEPQRGITPG 429 Query: 363 QACVFYTSDSNEARVLGGGIIS 384 Q +Y D ++G G+I+ Sbjct: 430 QFAAWYDGDE----LVGSGVIA 447 >gi|58261940|ref|XP_568380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cryptococcus neoformans var. neoformans JEC21] gi|57230553|gb|AAW46863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Cryptococcus neoformans var. neoformans JEC21] Length = 478 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 114/403 (28%), Positives = 183/403 (45%), Gaps = 43/403 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ----------------------LYNSRK 59 V V MSGGVDS+ +L+ + V ++ Y+S Sbjct: 71 HVTVGMSGGVDSATTLRILREFPIHLDVVFMRNWDPLLSESPPESSLPPSPISLAYSSGS 130 Query: 60 ASKRK---GSCCAGQDVYDARRVCDTINV---SHYVFDYEERFRNAVIVPFASSYAAGET 113 S R+ C +D D +V + + S + D + + + V P + G T Sbjct: 131 TSNREQNLSPCQWERDWNDVLKVATQVGIPKDSIKLVDLSKEYWSRVFEPAVGVWERGGT 190 Query: 114 PLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQ 173 P P VDCNR +KF LL V + LATGHY R + R +D +DQ Sbjct: 191 PNPDVDCNREIKFGALLDVLPKKDRHFLATGHYGRVAHVPLLSHPGPSKLLRAVDKSKDQ 250 Query: 174 SYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVV 232 +Y+L T+QQL PLG + K VR LA GL A K +S +CF+ ++GK+ D + Sbjct: 251 TYYLSQMTEQQLSRAILPLGSLLKTDVRRLAEHWGLPNAKKEESMGVCFIGERGKFGDFI 310 Query: 233 KRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVY--LDKNSSRV 290 + + G +V+L+G+ L H G+ YTIGQR + + +P+FV + + + + Sbjct: 311 SQYTSPPE-SGYLVNLSGERLAEHKGLWYYTIGQRARVANQL-KPMFVAKKGVGEKGTDI 368 Query: 291 IVGP---RESLEVHRIYLREINWLGDGLFEDAVV-DGFKCFVKIRSSQDPVP--VFVQRN 344 +V P L ++ + +W+ D + +V + K +++R +PV + V N Sbjct: 369 LVVPGSDHPMLLCKSVHTSDFHWIHDTFPRELLVKEPEKVGIQVRHRMNPVGGRIVVGGN 428 Query: 345 DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387 V V+F VGV+ GQ + ++ LG G+I G+K Sbjct: 429 VKDVTVEFNDPIVGVSPGQVVAIW----HDGWCLGSGVIDGTK 467 >gi|13508161|ref|NP_110110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma pneumoniae M129] gi|2496370|sp|P75365|MNMA_MYCPN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|1674103|gb|AAB96067.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma pneumoniae M129] gi|301633672|gb|ADK87226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma pneumoniae FH] Length = 370 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 113/386 (29%), Positives = 177/386 (45%), Gaps = 35/386 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS---------RKASKRKGSCCA 69 ++ V V +SGGVDS+V A LLK+ +VIG+ ++ +++ R ++ K C + Sbjct: 2 QNKTVFVGISGGVDSAVSALLLKQQYREVIGIFMECWDNTLNNDQLGHRAFNEHKSGCSS 61 Query: 70 GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 +D +A+ + + + + E + V +P ++ G TP P + CNR +KF + Sbjct: 62 KEDFREAQAIAQLLGIKLIKQNLVEPYWKQVFLPTIDAFKNGLTPNPDMLCNRLIKFGLM 121 Query: 130 LSVTRQLGADV-LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 +QL + ATGHY + ++ P D +DQ+YFL QL D+ Sbjct: 122 RDYCKQLDPNSDFATGHYAALSW-----DNNQPLLAIPKDKHKDQTYFLAHVKPAQLQDV 176 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR---INAGIALEGDI 245 FPL + K VR +A +A K DS ICF+ + + D +K + G+ + Sbjct: 177 VFPLAHLLKTEVRQIALAHHFSVATKKDSTGICFIGERHFSDFLKNYLPVKPGVIYDWK- 235 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLD-KNSSRVIVGPRESLEVHRI 303 + LG H G+ YT GQR GL + FVV D K ++ + E L+ I Sbjct: 236 ---TQRQLGSHEGVWFYTTGQRSGLNLGGQAARNFVVEKDLKTNTLYVSSDPEDLQRRGI 292 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVAS 361 L NWL V V+IR +Q V + VQ N + V V ++ V + Sbjct: 293 TLSHFNWLYQPNPLTQTV-----LVRIRHAQPLVQGHITVQPN-NVVQVQLDQPIDRVTN 346 Query: 362 GQACVFYTSDSNEARVLGGGIISGSK 387 GQ V YT + LG GII+ S+ Sbjct: 347 GQYGVLYTQN---GICLGSGIITASQ 369 >gi|145352290|ref|XP_001420484.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580718|gb|ABO98777.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 394 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 113/365 (30%), Positives = 175/365 (47%), Gaps = 19/365 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +RV V +SGGVDSSV ALL+ G++ + LQ++ C +D+ A Sbjct: 5 KPLRVAVLLSGGVDSSVALALLRAAGHECVAFYLQIWFQEDFRNTWDQCPWEEDLRVAES 64 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS---DLLSVTRQ 135 VC+ + V + + N V+ G TP P V CN VKF + L+ T Sbjct: 65 VCERVGVPLETVPLTDEYWNLVVKDSVEEIRKGRTPNPDVLCNSRVKFGAFREWLARTHP 124 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 D +A+GHY + + D G+ R++ D +DQ+YFL +Q+QL + FP+G M Sbjct: 125 GEFDRVASGHY--AAVERADVGELARLVMS-GDTFKDQTYFLADLSQEQLGSVCFPVGGM 181 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254 K +R LA L A + DSQ ICF+ + K+ + + + GDI+ + +G++LG Sbjct: 182 PKAEIRALAASAELPNAGRKDSQGICFLGKVKFSEFIAEHLG--EMPGDIIEVESGKVLG 239 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLD-KNSSRVIVGPRESLEVHR--IYLREINWL 311 +H +TIGQR GL G P +V D N+ + SL+ R + NW+ Sbjct: 240 KHRAYWFHTIGQRSGL-FLHGGPWYVAGKDCVNNIVYVTRDYYSLDKARDTFTVAGFNWI 298 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGV---YVDFEKSEVGVASGQACVF 367 ++G + VK+R ++ Q D DG V+ + + G+A GQ VF Sbjct: 299 SGQEPPLESIEGLR--VKVRHGENIYACSFQFKDVDGERCGEVNIGQDDQGLAPGQYAVF 356 Query: 368 YTSDS 372 Y D+ Sbjct: 357 YDGDT 361 >gi|315607764|ref|ZP_07882757.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella buccae ATCC 33574] gi|315250233|gb|EFU30229.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella buccae ATCC 33574] Length = 359 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 114/370 (30%), Positives = 173/370 (46%), Gaps = 23/370 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD R+ V +SGGVDSSVV L G +++ + + C + +D+ A Sbjct: 8 KDKRIAVLLSGGVDSSVVVCELAALGLHPDCFYIKI---GPEEQEEWDCSSEEDLEMATA 64 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V V D + + V AG TP P V CNR +KF + ++G Sbjct: 65 VAARYGCRLQVVDCHREYWDEVTRYTMEKVKAGFTPNPDVMCNRLIKFG---AFDAKMGH 121 Query: 139 D--VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 D ++ATGHY ++ G R+ ++ P D +DQ+ FL QL FP+G Sbjct: 122 DYDLIATGHYAQTEWIDG----RKWLVTSP-DPVKDQTDFLAQIYDWQLRKAIFPIGHYM 176 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255 K+ VR++A L A + DSQ ICF+ Q Y + ++R GD++ L G+ +G Sbjct: 177 KDEVREIAGREHLVNAKRRDSQGICFLGQINYNEYLRRYLG--EQPGDVIELETGKTIGE 234 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H G+ +TIGQR+GLG G P FVV K+ R ++ + Y ++ + D Sbjct: 235 HRGLWFHTIGQRKGLGFG-GGPWFVV--KKDVGRNVLYVSHGYDPQTAYKQDFR-MHDFH 290 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYTSDSNE 374 +D + KIR + D +P V++ +G+Y + + GVA GQ CV Y D Sbjct: 291 VLTTPIDSERVTFKIRHTPDYLPATVEKTSEGIYTVHADAPIHGVAPGQFCVVY--DEQH 348 Query: 375 ARVLGGGIIS 384 R G G I+ Sbjct: 349 HRCFGSGEIT 358 >gi|325973163|ref|YP_004250227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma suis str. Illinois] gi|323651765|gb|ADX97847.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma suis str. Illinois] Length = 369 Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 115/384 (29%), Positives = 189/384 (49%), Gaps = 37/384 (9%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA--GQDVYDAR 77 + +VV+A+SGGVDSSV A LLK++GY V G+ + ++S+ C +D A Sbjct: 6 EKKVVIALSGGVDSSVAALLLKKEGYKVFGIHMINWDSQLNELEMDKECESLSKDREYAE 65 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQL 136 + + + YV+++ + N V PF S P + CN +KF LLS V R Sbjct: 66 LIAQQLEIPFYVYNFTFEYWNYVFKPFISLLNKNLIGNPDILCNSAIKFGTLLSKVKRVF 125 Query: 137 GADV-LATGHY-----IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 G DV LATGHY I + + +G C + ++DQ+YFL TQ QL ++ F Sbjct: 126 GPDVLLATGHYAKVISIENNVLLG--------TCS--NEQKDQTYFLSKLTQFQLREIIF 175 Query: 191 PLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL- 248 PL ++ K+ VR++A+E +K S+ ICF+ + ++ + + + +G IV + Sbjct: 176 PLSEIDSKQKVREIAKENNFPNWNKRSSRGICFIGKRNFYSFISKYVD--SKKGSIVDIE 233 Query: 249 NGQILGRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGPRES----LEVHRI 303 N + LG+H G+ Y++ QR+G V+ E +V D+N+S + V + L+ + Sbjct: 234 NQKYLGQHQGLCYYSMNQRKGQLVSGQKEKYYVCGRDENNSTLFVCGESNRDKYLKKNYC 293 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASG 362 I+W+G G K +K + + + +++ N V + E S + G Sbjct: 294 VADNIHWIG-----TPPEIGRKILLKFKHTPRFISGTIKKINSKEVEISHE-SCFSTSPG 347 Query: 363 QACVFYTSDSNEARVLGGGIISGS 386 Q VFY+ D + LG GI S Sbjct: 348 QYIVFYSLD--KKICLGSGIFKTS 369 >gi|301629819|ref|XP_002944031.1| PREDICTED: tRNA-specific 2-thiouridylase mnmA-like, partial [Xenopus (Silurana) tropicalis] Length = 292 Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 104/300 (34%), Positives = 143/300 (47%), Gaps = 30/300 (10%) Query: 104 FASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIM 163 F Y AG TP P V CN +KF L LGA+ +ATGHY R R D G + Sbjct: 1 FLREYQAGRTPNPDVLCNAEIKFKAFLDHAFTLGAEKIATGHYARVRQNA-DTGLFE--L 57 Query: 164 CRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV 223 + +D +DQSYFL Q QL FP+G+++K VR +A E+GL A K DS ICF+ Sbjct: 58 LKGLDPAKDQSYFLHRLNQAQLAKTLFPVGELRKTEVRRIAEEIGLPNARKKDSTGICFI 117 Query: 224 QQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGIINYTIGQRRGLGV---------- 272 + + + R I+ E G I+ G+ LGRH G+ YT+GQR+GLG+ Sbjct: 118 GERPFRAFLNRY---ISKEPGPILDDRGRKLGRHVGLSFYTLGQRQGLGIGGVKEQGAAR 174 Query: 273 AMGE--PLFVVY--LDKNSSRVIVGP-RESLEVHRIYLREINWLGDGLFEDAVVDGFKCF 327 GE P FV LDKN RV+ G L H + ++ +W A G Sbjct: 175 GAGEHAPWFVARKELDKNVLRVVQGHDHPWLLSHHLMAQDTSWCAG----HAPAPGAYAA 230 Query: 328 VKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387 QD V D G + F +++ V GQ+ V Y + LGGG+I+ ++ Sbjct: 231 KTRYRQQDAVCQLQAVPDGGFALQFPEAQWAVTPGQSAVLYDGEV----CLGGGVIATAQ 286 >gi|329961014|ref|ZP_08299293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides fluxus YIT 12057] gi|328532300|gb|EGF59104.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides fluxus YIT 12057] Length = 355 Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 116/358 (32%), Positives = 169/358 (47%), Gaps = 20/358 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + V +SGGVDSSVV LL GY +L + C A +D+ A + Sbjct: 1 MNIAVLLSGGVDSSVVVHLLCEQGYRP---SLFYIRIGRDDTDYMDCSAEEDLEMASAIA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA-- 138 +S V D + + V G TP P V CN+ +KF RQ+G Sbjct: 58 RRYGLSLEVVDLHREYWDNVAAYAIDKIRRGLTPNPDVMCNKLIKFG---CFERQVGREF 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D ATGHY + L DGK + +D +DQ+ FL Q+ L FPLG + K+ Sbjct: 115 DFTATGHYATTVLL---DGKT--WLGTAVDPIKDQTDFLAQIDYLQVSRLMFPLGGLMKQ 169 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VRD+A GL A + DSQ ICF+ + Y D V+R EGDI+ L G+ LG+H Sbjct: 170 EVRDIALRAGLPSARRRDSQGICFLGKINYNDFVRRFLG--EREGDIIELETGKKLGKHR 227 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDG 314 G +TIGQR+GLG+ G P FVV D + + V E+ + +R+ +++ D Sbjct: 228 GYWFHTIGQRKGLGLG-GGPWFVVRKDIEGNVIYVSRGYDTELQFGNEFRMRDFHFITDN 286 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 ++ + KIR + + + + R +G + ++ G+A GQ V Y S S Sbjct: 287 PWKKEENGAVEVTFKIRHTPEFMKGRLFREPEGYRIVSDEKLQGIAPGQFGVIYDSAS 344 >gi|150951311|ref|XP_001387616.2| predicted protein [Scheffersomyces stipitis CBS 6054] gi|149388488|gb|EAZ63593.2| predicted protein [Pichia stipitis CBS 6054] Length = 356 Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 109/376 (28%), Positives = 185/376 (49%), Gaps = 43/376 (11%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MS GVDSSV A + + +V G+ + A+ + + C +D D ++VC + + Sbjct: 1 MSSGVDSSVAAGIYAKKYKNVRGIYM-------ANWSQTAKCTERDWNDVQKVCHDLKIP 53 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGAD---VLA 142 ++E+ + N V P + Y G TP P CN+ VKF ++ +T + D L Sbjct: 54 CERVNFEKEYWNDVFQPMLNMYEKGLTPNPDTGCNKYVKFGCMIDHLTAKFPRDKKWWLV 113 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R L+ + + R ++DQSY+L + Q+ L + P+G K VR+ Sbjct: 114 TGHYARVMLH---QPSGQYHLLRAYSKDKDQSYYLSSIPQEALSRVLMPIGHYVKPDVRE 170 Query: 203 LAREMGLDIADKSDSQDICFV--QQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHNGI 259 LA+E+ L ++ K DSQ +CFV +Q + D +N I G+IV +G++ G+H G+ Sbjct: 171 LAKELNLHVSSKPDSQGLCFVSQEQNSFRDF---LNDYIEPNPGNIVTEDGKVWGKHQGL 227 Query: 260 INYTIGQRRGLGVAMGEPLF--VVYL-DKN---SSRVIVGPRESLEVHRIYLREIN---- 309 + TIGQ+ + + G+P + V ++ +KN + VIV R++ ++Y +E+N Sbjct: 228 WHATIGQKSSISMPQGDPQYKGVWFVSEKNFETNELVIVRGRDNP---KLYKQEVNVDDF 284 Query: 310 -WLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVF 367 W+ + + F + RS Q P+ V + R + + +A GQ V Sbjct: 285 QWMNSDNSDSSSEITF----QYRSLQTPIKVESMARKGANYTIKLAEKVRALAPGQNVVL 340 Query: 368 YTSDSNEARVLGGGII 383 Y + +VLG G+I Sbjct: 341 YRGN----QVLGSGVI 352 >gi|195469645|ref|XP_002099747.1| GE16655 [Drosophila yakuba] gi|194187271|gb|EDX00855.1| GE16655 [Drosophila yakuba] Length = 388 Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 107/369 (28%), Positives = 174/369 (47%), Gaps = 33/369 (8%) Query: 32 DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91 DS+V A LL G++V+GV ++ ++ G C D+ DA C + V + Sbjct: 14 DSAVSAHLLAERGFNVLGVFMRNWDE---VDEMGRCSGEADLKDAEWACRQLGVELRQVN 70 Query: 92 YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS--VTRQLGADVLATGHYIRS 149 Y + AV F Y G TP P + CNR +KF DL LG D +ATGHY R+ Sbjct: 71 YVREYWTAVFSQFLDDYQLGLTPNPDILCNRHIKF-DLFHKHALENLGYDAVATGHYARN 129 Query: 150 RLY-----VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 L + + + R ++ P D +DQ++FL Q+ L FPLGD +K V++LA Sbjct: 130 SLGNFLEGIASNNEARLLI--PADTFKDQTFFLAGIPQKALQRTMFPLGDFQKSQVKELA 187 Query: 205 REMGLD-IADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHNGII 260 +++GL +A+K +S ICFV + + D ++ G L+ D +G ++G H GI Sbjct: 188 KKIGLQRLANKKESTGICFVGKRNFKDFIQEYITSKTGPFLDID----SGAVVGHHEGIH 243 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL---GDG 314 +T+GQR L + +P FV + S+ + V +L I + NWL Sbjct: 244 QWTVGQRCRLSSFL-QPYFVARKEAASNTIYVAAGHNHPALLSTHIDVDPPNWLCSKSQR 302 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDS- 372 + D C + + ++ V ++ + ++ +V+ E + GQ VFY+ + Sbjct: 303 ILAD--TGSLSCRFRFQHTKPLVGCHLRLSPENSFHVELEAPLRAITPGQYAVFYSDTAC 360 Query: 373 -NEARVLGG 380 AR+L Sbjct: 361 LGSARILSA 369 >gi|194226979|ref|XP_001488715.2| PREDICTED: similar to tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase 1 [Equus caballus] Length = 527 Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 120/403 (29%), Positives = 181/403 (44%), Gaps = 52/403 (12%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRD------GYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 P+ V A+ GG + V+A GY V GV ++ ++S G C A + Sbjct: 102 PEPGPVSRALKGGGRGAEVSARPSSPSARPSRGYQVTGVFMKNWDS---LDEHGVCTADK 158 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D DA RVC +++ + Y + + N V F + Y G TP P + CN+ +KFS Sbjct: 159 DCEDAYRVCQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFR 218 Query: 132 VTR-QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER------------------- 171 LGAD +ATGHY R+ L D+ +++ + RP L R Sbjct: 219 YALDNLGADAVATGHYARTSLE-DDEVFQQKHVKRPEGLFRNRFEVRNAVKLLQAADSFK 277 Query: 172 DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFD 230 DQ++FL +Q L FPLG + K+ V+ +A E L + K +S ICFV + + + Sbjct: 278 DQTFFLSQVSQDALRRTLFPLGGLTKDFVKKIAAENRLHHVLQKKESMGICFVGKRNFEN 337 Query: 231 VV-----KRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDK 285 + R I++E + ++LG H G YT+GQR +G + EP +VV D Sbjct: 338 FILQYLQPRPGKFISIE------DNKVLGTHKGWFLYTLGQRAKIG-GLREPWYVVEKDG 390 Query: 286 NSSRVIVGPR-ESLEVHRIYLR--EINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFV 341 V V P+ + ++R LR ++W+ + V D +C + R VP + Sbjct: 391 AKGDVFVAPQTDHPALYRDLLRTSRVHWIAEEPPATLVRDKMMECHFRFRHQMALVPCVL 450 Query: 342 QRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 N DG V+V K + GQ VFY D LG G I Sbjct: 451 TLNQDGTVWVTAVKPVRALTLGQFAVFYKGDE----CLGSGKI 489 >gi|291414311|ref|XP_002723404.1| PREDICTED: tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase-like [Oryctolagus cuniculus] Length = 490 Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 114/375 (30%), Positives = 170/375 (45%), Gaps = 52/375 (13%) Query: 43 DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIV 102 +GY V GV ++ ++ G C A +D DA RVC +++ + Y + + N V Sbjct: 100 EGYQVTGVFMKNWDQ---LDEHGVCTADRDCEDAYRVCQILDIPFHQVSYMKEYWNDVFS 156 Query: 103 PFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVLATGHYIRSRLYVGDDGKRRR 161 F + Y G TP P + CNR +KF L LGAD +ATGHY R+ L ++ +++ Sbjct: 157 DFLNEYEKGRTPNPDIVCNRHIKFGCFLRYAVDNLGADAVATGHYARTSL-EDEEVFQQK 215 Query: 162 IMCRPMDLER-------------------DQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 + RP L R DQ++FL +Q L FPLG + K V+ Sbjct: 216 YIKRPEGLFRNRFEVRNPVKLLQAADSFKDQTFFLSQVSQPALRRTIFPLGGLTKPFVKK 275 Query: 203 LAREMGL-DIADKSDSQDICFVQQGKYFDVV-----KRINAGIALEGDIVHLNGQILGRH 256 +A E L + K +S ICFV + + + R I++E + Q+LG H Sbjct: 276 IAAENRLHHVLQKKESMGICFVGKRNFEHFILQYLQPRPGKFISIE------DNQVLGTH 329 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLR--EINWLGD 313 G YT+GQR + + EP FVV D V V PR + ++R LR ++W+ + Sbjct: 330 KGWFLYTLGQRAKIS-GLREPWFVVDKDGAKGDVFVAPRTDHPALYRDLLRTNRVHWIAE 388 Query: 314 ----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 L D +++ C + R VP + N DG V+V K+ + GQ VFY Sbjct: 389 EPPAALVRDKMME---CHFRFRHQMALVPCVLTLNQDGTVWVTAVKAVRALTPGQFAVFY 445 Query: 369 TSDSNEARVLGGGII 383 D LG G I Sbjct: 446 KGDE----CLGSGKI 456 >gi|325269460|ref|ZP_08136077.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella multiformis DSM 16608] gi|324988381|gb|EGC20347.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella multiformis DSM 16608] Length = 360 Score = 135 bits (341), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 120/375 (32%), Positives = 171/375 (45%), Gaps = 31/375 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDA 76 KD R+ V +SGGVDSSVV L R +G+ + R K + C + +D+ A Sbjct: 7 KDKRIAVLLSGGVDSSVVVYELAR-----LGLHPDCFYIRIGPEEKEEWDCSSEEDMEMA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V + D + + N V AG TP P V CNR +KF Sbjct: 62 TAVAHRFGCRLQIVDCHKEYWNQVTRYTMEKVKAGFTPNPDVMCNRLIKFG-AFDEKMGH 120 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 G D++ATGHY ++ G R+ + D +DQ+ FL QL FP+G + Sbjct: 121 GYDLIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIYDWQLKKAVFPIGHYE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255 K+ VR +A + L A + DSQ ICF+ Y + V+R GDI+ L G+ +G Sbjct: 176 KDEVRRIAEQEHLINAHRKDSQGICFLGNIDYNEYVRRYLG--EQPGDIIELETGKKIGE 233 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 H G+ +TIGQR+GLG+ G P FVV D + + V E+ L + ++L Sbjct: 234 HRGLWFHTIGQRKGLGLGGG-PWFVVRKDVVQNILYVSHGYDPETAYKSDFPLHDFHYLT 292 Query: 313 DGLFEDAVVDGF--KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYT 369 +G V G K KIR + + P V++ DG + + GVA GQ CV Y Sbjct: 293 EG------VTGLPEKITFKIRHTPEYHPATVEQLPDGKSIIHSAEPIHGVAPGQFCVVY- 345 Query: 370 SDSNEARVLGGGIIS 384 D R G G I+ Sbjct: 346 -DECHHRCYGSGEIA 359 >gi|329954341|ref|ZP_08295433.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides clarus YIT 12056] gi|328527609|gb|EGF54602.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides clarus YIT 12056] Length = 365 Score = 135 bits (341), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 119/369 (32%), Positives = 173/369 (46%), Gaps = 23/369 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + V +SGGVDSSVV LL GY +L K C A +D+ A V Sbjct: 1 MNIAVLLSGGVDSSVVVHLLCEQGYRP---SLFYIKIGKDDADYMDCSAEEDLEMASAVA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +S V D + + V G TP P V CN+ +KF +Q+G D Sbjct: 58 RRYGLSLEVVDLHREYWDNVAAYAIEKVRRGFTPNPDVMCNKLIKFG---CFEQQVGKDF 114 Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 ATGHY + L G + + +D +DQ+ FL Q+ L FPLG + K Sbjct: 115 DFTATGHYATTVLRNG-----KTWLGTALDPIKDQTDFLAQIDYLQVSKLMFPLGGLMKR 169 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VRD+A + L A + DSQ ICF+ + Y D V+R EG IV L G+ILG H Sbjct: 170 EVRDIALKAKLPSARRRDSQGICFLGKINYNDFVRRFLG--EKEGRIVELETGKILGAHR 227 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDG 314 G +TIGQR+GLG++ G P FVV D + + + V E+ H +++ +++ + Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVVRKDTDENVIYVSRGYDTELQYGHEFGMQDFHFITEN 286 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 +E V + KIR + + + + R++ G + E+ G+A GQ V Y D Sbjct: 287 PWE-GVKEAIPVTFKIRHTPEFIRGKLLRDETGCLIVSEEKLQGIAPGQFGVVY--DEAA 343 Query: 375 ARVLGGGII 383 +G G I Sbjct: 344 KLCIGSGEI 352 >gi|194768511|ref|XP_001966355.1| GF22123 [Drosophila ananassae] gi|190617119|gb|EDV32643.1| GF22123 [Drosophila ananassae] Length = 388 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 108/364 (29%), Positives = 174/364 (47%), Gaps = 26/364 (7%) Query: 32 DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91 DS+V A LLK GY V+GV ++ ++ + G C D+ DA C + V + Sbjct: 14 DSAVTAHLLKERGYSVLGVFMRNWDEFDEA---GRCSGEADLKDAEWACRRLGVELRQVN 70 Query: 92 YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--SVTRQLGADVLATGHYIRS 149 Y + AV F Y G TP P + CNR +KF DL L D +ATGHY R+ Sbjct: 71 YVREYWTAVFSQFLEDYQQGLTPNPDILCNRHIKF-DLFHRHCLESLNYDAVATGHYARN 129 Query: 150 RL------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 L G + + R ++ P D +DQ++FL ++ L FPLGD+ K V+ L Sbjct: 130 SLGNFLEKATGAEEEARLLI--PADTFKDQTFFLAGIARKALQRTMFPLGDLHKAEVKQL 187 Query: 204 AREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIIN 261 A ++GL +A K +S ICFV + + D ++ + +G V ++ G ++G H GI Sbjct: 188 AAKIGLQRLASKRESTGICFVGKRNFKDFIREYIT--SRDGHFVDVDSGAVVGNHEGIHQ 245 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFED 318 +T+GQR L + +P FV + +S+ + V +L R+++ NWL Sbjct: 246 WTVGQRCRLSSFL-QPYFVARKEASSNTIYVAAGHDHPALLSTRMHIDPPNWLCGESQRR 304 Query: 319 AVVDG-FKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY--TSDSNE 374 +G +C + + ++ V V+ + + V+ + + GQ VFY T+ Sbjct: 305 CFSEGVLRCRFRFQHTKPLVDCCVRLSPANQFQVELDAPLRAITPGQYAVFYDETACLGS 364 Query: 375 ARVL 378 AR+L Sbjct: 365 ARIL 368 >gi|239906368|ref|YP_002953109.1| putative tRNA uridine-sulfurtransferase [Desulfovibrio magneticus RS-1] gi|239796234|dbj|BAH75223.1| putative tRNA uridine-sulfurtransferase [Desulfovibrio magneticus RS-1] Length = 356 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 116/364 (31%), Positives = 162/364 (44%), Gaps = 22/364 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR+ VA+SGG DS + LL+ G+DV + + A + DA+ C Sbjct: 1 MRIAVAVSGGSDSLLALGLLRAAGHDVTALHAHFLPPGDKA------LALAEAIDAQ--C 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + V D + FR VI PFA++YAAG TP PC CNR +KF LL GA+ Sbjct: 53 RALGVPFAAVDLSQEFRARVIAPFAAAYAAGRTPNPCAACNRDMKFGLLLDAALARGAEA 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGH+ R + + R D RDQSYFL + L FPL +K Sbjct: 113 IATGHFARVQ-----QTPTGPALFRGADDSRDQSYFLSLVPGKSLARAVFPLAGRRKAEH 167 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 E+ L S+S++ICFV Y ++ ++ G IV + LG H G+ Sbjct: 168 PAALAELLLTPPLPSESREICFVPGDDYRAFLQGEGFPLSGPGPIVLADSTRLGTHQGLW 227 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +TIGQR+GLG+A EPL+V+ D ++ +IVG + L N L Sbjct: 228 RHTIGQRKGLGIAYSEPLYVIDKDPAANALIVGVKAELAATLCRTGPANCLVQPEHWPEA 287 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 V C+ P P + + G+ + F GQ V Y +D RVL Sbjct: 288 VLAQTCY-----RMKPRPATARLTAEGGLDITFADPVARPTPGQVAVLYDADG---RVLA 339 Query: 380 GGII 383 GG I Sbjct: 340 GGEI 343 >gi|300726991|ref|ZP_07060411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella bryantii B14] gi|299775714|gb|EFI72304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella bryantii B14] Length = 361 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 111/373 (29%), Positives = 175/373 (46%), Gaps = 27/373 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD ++ V +SGGVDSSVV G +++ + + C + +D+ A Sbjct: 8 KDKKIAVLLSGGVDSSVVVYEFASHGLHPDCFYIKI---GPEEQEEWDCSSEEDLEMATA 64 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V V D + + N V +G TP P V CNR +KF + ++G Sbjct: 65 VAARFGCKLQVIDCHKEYWNQVTKYTMDKVKSGFTPNPDVMCNRLIKFG---AFDEKMGH 121 Query: 139 D--VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 D ++ATGHY ++ + G ++ ++ P D +DQ+ FL Q QL FP+G Sbjct: 122 DYDLIATGHYAQTEIIDG----KKWLVTSP-DPVKDQTDFLAQIYQWQLKKAIFPIGHHI 176 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255 K+ +R++A L A + DSQ ICF+ Y + V+R +G+++ G+ +G Sbjct: 177 KDEIREIAEREHLINAKRKDSQGICFLGNIDYNEYVRRYLG--EKKGNVIEFETGKKIGE 234 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 H G+ +TIGQR+GLG+ G P FVV D + + V E+ + + ++L Sbjct: 235 HKGLWFHTIGQRKGLGLGGG-PWFVVKKDIEKNILYVSHGYDPETAYKQDFKIHDFDFLT 293 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYTSD 371 +G+ E F KIR + + P V+ N DG + ++ GVA GQ CV Y D Sbjct: 294 EGITELPARVTF----KIRHTPEYHPASVEVNGDGTFTIHSDEKIHGVAPGQFCVIY--D 347 Query: 372 SNEARVLGGGIIS 384 R G G I+ Sbjct: 348 EQHHRCYGSGEIT 360 >gi|313157065|gb|EFR56495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alistipes sp. HGB5] Length = 438 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/201 (40%), Positives = 109/201 (54%), Gaps = 1/201 (0%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VV+ +SGGVDSSV A LLKR G+DV G+ + ++ + +G C D A V Sbjct: 4 VVIGLSGGVDSSVAAYLLKRQGHDVTGLFMINWHDTTGTL-EGDCPWHDDRVFAELVAKR 62 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 +++ V D +R V+ + Y G TP P V CNR +KF L +LGAD +A Sbjct: 63 LDIPLRVVDLSADYRTRVVDYMFAEYEKGRTPNPDVLCNREIKFDVFLREALKLGADFVA 122 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R V DG+ + D +DQSYFL +Q+QL FP+GD+ K VR Sbjct: 123 TGHYCRKAEEVLPDGRTVFKLLAGADPNKDQSYFLCQLSQEQLRYALFPIGDLLKPEVRR 182 Query: 203 LAREMGLDIADKSDSQDICFV 223 +A + GL A + DSQ ICFV Sbjct: 183 IAAKQGLATAKRKDSQGICFV 203 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 13/143 (9%) Query: 249 NGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG-----PRESLEVHR 302 +G+ +G HNG YTIGQR+GLG+ E LF++ D + + VG P Sbjct: 301 DGKKIGEHNGAHFYTIGQRKGLGIGGRRESLFILATDTAQNVIYVGEGDAHPGLWRPALH 360 Query: 303 IYLREINWLGDG-LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVAS 361 I EI+W+ F ++ R +F++ D G Y+ F++ + G+ Sbjct: 361 IAPGEIHWVNPARALSPGQSARFSVRIRYRQPLQDATLFMR--DRGAYILFDQPQRGITP 418 Query: 362 GQACVFYTSDSNEARVLGGGIIS 384 GQ +Y D ++G G+IS Sbjct: 419 GQFAAWYDGDE----LVGSGVIS 437 >gi|325189345|emb|CCA23865.1| tRNAspecific 2thiouridylase mnmA putative [Albugo laibachii Nc14] gi|325189563|emb|CCA24050.1| tRNAspecific 2thiouridylase mnmA putative [Albugo laibachii Nc14] Length = 439 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/256 (32%), Positives = 132/256 (51%), Gaps = 9/256 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG-QDVYDAR 77 K++ VV+ MSGGVDSSV A LLK+ G+ V GV ++ ++S + + CC QD+ D + Sbjct: 26 KNLHVVIGMSGGVDSSVAALLLKQQGHKVTGVYMKNWDS--SDEVGAQCCPQDQDLKDVQ 83 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 VC +++ + ++ + N V P + AG TP P + CNR +KF + + L Sbjct: 84 SVCKQLDIPIHTTNFVSSYWNTVFAPCLEGFEAGLTPNPDILCNREIKFKEFIRFADTLH 143 Query: 138 ADVLATGHY--IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 ADV+ATGHY ++ G + ++ +D +DQ+YFL + FPLG Sbjct: 144 ADVVATGHYALLKKAKSNGQSNEYHQLYAG-LDPLKDQTYFLSQVPGSSFSKVLFPLGSY 202 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR-INAGIALEGDIVHLNGQILG 254 +K VR++A+ L A K DS +CF+ + ++ + + I D+ L L Sbjct: 203 RKAEVREIAKSHHLHTALKRDSVGLCFIGKRQFGPFINQYITPKYGFYYDVDRL--VRLK 260 Query: 255 RHNGIINYTIGQRRGL 270 H G + T+GQR L Sbjct: 261 AHKGFASCTVGQRASL 276 >gi|304383810|ref|ZP_07366268.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella marshii DSM 16973] gi|304335066|gb|EFM01338.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella marshii DSM 16973] Length = 382 Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 115/369 (31%), Positives = 170/369 (46%), Gaps = 19/369 (5%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + ++ V +SGGVDSSVV L R G +++ + C + +D+ A V Sbjct: 26 NRKIAVLLSGGVDSSVVLHELSRAGLQPDCFYIKI---GPEEHEEWDCSSEEDLEMAGAV 82 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 V D + + N V AG TP P V CNR +KF + + Sbjct: 83 AARYGCRLEVVDCHQEYWNQVTKYTLEKVKAGFTPNPDVMCNRLIKFG-AFDEKKGHEYE 141 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ATGHY ++ + G + ++ P D +DQ+ FL QL FP+G +KE Sbjct: 142 LIATGHYAQTEIIDG----HKWLVTSP-DPVKDQTDFLAQLYDWQLRKALFPIGHYRKEE 196 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258 VR +A L A + DSQ ICF+ + Y D ++R EG++V L G+ +G+H G Sbjct: 197 VRQIAEREHLINAKRKDSQGICFLGKINYNDYIRRYLG--ENEGEVVELETGKCIGKHKG 254 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 + +TIGQR GLG G P + V K+ R I+ + E Y R+ + D F Sbjct: 255 LWFHTIGQRHGLGFGGG-PWYAV--RKDVKRNILYVSKGFEPATAYRRDFE-IADFHFLT 310 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARV 377 V+ KIR + + +++ +G Y V EK GVA GQ CV Y D R Sbjct: 311 LPVEMEDVCFKIRHTPEYHKAKLEKRGNGAYTVHAEKPVQGVAPGQFCVVY--DEQHHRC 368 Query: 378 LGGGIISGS 386 G G I+ S Sbjct: 369 FGSGEIAWS 377 >gi|311254917|ref|XP_003126013.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like [Sus scrofa] Length = 415 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 113/371 (30%), Positives = 171/371 (46%), Gaps = 46/371 (12%) Query: 44 GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVP 103 GY V GV ++ ++ +G C A +D DA RVC +++ Y + + + V Sbjct: 22 GYQVTGVFMKNWD---LLDERGVCAADKDCEDAYRVCQILDLXFRQVSYVKEYWHDVFSD 78 Query: 104 FASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVLATGHYIRSRLYVGDDGKRRRI 162 F + Y G TP P + CN+ +KFS + LGAD +ATGHY R+ ++ R++ Sbjct: 79 FLNEYEKGRTPNPDIICNKHIKFSCFFNYAVDNLGADAVATGHYARTS-QEDEEVFRQKH 137 Query: 163 MCRPMDLER-------------------DQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 + RP L R DQ++FL +Q L FPLG + K V+ + Sbjct: 138 IRRPEGLFRNRFEVRSAVKLLQAADSFKDQTFFLSQVSQDALRRTLFPLGGLTKAFVKKI 197 Query: 204 AREMGL-DIADKSDSQDICFVQQGKYFDVV-----KRINAGIALEGDIVHLNGQILGRHN 257 A E L + K +S ICFV + + D + R I++E + ++LG H Sbjct: 198 AAENRLHHVLQKKESMGICFVGKRNFEDFILQYLQPRPGKFISIE------DNKVLGTHK 251 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLR--EINWLGDG 314 G YT+GQR +G + EP +VV D S V+V PR + ++R LR ++W+ + Sbjct: 252 GWFLYTLGQRAKIG-GLREPWYVVEKDSASGDVLVAPRTDHPALYRDLLRTGRVHWIAEE 310 Query: 315 LFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 V D C + R VP + N DG V+V ++ +A GQ VFY D Sbjct: 311 PPAALVRDKMMACHFRFRHQMALVPCVLTLNQDGTVWVTAVEAVRALALGQFAVFYKGDE 370 Query: 373 NEARVLGGGII 383 LG G I Sbjct: 371 ----CLGSGKI 377 >gi|134118155|ref|XP_772245.1| hypothetical protein CNBM0130 [Cryptococcus neoformans var. neoformans B-3501A] gi|50254856|gb|EAL17598.1| hypothetical protein CNBM0130 [Cryptococcus neoformans var. neoformans B-3501A] Length = 424 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 113/405 (27%), Positives = 183/405 (45%), Gaps = 47/405 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ----------------------LYNSRK 59 V V MSGGVDS+ +L+ + V ++ Y S Sbjct: 11 HVTVGMSGGVDSATTLRILREFPIHLDVVFMRNWDPLLSESPPESSLSPSPISLAYPSGS 70 Query: 60 ASKRK---GSCCAGQDVYDARRVCDTINV---SHYVFDYEERFRNAVIVPFASSYAAGET 113 S R+ C +D D +V + + S + D + + + V P + G T Sbjct: 71 TSNREQNLSPCQWERDWNDVLKVATQVGIPKDSIKLVDLSKEYWSRVFEPAVGVWERGGT 130 Query: 114 PLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIR--SRLYVGDDGKRRRIMCRPMDLER 171 P P VDCNR +KF LL + LATGHY R + G R + R +D + Sbjct: 131 PNPDVDCNREIKFGALLDALPKKDRHFLATGHYGRVAHAPLLSHPGPSR--LLRAVDQSK 188 Query: 172 DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV-QQGKYFD 230 DQ+Y+L T+QQL PLG + K VR LA GL A K +S +CF+ ++GK+ D Sbjct: 189 DQTYYLSQMTEQQLSRAILPLGSLLKTDVRRLAEHWGLPNAKKEESMGVCFIGERGKFGD 248 Query: 231 VVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVY--LDKNSS 288 + + + G +V+L+G+ L H G+ YTIGQR + + +P+FV + + + Sbjct: 249 FISQYTS-PPESGYLVNLSGERLAEHKGLWYYTIGQRARVANQL-KPMFVAKKGVGEKGT 306 Query: 289 RVIVGP---RESLEVHRIYLREINWLGDGLFEDAVV-DGFKCFVKIRSSQDPVP--VFVQ 342 ++V P L ++ + +W+ + +V + K +++R +PV + + Sbjct: 307 DILVVPGSDHPMLLCKSVHTSDFHWIHRTFPRELLVKEPEKVGIQVRHRMNPVGGRIVIG 366 Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387 N V V+F VGV+ GQ + ++ LG G+I G+K Sbjct: 367 GNVKDVTVEFNDPIVGVSPGQVVAIW----HDGWCLGSGVIDGTK 407 >gi|303236987|ref|ZP_07323562.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella disiens FB035-09AN] gi|302482852|gb|EFL45872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella disiens FB035-09AN] Length = 376 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 116/388 (29%), Positives = 178/388 (45%), Gaps = 41/388 (10%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDA 76 KD R+ V +SGGVDSSVV R +G+T + R K + C + +DV A Sbjct: 7 KDKRIAVLLSGGVDSSVVVYEFAR-----LGLTPDCFYIRIGPEEKEEWDCNSEEDVEMA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V + V D + + + V AG TP P V CNR +KF + + Sbjct: 62 TAVARRFGCTLKVIDCHKEYWSQVTKYTMDKVRAGFTPNPDVMCNRMIKFG---AFHEKC 118 Query: 137 GAD--VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 G D ++ATGHY +++ G ++ +C D +DQ+ FL QL FP+G Sbjct: 119 GKDYDLIATGHYAQTKWIEG-----KKWLCTSPDPVKDQTDFLAQIYDWQLKKAIFPIGH 173 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQIL 253 +K VR++A L A + DSQ ICF+ Y + V+R GD++ L G+ + Sbjct: 174 YEKNEVREIAEREHLINAKRKDSQGICFLGNIDYNEYVRRYLGEQV--GDVIELETGKKI 231 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG----PRESLEVHRIYLREIN 309 G+H G+ +TIGQR+GLG G P FVV D ++ ++V P+ + + + +++ Sbjct: 232 GQHKGLWFHTIGQRKGLGFGGG-PWFVVKKDVANNVLLVSHGYDPQTAYK-QEFKVHDLH 289 Query: 310 WLGDGLFEDAVVDGFKC--FVKIRSSQDPVPVFVQ-----------RNDDGVYVDFEKSE 356 WL + + V + K ++ IR P F + + V E+ Sbjct: 290 WLTESPKNEVVENSEKPNNWIPIRFKIRHTPEFHKGYLEMISVEEGGKETEAMVHSEEKI 349 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384 GVA GQ CV Y + N R G I+ Sbjct: 350 HGVAPGQFCVIYDKEHN--RCFGSAEIT 375 >gi|270293669|ref|ZP_06199871.1| tRNA methyl transferase [Bacteroides sp. D20] gi|270275136|gb|EFA20996.1| tRNA methyl transferase [Bacteroides sp. D20] Length = 366 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 119/358 (33%), Positives = 173/358 (48%), Gaps = 21/358 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + V +SGGVDSSVV LL GY +L + C A +D+ A + Sbjct: 13 MNIAVLLSGGVDSSVVVHLLCEQGYRP---SLFYIKIGRDDADYMDCSAEEDMEMASAIA 69 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD- 139 +S V D + + V G TP P V CN+ +KF +++G D Sbjct: 70 RRYGLSLEVVDLHREYWDQVAAYAIDKIRRGLTPNPDVMCNKLIKFG---CFEQRVGKDF 126 Query: 140 -VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 V ATGHY + L DGK + D +DQ+ FL Q+ L FPLG + K Sbjct: 127 DVTATGHYATTVL---RDGKT--WLGTAADSVKDQTDFLAQIDYLQVSKLMFPLGRLMKN 181 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VRD+A GL A + DSQ ICF+ + Y D V+R EGDIV L G+ LG+H Sbjct: 182 EVRDIALRAGLPSARRRDSQGICFLGKIDYNDFVRRFLG--EREGDIVELETGRKLGKHR 239 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV--GPRESLEV-HRIYLREINWLGDG 314 G +TIGQR+GLG+ G P FVV D + + V G +L+ + + + +++ D Sbjct: 240 GYWFHTIGQRKGLGLG-GGPWFVVRKDVEENVIYVSRGCDTALQYGYEFRMYDFHFITDN 298 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 ++ A + F KIR + + V +Q+ +G + E+ G+A GQ V Y +D+ Sbjct: 299 PWKGAQEEVEVTF-KIRHTPEFVKGRLQKEAEGYRIVSEEKLQGIAPGQFGVVYDADA 355 >gi|219126278|ref|XP_002183388.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405144|gb|EEC45088.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 368 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 112/377 (29%), Positives = 171/377 (45%), Gaps = 25/377 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V + +SGGVDSSV LL + GYDV L+++ + + G C D + VC+ Sbjct: 1 VALLLSGGVDSSVALNLLVQQGYDVTAFYLKIWLEDELA-HLGHCPWEDDYRVCQEVCEQ 59 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + +++ VI G TP P + CN VKF Q D +A Sbjct: 60 AGIPLETVSLQNAYKSRVIAYTVHEAEQGRTPNPDIMCNSRVKFGCFYEAIDQREFDFVA 119 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 +GHY + V D + R D +DQSYFL TQ QL + FP+G ++K VRD Sbjct: 120 SGHYAQ---LVKDTETGSMRLLRAPDPIKDQSYFLCTLTQDQLQRVLFPIGHLQKSQVRD 176 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGIIN 261 LA E L + DSQ +CF+ + K FD + G G IV G ++G+H+G+ Sbjct: 177 LADEFILPNRLRPDSQGLCFLGKVK-FDEFLAVYLGTR-PGPIVDAGTGDVVGQHHGVWY 234 Query: 262 YTIGQRRGLGVAMGE------PLFVVYLDKNSSRVIVGPRESLEV-----HRIYLREINW 310 +T+GQR+G+G + P +VV D V + ++ + I+W Sbjct: 235 HTVGQRKGIGRVLDPLATSRGPWYVVAKDPGKDVVYCSNQYDEDIFTASRSEFAVENIHW 294 Query: 311 LGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDGVY--VDFEKSEVGVASGQACVF 367 + + + DG + +KIR D V ++ + V + + G+A GQ VF Sbjct: 295 IAGQAPPNLLKGDGGRFVMKIRHGPDLVKGTLRLTNTAGEGDVKLDSKDGGLAPGQYVVF 354 Query: 368 YTSDSNEARVLGGGIIS 384 Y + LG G+IS Sbjct: 355 Y----KDEECLGAGVIS 367 >gi|71003538|ref|XP_756435.1| hypothetical protein UM00288.1 [Ustilago maydis 521] gi|46096040|gb|EAK81273.1| hypothetical protein UM00288.1 [Ustilago maydis 521] Length = 484 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 110/381 (28%), Positives = 176/381 (46%), Gaps = 33/381 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGS-----CCAGQ 71 K RVVVA+SGGVDSSV AALL + +D+ V ++ +N S R GS C + Sbjct: 83 KGERVVVALSGGVDSSVTAALLAQADFDLEAVFMRNWNELDESGRMQPGSGGASGCTWQR 142 Query: 72 DVYDARRVCDTI-NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 D D + VC + N+ + D + + V P + G TP P V CN+ +KF L+ Sbjct: 143 DWQDVQSVCRHLGNIPVKMIDLSKEYWTQVFEPALQDWQQGTTPNPDVSCNKEIKFGALM 202 Query: 131 SVTRQLG-----ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 + G LATGHY D + R ++ R D +DQ+Y+L + + +L Sbjct: 203 DRLIRTGDHGGSKSWLATGHYAHVAWQQQGD-RTRPMLMRAKDRSKDQTYYLSSVGEDKL 261 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKR-------INA 237 FPL + K VR+LA++ L A++ +S ICF+ +G V +N Sbjct: 262 AHAHFPLAHLLKTQVRELAKKFQLPTAERRESMGICFIGTRGSNGGAVSNTQGFSTFLNG 321 Query: 238 GI-ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV---G 293 I + GD+V +G+++ +H G+ T+GQ + A + +V D +++++V Sbjct: 322 YIPSAPGDMVDESGRVVSKHCGLHTLTVGQGARIRGATSK-YYVAKKDIPNNKIVVVQGK 380 Query: 294 PRESLEVHRIYLREINWLGDGLFEDAVVDG---FKCFVKIRSSQDPVPVFVQR---NDDG 347 L R+Y+R+I W+ + DG ++R Q V R +G Sbjct: 381 DHPMLLCTRLYVRDIEWIWREPPPELKYDGVGRVTLLAQVRHRQVESECVVSRFKQGKNG 440 Query: 348 VYVDFEKSEVGVASGQACVFY 368 V F + + VA GQ + Sbjct: 441 YVVQFTEPVLAVAPGQVLGLW 461 >gi|325989606|ref|YP_004249305.1| Trifunctional protein ribF/mnmA [Mycoplasma suis KI3806] gi|323574691|emb|CBZ40347.1| Trifunctional protein ribF/mnmA [Mycoplasma suis] Length = 369 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 110/379 (29%), Positives = 188/379 (49%), Gaps = 27/379 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA--GQDVYDAR 77 + +VV+A+SGGVDSSV A LLK++GY V G+ + ++S+ C +D A Sbjct: 6 EKKVVIALSGGVDSSVAALLLKKEGYKVFGIHMINWDSQLNELEMDKECESLSKDREYAE 65 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQL 136 + + + +V+++ + N V PF S P + CN +KF LLS V R Sbjct: 66 IIAQQLEIPFFVYNFTFEYWNYVFKPFISLLNKNLIGNPDILCNSAIKFGTLLSKVKRVF 125 Query: 137 GADV-LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 G DV LATGHY + + + C + ++DQ+YFL TQ QL ++ FPL ++ Sbjct: 126 GPDVLLATGHYAK---VISTENNVLLGTCS--NEQKDQTYFLSKLTQFQLREIIFPLSEI 180 Query: 196 -KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQIL 253 K+ VR++A+E +K S+ ICF+ + ++ + + + +G IV + N + L Sbjct: 181 DSKQKVREIAKENNFPNWNKRSSRGICFIGKRNFYSFISKYVD--SKKGSIVDIENQKYL 238 Query: 254 GRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGPRES----LEVHRIYLREI 308 G+H G+ Y++ QR+G V+ E +V D+N+S + V + L+ + I Sbjct: 239 GQHQGLCYYSMNQRKGQLVSGQKEKYYVCGRDENNSTLFVCGESNRDKYLKKNYCVADNI 298 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVF 367 +W+G G + +K + + + +++ N + V + E S + GQ VF Sbjct: 299 HWIG-----TPPEIGREILLKFKHTPRFISGTIKKINGEEVEISHE-SCFSTSPGQYIVF 352 Query: 368 YTSDSNEARVLGGGIISGS 386 Y+ D + LG G+ S Sbjct: 353 YSLD--KKICLGSGVFKTS 369 >gi|160888906|ref|ZP_02069909.1| hypothetical protein BACUNI_01326 [Bacteroides uniformis ATCC 8492] gi|317479366|ref|ZP_07938500.1| tRNA methyl transferase [Bacteroides sp. 4_1_36] gi|156861805|gb|EDO55236.1| hypothetical protein BACUNI_01326 [Bacteroides uniformis ATCC 8492] gi|316904440|gb|EFV26260.1| tRNA methyl transferase [Bacteroides sp. 4_1_36] Length = 354 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 118/358 (32%), Positives = 173/358 (48%), Gaps = 21/358 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + V +SGGVDSSVV LL GY +L + C A +D+ A + Sbjct: 1 MNIAVLLSGGVDSSVVVHLLCEQGYRP---SLFYIKIGRDDADYMDCSAEEDMEMASAIA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD- 139 +S V D + + V G TP P V CN+ +KF +++G D Sbjct: 58 RRYGLSLEVVDLHREYWDQVAAYAIDKIRRGLTPNPDVMCNKLIKFG---CFEQRVGKDF 114 Query: 140 -VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 V ATGHY + L DGK + D +DQ+ FL Q+ L FPLG + K Sbjct: 115 DVTATGHYATTVL---RDGKT--WLGTAADSVKDQTDFLAQIDYLQVSKLMFPLGRLMKN 169 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VRD+A GL A + DSQ ICF+ + Y D V+R EGDIV L G+ LG+H Sbjct: 170 EVRDIALRAGLPSARRRDSQGICFLGKIDYNDFVRRFLG--EREGDIVELETGRKLGKHR 227 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV--GPRESLEV-HRIYLREINWLGDG 314 G +TIGQR+GLG+ G P FVV D + + V G +L+ + + + +++ D Sbjct: 228 GYWFHTIGQRKGLGLG-GGPWFVVRKDVEENVIYVSRGCDTALQYGYEFRMYDFHFITDN 286 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 ++ A + + KIR + + V +Q+ +G + E+ G+A GQ V Y +D+ Sbjct: 287 PWKGAQEE-VEVTFKIRHTPEFVKGRLQKEAEGYRIVSEEKLQGIAPGQFGVVYDADA 343 >gi|84995316|ref|XP_952380.1| trna methyl transferase [Theileria annulata strain Ankara] gi|65302541|emb|CAI74648.1| trna methyl transferase, putative [Theileria annulata] Length = 1070 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 103/355 (29%), Positives = 166/355 (46%), Gaps = 50/355 (14%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV V +SGGVDSS+ ++K G+DV L++ S G C+ D+ A VC+ Sbjct: 298 RVAVLVSGGVDSSLALWIMKSRGFDVQAFHLKV---NDLSNGPG-LCSSNDISYAMEVCN 353 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + V+ +V + + + ++ Y GE P P + CN +KF + L + G D + Sbjct: 354 ILRVTLHVLPFSQVYDKHILSDVLDDYRKGEVPNPDILCNSRIKFGEFLKMATDWGFDYV 413 Query: 142 ATGHY------------IRSRLYVGDDG-------KRRRIMCRPMDLERDQSYFLFATTQ 182 ATGHY I+S Y+ DG R + +C D +DQ+YFL Q Sbjct: 414 ATGHYATLCDDFFTKEQIKSPSYL--DGCTSINGYYRIKRLCLSTDTVKDQTYFLSRLNQ 471 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 Q+ L FP+G++ K VRD A+ +GL +K DS +CF++ D+ + + + Sbjct: 472 NQMSRLIFPIGNILKTQVRDFAKTVGLPTYNKKDSFGLCFLED---LDLSEYLTKTLGES 528 Query: 243 -GDIV-HLNGQILGRHNGIINYTIGQRRGLGVAMGE------PLFVVYLD--KNSSRVIV 292 G IV + +++G HNG+ N+TIGQ++ + + P +VV D KN+ V Sbjct: 529 RGPIVEYETNKVIGEHNGLYNFTIGQKKTINNYLNPKHVGNTPKYVVKKDIYKNTLYVSA 588 Query: 293 -----------GPRESLEVHRIYLREINWLG-DGLFEDAVVDGFKCFVKIRSSQD 335 G R S +V + ++ + V D FK VK+R + + Sbjct: 589 SYNEDFFTNPRGIRSSFKVRDFFWNTPDYKDLINKVQSEVSDNFKFKVKLRHTPN 643 >gi|319902815|ref|YP_004162543.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides helcogenes P 36-108] gi|319417846|gb|ADV44957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides helcogenes P 36-108] Length = 354 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 114/354 (32%), Positives = 168/354 (47%), Gaps = 21/354 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + V +SGGVDSSVV LL GY +L K C A +D+ A + Sbjct: 1 MNIAVLLSGGVDSSVVVHLLCEQGYRP---SLFYIKIGKDDADYMDCAAEEDLEIASAIA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + V D + + V + G TP P V CN+ +KF R+ G D Sbjct: 58 RRYGLPLEVVDLHREYWDNVAAYAIDKISRGLTPNPDVMCNKLIKFG---CFERRAGKDF 114 Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 ATGHY + L G + + +D +DQ+ FL Q+ L FPLG + K Sbjct: 115 DFTATGHYATTVLQTG-----KIWLGTAVDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKH 169 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VRD+A L A + DSQ ICF+ + Y D V+R EGDIV L G+ +G+H Sbjct: 170 EVRDIALRAKLPSARRRDSQGICFLGKINYNDFVRRFLG--EREGDIVELETGKKIGKHR 227 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDG 314 G +TIGQR+GLG++ G P FVV D + + V V + E + +R+ +++ D Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVVRKDVDGNVVYVSRGYNTEQQFGNEFCIRDFHFITDN 286 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 + D V + K KIR + + + + R + G ++ ++ G+A GQ V Y Sbjct: 287 PWGD-VENDIKVTFKIRHTPEFIKGRLLREEGGYHIVSDEKLQGIAPGQFGVVY 339 >gi|325854955|ref|ZP_08171671.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella denticola CRIS 18C-A] gi|325483933|gb|EGC86873.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella denticola CRIS 18C-A] Length = 360 Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 120/372 (32%), Positives = 173/372 (46%), Gaps = 31/372 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRV 79 R+ V +SGGVDSSVV R +G+ + R K + C + +D+ A V Sbjct: 10 RIAVLLSGGVDSSVVVYEFAR-----LGLHPDCFYIRIGPEEKEEWDCNSEEDMEMATAV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 V D + + N V AG TP P V CNR +KF + ++G D Sbjct: 65 ARRFGCRLQVVDCHKEYWNQVTRYTMEKVKAGFTPNPDVMCNRLIKFG---AFDEKMGHD 121 Query: 140 --VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 ++ATGHY ++ G R+ + D +DQ+ FL QL FP+G +K Sbjct: 122 YDLIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIYDWQLKKALFPIGHYEK 176 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRH 256 + VR +A L A + DSQ ICF+ Y + V+R GDI+ L G+ +G H Sbjct: 177 DEVRRIAEREHLINAHRKDSQGICFLGNIDYNEYVRRYLG--EQTGDIIELETGKKIGEH 234 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVY--LDKNSSRVIVG-PRESLEVHRIYLREINWLGD 313 G+ +TIGQR+GLG+ G P FVV +DKN V G E+ L + ++L + Sbjct: 235 RGLWFHTIGQRKGLGLGGG-PWFVVRKDVDKNILYVSHGYDPETAYKSNFPLHDFHFLTE 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYTSDS 372 G+ E K KIR + + P V++ DG + + GVA GQ CV Y D Sbjct: 294 GITELPE----KITFKIRHTPEYHPARVEQLPDGKCIIHSAGRIHGVAPGQFCVVY--DE 347 Query: 373 NEARVLGGGIIS 384 + R G G I+ Sbjct: 348 HHHRCYGSGEIT 359 >gi|224093431|ref|XP_002187736.1| PREDICTED: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1 [Taeniopygia guttata] Length = 556 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 109/383 (28%), Positives = 171/383 (44%), Gaps = 44/383 (11%) Query: 35 VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEE 94 VV +GY V GV ++ ++ +G+C +D DA RVC +++ + Y + Sbjct: 152 VVTPSSNSEGYQVTGVFMKNWDPLD---EQGACSIDRDCEDAYRVCQKLDIPFHQVSYVK 208 Query: 95 RFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVLATGHYIRSRL-- 151 + N V Y G TP P + CN+ +KF+ L LGAD +ATGHY R+ L Sbjct: 209 EYWNEVFSDLLKEYELGRTPNPDILCNKHIKFNYFLHYAVDNLGADAIATGHYARTSLED 268 Query: 152 ---YVGDDGKRRRIMCR-------------PMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 + KR + + R DL +DQ++FL +Q L FPLGD+ Sbjct: 269 EEVFHQKHTKRPQRLLRIRFEVRNTVKLLQGADLFKDQTFFLSQISQDALRKTIFPLGDL 328 Query: 196 KKESVRDLAREMGLDIADKS---------DSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 K V+ +A E L K S +CF+ + + + + + G+ V Sbjct: 329 TKSFVKKIAAEHDLHHVLKKKEACSMFLFQSMGVCFIGERNFENFL--LEYLEPQPGNFV 386 Query: 247 HL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP-RESLEVHRIY 304 + + +++GRH G +TIGQR L + + FVV D ++ V V P R+ ++R Sbjct: 387 SIEDKKVMGRHKGWFLFTIGQRARLA-GLKDAWFVVDKDVSTGNVFVAPTRDHPALYRDL 445 Query: 305 LR--EINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360 LR ++W+ + + V + +C + R VP + N DG V+V K + Sbjct: 446 LRTNRVHWIAEEPPAELVREKMMECHFRFRHQMALVPCVLTLNQDGSVWVTLVKPARAIT 505 Query: 361 SGQACVFYTSDSNEARVLGGGII 383 GQ VFY D LG G I Sbjct: 506 PGQFAVFYKGDE----CLGSGKI 524 >gi|298526491|ref|ZP_07013900.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium tuberculosis 94_M4241A] gi|298496285|gb|EFI31579.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium tuberculosis 94_M4241A] Length = 286 Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 101/290 (34%), Positives = 142/290 (48%), Gaps = 23/290 (7%) Query: 104 FASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIM 163 F SSYAAG PCV CN+ +KF+ L ++ G GH + G R + Sbjct: 4 FVSSYAAGGNSEPCVRCNQQIKFAAL---SQGCGVGFRYGGHRATT------PGCRVGRL 54 Query: 164 CRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV 223 R +D ++DQSY L T QQL FP+GD K +R A GL +A+K DS DICF+ Sbjct: 55 RRAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKRQIRAEAARRGLAVANKPDSHDICFI 114 Query: 224 QQG--KYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVA----MGEP 277 G K F + +RI G +V +G +L H+G+ +TIGQRRGLG+A G P Sbjct: 115 PSGNTKAF-LGERIG---VRRGVVVDADGVVLASHDGVHGFTIGQRRGLGIAGPGPNGRP 170 Query: 278 LFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPV 337 +V +D +++ V VG L+V + R + G VD C V++R+ + V Sbjct: 171 RYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTA-GAAPSGPVD---CVVQVRAHGETV 226 Query: 338 PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387 + D ++V GVA GQ V Y D VLG I+G+ Sbjct: 227 SAVAELIGDALFVQLHAPLCGVARGQTLVLYRPDPAGDEVLGSATIAGAS 276 >gi|215412875|ref|ZP_03421581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium tuberculosis 94_M4241A] Length = 286 Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 101/290 (34%), Positives = 142/290 (48%), Gaps = 23/290 (7%) Query: 104 FASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIM 163 F SSYAAG PCV CN+ +KF+ L ++ G GH + G R + Sbjct: 4 FVSSYAAGGNSEPCVRCNQQIKFAAL---SQGCGVGFRYGGHRATT------PGCRVGRL 54 Query: 164 CRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV 223 R +D ++DQSY L T QQL FP+GD K +R A GL +A+K DS DICF+ Sbjct: 55 RRAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKRQIRAEAARRGLAVANKPDSHDICFI 114 Query: 224 QQG--KYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVA----MGEP 277 G K F + +RI G +V +G +L H+G+ +TIGQRRGLG+A G P Sbjct: 115 PSGNTKAF-LGERIG---VRRGVVVDADGVVLASHDGVHGFTIGQRRGLGIAGPGPNGRP 170 Query: 278 LFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPV 337 +V +D +++ V VG L+V + R + G VD C V++R+ + V Sbjct: 171 RYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTA-GAAPSGPVD---CVVQVRAHGETV 226 Query: 338 PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387 + D ++V GVA GQ V Y D VLG I+G+ Sbjct: 227 SAVAELIGDALFVQLHAPLCGVARGQTLVLYRPDPAGDEVLGSATIAGAS 276 >gi|194912221|ref|XP_001982459.1| GG12823 [Drosophila erecta] gi|190648135|gb|EDV45428.1| GG12823 [Drosophila erecta] Length = 411 Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 113/396 (28%), Positives = 179/396 (45%), Gaps = 36/396 (9%) Query: 32 DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91 DS+V A LL G++V+GV ++ ++ G C D+ DA C + V + Sbjct: 14 DSAVSAHLLAERGFNVLGVFMRNWDEMD---EVGRCSGEADLKDAEWACRQLGVELRQVN 70 Query: 92 YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS--VTRQLGADVLATGHYIRS 149 Y + AV F Y G TP P + CNR +KF DL LG D +ATGHY + Sbjct: 71 YVREYWTAVFSQFLDDYQLGLTPNPDILCNRHIKF-DLFHKHALENLGYDAVATGHYAGN 129 Query: 150 RL------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 L +D R I P D +DQ++FL + L FPLGD +K V+DL Sbjct: 130 SLGNFLEGTASNDEARLLI---PADTFKDQTFFLAGIPHKALQRTMFPLGDWQKSQVKDL 186 Query: 204 AREMGLD-IADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHNGI 259 A+++GL +A+K +S ICFV + + D ++ G L+ D +G ++G H GI Sbjct: 187 AKKIGLQRLANKKESTGICFVGKRNFKDFIQEYIVSKTGPFLDID----SGAVVGHHEGI 242 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL---GD 313 +T+GQR L + +P FV + S+ + V +L I + NWL Sbjct: 243 HQWTVGQRCRLSSFL-QPYFVARKEAASNTIYVAAGHNHPALLSTHIDVDPPNWLCSKSQ 301 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY--TS 370 + D +C + + ++ V ++ + +V+ + + GQ VFY T+ Sbjct: 302 KMLSD--TGSLRCRFRFQHTKPLVVCHLKISPSNSFHVELDAPLRAITPGQYAVFYNDTA 359 Query: 371 DSNEARVLGGGIISG-SKRSDAVEESLLSVIGDEFP 405 AR+L + ++ A +L+S E P Sbjct: 360 CLGSARILSANPLKKDAQTQQAHAANLVSSSTGEIP 395 >gi|307179503|gb|EFN67817.1| Thioredoxin domain-containing protein 4 [Camponotus floridanus] Length = 759 Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 102/368 (27%), Positives = 168/368 (45%), Gaps = 42/368 (11%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V V +SGGVDS+V A LLK G++V GV ++ ++ R + G+C +D DAR +CD Sbjct: 5 VAVGISGGVDSAVTALLLKNKGFNVTGVFMKNWDIRDET---GNCTVEKDYEDARWICDK 61 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + D+ + + N V Y G TP P + CN+ +KF+ V A Sbjct: 62 LKIPLIQLDFVKEYWNEVFSDLLEKYQTGYTPNPDILCNKNIKFNKFFDV---------A 112 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 H +++ D +DQ++FL QQ L FPLG+ K V+ Sbjct: 113 HVHLLQA-----------------YDSNKDQTFFLNQIPQQTLRRCMFPLGNYLKNHVKT 155 Query: 203 LAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGII 260 +A+E L IA K +S ICFV + ++ D + G+ V L+ G +G+HNGI Sbjct: 156 IAKEASLHKIAQKKESMGICFVGKREFQDFISEYIDDKP--GEYVDLDSGLSIGKHNGIH 213 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGDGLFE 317 TIGQR +G +V D+ ++ +I G +L + ++++W+ + E Sbjct: 214 KLTIGQRCRIG-GCENAYYVFSKDQKTNTIIAVDSGIHPALYTDFLITQDVHWISEEPHE 272 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 C + + + V + +D+ +++ + GQ V Y+ + Sbjct: 273 LRHSGVLSCDFRFQHRNPLITCNVYKISDNRLFIRLSVPLRAITKGQYAVLYSGE----E 328 Query: 377 VLGGGIIS 384 LGG IIS Sbjct: 329 CLGGSIIS 336 >gi|157109170|ref|XP_001650555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes aegypti] gi|157109172|ref|XP_001650556.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes aegypti] gi|157109174|ref|XP_001650557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes aegypti] gi|108868469|gb|EAT32694.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes aegypti] gi|108868470|gb|EAT32695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes aegypti] gi|108868471|gb|EAT32696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes aegypti] Length = 377 Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 114/377 (30%), Positives = 193/377 (51%), Gaps = 28/377 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDS+V A +LK+ G+DV G ++ ++ G C QD DA+++C Sbjct: 4 RVVVGVSGGVDSAVTAYMLKQKGFDVRGAFMKNWD---LIDEAGYCSGEQDWLDAQKLCR 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + ++ + + V F Y G TP P + CNR +KF+ R+ +GAD Sbjct: 61 QLRIPLEQINFVKDYWLEVFGSFLKDYDTGITPNPDILCNRHIKFNLFYKHAREKMGADA 120 Query: 141 LATGHYIRSR----LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 +ATGHY R+ L D+ R++ D+ +DQ++FL + + L FP+G M Sbjct: 121 IATGHYARTNFGPFLEKYDEHGSIRLLAGVDDI-KDQTFFLSQISAEALRRTMFPIGAMT 179 Query: 197 KESVRDLAREMGLD-IADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLN-GQIL 253 K V+ A E+GL+ A K +S ICFV + + D + + I+ GD V + G+++ Sbjct: 180 KAQVKQYAAEVGLEAFARKKESMGICFVGKRSFQDFIAEYIDTK---PGDFVDFDTGKVV 236 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV--GPRESLEVH-RIYLREINW 310 G H G+ ++T+GQ+ +G + +P FV D N + + V G L V +Y+ W Sbjct: 237 GTHKGLHHWTVGQKAKIGGCL-QPYFVFQKDVNRNVIFVVSGTDHPLLVTDMVYVENPVW 295 Query: 311 LGDGLFEDAVVDG-FKCFVKIRSSQDPVPV-FVQRNDDG--VYVDFEKSEVGVASGQACV 366 + D + DG F+C + + ++ V ++ ++DG ++V ++ + GQ V Sbjct: 296 INK---PDRLADGVFRCQFRFQHTKPLVHCSLIESSEDGNRMFVKLDEPLRAITPGQYAV 352 Query: 367 FYTSDS--NEARVLGGG 381 FY + AR++ G Sbjct: 353 FYKDEECFGSARIVKPG 369 >gi|330955382|gb|EGH55642.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae Cit 7] Length = 177 Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 71/183 (38%), Positives = 103/183 (56%), Gaps = 8/183 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 3 RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F Y AG TP P + CNR +KF L LGAD++ Sbjct: 60 KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K VR Sbjct: 120 ATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVR 174 Query: 202 DLA 204 +A Sbjct: 175 AIA 177 >gi|157117360|ref|XP_001658729.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes aegypti] gi|108876095|gb|EAT40320.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes aegypti] Length = 377 Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 114/377 (30%), Positives = 193/377 (51%), Gaps = 28/377 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDS+V A +LK+ G+DV G ++ ++ G C QD DA+++C Sbjct: 4 RVVVGVSGGVDSAVTAYMLKQKGFDVRGACMKNWD---LIDEAGYCSGEQDWLDAQKLCR 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + ++ + + V F Y G TP P + CNR +KF+ R+ +GAD Sbjct: 61 QLRIPLEQINFVKDYWLEVFGSFLKDYDTGITPNPDILCNRHIKFNLFYKHAREKMGADA 120 Query: 141 LATGHYIRSR----LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 +ATGHY R+ L D+ R++ D+ +DQ++FL + + L FP+G M Sbjct: 121 IATGHYARTNFGPFLEKYDEHGPIRLLAGVDDI-KDQTFFLSQISAEALRRTMFPIGAMT 179 Query: 197 KESVRDLAREMGLD-IADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHLN-GQIL 253 K V+ A E+GL+ A K +S ICFV + + D + + I+ GD V + G+++ Sbjct: 180 KAQVKQYAAEVGLEAFARKKESMGICFVGKRSFQDFIAEYIDTK---PGDFVDFDTGKVV 236 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV--GPRESLEVH-RIYLREINW 310 G H G+ ++T+GQ+ +G + +P FV D N + + V G L V +Y+ W Sbjct: 237 GTHKGLHHWTVGQKAKIGGCL-QPYFVFQKDVNRNVIFVVSGTDHPLLVTDMVYVENPVW 295 Query: 311 LGDGLFEDAVVDG-FKCFVKIRSSQDPVPV-FVQRNDDG--VYVDFEKSEVGVASGQACV 366 + D + DG F+C + + ++ V ++ ++DG ++V ++ + GQ V Sbjct: 296 INK---PDRLADGVFRCQFRFQHTKPLVHCSLIESSEDGNRMFVKLDEPLRAITPGQYAV 352 Query: 367 FYTSDS--NEARVLGGG 381 FY + AR++ G Sbjct: 353 FYKDEECFGSARIVKPG 369 >gi|167763337|ref|ZP_02435464.1| hypothetical protein BACSTE_01711 [Bacteroides stercoris ATCC 43183] gi|167698631|gb|EDS15210.1| hypothetical protein BACSTE_01711 [Bacteroides stercoris ATCC 43183] Length = 365 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 112/353 (31%), Positives = 167/353 (47%), Gaps = 19/353 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + V +SGGVDSSVV LL G+ +L K C A +D+ A V Sbjct: 1 MNIAVLLSGGVDSSVVVHLLCEQGHRP---SLFYIKIGKDDAEYMDCSAEEDLEMASAVA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGAD 139 +S V D + + V + G TP P V CN+ +KF V R D Sbjct: 58 RRYGLSLEVVDLHREYWDNVAAYAIEKVSRGFTPNPDVMCNKLIKFGCFEQRVGRHF--D 115 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ATGHY + L G + + +D +DQ+ FL Q+ L FPLG + K+ Sbjct: 116 FTATGHYATTVLQNG-----KTWLGTALDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQE 170 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258 VRD+A + L A + DSQ ICF+ + Y D V+R EG IV L G+ILG H G Sbjct: 171 VRDIALKAQLPSARRRDSQGICFLGRINYNDFVRRFLG--EKEGRIVELETGKILGTHRG 228 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDGL 315 +TIGQR+GLG++ G P FVV D + + + V E+ H +++ +++ + Sbjct: 229 YWFHTIGQRKGLGLS-GGPWFVVRKDTDENVIYVSHGYDTELQYGHEFSMQDFHFITENP 287 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 +E + D KIR + + + +++ G + ++ G+A GQ V Y Sbjct: 288 WE-GIKDEIPVTFKIRHAPGFIGGRLWQDETGYRIVSDEKLQGIAPGQFGVVY 339 >gi|260591395|ref|ZP_05856853.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella veroralis F0319] gi|260536761|gb|EEX19378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella veroralis F0319] Length = 360 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 118/373 (31%), Positives = 173/373 (46%), Gaps = 27/373 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD R+ V +SGGVDSSVV R G +++ K + C + +D+ A Sbjct: 7 KDKRIAVLLSGGVDSSVVVYEFARLGLHPDCFYIKI---GPEEKEEWDCNSEEDLEMATA 63 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V V D + + + V AG TP P V CNR +KF + ++G Sbjct: 64 VAHRYGCKLQVIDCHKEYWDQVTSYTMEKVKAGFTPNPDVMCNRLIKFG---AFDAKMGH 120 Query: 139 D--VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 D ++ATGHY ++ G R+ + D +DQ+ FL QL FP+G Sbjct: 121 DYDLIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIYDWQLKKAIFPIGHYA 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255 K VR++A + L A + DSQ ICF+ Y + V+R GDI+ L G+ +G Sbjct: 176 KNEVREIAEQEHLINARRKDSQGICFLGNIDYNEYVRRYLGEQV--GDIIELETGKKIGE 233 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLD--KNSSRVIVGPRESLEVHRIY-LREINWLG 312 H G+ +TIGQR+GLG+ G P FVV D +N V G + + + L + ++L Sbjct: 234 HRGLWFHTIGQRKGLGLGGG-PWFVVKKDVAQNILYVSHGYDPATTYKKDFPLHDFHFLT 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 +G+ E K KIR + + V++ DG + +S GVA GQ CV Y D Sbjct: 293 EGIKELPT----KVTFKIRHTPEYHTATVEQLSDGKCLIHSTESIHGVAPGQFCVIY--D 346 Query: 372 SNEARVLGGGIIS 384 R G G I+ Sbjct: 347 EQHHRCFGSGEIT 359 >gi|255087530|ref|XP_002505688.1| predicted protein [Micromonas sp. RCC299] gi|226520958|gb|ACO66946.1| predicted protein [Micromonas sp. RCC299] Length = 346 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 102/301 (33%), Positives = 152/301 (50%), Gaps = 34/301 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV V +SGGVDS+V A LLK G+DV GV ++ ++ +A + G C +D DAR Sbjct: 3 RVAVGLSGGVDSAVTAWLLKSAGFDVTGVLMRNWD--EAEETGGECSFEKDQRDARAAAR 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSY-AAGETPLPCVDCNRTVKFSDLL-SVTRQLGAD 139 + + D+ + + ++V PF + G TP P + CNR +KF LL R LGAD Sbjct: 61 AVGIPLTEVDFVKEYWHSVFEPFLRDFDGGGATPNPDLACNRHIKFGALLDHCLRSLGAD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +LATGHY +R+ D+ R++ R +D ++DQSYFL + + L FPLG + K Sbjct: 121 LLATGHY--ARIVRIDETNPPRLL-RGIDPDKDQSYFLASVRGESLERACFPLGGLTKRE 177 Query: 200 VRDLA---REMGLDIADKSDSQDICFVQQGKYF-DVVKRI-------------------N 236 VR+LA + + + S ICF+ + + F D ++ + Sbjct: 178 VRELAAGPANLPAAVTRRRSSAGICFIGRKRDFGDFIQEYLPAEGEMRADSSRGDRRGED 237 Query: 237 AGIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDK--NSSRVIVG 293 + G V + +G+ +GRH G+ YT GQR LG A P +VV D S+ V V Sbjct: 238 SSRGASGSFVSVESGEAVGRHGGLARYTCGQRARLGGAS-VPWYVVGKDSRGGSNSVYVA 296 Query: 294 P 294 P Sbjct: 297 P 297 >gi|167753698|ref|ZP_02425825.1| hypothetical protein ALIPUT_01979 [Alistipes putredinis DSM 17216] gi|167658323|gb|EDS02453.1| hypothetical protein ALIPUT_01979 [Alistipes putredinis DSM 17216] Length = 339 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 108/371 (29%), Positives = 171/371 (46%), Gaps = 43/371 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD RV++ SGG+DS LL+ GY V +TL + ++ AR Sbjct: 2 KDNRVLLGFSGGIDSFAAVGLLQAAGYHVTALTLDMRGDSALLEK------------ARL 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + ERF V+ F SY G TP PC CN +K+ L + LG Sbjct: 50 RAGALGIPWRMRSVRERFEREVVDYFTDSYFRGCTPAPCTRCNSRIKWPCLAAEADALGI 109 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R G +R + R D +DQSY+L+ Q+ L + P+G + K Sbjct: 110 RHIATGHYFRITSAGG-----KRYVTRAADNRKDQSYYLWDLPQEILDRVLTPMGTVIKR 164 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNGQILGRHN 257 ++ + ++AD+ +S +CF++ D ++ + AL G I+ G LG H+ Sbjct: 165 NIVE-------ELADRRESMGVCFLEGRPCRDFLRSRDKTEALRPGPIIDSAGHRLGTHD 217 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE-----SLEVHRIYLREINWLG 312 G YTIGQ++GL + G VV +D ++R++ G + +LEV L E + + Sbjct: 218 GAALYTIGQKKGLDLPPG--WAVVAIDTAANRIVAGEEKLLLHRTLEVGECRLIESDEVF 275 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 AV+ G R+ + VF + G+ ++ E A+GQ V Y + Sbjct: 276 GARDIRAVIRGIG-----RNPEGYAAVFPAAS--GIRIELEDPAWAPAAGQPVVLYRGE- 327 Query: 373 NEARVLGGGII 383 RV+GGGI+ Sbjct: 328 ---RVVGGGIL 335 >gi|303281422|ref|XP_003060003.1| predicted protein [Micromonas pusilla CCMP1545] gi|226458658|gb|EEH55955.1| predicted protein [Micromonas pusilla CCMP1545] Length = 311 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 98/295 (33%), Positives = 147/295 (49%), Gaps = 32/295 (10%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + V +SGGVDS+V A +LKR GYDV+GV ++ N +A + G C +D DA V + Sbjct: 1 IAVGISGGVDSAVTAWILKRAGYDVVGVLMR--NWDEAEETGGECAFEKDQRDAAAVARS 58 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAG-ETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140 + + D+ + + +AV PF + G TP P + CNR +KF LL + ADV Sbjct: 59 VGIELREVDFVKEYWHAVFQPFLRDFDGGASTPNPDLACNRHIKFGSLLKHCLLDVKADV 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMC--RPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 L TGHY +++ G +G + C D E+DQSYFL + Q+ L + FPLG + K Sbjct: 119 LCTGHY--AKIVRGPNG----VFCLHTAEDKEKDQSYFLASVKQEALRNACFPLGWLTKT 172 Query: 199 SVRDLA---REMGLDIADKSDSQDICFVQQGK--------YFDVVKRINAGIALEGDIVH 247 VR +A ++ + + S+ ICF+ + K Y R + A + D Sbjct: 173 EVRAIAAGPAKLPSAVTSRRSSRGICFIGRKKNFGEFVHEYLPEEGRTSEASATDSDAAS 232 Query: 248 ------LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNS--SRVIVGP 294 ++G ++G H G+ YT GQ +G A P FVV D + + V V P Sbjct: 233 GAFVSVVDGAVVGAHKGLARYTCGQGARVGGASA-PWFVVGKDSRAGVTNVYVAP 286 >gi|195400843|ref|XP_002059025.1| GJ15215 [Drosophila virilis] gi|194141677|gb|EDW58094.1| GJ15215 [Drosophila virilis] Length = 363 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 96/284 (33%), Positives = 137/284 (48%), Gaps = 23/284 (8%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV MSGGVDS+V A LLK GY+V+GV ++ ++ S G C QD+ DA C Sbjct: 5 VVVGMSGGVDSAVSAHLLKERGYNVLGVFMRNWDEHDES---GRCSGEQDLKDAELACRH 61 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--SVTRQLGADV 140 + + +Y +++ AV F Y G TP P + CN+ +KF DL L D Sbjct: 62 LQIELRQVNYVKQYWTAVFSQFLDDYQQGLTPNPDILCNKHIKF-DLFHRHALHTLQYDA 120 Query: 141 LATGHYIRSRL-----YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 +ATGHY R+ L + + P D +DQ++FL L FPLG + Sbjct: 121 VATGHYARNSLGDFLEHSSSQTPEDVRLLIPADTFKDQTFFLAGIAHAALQRTMFPLGGL 180 Query: 196 KKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 KK V+ LAR +GL +A+K +S ICFV + + ++ + H G Sbjct: 181 KKTEVKQLARRIGLHRLAEKRESTGICFVGKRDFKAFIQEY-----ISSKPGHFVDVDSG 235 Query: 255 R----HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP 294 H GI +T+GQR L + +P FV D +S +I GP Sbjct: 236 VVVGTHEGIHQWTVGQRCRLSSHL-QPYFVARKDA-ASNIIYGP 277 >gi|282878172|ref|ZP_06286968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella buccalis ATCC 35310] gi|281299590|gb|EFA91963.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella buccalis ATCC 35310] Length = 360 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 114/369 (30%), Positives = 170/369 (46%), Gaps = 21/369 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD R+ V +SGGVDSSVV L + G +++ + C + +D+ A Sbjct: 9 KDKRIAVLLSGGVDSSVVVHELAQMGLHPDCFYIKI---GPEEAEEWDCSSEEDLEMATA 65 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL-LSVTRQLG 137 V V D + + + V AG TP P V CNR +KF V Q Sbjct: 66 VAAKYGCRLQVVDCHKEYWSEVTKYTMEKVKAGYTPNPDVMCNRLIKFGAFDAKVGHQY- 124 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D++ATGHY ++ + DGK+ ++ P D +DQ+ FL QL FP+G +K Sbjct: 125 -DLIATGHYAQTEVI---DGKKW-LVTSP-DPVKDQTDFLAQIYDWQLKKALFPIGHYQK 178 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRH 256 VR++A L A + DSQ ICF+ Q Y + ++R GD++ L G+ +G H Sbjct: 179 NEVREIAEREHLVNAKRRDSQGICFLGQIDYNEYLRRYLG--EKHGDVIELETGKKIGEH 236 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G+ +TIGQR GLG G P FVV D ++ + V + Y + + D F Sbjct: 237 RGLWFHTIGQRHGLGFGGG-PWFVVKKDVQANVLYVS--RGYDPKTAYKSDFK-VHDFHF 292 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYTSDSNEA 375 +D KIR + + P +++ +G Y+ + GVA GQ CV Y D Sbjct: 293 LTEPLDMEHITFKIRHTPEYHPATIEKTAEGCYIVHAAQPIHGVAPGQFCVVY--DEQHH 350 Query: 376 RVLGGGIIS 384 R +G I+ Sbjct: 351 RCIGSAEIT 359 >gi|195564545|ref|XP_002105876.1| GD16539 [Drosophila simulans] gi|194203240|gb|EDX16816.1| GD16539 [Drosophila simulans] Length = 389 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 108/372 (29%), Positives = 171/372 (45%), Gaps = 33/372 (8%) Query: 32 DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91 DS+V A LL G+ V+GV ++ ++ + G C D+ DA C + V + Sbjct: 14 DSAVSAHLLSERGFKVLGVFMRNWDE---ADEVGRCSGEADLKDAEWACRQLGVELRQVN 70 Query: 92 YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS--VTRQLGADVLATGHYIRS 149 Y + AV F Y G TP P + CNR +KF DL LG D +ATGHY R+ Sbjct: 71 YVREYWTAVFSQFLDDYQLGLTPNPDILCNRHIKF-DLFHKHALENLGYDAVATGHYARN 129 Query: 150 RLY-----VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 L + + R ++ P D +DQ++FL ++ L FPLGD +K V+DLA Sbjct: 130 SLGNYLEGIASNNDARLLI--PADTFKDQTFFLAGIPRKALQRTMFPLGDFQKSQVKDLA 187 Query: 205 REMGLD-IADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHNGII 260 +++GL +A K +S ICFV + + D ++ G L+ D +G ++G H GI Sbjct: 188 KKIGLQRLAKKKESTGICFVGKRNFKDFIQEYITSKHGPFLDID----SGAVVGHHEGIH 243 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL---GDG 314 +T+GQR L + +P FV + S+ + V +L I + NWL Sbjct: 244 QWTVGQRCRLSSFL-QPYFVARKEAASNTIYVASGHNHPALLSTHIDVDPPNWLCSKSQK 302 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY--TSD 371 + D +C + + ++ V + + + V+ + + GQ VFY T+ Sbjct: 303 ILSD--TGSLRCRFRFQHTKPLVDCQLSISPSNTFLVELDAPLRAITPGQYAVFYDDTAC 360 Query: 372 SNEARVLGGGII 383 AR+L I Sbjct: 361 LGSARILSANPI 372 >gi|198426982|ref|XP_002121363.1| PREDICTED: similar to tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase 1 [Ciona intestinalis] Length = 437 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 112/404 (27%), Positives = 187/404 (46%), Gaps = 40/404 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+ A+SGGVDS+V A LLKR G +V+GV ++ ++ G C +D A RVC Sbjct: 3 KVICAISGGVDSAVAALLLKRRGLNVVGVFMRNWD---LEDEVGQCSVQEDATYATRVCR 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140 +++ Y + + + V +P Y G TP P + CN+ VKFS + + G V Sbjct: 60 ALDIPFYEVNLVKEYWTNVFMPMVDQYEMGNTPNPDILCNQLVKFSAFHNKCSSMFGNVV 119 Query: 141 LATGHYIRSRL-------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +ATGHY R+ L V ++R + + +D +DQ++FL + L FPLG Sbjct: 120 IATGHYARTTLNDRVLTAKVPHTAEQR--LLKAVDPFKDQTFFLHKVDRTALLRSYFPLG 177 Query: 194 DMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGD-IVHLNGQ 251 + K V+++A + + + +S ICF+ + ++ + +K N G I + G Sbjct: 178 GIFKSKVKEIAAASEISFVLKRKESAGICFIGRREFSNFIK--NYISPKPGQFICYETGN 235 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSS--RVIVGPRESLEVHRIYLREI- 308 ++G H+G +YT+GQR +G G + L +NS V+V P L +Y + + Sbjct: 236 VIGNHDGYFSYTVGQRSLIG---GLRISYAVLHRNSKDGNVLVVP--GLNHPALYRKSLV 290 Query: 309 ----NWLGDGLFEDAVV---DGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVA 360 +W+ E A++ C+ + VP V Q ++ + + + + Sbjct: 291 SGPAHWIAG---EPALLREGKPLNCYFRFCHRNSLVPCTVHQLENERLLIILQHPLRAMT 347 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEF 404 GQ V YT D LGG I S +S ++ D F Sbjct: 348 VGQDAVLYTED----ECLGGAQIDDVGPSMYESQSQDKIVFDTF 387 >gi|308811570|ref|XP_003083093.1| tRNA (ISS) [Ostreococcus tauri] gi|116054971|emb|CAL57048.1| tRNA (ISS) [Ostreococcus tauri] Length = 431 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 88/252 (34%), Positives = 128/252 (50%), Gaps = 13/252 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV +SGGVDS++ A LKR G DV T + ++ + C D+ A + Sbjct: 58 VVVGLSGGVDSAIAAWALKRCGADVTAATTKNWDGLNEDANE-DCGYRDDLRSATEIARK 116 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLGADVL 141 I + D+ + N V P+ ++A+G TP P ++CNR+VKF LL VT +G D+L Sbjct: 117 IGIPLTEIDFTREYWNDVFEPYVKAFASGATPNPDLECNRSVKFGALLRHVTDVMGGDLL 176 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R VG+ R R++ R +D +DQSYFL + + L FPLG+M K R Sbjct: 177 ATGHYARIDRGVGE---RVRLL-RGVDETKDQSYFLASVSGDALSKACFPLGEMLKSETR 232 Query: 202 DLAREMGLDIADKSDSQDICFV----QQGKYF---DVVKRINAGIALEGDIVHLNGQILG 254 + AR +GL A++ S ICF+ ++G+ DV R A +VH Sbjct: 233 EAARALGLPCAERRSSAGICFIVHRPERGRVCGRRDVASRSGRAAAQGVGVVHGRSTREN 292 Query: 255 RHNGIINYTIGQ 266 R + IG+ Sbjct: 293 RRPAKPWFVIGK 304 >gi|213023505|ref|ZP_03337952.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 238 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/211 (36%), Positives = 120/211 (56%), Gaps = 13/211 (6%) Query: 88 YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHY 146 + ++ + + V F Y AG TP P + CN+ +KF L + LGAD +ATGHY Sbjct: 5 HTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHY 64 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 +R R V +GK R + R +D +DQSYFL+ +Q+ FP+G+++K VR +A + Sbjct: 65 VR-RADV--NGKSR--LLRGLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQVRKIAED 119 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 +GL A K DS ICF+ + K+ D + R A G I+ ++G +G H G++ +T+GQ Sbjct: 120 LGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDEIGEHQGLMYHTLGQ 177 Query: 267 RRGLGV-----AMGEPLFVVYLDKNSSRVIV 292 R+GLG+ +P +VV D ++ +IV Sbjct: 178 RKGLGIGGTKDGSEDPWYVVDKDVENNVLIV 208 >gi|114320607|ref|YP_742290.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alkalilimnicola ehrlichii MLHE-1] gi|122311715|sp|Q0A8N7|MNMA_ALHEH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|114227001|gb|ABI56800.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alkalilimnicola ehrlichii MLHE-1] Length = 366 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 122/378 (32%), Positives = 179/378 (47%), Gaps = 34/378 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +VVV +SGGVDS+V A L G+ V G+ ++ + C A +D+ +A+ Sbjct: 3 KTDKVVVGLSGGVDSAVAAMRLLEAGHHVEGLFMKNWEDDDTLTH---CAAEEDLAEAQA 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + + ++ R+R V Y AG TP P + CN+ +KF L LGA Sbjct: 60 VADHLGIRLHRANFAARYREQVFEVCLREYRAGRTPNPDILCNQRIKFRAFLDHALSLGA 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY VG+ G R ++ R D +DQSYFL+ Q QL FPL ++ K Sbjct: 120 SKVATGHYAG----VGEQGGRFTLL-RGEDPHKDQSYFLYTLGQAQLRHSLFPLSELPKP 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR A GL + DS ICF+ + + + R G + GQ++G H G Sbjct: 175 EVRRQAAAAGLPNHARRDSTGICFIGERDFRAFLSRYIQ--RSPGPMETPEGQVVGEHQG 232 Query: 259 IINYTIGQRRGLGVAMG----EPLFVVY---LDKNSSRVIVG---PRESLEVHRIYLREI 308 + YT+GQRRGLG+ E + V + +N+ V+ G PR L + E+ Sbjct: 233 LAFYTLGQRRGLGLGGLPDHDEGAWYVADKDMARNALIVVQGHAHPR--LLSTALVADEL 290 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACV 366 +W+ +C VK R Q P ++ + V V F+ + V GQ+ V Sbjct: 291 SWVAGA----PPTLPLRCTVKSRYRQQDQPCALEAGPSPTSVVVRFDTPQRAVTPGQSVV 346 Query: 367 FYTSDSNEARV-LGGGII 383 FY + RV LGGGII Sbjct: 347 FY-----QGRVCLGGGII 359 >gi|21357477|ref|NP_652639.1| CG3021 [Drosophila melanogaster] gi|74872825|sp|Q9W5B6|MTU1_DROME RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1 gi|15291857|gb|AAK93197.1| LD29918p [Drosophila melanogaster] gi|22831460|gb|AAF45578.3| CG3021 [Drosophila melanogaster] gi|220955682|gb|ACL90384.1| CG3021-PA [synthetic construct] Length = 389 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 106/369 (28%), Positives = 170/369 (46%), Gaps = 33/369 (8%) Query: 32 DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91 DS+V A LL G+ V+GV ++ ++ + G C D+ DA C + V + Sbjct: 14 DSAVSAHLLAEQGFKVLGVFMRNWDE---ADEVGRCSGEADLKDAEWACRQLGVELRQVN 70 Query: 92 YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS--VTRQLGADVLATGHYIRS 149 Y + AV F Y G TP P + CNR +KF DL LG D +ATGHY R+ Sbjct: 71 YVREYWTAVFSQFLDDYQMGLTPNPDILCNRHIKF-DLFHKHALENLGYDAVATGHYARN 129 Query: 150 RLY-----VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 L + + R ++ P D +DQ++FL +++ L FPLGD +K V+DLA Sbjct: 130 SLGNYLEGIASNNDARLLI--PADTFKDQTFFLAGISRKALQRTMFPLGDFQKSQVKDLA 187 Query: 205 REMGLD-IADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHNGII 260 +++G +A K +S ICFV + + D ++ G L+ D +G ++G H GI Sbjct: 188 KKIGFQRLAKKKESTGICFVGKRNFKDFIQEYITSKRGPFLDID----SGAVVGHHEGIH 243 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL---GDG 314 +T+GQR L + +P FV + S+ + V +L I + NWL Sbjct: 244 QWTVGQRCRLSSFL-QPYFVARKEAASNTIYVASGHNHPALLSTHIAVDPPNWLCSKSQQ 302 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY--TSD 371 + D +C + + ++ V + + + V+ + + GQ VFY T+ Sbjct: 303 ILSD--TGSLRCRFRFQHTKPLVDCQLSISPSNTFLVELDAPLRAITPGQYAVFYDDTAC 360 Query: 372 SNEARVLGG 380 AR+L Sbjct: 361 LGSARILSA 369 >gi|195347526|ref|XP_002040303.1| GM19108 [Drosophila sechellia] gi|194121731|gb|EDW43774.1| GM19108 [Drosophila sechellia] Length = 389 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 107/372 (28%), Positives = 171/372 (45%), Gaps = 33/372 (8%) Query: 32 DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91 DS+V A LL G+ V+GV ++ ++ + G C D+ DA C + V + Sbjct: 14 DSAVSAHLLAERGFKVLGVFMRNWDE---ADEVGRCSGEADLKDAEWACRQLGVELRQVN 70 Query: 92 YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS--VTRQLGADVLATGHYIRS 149 Y + AV F Y G TP P + CNR +KF DL + LG D +ATGHY R+ Sbjct: 71 YVREYWTAVFSQFLDDYQLGLTPNPDILCNRHIKF-DLFHKHALKNLGYDAVATGHYARN 129 Query: 150 RLY-----VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 L + + R ++ P D +DQ++FL ++ L FPLGD +K V+DLA Sbjct: 130 SLGNYLEGIASNNDARLLI--PADTFKDQTFFLAGIPRKALQRTMFPLGDFQKSQVKDLA 187 Query: 205 REMGLD-IADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHNGII 260 +++GL +A K +S ICFV + + D ++ G L+ D +G ++G H GI Sbjct: 188 KKIGLQRLAKKKESTGICFVGKRNFKDFIQEYITSKHGPFLDID----SGAVVGHHEGIH 243 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL---GDG 314 +T+GQR L + +P FV + S+ + V +L I + NWL Sbjct: 244 QWTVGQRCRLSSFL-QPYFVARKEAASNTIYVASGHNHPALFSTHIDVDPPNWLCSKAQK 302 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY--TSD 371 + D +C + + ++ V + + + V+ + + GQ FY T+ Sbjct: 303 ILSD--TGSLRCRFRFQHTKPLVDCQLSISPSNTFLVELDAPLRAITPGQYAAFYDDTAC 360 Query: 372 SNEARVLGGGII 383 AR+L I Sbjct: 361 LGSARILSANPI 372 >gi|256370668|ref|YP_003108493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Sulcia muelleri SMDSEM] gi|256009460|gb|ACU52820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Sulcia muelleri SMDSEM] Length = 470 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 117/228 (51%), Gaps = 9/228 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV A LLK+ GY+VIG+ L K S C +D DA V Sbjct: 3 RVIVGMSGGVDSSVAALLLKKQGYEVIGIYL------KYSNIYNQCTWREDSIDAMLVSQ 56 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 T+ + Y+ D + ++ +I Y G TP P + CN +KF L L +D + Sbjct: 57 TLKIPFYIIDISKIYKKKIIKYIYKEYRKGFTPNPDILCNSKIKFKIFLEKLIDLKSDFI 116 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+ + + ++GK + +D +DQSYFL Q Q+ FPLG++ K+ VR Sbjct: 117 ATGHYVIKKE-IFENGKIYYQIKSGIDQNKDQSYFLCKLNQNQIKKSLFPLGNLTKKEVR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 +A + L A K DSQ ICF+ GK EG I+ +N Sbjct: 176 QIASKYHLINAKKKDSQGICFI--GKIKFFNFLKLKLKKKEGSIIEIN 221 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 14/139 (10%) Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVG-----PRESLEVHR 302 +G+I+G+H G +T GQR+GL + + PLFV+ D ++ + VG P +V Sbjct: 337 DGKIIGKHIGAHFFTKGQRKGLKIGGYKFPLFVIEKDIKNNILYVGMGKNHPGLYTKVVL 396 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362 I + I+W+ D KC ++ R ++ ++N +YV+FE ++ V +G Sbjct: 397 IKKKNIHWINPN--HDFFKKEVKCRIRYRQKLQKATLYKKKNK--IYVEFEIPQLAVNAG 452 Query: 363 QACVFYTSDSNEARVLGGG 381 Q V+Y ++ V+G G Sbjct: 453 QFIVWYINNE----VIGSG 467 >gi|282880951|ref|ZP_06289642.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella timonensis CRIS 5C-B1] gi|281305174|gb|EFA97243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella timonensis CRIS 5C-B1] Length = 358 Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 114/372 (30%), Positives = 168/372 (45%), Gaps = 27/372 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD R+ V +SGGVDSSVV L R G +++ + + C + +D+ A Sbjct: 7 KDKRIAVLLSGGVDSSVVVYELVRMGVQPDCFYIKI---GPEEQEEWDCTSEEDLEMATH 63 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V V D + + N V AG TP P V CNR +KF + ++G Sbjct: 64 VAAKYGCKLQVVDCHKEYWNEVTRYTMEKVKAGYTPNPDVMCNRLIKFG---AFHEKMGY 120 Query: 139 --DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 D++ATGHY ++ + G R+ + D +DQ+ FL QL FP+G + Sbjct: 121 QYDLIATGHYAQTEIIEG-----RKWLTTSPDPVKDQTDFLAQIYDWQLKKALFPIGHYQ 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQIL 253 K VR +A L A + DSQ ICF+ Q Y + ++R N G +E + G+ + Sbjct: 176 KGEVRKIAEREHLINAKRKDSQGICFLGQINYNEYLRRYIGENPGKVIELE----TGKQI 231 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G H G+ +TIGQR GLG G P FVV K+ + ++ + + Y ++ + D Sbjct: 232 GEHRGLWFHTIGQRHGLGFG-GGPWFVV--KKDVANNVLYISKGYDPQTAYQKDFK-IHD 287 Query: 314 GLFEDAVVDGFKCFVKIRSSQD-PVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 F VD KIR + + + Q D V E + GVA GQ CV Y D Sbjct: 288 FHFLTMPVDMHHVTFKIRHTPEFHSGIIEQTAPDSYTVHAETAIHGVAPGQFCVVY--DE 345 Query: 373 NEARVLGGGIIS 384 +G G I+ Sbjct: 346 QHHCCIGSGEIT 357 >gi|327313269|ref|YP_004328706.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella denticola F0289] gi|326945092|gb|AEA20977.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella denticola F0289] Length = 360 Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 119/375 (31%), Positives = 172/375 (45%), Gaps = 31/375 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDA 76 K+ R+ V +SGGVDSSVV R + + + R K + C + +D+ A Sbjct: 7 KNRRIAVLLSGGVDSSVVVYEFAR-----LDLHPDCFYIRIGPEEKEEWDCNSEEDMEMA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V V D + + N V AG TP P V CNR +KF + ++ Sbjct: 62 TAVARRFGCRLQVVDCHKEYWNQVTRYTMEKVKAGFTPNPDVMCNRLIKFG---AFDEKM 118 Query: 137 GA--DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 G D++ATGHY ++ G R+ + D +DQ+ FL QL FP+G Sbjct: 119 GHNYDLIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQLYDWQLKKALFPIGH 173 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQIL 253 +K+ VR +A L A + DSQ ICF+ Y + V R GDI+ L G+ + Sbjct: 174 YEKDEVRRIAEREHLINAHRKDSQGICFLGNIDYNEYVHRYLG--EQTGDIIELETGKKI 231 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVY--LDKNSSRVIVG-PRESLEVHRIYLREINW 310 G H G+ +TIGQR+GLG+ G P FVV +DKN V G E+ L + ++ Sbjct: 232 GEHRGLWFHTIGQRKGLGLGGG-PWFVVRKDVDKNILYVSHGYDPETAYKSNFPLHDFHF 290 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYT 369 L +G+ E K KIR + + P ++ DG + + GVA GQ CV Y Sbjct: 291 LTEGITELPE----KITFKIRHTPEYHPARAEQLPDGKCIIHSAGRIHGVAPGQFCVVY- 345 Query: 370 SDSNEARVLGGGIIS 384 D + R G G I+ Sbjct: 346 -DEHHHRCYGSGEIT 359 >gi|150010344|ref|YP_001305087.1| tRNA-specific 2-thiouridylase MnmA [Parabacteroides distasonis ATCC 8503] gi|205816895|sp|A6LIF1|MNMA_PARD8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|149938768|gb|ABR45465.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Parabacteroides distasonis ATCC 8503] Length = 358 Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 116/370 (31%), Positives = 173/370 (46%), Gaps = 24/370 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + +SGGVDSSVV LK GYD +++ K C A +D+ + Sbjct: 1 MEIAALVSGGVDSSVVVHQLKEAGYDPTIFYIRIGMEDKDGYI--DCPAEEDIEITSYIA 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + + V+ S G TP P + CN+ +KF + G D Sbjct: 59 RKYGCRFEIVSLHDEYWDRVVSYTIESVKRGLTPNPDMMCNKYIKFG---CFEEKWGKDF 115 Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY + DGK + D +DQ+ FL T+ Q+ L FP+G + K Sbjct: 116 DKIATGHYATTTEI---DGKT--WLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKS 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR +A L A + DSQ ICF+ + Y D ++R G IV L G++LG+HN Sbjct: 171 EVRAIAEAQKLPSAKRKDSQGICFLGKINYNDFIERYLG--KRPGKIVELETGKVLGKHN 228 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLF 316 G +TIGQR+GLG++ G P FV+ K+ R I+ + Y + IN G D + Sbjct: 229 GYWFHTIGQRKGLGLS-GGPWFVI--QKDIKRNIIYVSNGYDPETQYGKVINMQGFDFIT 285 Query: 317 EDAV--VDGFKCFV-KIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 ED +G K KIR + + +++R D V+ ++ G+A GQ V Y D + Sbjct: 286 EDPWGEFEGEKEITFKIRHTPEFTHGYIRRIGDLYRVESDEKIQGIAPGQYSVIY--DKD 343 Query: 374 EARVLGGGII 383 LG G+I Sbjct: 344 HHLCLGSGMI 353 >gi|10190804|emb|CAB65878.1| EG:BACR7A4.8 [Drosophila melanogaster] Length = 371 Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 102/355 (28%), Positives = 164/355 (46%), Gaps = 31/355 (8%) Query: 32 DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91 DS+V A LL G+ V+GV ++ ++ + G C D+ DA C + V + Sbjct: 14 DSAVSAHLLAEQGFKVLGVFMRNWDE---ADEVGRCSGEADLKDAEWACRQLGVELRQVN 70 Query: 92 YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS--VTRQLGADVLATGHYIRS 149 Y + AV F Y G TP P + CNR +KF DL LG D +ATGHY R+ Sbjct: 71 YVREYWTAVFSQFLDDYQMGLTPNPDILCNRHIKF-DLFHKHALENLGYDAVATGHYARN 129 Query: 150 RLY-----VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 L + + R ++ P D +DQ++FL +++ L FPLGD +K V+DLA Sbjct: 130 SLGNYLEGIASNNDARLLI--PADTFKDQTFFLAGISRKALQRTMFPLGDFQKSQVKDLA 187 Query: 205 REMGLD-IADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHNGII 260 +++G +A K +S ICFV + + D ++ G L+ D +G ++G H GI Sbjct: 188 KKIGFQRLAKKKESTGICFVGKRNFKDFIQEYITSKRGPFLDID----SGAVVGHHEGIH 243 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL---GDG 314 +T+GQR L + +P FV + S+ + V +L I + NWL Sbjct: 244 QWTVGQRCRLSSFL-QPYFVARKEAASNTIYVASGHNHPALLSTHIAVDPPNWLCSKSQQ 302 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368 + D +C + + ++ V + + + V+ + + GQ VFY Sbjct: 303 ILSD--TGSLRCRFRFQHTKPLVDCQLSISPSNTFLVELDAPLRAITPGQYAVFY 355 >gi|299141829|ref|ZP_07034964.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella oris C735] gi|298576680|gb|EFI48551.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella oris C735] Length = 366 Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 115/384 (29%), Positives = 176/384 (45%), Gaps = 44/384 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDG------YDVIGVTLQLYNSRKASKRKGSCCAGQD 72 KD R+ + +SGGVDSSVV + G Y +IG K + C + +D Sbjct: 8 KDKRIALLLSGGVDSSVVLYEMVSHGLHPDCFYIMIG---------PEEKEEWDCTSEED 58 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 + A + + V D + + + V AG TP P V CNR +KF + Sbjct: 59 LEMATALTNRFGCQLKVIDCHKEYWSQVTRYTMDKVKAGFTPNPDVMCNRLIKFG---AF 115 Query: 133 TRQLGAD--VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 ++G D ++ATGHY ++ G R+ + D +DQ+ FL QL F Sbjct: 116 DEKIGHDYDLIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIYGWQLRKAIF 170 Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-N 249 P+G +K VR++A L A + DSQ ICF+ Y + V+R G ++ GD++ L Sbjct: 171 PIGHFEKNEVREIAEREHLINAKRRDSQGICFLGNIDYNEYVRRY-LGESV-GDVIELET 228 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP--------RESLEVH 301 G+ +G H G+ +TIGQR+GLG G P FVV D + + V ++ ++H Sbjct: 229 GKKIGEHKGLWFHTIGQRKGLGFGGG-PWFVVKKDVERNILYVSHGYDPETAYKQDFKIH 287 Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVA 360 + G L E F KIR + + +P +++ + YV S++ GVA Sbjct: 288 DFHATTYCPEGTALPELPERITF----KIRHTPEYLPATIEKTGENAYVIHADSKIHGVA 343 Query: 361 SGQACVFYTSDSNEARVLGGGIIS 384 GQ CV Y D+ G G I+ Sbjct: 344 PGQFCVVY--DAQHHYCYGSGEIT 365 >gi|238063188|ref|ZP_04607897.1| tRNA-specific 2-thiouridylase mnmA [Micromonospora sp. ATCC 39149] gi|237884999|gb|EEP73827.1| tRNA-specific 2-thiouridylase mnmA [Micromonospora sp. ATCC 39149] Length = 223 Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 116/229 (50%), Gaps = 13/229 (5%) Query: 162 IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDIC 221 ++ R +DL +DQSY L T+ QL FPLGD K VR+ A GL +ADK DS DIC Sbjct: 1 MLRRSVDLAKDQSYVLAVLTRAQLDRSVFPLGDSTKAQVREEAARRGLAVADKPDSHDIC 60 Query: 222 FVQQGKYFD-VVKRINAGIALEGDIV-HLNGQILGRHNGIINYTIGQRRGLGV----AMG 275 F+ G + R+ G++V L G ++G H G YT+GQRRGL + G Sbjct: 61 FIADGDTRGFLAGRLGEA---PGEVVDALTGAVVGSHTGAYAYTVGQRRGLHLDRPAPDG 117 Query: 276 EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQD 335 P +V+ + ++ V VGP E+LEV + W G + +C V++R+ D Sbjct: 118 RPRYVLSITPKTNTVTVGPAEALEVRAVRAERPVWTGG----ERPAGPMECEVQLRAHGD 173 Query: 336 PVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 VP V+ D + + + GVA+GQA V Y D VLG ++ Sbjct: 174 VVPATVELTGDTLRAELRRPVRGVAAGQAVVAYRPDPAGDVVLGSATVA 222 >gi|317473871|ref|ZP_07933151.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA] gi|316909948|gb|EFV31622.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA] Length = 365 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 115/358 (32%), Positives = 165/358 (46%), Gaps = 21/358 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + V +SGGVDSSVV LL G+ +L K C A +D+ A V Sbjct: 1 MNIAVLLSGGVDSSVVVHLLCEQGHRP---SLFYIKIGKDDADYMDCSAEEDLEMASAVA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +S V D + + V G TP P V CN+ +KF R G D Sbjct: 58 RRYGLSLEVVDLHREYWDNVAAYAIDKVRRGLTPNPDVMCNKLIKFG---CFERYAGKDF 114 Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 ATGHY + L G + + +D +DQ+ FL Q+ L FPLG + K+ Sbjct: 115 DFTATGHYAATILQNG-----KVWLGTALDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQ 169 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VRD+A + L A + DSQ ICF+ + Y D V+R EG I+ L G+ILG H Sbjct: 170 EVRDIALKAKLPSARRRDSQGICFLGKINYNDFVRRFLG--EKEGRIIELETGKILGTHR 227 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY---LREINWLGDG 314 G +TIGQR+GLG+ G P FVV D + + + V E Y +++ +++ + Sbjct: 228 GYWFHTIGQRKGLGLG-GGPWFVVRKDTDENVIYVSRGYETEQQYGYEFSMQDFHFITEN 286 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 +E V KIR + D + + ++ DG + E+ G+A GQ V Y S Sbjct: 287 PWE-GVEGEIPVTFKIRHTPDFIGGKLLQDGDGYRIVSEEKLQGIAPGQFGVVYDEAS 343 >gi|223942189|gb|ACN25178.1| unknown [Zea mays] Length = 329 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 103/292 (35%), Positives = 142/292 (48%), Gaps = 30/292 (10%) Query: 106 SSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCR 165 + Y G TP P V CN +KF L LG D +A+GHY ++ + ++ Sbjct: 3 NEYRCGRTPNPDVLCNTRIKFGSFLEAIENLGFDYIASGHYAHVVHPSAENTEAPSVLQL 62 Query: 166 PMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQ 225 D +DQ+YFL +Q QL L FPLG + K+ VR LA +MGL + DSQ ICF+ + Sbjct: 63 SKDKIKDQTYFLSHLSQSQLRRLLFPLGCITKDEVRRLATQMGLPNQGRKDSQGICFLGK 122 Query: 226 GKYFDVVKRI---NAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVY 282 K+ + V+R GI LE + +G LG H G YTIGQR+GL + G P +VV Sbjct: 123 VKFSEFVERHIGEKEGIILEAE----SGDYLGIHRGFWFYTIGQRQGLRLPGG-PWYVVE 177 Query: 283 LDKNSSRVIVGPR-ESLEVHRIYLR--EINWL---GDGLFEDAVVDGFKCFVKIRSSQD- 335 D ++ V V SL+ R R +NW G G E KC K+R S + Sbjct: 178 KDVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFDNCGPGNNEQ-----LKC--KVRHSPEF 230 Query: 336 ----PVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 V + N D + V + + G+A+GQ FY+ E LG GII Sbjct: 231 HDCTLVKERSEENGDALVVHLAEDDQGLAAGQFAAFYS----ENVCLGSGII 278 >gi|288799734|ref|ZP_06405193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella sp. oral taxon 299 str. F0039] gi|288332982|gb|EFC71461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella sp. oral taxon 299 str. F0039] Length = 357 Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 114/375 (30%), Positives = 177/375 (47%), Gaps = 23/375 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 +++N +D ++ V +SGGVDSSVV L + G +++ + + C + +D+ Sbjct: 1 MNENLQDKKIAVLLSGGVDSSVVLYELVQQGLKPDCFYIKI---GPEQEEEWDCSSEEDL 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 A V V D + + + V AG TP P V CNR +KF Sbjct: 58 EMATAVAHRYGCKLEVIDCHKEYWDQVTKYTMDKVKAGFTPNPDVMCNRLIKFGAFHD-K 116 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + D++ATGHY ++ + G ++ ++ P D +DQ+ FL QL FP+G Sbjct: 117 KGKDYDLIATGHYAQTEIING----KKWLVTSP-DPVKDQTDFLAQIYDWQLKKAIFPIG 171 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNG 250 +K+ VR +A L A + DSQ ICF+ + Y D +++ N G LE + N Sbjct: 172 HFQKDEVRVIAEREHLINAKRKDSQGICFLGKINYNDYIRKYLGENIGEVLE---LQTNK 228 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 +I G+H G+ YTIGQR GLG G P FVV D N++ + V + E + E Sbjct: 229 RI-GQHKGLWFYTIGQRHGLGFGGG-PWFVVKKDVNNNILYVS--KGYEPSSAFKSEFG- 283 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYT 369 + D F VD KIR + + +++ ++ Y + + + GVA GQ CV Y Sbjct: 284 VSDFHFLTEEVDLSNVTFKIRHTPEFHKARMEKINNNEYRLYSECPIHGVAPGQFCVVY- 342 Query: 370 SDSNEARVLGGGIIS 384 D R +G G IS Sbjct: 343 -DEEHHRCIGSGEIS 356 >gi|256839194|ref|ZP_05544704.1| tRNA methyl transferase [Parabacteroides sp. D13] gi|256740113|gb|EEU53437.1| tRNA methyl transferase [Parabacteroides sp. D13] Length = 358 Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 117/370 (31%), Positives = 173/370 (46%), Gaps = 24/370 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + +SGGVDSSVV LK GYD +++ K C A +D+ + Sbjct: 1 MEIAALVSGGVDSSVVVHQLKEAGYDPTIFYIRIGMEDKDGYI--DCPAEEDIEITSYIA 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + + V+ S G TP P + CN+ +KF + G D Sbjct: 59 RKYGCRFEIVSLHDEYWDRVVSYTIESVKRGLTPNPDMMCNKYIKFG---CFEEKWGKDF 115 Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY + DGK + D +DQ+ FL T+ Q+ L FP+G + K Sbjct: 116 DKIATGHYATTTEI---DGKI--WLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKS 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR +A L A + DSQ ICF+ + Y D ++R G IV L G++LG+HN Sbjct: 171 EVRAIAEAQKLPSAKRKDSQGICFLGKINYNDFIERYLG--KRPGKIVELETGKVLGKHN 228 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLF 316 G +TIGQR+GLG++ G P FV+ K+ R I+ + Y + IN G D + Sbjct: 229 GYWFHTIGQRKGLGLS-GGPWFVI--QKDIKRNIIYVSNGYDPETQYGKVINMQGFDFIT 285 Query: 317 EDAV--VDGFKCFV-KIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 ED +G K KIR + + +V+R D V+ ++ G+A GQ V Y D + Sbjct: 286 EDPWGEFEGEKEITFKIRHTPEFTHGYVRRIGDLYRVESDEKIQGIAPGQYSVIY--DKD 343 Query: 374 EARVLGGGII 383 LG G+I Sbjct: 344 HHLCLGSGMI 353 >gi|288802136|ref|ZP_06407577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella melaninogenica D18] gi|288335571|gb|EFC74005.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella melaninogenica D18] Length = 360 Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 115/370 (31%), Positives = 171/370 (46%), Gaps = 27/370 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+ V +SGGVDSSVV R G +++ K C + +D+ A V Sbjct: 10 RIAVLLSGGVDSSVVVYEFARLGLHPDCFYIKI---GPEEKEDWDCNSEEDLEMATLVAR 66 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD-- 139 V D + + + V AG TP P V CNR +KF + ++G D Sbjct: 67 RFGCKLEVIDCHKEYWDKVTRYTMEKVKAGFTPNPDVMCNRLIKFG---AFDEKMGHDYD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ATGHY ++ G R+ + D +DQ+ FL QL FP+G +K Sbjct: 124 LIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIYDWQLKKAIFPIGHYEKNE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258 VR++A L A + DSQ ICF+ Y + V+R G + GD++ L G+ +G H G Sbjct: 179 VREIAERENLINAHRKDSQGICFLGNIDYNEYVRRY-LGEEI-GDVIELETGKKIGEHKG 236 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLD--KNSSRVIVGPRESLEVHRIY-LREINWLGDGL 315 + +TIGQR+GLG+ G P FV+ D KN V G + + + L + ++L +G+ Sbjct: 237 LWFHTIGQRKGLGLGGG-PWFVIKKDVTKNILYVSHGYDPATAYKKDFPLHDFHFLTEGI 295 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYTSDSNE 374 K KIR + + P V++ DG + + GVA GQ CV Y D Sbjct: 296 ----TTLPEKITFKIRHTPEYHPATVEQLSDGRCIIHSTENIHGVAPGQFCVVY--DEQH 349 Query: 375 ARVLGGGIIS 384 R G G I+ Sbjct: 350 HRCFGSGEIT 359 >gi|298498767|ref|ZP_07008574.1| LOW QUALITY PROTEIN: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae MAK 757] gi|297543100|gb|EFH79150.1| LOW QUALITY PROTEIN: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae MAK 757] Length = 263 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 85/275 (30%), Positives = 142/275 (51%), Gaps = 27/275 (9%) Query: 122 RTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 + +KF L + L AD +A GHY+R +G++ + M R +D +DQSYFL+ Sbjct: 1 KEIKFKAFLEFADEVLDADYIAMGHYVRRTF--PQNGEKPQ-MLRGLDGNKDQSYFLYTL 57 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 + +Q+ FP+G+++K VR +A E GL A K DS ICF+ + K+ D + R A Sbjct: 58 SHEQVARTLFPVGELEKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--A 115 Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV--- 292 G I G+++G H G++ +T+GQR+GL + + +P +V DK+ R ++ Sbjct: 116 QPGKIETPEGKVIGEHQGLMYHTLGQRKGLHIGGMKESSEQPWYVA--DKDLKRNVLIAV 173 Query: 293 --GPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVY 349 L+ H + +++W+ + + +C VK R Q + + +DD + Sbjct: 174 QGADHPLLKSHGLVAAQLHWVD----RTPITEPVRCSVKTRYRQSDIACTIIPLSDDRIK 229 Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 V F++ +V V GQ+ VFY + LGGGII Sbjct: 230 VMFDEPQVAVTPGQSAVFYQGEI----CLGGGIIE 260 >gi|220903867|ref|YP_002479179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868166|gb|ACL48501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 425 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 122/427 (28%), Positives = 178/427 (41%), Gaps = 92/427 (21%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVT-LQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 V VA+SGGVDS +L++ GY V+ + L L ++ A + C Sbjct: 21 VAVAVSGGVDSLCALVMLQQAGYSVLALHGLFLPDA-----------APEPPPGLAAACA 69 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + V +V D F V+ PFA++YAAG TP PC CNR +KF L LGA L Sbjct: 70 ALGVPLHVADLRPVFEREVLAPFAAAYAAGRTPNPCALCNRAIKFGALFDAAMGLGAQRL 129 Query: 142 ATGHYIR-------------------------SRLYVGDD------------GKRRRIMC 164 ATGHY R +R+ D+ G ++ Sbjct: 130 ATGHYARLAAAPEDAVTALLPEGLDPAASRDNARISAVDNGCGCTEGRHGVSGAHPPLLA 189 Query: 165 RPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQ 224 D +DQSYFL +++L FPL + K R++ GL + ++SQDICF Sbjct: 190 AAHDAAKDQSYFLSLVPRERLARACFPLAEQDKARSREIVARAGLAVPVPNESQDICFAP 249 Query: 225 ------------QGKYFDVVKRINAGIAL----EGDIVHLNG----QILGRHNGIINYTI 264 Y ++R AL G + + + + RH G+ YT Sbjct: 250 VVSGAATAGLAAADAYRPFLERRWQKAALVPPGPGPVFLRDAAGGLREIARHKGLWRYTE 309 Query: 265 GQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR-------IYLREINWLGDGLFE 317 GQR+GLG+A EPL+V+ D ++ ++VGPR L V R + L + W G+ L Sbjct: 310 GQRKGLGIAHSEPLYVLAKDGTANALVVGPRALLGVTRCLTGAANVSLPQQYWTGELL-- 367 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 V++R Q P P V + G + + F + + A GQ Y Sbjct: 368 ----------VRLRHRQKPSPAVVTLDASGRLDICFAEPQFPSAPGQVAAVY---DGRGH 414 Query: 377 VLGGGII 383 VL GI+ Sbjct: 415 VLAAGIV 421 >gi|255012392|ref|ZP_05284518.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides sp. 2_1_7] gi|262382361|ref|ZP_06075498.1| tRNA methyl transferase [Bacteroides sp. 2_1_33B] gi|298374740|ref|ZP_06984698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 3_1_19] gi|301308423|ref|ZP_07214377.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 20_3] gi|262295239|gb|EEY83170.1| tRNA methyl transferase [Bacteroides sp. 2_1_33B] gi|298269108|gb|EFI10763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 3_1_19] gi|300833893|gb|EFK64509.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 20_3] Length = 358 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 116/370 (31%), Positives = 173/370 (46%), Gaps = 24/370 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + +SGGVDSSVV LK GYD +++ K C A +D+ + Sbjct: 1 MEIAALVSGGVDSSVVVHQLKEAGYDPTIFYIRIGMEDKDGYI--DCPAEEDIEITSYIA 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + + V+ S G TP P + CN+ +KF + G D Sbjct: 59 RKYGCRFEIVSLHDEYWDRVVSYTIESVKRGLTPNPDMMCNKYIKFG---CFEEKWGKDF 115 Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY + DGK + D +DQ+ FL T+ Q+ L FP+G + K Sbjct: 116 DKIATGHYATTTEI---DGKIW--LSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKS 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR +A L A + DSQ ICF+ + Y D ++R G IV L G++LG+HN Sbjct: 171 EVRAIAEAQKLPSAKRKDSQGICFLGKINYNDFIERYLG--KRPGKIVELETGKVLGKHN 228 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLF 316 G +TIGQR+GLG++ G P FV+ K+ R I+ + Y + IN G D + Sbjct: 229 GYWFHTIGQRKGLGLS-GGPWFVI--QKDIKRNIIYVSNGYDPETQYGKVINMQGFDFIT 285 Query: 317 EDAV--VDGFKCFV-KIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 ED +G K KIR + + +++R D V+ ++ G+A GQ V Y D + Sbjct: 286 EDPWGEFEGEKEITFKIRHTPEFTHGYIRRIGDLYRVESDEKIQGIAPGQYSVIY--DKD 343 Query: 374 EARVLGGGII 383 LG G+I Sbjct: 344 HHLCLGSGMI 353 >gi|317505238|ref|ZP_07963170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella salivae DSM 15606] gi|315663667|gb|EFV03402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella salivae DSM 15606] Length = 366 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 112/384 (29%), Positives = 180/384 (46%), Gaps = 44/384 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDG------YDVIGVTLQLYNSRKASKRKGSCCAGQD 72 KD R+ + +SGGVDSSVV + G Y +IG K + C + +D Sbjct: 8 KDKRIALLLSGGVDSSVVLYEMVSHGLHPDCFYIMIG---------PEEKEEWDCTSEED 58 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 + A + + V D + + + V G TP P V CNR +KF + Sbjct: 59 LEMATALTKRFDCQLKVIDCHKEYWSKVTRYTMDKVKMGFTPNPDVMCNRLIKFG---AF 115 Query: 133 TRQLG--ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 ++G D++ATGHY ++ G R+ ++ P D +DQ+ FL QL F Sbjct: 116 DEKIGFNYDLIATGHYAQTEWSDG----RKWLITSP-DPIKDQTDFLAQIYDWQLKKAIF 170 Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-N 249 P+G+ +K VR +A L A + DSQ ICF+ Y + V+R GD++ L Sbjct: 171 PIGNFEKNDVRKIAEREHLINAKRRDSQGICFLGDIDYNEYVRRYLGECV--GDVIELET 228 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP--------RESLEVH 301 G+ +G H G+ +TIGQR+GLG G P FVV D + + V ++S ++H Sbjct: 229 GKKIGEHKGLWFHTIGQRKGLGFG-GGPWFVVKKDVEHNILYVSHGYDPETAYKQSFKIH 287 Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVA 360 + + + +G+ + + + KIR + + +P +++ + Y+ S++ GVA Sbjct: 288 DFHA--VTFCSEGVALPDLPE--RITFKIRHTPEYLPAKLEKTGEQSYIIHADSKIHGVA 343 Query: 361 SGQACVFYTSDSNEARVLGGGIIS 384 GQ CV Y D+ R G G I+ Sbjct: 344 PGQFCVIY--DAEHHRCYGSGEIT 365 >gi|302346886|ref|YP_003815184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella melaninogenica ATCC 25845] gi|302150717|gb|ADK96978.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella melaninogenica ATCC 25845] Length = 360 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 115/370 (31%), Positives = 171/370 (46%), Gaps = 27/370 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+ V +SGGVDSSVV R G +++ K C + +D+ A V Sbjct: 10 RIAVLLSGGVDSSVVVYEFARLGLHPDCFYIKI---GPEEKEDWDCNSEEDLEMATLVTR 66 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD-- 139 V D + + + V AG TP P V CNR +KF + ++G D Sbjct: 67 RFGCKLEVIDCHKEYWDQVTRYTMEKVKAGFTPNPDVMCNRLIKFG---AFDEKMGHDYD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ATGHY ++ G R+ + D +DQ+ FL QL FP+G +K Sbjct: 124 LIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIYDWQLKKAIFPIGHYEKNE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258 VR++A L A + DSQ ICF+ Y + V+R G + GD++ L G+ +G H G Sbjct: 179 VREIAERENLINAHRKDSQGICFLGNIDYNEYVRRY-LGEEI-GDVIELETGKKIGEHKG 236 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLD--KNSSRVIVGPRESLEVHRIY-LREINWLGDGL 315 + +TIGQR+GLG+ G P FV+ D KN V G + + + L + ++L +G+ Sbjct: 237 LWFHTIGQRKGLGLGGG-PWFVIKKDVTKNILYVSHGYDPATAYKKDFPLHDFHFLTEGI 295 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYTSDSNE 374 K KIR + + P V++ DG + + GVA GQ CV Y D Sbjct: 296 ----TTLPEKITFKIRHTPEYHPATVEQLSDGRCIIHSTENIHGVAPGQFCVVY--DEQH 349 Query: 375 ARVLGGGIIS 384 R G G I+ Sbjct: 350 HRCFGSGEIT 359 >gi|291534007|emb|CBL07120.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Megamonas hypermegale ART12/1] Length = 135 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 68/127 (53%), Positives = 84/127 (66%), Gaps = 6/127 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V VAMSGGVDSS+ AALL GYDVIGVT+ L + S+ G A V DA++V D Sbjct: 4 KVAVAMSGGVDSSLTAALLIEQGYDVIGVTMTLSDE---SREAGGSTA---VSDAKKVAD 57 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +N+ HYV +Y ++F++ VI F S YA G TP PCV CN TVKF LL +LGAD + Sbjct: 58 ALNIPHYVVNYHKKFKDDVIKYFISEYAKGRTPNPCVRCNNTVKFGSLLKDCLELGADCV 117 Query: 142 ATGHYIR 148 ATGHY R Sbjct: 118 ATGHYAR 124 >gi|218130411|ref|ZP_03459215.1| hypothetical protein BACEGG_02000 [Bacteroides eggerthii DSM 20697] gi|217987412|gb|EEC53742.1| hypothetical protein BACEGG_02000 [Bacteroides eggerthii DSM 20697] Length = 365 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 115/358 (32%), Positives = 165/358 (46%), Gaps = 21/358 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + V +SGGVDSSVV LL G+ +L K C A +D+ A V Sbjct: 1 MNIAVLLSGGVDSSVVVHLLCEQGHRP---SLFYIKIGKDDADYMDCSAEEDLEMASAVA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +S V D + + V G TP P V CN+ +KF R G D Sbjct: 58 RRYGLSLEVVDLHREYWDNVAAYAIDKVRRGLTPNPDVMCNKLIKFG---CFERYAGKDF 114 Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 ATGHY + L G + + +D +DQ+ FL Q+ L FPLG + K+ Sbjct: 115 DFTATGHYAATILQNG-----KVWLGTALDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQ 169 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VRD+A + L A + DSQ ICF+ + Y D V+R EG I+ L G+ILG H Sbjct: 170 EVRDIALKAKLPSARRRDSQGICFLGRINYNDFVRRFLG--EKEGRIIELETGKILGTHR 227 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY---LREINWLGDG 314 G +TIGQR+GLG+ G P FVV D + + + V E Y +++ +++ + Sbjct: 228 GYWFHTIGQRKGLGLG-GGPWFVVRKDTDENVIYVSRGYETEQQYGYEFSMQDFHFITEN 286 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 +E V KIR + D + + ++ DG + E+ G+A GQ V Y S Sbjct: 287 PWE-GVEGEIPVTFKIRHTPDFIGGKLLQDGDGYRIVSEEKLQGIAPGQFGVVYDEAS 343 >gi|316971871|gb|EFV55594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Trichinella spiralis] Length = 717 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 107/379 (28%), Positives = 180/379 (47%), Gaps = 25/379 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V A+SGG+DS+V A LLK G+DVIGV ++ ++ G CC+ +D+ DA++VC Sbjct: 5 VACAISGGIDSAVTAHLLKARGFDVIGVFMKNWD---LIDEFGYCCSDKDLLDAQKVCRH 61 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVL 141 + + + + + + V Y G+TP P + CNR +KF S L D + Sbjct: 62 LKIPFHEVHFINEYWDDVFTNLLDGYVIGKTPNPDILCNRLIKFDLFFSYCMHTLKVDAV 121 Query: 142 ATGHYIRS---RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 ATGHY RS R ++ + RP D +DQ+YFL Q L FPL + K+ Sbjct: 122 ATGHYARSSFGRFLENFSPEKNAKLFRPTDKLKDQTYFLCQIPQASLRRTMFPLANWLKK 181 Query: 199 SVRDLAREMGLDIAD-KSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-ILGRH 256 VR +A +G+ + K +S IC + + + + + + +G V ++ Q +G H Sbjct: 182 DVRMMAERIGMGWLNAKKESYGICMIGKRNFKHFIS--DYVMPKKGFFVDVDSQKKVGEH 239 Query: 257 NGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 GI +T GQR + + G+ P FV +D S + V SL + + W+ Sbjct: 240 EGIHLFTRGQR--VKIPGGKCPYFVSKIDPVDSTIYVCCYNFHPSLYASSVQTLQPYWIE 297 Query: 313 DGLFEDAVVD---GFKCFVKIRSSQDPVPVFVQR--NDDGVYVDFEKSEVGVASGQACVF 367 + E V+ KC K + V++ ++ G+ V+ + +++GQ +F Sbjct: 298 EQ--EPQVLKESRKLKCEFKYQHVLRSTSCIVKKLPSELGLQVELKHPVRAISAGQYAIF 355 Query: 368 YTSDSNEARVLGGGIISGS 386 Y +D +E L +++ S Sbjct: 356 Y-NDQDECLALLRIVLTVS 373 >gi|154491735|ref|ZP_02031361.1| hypothetical protein PARMER_01351 [Parabacteroides merdae ATCC 43184] gi|154087976|gb|EDN87021.1| hypothetical protein PARMER_01351 [Parabacteroides merdae ATCC 43184] Length = 358 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 113/370 (30%), Positives = 170/370 (45%), Gaps = 24/370 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + +SGGVDSSVV LK GYD +++ K C A +D+ + Sbjct: 1 MEIAALVSGGVDSSVVVHQLKEAGYDPTIFYIRIGMEDKDGYI--DCPAEEDIEITSYIA 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + + V+ S G TP P + CN+ +KF + G D Sbjct: 59 KKYGCRFEIVSLHDEYWDRVVSYTIDSVKRGLTPNPDMMCNKYIKFG---CFEEKWGKDF 115 Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY + G + + D +DQ+ FL T+ Q+ L FP+G + K Sbjct: 116 DKIATGHYATTTEIDG-----KVWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKS 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR +A + L A + DSQ ICF+ + Y D ++R G IV L G++LG+HN Sbjct: 171 EVRAIAEQQKLPSAKRKDSQGICFLGKINYNDFIERYLG--KRTGKIVELETGKVLGKHN 228 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLF 316 G +TIGQR+GLG++ G P FV+ K+ R I+ + Y + IN G D + Sbjct: 229 GYWFHTIGQRKGLGLS-GGPWFVI--KKDIKRNIIYVSNGYDPETQYGKIINMHGFDFIT 285 Query: 317 EDA---VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 ED D + KIR + D ++R D ++ + G+A GQ V Y D + Sbjct: 286 EDPWGEFADEKEITFKIRHTPDFTHGRIRRIGDLYRIESDNKIQGIAPGQYGVVY--DKD 343 Query: 374 EARVLGGGII 383 LG G+I Sbjct: 344 HRLCLGSGMI 353 >gi|323507819|emb|CBQ67690.1| related to trna methyltransferase [Sporisorium reilianum] Length = 479 Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 109/383 (28%), Positives = 173/383 (45%), Gaps = 39/383 (10%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNS--RKASKRKGS-----CCAG 70 K RV VA+SGGVDSSV A LL + YD+ V ++ +N + + GS C Sbjct: 80 KGDRVTVALSGGVDSSVTALLLAQASHYDLHAVFMRNWNELDESGTMQPGSGGATGCTWQ 139 Query: 71 QDVYDARRVCDTI-NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 +D +D + VC + N+ + D + V P + G TP P V CNR +KF L Sbjct: 140 RDWHDVQAVCRHLGNMPVSMVDLSREYWTQVFEPALDEWRQGTTPNPDVSCNREIKFGAL 199 Query: 130 LS---VTRQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 + R+ G LATGHY +V + R ++ R D +DQ+Y+L + + +L Sbjct: 200 MERLLPEREKGRKSWLATGHYA----HVAWSEQGRPMLMRAKDRTKDQTYYLSSVAEDRL 255 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG------- 238 FPL + K VR+LA++ L A++ +S ICFV + D K I+ Sbjct: 256 AHAHFPLAHLLKSQVRELAKKHSLPTAERRESMGICFVGT-RGSDGSKGISNTQGFSTFL 314 Query: 239 ----IALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV-- 292 + G+IV + Q++ H G+ T+GQ + A + +V D ++R++ Sbjct: 315 NGYITSPPGEIVDEHAQVVATHRGLHTLTVGQGARIRGATSK-YYVAKKDIANNRIVAVQ 373 Query: 293 GPRES-LEVHRIYLREINWLG---DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR---ND 345 G + L R+Y+REI W+ ++ ++R Q V R Sbjct: 374 GKQHPMLLCRRLYVREIEWIWREPPPELKEGGAGKVTLLAQVRHRQVETECIVSRAKGGG 433 Query: 346 DGVYVDFEKSEVGVASGQACVFY 368 G V+F + + VA GQ + Sbjct: 434 SGYVVEFAEPVLAVAPGQVLGLW 456 >gi|282859182|ref|ZP_06268304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella bivia JCVIHMP010] gi|282588001|gb|EFB93184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella bivia JCVIHMP010] Length = 386 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 116/395 (29%), Positives = 181/395 (45%), Gaps = 45/395 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDA 76 KD ++ V +SGGVDSSVV R +G+ Y + + + C + +D+ A Sbjct: 7 KDKKIAVLLSGGVDSSVVVWEFAR-----LGLHPDCYYIKIGPEEAEAWDCSSEEDLEMA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 VC V D + + V AG TP P V CNR +KF + Sbjct: 62 TAVCRRFECKLEVIDCHKEYWGQVTKYTMDKVKAGFTPNPDVMCNRLIKFGAFYE-KKGY 120 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 D++ATGHY +++ DGK+ +C D +DQ+ FL QL FP+G + Sbjct: 121 EYDLIATGHYAQTKWI---DGKK--WLCTSPDPVKDQTDFLAQIYDWQLQKAIFPIGHYE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255 K VR++A L A + DSQ ICF+ Y + V+R A G+I+ L G+ +G Sbjct: 176 KNEVREIAEREHLINAKRKDSQGICFLGNIDYNEYVRRYLGENA--GEIIELETGKKIGE 233 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL- 311 H G+ +TIGQR+GLG+ G P FV+ D + + V E+ + + +++WL Sbjct: 234 HKGLWFHTIGQRKGLGLGGG-PWFVIKKDVEKNILYVSHGYDPETAYKRKFKVCDLHWLT 292 Query: 312 --------GDG-LFEDAVVDGFKCFV-----KIRSSQDPVPVFVQ-RNDDGVYVD----- 351 +G + ++ FK + KIR + + +++ +++G V+ Sbjct: 293 VSPSELEDSNGIILQNGCCSSFKHTLIPITFKIRHTPEYHQGYLEVLSEEGHLVEGSEAL 352 Query: 352 --FEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 +K GVA GQ CV Y D R G G I+ Sbjct: 353 IHAQKKIHGVAPGQFCVIY--DEEHERCFGSGEIT 385 >gi|149183668|ref|ZP_01862082.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Bacillus sp. SG-1] gi|148848616|gb|EDL62852.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Bacillus sp. SG-1] Length = 155 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 68/157 (43%), Positives = 90/157 (57%), Gaps = 11/157 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K PKD RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MKKEPKDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIR--------SRLYVGDDGKRRRI 162 +LGAD LATGHY + L V D K +RI Sbjct: 118 MKLGADYLATGHYAQVEYRDGEYKMLRVKDSNKTKRI 154 >gi|159469071|ref|XP_001692691.1| predicted protein [Chlamydomonas reinhardtii] gi|158277944|gb|EDP03710.1| predicted protein [Chlamydomonas reinhardtii] Length = 365 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 116/383 (30%), Positives = 175/383 (45%), Gaps = 38/383 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +RV V +SGGVDSS+ LL G+DV LQ++ +C +D+ AR+ Sbjct: 3 KRLRVAVLLSGGVDSSLALRLLVAAGHDVTAFYLQIWFQEDFRNFWDACPWEEDLEYARK 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL-SVTRQLG 137 VC+ + V V ++ + V+ + AG TP P + CN VKF + ++ G Sbjct: 63 VCEALGVKLEVVPLTTQYWDRVVASSVAEIRAGRTPNPDIWCNSRVKFGAFYDHLAQRHG 122 Query: 138 A--DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 A D +A+GHY R + + R ++ D +DQ+YFL T QL + FPLG + Sbjct: 123 AEFDRVASGHYARVAAAAAVEEEVRLLLT--PDAVKDQTYFLSGLTPDQLSRVMFPLGCL 180 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA---GIALEGDIVHLNGQI 252 K VR LA L ++ DSQ ICF+ + ++ + VK G LE + G+ Sbjct: 181 TKSQVRKLAAAADLANKNRKDSQGICFLGKVRFSEFVKEHLGEWHGPLLEAE----TGRP 236 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE----- 307 LG H G YT+GQR G+ + G P +VV D + V+V R + R Sbjct: 237 LGTHAGYWFYTVGQRGGIKLP-GGPWYVVAKDTARNVVLVS-RSYYDCEGGKARNAFTCG 294 Query: 308 -INWLGDGL---FEDAVVDG---FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360 NWL L V G ++C +++ P++ V E ++ G+A Sbjct: 295 PFNWLHPRLRPRLGAGVRHGPNMYRCTLRLHDGSG-APLYGT-------VVLEANDQGLA 346 Query: 361 SGQACVFYTSDSNEARVLGGGII 383 GQ VFY + LG +I Sbjct: 347 PGQYAVFYQGGT----CLGSAVI 365 >gi|198275614|ref|ZP_03208145.1| hypothetical protein BACPLE_01783 [Bacteroides plebeius DSM 17135] gi|198271243|gb|EDY95513.1| hypothetical protein BACPLE_01783 [Bacteroides plebeius DSM 17135] Length = 368 Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 111/363 (30%), Positives = 172/363 (47%), Gaps = 28/363 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 KDM V +SGGVDS+VV LL G+ D+ + + + + C A +D+ A Sbjct: 11 KDMNVAALISGGVDSAVVVHLLCEQGHKPDLFYIKIGMDTDDGLT-----CTAEEDIELA 65 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +S ++ D ++ + + V+ G TP P V CN+ +KF Q Sbjct: 66 SATARKYGLSFHIVDLQQAYWDNVVAYTVDRVRRGLTPNPDVMCNKLIKFGCFDREAGQ- 124 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 G D +ATGHY + D + D +DQ+ FL Q+ L FPLG Sbjct: 125 GYDKIATGHYASTL-----DIDGYTWLATAKDPVKDQTDFLAQIDYLQVSRLMFPLGGFL 179 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255 KE VRD+A + L A + DSQ ICF+ + Y D ++R G +V L G+++G+ Sbjct: 180 KEEVRDMAVKASLPSARRKDSQGICFLGKINYNDFIRRFLG--ERPGPVVELETGKVIGQ 237 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV-----HRIYLREINW 310 H G +TIGQR+GLG+ G P FVV DKN I+ + H +++ ++ Sbjct: 238 HRGYWFHTIGQRKGLGLG-GGPWFVV--DKNVEENIIYVSHGYDTEKQFGHFFCVKDFHF 294 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + +++ + CF KIR + V+ +DG ++V E+ G+A GQ V Y Sbjct: 295 ITLNPWKEQETE--ICF-KIRHTDTFQTGKVRFAEDGTLHVSSEEPIQGIAPGQFGVIYD 351 Query: 370 SDS 372 D+ Sbjct: 352 KDA 354 >gi|294672865|ref|YP_003573481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella ruminicola 23] gi|294474344|gb|ADE83733.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella ruminicola 23] Length = 359 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 110/371 (29%), Positives = 165/371 (44%), Gaps = 18/371 (4%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+ ++ R+ V +SGGVDSSVV R G +++ + + C + +D+ Sbjct: 4 KDIENKRIAVLLSGGVDSSVVVYEFARMGLHPDCFYIKI---GPEEEEEWDCSSEEDLEM 60 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A V V D + + V AG TP P V CNR +KF R Sbjct: 61 ATAVSHKFGCKLEVIDCHNEYWDQVTKYTMDKVRAGLTPNPDVMCNRLIKFG-AFDEKRG 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 D++ATGHY + D + +C D +DQ+ FL QL FP+G Sbjct: 120 HDYDLIATGHYAMTET----DENGDKWLCTSPDPVKDQTDFLAQIADWQLKKALFPIGHY 175 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254 K+ VR +A L A + DSQ ICF+ + Y D ++R GD++ L G+ +G Sbjct: 176 VKDEVRVIAEREHLVNAKRKDSQGICFLGKINYNDYIRRYLG--EQPGDVIELETGKRIG 233 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H G+ +TIGQR+G+G G P FVV K+ + I+ + Y + + D Sbjct: 234 EHKGLWFHTIGQRKGMGFGGG-PWFVV--KKDVANNILYVSHGYDPETAYKADFP-VHDF 289 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYTSDSN 373 F + K KIR + + P ++ + K ++ GVA GQ CV Y D + Sbjct: 290 HFLTKELQPTKITFKIRHTPEYHPATLEWTSPSTCMVHSKDKIHGVAPGQFCVVY--DKD 347 Query: 374 EARVLGGGIIS 384 R LG G I+ Sbjct: 348 HHRCLGSGEIT 358 >gi|255692219|ref|ZP_05415894.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides finegoldii DSM 17565] gi|260622083|gb|EEX44954.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides finegoldii DSM 17565] Length = 355 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 113/369 (30%), Positives = 170/369 (46%), Gaps = 29/369 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + +SGGVDSSVV LL GY TL C A +D+ + Sbjct: 1 MNIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMEGAEYMDCSAEEDIELSAATA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA-- 138 +S + D+ + + V G TP P V CN+ +KF +++G Sbjct: 58 RKYGLSLEIVDFHKEYWENVATYAIGKIRQGLTPNPDVMCNKLIKFG---CFEQRIGKEF 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D ATGHY + + DGK + D +DQ+ FL Q+ L FP+G + K Sbjct: 115 DFTATGHYATT---IQRDGKVW--LGTAKDPVKDQTDFLAQIDYLQISKLMFPIGGLTKH 169 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR++A GL A + DSQ ICF+ + Y D V+R EG IV L G+ LG H+ Sbjct: 170 EVREIADAAGLPSAKRKDSQGICFLGKINYNDFVRRFLG--EREGVIVELETGKKLGTHH 227 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDG 314 G +TIGQR+GLG++ G P FVV D + + V +E + +R+ +++ D Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVVKKDIQENIIYVSRGYGVETQYGNEFQMRDFHFITDN 286 Query: 315 LF--EDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 ++ +D VD KIR + + + + D+ ++ + G+A GQ V Y Sbjct: 287 IWKGQDKEVD---ITFKIRHTPEFTKGKLIMKGDNQFHILSSEKLQGIAPGQFGVIY--- 340 Query: 372 SNEARVLGG 380 EAR+ G Sbjct: 341 DKEARICVG 349 >gi|218264372|ref|ZP_03478229.1| hypothetical protein PRABACTJOHN_03925 [Parabacteroides johnsonii DSM 18315] gi|218222070|gb|EEC94720.1| hypothetical protein PRABACTJOHN_03925 [Parabacteroides johnsonii DSM 18315] Length = 358 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 112/370 (30%), Positives = 170/370 (45%), Gaps = 24/370 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + +SGGVDSSVV LK GYD +++ K C A +D+ + Sbjct: 1 MEIAALVSGGVDSSVVVHQLKEAGYDPTIFYIRIGMEDKDGYI--DCPAEEDIEITSYIA 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + + V+ S G TP P + CN+ +KF + G D Sbjct: 59 KKYGCRFEIVSLHDEYWDRVVSYTIDSVKRGLTPNPDMMCNKYIKFG---CFEEKWGKDF 115 Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY + G + + D +DQ+ FL T+ Q+ L FP+G + K Sbjct: 116 DKIATGHYATTTEIDG-----KVWLSTAKDPVKDQTDFLGQITRLQIQKLMFPIGHLMKS 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR +A + L A + DSQ ICF+ + Y D ++R G IV L G++LG+HN Sbjct: 171 EVRAIAEQQKLPSAKRKDSQGICFLGKINYNDFIERYLG--KRTGKIVELETGKVLGKHN 228 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLF 316 G +TIGQR+GLG++ G P FV+ K+ R ++ + Y + IN G D + Sbjct: 229 GYWFHTIGQRKGLGLS-GGPWFVI--KKDIKRNVIYVSNGYDPETQYGKIINMHGFDFIT 285 Query: 317 EDA---VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 ED D + KIR + D ++R D ++ + G+A GQ V Y D + Sbjct: 286 EDPWGEFEDEKEITFKIRHTPDFTHGRIRRIGDLYRIESDNKIQGIAPGQYGVVY--DKD 343 Query: 374 EARVLGGGII 383 LG G+I Sbjct: 344 HRLCLGSGMI 353 >gi|229495661|ref|ZP_04389390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Porphyromonas endodontalis ATCC 35406] gi|229317431|gb|EEN83335.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Porphyromonas endodontalis ATCC 35406] Length = 383 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 115/390 (29%), Positives = 181/390 (46%), Gaps = 34/390 (8%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQ 71 L + P+D + V SGGVDSSV LL + G+ D+ + + + + C A + Sbjct: 12 LQEVPRDASIAVLASGGVDSSVAVHLLLQAGFRPDLFYIRIGMEDEEGFI----DCPAEE 67 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ + + + V D + + V+ S G TP P + CN+ +KF Sbjct: 68 DMEMVTLLARKYQLHYEVIDLHKEYWERVVKYTIESVRQGLTPNPDMMCNKLIKFG---V 124 Query: 132 VTRQLGA--DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 ++G D +ATGHY + DGK + D +DQ+ FL +Q+ L Sbjct: 125 FEERVGHRYDYIATGHYASTARV---DGKT--FLATAPDPVKDQTDFLAQINFKQISKLL 179 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HL 248 FPLG + K+ VR +A E GL A + DSQ ICF+ + Y D ++R G I+ + Sbjct: 180 FPLGCLTKQQVRMVAEEAGLANAHRKDSQGICFLGKINYNDFIERYLG--KRPGRIIEYE 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG----PRESLEVHRIY 304 G+ LG H G +TIGQR+GLG++ G P FVV D + ++V P I+ Sbjct: 238 TGKTLGTHQGFWFHTIGQRKGLGLS-GGPWFVVKKDCKRNIILVSRGYDPLTQYGT-EIF 295 Query: 305 LREINWLGDGLFEDAVVDGFK-------CFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV 357 + + +++ + LF G K +KIR + + V ++R + G ++ E Sbjct: 296 VDKFDFITEDLFAPEGAVGNKEGAQVVPITLKIRHTPEFVRATIRRLERGYHIVSETPIQ 355 Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGSK 387 G+A GQ V Y +S G G+I K Sbjct: 356 GIAPGQYAVIYDPESR--LCFGSGMIVKGK 383 >gi|328864882|gb|EGG13268.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dictyostelium fasciculatum] Length = 580 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 92/303 (30%), Positives = 147/303 (48%), Gaps = 21/303 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + V +SGGVDS++V+ LL + + V V ++ ++ + G C +D DA + + Sbjct: 178 ICVGLSGGVDSAIVSYLLGKQDFKVKCVYIKSWDEKD---ELGYCSGERDYKDACDIAQS 234 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + V+ + D+ + + N V F Y G TP P V CNR +KF +QLGAD++A Sbjct: 235 LGVTLFHRDFTKEYWNRVFHSFLKDYQQGYTPNPDVFCNREIKFDVFTEHAKQLGADMIA 294 Query: 143 TGHYIR--------SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 TGHY + I+ R D +DQSYFL T +L + FPLG+ Sbjct: 295 TGHYATILHNQQQPQHQHQQQQQNNNIILKRGKDRNKDQSYFLCMTEGHKLAEAIFPLGE 354 Query: 195 MKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQI 252 K V +A ++G +I K S+ ICFV + + +++ I L G V G I Sbjct: 355 YLKNDVIAMANKIGFNNITSKRSSRGICFVGKRPLPEFLEQY---IPLVRGAFVDDKGSI 411 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR----ESLEVHRIYLREI 308 +G H G + YTIGQ+ + E F+ +D +++V V P + L + + + Sbjct: 412 IGEHKGAVCYTIGQKANIS-GRQERYFIYKVDVINNQVHVCPESVSDQYLLSNACVISHL 470 Query: 309 NWL 311 NW+ Sbjct: 471 NWI 473 >gi|281423882|ref|ZP_06254795.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella oris F0302] gi|281401970|gb|EFB32801.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella oris F0302] Length = 366 Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 116/384 (30%), Positives = 178/384 (46%), Gaps = 44/384 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDG------YDVIGVTLQLYNSRKASKRKGSCCAGQD 72 KD R+ + +SGGVDSSVV + G Y +IG K + C + +D Sbjct: 8 KDKRIALLLSGGVDSSVVLYEMVSHGLHPDCFYIMIG---------PEEKEEWDCTSEED 58 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 + A + + V D + + + V AG TP P V CNR +KF + Sbjct: 59 LEMATALTNRFGCQLKVIDCHKEYWSQVTRYTMDKVKAGFTPNPDVMCNRLIKFG---AF 115 Query: 133 TRQLGAD--VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 ++G D ++ATGHY ++ G R+ + D +DQ+ FL QL F Sbjct: 116 DEKIGHDYDLIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIYGWQLRKTIF 170 Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-N 249 P+G +K VR++A L A + DSQ ICF+ Y + V+R G ++ GD++ L Sbjct: 171 PIGHFEKNEVREIAEREHLINAKRRDSQGICFLGNIDYNEYVRRY-LGESV-GDVIELET 228 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG----PRES----LEVH 301 G+ +G H G+ +TIGQR+GLG + G P FVV D + + V P + ++H Sbjct: 229 GKKIGEHKGLWFHTIGQRKGLGFSGG-PWFVVKKDVERNILYVSHGYDPETAYKLDFKIH 287 Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVA 360 + G L E F KIR + + +P ++R + YV +++ GVA Sbjct: 288 DFHATTYCPEGTALPELPERITF----KIRHTPEYLPATLERIGEKTYVIHADNKIHGVA 343 Query: 361 SGQACVFYTSDSNEARVLGGGIIS 384 GQ CV Y D++ G G I+ Sbjct: 344 PGQFCVVY--DAHHHYCYGSGEIT 365 >gi|328859131|gb|EGG08241.1| hypothetical protein MELLADRAFT_35034 [Melampsora larici-populina 98AG31] Length = 345 Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 105/310 (33%), Positives = 153/310 (49%), Gaps = 28/310 (9%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYD----VIGVTLQLYNSRKASKRKG-SCCAGQDVYDAR 77 + +AMSGGVDSSVVA+LL R GY I V + +S K +G C +D D + Sbjct: 12 ISIAMSGGVDSSVVASLLIRSGYHHRLRAIFVKNWMDDSDVKVKDQGIRCQWKRDWDDVQ 71 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQL 136 VCD + + + D + + N V P + +G TP P V CNR +KF L + + Sbjct: 72 SVCDHLKLPCQLIDLSKAYWNQVWEPCLKIWESGGTPNPDVMCNRQIKFGILAEHLLKSD 131 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194 +LATGHY +RL +G + + +DQSY+L + L FPLG+ Sbjct: 132 PQTILATGHY--ARLKHTQEGT-TELHQAFSETSKDQSYYLSTIPSKILKRCLFPLGENG 188 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA--GIALE---GDIVHLN 249 KE VR +A+E+ L A K++S IC V+ +KR G +E G+IV + Sbjct: 189 FNKELVRKIAKEVRLPNALKNESMGICLVEPR-----IKRFEEFLGTQIEGRKGEIVLFD 243 Query: 250 GQ--ILGRHNGIINYTIGQRRGLGV--AMGEPLFVVYLDKNSSRVIVGPRE---SLEVHR 302 Q ++G H GI NYTIGQR + A + L+V D +RV V P +L + Sbjct: 244 DQKTVVGEHRGIWNYTIGQRCRINKPNAFPQKLYVAKKDLKLNRVFVVPHHDHPALYTRK 303 Query: 303 IYLREINWLG 312 I+ + W+ Sbjct: 304 IFTYDFQWIN 313 >gi|256090031|ref|XP_002581029.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methy lt ransferase [Schistosoma mansoni] gi|238666809|emb|CAZ37268.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methy lt ransferase,putative [Schistosoma mansoni] Length = 312 Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 89/296 (30%), Positives = 151/296 (51%), Gaps = 38/296 (12%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V A+SGGVDS+V A LLK+ G+ V GV + ++S K C +D DA+ VCD Sbjct: 27 VACAISGGVDSAVSAYLLKKKGFQVKGVFMTNWDSLD---EKIDCSLDKDRQDAQFVCDY 83 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL------------ 130 + + + ++ + + N V +P SY G TP P + CNR VKF+ L Sbjct: 84 LGIPFFEKNFVKEYWNYVFLPLIKSYEQGATPNPDILCNRFVKFNLLTRAVLKSKNQCAD 143 Query: 131 ---SVTRQLGADVLATGHYIRSRL-----YVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 + L AD +ATGHY ++ Y D+ + R + R +D +DQ+++L + Sbjct: 144 DDSQASSNLAADAIATGHYCQNSFGNYLQYRKDNVEAR--LLRSVDRVKDQTFWLSTISH 201 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRI---NAG 238 ++L FP+GD+ K V+ +A+++GL I + +S +CF+ + ++ + + G Sbjct: 202 KELPYCMFPVGDLLKTQVKQIAQDIGLSRIYSRRESMGMCFIGKRRFSEFIDNYLEPKPG 261 Query: 239 IA--LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV 292 + LE D Q+L H G+ ++T+GQR + G P +V +D ++ + V Sbjct: 262 VYKDLETD------QVLEEHTGVHHFTLGQRIPIKRFNG-PYYVSKMDCHNQIIYV 310 >gi|312971270|ref|ZP_07785448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 1827-70] gi|310336472|gb|EFQ01658.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 1827-70] Length = 234 Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 75/194 (38%), Positives = 114/194 (58%), Gaps = 9/194 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 7 KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADLADAQAVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 64 KLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R V DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K V Sbjct: 124 IATGHYVR-RADV--DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQV 178 Query: 201 RDLAREMGLDIADK 214 R +A ++GL A K Sbjct: 179 RKIAEDLGLVTAKK 192 >gi|255522399|ref|ZP_05389636.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL J1-175] Length = 168 Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 69/172 (40%), Positives = 99/172 (57%), Gaps = 8/172 (4%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + N D+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L Sbjct: 58 DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 LGAD +ATGHY + + VGD+ + + R +D +DQ+YFL +Q QL Sbjct: 118 ESLGADYVATGHYAQVKK-VGDEIE----LLRGVDNNKDQTYFLNQLSQDQL 164 >gi|308809381|ref|XP_003082000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (ISS) [Ostreococcus tauri] gi|116060467|emb|CAL55803.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (ISS) [Ostreococcus tauri] Length = 467 Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 113/365 (30%), Positives = 172/365 (47%), Gaps = 21/365 (5%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 ++ K +RV V +SGGVDSSV ALL+ G++ LQ++ C +D+ Sbjct: 79 ESTKPLRVAVLLSGGVDSSVALALLRAAGHECRAFYLQIWFQEDFRNTWEECPWEEDLRV 138 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS---DLLSV 132 A VC + V + + N V+ G TP P V CN VKF + L+ Sbjct: 139 AEGVCARVGVELETVPLTDAYWNLVVSDSVEEIRRGRTPNPDVLCNSRVKFGAFREWLAK 198 Query: 133 TRQLGADVLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 D +A+GHY R V G+ +M D +DQ+YFL TQ+QL + FP Sbjct: 199 AHPGEFDRVASGHYAAVERDAV--TGEASLVMS--GDAFKDQTYFLANLTQEQLRAVSFP 254 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NG 250 +G M K +R LA L A + DSQ ICF+ + K+ + + + G + GDI+ + G Sbjct: 255 VGGMPKADIRSLATSAELPNAGRKDSQGICFLGKVKFSEFIAE-HLG-EMPGDIIEVETG 312 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLD-KNSSRVIVGPRESLEVHR--IYLRE 307 ++LG+H +TIGQR GL + G P +V D N+ + SL+ R + Sbjct: 313 KVLGKHRAYWFHTIGQRSGLFL-HGGPWYVAGKDCVNNVVYVTRDYYSLDKSRDTFNVAG 371 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGV---YVDFEKSEVGVASGQ 363 NW+ + ++G + VK+R ++ F + DG V + + G+A GQ Sbjct: 372 FNWISGKEPDLENIEGLR--VKVRHGENIYSCSFKFKEIDGERCGEVTINQDDQGLAPGQ 429 Query: 364 ACVFY 368 VFY Sbjct: 430 YAVFY 434 >gi|60680859|ref|YP_211003.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis NCTC 9343] gi|253563325|ref|ZP_04840782.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 3_2_5] gi|265762789|ref|ZP_06091357.1| tRNA methyl transferase [Bacteroides sp. 2_1_16] gi|81316073|sp|Q5LFN5|MNMA2_BACFN RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|60492293|emb|CAH07058.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides fragilis NCTC 9343] gi|251947101|gb|EES87383.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 3_2_5] gi|263255397|gb|EEZ26743.1| tRNA methyl transferase [Bacteroides sp. 2_1_16] Length = 353 Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 105/358 (29%), Positives = 165/358 (46%), Gaps = 21/358 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + +SGGVDSSVV LL GY TL C A +D+ + + Sbjct: 1 MDIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMDGAEYMDCSAEEDIELSTAIA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD- 139 ++ V D + + V G+TP P V CN+ +KF +Q+G D Sbjct: 58 RRYGLALEVVDLHREYWDNVAAYAIEKIRKGQTPNPDVMCNKLIKFG---CFEQQVGKDF 114 Query: 140 -VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + ATGHY + G + + D +DQ+ FL Q+ L FP+G + K Sbjct: 115 DLTATGHYATTLQLGG-----KTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKH 169 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR++A + GL A + DSQ ICF+ + Y D V+R EG ++ G+ +G H Sbjct: 170 EVREIALQAGLPSARRKDSQGICFLGKINYNDFVRRFLG--EKEGAVIEFETGKKIGTHR 227 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY---LREINWLGDG 314 G +TIGQR+GLG+ G P FVV D + + V E Y +++ N++ D Sbjct: 228 GYWFHTIGQRKGLGLG-GGPWFVVKKDIQDNIIYVSHGYDAEQQYGYEFRMKDFNFITDN 286 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 +E + + F KIR + + + + +++G + + G+A GQ V Y ++S Sbjct: 287 PWEGSTGEEEVTF-KIRHTPEFIKGRLLHDEEGYRIISSEKLQGIAPGQFGVIYDAES 343 >gi|224419182|ref|ZP_03657188.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter canadensis MIT 98-5491] Length = 190 Score = 125 bits (315), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 71/207 (34%), Positives = 115/207 (55%), Gaps = 24/207 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARRV 79 +V++ MSGGVDSS A LL++ GY V G+ L+L++ + D Y + ++ Sbjct: 3 KVLLLMSGGVDSSYCAYLLQKQGYSVYGIYLKLHDKEEK----------HDYYTRNIQKC 52 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +++N+ + + D E F+ +V F SY G TP PC CN VKF+ + + LG + Sbjct: 53 AESLNIPYQIVDERELFKKSVYDYFVDSYKKGLTPNPCAMCNPNVKFNIAFKLAKDLGCE 112 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + + +G+ + + +D +DQSYFLF + + + FPLGD KKE Sbjct: 113 FVATGHYAQIK-----NGR----IAQAVDTHKDQSYFLFGLKPEWIEKIIFPLGDKKKEE 163 Query: 200 VRDLA-REMGL--DIADKSDSQDICFV 223 ++ +A +E+ + DSQ+ICFV Sbjct: 164 IKPIALKELPWLGTLETYKDSQEICFV 190 >gi|313204968|ref|YP_004043625.1| tRNA (5-methylaminomethyL-2-thiouridylate)-methyltransferase [Paludibacter propionicigenes WB4] gi|312444284|gb|ADQ80640.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paludibacter propionicigenes WB4] Length = 353 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 108/360 (30%), Positives = 170/360 (47%), Gaps = 25/360 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDARR 78 M + +SGGVDSSVV +LK GY T L+ + C + +D+ A Sbjct: 1 MNIATLLSGGVDSSVVVHMLKESGY-----TPSLFYIKIGMDDDELLHCTSEEDIEMASL 55 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + S V D + + + V+ G TP P V CN+ +KF +++G Sbjct: 56 IARKYGCSLDVVDLHKDYWDNVVSYTIEKVKQGLTPNPDVMCNKLIKFG---VFEQRVGK 112 Query: 139 DV--LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 D ATGHY + + +GK + D +DQ+ FL Q+ L FP+G + Sbjct: 113 DFDKTATGHYATT---LEKNGKV--YLSTAKDPIKDQTDFLAQINSLQVSKLMFPIGHLM 167 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255 K VRD+A + L A + DSQ ICF+ + Y D ++R G IV L G+ILG+ Sbjct: 168 KNEVRDIATKANLPSAKRQDSQGICFLGKVNYNDFIRRYLG--EKSGPIVELETGKILGK 225 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY---LREINWLG 312 HNG +T+GQR+GLG++ G P +V+ D ++ V E Y +R+ +++ Sbjct: 226 HNGYWFHTVGQRKGLGLS-GGPWYVIKKDVAANIVYASKGFDAEAQYGYEFSMRDFHFIT 284 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 D +E+ + F KIR + D + + +G + + G+A GQ V Y ++S Sbjct: 285 DNPWENRRSEIDVTF-KIRHTPDFTKGKIIQTPEGYRLISTERLQGIAPGQFGVVYDAES 343 >gi|34540110|ref|NP_904589.1| tRNA-specific 2-thiouridylase MnmA [Porphyromonas gingivalis W83] gi|81416613|sp|Q7MAW9|MNMA_PORGI RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|34396421|gb|AAQ65488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Porphyromonas gingivalis W83] Length = 361 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 109/372 (29%), Positives = 166/372 (44%), Gaps = 22/372 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M V +SGGVDSSVV L +GY +++ K C A +D+ + Sbjct: 1 MDVAALVSGGVDSSVVVHRLCEEGYKPAIFYIRIGMEDKDGYI--DCPAEEDIELTTLIA 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 V D + + V+ + G TP P + CN+ +KF D Sbjct: 59 RRYGCPFEVVDLHKEYWERVVSYTVETVRRGLTPNPDMMCNKLIKFG-CFEERWGYQFDR 117 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + L G + + D +DQ+ FL Q+ L FP+G + K V Sbjct: 118 IATGHYATTDLLNG-----KTYLSTAKDPVKDQTDFLAQINFAQISKLMFPIGHLLKSEV 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259 R +A GL A + DSQ ICF+ + Y D ++R EG I+ L G+++GRH G Sbjct: 173 RAIANAAGLPSAKRKDSQGICFLGKIDYNDFIERYLG--KKEGRIIELETGKVIGRHQGY 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +TIGQR+GLG++ G P FVV D + ++V + E+ D + EDA Sbjct: 231 WFHTIGQRKGLGLS-GGPWFVVKKDIKRNIILVSRGYDPDAQYGKTIEMETF-DFITEDA 288 Query: 320 VVDGF-------KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 G+ KIR + + + + + G ++ E+ G+A GQ CV Y D Sbjct: 289 YEAGYWNREDATPVTFKIRHTPEFTRGLLYKGEKGYRLESEERIQGIAPGQYCVIY--DE 346 Query: 373 NEARVLGGGIIS 384 + G G+I+ Sbjct: 347 DHHLCYGSGMIT 358 >gi|53712700|ref|YP_098692.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis YCH46] gi|81608589|sp|Q64WG8|MNMA2_BACFR RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|52215565|dbj|BAD48158.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides fragilis YCH46] Length = 353 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 105/358 (29%), Positives = 164/358 (45%), Gaps = 21/358 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + +SGGVDSSVV LL GY TL C A +D+ + + Sbjct: 1 MDIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMDGAEYMDCSAEEDIELSTAIA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD- 139 ++ V D + + V G+TP P V CN+ +KF +Q+G D Sbjct: 58 RRYGLALEVVDLHREYWDNVAAYAIEKIRKGQTPNPDVMCNKLIKFG---CFEQQVGKDF 114 Query: 140 -VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + ATGHY + G + + D +DQ+ FL Q+ L FP+G + K Sbjct: 115 DLTATGHYATTLQLGG-----KTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKH 169 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR++A GL A + DSQ ICF+ + Y D V+R EG ++ G+ +G H Sbjct: 170 EVREIALRAGLPSARRKDSQGICFLGKINYNDFVRRFLG--EKEGAVIEFETGKKIGTHR 227 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY---LREINWLGDG 314 G +TIGQR+GLG+ G P FVV D + + V E Y +++ N++ D Sbjct: 228 GYWFHTIGQRKGLGLG-GGPWFVVKKDIQDNIIYVSHGYDAEQQYGYEFRMKDFNFITDN 286 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 +E + + F KIR + + + + +++G + + G+A GQ V Y ++S Sbjct: 287 PWEGSTGEEEVTF-KIRHTPEFIKGRLLHDEEGYRIISSEKLQGIAPGQFGVIYDAES 343 >gi|301162405|emb|CBW21950.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides fragilis 638R] Length = 353 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 105/358 (29%), Positives = 164/358 (45%), Gaps = 21/358 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + +SGGVDSSVV LL GY TL C A +D+ + Sbjct: 1 MDIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMDGAEYMDCSAEEDIELCTAIA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD- 139 ++ V D + + V G+TP P V CN+ +KF +Q+G D Sbjct: 58 RRYGLALEVVDLHREYWDNVAAYAIEKIRKGQTPNPDVMCNKLIKFG---CFEQQVGKDF 114 Query: 140 -VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + ATGHY + G + + D +DQ+ FL Q+ L FP+G + K Sbjct: 115 DLTATGHYATTLQLGG-----KTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKH 169 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR++A + GL A + DSQ ICF+ + Y D V+R EG ++ G+ +G H Sbjct: 170 EVREIALQAGLPSARRKDSQGICFLGKINYNDFVRRFLG--EKEGAVIEFETGKKIGTHR 227 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY---LREINWLGDG 314 G +TIGQR+GLG+ G P FVV D + + V E Y +++ N++ D Sbjct: 228 GYWFHTIGQRKGLGLG-GGPWFVVKKDIQDNIIYVSHGYDAEQQYGYEFRMKDFNFITDN 286 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 +E + + F KIR + + + + +++G + + G+A GQ V Y ++S Sbjct: 287 PWEGSTGEEEVTF-KIRHTPEFIKGRLLHDEEGYRIISSEKLQGIAPGQFGVIYDAES 343 >gi|188994230|ref|YP_001928482.1| tRNA-specific 2-thiouridylase MnmA [Porphyromonas gingivalis ATCC 33277] gi|229486420|sp|B2RHP0|MNMA_PORG3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|188593910|dbj|BAG32885.1| putative tRNA 5-methylaminomethyl-2-thiouridylate 5-methyltransferase [Porphyromonas gingivalis ATCC 33277] Length = 361 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 108/372 (29%), Positives = 166/372 (44%), Gaps = 22/372 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M V +SGGVDSSVV L +GY +++ + C A +D+ + Sbjct: 1 MDVAALVSGGVDSSVVVHRLCEEGYKPAIFYIRI--GMEDEDGYIDCPAEEDIELTTLIA 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 V D + + V+ + G TP P + CN+ +KF D Sbjct: 59 RRYGCPFEVVDLHKEYWERVVSYTVETVRRGLTPNPDMMCNKLIKFG-CFEERWGYQFDR 117 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + L G + + D +DQ+ FL Q+ L FP+G + K V Sbjct: 118 IATGHYATTDLLNG-----KTYLSTAKDPVKDQTDFLAQINFAQISKLMFPIGHLLKSEV 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259 R +A GL A + DSQ ICF+ + Y D ++R EG I+ L G+++GRH G Sbjct: 173 RAIANAAGLPSAKRKDSQGICFLGKIDYNDFIERYLG--KKEGRIIELETGKVIGRHQGY 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +TIGQR+GLG++ G P FVV D + ++V + E+ D + EDA Sbjct: 231 WFHTIGQRKGLGLS-GGPWFVVKKDIKRNIILVSRGYDPDTQYGKTIEMETF-DFITEDA 288 Query: 320 VVDGF-------KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 G+ KIR + + + + + G ++ E+ G+A GQ CV Y D Sbjct: 289 YEAGYWNREDATPVTFKIRHTPEFTRGLLYKGEKGYRLESEERIQGIAPGQYCVIY--DE 346 Query: 373 NEARVLGGGIIS 384 + G G+I+ Sbjct: 347 DHHLCYGSGMIT 358 >gi|255008091|ref|ZP_05280217.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis 3_1_12] gi|313145808|ref|ZP_07808001.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides fragilis 3_1_12] gi|313134575|gb|EFR51935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides fragilis 3_1_12] Length = 353 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 106/358 (29%), Positives = 168/358 (46%), Gaps = 21/358 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + +SGGVDSSVV LL GY TL C A +D+ + + Sbjct: 1 MDIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMDGAEYMDCSAEEDIELSTAIA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD- 139 + V D + + V G+TP P V CN+ +KF +Q+G D Sbjct: 58 RRYGLELEVVDLHREYWDNVAAYAIEKIRKGQTPNPDVMCNKLIKFG---CFEQQVGKDF 114 Query: 140 -VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + ATGHY + L +G+ + + D +DQ+ FL Q+ L FP+G + K Sbjct: 115 DLTATGHYATT-LQLGE----KTWLGTAKDPIKDQTDFLAQIDYLQVSKLLFPIGGLMKH 169 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR++A + GL A + DSQ ICF+ + Y D V+R EG ++ L G+ +G H Sbjct: 170 EVREIALKAGLPSARRKDSQGICFLGKINYNDFVRRFLG--EKEGAVIELETGKKIGTHR 227 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY---LREINWLGDG 314 G +TIGQR+GLG+ G P FVV D + + V + Y +++ N++ Sbjct: 228 GYWFHTIGQRKGLGLG-GGPWFVVKKDIQDNIIYVSHGYDADKQYGYEFRMKDFNFITSN 286 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 ++D+ + F KIR + + + + ++ DG + + G+A GQ V Y ++S Sbjct: 287 PWKDSTGEEDVTF-KIRHTPEFIKGRLIQDADGYRIISSEKLQGIAPGQFGVIYDAES 343 >gi|323344915|ref|ZP_08085139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella oralis ATCC 33269] gi|323094185|gb|EFZ36762.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella oralis ATCC 33269] Length = 359 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 113/386 (29%), Positives = 177/386 (45%), Gaps = 39/386 (10%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDG------YDVIGVTLQLYNSRKASK 62 LN+ +L K ++ V +SGGVDSSVV L R G Y IG Q Sbjct: 2 LNAEEL----KGKKIAVLLSGGVDSSVVVYELVRLGLLPDCFYIKIGPEEQ--------- 48 Query: 63 RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122 + C + +D+ A V + D + + + V AG TP P V CNR Sbjct: 49 EQWDCSSEEDLEMATVVAARYGCRLEIVDCHKEYWSEVTRYTMDKVRAGFTPNPDVMCNR 108 Query: 123 TVKFSDLLSVTRQLGA--DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 +KF + ++G D++ATGHY ++ + G ++ ++ P D +DQ+ FL Sbjct: 109 LIKFG---AFDDKVGHRYDLIATGHYAQTEMI----GGKKWLVTSP-DPVKDQTDFLAQI 160 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 QL FP+G K+ VR++A L A + DSQ ICF+ + Y D ++R Sbjct: 161 YNWQLRKALFPIGHYMKDEVREIAEHEHLINAKRKDSQGICFLGKINYNDYIRRFLG--E 218 Query: 241 LEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE 299 GD++ L G+ +G H G+ +TIGQR GLG G P + + K+ ++ ++ + E Sbjct: 219 NPGDVIELETGRKIGMHRGLWFHTIGQRHGLGFG-GGPWYAI--KKDVAQNVLYVSKGYE 275 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-G 358 + ++ + D F VD KIR + + +++ +G Y ++ G Sbjct: 276 PQTAFQQDFK-VHDFHFLTEPVDMKHVTFKIRHTPEYHSALLEKTAEGAYTVHSTEQIQG 334 Query: 359 VASGQACVFYTSDSNEARVLGGGIIS 384 VA GQ CV Y D R G G I+ Sbjct: 335 VAPGQFCVVY--DEQHHRCFGSGEIT 358 >gi|225163879|ref|ZP_03726173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Opitutaceae bacterium TAV2] gi|224801524|gb|EEG19826.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Opitutaceae bacterium TAV2] Length = 369 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 101/376 (26%), Positives = 151/376 (40%), Gaps = 72/376 (19%) Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 QD+ DARRV D + + V + + +R+ V+ Y G TP P + CNR +KF Sbjct: 4 QDIEDARRVADQLGIPFRVVNLMDEYRDRVVAYLLDGYRRGLTPNPDIMCNREIKFGVFR 63 Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRI--------MCRPMDLERDQS-------- 174 + R G +ATGHY R R+ + + +P QS Sbjct: 64 AWARDHGFTAVATGHYAR-RVPLSAADTAPAACASTVGASLAKPASANNAQSAIVAPSGC 122 Query: 175 --------------------------YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMG 208 YFL TQ QL D RFP+GD++K +R LARE G Sbjct: 123 AGFASEAPAPSAWALHEGADPNKDQSYFLALLTQAQLADARFPIGDIEKPELRRLAREAG 182 Query: 209 LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-ILGRHNGIINYTIGQR 267 L ADK DSQ ICF+ Q K D +++ G IV Q I+G H G+ +T+GQR Sbjct: 183 LATADKKDSQGICFIGQVKMQDFLRQYVPDN--PGPIVRATDQRIIGEHRGLHYFTLGQR 240 Query: 268 RGLGVAMG---------------EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G+GV LFV + ++ + + + VH + + Sbjct: 241 KGIGVPSNTDNKAYVVTGKRSDDNTLFVAFDGADAPGLF---QTEVRVHSLQWNTPDGAP 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD----GVYVDFEKSEVGVASGQACVFY 368 ++R +P+ + D ++ FE + G+ASGQ Y Sbjct: 298 PAFLTSGGPGPHALEGRVRYRDPRIPLTITLTPDLAPATAHIRFETPQRGLASGQILALY 357 Query: 369 TSDSNEARVLGGGIIS 384 R+LGG + + Sbjct: 358 AG----PRLLGGAVYT 369 >gi|114686943|ref|XP_001137340.1| PREDICTED: tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase 1 isoform 1 [Pan troglodytes] Length = 390 Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 84/267 (31%), Positives = 130/267 (48%), Gaps = 39/267 (14%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV A+SGGVDS+V A LL+R GY V GV ++ ++S G C A +D DA RVC Sbjct: 6 HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDS---LDEHGVCTADKDCEDAYRVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140 +++ + Y + + N V F + Y G TP P + CN+ +KFS LGAD Sbjct: 63 ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122 Query: 141 LATGHY---------IRSRLYVGDDGKRRRIMC--------------RPMDLERDQSYFL 177 +ATGHY +R+RL++ +++C + D +DQ++FL Sbjct: 123 IATGHYARTSLEDHEVRTRLHLKKKSGLWKVLCFRGDWSAELAVKLLQAADSFKDQTFFL 182 Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV---- 232 +Q L FPLG + KE V+ +A E L + K +S +CF+ + + + Sbjct: 183 SQVSQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYL 242 Query: 233 -KRINAGIALEGDIVHLNGQILGRHNG 258 R I++E + ++LG H G Sbjct: 243 QPRPGHFISIE------DNKVLGTHKG 263 >gi|298384487|ref|ZP_06994047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 1_1_14] gi|298262766|gb|EFI05630.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 1_1_14] Length = 355 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 106/359 (29%), Positives = 165/359 (45%), Gaps = 22/359 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + +SGGVDSSVV LL GY TL C A +D+ + + Sbjct: 1 MNIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMDGAEYMDCSAEEDIEMSTAIA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA-- 138 +S V D + + V G TP P V CN+ +KF +Q+G Sbjct: 58 RKYGLSLEVVDLHKEYWENVAAYAIDKIKKGLTPNPDVMCNKLIKFG---CFEQQVGKNF 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D ATGHY + + DGK + D +DQ+ FL Q+ L FP+G + K+ Sbjct: 115 DFTATGHYATT---IRQDGKTW--LGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQ 169 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR++A GL A + DSQ ICF+ + Y D V+R EG I+ L G+ +G H Sbjct: 170 EVREIASRAGLPSARRKDSQGICFLGKINYNDFVRRFLG--EREGAIIELETGKKVGTHR 227 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH---RIYLREINWLGDG 314 G +TIGQR+GLG++ G P FV+ D + + V +E + + +++ + Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVIKKDVEENIIYVSHGYGVETQFGSEFRINDFHFITEN 286 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYTSDS 372 L++DA + KIR + + + + + G + ++ G+A GQ V Y ++ Sbjct: 287 LWKDAGKE-IDITFKIRHTPEFTKGKLVQEEGGQFRILSSEKLQGIAPGQFGVIYDEEA 344 >gi|307564524|ref|ZP_07627065.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella amnii CRIS 21A-A] gi|307346884|gb|EFN92180.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella amnii CRIS 21A-A] Length = 387 Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 121/397 (30%), Positives = 174/397 (43%), Gaps = 48/397 (12%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDA 76 K ++ V +SGGVDSSVV L R IG+ Y + K + C + +D+ A Sbjct: 7 KHKKIAVLLSGGVDSSVVVWELAR-----IGLHPDCYYIKIGPKEADQWDCTSEEDLEMA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V V D + + V G TP P V CNR +KF + Sbjct: 62 TAVAKRFGCKLEVVDCHKEYWGEVTKYTMDKVRVGLTPNPDVMCNRLIKFGAFYK-KKGH 120 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 D++ATGHY +++ DGK+ +C D +DQ+ FL QL FP+G Sbjct: 121 EYDLIATGHYAQTKWI---DGKK--WLCTSPDAVKDQTDFLSQIYPWQLQKAIFPIGHYA 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255 K+ VR +A L A + DSQ ICF+ Y + V+R +GDI+ G+ +G Sbjct: 176 KDEVRRIAEREHLINAARKDSQGICFLGNIDYNEYVRRYLG--ESKGDIIEKETGKKIGE 233 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLD--KNSSRVIVGPRESLEVHRIY-LREINWL- 311 H G+ +TIGQR+GLG+ G P FVV D +N V G L R + + ++WL Sbjct: 234 HKGLWFHTIGQRKGLGLGGG-PWFVVSKDVERNVLYVSHGYDPELAYKRSFKVLGLHWLT 292 Query: 312 -----------GDGLFEDAVVDGFKCFV----KIRSSQDPVPVFVQ---------RNDDG 347 G GL ED ++ + KIR + + F++ G Sbjct: 293 PEGLELFEGKDGVGLQEDLSIESHTRLIPITFKIRHTPEYHKGFLEVGSTKEALAEGGSG 352 Query: 348 VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 V + ++ GVA GQ CV Y D R G G I+ Sbjct: 353 V-IHSQQKIHGVAPGQFCVIY--DEQHDRCYGSGEIT 386 >gi|160883313|ref|ZP_02064316.1| hypothetical protein BACOVA_01282 [Bacteroides ovatus ATCC 8483] gi|156111297|gb|EDO13042.1| hypothetical protein BACOVA_01282 [Bacteroides ovatus ATCC 8483] Length = 355 Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 107/362 (29%), Positives = 163/362 (45%), Gaps = 26/362 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + +SGGVDSSVV LL GY TL C A +D+ + Sbjct: 1 MDIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMDGAEYMDCSAEEDIELSTATA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +S V D + + V G TP P V CN+ +KF +++G D Sbjct: 58 RKYGLSLEVVDLHQEYWENVAAYAIDKIRQGLTPNPDVMCNKLIKFG---CFEQRVGKDF 114 Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 ATGHY + G + + DL +DQ+ FL Q+ L FP+G + K+ Sbjct: 115 DFTATGHYATTLQRNG-----KTWLGTAKDLVKDQTDFLAQIDYLQVSKLMFPIGGLMKQ 169 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR++A + GL A + DSQ ICF+ + Y D V+R EG I+ L G+ LG H Sbjct: 170 EVREIANKAGLPSARRKDSQGICFLGKINYNDFVRRFLG--EKEGAIIELETGKKLGTHR 227 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDG 314 G +TIGQR+GLG++ G P FVV D + + V +E + + + +++ D Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVVKKDIEENTIYVSRGYGVETQYGNEFRMHDFHFITDN 286 Query: 315 LF--EDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + ++ +D KIR + D +Q + Y+ + G+A GQ V Y + Sbjct: 287 PWKGQEKEID---ITFKIRHTPDFTKGKLIQEGEKQFYILSSEKLQGIAPGQFGVIYDEE 343 Query: 372 SN 373 + Sbjct: 344 AK 345 >gi|212550689|ref|YP_002309006.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212548927|dbj|BAG83595.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 355 Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 111/374 (29%), Positives = 176/374 (47%), Gaps = 32/374 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ +SGGVDSSVV LK GYD + +Q+ + ++ C + +D+ + Sbjct: 1 MKIAALVSGGVDSSVVVHQLKDMGYDPVIFYIQI--GMENNEGYIDCSSEEDIEITTFIA 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + ++ + +I + G TP P + CN+ +KF + D Sbjct: 59 RKYGCRIEIVSLQKEYWENIIAYTIDTVHRGLTPNPDIMCNKLIKFG-IFEQRWGYEFDK 117 Query: 141 LATGHY-----IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 +ATGHY I +Y + D +DQ+YFL Q+ L FP+G + Sbjct: 118 IATGHYATTTEINDEIY----------LSTAFDKVKDQTYFLGQIDYLQISKLMFPIGHL 167 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254 +K VR +A + L A + DSQ ICF+ + Y + ++R G L G IV L G+ILG Sbjct: 168 QKSEVRIIAAKQDLPSAFRKDSQGICFLGKINYSNFIRRY-LGEKL-GKIVELETGKILG 225 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH---RIYLREINWL 311 H G YTIGQR+GL ++ G P FV+ D + V V ++ + L ++++ Sbjct: 226 NHKGYWFYTIGQRKGLYLS-GGPWFVIKKDVQQNIVFVSNDYKSKIRYSKSLNLERVHFI 284 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVY-VDFEKSEVGVASGQACVFYT 369 +F+D +D + KIR + P F + R+ VY ++ E G+A+GQ V Y Sbjct: 285 TRNIFDD-FIDTKEIAFKIRHT--PKFTFGKIRHIGNVYRIESESKIQGIAAGQFGVIY- 340 Query: 370 SDSNEARVLGGGII 383 D LG G+I Sbjct: 341 -DKRCKLCLGSGVI 353 >gi|224540371|ref|ZP_03680910.1| hypothetical protein BACCELL_05284 [Bacteroides cellulosilyticus DSM 14838] gi|224518022|gb|EEF87127.1| hypothetical protein BACCELL_05284 [Bacteroides cellulosilyticus DSM 14838] Length = 353 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 95/275 (34%), Positives = 135/275 (49%), Gaps = 17/275 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + V +SGGVDSSVV LL GY +L C A +D A + Sbjct: 1 MNISVLLSGGVDSSVVVHLLCEQGYRP---SLFYIKIGMDGTDYMDCSAEEDWEMATAIA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA-- 138 + + D ++ + V G TP P V CNR +KF +++G Sbjct: 58 HRYGLPLEMVDLQKEYWEQVAAYAIDKIRRGLTPNPDVMCNRFIKFG---CFEQKVGKEF 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + V DGK + +D +DQ+ FL Q+ L FPLG + K+ Sbjct: 115 DFIATGHYATT---VHKDGKV--WLGIAVDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQ 169 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VRD+AR GL A + DSQ ICF+ + Y D V+R +GDI+ L G+ +G H Sbjct: 170 EVRDIARNAGLPTARRRDSQGICFLGKINYNDFVRRFLG--ERQGDIIELETGKKIGTHR 227 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV 292 G +TIGQR+GLG++ G P FV+ D ++ + V Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVIRKDVEANVLYV 261 >gi|256752921|ref|ZP_05493754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter ethanolicus CCSD1] gi|256748201|gb|EEU61272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter ethanolicus CCSD1] Length = 172 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 60/148 (40%), Positives = 90/148 (60%), Gaps = 6/148 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDARRV 79 RV + MSGGVDSSV A LLK+ G+DVIG+T++++ + KA SCC+ + DA++V Sbjct: 29 RVAIGMSGGVDSSVAAYLLKKQGFDVIGLTMRVWVDHEAKAFDSDKSCCSLKATQDAKKV 88 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + + HY D + F + ++ F + Y G TP PCV CNR +KF +LL +LGA Sbjct: 89 AEILGIPHYTVDLSKIFYDKIVNYFVNEYLKGRTPNPCVLCNRQIKFGELLEKAFELGAY 148 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPM 167 +ATGHY+R D K +R + + + Sbjct: 149 YIATGHYVRKEY----DEKTKRYLLKKV 172 >gi|237725261|ref|ZP_04555742.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. D4] gi|265754225|ref|ZP_06089414.1| tRNA methyl transferase [Bacteroides sp. 3_1_33FAA] gi|229436527|gb|EEO46604.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides dorei 5_1_36/D4] gi|263234934|gb|EEZ20489.1| tRNA methyl transferase [Bacteroides sp. 3_1_33FAA] Length = 354 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 106/359 (29%), Positives = 164/359 (45%), Gaps = 24/359 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 M + +SGGVDS+VV LL + GY D+ + + + + C A +D+ Sbjct: 1 MNIAALISGGVDSAVVVHLLCKQGYKPDLFYIKIGMDGDEDLT-----CTAEEDIELCTA 55 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 ++ + D ++ + V+ G TP P V CN+ +KF L Sbjct: 56 TARKYGLNLNIIDLHRQYWDNVVAYAIDKVKHGLTPNPDVMCNKLIKFGCFEQEVGHL-Y 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D ATGHY + DGK + D +DQ+ FL Q+ L FPLG + K Sbjct: 115 DKTATGHYAS---ILEKDGKIW--LGTAQDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKN 169 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VRD+AR L A + DSQ ICF+ + Y D ++R EG I+ + G+ +G H Sbjct: 170 EVRDIARVAKLPSAQRKDSQGICFLGKINYNDFLRRFLG--EKEGAIIEMETGKRIGTHK 227 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR---IYLREINWLGDG 314 G +TIGQR+GLG++ G P FV+ D N + + V E L + +++ + Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVIRKDINENIIYVSRGYDTEKQYGTDFALHDFHFITED 286 Query: 315 LFE-DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 L+E D+ VD KIR + + + R + + + G+A GQ V Y D+ Sbjct: 287 LWEGDSPVD---ISFKIRHTDTFMKGTLTRGNGLFQIHSHEPLQGIAPGQFGVLYDKDA 342 >gi|237707989|ref|ZP_04538470.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 9_1_42FAA] gi|229457975|gb|EEO63696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 9_1_42FAA] Length = 354 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 106/359 (29%), Positives = 164/359 (45%), Gaps = 24/359 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 M + +SGGVDS+VV LL + GY D+ + + + + C A +D+ Sbjct: 1 MNIAALISGGVDSAVVVHLLCKQGYKPDLFYIKIGMDGDEDLT-----CTAEEDIELCTA 55 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 ++ + D ++ + V+ G TP P V CN+ +KF L Sbjct: 56 TARKYGLNLNIIDLHRQYWDNVVAYAIDKVKHGLTPNPDVMCNKLIKFGCFEQEVGHL-Y 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D ATGHY + DGK + D +DQ+ FL Q+ L FPLG + K Sbjct: 115 DKTATGHYAS---ILEKDGKIW--LGTAQDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKN 169 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VRD+AR L A + DSQ ICF+ + Y D ++R EG I+ + G+ +G H Sbjct: 170 EVRDIARVAKLPSAQRKDSQGICFLGKINYNDFLRRFLG--EKEGAIIEMETGKRIGTHK 227 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR---IYLREINWLGDG 314 G +TIGQR+GLG++ G P FV+ D N + + V E L + +++ + Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVIRKDINENIIYVSRGYDTEKQYGTDFALHDFHFITED 286 Query: 315 LFE-DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 L+E D+ VD KIR + + + R + + + G+A GQ V Y D+ Sbjct: 287 LWEGDSPVD---VSFKIRHTDTFMKGTLTRGNGLFQIHSHEPLQGIAPGQFGVLYDKDA 342 >gi|29345565|ref|NP_809068.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides thetaiotaomicron VPI-5482] gi|81587200|sp|Q8ABF5|MNMA1_BACTN RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 gi|29337457|gb|AAO75262.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides thetaiotaomicron VPI-5482] Length = 355 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 105/359 (29%), Positives = 164/359 (45%), Gaps = 22/359 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + +SGGVDSSVV LL GY TL C A +D+ + + Sbjct: 1 MNIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMDGAEYMDCSAEEDIEMSTAIA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA-- 138 +S V D + + V G TP P V CN+ +KF +Q+G Sbjct: 58 RKYGLSLEVVDLHKEYWENVAAYAIDKIKKGLTPNPDVMCNKLIKFG---CFEQQVGKNF 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D ATGHY + + DGK + D +DQ+ FL Q+ L FP+G + K+ Sbjct: 115 DFTATGHYATT---IRQDGKT--WLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQ 169 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR++A GL A + DSQ ICF+ + Y D V+R EG I+ L G+ +G H Sbjct: 170 EVREIASRAGLPSARRKDSQGICFLGKINYNDFVRRFLG--EREGAIIELETGKKVGTHR 227 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH---RIYLREINWLGDG 314 G +TIGQR+GLG++ G P FV+ D + + V +E + + +++ + Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVIKKDVEENIIYVSHGYGVETQFGSEFRINDFHFITEN 286 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYTSDS 372 ++DA + KIR + + + + + G + ++ G+A GQ V Y ++ Sbjct: 287 PWKDAGKE-IDITFKIRHTPEFTKGKLVQEEGGQFRILSSEKLQGIAPGQFGVIYDEEA 344 >gi|260912505|ref|ZP_05919040.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella sp. oral taxon 472 str. F0295] gi|260633384|gb|EEX51539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella sp. oral taxon 472 str. F0295] Length = 358 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 113/381 (29%), Positives = 163/381 (42%), Gaps = 51/381 (13%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++ V +SGGVDSSVV R G +++ + C + +D+ A V Sbjct: 10 KIAVLLSGGVDSSVVVYEFNRLGLHPDCFYIKI---GPEEAEEWDCASEEDLEMATAVAK 66 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 V D + + V AG TP P V CNR +KF R D++ Sbjct: 67 RFGCKLEVVDCHKEYWEQVTRYTMDKVKAGFTPNPDVMCNRLIKFG-AFHEKRGHEYDLI 125 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY ++ DGK+ ++ P D +DQ+ FL QL FP+G +K VR Sbjct: 126 ATGHYAQTEWI---DGKKW-LVTSP-DPVKDQTDFLAQIYDWQLQKAIFPIGHYQKGEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGRHNG 258 ++A L A + DSQ ICF+ + Y D ++R N G LE + + + +G H G Sbjct: 181 EIAEREHLINAKRKDSQGICFLGKINYNDYIRRFLGENPGEVLELE----SEKKIGMHRG 236 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYLREINW 310 + +TIGQR GLG G P + V D + + V ++ +VH ++L Sbjct: 237 LWFHTIGQRHGLGFGGG-PWYAVKKDVERNVLFVSKGYEPATAYKKGFKVHDLHLL---- 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQ-------DPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 A +DG KIR + +P+P D G V E GVA GQ Sbjct: 292 -------TAPLDGLDVTFKIRHTPEYHRAQLEPLP------DGGYIVHAEAPMQGVAPGQ 338 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 CV Y D R G I+ Sbjct: 339 FCVIY--DKEHHRCFGSAEIA 357 >gi|253571710|ref|ZP_04849116.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 1_1_6] gi|251838918|gb|EES67003.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 1_1_6] Length = 355 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 105/359 (29%), Positives = 164/359 (45%), Gaps = 22/359 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + +SGGVDSSVV LL GY TL C A +D+ + + Sbjct: 1 MNIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMDGAEYMDCSAEEDIEMSTAIA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA-- 138 +S V D + + V G TP P V CN+ +KF +Q+G Sbjct: 58 RKYGLSLEVVDLHKEYWENVAAYAIDKIKKGLTPNPDVMCNKLIKFG---CFEQQVGKNF 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D ATGHY + + DGK + D +DQ+ FL Q+ L FP+G + K+ Sbjct: 115 DFTATGHYATT---IRQDGKT--WLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQ 169 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR++A GL A + DSQ ICF+ + Y D V+R EG I+ L G+ +G H Sbjct: 170 EVREIASRAGLPSARRKDSQGICFLGKINYNDFVRRFLG--EREGAIIELETGKKVGTHR 227 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH---RIYLREINWLGDG 314 G +TIGQR+GLG++ G P FV+ D + + V +E + + +++ + Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVIKKDIEENIIYVSHGYGVETQFGSEFRINDFHFITEN 286 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASGQACVFYTSDS 372 ++DA + KIR + + + + + G + ++ G+A GQ V Y ++ Sbjct: 287 PWKDAGKE-IDITFKIRHTPEFTKGKLVQEEGGQFRILSSEKLQGIAPGQFGVIYDEEA 344 >gi|285921169|gb|ADC39900.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921181|gb|ADC39906.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921193|gb|ADC39912.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] Length = 188 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 101/187 (54%), Gaps = 19/187 (10%) Query: 40 LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA 99 LK G++VIG ++L+ + +++ +V + + + +++ D +E F+N Sbjct: 3 LKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVANFLQIPYHILDLQEDFKNK 54 Query: 100 VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKR 159 V +PF +Y G+TP PC CNR +K LL + LG + LATGHY R Sbjct: 55 VYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHYARL---------E 105 Query: 160 RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR--EMGLDIADKSDS 217 ++C +D +DQSYFL + ++ L L FPLG+MKKE V+ A E+ A + +S Sbjct: 106 NNLICTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQKES 165 Query: 218 QDICFVQ 224 +ICFV+ Sbjct: 166 SEICFVE 172 >gi|321265027|ref|XP_003197230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cryptococcus gattii WM276] gi|317463709|gb|ADV25443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Cryptococcus gattii WM276] Length = 469 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 109/402 (27%), Positives = 179/402 (44%), Gaps = 46/402 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKR--DGYDVI--------------------GVTLQLYNSR- 58 V V MSGGVDS+ +L+ DVI Y+S Sbjct: 71 HVTVGMSGGVDSATTLRILREFPIHLDVIFMRNWDPLLSESPPESSSSPSSISLAYSSTS 130 Query: 59 --KASKRKGSCCAGQDVYDARRVCDTINV---SHYVFDYEERFRNAVIVPFASSYAAGET 113 C +D D +V + + S + D + + + V P + G T Sbjct: 131 PINGEPNLSPCQWERDWNDVLKVATQVGIPKDSIRLVDLSKEYWSRVFEPAVGVWERGGT 190 Query: 114 PLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQ 173 P P VDCNR +KF LL V + LATGHY R + G + + R D +DQ Sbjct: 191 PNPDVDCNREIKFGALLDVLPKKDRHFLATGHYGRV-AHPPHLGVSK--LLRATDQSKDQ 247 Query: 174 SYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVV 232 +Y+L T+ QL PLG + K VR LA GL A K +S +CF+ ++GK+ D + Sbjct: 248 TYYLSQMTEPQLSRAILPLGGLLKTDVRRLAEHWGLPNAKKEESMGVCFIGERGKFGDFI 307 Query: 233 KRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYL---DKNSSR 289 + + G +++L+G+ L H G+ YT+GQR + + +P+FV +K + Sbjct: 308 SQYTSPPE-PGYLINLSGERLAEHKGLWYYTVGQRARVANQL-KPMFVAKKGVGEKGTDI 365 Query: 290 VIV-GPRESLEVHR-IYLREINWLGDGLFEDAV-VDGFKCFVKIRSSQDPVP--VFVQRN 344 ++V GP + + + ++ + +W+ + + + K +++R +PV + V + Sbjct: 366 LVVPGPDHPMLLCKDVHTSDFHWIHRTFPREQLDKEPEKVGIQVRHRMNPVGGRIVVGND 425 Query: 345 DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 V V+F +S GV+ GQ + + LG G I G+ Sbjct: 426 IKNVTVEFNESIAGVSPGQVVAVWF----DGWCLGSGFIKGT 463 >gi|189466604|ref|ZP_03015389.1| hypothetical protein BACINT_02979 [Bacteroides intestinalis DSM 17393] gi|189434868|gb|EDV03853.1| hypothetical protein BACINT_02979 [Bacteroides intestinalis DSM 17393] Length = 353 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 95/267 (35%), Positives = 128/267 (47%), Gaps = 17/267 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + V +SGGVDSSVV LL GY +L C A +D A V Sbjct: 1 MNIAVLLSGGVDSSVVVHLLCEQGYRP---SLFYIKIGMDGAEFMDCSAEEDWEMASAVA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA-- 138 + + D + + V G TP P V CNR +KF +++G Sbjct: 58 RRYGLPLEMIDLQNEYWEQVAAYAIDKIRRGLTPNPDVMCNRFIKFG---CFEQKVGKEF 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D ATGHY + V DGK + +D +DQ+ FL Q+ L FPLG + K+ Sbjct: 115 DFTATGHYATT---VSKDGKI--WLGTAVDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQ 169 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VRD+AR GL A + DSQ ICF+ + Y D V+ EGDIV +G+ +G H Sbjct: 170 EVRDIARTAGLPTARRRDSQGICFLGKINYNDFVRHFLG--EREGDIVEWESGKKIGTHR 227 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLD 284 G +TIGQR+GLG++ G P FV+ D Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVIRKD 253 >gi|212690555|ref|ZP_03298683.1| hypothetical protein BACDOR_00040 [Bacteroides dorei DSM 17855] gi|212666904|gb|EEB27476.1| hypothetical protein BACDOR_00040 [Bacteroides dorei DSM 17855] Length = 354 Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 105/359 (29%), Positives = 164/359 (45%), Gaps = 24/359 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 M + +SGGVDS+VV LL + GY D+ + + + + C A +D+ Sbjct: 1 MNIAALISGGVDSAVVVHLLCKQGYKPDLFYIKIGMDGDEDLT-----CTAEEDIELCTA 55 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 ++ + D ++ + V+ G TP P V CN+ +KF L Sbjct: 56 TARKYGLNLNIIDLHRQYWDNVVAYAIDKVKHGLTPNPDVMCNKLIKFGCFEQEVGHL-Y 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D ATGHY + DGK + D +DQ+ FL Q+ L FPLG + K Sbjct: 115 DKTATGHYAS---ILEKDGKLW--LGTAQDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKN 169 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VRD+AR L A + DSQ ICF+ + Y D ++R EG I+ + G+ +G H Sbjct: 170 EVRDIARVAKLPSAQRKDSQGICFLGKINYNDFLRRFLG--EKEGAIIEMETGKRIGTHK 227 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR---IYLREINWLGDG 314 G +TIGQR+GLG++ G P FV+ D + + + V E L + +++ + Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVIRKDIDENIIYVSRGYDTEKQYGTDFALHDFHFITED 286 Query: 315 LFE-DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 L+E D+ VD KIR + + + R + + + G+A GQ V Y D+ Sbjct: 287 LWEGDSPVD---VSFKIRHTDTFMKGTLTRGNGLFQIHSHEPLQGIAPGQFGVLYDKDA 342 >gi|261880130|ref|ZP_06006557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella bergensis DSM 17361] gi|270333185|gb|EFA43971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella bergensis DSM 17361] Length = 384 Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 115/394 (29%), Positives = 171/394 (43%), Gaps = 45/394 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD R+ V +SGGVDSSVV L G +++ K + C + +D+ A Sbjct: 7 KDKRIAVLLSGGVDSSVVVYELASHGLHPDCFYIRI---GPEEKEEWDCNSEEDMEMATA 63 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V V D + + + V +G TP P V CNR +KF + + G Sbjct: 64 VAKRFGCKLQVVDCHQEYWSQVTRYTMEKVRSGFTPNPDVMCNRLIKFG---AFDEKAGH 120 Query: 139 D--VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 D ++ATGHY ++ G R+ + D +DQ+ FL QL FP+G + Sbjct: 121 DYDLIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIEGWQLKKAIFPIGHYE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGR 255 K VR++A L A + DSQ ICF+ Y + V+R GDIV L G +G Sbjct: 176 KNEVREIAEREHLINARRKDSQGICFLGNIDYNEYVRRYLG--EQPGDIVELETGTKIGE 233 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 H+G +TIGQR+GLG++ G P FV+ D + + V E+ + +++WL Sbjct: 234 HSGHWFHTIGQRKGLGLSGG-PWFVIKKDVEHNVLYVSHGYDPETAYKKDFKIHDLHWLT 292 Query: 313 D------GLFEDAVVDGFKCFV----KIRSSQDPVPVFVQRN------------DDGVYV 350 + L E + ++ KIR + + P ++ N D Sbjct: 293 EEPTPPHHLSEASESQKPGSYIPITFKIRHTPEYHPGYLDLNAASSSDHTELTGDTATIH 352 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 +K GVA GQ CV Y D R G G I+ Sbjct: 353 SLDKIH-GVAPGQFCVIY--DEQHHRCFGSGEIT 383 >gi|150002999|ref|YP_001297743.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides vulgatus ATCC 8482] gi|254883647|ref|ZP_05256357.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 4_3_47FAA] gi|294775633|ref|ZP_06741142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides vulgatus PC510] gi|319642281|ref|ZP_07996940.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 3_1_40A] gi|205810256|sp|A6KXF7|MNMA1_BACV8 RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 gi|149931423|gb|ABR38121.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides vulgatus ATCC 8482] gi|254836440|gb|EET16749.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 4_3_47FAA] gi|294450575|gb|EFG19066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides vulgatus PC510] gi|317386137|gb|EFV67057.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 3_1_40A] Length = 354 Score = 119 bits (298), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 109/374 (29%), Positives = 168/374 (44%), Gaps = 28/374 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 M + +SGGVDS+VV LL GY D+ + + + + C A +D+ Sbjct: 1 MNIAALISGGVDSAVVVHLLCEQGYKPDLFYIKIGMDGDEDLT-----CTAEEDIELCTA 55 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 +S + D ++ + V+ G TP P V CN+ +KF L Sbjct: 56 TARKYGLSLNIIDLHRQYWDNVVAYAIDKVKRGLTPNPDVMCNKLIKFGCFEQEAGHL-Y 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D ATGHY + DGK + D +DQ+ FL Q+ L FPLG + K Sbjct: 115 DKTATGHYAS---ILEKDGKIW--LGTAQDPVKDQTDFLAQIDYLQISKLMFPLGGLMKN 169 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VRD+AR L A + DSQ ICF+ + Y + ++R EGDI+ + G+ +G H Sbjct: 170 EVRDIARIAKLPSAQRKDSQGICFLGKINYNEFLRRFLG--EKEGDIIEMETGKRIGTHK 227 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY-----LREINWLG 312 G +TIGQR+GLG+ G P FV+ D + + + V + + Y L + +++ Sbjct: 228 GYWFHTIGQRKGLGLG-GGPWFVIRKDIDENIIYV--SHGYDTDKQYGTDFALHDFHFIT 284 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + L++ A KIR + + + R D+ + G+A GQ V Y D Sbjct: 285 EDLWKGA--PSADVSFKIRHTDTFMKGILTREDNLFRIHSHVPLQGIAPGQFGVLY--DK 340 Query: 373 NEARVLGGGIISGS 386 N +G G I+ S Sbjct: 341 NAEICVGSGEITLS 354 >gi|126653986|ref|ZP_01725821.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Bacillus sp. B14905] gi|126589503|gb|EAZ83646.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Bacillus sp. B14905] Length = 137 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 58/133 (43%), Positives = 82/133 (61%), Gaps = 3/133 (2%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 ++P +RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ ++ + G C A +D D Sbjct: 5 RDPSQIRVVVGMSGGVDSSVAAYLLKQQGYEVIGIFMKNWDD---TDENGVCTATEDYDD 61 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 +VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 62 VIKVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHAMS 121 Query: 136 LGADVLATGHYIR 148 LGAD LATGHY R Sbjct: 122 LGADYLATGHYAR 134 >gi|237722379|ref|ZP_04552860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 2_2_4] gi|299146396|ref|ZP_07039464.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 3_1_23] gi|229448189|gb|EEO53980.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 2_2_4] gi|298516887|gb|EFI40768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 3_1_23] Length = 355 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 105/362 (29%), Positives = 162/362 (44%), Gaps = 26/362 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + +SGGVDSSVV LL GY TL C A +D+ + Sbjct: 1 MDIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMDGAEYMDCSAEEDIELSTATA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +S V D + + V G TP P V CN+ +KF +++G D Sbjct: 58 RKYGLSLEVVDLHQEYWENVAAYAIDKIRQGLTPNPDVMCNKLIKFG---CFEQRVGKDF 114 Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 ATGHY + G + + D +DQ+ FL Q+ L FP+G + K+ Sbjct: 115 DFTATGHYATTLQRNG-----KTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQ 169 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR++A + GL A + DSQ ICF+ + Y D V+R EG I+ L G+ LG H Sbjct: 170 EVREIANKAGLPSARRKDSQGICFLGKINYNDFVRRFLG--EKEGAIIELETGKKLGTHR 227 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDG 314 G +TIGQR+GLG++ G P FVV D + + V +E + + + +++ D Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVVKKDIEENTIYVSRGYGVETQYGNEFRMHDFHFITDN 286 Query: 315 LF--EDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + ++ +D KIR + D +Q + ++ + G+A GQ V Y + Sbjct: 287 PWKGQEKEID---ITFKIRHTPDFTKGKLIQEGEKQFHILSSEKLQGIAPGQFGVIYDEE 343 Query: 372 SN 373 + Sbjct: 344 TK 345 >gi|126642475|ref|YP_001085459.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter baumannii ATCC 17978] gi|126388359|gb|ABO12857.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter baumannii ATCC 17978] Length = 265 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 137/260 (52%), Gaps = 20/260 (7%) Query: 136 LGADVLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD +ATGHY R + G+ + R +D +DQ+YFL A +++ FP+G+ Sbjct: 3 LGADFIATGHYARRAETAYNSKGEAYAPLLRGLDNNKDQTYFLHAVHGREINKTLFPVGE 62 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K VR +A E+ L A K DS ICF+ + ++ D +K+ A G IV NG+ +G Sbjct: 63 IEKPEVRRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDNGKEVG 120 Query: 255 RHNGIINYTI-----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 H+G++ YT+ G+ A FV++ D ++R++VG ++ +++ Sbjct: 121 EHHGLMYYTLGQRGGIGLGGMKGASEGAWFVLHKDVANNRLVVGQGHDHPLMQSTQLWSE 180 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQ--DPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363 I+W+ ++ +G +C K R Q VF+ N + GV V+F++ + V GQ Sbjct: 181 AIDWVAGE--QNIPAEGLRCTAKTRYRQPDQACTVFIDENSEHGVRVEFDEPQRAVTPGQ 238 Query: 364 ACVFYTSDSNEARVLGGGII 383 + VFY+ + LGGG+I Sbjct: 239 SVVFYSDEV----CLGGGVI 254 >gi|293369466|ref|ZP_06616049.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides ovatus SD CMC 3f] gi|292635464|gb|EFF53973.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides ovatus SD CMC 3f] Length = 355 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 105/362 (29%), Positives = 162/362 (44%), Gaps = 26/362 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + +SGGVDSSVV LL GY TL C A +D+ + Sbjct: 1 MDIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMDGAEYMDCSAEEDIELSTATA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +S V D + + V G TP P V CN+ +KF +++G D Sbjct: 58 RKYGLSLEVVDLHQEYWENVAAYAIDKIRQGLTPNPDVMCNKLIKFG---CFEQRVGKDF 114 Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 ATGHY + G + + D +DQ+ FL Q+ L FP+G + K+ Sbjct: 115 DFTATGHYATTLQRNG-----KTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQ 169 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR++A + GL A + DSQ ICF+ + Y D V+R EG I+ L G+ LG H Sbjct: 170 EVREIANKAGLPSARRKDSQGICFLGKINYNDFVRRFLG--EKEGAIIELETGKKLGTHR 227 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDG 314 G +TIGQR+GLG++ G P FVV D + + V +E + + + +++ D Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVVKKDIEENTIYVSRGYGVETQYGNEFRMHDFHFITDN 286 Query: 315 LF--EDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + ++ +D KIR + D +Q + ++ + G+A GQ V Y + Sbjct: 287 PWKGQEKEID---ITFKIRHTPDFTKGKLIQEGEKQFHILSSEKLQGIAPGQFGVIYDEE 343 Query: 372 SN 373 + Sbjct: 344 AK 345 >gi|307107356|gb|EFN55599.1| hypothetical protein CHLNCDRAFT_35486 [Chlorella variabilis] Length = 418 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 119/385 (30%), Positives = 165/385 (42%), Gaps = 46/385 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK---GSCCAGQDVY- 74 + RV V +SGGVDS+V A LL+ GY+V+GV ++ ++ + + + G C A Sbjct: 12 RGRRVAVGISGGVDSAVAALLLQWQGYEVVGVFMRNWDEGEETGNQNCSGGCPAAHRGGM 71 Query: 75 -------DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 + C VF F + G TP P + CNR +KF Sbjct: 72 RGFRRGAPGQAACAAGPTGLGVFSE-----------FLAQCGRGLTPNPDLACNRHIKFD 120 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 LLS QLGA ++ATGHY R G G + R D +DQSYFL + L Sbjct: 121 ALLSFAGQLGAGLVATGHYARLAPGGGGGGGGGVSLLRGADRLKDQSYFLASVQPAALRR 180 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 + FP+G + K VR LA GL ADK S ICF+ + + + + A L G V Sbjct: 181 VLFPVGHLSKAEVRRLAAAAGLATADKRSSAGICFIGRRNFAAFLGQYLA--PLPGRYVD 238 Query: 248 L-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 + +G +LG + T GQR G+G A E ++ V D V V +L Sbjct: 239 VGSGAVLGTCPDLAAVTHGQRPGIGGAP-ERVYAVGKDVVERVVYVAQGRGHPALLCTTA 297 Query: 304 YLREINWLGDGLFEDAVVDGF-KCFVKIRSSQDPVP-----------VFVQRNDD---GV 348 LR +WL G G+ +C K R Q P P +Q D G Sbjct: 298 LLRTPHWLSAGHAAQLAAQGWLRCQYKARYGQQPRPSERLGFRPSAYCRLQPQDSRMLGS 357 Query: 349 Y--VDFEKSEVGVASGQACVFYTSD 371 Y V F++ V + QACV Y + Sbjct: 358 YLVVRFDEPGVAITPQQACVLYDGE 382 >gi|307103568|gb|EFN51827.1| hypothetical protein CHLNCDRAFT_139672 [Chlorella variabilis] Length = 417 Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 107/387 (27%), Positives = 176/387 (45%), Gaps = 26/387 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L + + V + +SGGVDSS+ LL G+ V LQ++ G+C + Sbjct: 44 LGCEPGAAPLTVALLLSGGVDSSLALHLLVAAGHRVTAFYLQIWFQEDFRNFWGACPWEE 103 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS---D 128 D+ R VC+ + V V E++ + V+ + G TP P V CN VKF + Sbjct: 104 DLEYCRAVCERLGVELQVVPLTEQYWDRVVAHCITEIRHGRTPNPDVLCNSRVKFGAFYE 163 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LS D +A+GHY +RL R+ P D +DQ+YFL +Q QL Sbjct: 164 HLSAQAIGTFDRIASGHY--ARLERPGTAAAARLALTP-DAIKDQTYFLAHLSQHQLARA 220 Query: 189 RFPLGDMKK-----ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243 FPLG + K SVR LA L + DSQ ICF+ + K+ + +++ G Sbjct: 221 LFPLGHLTKPQARGSSVRALAAAADLPNKARKDSQGICFLGKVKFNEFIRKHLG--EWPG 278 Query: 244 DIV-HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302 IV + +++G H+G +T+GQR+G+ ++ G P +V +++ V V R+ E + Sbjct: 279 PIVEEESNEVVGFHHGFWFHTVGQRKGIALS-GGPWYVTRKHPDTNVVYVS-RQYHESDK 336 Query: 303 I----YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVG 358 + +W G + + + C V+ + ++ +V ++ G Sbjct: 337 LRNSFSCHSFSWCGVARPDPSRL--LYCKVRHGPHMYACQLSLEPGGGAGHVVLGGNDQG 394 Query: 359 VASGQACVFYTSDSNEARVLGGGIISG 385 +A+GQ VFY + LG +I+G Sbjct: 395 LAAGQYAVFY----QDGACLGSAVIAG 417 >gi|313887221|ref|ZP_07820916.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Porphyromonas asaccharolytica PR426713P-I] gi|312923312|gb|EFR34126.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Porphyromonas asaccharolytica PR426713P-I] Length = 376 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 108/366 (29%), Positives = 165/366 (45%), Gaps = 31/366 (8%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS----CCAGQDV 73 P+D R+ + SGGVDSSV LL G+ LY R + + C A +D+ Sbjct: 10 PRDSRIALLASGGVDSSVAMHLLVEAGFRP-----DLYYIRIGMQDEDGGYLDCPAEEDI 64 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 + ++ V D + + + V+ + G TP P V CN+ +KF + Sbjct: 65 ELVTLLARRYDLHLEVIDLHKLYWDRVVTYTMDAVKRGLTPNPDVMCNKLIKFG---AFE 121 Query: 134 RQLGA--DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + G+ D +ATGHY R + + D +DQ+ FL +Q+ L FP Sbjct: 122 ERCGSSYDYIATGHYATIR----KTAEGLTFLGTSPDPVKDQTDFLAQIGFRQMERLLFP 177 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNG 250 +G + KE VR +A E L A + DSQ ICF+ Q Y D ++R GDI+ H G Sbjct: 178 IGHLPKEEVRRIALEAHLVNAQRKDSQGICFLGQINYNDFIERYLG--TQTGDIIDHETG 235 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG----PRESLEVHRIYLR 306 + +G H G +TIGQR+GLG++ G P +VV D + + P+ I Sbjct: 236 EKIGEHRGYWFHTIGQRKGLGLS-GGPWYVVAKDVEHNVLYASRGYDPKTQYGT-IIETE 293 Query: 307 EINWLG--DGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASG 362 E++WL L+ + D + KIR + D ++R G Y + G+A+G Sbjct: 294 EMHWLTVDPWLWTETPSDSPLEVTFKIRHTPDFTAGRLERLPSGGYQLVSSEPIQGIAAG 353 Query: 363 QACVFY 368 Q Y Sbjct: 354 QFATIY 359 >gi|288928497|ref|ZP_06422344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella sp. oral taxon 317 str. F0108] gi|288331331|gb|EFC69915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella sp. oral taxon 317 str. F0108] Length = 353 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 110/379 (29%), Positives = 164/379 (43%), Gaps = 47/379 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++ V +SGGVDSSVV R G +++ + C + +D+ A V Sbjct: 5 KIAVLLSGGVDSSVVVYEFNRLGLHPDCFYIKI---GPEETEEWDCASEEDLEMATAVAK 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 V D + + V AG TP P V CNR +KF R D++ Sbjct: 62 RFGCKLEVVDCHKEYWEQVTRYTMDKVKAGFTPNPDVMCNRLIKFG-AFHEKRGHEYDLI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY ++ DGK+ ++ P D +DQ+ FL QL FP+G +K VR Sbjct: 121 ATGHYAQTEWI---DGKKW-LVTSP-DPVKDQTDFLAQIYDWQLRKALFPIGHYQKGEVR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-ILGRHNGII 260 ++A L A + DSQ ICF+ + Y + ++R G+++ L + +G H G+ Sbjct: 176 EIAEREHLINAKRKDSQGICFLGKINYNEYIRRFLG--EKPGEVLELETEKKIGMHRGLW 233 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP--------RESLEVHRIYLREINWLG 312 +TIGQR GLG G P + V D + + V ++ +VH +L ++ Sbjct: 234 FHTIGQRHGLGFGGG-PWYAVKKDVERNVLFVSKGYEPATAYKKDFKVH--HLHQLT--- 287 Query: 313 DGLFEDAVVDGFKCFVKIRSSQ-------DPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 A +DG KIR + +P+P D G V E+ GVA GQ C Sbjct: 288 ------APLDGLDVTFKIRHTPEYHRAQLEPLP------DGGYIVHAEEPMQGVAPGQFC 335 Query: 366 VFYTSDSNEARVLGGGIIS 384 V Y D R G I+ Sbjct: 336 VIY--DKEHHRCFGSAEIA 352 >gi|224014905|ref|XP_002297114.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220968233|gb|EED86582.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 509 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 112/401 (27%), Positives = 169/401 (42%), Gaps = 42/401 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNS--RKASKRKGSCCAGQDVYDAR 77 R+VVAMSGGVDSS ++ + DG +VIG+ + +N+ + ++ DA+ Sbjct: 96 RIVVAMSGGVDSSYTTIIMYKICDGIEVIGLHMSNWNALDEDPDISNATNTREKEYTDAQ 155 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QL 136 V +++ + + + V PF S A P P CN +KF + Q+ Sbjct: 156 SVAQHLSIPLHRVSFASEYWIQVFEPFVESLAELTMPNPDYGCNTFIKFGAMKKYAMGQM 215 Query: 137 GADVLATGHY--IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 AD +ATGHY + R Y GD+ D +DQSYFL + ++ FPLG Sbjct: 216 NADFVATGHYAQLWHRGYTGDNDSSGVFP----DRSKDQSYFLSGVKGEAFRNVIFPLGH 271 Query: 195 MKK----ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN- 249 + K ++VRD+A + + A K DS ICF+ + + V + G V ++ Sbjct: 272 LAKSQTQQTVRDIAHQAAIPTASKRDSMGICFIGKRNFGQFVSQYLPEPPAPGTFVDVDT 331 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI- 308 G+I+G H G ++YTIGQ + A V S +Y E+ Sbjct: 332 GEIVGYHEGSMHYTIGQGAKISGASARYFVCGKGSTGDDGNTVFVCNSTHHPSLYTDELS 391 Query: 309 ------NWLGDGLFEDA---------VVDG--FKCFVKIRSSQD--PVPVFVQRNDDG-- 347 NW+G G D +V+G K + R Q V QR+ D Sbjct: 392 VDFDAFNWIGLGEKSDTDSFGHVPYPLVEGRPIKLLARTRHLQPLAQCTVSWQRSRDANS 451 Query: 348 ---VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385 + V FEK + Q Y + S+ LGGG I G Sbjct: 452 LGKLTVQFEKPMRAITPCQVVSLY-AGSDGLICLGGGPIKG 491 >gi|330722024|gb|EGG99950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma proteobacterium IMCC2047] Length = 222 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 76/227 (33%), Positives = 120/227 (52%), Gaps = 19/227 (8%) Query: 167 MDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQG 226 MD +DQSYFL A +QQL FP+G+++K VR++A + L +K DS ICF+ + Sbjct: 1 MDKNKDQSYFLHAVPEQQLAKTFFPIGELEKPRVREIAEQHDLVTHNKKDSTGICFIGER 60 Query: 227 KYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGE-----PLFVV 281 ++ D +K+ A GDIV + +++G+H G++ +TIGQR+GLG+ + P +V Sbjct: 61 RFRDFLKQYIP--AQPGDIVTPDNEVIGKHQGLMYHTIGQRQGLGIGGMQGKDESPWYVA 118 Query: 282 --YLDKNSSRVIVGPRE-SLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP 338 YLD N + G +L + ++W+ F+C KIR Q Sbjct: 119 DKYLDTNQLLAVQGKNHPALFAPSLLAEGVSWING----SPPAKQFRCTAKIRYRQSDQR 174 Query: 339 VFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 V D+G +V F++ + VA GQ+ VFY + LGGG+I+ Sbjct: 175 CEVVVKDNGHCHVIFDEPQRAVAPGQSVVFYIDEV----CLGGGVIT 217 >gi|47215507|emb|CAG01169.1| unnamed protein product [Tetraodon nigroviridis] Length = 387 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 106/394 (26%), Positives = 163/394 (41%), Gaps = 64/394 (16%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV AMSGGVDSSV A LLKR GY+V GV ++ ++ +G C A +D DA RVC Sbjct: 6 HVVCAMSGGVDSSVAALLLKRRGYNVTGVFMKNWD---LLDERGVCAAEKDCEDAYRVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ + Y + + + V + Y G TP P + CN+ +KF+ + Sbjct: 63 ILDIPFHQVSYVKEYWHKVFSDLLNEYEKGRTPNPDILCNKHIKFNHFYK-------HAI 115 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 T + +RLY G D +DQ++FL +Q+ L FPL + K V+ Sbjct: 116 NT---LSARLYKGADHL------------KDQTFFLSQISQEALRQTIFPLAGLTKSFVK 160 Query: 202 DLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN-- 257 +A E G + + +S ICF+ + + + + + G+ V + +G + G H Sbjct: 161 KIAAEAGFHHVLKRKESMGICFIGERNFENFI--LEYLEPKPGNFVSVEDGTVKGAHKGR 218 Query: 258 -----------------------GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP 294 G T+GQR +G + FVV D + V+V P Sbjct: 219 RVLCVSSDSCVFTFTHAFVCVPPGWFTLTLGQRARIG-GQKDAWFVVDKDIATGDVLVAP 277 Query: 295 ---RESLEVHRIYLREINWL-GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VY 349 +L + +W+ GD E A +C + P V N DG V+ Sbjct: 278 TTNHPALYRDTVRTARFHWIAGDPPVELARTQMMECHFRFIHQMPLTPCTVTLNLDGSVW 337 Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 + + GQ V Y D LG G I Sbjct: 338 ISLSHPVRALTPGQYAVLYKGDE----CLGSGKI 367 >gi|237715861|ref|ZP_04546342.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. D1] gi|262407475|ref|ZP_06084023.1| tRNA methyl transferase [Bacteroides sp. 2_1_22] gi|294646866|ref|ZP_06724487.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides ovatus SD CC 2a] gi|294808901|ref|ZP_06767630.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides xylanisolvens SD CC 1b] gi|229443508|gb|EEO49299.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. D1] gi|262354283|gb|EEZ03375.1| tRNA methyl transferase [Bacteroides sp. 2_1_22] gi|292637811|gb|EFF56208.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides ovatus SD CC 2a] gi|294443943|gb|EFG12681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides xylanisolvens SD CC 1b] Length = 355 Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 107/360 (29%), Positives = 162/360 (45%), Gaps = 26/360 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + +SGGVDSSVV LL GY TL C A +D+ + Sbjct: 1 MEIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMDGAEYMDCSAEEDIELSTATA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +S V D + + V G TP P V CN+ +KF +++G D Sbjct: 58 RKYGLSLEVVDLHQEYWENVAAYAIDKIRQGLTPNPDVMCNKLIKFG---CFEQRVGKDF 114 Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 ATGHY + + DGK + D +DQ+ FL Q+ L FP+G + K+ Sbjct: 115 DFTATGHYATT---LQRDGKTW--LGTAKDPVKDQTDFLAQIDYLQVSKLIFPIGGLMKQ 169 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR++A GL A + DSQ ICF+ + Y D V+R EG IV L G+ +G H Sbjct: 170 EVREIANRAGLPSAKRKDSQGICFLGKINYNDFVRRFLG--EKEGAIVELETGKKVGTHR 227 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDG 314 G +TIGQR+GLG++ G P FVV D + + V +E + + + +++ D Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVVKKDIEENTIYVSRGYGVETQYGNEFRMHDFHFITDN 286 Query: 315 LF--EDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + ++ VD KIR + + +Q + ++ + G+A GQ V Y + Sbjct: 287 PWKGQEKEVD---IIFKIRHTPEFTKGKLIQEGEKLFHILSSEKLQGIAPGQFGVIYDEE 343 >gi|332176817|gb|AEE12507.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Porphyromonas asaccharolytica DSM 20707] Length = 379 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 108/366 (29%), Positives = 165/366 (45%), Gaps = 31/366 (8%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS----CCAGQDV 73 P+D R+ + SGGVDSSV LL G+ LY R + + C A +D+ Sbjct: 13 PRDSRIALLASGGVDSSVAMHLLVEAGFRP-----DLYYIRIGMQDEDGGYLDCPAEEDI 67 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 + ++ V D + + + V+ + G TP P V CN+ +KF + Sbjct: 68 ELVTLLARRYDLHLEVIDLHKLYWDRVVAYTMDAVRRGLTPNPDVMCNKLIKFG---AFE 124 Query: 134 RQLGA--DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + G+ D +ATGHY R + + D +DQ+ FL +Q+ L FP Sbjct: 125 ERSGSSYDYIATGHYATIR----KTAEGLTFLGTSPDPVKDQTDFLAQIGFRQMERLLFP 180 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNG 250 +G + KE VR +A E L A + DSQ ICF+ Q Y D ++R GDI+ H G Sbjct: 181 IGHLPKEEVRRIALEAHLVNAQRKDSQGICFLGQINYNDFIERYLG--TQTGDIIDHETG 238 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG----PRESLEVHRIYLR 306 + +G H G +TIGQR+GLG++ G P +VV D + + P+ I Sbjct: 239 EKIGEHRGYWFHTIGQRKGLGLS-GGPWYVVAKDVEHNVLYASRGYDPKTQYGT-IIETE 296 Query: 307 EINWLG--DGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV-GVASG 362 E++WL L+ + D + KIR + D ++R G Y + G+A+G Sbjct: 297 EMHWLTVDPWLWTETPSDSPLEVTFKIRHTPDFTAGRLERLPSGGYQLVSSEPIQGIAAG 356 Query: 363 QACVFY 368 Q Y Sbjct: 357 QFATIY 362 >gi|153855259|ref|ZP_01996425.1| hypothetical protein DORLON_02439 [Dorea longicatena DSM 13814] gi|149752258|gb|EDM62189.1| hypothetical protein DORLON_02439 [Dorea longicatena DSM 13814] Length = 191 Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 66/199 (33%), Positives = 111/199 (55%), Gaps = 9/199 (4%) Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 P+G+ K+ +R +A E+GL +A K DSQDICFV G Y ++ + G+ V + Sbjct: 1 MPVGEYTKDQIRAMADEIGLLVAHKPDSQDICFVSDGDYASYIEENSDAKITPGNFVLSD 60 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 G ++G+H GII+YT+GQR+GLG+++G P+FV+ + ++ V+VG E + ++N Sbjct: 61 GTVVGKHKGIIHYTVGQRKGLGLSLGHPVFVLEIRPETNEVVVGSNEESMSRYVRADQVN 120 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFY 368 ++ ED + + + + KIR + V++ +D + FE+ + + GQA V Y Sbjct: 121 FM---TVED-LTEPKRVWAKIRYNHRGAWCTVEKTGEDEILCTFEEPQRAITPGQAVVLY 176 Query: 369 TSDSNEARVLGGGIISGSK 387 + VLGGG I K Sbjct: 177 DGE----YVLGGGTIIADK 191 >gi|285921099|gb|ADC39865.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921113|gb|ADC39872.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921115|gb|ADC39873.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921119|gb|ADC39875.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921121|gb|ADC39876.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921123|gb|ADC39877.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921127|gb|ADC39879.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921129|gb|ADC39880.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921131|gb|ADC39881.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921133|gb|ADC39882.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921161|gb|ADC39896.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] Length = 188 Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 100/187 (53%), Gaps = 19/187 (10%) Query: 40 LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA 99 LK G++VIG ++L+ + +++ +V + + + ++V D +E F+N Sbjct: 3 LKNAGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVANFLQIPYHVLDLQEDFKNK 54 Query: 100 VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKR 159 V +PF +Y G+TP PC CNR +K LL + LG + LATGHY R Sbjct: 55 VYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHYARL---------E 105 Query: 160 RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR--EMGLDIADKSDS 217 ++ +D +DQSYFL + ++ L L FPLG+MKKE V+ A E+ A + +S Sbjct: 106 NNLIRTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQKES 165 Query: 218 QDICFVQ 224 +ICFV+ Sbjct: 166 SEICFVE 172 >gi|298483766|ref|ZP_07001939.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. D22] gi|295087550|emb|CBK69073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides xylanisolvens XB1A] gi|298270060|gb|EFI11648.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. D22] Length = 355 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 107/360 (29%), Positives = 162/360 (45%), Gaps = 26/360 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + +SGGVDSSVV LL GY TL C A +D+ + Sbjct: 1 MEIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMDGAEYMDCSAEEDIELSTATA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +S V D + + V G TP P V CN+ +KF +++G D Sbjct: 58 RKYGLSLEVVDLHQEYWENVAAYAIDKIRQGLTPNPDVMCNKLIKFG---CFEQRVGKDF 114 Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 ATGHY + + DGK + D +DQ+ FL Q+ L FP+G + K+ Sbjct: 115 DFTATGHYATT---LQCDGKT--WLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQ 169 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR++A GL A + DSQ ICF+ + Y D V+R EG IV L G+ +G H Sbjct: 170 EVREIANRAGLPSAKRKDSQGICFLGKINYNDFVRRFLG--EKEGAIVELETGKKVGTHR 227 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDG 314 G +TIGQR+GLG++ G P FVV D + + V +E + + + +++ D Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVVKKDIEENTIYVSRGYGVETQYGNEFRMHDFHFITDN 286 Query: 315 LF--EDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + ++ VD KIR + + +Q + ++ + G+A GQ V Y + Sbjct: 287 PWKGQEKEVD---ITFKIRHTPEFTKGKLIQEGEKQFHILSSEKLQGIAPGQFGVIYDEE 343 >gi|255593058|ref|XP_002535783.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ricinus communis] gi|223521982|gb|EEF26602.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ricinus communis] Length = 156 Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 67/157 (42%), Positives = 88/157 (56%), Gaps = 7/157 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V Sbjct: 7 IRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDVAAVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD Sbjct: 64 DQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177 +ATGHY + V D M R D +DQ+YFL Sbjct: 124 VATGHYAQ----VKRDENGTVHMLRGADNGKDQTYFL 156 >gi|285921173|gb|ADC39902.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] Length = 188 Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 101/187 (54%), Gaps = 19/187 (10%) Query: 40 LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA 99 LK G++VIG ++L+ + +++ +V + + + +++ D +E F+N Sbjct: 3 LKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVANFLQIPYHILDLQEDFKNK 54 Query: 100 VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKR 159 V +PF ++Y G+TP PC CNR +K LL + LG + LATGHY R Sbjct: 55 VYMPFVNTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHYARL---------E 105 Query: 160 RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR--EMGLDIADKSDS 217 ++ +D +DQSYFL + ++ L L FPLG+MKKE V+ A E+ A + +S Sbjct: 106 NNLIRTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQKES 165 Query: 218 QDICFVQ 224 +ICFV+ Sbjct: 166 SEICFVE 172 >gi|285921101|gb|ADC39866.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921107|gb|ADC39869.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921117|gb|ADC39874.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921165|gb|ADC39898.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921187|gb|ADC39909.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921191|gb|ADC39911.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921197|gb|ADC39914.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921235|gb|ADC39933.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] Length = 188 Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 100/187 (53%), Gaps = 19/187 (10%) Query: 40 LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA 99 LK G++VIG ++L+ + +++ +V + + + +++ D +E F+N Sbjct: 3 LKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVANFLQIPYHILDLQEDFKNK 54 Query: 100 VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKR 159 V +PF +Y G+TP PC CNR +K LL + LG + LATGHY R Sbjct: 55 VYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHYARL---------E 105 Query: 160 RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR--EMGLDIADKSDS 217 ++ +D +DQSYFL + ++ L L FPLG+MKKE V+ A E+ A + +S Sbjct: 106 NNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQKES 165 Query: 218 QDICFVQ 224 +ICFV+ Sbjct: 166 SEICFVE 172 >gi|285921219|gb|ADC39925.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] Length = 188 Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 100/187 (53%), Gaps = 19/187 (10%) Query: 40 LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA 99 LK G++VIG ++L+ + +++ +V + + V +++ D +E F+N Sbjct: 3 LKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVANFLQVPYHILDLQEDFKNK 54 Query: 100 VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKR 159 V +PF +Y G+TP PC CNR +K LL + LG + LATGHY R Sbjct: 55 VYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHYARL---------E 105 Query: 160 RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR--EMGLDIADKSDS 217 ++ +D +DQSYFL + ++ L L FPLG+MKKE V+ A E+ A + +S Sbjct: 106 NNLIRTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQKES 165 Query: 218 QDICFVQ 224 +ICFV+ Sbjct: 166 SEICFVE 172 >gi|285921077|gb|ADC39854.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921111|gb|ADC39871.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921125|gb|ADC39878.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921135|gb|ADC39883.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921141|gb|ADC39886.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921209|gb|ADC39920.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921211|gb|ADC39921.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] Length = 188 Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 63/187 (33%), Positives = 100/187 (53%), Gaps = 19/187 (10%) Query: 40 LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA 99 LK G++VIG ++L+ + +++ +V + + + ++V D +E F+N Sbjct: 3 LKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVANFLQIPYHVLDLQEDFKNK 54 Query: 100 VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKR 159 V +PF +Y G+TP PC CNR +K LL + LG + LATGHY R Sbjct: 55 VYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHYARL---------E 105 Query: 160 RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR--EMGLDIADKSDS 217 ++ +D +DQSYFL + ++ L L FPLG+MKKE V+ A E+ A + +S Sbjct: 106 NNLIRTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQKES 165 Query: 218 QDICFVQ 224 +ICFV+ Sbjct: 166 SEICFVE 172 >gi|260171069|ref|ZP_05757481.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides sp. D2] gi|315919389|ref|ZP_07915629.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693264|gb|EFS30099.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 355 Score = 115 bits (289), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 104/362 (28%), Positives = 161/362 (44%), Gaps = 26/362 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + +SGGVDSSVV LL GY TL C A +D+ + Sbjct: 1 MDIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMDGAEYMDCSAEEDIELSTATA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +S V D + + V G TP P V CN+ +KF +++G D Sbjct: 58 RKYGLSLEVVDLHQEYWENVAAYAIDKIRQGLTPNPDVMCNKLIKFG---CFEQRVGKDF 114 Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 ATGHY + G + + D +DQ+ FL Q+ L FP+G + K+ Sbjct: 115 DFTATGHYATTLQRNG-----KTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKQ 169 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-ILGRHN 257 VR++A + GL A + DSQ ICF+ + Y D V+R EG I+ L + LG H Sbjct: 170 EVREIANKAGLPSARRKDSQGICFLGKINYNDFVRRFLG--EKEGAIIELETEKKLGTHR 227 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDG 314 G +TIGQR+GLG++ G P FVV D + + V +E + + + +++ D Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVVKKDMEENTIYVSRGYGVETQYGNEFRMHDFHFITDN 286 Query: 315 LF--EDAVVDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + ++ +D KIR + D +Q + ++ + G+A GQ V Y + Sbjct: 287 PWKGQEKEID---ITFKIRHTPDFTKGKLIQEGEKQFHILSSEKLQGIAPGQFGVIYDEE 343 Query: 372 SN 373 + Sbjct: 344 AK 345 >gi|228470778|ref|ZP_04055626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Porphyromonas uenonis 60-3] gi|228307451|gb|EEK16456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Porphyromonas uenonis 60-3] Length = 376 Score = 115 bits (289), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 113/371 (30%), Positives = 169/371 (45%), Gaps = 41/371 (11%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGS---CCAGQDV 73 P+D R+ + SGGVDSSV LL G+ LY R + GS C A +D+ Sbjct: 10 PRDSRIALLASGGVDSSVAMHLLVEAGFRP-----DLYYIRIGMQDEDGSFLDCPAEEDI 64 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 + ++ + D + + + V+ + G TP P V CN+ +KF + Sbjct: 65 ELVTLLARRYDLHLEIVDLHQVYWDRVVAYTMDAVRRGLTPNPDVMCNKLIKFG---AFE 121 Query: 134 RQLGA--DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + GA D +ATGHY R +DG + D +DQ+ FL +Q+ L FP Sbjct: 122 ERCGASYDYIATGHYATIR--QTEDG--LTFLGTSPDPVKDQTDFLAQIGFRQMERLLFP 177 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNG 250 +G + KE VR +A E L A + DSQ ICF+ Q Y D ++R GDI+ H G Sbjct: 178 IGHLPKEEVRRIALEAHLVNAQRKDSQGICFLGQIDYNDFIERYLG--TQTGDIIDHETG 235 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR------------ESL 298 + +G H G +TIGQR+GLG++ G P +VV D + V+ R E+ Sbjct: 236 EKIGEHRGYWFHTIGQRKGLGLS-GGPWYVVAKDVEHN-VLYASRGYDPKTQYGTIIETE 293 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV- 357 E+H +L WL D+ ++ KIR + D ++ G Y + Sbjct: 294 EMH--WLTTDPWLWTKTPSDSPLE---VTFKIRHTPDFTAGRLEHLPSGGYQLVSSVPIQ 348 Query: 358 GVASGQACVFY 368 G+A+GQ Y Sbjct: 349 GIAAGQFATIY 359 >gi|237801139|ref|ZP_04589600.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023996|gb|EGI04053.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. oryzae str. 1_6] Length = 155 Score = 115 bits (289), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 63/158 (39%), Positives = 88/158 (55%), Gaps = 8/158 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VCD Sbjct: 3 RVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCD 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + + ++ + + V F Y AG TP P + CNR +KF L LGAD++ Sbjct: 60 KIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLI 119 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 ATGHY+R R D R + + +D +DQSYFL A Sbjct: 120 ATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHA 152 >gi|170036350|ref|XP_001846027.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Culex quinquefasciatus] gi|167878999|gb|EDS42382.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Culex quinquefasciatus] Length = 358 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 94/333 (28%), Positives = 163/333 (48%), Gaps = 24/333 (7%) Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 G C QD DA+++C +++ ++ + + V F Y+AG TP P + CNR + Sbjct: 26 GYCSGEQDWLDAQKLCRQLDIPLEQVNFVKDYWLEVFGSFLKDYSAGITPNPDILCNRHI 85 Query: 125 KFSDLLSVTRQ-LGADVLATGHYIRSRL--YVGDDGKRRRI-MCRPMDLERDQSYFLFAT 180 KF+ R+ +GAD +ATGHY RS ++ + ++ R+ + +D +DQ++FL Sbjct: 86 KFNLFYKHARERMGADAIATGHYCRSSFGPFLENYTEQDRVRLLTGVDEIKDQTFFLSQI 145 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGI 239 + L FP+G M K V+ LA E+GL+ A K +S ICFV + + D + G Sbjct: 146 GTEALRRTMFPIGGMMKREVKALAAEVGLEAFAKKKESMGICFVGKRSFQDFI-----GE 200 Query: 240 ALE----GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLD--KNSSRVIVG 293 +E G + G+++G H G+ ++T+GQ+ +G + +P FV D +N ++ G Sbjct: 201 YIESKPGGFVDFETGRVVGEHKGLHHWTVGQKAKIGGCL-KPYFVFRKDVERNVIYLVAG 259 Query: 294 PRES-LEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRND-DGVYV 350 L ++ + WL +D V G +C + + ++ V V D V+V Sbjct: 260 TDHPLLRTDMVFAEDPVWLNRP--DDWVRGGVLRCQFRFQHTKPLVGCSVIETDGHKVFV 317 Query: 351 DFEKSEVGVASGQACVFYTSDS--NEARVLGGG 381 ++ + GQ VFY ++ AR+ G Sbjct: 318 KLDEPLRAITPGQYAVFYRNEECFGSARITKPG 350 >gi|285921079|gb|ADC39855.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921081|gb|ADC39856.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921083|gb|ADC39857.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921085|gb|ADC39858.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921087|gb|ADC39859.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921089|gb|ADC39860.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921091|gb|ADC39861.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921093|gb|ADC39862.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921095|gb|ADC39863.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921097|gb|ADC39864.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921103|gb|ADC39867.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921105|gb|ADC39868.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921109|gb|ADC39870.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921137|gb|ADC39884.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921139|gb|ADC39885.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921143|gb|ADC39887.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921145|gb|ADC39888.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921147|gb|ADC39889.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921149|gb|ADC39890.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921151|gb|ADC39891.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921153|gb|ADC39892.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921155|gb|ADC39893.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921157|gb|ADC39894.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921159|gb|ADC39895.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921163|gb|ADC39897.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921167|gb|ADC39899.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921171|gb|ADC39901.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921175|gb|ADC39903.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921177|gb|ADC39904.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921179|gb|ADC39905.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921185|gb|ADC39908.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921189|gb|ADC39910.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921195|gb|ADC39913.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921199|gb|ADC39915.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921201|gb|ADC39916.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921203|gb|ADC39917.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921205|gb|ADC39918.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921207|gb|ADC39919.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921213|gb|ADC39922.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921215|gb|ADC39923.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921217|gb|ADC39924.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921221|gb|ADC39926.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921223|gb|ADC39927.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921225|gb|ADC39928.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921227|gb|ADC39929.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921229|gb|ADC39930.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921231|gb|ADC39931.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921233|gb|ADC39932.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921237|gb|ADC39934.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921239|gb|ADC39935.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] gi|285921241|gb|ADC39936.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] Length = 188 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 100/187 (53%), Gaps = 19/187 (10%) Query: 40 LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA 99 LK G++VIG ++L+ + +++ +V + + + +++ D +E F+N Sbjct: 3 LKNLGHEVIGCYMKLHGKPNYHE--------ENIKKVEKVANFLQIPYHILDLQEDFKNK 54 Query: 100 VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKR 159 V +PF +Y G+TP PC CNR +K LL + LG + LATGHY R Sbjct: 55 VYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHYARL---------E 105 Query: 160 RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR--EMGLDIADKSDS 217 ++ +D +DQSYFL + ++ L L FPLG+MKKE V+ A E+ A + +S Sbjct: 106 NNLIRTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQKES 165 Query: 218 QDICFVQ 224 +ICFV+ Sbjct: 166 SEICFVE 172 >gi|301167154|emb|CBW26733.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteriovorax marinus SJ] Length = 411 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 98/381 (25%), Positives = 188/381 (49%), Gaps = 27/381 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++V M GGV+S+V A LLK+ G +V+G+ + + + S + S + + + ++ Sbjct: 10 KQQTILVGMDGGVESTVAAYLLKKQGLNVVGLGVVFH---EYSYKSLSVWTPKSLENIKK 66 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 +C+ + + Y + F + V+ P S+ A E P + N+ + L+ + +GA Sbjct: 67 ICNQLEIPFYGTNINSLFYSRVLEPVVSTRLAAEQFEPVIAWNKIL-IETLIEKAKVVGA 125 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGH +++++ ++ P D+ D++Y L +Q +L L FPL ++K+ Sbjct: 126 TGIATGH--KAKVFKNQKSGVYSLLV-PADVANDETYGLSRLSQDELSKLIFPLAEIKQN 182 Query: 199 SVRDLAREMGL-----DIADKSDSQDICFVQQGKYFDVVKRINA-GIALEGDIV-HLNGQ 251 + +A +G+ DI +K + F + + +VV+R +A + EG I+ + +G Sbjct: 183 EILKIANLLGITFAKDDIENKKRRKKSLF--RTDFIEVVERFSAPTLRKEGRILSYRDGT 240 Query: 252 ILGRHNGIINYTIGQRRGL----GVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 + H+G+ Y + Q G+ G A+ + L V+ ++ VIV E H + R Sbjct: 241 TICEHDGVHLYHLNQ-EGIVGKKGFAVDKTLSVIRINPRQQDVIVDNIE--RYHYTHCRL 297 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVAS-GQAC 365 + + D + + +CFV+ +SS +P + +N+ V V+FE + GV G Sbjct: 298 MRFSHDPAMD--LSKPLQCFVQTKSSGAKLPCKLYFKNNRAVVVEFEDEQEGVCPRGGYL 355 Query: 366 VFYTSDSNEARVLGGGIISGS 386 VFY + A V+G G++ S Sbjct: 356 VFYNRRAIGATVIGSGVVRSS 376 >gi|189462149|ref|ZP_03010934.1| hypothetical protein BACCOP_02831 [Bacteroides coprocola DSM 17136] gi|189431122|gb|EDV00107.1| hypothetical protein BACCOP_02831 [Bacteroides coprocola DSM 17136] Length = 378 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 86/291 (29%), Positives = 137/291 (47%), Gaps = 19/291 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 M + +SGGVDS+V LL GY D+ + + + + + SC A +D+ A Sbjct: 26 MNIAALISGGVDSAVAVHLLCEQGYKPDLFYIKIGM-----DTDNELSCTAEEDIELATA 80 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + D ++ + + V+ G TP P V CN+ +KF Sbjct: 81 TARRYGLQLEIIDLQKEYWDQVVAYTIEKVRNGFTPNPDVMCNKLIKFG-CFEQKAGYAY 139 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + G + + D +DQ+ FL Q+ L FPLG K+ Sbjct: 140 DKIATGHYASTCELNG-----KTWLATAKDAIKDQTDFLAQINYLQVSKLLFPLGGYMKK 194 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 +R +A + L A + DSQ ICF+ + Y D ++R +G I+ L +G+ +G+H Sbjct: 195 EIRHIAAQAKLPSAQRKDSQGICFLGKINYNDFIRRFLG--ERQGSIIELESGKEIGKHR 252 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 G +TIGQR+GLG++ G P FVV DK++ I+ + + Y E Sbjct: 253 GFWFHTIGQRKGLGLS-GGPWFVV--DKDTENNILYVSHGYDTEQQYSNEF 300 >gi|285921183|gb|ADC39907.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Campylobacter coli] Length = 188 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 62/187 (33%), Positives = 99/187 (52%), Gaps = 19/187 (10%) Query: 40 LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNA 99 LK G+ VIG ++L+ + +++ +V + + + +++ D +E F+N Sbjct: 3 LKNLGHKVIGCYMKLHGKPNYHE--------ENIKKVEKVANFLQIPYHILDLQEDFKNK 54 Query: 100 VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKR 159 V +PF +Y G+TP PC CNR +K LL + LG + LATGHY R Sbjct: 55 VYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEKLATGHYARL---------E 105 Query: 160 RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR--EMGLDIADKSDS 217 ++ +D +DQSYFL + ++ L L FPLG+MKKE V+ A E+ A + +S Sbjct: 106 NNLIRTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQKES 165 Query: 218 QDICFVQ 224 +ICFV+ Sbjct: 166 SEICFVE 172 >gi|149239668|ref|XP_001525710.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] gi|146451203|gb|EDK45459.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL YB-4239] Length = 509 Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 84/292 (28%), Positives = 128/292 (43%), Gaps = 39/292 (13%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D R+++AMS GVDSS+ AAL +V G+ + A+ R+ S C +D D + V Sbjct: 88 DDRIIIAMSSGVDSSLCAALYASKYKNVHGIYM-------ANWRQSSQCTERDWRDVQTV 140 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR----- 134 C +++S + E + V P YA G TP P V CNR VKF L + Sbjct: 141 CKQLDISCERINLELEYWQNVFQPMIDGYAKGLTPNPDVGCNRYVKFGRLCEIMEERYGN 200 Query: 135 QLGADVLATGHYIRSRLYVGDD--------------------------GKRRRIMCRPMD 168 + G L TGHY R + + + R + Sbjct: 201 EKGKWWLVTGHYARVMKKIVKEPSLAHENVDTSIVKQTPTPTNDTDFKANEEYHLLRGLS 260 Query: 169 LERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKY 228 +DQSY+L + L L PLG K R LA+ L + K D Q +CFV+ + Sbjct: 261 TRKDQSYYLSTISPLILPHLLLPLGHQLKSQTRQLAQNYKLHTSQKPDLQGLCFVEPSNH 320 Query: 229 FDVVKRINAGIALE-GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLF 279 + + I G+IV +G++ G+H G+ + TIGQ+ + + G+P + Sbjct: 321 SNFRDFLAEYIEPNPGNIVTTDGKVWGKHKGLWHATIGQKSSVLMPQGDPQY 372 >gi|260206355|ref|ZP_05773846.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis K85] Length = 268 Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 87/250 (34%), Positives = 121/250 (48%), Gaps = 21/250 (8%) Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R G R R R +D ++DQSY L T QQL FP+GD K +R Sbjct: 25 TGHYARL------SGGRLR---RAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKRQIRA 75 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHNGIIN 261 A GL +A+K DS DICF+ G + +RI G +V +G +L H+G+ Sbjct: 76 EAARRGLAVANKPDSHDICFIPSGNTRAFLGERIG---VRRGVVVDADGVVLASHDGVHG 132 Query: 262 YTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 +TIGQRRGLG+A G P +V +D +++ V VG L+V + R + G Sbjct: 133 FTIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTA-GAAP 191 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 VD C V++R+ + V + D ++V GVA GQ V Y D V Sbjct: 192 SGPVD---CVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQTLVLYRPDPAGDEV 248 Query: 378 LGGGIISGSK 387 LG I+G+ Sbjct: 249 LGSATIAGAS 258 >gi|330995326|ref|ZP_08319236.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paraprevotella xylaniphila YIT 11841] gi|329575821|gb|EGG57345.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paraprevotella xylaniphila YIT 11841] Length = 352 Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 113/363 (31%), Positives = 169/363 (46%), Gaps = 31/363 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDARRV 79 MR+ V +SGGVDS+V + GY L+ + + +G SC A +D+ + Sbjct: 1 MRIAVLISGGVDSAVAVHRICEMGYKP-----DLFYIKIGMEGEGLSCTAEEDIELSTAT 55 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA- 138 + V D ++++ V+ G TP P V CN+ +KF +++G Sbjct: 56 ARRYGLHLEVVDLQKQYWELVVGYAMERARRGLTPNPDVMCNKLIKFG---CFEQEVGHR 112 Query: 139 -DVLATGHY--IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 D +ATGHY +R R DGK R D +DQ+ FL Q+ L FP+GD+ Sbjct: 113 YDKIATGHYATVRER-----DGKIWLGTAR--DPVKDQTDFLAQIDSLQVAKLMFPVGDL 165 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254 KE VR +A L A + DSQ ICF+ Q Y D V+R EG +V + G+ +G Sbjct: 166 MKEEVRRIAETQRLPSAKRRDSQGICFLGQIDYNDFVRRFLG--EREGAVVEIETGRRIG 223 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLD--KNSSRVIVGPRESLEV-HRIYLREINWL 311 H G +TIGQR+GLG+ G P FVV D +N V G L+ H L++ +++ Sbjct: 224 THKGYWFHTIGQRKGLGLG-GGPWFVVKKDVEQNILYVSHGYDTLLQYGHSFNLKDFHFI 282 Query: 312 GDGLFEDAV-VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 + DA VD K R + + R G ++ + G+A GQ V Y + Sbjct: 283 TGNPWGDAPEVD---VTFKTRHQPHFMKGRLYRAGHGYRLESPERIQGIAPGQFGVVYDA 339 Query: 371 DSN 373 + Sbjct: 340 AAE 342 >gi|153842966|ref|ZP_01993539.1| 3-oxoacyl-[acyl-carrier-protein] synthase 1 [Vibrio parahaemolyticus AQ3810] gi|149745344|gb|EDM56595.1| 3-oxoacyl-[acyl-carrier-protein] synthase 1 [Vibrio parahaemolyticus AQ3810] Length = 331 Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 58/158 (36%), Positives = 95/158 (60%), Gaps = 6/158 (3%) Query: 116 PCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQS 174 P + CN+ +KF L + L AD +A GHY+R ++G++ + M R +D +DQS Sbjct: 2 PDILCNKEIKFKAFLEFADEVLEADYIAMGHYVRRSF--PENGEKPQ-MLRGLDSNKDQS 58 Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234 YFL+ + +Q+ FP+GD++K VR +A E GL A K DS ICF+ + K+ + + R Sbjct: 59 YFLYTLSHEQVARSLFPVGDLEKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTEFLGR 118 Query: 235 INAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV 272 A G+I G+++G+H G++ +T+GQR+GL + Sbjct: 119 YLP--AQPGNIETPEGEVIGQHQGLMYHTLGQRKGLHI 154 >gi|289575733|ref|ZP_06455960.1| LOW QUALITY PROTEIN: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis K85] gi|289540164|gb|EFD44742.1| LOW QUALITY PROTEIN: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis K85] Length = 367 Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 87/249 (34%), Positives = 121/249 (48%), Gaps = 21/249 (8%) Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R G R R R +D ++DQSY L T QQL FP+GD K +R Sbjct: 124 TGHYARL------SGGRLR---RAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKRQIRA 174 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHNGIIN 261 A GL +A+K DS DICF+ G + +RI G +V +G +L H+G+ Sbjct: 175 EAARRGLAVANKPDSHDICFIPSGNTRAFLGERIG---VRRGVVVDADGVVLASHDGVHG 231 Query: 262 YTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 +TIGQRRGLG+A G P +V +D +++ V VG L+V + R + G Sbjct: 232 FTIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTA-GAAP 290 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 VD C V++R+ + V + D ++V GVA GQ V Y D V Sbjct: 291 SGPVD---CVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQTLVLYRPDPAGDEV 347 Query: 378 LGGGIISGS 386 LG I+G+ Sbjct: 348 LGSATIAGA 356 >gi|224026934|ref|ZP_03645300.1| hypothetical protein BACCOPRO_03693 [Bacteroides coprophilus DSM 18228] gi|224020170|gb|EEF78168.1| hypothetical protein BACCOPRO_03693 [Bacteroides coprophilus DSM 18228] Length = 385 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 111/371 (29%), Positives = 168/371 (45%), Gaps = 28/371 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 M + +SGGVDS+V LL GY D+ + + + S C A +D+ A Sbjct: 30 MNLAALISGGVDSAVAVHLLCEQGYKPDLFYIRIGMDTDDGLS-----CTAEEDIELATA 84 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + V D ++ + + V+ G TP P V CN+ +KF Sbjct: 85 TARKYGLKLEVVDLQQEYWDRVVAYTIDKVRQGFTPNPDVMCNKLIKFG-CFEEKAGHAY 143 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + G + + D +DQ+ FL Q+ L FPLG + K+ Sbjct: 144 DRIATGHYASTCEREG-----KVWLATAKDPVKDQTDFLAQIDYLQVSRLLFPLGGLMKQ 198 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR+ A L A + DSQ ICF+ + Y D ++R G IV L +G+ +G H Sbjct: 199 EVRETALAARLPSARRKDSQGICFLGKINYNDFIRRFLG--ERPGAIVELESGREIGTHK 256 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH----RIYLREINWLGD 313 G +TIGQR+GLG++ G P FVV D + + V R VH + L + +++ + Sbjct: 257 GFWFHTIGQRKGLGLS-GGPWFVVDKDPEKNLLFVS-RGYDTVHQYGRKFRLTDFHFITE 314 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + +A CF KIR + +P ++ G V+ G+A GQ V Y Sbjct: 315 NPWPEAGEQEI-CF-KIRHTDQFLPGVIRPAGTGYEVESPHLIQGIAPGQFGVIY---DR 369 Query: 374 EARV-LGGGII 383 EAR+ +G G I Sbjct: 370 EARLCIGSGEI 380 >gi|149183669|ref|ZP_01862083.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Bacillus sp. SG-1] gi|148848617|gb|EDL62853.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Bacillus sp. SG-1] Length = 216 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/207 (38%), Positives = 110/207 (53%), Gaps = 15/207 (7%) Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 Q QL + FP+G + K+ VR++A+E GL A K DS ICF+ + + D + N A Sbjct: 6 QDQLEKVMFPIGSIDKKKVREIAKEAGLATATKKDSTGICFIGERNFKDFLS--NYLPAQ 63 Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVY--LDKNSSRVIVG-PRES 297 G++ L+G++ G H+G++ YTIGQR+GLG+ GEP FV+ LD+N V G E+ Sbjct: 64 PGNMETLSGEVKGNHDGLMYYTIGQRQGLGIGGAGEPWFVIGKDLDRNVLFVEQGFDHEA 123 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSE 356 L I +I+W D F+C K R Q+ V VQ DD V V F++ Sbjct: 124 LYSDSILATDISWTSD----KEKTTEFECTAKFRYRQEDHEVKVQLLDDNTVKVIFKEPV 179 Query: 357 VGVASGQACVFYTSDSNEARVLGGGII 383 V GQA VFY D LGGG I Sbjct: 180 RAVTPGQAVVFYNGD----ECLGGGTI 202 >gi|299470175|emb|CBN78203.1| tRNA-methyltransferase [Ectocarpus siliculosus] Length = 478 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 100/329 (30%), Positives = 143/329 (43%), Gaps = 52/329 (15%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 +SGGVDSSV LL GY + L+++ + + C +D+ A VC+ V Sbjct: 3 LSGGVDSSVAMRLLLDQGYKIRAFYLKIWLEDELAHLN-ECPWEEDLAYATAVCEQAGVP 61 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 V + + + V+ G TP P V CN +KF + V ATGHY Sbjct: 62 LEVVPLQREYWDQVVSYTVREAREGRTPNPDVMCNSRIKFGMFYDHVGKHFRHV-ATGHY 120 Query: 147 IR--------------------------------SRLYVGDDGKRRRIMCRPMDLERDQS 174 R R+ G D R R++ P D +DQ+ Sbjct: 121 ARLEHSGGSDDANATPSDRSAAAAAAAAGTEEPPVRVAAGSDRGRVRLLLSP-DAVKDQT 179 Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234 YFL A TQ QL FPLG K+ +R+LA L + DSQ ICF+ + K FD + Sbjct: 180 YFLCALTQDQLRKALFPLGVYTKDQIRELAESYDLPTKHRKDSQGICFLGKLK-FDEFLQ 238 Query: 235 INAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLG-------VAMGEPLFVVYLDKNS 287 G + G IV G+ +G H G+ +TIGQR+G+G V +G P +V DK+ Sbjct: 239 HYLGTS-PGAIVDQTGRHIGEHKGLWFHTIGQRKGVGPGLVPGVVNLG-PWYVA--DKDM 294 Query: 288 SR---VIVGPRESLEVHRIYLR--EINWL 311 R V+ RE++ R R + W+ Sbjct: 295 ERNVLVVTNDREAIASPREVFRVEALQWI 323 >gi|164663299|ref|XP_001732771.1| hypothetical protein MGL_0546 [Malassezia globosa CBS 7966] gi|159106674|gb|EDP45557.1| hypothetical protein MGL_0546 [Malassezia globosa CBS 7966] Length = 346 Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 103/330 (31%), Positives = 158/330 (47%), Gaps = 26/330 (7%) Query: 67 CCAGQDVYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 C ++ +D + VC + + + D + V P ++ G TP P V+CN+ +K Sbjct: 23 CDWQREWHDVQAVCRHLGGMQVEMIDLSRDYWVHVFEPALGQWSDGTTPNPDVECNKFIK 82 Query: 126 FSDLLS--VTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 F L+ V + L A LATGHY R + + ++ R D +DQS+FL + + Sbjct: 83 FGALMDRVVPKSLIPATWLATGHYARIAPRI-EHTHIYPVVRRAADPTKDQSFFLSSVSS 141 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKR-INAGIA 240 +L FPLGDM K VR LAR + L +KS+S +CFV ++G R ++ +A Sbjct: 142 SRLDRSLFPLGDMHKSDVRSLARSLALPTCEKSESMGLCFVGERGSGAHAFARFLDQYVA 201 Query: 241 LE-GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEP--LFVVYLDKNSSRVIVGPRES 297 E G V GQ LG H G+ TIGQR + G+P +V D + ++IV P +S Sbjct: 202 NEAGAFVTPEGQYLGMHRGLHTLTIGQRARIS---GKPQRYYVARKDPVTRQIIVVPSKS 258 Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFE 353 L+ + +W+ D + ++R Q+ VP FV+ + DGV+V+F Sbjct: 259 HPMLQCTSLQSTVFSWVTGVPVLDT-----QLLAQVRYRQNAVPCFVRAHGLDGVHVEFT 313 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGII 383 S V+ GQ V Y + LG G I Sbjct: 314 TSVEAVSPGQTVVLYDGE----LCLGSGTI 339 >gi|153807884|ref|ZP_01960552.1| hypothetical protein BACCAC_02170 [Bacteroides caccae ATCC 43185] gi|149129493|gb|EDM20707.1| hypothetical protein BACCAC_02170 [Bacteroides caccae ATCC 43185] Length = 354 Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 89/275 (32%), Positives = 125/275 (45%), Gaps = 17/275 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + +SGGVDSSVV LL GY TL C A +D+ + Sbjct: 1 MDIAALLSGGVDSSVVVHLLCEQGYKP---TLFYIKIGMDGAEYMDCSAEEDIELSTATA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +S V D + + V G TP P V CN+ +KF +++G D Sbjct: 58 RKYGLSLEVVDLHREYWDNVAAYAIDKIKKGLTPNPDVMCNKLIKFG---CFEQRIGKDF 114 Query: 141 --LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 ATGHY + G + + D +DQ+ FL Q+ L FP+G + K Sbjct: 115 DYTATGHYATTLQRNG-----KTWLGTAKDPVKDQTDFLAQIDYLQVSKLMFPIGGLMKH 169 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR++A L A + DSQ ICF+ + Y D V+R EG I+ L G+ LG H Sbjct: 170 EVREIALNADLPSARRKDSQGICFLGKINYNDFVRRFLG--EKEGMIIELETGKKLGTHR 227 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV 292 G +TIGQR+GLG++ G P FV+ D + + V Sbjct: 228 GYWFHTIGQRKGLGLS-GGPWFVIKKDIQENIIYV 261 >gi|296415367|ref|XP_002837361.1| hypothetical protein [Tuber melanosporum Mel28] gi|295633226|emb|CAZ81552.1| unnamed protein product [Tuber melanosporum] Length = 512 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 116/477 (24%), Positives = 197/477 (41%), Gaps = 118/477 (24%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGY---DVIGVTLQLYNS---------------- 57 +P D ++ +AMS GVDSSV AALL R G+ +++ + ++ Sbjct: 52 SPHD-KIFIAMSSGVDSSVAAALLLRSGHPRENLLPFYMANWSPSANPDPIPPPPSLPGR 110 Query: 58 ---RKASKRKGSC-----CAGQDVYDARRVCDTINVSHYV-FDYEERFRNAVIVPFASSY 108 +AS R S C ++ D + VC +++ + ++E+ + V VP Y Sbjct: 111 ARRNRASTRPQSNEGSLKCTEREFNDVKDVCRALDLPEPICMNFEKEYWCEVFVPMLEMY 170 Query: 109 AAGETPLPCVDCNRTVKFSDLLS------------VTRQLGADVLATGHYIRSRLYVGDD 156 G+TP P V+CNR +KF ++ VT + LATGHY ++ Sbjct: 171 RCGKTPNPDVECNRHIKFGAVIKRLRDEFRRRWEGVTEKGSKWWLATGHYAHILYHIPTK 230 Query: 157 GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESVRDLAREMGLD---- 210 + R +D+ +DQ+++L + L L FPLG + K V+ LARE+ L Sbjct: 231 SYH---LLRSIDINKDQTFYLSTLHRDVLSRLLFPLGSYGLSKPGVKSLARELLLPGWRP 287 Query: 211 -IADKSDSQDICFVQQ--GKYFDVVKRINAGI--ALEGDIV-----------------HL 248 ++ +S +CFV+ GK +R +G GD+V Sbjct: 288 GQTERPESMGLCFVEPAGGKGKTGFRRFLSGYLEPEPGDVVIGPSKKYPGGGESEGACAP 347 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLF--VVYLDKNSSRVIVGPRESLEV------ 300 G ++G+H G+ + TIG+R + P + Y+ + + + +LE+ Sbjct: 348 EGSVVGKHAGLWHATIGERARFQLPQASPEYRGKWYVSRKNREL-----NTLEIVRGQDN 402 Query: 301 HRIY-----LREINWLGDG----LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG---- 347 R+Y + + WLGD + E + +G + R Q P+ V G Sbjct: 403 ARLYGKGMVVEKWRWLGDDAADIVRERSASNGRGLVTQFRHRQIPLKVSSVEQPGGPGYR 462 Query: 348 -----------VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVE 393 + + F+ + +A GQ+ + D R LGGG+I DA+E Sbjct: 463 PCSEGNEPAPALKIIFDSPAMAIAPGQSAALWFRD----RCLGGGVI-----RDAIE 510 >gi|332022487|gb|EGI62794.1| Mitochondrial tRNA-specific 2-thiouridylase 1 [Acromyrmex echinatior] Length = 239 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 117/234 (50%), Gaps = 15/234 (6%) Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 +D DAR +CD + +S ++ + + N V Y G TP P + CN+ +KF Sbjct: 4 KDYDDARWICDKLEISLIQINFVKEYWNEVFSDLLEKYQNGYTPNPDILCNKNIKFDKFF 63 Query: 131 SVTR-QLGADVLATGHYIRSRL------YVGDDGKRRRIMCRPM---DLERDQSYFLFAT 180 + R + AD +ATGHY ++ Y + K + R + D +DQ++FL Sbjct: 64 HLARDKFQADAIATGHYAKTSFGPYLENYEANTSKYPILNVRLLQAQDSNKDQTFFLGQI 123 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGI 239 QQ L FPLG+ K V+ +A + GL IA K +S ICFV + ++ D + A Sbjct: 124 PQQTLRRCMFPLGNYLKNHVKVMAMQAGLCQIARKKESTGICFVGKREFQDFISEYIADK 183 Query: 240 ALEGDIVHLN-GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV 292 G+ + L+ G +G+HNGI TIGQR + + +P +V D+ S+ + V Sbjct: 184 P--GNYIDLDSGLQIGKHNGIHKRTIGQRCKIAGCL-KPYYVFNKDQKSNTITV 234 >gi|326911266|ref|XP_003201982.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like [Meleagris gallopavo] Length = 346 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 94/312 (30%), Positives = 136/312 (43%), Gaps = 41/312 (13%) Query: 106 SSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADVLATGHYIRSRL-----YVGDDGKR 159 Y G TP P + CN+ +KF+ L LGAD +ATGHY R+ L + KR Sbjct: 10 KEYELGRTPNPDIVCNKHIKFNHFLHYAMDNLGADAIATGHYARTSLEDEEVFQQKHMKR 69 Query: 160 RRIMCRP-------------MDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 R + R DL +DQ++FL +Q L FPLGD+ K VR +A E Sbjct: 70 PRELFRNRFEVRNTVKLLQGADLFKDQTFFLSQISQDALRKTIFPLGDLTKSFVRKIASE 129 Query: 207 MGLDIADKS---------DSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRH 256 GL K S ICF+ + + + + G+ V + + +++G H Sbjct: 130 HGLHHVLKKKEACSTFLFQSMGICFIGERNFEKFL--LEYLEPQPGNFVSIEDKKVMGTH 187 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLR--EINWLGD 313 G YTIGQR L + FVV D ++ + V P + ++R LR ++W+ + Sbjct: 188 KGWFLYTIGQRARLA-GQQDAWFVVDKDVSTGDIFVAPSTDHPALYRDLLRTNRVHWIAE 246 Query: 314 GLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 + V D +C + R VP + N DG V+V K + GQ VFY D Sbjct: 247 EPPAELVRDKMMECHFRFRHQMALVPCVLTLNQDGSVWVTLVKPARALTPGQFAVFYKGD 306 Query: 372 SNEARVLGGGII 383 LG G I Sbjct: 307 E----CLGSGKI 314 >gi|303325418|ref|ZP_07355861.1| tRNA methyl transferase [Desulfovibrio sp. 3_1_syn3] gi|302863334|gb|EFL86265.1| tRNA methyl transferase [Desulfovibrio sp. 3_1_syn3] Length = 372 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 80/207 (38%), Positives = 108/207 (52%), Gaps = 7/207 (3%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR+ VA+SGGVDS LL+R G+DV+ + + ++ R G C +A C Sbjct: 1 MRIAVAVSGGVDSLCALLLLRRAGHDVLALH-GFFLPEQSHPRPGGACDPLPGLEA--AC 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +++ + D F+ V++PFA SYA G TP PC CNR VKF LL LGAD Sbjct: 58 RALDIPLHTVDLRAVFQREVMIPFARSYAEGRTPNPCARCNRAVKFGALLDAALALGADK 117 Query: 141 LATGHYIRSRLYVGDDGKR--RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 LATGHY +RL G +G++ ++ D +DQSYFL +L FPL D K Sbjct: 118 LATGHY--ARLLPGRNGEKDAPPVLAAAHDRAKDQSYFLSLVPAARLRHAFFPLADQDKA 175 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQ 225 L GL + +SQDICFV + Sbjct: 176 RSVALVAAAGLAVPLPRESQDICFVPE 202 >gi|31747827|gb|AAO38412.1| Lfe204p1 [Leptospirillum ferrooxidans] Length = 238 Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 66/197 (33%), Positives = 104/197 (52%), Gaps = 18/197 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-----------CCAG 70 RV+V MSGGVDS+V A ++K+ GYDV G +++++S +S+ S CC Sbjct: 4 RVLVGMSGGVDSAVSALIMKQSGYDVTGAIIEIWDSEDSSECHPSSENARPWSERGCC-- 61 Query: 71 QDVYDARRVCDTI-NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 V R +C+ + + + D + FR V+ PF Y TP PCV CN VK +L Sbjct: 62 -HVPMVRYLCEEVLEIPFVMVDRRDDFRKKVMDPFRDEYLKALTPNPCVTCNARVKIHEL 120 Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 +++ LG +++ATGHY R ++Y G+ + + D F + +++ L Sbjct: 121 IALADSLGIEMVATGHYAR-KVYSPVTGQYH--VAKGRDPGEGPVLFFGSLKSEEIARLV 177 Query: 190 FPLGDMKKESVRDLARE 206 +PL D+ KE VR LAR+ Sbjct: 178 WPLSDLTKEEVRKLARD 194 >gi|258648071|ref|ZP_05735540.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella tannerae ATCC 51259] gi|260851930|gb|EEX71799.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella tannerae ATCC 51259] Length = 364 Score = 105 bits (263), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 103/372 (27%), Positives = 162/372 (43%), Gaps = 27/372 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+ +SGGVDS+V LLK G +T L+ + + +G C A +D A Sbjct: 4 MKTAALISGGVDSAVAVHLLKEQG-----ITPDLFYIKIGNGPQGEWDCKAEEDWEMATA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + D ++ + + V+ G TP V CN+ +KF Sbjct: 59 VARRYGCKLKLIDLQKEYWDEVVGYIVDRLRKGLTPNSDVMCNKYIKFG-CFEEREGHNY 117 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY ++ D+ R + P D +DQ+ FL + L FP+G + K+ Sbjct: 118 DRIATGHYAQTET---DEAGRVWLTTAP-DPIKDQTDFLAQLDGFSVRKLIFPIGGLMKD 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGR 255 VR +A+ L A + DSQ ICF+ + + ++ ++ G+ +E + G I+G+ Sbjct: 174 EVRKIAQAAHLAPAKRKDSQGICFLGKISFSELARKYLGEKEGLVVEQE----TGNIIGK 229 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR--EINWLGD 313 H G YTIGQR+GLG G P +VV K+ R I+ E Y + I Sbjct: 230 HKGYWFYTIGQRKGLGFG-GGPWYVV--RKDIKRNIIYVSRGFETKAAYGKAFRIEMPHF 286 Query: 314 GLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + DG ++ K+R + + P + + ++ G+A GQ V Y D Sbjct: 287 ITYNPYEADGDYRVTFKVRHTPEFTPGRLLVRGGKYELHSDELIQGIAPGQFAVLY--DE 344 Query: 373 NEARVLGGGIIS 384 R LG G I Sbjct: 345 QAHRCLGSGEIG 356 >gi|88803301|ref|ZP_01118827.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Polaribacter irgensii 23-P] gi|88780867|gb|EAR12046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Polaribacter irgensii 23-P] Length = 173 Score = 105 bits (263), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 91/164 (55%), Gaps = 2/164 (1%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V +SGGVDSSV A LLK+ GY+VIG+ ++ ++ + C +D DA V + Sbjct: 3 RVIVGLSGGVDSSVTAYLLKKQGYEVIGLFMKNWHDDSVT-ISNDCPWLEDSNDAMLVAE 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + V D + ++ ++ S Y G TP P V CNR +KF + + +LGAD + Sbjct: 62 KLGIPFQVVDLSKDYKERIVDYMFSEYRKGRTPNPDVLCNREIKFDVFMDIALKLGADYV 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 ATGHY R V + +++ D+ +DQSYFL +Q QL Sbjct: 122 ATGHYCRKEEEVIEGASVYKLLAGK-DVNKDQSYFLCQLSQDQL 164 >gi|225022757|ref|ZP_03711949.1| hypothetical protein CORMATOL_02802 [Corynebacterium matruchotii ATCC 33806] gi|224944478|gb|EEG25687.1| hypothetical protein CORMATOL_02802 [Corynebacterium matruchotii ATCC 33806] Length = 200 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 76/205 (37%), Positives = 104/205 (50%), Gaps = 17/205 (8%) Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHL 248 FP+GD K +R+ A MG +A K DS DICF+ G + + A I L G IV Sbjct: 2 FPVGDTIKPKIREEAAAMGFSVAKKPDSYDICFIPDG---NTQAFLGARIGLRPGMIVDT 58 Query: 249 NGQILGRHNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 G L H+G NYTIGQR+GL + A G+P +V ++ + V VG R L V I Sbjct: 59 EGNKLREHDGAWNYTIGQRKGLDIKQPAADGQPRYVTDINAQTGTVTVGSRRDLSVGVIE 118 Query: 305 LREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVP--VFVQRNDDGVYVDFEKSEVGVAS 361 + +L ++DG F V++R+ VP V V R D + ++ +K+ GVA Sbjct: 119 ADRLKYL------HPMMDGSFDADVQVRAHGSVVPCHVTVDREADFMRLELKKALQGVAR 172 Query: 362 GQACVFYTSDSNEARVLGGGIISGS 386 GQA V Y D VLG G I G+ Sbjct: 173 GQAAVLYLPDPGGDIVLGSGTICGT 197 >gi|294463455|gb|ADE77257.1| unknown [Picea sitchensis] Length = 323 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 85/268 (31%), Positives = 129/268 (48%), Gaps = 36/268 (13%) Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +A+GHY + + + ++ D +DQ+YFL +Q+QL L FPLG M KE Sbjct: 4 DYVASGHYAHVKHLSVECETKCSVLHLSADEVKDQTYFLSHLSQEQLRKLLFPLGCMSKE 63 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQILGR 255 VR+LA EMGL D+ DSQ +CF+ + K+ + V R GI LE + G LG+ Sbjct: 64 EVRNLAAEMGLLNKDRKDSQGLCFLGKVKFSEFVARHIGEMEGILLEAE----TGDFLGK 119 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE-SLEVHR--IYLREINWLG 312 H G YTIGQR+GL ++ G P +VV D ++ V V SL+ R ++ + W+ Sbjct: 120 HRGFWFYTIGQRQGLRLS-GGPWYVVAKDVENNVVFVSRNYFSLDKKRCLFHVSSLKWIL 178 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV--------------- 357 +D +D +C K+R ++ +Y + E + Sbjct: 179 GSPPKD--LDKLQC--KVRHGPKFYNCHMELVKGNLYKENEHQSLGETAQEIAIVRLSED 234 Query: 358 --GVASGQACVFYTSDSNEARVLGGGII 383 G+A+GQ FY ++ LG GII Sbjct: 235 DQGLAAGQYVAFYKGNT----CLGSGII 258 >gi|320534232|ref|ZP_08034748.1| tRNA methyl transferase [Actinomyces sp. oral taxon 171 str. F0337] gi|320133564|gb|EFW25996.1| tRNA methyl transferase [Actinomyces sp. oral taxon 171 str. F0337] Length = 245 Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 72/221 (32%), Positives = 107/221 (48%), Gaps = 10/221 (4%) Query: 162 IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDI 220 + R D +DQSY L + + L FPLGD K VR A GL +A K DS DI Sbjct: 18 TLRRAADAAKDQSYVLAVSGRDGLSRALFPLGDAPSKADVRAEAERRGLPVASKPDSYDI 77 Query: 221 CFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM----GE 276 CFV G + R + G+ EG +V +G +LG H+G +T+GQR+GLG+ G Sbjct: 78 CFVADGDTRGFLTR-SLGVH-EGTLVSPDGDVLGTHDGYFGFTVGQRKGLGLTRPAPDGR 135 Query: 277 PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL-FEDAVVDGFKCFVKIRSSQD 335 P +V+ +++ V+VGP E L + + L D L D + +++R+ Sbjct: 136 PRYVIETRPSTNEVVVGPEELLSRKSVDGNNLILLADPLPLNDGDLGWQDVTIQVRAHGR 195 Query: 336 PVP--VFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 P+P V V + G+A+GQ+ V Y DS + Sbjct: 196 PLPADVAVDVETGTLRAKLHHPLRGLAAGQSVVVYGGDSGD 236 >gi|315123662|ref|YP_004065666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017384|gb|ADT65477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 199 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 70/206 (33%), Positives = 109/206 (52%), Gaps = 17/206 (8%) Query: 182 QQQLCDLRFPLGDMKKESVRDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 ++ L L FPLG+MKKE V+ A E+ A + +S +ICFV+ Y V+ + Sbjct: 6 KEALKYLIFPLGEMKKEDVKKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQF-MDT 63 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 + G+++ +G+++G+H G ++YTIG+RRG V EP FV+ ++ +++IVG +E L Sbjct: 64 KIPGEVLDSSGKVVGKHEGYMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEEL 123 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEV 357 ++ L+ IN LF DA C VKIR P V+ D + + Sbjct: 124 KISEFNLKNIN-----LFIDA--KELDCEVKIRYRSKSTPCKVEIYEDKSAKIILKDPVY 176 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 G+ASGQ VFY D +V+ G I Sbjct: 177 GLASGQMAVFYDHD----KVIASGFI 198 >gi|7022010|dbj|BAA91462.1| unnamed protein product [Homo sapiens] Length = 166 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 54/131 (41%), Positives = 74/131 (56%), Gaps = 4/131 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV A+SGGVDS+V A LL+R GY V GV ++ ++S G C A +D DA RVC Sbjct: 6 HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDS---LDEHGVCTADKDCEDAYRVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140 +++ + Y + + N V F + Y G TP P + CN+ +KFS LGAD Sbjct: 63 ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122 Query: 141 LATGHYIRSRL 151 +ATGHY R+ L Sbjct: 123 IATGHYARTSL 133 >gi|238590061|ref|XP_002392203.1| hypothetical protein MPER_08255 [Moniliophthora perniciosa FA553] gi|215457930|gb|EEB93133.1| hypothetical protein MPER_08255 [Moniliophthora perniciosa FA553] Length = 173 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 56/172 (32%), Positives = 88/172 (51%), Gaps = 2/172 (1%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83 V+AMSGGVDSSVVA LL +D+ V ++ ++ R S C +D D RR+C + Sbjct: 1 VIAMSGGVDSSVVAKLLSERDHDLSAVFMRNWDLRDESGTDEGCQWERDWNDVRRLCKAL 60 Query: 84 NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143 ++ + D + + + P + +G+TP P V CNR +KF LL LAT Sbjct: 61 DIPCKMVDLSKEYWTRIFEPSLEIWQSGQTPNPDVWCNREIKFGALLDRLSLDEGTWLAT 120 Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 GHY R G + + + + + D +DQ+++L + + L FPLG + Sbjct: 121 GHYARKAWQEGSNPRPKLLSAK--DRIKDQAFYLASINETGLSRALFPLGHL 170 >gi|325119377|emb|CBZ54930.1| putative tRNA methyltransferase domain-containing protein [Neospora caninum Liverpool] Length = 1109 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 90/314 (28%), Positives = 133/314 (42%), Gaps = 63/314 (20%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY---------------NSRKASK 62 P + V +SGGVDSSV LL++ G+ ++++ A Sbjct: 346 PLSEEIAVLLSGGVDSSVSLRLLQQRGFSPRAFFIKIWLPEYLLVSRHLPREDTGESALP 405 Query: 63 RKGSCCAGQ-DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 G C + D+ A +VC V V +E + V+ G TP P CN Sbjct: 406 EAGRACGWRADLTFAEQVCRQARVPLEVLPLQEAYWEGVVKQLLDEARQGLTPNPDWWCN 465 Query: 122 RTVKFS---DLL-------SVTRQLG--------------------ADVLATGHYIR--- 148 + VKF DLL +++R G +A+GHY R Sbjct: 466 QRVKFGAFLDLLDGRENRRNLSRHNGDKASEAKNAERPSSAWSSCWTGAVASGHYARVVH 525 Query: 149 ------SRLYVGDD-----GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 S G + G RR + R D +DQSYFL +Q+QL L P+GDM+K Sbjct: 526 DAEAARSGQREGHEREDERGDRRTRLLRGKDRRKDQSYFLSGLSQRQLRRLLTPVGDMEK 585 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI-LGRH 256 VR LA + L A + DSQ +CF+ GK + + + G ++H + LG H Sbjct: 586 VEVRRLAAGLALPTASRRDSQGLCFL--GKLPLSLFFQHFLGSSPGPVLHFPSCLALGTH 643 Query: 257 NGIINYTIGQRRGL 270 G+ N+T+GQR+G+ Sbjct: 644 GGLWNFTVGQRKGV 657 >gi|213850106|ref|ZP_03381004.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 209 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 65/212 (30%), Positives = 111/212 (52%), Gaps = 19/212 (8%) Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R A Sbjct: 1 HEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQ 58 Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD-KNSSRVIVGPR 295 G I+ ++G +G H G++ +T+GQR+GLG+ +P +VV D +N+ ++ Sbjct: 59 PGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGH 118 Query: 296 ESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDF 352 E + + L ++++W+ F +C VK R Q +P + +DD + V F Sbjct: 119 EHPRLMSVGLIAQQLHWVDREPFTGT----LRCTVKTRYRQTDIPCTINALDDDRIEVIF 174 Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 ++ V GQ+ VFY+ + LGGGII Sbjct: 175 DEPVAAVTPGQSAVFYSGEV----CLGGGIIE 202 >gi|149065692|gb|EDM15565.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase (predicted), isoform CRA_b [Rattus norvegicus] Length = 166 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 53/131 (40%), Positives = 75/131 (57%), Gaps = 4/131 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV A+SGGVDS+V A LL+R GY V GV ++ ++S +G C A +D DA +VC Sbjct: 6 HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLD---EQGICAADKDCEDAYKVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADV 140 +++ + Y + + N V F + Y G TP P + CN+ +KFS LGAD Sbjct: 63 ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDISCNKHIKFSCFHHYAVDNLGADA 122 Query: 141 LATGHYIRSRL 151 +ATGHY R+ L Sbjct: 123 VATGHYARTSL 133 >gi|320534234|ref|ZP_08034749.1| tRNA methyl transferase [Actinomyces sp. oral taxon 171 str. F0337] gi|320133539|gb|EFW25972.1| tRNA methyl transferase [Actinomyces sp. oral taxon 171 str. F0337] Length = 131 Score = 97.8 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 59/130 (45%), Positives = 75/130 (57%), Gaps = 3/130 (2%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ A+SGGVDS+V AA G++V+GV + L +R + R GS CC+ +D DAR Sbjct: 1 MRVLAALSGGVDSAVAAARAVDAGHEVVGVHMALTRNRTQT-RSGSRGCCSIEDSADARW 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + YV+D E F V+ F Y AG TP PCV CN VKF LL LG Sbjct: 60 AAQILGIPFYVWDLSEEFEERVVADFLDEYRAGRTPNPCVRCNERVKFDALLERALALGF 119 Query: 139 DVLATGHYIR 148 D +ATGHY R Sbjct: 120 DAVATGHYAR 129 >gi|289670489|ref|ZP_06491564.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 238 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 73/228 (32%), Positives = 109/228 (47%), Gaps = 19/228 (8%) Query: 168 DLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGK 227 D +DQSYFL Q QL FP+GD++K ++R A++ GL K DS ICF+ + Sbjct: 2 DRGKDQSYFLHQLGQTQLAATLFPIGDLEKSTLRRTAQDAGLPTHAKKDSTGICFIGERD 61 Query: 228 YFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVY 282 + + + R A G+I GQ + H G+ +T+GQR GL + P +VV Sbjct: 62 FREFLGRYLP--ARTGEIRDPRGQRIAEHPGVFYFTLGQREGLNIGGVRGRAAAPWYVVG 119 Query: 283 LDKNSSRVIVGP-RESLEVHRIYLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339 D S+ + V R+S + +L+ + +W+ F C + R Q P Sbjct: 120 KDVASNVLYVDQDRDSPLLQSRWLQSEQAHWVTGA----PPARRFSCTAQTRYRQPDEPC 175 Query: 340 FVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 V DDG V V FE+ + V GQ+ V Y D E LGG +I+ + Sbjct: 176 TVDVQDDGSVKVHFERPQRAVTPGQSLVLY--DGEE--CLGGAVIAAT 219 >gi|294645486|ref|ZP_06723187.1| tRNA methyl transferase [Bacteroides ovatus SD CC 2a] gi|292639187|gb|EFF57504.1| tRNA methyl transferase [Bacteroides ovatus SD CC 2a] Length = 216 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 68/209 (32%), Positives = 107/209 (51%), Gaps = 26/209 (12%) Query: 190 FPLGDMKKESVRDLAREMGLDIADKS-DSQDICFVQQGKYFDVVKRINAGIALE---GDI 245 FPLGD K VR+ E G + K +S ++CF++ G Y D ++ + E G Sbjct: 11 FPLGDYTKVKVREYLAEKGYEAKSKEGESMEVCFIK-GDYRDFLREQCPELDSEIGSGWF 69 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 V+ G LG+H G YTIGQR+GL +A+G+P +V+ ++ + V++G + LE + Sbjct: 70 VNSEGVKLGKHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLETEYMLA 129 Query: 306 REINWLGDGLFEDAVVDGFKCF------VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVG 358 +D +VD + F V+IR P+P V+R +DG + V F ++ Sbjct: 130 E----------QDKIVDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASA 179 Query: 359 VASGQACVFYTSDSNEARVLGGGIISGSK 387 +A GQ+ VFY RVLGG I+ + Sbjct: 180 IAPGQSAVFYDG----RRVLGGAFIASQR 204 >gi|219123581|ref|XP_002182101.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406702|gb|EEC46641.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 394 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 108/383 (28%), Positives = 163/383 (42%), Gaps = 39/383 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKR-----DGYDVIGVTLQL-----YNSRKASKRK-GSCCAG 70 RVV+A+SGGVDS+V AALL+ + D+ LQ +NS SC + Sbjct: 1 RVVLALSGGVDSAVAAALLQETYGSSNNSDIGSAVLQTVHMSNWNSNTQDDDSIASCTSE 60 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 QD DA V + + ++ +E + N V P+ + G P + CN VKF L Sbjct: 61 QDWKDATAVAEHLRLNLTRQHFEREYWNQVFEPYVNDILRGTMGNPDIGCNVHVKFGALR 120 Query: 131 SVT---RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 + G D + HY ++ D +DQSYFL A QL + Sbjct: 121 EFADWVLRWGWDQPPSPHYSHHNHQYQTPPP---LLLAAADPSKDQSYFLSACAGYQLSN 177 Query: 188 LRFPLGD-MKKE--------SVRDLAREMGLDIADKSDSQDICFV--QQGKYFDVVKRIN 236 + FPLG+ KKE +VR LA++ L A+K +S ICFV +Q + D + Sbjct: 178 VLFPLGEYYKKENPSNDGKPTVRQLAKDYNLPNANKRESMGICFVGKRQSGFGDFLHEYL 237 Query: 237 AGIALEGDIVHLN-GQIL----GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVI 291 V ++ G +L ++ + YTIGQ + A E FVV D +RV+ Sbjct: 238 PHPLRPLQFVDVDTGAVLPAPTPKNAHAVLYTIGQGAKISGA-SEKYFVVDSDVAQNRVL 296 Query: 292 V---GPRESLEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG 347 V +L + L + W + G + +IR Q + ++ DG Sbjct: 297 VCAGTHHPALYADSLVLETVYWTAGEMPGPLQKRGRLRLQCRIRHLQPLIDCELRVELDG 356 Query: 348 -VYVDFEKSEVGVASGQACVFYT 369 + V F+K+ G+ GQ FY Sbjct: 357 SLTVYFDKAVRGITPGQTAAFYA 379 >gi|119593829|gb|EAW73423.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase, isoform CRA_b [Homo sapiens] Length = 307 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 79/279 (28%), Positives = 128/279 (45%), Gaps = 46/279 (16%) Query: 137 GADVLATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLF 178 GAD +ATGHY R+ L + +++ + + + D +DQ++FL Sbjct: 5 GADAIATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLS 64 Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVV----- 232 +Q L FPLG + KE V+ +A E L + K +S +CF+ + + + Sbjct: 65 QVSQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQ 124 Query: 233 KRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV 292 R I++E + ++LG H G YT+GQR +G + EP +VV D V V Sbjct: 125 PRPGHFISIE------DNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFV 177 Query: 293 GPR-ESLEVHRIYLR--EINWLGD----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND 345 PR + ++R LR ++W+ + L D +++ C + R VP + N Sbjct: 178 APRTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMME---CHFRFRHQMALVPCVLTLNQ 234 Query: 346 DG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 DG V+V ++ +A+GQ VFY D LG G I Sbjct: 235 DGTVWVTAVQAVRALATGQFAVFYKGDE----CLGSGKI 269 >gi|289670488|ref|ZP_06491563.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 130 Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 51/127 (40%), Positives = 69/127 (54%), Gaps = 4/127 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+VV +SGGVDSSV A L + G + G+ +Q + A G C A D DA VC Sbjct: 4 RIVVGVSGGVDSSVAAWKLAQQGEQIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + + V F + YAAG TP P V CNR VKF L + LGA+ + Sbjct: 60 VLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 119 Query: 142 ATGHYIR 148 ATGHY + Sbjct: 120 ATGHYAQ 126 >gi|221507042|gb|EEE32646.1| tRNA methyl transferase, putative [Toxoplasma gondii VEG] Length = 1596 Score = 90.9 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 96/325 (29%), Positives = 136/325 (41%), Gaps = 78/325 (24%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYD----VIGVTL-----------QLYNSRKASKRKGS 66 +V V +SGGVDSSV LL++ G+ I V L +L +S A G Sbjct: 830 QVAVLLSGGVDSSVSLCLLQQRGFAPQAFFIKVWLPELLLVSRHLNRLLDSGLAPAAAGG 889 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C +D+ A +VC V V +E + V+ G TP P CN+ VKF Sbjct: 890 CGWERDLLFADQVCRQARVPLEVLPLQEAYWEGVVQQMLDEARQGLTPNPDWWCNQRVKF 949 Query: 127 S---DLL-------SVTRQLG----------ADV------------LATGHYIR------ 148 DLL S R G AD+ +A+GHY R Sbjct: 950 GAFLDLLDGRETRFSARRIAGESEGENEKEEADMPFLRNSSRWTGAVASGHYARVVPAAE 1009 Query: 149 -SRLYV---------------------GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 SR G + +RR + R D +DQSYFL +Q+QL Sbjct: 1010 TSRRSEEGEDTEDRDEDGEEDRGDKERGSEEERRTRLFRGKDRRKDQSYFLSGLSQRQLR 1069 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 L P+GDM+K VR LA + L A + DSQ +CF+ + + G ++ Sbjct: 1070 RLVTPVGDMEKVEVRRLAAALDLPTARRQDSQGLCFLGNLSLSFFFRHFLG--SSTGPVL 1127 Query: 247 HLNGQI-LGRHNGIINYTIGQRRGL 270 H + LG H+G+ N+T+GQR+G+ Sbjct: 1128 HFPSCLALGSHDGLWNFTVGQRKGV 1152 >gi|237829765|ref|XP_002364180.1| tRNA methyltransferase domain-containing protein [Toxoplasma gondii ME49] gi|211961844|gb|EEA97039.1| tRNA methyltransferase domain-containing protein [Toxoplasma gondii ME49] Length = 1598 Score = 90.9 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 96/325 (29%), Positives = 136/325 (41%), Gaps = 78/325 (24%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYD----VIGVTL-----------QLYNSRKASKRKGS 66 +V V +SGGVDSSV LL++ G+ I V L +L +S A G Sbjct: 832 QVAVLLSGGVDSSVSLCLLQQRGFAPQAFFIKVWLPELLLVSRHLNRLLDSGLAPAAAGG 891 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C +D+ A +VC V V +E + V+ G TP P CN+ VKF Sbjct: 892 CGWERDLLFADQVCRQARVPLEVLPLQEAYWEGVVQQMLDEARQGLTPNPDWWCNQRVKF 951 Query: 127 S---DLL-------SVTRQLG----------ADV------------LATGHYIR------ 148 DLL S R G AD+ +A+GHY R Sbjct: 952 GAFLDLLDGRETRFSARRIAGESEGENEKEEADMPFLRNSSRWTGAVASGHYARVVPAAE 1011 Query: 149 -SRLYV---------------------GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 SR G + +RR + R D +DQSYFL +Q+QL Sbjct: 1012 TSRRSEEGEDTEDRDEDGEEDRGDKERGSEEERRTRLFRGKDRRKDQSYFLSGLSQRQLR 1071 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 L P+GDM+K VR LA + L A + DSQ +CF+ + + G ++ Sbjct: 1072 RLVTPVGDMEKVEVRRLAAALDLPTARRQDSQGLCFLGNLSLSFFFRHFLG--SSTGPVL 1129 Query: 247 HLNGQI-LGRHNGIINYTIGQRRGL 270 H + LG H+G+ N+T+GQR+G+ Sbjct: 1130 HFPSCLALGSHDGLWNFTVGQRKGV 1154 >gi|221481094|gb|EEE19502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Toxoplasma gondii GT1] Length = 1579 Score = 90.9 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 96/325 (29%), Positives = 136/325 (41%), Gaps = 78/325 (24%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYD----VIGVTL-----------QLYNSRKASKRKGS 66 +V V +SGGVDSSV LL++ G+ I V L +L +S A G Sbjct: 813 QVAVLLSGGVDSSVSLCLLQQRGFAPQAFFIKVWLPELLLVSRHLNRLLDSGLAPAAAGG 872 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C +D+ A +VC V V +E + V+ G TP P CN+ VKF Sbjct: 873 CGWERDLLFADQVCRQARVPLEVLPLQEAYWEGVVQQMLDEARQGLTPNPDWWCNQRVKF 932 Query: 127 S---DLL-------SVTRQLG----------ADV------------LATGHYIR------ 148 DLL S R G AD+ +A+GHY R Sbjct: 933 GAFLDLLDGRETRFSARRIAGESEGENEKEEADMPFLRNSSRWTGAVASGHYARVVRAAE 992 Query: 149 -SRLYV---------------------GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 SR G + +RR + R D +DQSYFL +Q+QL Sbjct: 993 TSRRSEEGEDTEDTDEDGEEDRGDKERGSEEERRTRLFRGKDRRKDQSYFLSGLSQRQLR 1052 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 L P+GDM+K VR LA + L A + DSQ +CF+ + + G ++ Sbjct: 1053 RLVTPVGDMEKVEVRRLAAALDLPTARRQDSQGLCFLGNLSLSFFFRHFLG--SSTGPVL 1110 Query: 247 HLNGQI-LGRHNGIINYTIGQRRGL 270 H + LG H+G+ N+T+GQR+G+ Sbjct: 1111 HFPSCLALGSHDGLWNFTVGQRKGV 1135 >gi|294645485|ref|ZP_06723186.1| tRNA methyl transferase [Bacteroides ovatus SD CC 2a] gi|292639186|gb|EFF57503.1| tRNA methyl transferase [Bacteroides ovatus SD CC 2a] Length = 134 Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 14/130 (10%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV+V MSGG+DS+ +L+ GY+++GVT++++ G + DAR Sbjct: 4 RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVW--------------GDEPQDARE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + HYV D F+ ++ F Y G TP PCV CN KF L +L Sbjct: 50 LAERMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109 Query: 139 DVLATGHYIR 148 +ATGHY R Sbjct: 110 AWVATGHYSR 119 >gi|76664739|emb|CAJ17809.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Candidatus Phytoplasma solani] Length = 185 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 57/186 (30%), Positives = 93/186 (50%), Gaps = 12/186 (6%) Query: 32 DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVYDARRVCDTIN 84 +S+V A LLK+ GY+V V ++ ++S KG+ C D DA +V + Sbjct: 3 NSAVAALLLKQQGYEVEAVFMRNWDSNLNFDIKGNPTLNNDICSQELDYNDALKVSLQLG 62 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGADVLAT 143 + + D+ E + V + F +++ TP P + CN +KF + VT +L D +A Sbjct: 63 IKLHRIDFIEEYWKKVFLSFIDAFSNNLTPNPDILCNNEIKFKAFIDYVTDKLKPDYVAM 122 Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 GHY V + + + C +D ++DQ+YFL T QL ++ FPL + K VR + Sbjct: 123 GHYAD---IVTNQDLTKALAC-ALDQKKDQTYFLSQLTTSQLQNIIFPLAKLTKPEVRQI 178 Query: 204 AREMGL 209 A + GL Sbjct: 179 ALDNGL 184 >gi|167945139|ref|ZP_02532213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 145 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 70/134 (52%), Gaps = 5/134 (3%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 +P++ +++V MSGGVDSSV A LL GY V G+ ++ + + K C A D+ D Sbjct: 2 NHPRE-KIIVGMSGGVDSSVAALLLLEQGYQVEGLFMKNW---EEDDTKEYCSAATDLAD 57 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-R 134 A V D + + + ++ + V F Y AG TP P V CNR +KF L Sbjct: 58 ASSVADQLGIPLHSVNFSADYWERVFAYFLDEYRAGRTPNPDVLCNREIKFKAFLDYALS 117 Query: 135 QLGADVLATGHYIR 148 LGA +ATGHY R Sbjct: 118 TLGASRIATGHYAR 131 >gi|167535113|ref|XP_001749231.1| hypothetical protein [Monosiga brevicollis MX1] gi|163772384|gb|EDQ86037.1| predicted protein [Monosiga brevicollis MX1] Length = 495 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 68/226 (30%), Positives = 106/226 (46%), Gaps = 12/226 (5%) Query: 44 GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVP 103 G++V GV ++ ++ + G C A D + + + + D+ + + ++V Sbjct: 10 GHEVTGVFMRTWDELDET---GVCTAEGDWRHVQDIAQRLGIPCKRVDFVQEYWHSVFQV 66 Query: 104 FASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADVLATGHYIRSRLYVGDDGKRRRI 162 AAG TP P + CNR +KF R QLGAD +A GHY R V + Sbjct: 67 MLDELAAGATPNPDILCNRHIKFDAFYHFARDQLGADRVAMGHYAR----VDEREPDMPR 122 Query: 163 MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDIC 221 + R D +DQSYFL L FPLG + K+ V+ LA G D+A + +S +C Sbjct: 123 LLRGCDDNKDQSYFLAGLPVHVLRHAAFPLGHLTKDRVKALAAAAGFSDVAGQRESMGLC 182 Query: 222 FVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGIINYTIGQ 266 FV + ++ +V++ G VHL +G+ LG + T GQ Sbjct: 183 FVGKRRFGALVQQYLP--PRPGVFVHLESGRQLGPVTDLNVITFGQ 226 >gi|213401743|ref|XP_002171644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Schizosaccharomyces japonicus yFS275] gi|211999691|gb|EEB05351.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Schizosaccharomyces japonicus yFS275] Length = 414 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 86/298 (28%), Positives = 126/298 (42%), Gaps = 34/298 (11%) Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 G C + +D ++V + + + ++E + V P Y G TP P V CNR V Sbjct: 11 GGCTSERDWTLVKKVGEKLGIPVTRLNFEHDYWQRVFEPTLEHYRRGWTPNPDVLCNREV 70 Query: 125 KFSDLLSVTRQLGAD-----VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 KF L + AD +ATGHY R+ + D ++ RP D ++DQ+ FL Sbjct: 71 KFGALFEHLSHVMADSKRAWWVATGHYART--CIARDTNETCLL-RPTDAKKDQTLFLCN 127 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQ----QGKYFDVVKR 234 Q L FPL KE V+ A GL + A + +S +CFV +G + + + Sbjct: 128 IPYQALQRTIFPLWQHTKEQVKREAMLHGLEESATRPESMGLCFVSPRNIRGHFRNFLAE 187 Query: 235 INAGIALEGDI--VHLNGQILG---RHNGIINYTIGQRRGLGVAMGE-----PLFVVYLD 284 + D V G +G R GI ++T+G++ GL +A + P +V D Sbjct: 188 Y---LEPSSDPLRVMFRGVCVGVYPRDKGIWSFTVGEKCGLSLAALQRVSQLPWYVWKKD 244 Query: 285 --KNSSRVIVGPRESLEVHR-IYLREINWLGDGL---FEDAVVDGFKCFVKIRSSQDP 336 N+ V G R L R E W FE A D C V+IR Q P Sbjct: 245 VATNAVHVCPGYRHPLLFSRAATCSEWGWASPWCKRAFEGA--DDVACTVRIRHQQQP 300 >gi|88195431|ref|YP_500235.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus NCTC 8325] gi|87202989|gb|ABD30799.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus NCTC 8325] Length = 100 Score = 82.4 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 40/100 (40%), Positives = 58/100 (58%), Gaps = 3/100 (3%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D D VC+ I + Sbjct: 1 MSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIEVCNQIGIP 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 +Y ++E+ + + V F Y G TP P V CN+ +KF Sbjct: 58 YYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKF 97 >gi|313224567|emb|CBY20357.1| unnamed protein product [Oikopleura dioica] gi|313247180|emb|CBY35998.1| unnamed protein product [Oikopleura dioica] Length = 385 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 108/231 (46%), Gaps = 20/231 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 +++RV VA+SGGVDS+V A LLK + G++VIGV + ++S+ + G C A D AR Sbjct: 8 RNLRVAVALSGGVDSAVAAVLLKLQQGHEVIGVHSRNWDSKDEN---GVCQADADYDSAR 64 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QL 136 RV + + + + + + V PF S + CN +KF +L + Q+ Sbjct: 65 RVAEHLKIELVGINCVKEYWTEVFEPFLESTQNANSFNIDQLCNERIKFDAMLKKAKDQI 124 Query: 137 GADVLATGHY--IRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATT----------Q 182 D ATGHY IR VG RR + L T + Sbjct: 125 HFDKFATGHYASIRKVEPVGQKLIATSRRCLSESTCFRTQNESTLSKTKRSISHGSARHK 184 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVV 232 ++ + FPLG + K V+ +A E GL+ +A +S +CF+ + + D + Sbjct: 185 SRMIRVIFPLGSLNKNVVKAIATENGLEALAMARESMGVCFIGKRRMSDFL 235 >gi|237800552|ref|ZP_04589013.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023412|gb|EGI03469.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. oryzae str. 1_6] Length = 184 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 55/180 (30%), Positives = 88/180 (48%), Gaps = 18/180 (10%) Query: 212 ADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLG 271 A K DS ICF+ + ++ D +++ A G+I G+++GRHNG++ +TIGQR+GLG Sbjct: 3 AKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTTGEVIGRHNGLMYHTIGQRQGLG 60 Query: 272 V-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDG 323 + A +P +V+ D ++ +IVG L + EI W+ Sbjct: 61 IGGLKDASDDPWYVLVKDLGANELIVGQGNDHPWLFSSALVSSEIYWVNPVDLSTPR--- 117 Query: 324 FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 + K+R Q P +++ DG F+ + V GQ+ VFY D LGGG+I Sbjct: 118 -RLTAKVRYRQGDQPCTLEKTADGYRAIFDDPQRAVTPGQSVVFYDGDI----CLGGGVI 172 >gi|153855260|ref|ZP_01996426.1| hypothetical protein DORLON_02440 [Dorea longicatena DSM 13814] gi|149752259|gb|EDM62190.1| hypothetical protein DORLON_02440 [Dorea longicatena DSM 13814] Length = 86 Score = 77.8 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 38/78 (48%), Positives = 53/78 (67%), Gaps = 2/78 (2%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + A + G CC V DARRV Sbjct: 5 KVVVGMSGGVDSSVAAWLLKNQGYDVIGVTMQIWQDEEEAAMEEHGGCCGLSAVDDARRV 64 Query: 80 CDTINVSHYVFDYEERFR 97 +++ +YV ++++ F+ Sbjct: 65 AAALDIPYYVMNFKKEFK 82 >gi|81673663|gb|AAI09775.1| TRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Bos taurus] Length = 263 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 66/218 (30%), Positives = 102/218 (46%), Gaps = 22/218 (10%) Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVV--- 232 L Q+ L FPLG++ K+ V+ +A E L + K +S ICF+ + + + + Sbjct: 23 LGTVPQEALRRTLFPLGELTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNFENFILEY 82 Query: 233 --KRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRV 290 R I++E + ++LG H G YT+GQR +G + EP +VV D V Sbjct: 83 LQPRPGRFISIE------DNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVDKDGAKGDV 135 Query: 291 IVGPR-ESLEVHRIYLR--EINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDD 346 +V PR + ++R LR ++W+ + V D +C + R VP + N D Sbjct: 136 LVAPRTDHPALYRDLLRTGRVHWIAEEPTAALVRDKMMECHFRFRHQMALVPCVLTLNQD 195 Query: 347 G-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 G V+V K+ +A GQ VFY D LG G I Sbjct: 196 GTVWVTAVKAVRALAPGQFAVFYKGDE----CLGSGKI 229 >gi|256752920|ref|ZP_05493753.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter ethanolicus CCSD1] gi|256748200|gb|EEU61271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter ethanolicus CCSD1] Length = 151 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 9/143 (6%) Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302 G+ ++G+ LG H GII+YTIGQRRGLG++ PL+VV +D ++ V+VG +E + Sbjct: 13 GEFRDVHGKFLGYHKGIIHYTIGQRRGLGLSSDRPLYVVDIDVKNNVVVVGHQEDVWGEE 72 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIR-SSQDPVPVFVQRNDDGVYVDFEKSEVGVAS 361 + N++ E + K KIR ++++ + +D V V F K + + Sbjct: 73 LISSNNNFISIEKLEKEM----KVTAKIRYTAKEEEAIIKPYEEDKVLVKFLKPQRAITP 128 Query: 362 GQACVFYTSDSNEARVLGGGIIS 384 GQ+ VFY D V+GGGII Sbjct: 129 GQSVVFYDKDV----VVGGGIIE 147 >gi|126920887|gb|AAI33484.1| TRMU protein [Bos taurus] Length = 858 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 65/213 (30%), Positives = 101/213 (47%), Gaps = 22/213 (10%) Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVV-----KRI 235 Q+ L FPLG++ K+ V+ +A E L + K +S ICF+ + + + + R Sbjct: 623 QEALRRTLFPLGELTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNFENFILEYLQPRP 682 Query: 236 NAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR 295 I++E + ++LG H G YT+GQR +G + EP +VV D V+V PR Sbjct: 683 GRFISIE------DNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVDKDGAKGDVLVAPR 735 Query: 296 -ESLEVHRIYLR--EINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYV 350 + ++R LR ++W+ + V D +C + R VP + N DG V+V Sbjct: 736 TDHPALYRDLLRTGRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWV 795 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 K+ +A GQ VFY D LG G I Sbjct: 796 TAVKAVRALAPGQFAVFYKGD----ECLGSGKI 824 >gi|88803300|ref|ZP_01118826.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Polaribacter irgensii 23-P] gi|88780866|gb|EAR12045.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Polaribacter irgensii 23-P] Length = 239 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 112/234 (47%), Gaps = 46/234 (19%) Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL- 248 FP+G++ K VR +A++ L A+K DSQ +CF+ + + + +++ EG+I+ + Sbjct: 13 FPIGELTKPEVRAIAKQADLITAEKKDSQGLCFIGKVRLPEFLQQKLQ--PKEGEIIKIP 70 Query: 249 --------------------------------NGQILGRHNGIINYTIGQRRGLGV-AMG 275 +G+++G+H G +T GQR+GL V Sbjct: 71 SDFSQYKRHVPEFENKECELEYFATKFAYAAEDGKVVGKHQGAHYFTKGQRKGLDVGGTK 130 Query: 276 EPLFVVYLDKNSSRVIVGPRESLE-VHRIYL----REINWLGDGLFEDAVVDGFKCFVKI 330 E L+V+ D N++ + G ++ + ++R L +EI+W+ L A+ + + +I Sbjct: 131 EALYVIETDVNTNIIYTGEGKNHQGLYRNVLFVSNKEIHWIRKDLI-LAIGENLRVEARI 189 Query: 331 RSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 R Q + + + G+YV+FE + + GQ +Y ++ +LG G+IS Sbjct: 190 RYRQTLEKAVLYKVEKGMYVEFENKQSAIQEGQFVAWYQNEE----LLGSGVIS 239 >gi|289807026|ref|ZP_06537655.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 108 Score = 75.5 bits (184), Expect = 2e-11, Method: Composition-based stats. Identities = 39/97 (40%), Positives = 59/97 (60%), Gaps = 5/97 (5%) Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY+R +GK R + R +D +DQSYFL+ +Q+ FP+G+++K Sbjct: 1 ADYIATGHYVRR---ADVNGKSR--LLRGLDGNKDQSYFLYTLGHEQIAQSLFPVGELEK 55 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234 VR +A ++GL A K DS ICF+ + K+ D + R Sbjct: 56 PQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGR 92 >gi|196020529|ref|XP_002119101.1| hypothetical protein TRIADDRAFT_63064 [Trichoplax adhaerens] gi|190576957|gb|EDV18413.1| hypothetical protein TRIADDRAFT_63064 [Trichoplax adhaerens] Length = 116 Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 72/119 (60%), Gaps = 8/119 (6%) Query: 266 QRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFK 325 QR+G+G++ +PL+V+ +D +++VIVG +E L+ ++ ++++NWL + ++A+ Sbjct: 1 QRKGIGISNNKPLYVIKIDPITNKVIVGEKEDLKSTKLKIKDLNWLSN---DEALEKDIS 57 Query: 326 CFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 C V++RS+ + V+ +G+ V + G+ GQACV Y D RVLGGG I Sbjct: 58 CSVRLRSNHKEINADVKYLGNGIADVILKSPYYGITPGQACVIYDKD----RVLGGGWI 112 >gi|218754787|ref|ZP_03533583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium tuberculosis GM 1503] Length = 85 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 40/85 (47%), Positives = 56/85 (65%), Gaps = 3/85 (3%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84 MSGGVDSSV AA + G++V+GV + L ++ + R GS CC+ +D DARRV D + Sbjct: 1 MSGGVDSSVAAARMVDAGHEVVGVHMAL-STAPGTLRTGSRGCCSKEDAADARRVADVLG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYA 109 + YV+D+ E+F+ VI F SSYA Sbjct: 60 IPFYVWDFAEKFKEDVINDFVSSYA 84 >gi|119593830|gb|EAW73424.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase, isoform CRA_c [Homo sapiens] Length = 281 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 98/208 (47%), Gaps = 28/208 (13%) Query: 190 FPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVV-----KRINAGIALEG 243 FPLG + KE V+ +A E L + K +S +CF+ + + + R I++E Sbjct: 50 FPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFISIE- 108 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHR 302 + ++LG H G YT+GQR +G + EP +VV D V V PR + ++R Sbjct: 109 -----DNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVAPRTDHPALYR 162 Query: 303 IYLR--EINWLGD----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355 LR ++W+ + L D +++ C + R VP + N DG V+V ++ Sbjct: 163 DLLRTSRVHWIAEEPPAALVRDKMME---CHFRFRHQMALVPCVLTLNQDGTVWVTAVQA 219 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383 +A+GQ VFY D LG G I Sbjct: 220 VRALATGQFAVFYKGDE----CLGSGKI 243 >gi|116283770|gb|AAH27991.1| TRMU protein [Homo sapiens] Length = 267 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/208 (29%), Positives = 98/208 (47%), Gaps = 28/208 (13%) Query: 190 FPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVV-----KRINAGIALEG 243 FPLG + KE V+ +A E L + K +S +CF+ + + + R I++E Sbjct: 36 FPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFISIE- 94 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHR 302 + ++LG H G YT+GQR +G + EP +VV D V V PR + ++R Sbjct: 95 -----DNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVAPRTDHPALYR 148 Query: 303 IYLR--EINWLGD----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355 LR ++W+ + L D +++ C + R VP + N DG V+V ++ Sbjct: 149 DLLRTSRVHWIAEEPPAALVRDKMME---CHFRFRHQMALVPCVLTLNQDGTVWVTAVQA 205 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383 +A+GQ VFY D LG G I Sbjct: 206 VRALATGQFAVFYKGDE----CLGSGKI 229 >gi|224419183|ref|ZP_03657189.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter canadensis MIT 98-5491] Length = 155 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 81/160 (50%), Gaps = 13/160 (8%) Query: 229 FDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNS 287 DV+K+ + +GD++ G +G H G + YTIG+R+G + P +V+ ++ Sbjct: 1 MDVLKK-HHKTEQKGDVLDSKGNKIGTHKGYMQYTIGKRKGFTIKGALTPHYVLKINPQD 59 Query: 288 SRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV----QR 343 + +I G +E L +++ ++ + ++ V+D C VKIR +P + Sbjct: 60 NTIIAGSKEELATNKVQALNLSLPKEWFQDNKVLD---CEVKIRYKSHKIPAQITLMSNG 116 Query: 344 NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 N D + + ++S GVA+GQA V Y N VLGGG I Sbjct: 117 NQDIITANLKESAYGVANGQALVLY----NGNEVLGGGFI 152 >gi|68073255|ref|XP_678542.1| hypothetical protein [Plasmodium berghei strain ANKA] gi|56499041|emb|CAH96244.1| conserved hypothetical protein [Plasmodium berghei] Length = 750 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 52/234 (22%), Positives = 102/234 (43%), Gaps = 48/234 (20%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +V +SGG+DS + LL++ + D YN C+ D+ + + Sbjct: 379 KVAHMLSGGIDSLMALILLEKKKFYIDNFYFNFTYYN-----------CSKNDLKYVKNI 427 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA- 138 C N H + +E + N V +P SY+ G+ P P + CN+ +K++ L + + Sbjct: 428 CKNRNNLHIININKEYYEN-VFLPMLRSYSKGQVPNPDIVCNKKIKYNFFLKTIKSMSKL 486 Query: 139 -------DVLATGHY---------------------IRSRLYVGDDGKRRRIMCRPM--- 167 ++TGHY I+ ++ D K+ R C+ + Sbjct: 487 KGKKYNYSYISTGHYAMISTNNPQNCNNIFNNNFPYIKGKMENKDKKKKER--CKLIVSS 544 Query: 168 DLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDIC 221 DL++DQ++FL + +++QL FPL K +R ++ + + ++++ +C Sbjct: 545 DLKKDQTFFLSSFSEKQLSKFLFPLSLYNKNYIRMFMKKNNITNYNPNETKGLC 598 >gi|218754785|ref|ZP_03533581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium tuberculosis GM 1503] Length = 154 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 8/147 (5%) Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEV 300 +V +G +L H+G+ +TIGQRRGLG+A G P +V +D +++ V VG L+V Sbjct: 2 VVDADGVVLASHDGVHGFTIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDV 61 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360 + R + G VD C V++R+ + V + D ++V GVA Sbjct: 62 QTLTGRAPVFTA-GAAPSGPVD---CVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVA 117 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSK 387 GQ V Y D VLG I+G+ Sbjct: 118 RGQTLVLYRPDPAGDEVLGSATIAGAS 144 >gi|170046207|ref|XP_001850666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Culex quinquefasciatus] gi|167869052|gb|EDS32435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Culex quinquefasciatus] Length = 126 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 62/116 (53%), Gaps = 4/116 (3%) Query: 32 DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91 DS+V A LLKR G+DV ++ ++ G C QD DA+++C +++ + Sbjct: 14 DSAVTAYLLKRKGFDVRAAFMKNWD---LIDENGYCSGEQDWLDAQKLCRQLDIPLEQVN 70 Query: 92 YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHY 146 + + + V F Y+AG TP P + CNR +KF+ R+ +GAD + TGHY Sbjct: 71 FVKDYWLEVFGSFLKDYSAGITPNPDMLCNRRIKFNLFNKHARERMGADAIVTGHY 126 >gi|194381158|dbj|BAG64147.1| unnamed protein product [Homo sapiens] Length = 131 Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 34/88 (38%), Positives = 47/88 (53%), Gaps = 1/88 (1%) Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 G C A +D DA RVC +++ + Y + + N V F + Y G TP P + CN+ + Sbjct: 11 GVCTADKDCEDAYRVCQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHI 70 Query: 125 KFSDLLS-VTRQLGADVLATGHYIRSRL 151 KFS LGAD +ATGHY R+ L Sbjct: 71 KFSCFFHYAVDNLGADAIATGHYARTSL 98 >gi|207110357|ref|ZP_03244519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori HPKX_438_CA4C1] Length = 110 Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 40/117 (34%), Positives = 63/117 (53%), Gaps = 8/117 (6%) Query: 251 QILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 +I+G H G + YTIG+R+G + EP FVV +D + ++VG +E L H + + + Sbjct: 1 EIIGTHKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAQNKS 60 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 + D F+ + F+K R PV FV D+ + V+F++ GVA GQA V Sbjct: 61 LMKD--FKSG-----EYFIKARYRSVPVKAFVSLKDEVIEVEFKEPFYGVAKGQALV 110 >gi|156093385|ref|XP_001612732.1| tRNA methyl transferase [Plasmodium vivax SaI-1] gi|148801606|gb|EDL43005.1| tRNA methyl transferase, putative [Plasmodium vivax] Length = 837 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 63/255 (24%), Positives = 112/255 (43%), Gaps = 51/255 (20%) Query: 2 VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61 VVSE + L ++ + RV +SGGVDS + LL+R + V L + Sbjct: 221 VVSELSSLYTIH-----QYPRVAHMLSGGVDSLMALRLLERKKFYVHNFYLHFAHQD--- 272 Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 C+ D+ +++C + ++ + E + V++P SY+ G+ P + CN Sbjct: 273 ------CSKSDLQYVKQICSK-RKNLFIVNVNEEYTEQVLIPMLRSYSEGQIPNADILCN 325 Query: 122 RTVKFSDLLSVTRQL--------GADVLATGHYI---------RSRL------YVGDD-- 156 VK+ L+ R+L ++TGHY +RL YVGD+ Sbjct: 326 EKVKYHLLMRTMRKLCRERGGGWNYSYVSTGHYAMISTNDEANANRLFNGNFPYVGDELD 385 Query: 157 ------GKRRR---IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREM 207 G R+R I+ R D +DQ++FL + +++QL FPL +K V+ + Sbjct: 386 GEIPRRGPRKRYKLIVGR--DERKDQTFFLSSFSEKQLSKFLFPLCLRRKSDVKRIMERR 443 Query: 208 GLDIADKSDSQDICF 222 ++ +++ +C Sbjct: 444 AAGQYNRRETRGLCL 458 >gi|221053929|ref|XP_002261712.1| tRNA methyl transferase [Plasmodium knowlesi strain H] gi|193808172|emb|CAQ38875.1| tRNA methyl transferase, putative [Plasmodium knowlesi strain H] Length = 906 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 55/233 (23%), Positives = 104/233 (44%), Gaps = 42/233 (18%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV +SGGVDS + LL++ + V L + C+ D+ +++C Sbjct: 331 RVAHMLSGGVDSLMALRLLEKKKFYVHNFFLHFAHQE---------CSKSDLRYVKKICS 381 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD-- 139 + ++ + E + V++P SYA G+ P + CN VK++ L+ ++L + Sbjct: 382 K-RKNLFIVNINEEYTEQVLIPMLRSYADGQIPNADIMCNEKVKYNLLMRKMKKLCRERG 440 Query: 140 ------VLATGHYIR---------SRL------YVGD--DGKRRRIMCRP-------MDL 169 ++TGHY ++L YVGD DGK R R D+ Sbjct: 441 GRWDYSYVSTGHYAMISTNDVSNANKLFSGNFPYVGDDTDGKMPRRTPRKRYKLVVGRDV 500 Query: 170 ERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICF 222 ++DQ++FL + +++QL FPL +K ++ + ++ +++ +C Sbjct: 501 KKDQTFFLSSLSEEQLSKFLFPLCLHRKSDIKMVMERREAGKYNQRETRGLCL 553 >gi|70952350|ref|XP_745349.1| hypothetical protein [Plasmodium chabaudi chabaudi] gi|56525644|emb|CAH76839.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi] Length = 601 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 52/234 (22%), Positives = 101/234 (43%), Gaps = 47/234 (20%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V +SGG+DS + LL++ + V + C+ D+ + +C Sbjct: 260 KVAHMLSGGIDSLMALILLEKKKFYVDNFYFNFAHYD---------CSKNDLKYVKNICK 310 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL----SVTRQLG 137 N H + E + N V +P SY+ GE P P + CN+ +K++ LL S+++ G Sbjct: 311 NRNNLHIININNEYYEN-VFLPMLKSYSKGEVPNPDIVCNQKIKYNFLLKTIKSISKSKG 369 Query: 138 ADV----LATGHYIRSRLYVGDDGKR--------------------------RRIMCRPM 167 D ++TGHY + +D + R + Sbjct: 370 TDFNYSYISTGHY---AMISTNDAQNCNNIFNNNFPYVKGKMGNKKNKKNKKRYKLVVSS 426 Query: 168 DLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDIC 221 DL++DQ++FL + +++QL FPLG K ++ ++ + + ++++ +C Sbjct: 427 DLKKDQTFFLSSFSEKQLSKFLFPLGLYNKNDIKTFMKKHNITDYNPNETKGLC 480 >gi|313142687|ref|ZP_07804880.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter canadensis MIT 98-5491] gi|313131718|gb|EFR49335.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter canadensis MIT 98-5491] Length = 140 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 12/139 (8%) Query: 250 GQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 G +G H G + YTIG+R+G + P +V+ ++ + +I G +E L +++ + Sbjct: 6 GNKIGTHKGYMQYTIGKRKGFTIKGALTPHYVLKINPQDNTIIAGSKEELATNKVQALNL 65 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVP----VFVQRNDDGVYVDFEKSEVGVASGQA 364 + + ++ V+D C VKIR +P + N D + + ++S GVA+GQA Sbjct: 66 SLPKEWFQDNKVLD---CEVKIRYKSHKIPAQITLMSNGNQDIITANLKESAYGVANGQA 122 Query: 365 CVFYTSDSNEARVLGGGII 383 V Y N VLGGG I Sbjct: 123 LVLY----NGNEVLGGGFI 137 >gi|213850128|ref|ZP_03381026.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 116 Score = 66.6 bits (161), Expect = 7e-09, Method: Composition-based stats. Identities = 41/117 (35%), Positives = 65/117 (55%), Gaps = 5/117 (4%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + ++PK +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ Sbjct: 1 MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADL 55 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 56 ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFL 112 >gi|289763200|ref|ZP_06522578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium tuberculosis GM 1503] gi|289710706|gb|EFD74722.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium tuberculosis GM 1503] Length = 251 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/204 (29%), Positives = 91/204 (44%), Gaps = 14/204 (6%) Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVH 247 FP+GD K +R A + F+ G K F + +RI G +V Sbjct: 46 FPIGDTPKRQIRAEAAAAAWRSPTSRIATTSAFIPSGNTKAF-LGERIGV---RRGVVVD 101 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 +G +L H+G+ +TIGQRRGLG+A G P +V +D +++ V VG L+V + Sbjct: 102 ADGVVLASHDGVHGFTIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTL 161 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 R + G VD C V++R+ + V + D ++V GVA GQ Sbjct: 162 TGRAPVFTA-GAAPSGPVD---CVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQ 217 Query: 364 ACVFYTSDSNEARVLGGGIISGSK 387 V Y D VLG I+G+ Sbjct: 218 TLVLYRPDPAGDEVLGSATIAGAS 241 >gi|289803739|ref|ZP_06534368.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 109 Score = 65.9 bits (159), Expect = 1e-08, Method: Composition-based stats. Identities = 40/113 (35%), Positives = 64/113 (56%), Gaps = 5/113 (4%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + ++PK +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ Sbjct: 1 MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEY---CTAAADL 55 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF Sbjct: 56 ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKF 108 >gi|49471691|gb|AAT66133.1| tRNA (5-methylaminomethyl-2-thiouridyl-methyltransferase-like protein [Mycoplasma arthritidis] Length = 109 Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 57/106 (53%), Gaps = 7/106 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 RVV+ MSGGVDSSV A LL++ GY+V+G+ ++ ++S + G+ C QD Sbjct: 4 RVVLGMSGGVDSSVCAYLLQQQGYEVVGLFMRNWDSFLNNDFLGNEAISQDVCPQEQDYV 63 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 DA+ V +N+ Y D+ + + + V Y G TP P + C Sbjct: 64 DAKEVAKQLNIPLYRVDFIKEYWDHVFSYLIEEYKIGRTPNPDIFC 109 >gi|229025856|ref|ZP_04182254.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH1272] gi|228735467|gb|EEL86064.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH1272] Length = 190 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 57/177 (32%), Positives = 82/177 (46%), Gaps = 19/177 (10%) Query: 214 KSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV- 272 K DS ICF+ + + D + N A G + L+G++ G+H+G++ YTIGQR GLG+ Sbjct: 12 KKDSTGICFIGERNFKDFLS--NYLPAQPGVMQTLSGEVKGKHDGLMYYTIGQRHGLGIG 69 Query: 273 AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE-----INWLGDGLFEDAVVDGFKCF 327 G+P F V KN I+ + +Y E + W+ + E FKC Sbjct: 70 GNGDPWFAV--GKNLKENILYVDQGFHNELLYGDEVIATNVGWVSNKAKETE----FKCT 123 Query: 328 VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 K R Q V VQ D+ V + ++ + GQA VFY D LGG I Sbjct: 124 AKFRYRQADNKVTVQIVDENTVRILCDEPIRAITPGQAVVFYDGD----ECLGGATI 176 >gi|72392431|ref|XP_847016.1| tRNA-methyl transferase [Trypanosoma brucei TREU927] gi|62358954|gb|AAX79404.1| tRNA-methyl transferase, putative [Trypanosoma brucei] gi|70803046|gb|AAZ12950.1| tRNA-methyl transferase, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 557 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 27/187 (14%) Query: 62 KRKGSCCAGQDVYDARRVCDTINV-----SHYVFDYEERFRNAVIVPFASSYAAGETPLP 116 +R+ A QD +DA V + + +F++ + + +SYA G T Sbjct: 113 RRRWCEAAEQDYHDAAEVARFAGLLSESEALPLFNFSSHYVTSCFDRMLNSYARGNTLNV 172 Query: 117 CVDCNRTVKFSDLLSVTRQLG-ADVLATGHYIRSRLYVGD------------DGKRRRIM 163 V CN +KF LL G A +ATGHY R+ + + D +G+ R++ Sbjct: 173 DVLCNSEIKFGALLHALHTSGRAQYVATGHYART-ISLADTVFCSAAASESGNGRYTRVI 231 Query: 164 CRPM----DLERDQSYFLFATTQQQLCDLRFPLGDM--KKESVRDLAREMGLD-IADKSD 216 RP DL DQ+ FL +Q QL ++ FPLG + +K VR +A +GL ++ K Sbjct: 232 ARPFTAGQDLN-DQTLFLSRLSQLQLSNVIFPLGHVFQRKADVRVVASHLGLTRVSAKKT 290 Query: 217 SQDICFV 223 S +CFV Sbjct: 291 STGLCFV 297 >gi|126654200|ref|ZP_01726001.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Bacillus sp. B14905] gi|126589339|gb|EAZ83493.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Bacillus sp. B14905] Length = 160 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 74/147 (50%), Gaps = 9/147 (6%) Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESL 298 A G++ + G ++G+H+G++ YT+GQR GLG+ GEP FV+ D + ++VG + Sbjct: 6 AQPGNMETMYGVVMGKHDGLMYYTLGQRHGLGIGGDGEPWFVLGKDLERNVLLVG--QGF 63 Query: 299 EVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSE 356 + +Y ++ + + G F C K R Q PV V+ DG ++ F + Sbjct: 64 DNEHLYSTSLSAVKMNYTSTKKLPGKFSCTAKFRYRQTDTPVEVEILADGRTHITFAEPV 123 Query: 357 VGVASGQACVFYTSDSNEARVLGGGII 383 + GQA V Y D E +GGG I Sbjct: 124 RAITPGQAVVLY--DGEEC--IGGGTI 146 >gi|261330212|emb|CBH13196.1| tRNA-methyl transferase, putative [Trypanosoma brucei gambiense DAL972] Length = 557 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 56/187 (29%), Positives = 88/187 (47%), Gaps = 27/187 (14%) Query: 62 KRKGSCCAGQDVYDARRVCDTINV-----SHYVFDYEERFRNAVIVPFASSYAAGETPLP 116 +R+ A QD +DA V + + +F++ + + +SYA G T Sbjct: 113 RRRWCEAAEQDYHDAAEVARFAGLLSESEALPLFNFSSHYVTSCFDRMLNSYARGNTLNV 172 Query: 117 CVDCNRTVKFSDLLSVTRQLG-ADVLATGHYIRSRLYVGD------------DGKRRRIM 163 V CN +KF LL G A +ATGHY R+ + + D +G+ R++ Sbjct: 173 DVLCNSEIKFGALLHALHTSGRAQYVATGHYART-ISLADTVFCSAAASESGNGRYTRVI 231 Query: 164 CRPM----DLERDQSYFLFATTQQQLCDLRFPLGDM--KKESVRDLAREMGLD-IADKSD 216 RP DL DQ+ FL ++ QL ++ FPLG + +K VR +A +GL ++ K Sbjct: 232 ARPFTAGQDLN-DQTLFLSRLSRLQLSNVIFPLGHVFQRKADVRVVASHLGLTRVSAKKT 290 Query: 217 SQDICFV 223 S +CFV Sbjct: 291 STGLCFV 297 >gi|260889734|ref|ZP_05900997.1| tRNA methyl transferase [Leptotrichia hofstadii F0254] gi|260860340|gb|EEX74840.1| tRNA methyl transferase [Leptotrichia hofstadii F0254] Length = 135 Score = 60.1 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 48/140 (34%), Positives = 68/140 (48%), Gaps = 18/140 (12%) Query: 252 ILGRHNGIINYTIGQRRGLGV-----AMGEPLFVV--YLDKNSSRVIVGPRESLEVHRIY 304 +LG HNG++ YTIGQR+G+G+ GEP FVV L+KN V G L + Sbjct: 1 MLGHHNGLMYYTIGQRKGIGIGNTKEGTGEPWFVVDKDLEKNELIVTQGDNSVLYSKGLI 60 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 + N++ + F +C VK R Q D V + N++ V F++ + V GQ Sbjct: 61 ATDFNFINEVRFP------LECTVKFRYRQKDTKAVINKLNENEYEVIFDEPQKAVTLGQ 114 Query: 364 ACVFYTSDSNEARVLGGGII 383 V Y + LGGGII Sbjct: 115 IVVAYDGEI----CLGGGII 130 >gi|119593831|gb|EAW73425.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase, isoform CRA_d [Homo sapiens] Length = 203 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 69/143 (48%), Gaps = 16/143 (11%) Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLR- 306 + ++LG H G YT+GQR +G + EP +VV D V V PR + ++R LR Sbjct: 31 DNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVAPRTDHPALYRDLLRT 89 Query: 307 -EINWLGD----GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360 ++W+ + L D +++ C + R VP + N DG V+V ++ +A Sbjct: 90 SRVHWIAEEPPAALVRDKMME---CHFRFRHQMALVPCVLTLNQDGTVWVTAVQAVRALA 146 Query: 361 SGQACVFYTSDSNEARVLGGGII 383 +GQ VFY D LG G I Sbjct: 147 TGQFAVFYKGDE----CLGSGKI 165 >gi|157864414|ref|XP_001680917.1| tRNA-methyl transferase [Leishmania major strain Friedlin] gi|68124210|emb|CAJ06972.1| putative tRNA-methyl transferase [Leishmania major strain Friedlin] Length = 603 Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/197 (30%), Positives = 83/197 (42%), Gaps = 24/197 (12%) Query: 32 DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ-DVYDARRVCDTINV----- 85 + S+ AA D V + N S G C Q D DA++V T+++ Sbjct: 80 EPSITAA--SYDAAPVQHTPFFMRNWHDDSAASGWCVRAQVDYDDAQQVARTLDLLPRDG 137 Query: 86 -SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA----DV 140 +D + ++YAAG T V CN +KF L R+ G+ + Sbjct: 138 TPLPWYDLSSEYVEQCFERMLAAYAAGHTLNVDVLCNSKIKFGALTRALRRTGSVFSETL 197 Query: 141 LATGHYIRSR-----LYVGDDGKRRRI-MCRPMDLER---DQSYFLFATTQQQLCDLRFP 191 LATGHY R+ ++ GDD KRR + + RP R DQ+ FL L FP Sbjct: 198 LATGHYARTWDLPHGVHGGDDAKRRPVLLVRPCSAGRDLNDQTVFLSRVPPSALATAIFP 257 Query: 192 LGDM--KKESVRDLARE 206 LG + K VR LAR Sbjct: 258 LGHLFTCKADVRALARH 274 >gi|83776736|gb|ABC46690.1| mitochondrial 5-methylaminomethyl-2-thiouridylate-methyltransferase precursor transcript variant 1 [Homo sapiens] gi|83776738|gb|ABC46691.1| mitochondrial 5-methylaminomethyl-2-thiouridylate-methyltransferase precursor transcript variant 2 [Homo sapiens] Length = 99 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 32/80 (40%), Positives = 46/80 (57%), Gaps = 3/80 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV A+SGGVDS+V A LL+R GY V GV ++ ++S G C A +D DA RVC Sbjct: 6 HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDS---LDEHGVCTADKDCEDAYRVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVI 101 +++ + Y + + N V Sbjct: 63 ILDIPFHQVSYVKEYWNDVF 82 >gi|258597066|ref|XP_001347476.2| tRNA methyltransferase, putative [Plasmodium falciparum 3D7] gi|254922434|gb|AAN35389.2| tRNA methyltransferase, putative [Plasmodium falciparum 3D7] Length = 1084 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/139 (23%), Positives = 61/139 (43%), Gaps = 23/139 (16%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+ +SGGVDS + LL+R + V N+ C+ D+ + +C Sbjct: 449 RIAHMLSGGVDSLMALHLLERKKFYVDNYFFNFTNAD---------CSKNDIKYVKDICK 499 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL----- 136 + ++ + + + + V+VP YA G+ P P + CN+ +K++ L V + + Sbjct: 500 NNKRNLFIININDEYFDEVLVPMLFFYADGKVPNPDIMCNQKIKYNFFLKVIKSIYKQKW 559 Query: 137 ---------GADVLATGHY 146 D ++TGHY Sbjct: 560 NYRTKSKLCNYDFISTGHY 578 >gi|82594890|ref|XP_725616.1| tRNA-methyltransferase [Plasmodium yoelii yoelii str. 17XNL] gi|23480689|gb|EAA17181.1| probable tRNA-methyltransferase [Plasmodium yoelii yoelii] Length = 782 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 48/243 (19%), Positives = 93/243 (38%), Gaps = 55/243 (22%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGY--DVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +V +SGGVDS + LL++ + D YN C+ D+ + + Sbjct: 377 KVAHMLSGGVDSLMALILLEKKKFYIDNFYFNFTHYN-----------CSKNDLKYVKNI 425 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV------- 132 C N H + E + N V +P SY+ G+ P P + CN+ +K++ L Sbjct: 426 CKNRNNLHIININNEYYEN-VFLPMLRSYSKGQVPNPDIVCNKKIKYNFFLKTIKKMSKI 484 Query: 133 -TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPM------------------------ 167 ++ ++TGHY ++ P Sbjct: 485 KGKKFNYAYISTGHYAMISTNNSENCNNLFNNNFPYIKGKNEKKIKNKNINKIKDKNKIR 544 Query: 168 ---------DLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQ 218 DL++DQ++FL + +++QL FPL K ++ ++ + + ++++ Sbjct: 545 ERCKLVVSNDLKKDQTFFLSSFSEKQLSKFLFPLSLYNKNYIKLFMKKNNITNYNPNETK 604 Query: 219 DIC 221 +C Sbjct: 605 GLC 607 >gi|83776740|gb|ABC46692.1| mitochondrial 5-methylaminomethyl-2-thiouridylate-methyltransferase precursor transcript variant 3 [Homo sapiens] Length = 99 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 3/80 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV ++SGGVDS+V A LL+R GY V GV ++ ++S G C A +D DA RVC Sbjct: 6 HVVCSLSGGVDSAVAALLLRRRGYQVTGVFMKNWDS---LDEHGVCTADKDCEDAYRVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVI 101 +++ + Y + + N V Sbjct: 63 ILDIPFHQVSYVKEYWNDVF 82 >gi|213857827|ref|ZP_03384798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 89 Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 6/89 (6%) Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRINAGIALEGDIVHL 248 P+GD K +R A GL +A+K DS DICF+ G K F + +RI G +V Sbjct: 1 PIGDTPKRQIRAEAARRGLAVANKPDSHDICFIPSGNTKAF-LGERIG---VRRGVVVDA 56 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEP 277 +G +L H+G+ +TIGQRRGLG+A P Sbjct: 57 DGVVLASHDGVHGFTIGQRRGLGIAGPGP 85 >gi|160943988|ref|ZP_02091218.1| hypothetical protein FAEPRAM212_01489 [Faecalibacterium prausnitzii M21/2] gi|158444664|gb|EDP21668.1| hypothetical protein FAEPRAM212_01489 [Faecalibacterium prausnitzii M21/2] gi|295104809|emb|CBL02353.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Faecalibacterium prausnitzii SL3/3] Length = 180 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 30/185 (16%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V+M G VD VV +L++ G+ V G +QL + A AR+ + Sbjct: 19 KVLVSMDGSVDCGVVVRILQQQGFGVAGAVVQLAADQSAWAAA-----------ARQAAE 67 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + V E A + P + +F+ LL+ +LG + Sbjct: 68 ALGIECIVLKAE---------------ALADQPAEVLGSGNDARFAALLTAADKLGIQYI 112 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGH+ R L G DG +C +D D+S L A Q L L PLG+ V+ Sbjct: 113 ATGHHARVEL--GSDGVHT--VCPAVDAALDESAALAALPQDTLARLLLPLGEFTAADVQ 168 Query: 202 DLARE 206 ++A++ Sbjct: 169 EMAQD 173 >gi|207092518|ref|ZP_03240305.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori HPKX_438_AG0C1] Length = 81 Score = 54.7 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 53/90 (58%), Gaps = 12/90 (13%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY--DARR 78 M++ V +SGGVDSS A LK G++++G+ L+L+ S K D+Y +A++ Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK----------HDLYIKNAQK 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSY 108 C+ + + V D+++ F++AV F ++Y Sbjct: 51 ACEFLGIPLEVLDFQKDFKSAVYDEFINAY 80 >gi|51593662|gb|AAH80631.1| TRMU protein [Homo sapiens] Length = 222 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 16/133 (12%) Query: 190 FPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVV-----KRINAGIALEG 243 FPLG + KE V+ +A E L + K +S +CF+ + + + R I++E Sbjct: 36 FPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQPRPGHFISIE- 94 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHR 302 + ++LG H G YT+GQR +G + EP +VV D V V PR + ++R Sbjct: 95 -----DNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVAPRTDHPALYR 148 Query: 303 IYLR--EINWLGD 313 LR ++W+ + Sbjct: 149 DLLRTSRVHWIAE 161 >gi|257387062|ref|YP_003176835.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Halomicrobium mukohataei DSM 12286] gi|257169369|gb|ACV47128.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Halomicrobium mukohataei DSM 12286] Length = 289 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/192 (28%), Positives = 80/192 (41%), Gaps = 40/192 (20%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V++A SGGVDSSVVAAL +D +G + A K ++ DA RV D Sbjct: 21 VLIAFSGGVDSSVVAAL----AHDALG------DDAVACTAKSETLPEAELVDANRVADE 70 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + H + ++ E A + C C R+++ S + R+LG DV+ Sbjct: 71 IGIRHEIVEFSELDSEAFV---------ANDDERCYHC-RSMRLSAMYDEARRLGIDVVC 120 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 G D G+ R R ++ S L D+ KE VR+ Sbjct: 121 DG------TNASDPGEGHRPGLRAVEELNAYSPLLE--------------HDITKEEVRE 160 Query: 203 LAREMGLDIADK 214 +ARE L +ADK Sbjct: 161 IAREYDLSVADK 172 >gi|322496678|emb|CBZ31747.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 613 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 57/116 (49%), Gaps = 15/116 (12%) Query: 106 SSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA----DVLATGHYIRSR-----LYVGDD 156 ++YAAG T V CN +KF L R+ G+ +LATGHY R+ ++ GD+ Sbjct: 159 AAYAAGHTLNVDVLCNSKIKFGALTRALRRTGSAFSETLLATGHYARTWDLPRGVHGGDN 218 Query: 157 GKRRRI-MCRPMDLER---DQSYFLFATTQQQLCDLRFPLGDM--KKESVRDLARE 206 KRR + + RP R DQ+ FL L FPLG + K VR LAR Sbjct: 219 AKRRLVLLVRPCSAGRDLNDQTVFLSRVPPSALATAIFPLGHLFTCKADVRALARH 274 >gi|321398957|emb|CAM65601.2| putative tRNA-methyl transferase [Leishmania infantum JPCM5] Length = 613 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 57/116 (49%), Gaps = 15/116 (12%) Query: 106 SSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA----DVLATGHYIRSR-----LYVGDD 156 ++YAAG T V CN +KF L R+ G+ +LATGHY R+ ++ GD+ Sbjct: 159 AAYAAGHTLNVDVLCNSKIKFGALTRALRRTGSAFSETLLATGHYARTWDLPRGVHGGDN 218 Query: 157 GKRRRI-MCRPMDLER---DQSYFLFATTQQQLCDLRFPLGDM--KKESVRDLARE 206 KRR + + RP R DQ+ FL L FPLG + K VR LAR Sbjct: 219 AKRRLVLLVRPCSAGRDLNDQTVFLSRVPPSALATAIFPLGHLFTCKADVRALARH 274 >gi|257438705|ref|ZP_05614460.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Faecalibacterium prausnitzii A2-165] gi|257198840|gb|EEU97124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Faecalibacterium prausnitzii A2-165] Length = 170 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 81/193 (41%), Gaps = 49/193 (25%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV-- 79 +V+V + GG +L++ G+ V+G ++L C V DA + Sbjct: 19 KVLVGLCGGTGCKAAVRILQQQGFAVMGAVVRL-------------CTDDPVVDAAKEAA 65 Query: 80 ------CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 C T+N S +S A ET P ++F LL+ Sbjct: 66 KALGIECITLNASEL-----------------ASQLAEETAAPA-----DLRFPALLAAA 103 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +LG +ATGH R+R+ G DG ++C P ++ D+S L A Q+ L L PLG Sbjct: 104 DRLGIQYIATGH--RARVETGADGVH--VLC-PAEI-ADESARLAALPQETLGRLILPLG 157 Query: 194 DMKKESVRDLARE 206 D E V ++A E Sbjct: 158 DFSPEDVAEMAAE 170 >gi|154332268|ref|XP_001562508.1| tRNA-methyl transferase [Leishmania braziliensis MHOM/BR/75/M2904] gi|134059398|emb|CAM41624.1| putative tRNA-methyl transferase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 593 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 81/200 (40%), Gaps = 30/200 (15%) Query: 54 LYNSRKASKRKGSCCAGQ-DVYDARRVCDTINV------SHYVFDYEERFRNAVIVPFAS 106 ++N G C Q D DA++V T+++ +D+ + Sbjct: 96 MHNWHDDKAASGWCVRAQVDYDDAQQVAKTLDLLPRDGTPLPSYDFSSEYAEQCFERMLD 155 Query: 107 SYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA----DVLATGHYIRS-RLYVGDDG---- 157 +YA G T V CN +KF L R+ G+ +LATGHY R+ L GD G Sbjct: 156 AYAVGHTLNVDVLCNSKIKFGALTRALRRTGSAFSETLLATGHYARTWNLSRGDHGGSNE 215 Query: 158 KRRRIMCRPMDLER---DQSYFLFATTQQQLCDLRFPLGDM--KKESVRDLAREM----- 207 ++ ++ RP R DQS FL L FPLG + K VR LA Sbjct: 216 RQPVLLVRPCSAGRDLNDQSVFLSRVPPSALASAIFPLGHLFTCKADVRALATHSFGHSG 275 Query: 208 GL----DIADKSDSQDICFV 223 G+ I K S ICFV Sbjct: 276 GMAAVAHIPQKKTSTGICFV 295 >gi|55379466|ref|YP_137316.1| tRNA methyl transferase [Haloarcula marismortui ATCC 43049] gi|55232191|gb|AAV47610.1| tRNA methyl transferase [Haloarcula marismortui ATCC 43049] Length = 290 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 80/194 (41%), Gaps = 44/194 (22%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V++A SGGVDSSVVAAL YD +G + A K ++ DA RV + Sbjct: 21 VLIAFSGGVDSSVVAAL----AYDALG------DDAIACTAKSETLPAAELTDATRVAEE 70 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + H + ++ E S + C C R+++ + R+LG D++ Sbjct: 71 IGIRHEIVEFSE---------LDSEEFMQNDDMRCYHC-RSMRLGAMYDRARELGIDIVC 120 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESV 200 G D G+ R R + + D PL D++K V Sbjct: 121 DG------TNASDTGEGHRPGLRAV----------------EELDAYSPLLEHDIEKSEV 158 Query: 201 RDLAREMGLDIADK 214 R++ARE L +ADK Sbjct: 159 REIAREYDLSVADK 172 >gi|322488380|emb|CBZ23626.1| putative tRNA-methyl transferase [Leishmania mexicana MHOM/GT/2001/U1103] Length = 603 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 79/188 (42%), Gaps = 25/188 (13%) Query: 44 GYDVIGVTLQLY---NSRKASKRKGSCCAGQ-DVYDARRVCDTINVSHY------VFDYE 93 GY + V + N + G C Q D DA++V +++ + ++D+ Sbjct: 87 GYAAVPVQYTPFFMRNWHDDNTASGWCVRAQVDYDDAQQVARALDLLPHDGTPLPLYDFS 146 Query: 94 ERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ----LGADVLATGHYIRS 149 + ++YA G T V CN +KF L R+ +LATGHY R+ Sbjct: 147 SEYVEQCFERMLAAYAVGHTLNVDVLCNSKIKFGALTRALRRTRSVFSETLLATGHYART 206 Query: 150 R-----LYVGDDGKRRRI-MCRPMDLER---DQSYFLFATTQQQLCDLRFPLGDM--KKE 198 ++ G+D KRR + + RP R DQ+ FL L FPLG + K Sbjct: 207 WHLPRGVHSGEDAKRRPVLLVRPCSAGRDLNDQTVFLSRVPPSALARAIFPLGHLFTCKA 266 Query: 199 SVRDLARE 206 VR LAR Sbjct: 267 DVRALARH 274 >gi|312971269|ref|ZP_07785447.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 1827-70] gi|42583|emb|CAA41994.1| ORF-15 [Escherichia coli K-12] gi|310336471|gb|EFQ01657.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 1827-70] Length = 133 Score = 52.0 bits (123), Expect = 2e-04, Method: Composition-based stats. Identities = 42/131 (32%), Positives = 66/131 (50%), Gaps = 17/131 (12%) Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLD-KNSSRVIVGPRESLEVHRIYL--REINWLGD 313 +T+GQR+GLG+ EP +VV D +N+ V+ E + + L ++++W+ Sbjct: 3 HTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVDR 62 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDS 372 F + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 63 EPFTGTM----RCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY---- 114 Query: 373 NEARVLGGGII 383 N LGGGII Sbjct: 115 NGEVCLGGGII 125 >gi|313113466|ref|ZP_07799055.1| hypothetical protein HMPREF9436_00903 [Faecalibacterium cf. prausnitzii KLE1255] gi|310624193|gb|EFQ07559.1| hypothetical protein HMPREF9436_00903 [Faecalibacterium cf. prausnitzii KLE1255] Length = 176 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 50/185 (27%), Positives = 80/185 (43%), Gaps = 30/185 (16%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V M G + +V +L++ G+ V G ++L + A D +A++ + Sbjct: 19 KVLVQMDGSRECAVAVRILQQQGFAVAGAAVRLAAEQTA-----------DAENAKKAAE 67 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + V + E A+ A G TPL F+ LL+ +LG + Sbjct: 68 ALGIECIVLNAE-----ALAGQDADVLGEGGTPL----------FAALLTAADKLGMQYV 112 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 AT H R+R+ G DG +C P D S L A Q+ L L PLGD E V Sbjct: 113 ATTH--RARVETGADGVH--TVCPPAGTGSDDSTILAALPQETLARLILPLGDFAPEDVA 168 Query: 202 DLARE 206 ++A + Sbjct: 169 EMAED 173 >gi|253730864|ref|ZP_04865029.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253725399|gb|EES94128.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 70 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 2/59 (3%) Query: 156 DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADK 214 DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K VR +A ++GL A K Sbjct: 8 DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKK 64 >gi|309807684|ref|ZP_07701623.1| tRNA-specific 2-thiouridylase MnmA domain protein [Lactobacillus iners LactinV 01V1-a] gi|308169058|gb|EFO71137.1| tRNA-specific 2-thiouridylase MnmA domain protein [Lactobacillus iners LactinV 01V1-a] Length = 56 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 28/52 (53%), Positives = 35/52 (67%), Gaps = 3/52 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72 +RVVV MSGGVDSSV A LLK GYDV+GV ++ ++ S G C A +D Sbjct: 7 IRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDDTDDS---GVCTATED 55 >gi|110803765|ref|YP_699484.1| argininosuccinate synthase [Clostridium perfringens SM101] gi|110684266|gb|ABG87636.1| thiamin biosynthesis protein ThiI [Clostridium perfringens SM101] Length = 326 Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 20/130 (15%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R + +SGG+DS + A L+K G +VIG+ + Y + +A+R+C Sbjct: 3 RALAMISGGLDSILAAKLIKDQGIEVIGICFKSYFFNEE--------------NAKRMCK 48 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140 I++ V D+ E V P + G+ PC+DC+ +++S L ++ AD Sbjct: 49 QIDMPLEVVDFSEEHFEMVKDP---KHGRGKNMNPCIDCHAMMMRYSGEL--LKKFDADF 103 Query: 141 LATGHYIRSR 150 + TG + R Sbjct: 104 IITGEVLNQR 113 >gi|227364875|ref|ZP_03848921.1| argininosuccinate synthase [Lactobacillus reuteri MM2-3] gi|325682500|ref|ZP_08162017.1| argininosuccinate synthase [Lactobacillus reuteri MM4-1A] gi|227070079|gb|EEI08456.1| argininosuccinate synthase [Lactobacillus reuteri MM2-3] gi|324978339|gb|EGC15289.1| argininosuccinate synthase [Lactobacillus reuteri MM4-1A] Length = 415 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 21/128 (16%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQD--VYDAR 77 ++V+A SGG+D+SV A LK GYDVI + + + +A K KG V DA+ Sbjct: 10 KIVLAYSGGLDTSVAIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGLQVGAWKSVVIDAK 69 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136 R D+ E+F ++P ++A E P V +R + L++V Q Sbjct: 70 R------------DFAEQF----VLPALQAHAMYEQKYPLVSALSRPLIVQKLVAVANQY 113 Query: 137 GADVLATG 144 GA +A G Sbjct: 114 GATAIAHG 121 >gi|227544918|ref|ZP_03974967.1| argininosuccinate synthase [Lactobacillus reuteri CF48-3A] gi|300910054|ref|ZP_07127514.1| argininosuccinate synthase [Lactobacillus reuteri SD2112] gi|227185085|gb|EEI65156.1| argininosuccinate synthase [Lactobacillus reuteri CF48-3A] gi|300892702|gb|EFK86062.1| argininosuccinate synthase [Lactobacillus reuteri SD2112] Length = 415 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 21/128 (16%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQD--VYDAR 77 ++V+A SGG+D+SV A LK GYDVI + + + +A K KG V DA+ Sbjct: 10 KIVLAYSGGLDTSVAIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGLQVGAWKSVVIDAK 69 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136 R D+ E+F ++P ++A E P V +R + L++V Q Sbjct: 70 R------------DFAEQF----VLPALQAHAMYEQKYPLVSALSRPLIVQKLVAVANQY 113 Query: 137 GADVLATG 144 GA +A G Sbjct: 114 GATAIAHG 121 >gi|194467785|ref|ZP_03073771.1| Argininosuccinate synthase [Lactobacillus reuteri 100-23] gi|194452638|gb|EDX41536.1| Argininosuccinate synthase [Lactobacillus reuteri 100-23] Length = 410 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 21/128 (16%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQD--VYDAR 77 ++V+A SGG+D+SV A LK GYDVI + + + +A K KG V DA+ Sbjct: 5 KIVLAYSGGLDTSVAIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGLQVGAWKSVVIDAK 64 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136 R D+ E+F ++P ++A E P V +R + L++V Q Sbjct: 65 R------------DFAEQF----VLPALQAHAMYEQKYPLVSALSRPLIVQKLVAVANQY 108 Query: 137 GADVLATG 144 GA +A G Sbjct: 109 GATAIAHG 116 >gi|227529160|ref|ZP_03959209.1| argininosuccinate synthase [Lactobacillus vaginalis ATCC 49540] gi|227350923|gb|EEJ41214.1| argininosuccinate synthase [Lactobacillus vaginalis ATCC 49540] Length = 421 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 21/128 (16%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQD--VYDAR 77 ++V+A SGG+D+SV A LK GYDVI + + + +A K KG V DA+ Sbjct: 10 KIVLAYSGGLDTSVAIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGKQVGAWKSVVIDAK 69 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136 D+ E+F ++P ++A E P V +R + L++V R+ Sbjct: 70 H------------DFAEQF----VLPALQAHAMYEQKYPLVSALSRPLIVQKLVAVAREY 113 Query: 137 GADVLATG 144 GA +A G Sbjct: 114 GATAIAHG 121 >gi|146077335|ref|XP_001463247.1| tRNA-methyl transferase [Leishmania infantum JPCM5] Length = 332 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 37/103 (35%), Positives = 51/103 (49%), Gaps = 13/103 (12%) Query: 106 SSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA----DVLATGHYIRSR-----LYVGDD 156 ++YAAG T V CN +KF L R+ G+ +LATGHY R+ ++ GD+ Sbjct: 159 AAYAAGHTLNVDVLCNSKIKFGALTRALRRTGSAFSETLLATGHYARTWDLPRGVHGGDN 218 Query: 157 GKRRRI-MCRPMDLER---DQSYFLFATTQQQLCDLRFPLGDM 195 KRR + + RP R DQ+ FL L FPLG + Sbjct: 219 AKRRLVLLVRPCSAGRDLNDQTVFLSRVPPSALATAIFPLGHL 261 >gi|148543962|ref|YP_001271332.1| argininosuccinate synthase [Lactobacillus reuteri DSM 20016] gi|184153357|ref|YP_001841698.1| argininosuccinate synthase [Lactobacillus reuteri JCM 1112] gi|166989392|sp|A5VJH1|ASSY_LACRD RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|229889877|sp|B2G6Y6|ASSY_LACRJ RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|148530996|gb|ABQ82995.1| argininosuccinate synthase [Lactobacillus reuteri DSM 20016] gi|183224701|dbj|BAG25218.1| argininosuccinate synthase [Lactobacillus reuteri JCM 1112] Length = 410 Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 21/128 (16%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQD--VYDAR 77 ++V+A SGG+D+SV A LK GYDVI + + + +A K KG V DA+ Sbjct: 5 KIVLAYSGGLDTSVAIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGLQVGAWKSVVIDAK 64 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136 R D+ E+F ++P ++A E P V +R + L++V Q Sbjct: 65 R------------DFAEQF----VLPALQAHAMYEQKYPLVSALSRPLIVQKLVAVANQY 108 Query: 137 GADVLATG 144 GA +A G Sbjct: 109 GATAIAHG 116 >gi|110799347|ref|YP_696888.1| thiamin biosynthesis protein ThiI [Clostridium perfringens ATCC 13124] gi|110673994|gb|ABG82981.1| thiamin biosynthesis protein ThiI [Clostridium perfringens ATCC 13124] Length = 326 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 20/130 (15%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R + +SGG+DS + A L+K G +VIG+ + Y + +A+R+C Sbjct: 3 RALAMVSGGLDSILAAKLIKDQGIEVIGICFKSYFFNEE--------------NAKRMCK 48 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140 I++ V D+ E V P + G+ PC+DC+ +++S L ++ AD Sbjct: 49 QIDMPLEVVDFSEEHFEMVKDP---KHGRGKNMNPCIDCHAMMMRYSGEL--LKKFDADF 103 Query: 141 LATGHYIRSR 150 + TG + R Sbjct: 104 IITGEVLNQR 113 >gi|18311192|ref|NP_563126.1| hypothetical protein CPE2210 [Clostridium perfringens str. 13] gi|18145875|dbj|BAB81916.1| conserved hypothetical protein [Clostridium perfringens str. 13] Length = 326 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 20/130 (15%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R + +SGG+DS + A L+K G +VIG+ + Y + +A+R+C Sbjct: 3 RALAMVSGGLDSILAAKLIKDQGIEVIGICFKSYFFNEE--------------NAKRMCK 48 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140 I++ V D+ E V P + G+ PC+DC+ +++S L ++ AD Sbjct: 49 QIDMPLEVVDFSEEHFEMVKDP---KHGRGKNMNPCIDCHAMMMRYSGEL--LKKFDADF 103 Query: 141 LATGHYIRSR 150 + TG + R Sbjct: 104 IITGEVLNQR 113 >gi|284163472|ref|YP_003401751.1| tRNA methyl transferase-like protein [Haloterrigena turkmenica DSM 5511] gi|284013127|gb|ADB59078.1| tRNA methyl transferase-like protein [Haloterrigena turkmenica DSM 5511] Length = 313 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 52/194 (26%), Positives = 79/194 (40%), Gaps = 44/194 (22%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V+VA SGGVDSSVVAAL +D +G A K ++ DARRV D Sbjct: 21 VLVAFSGGVDSSVVAAL----AHDALG------EDAVACTAKSETLPEAELEDARRVADE 70 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + H + + E + + C C RT++ ++L R++G + + Sbjct: 71 IGIRHEIVSFSELESDDFVENDDDR---------CYHC-RTMRLGEMLETAREVGVETVC 120 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESV 200 G D G R + + + ++ PL D+ KE V Sbjct: 121 DG------TNADDPGAGHRPGLQAV----------------EELEVHSPLLAHDVTKEEV 158 Query: 201 RDLAREMGLDIADK 214 R++A GL +ADK Sbjct: 159 REIADRYGLSVADK 172 >gi|168213686|ref|ZP_02639311.1| thiamin biosynthesis protein ThiI [Clostridium perfringens CPE str. F4969] gi|169344240|ref|ZP_02865222.1| thiamin biosynthesis protein ThiI [Clostridium perfringens C str. JGS1495] gi|182626249|ref|ZP_02954006.1| thiamin biosynthesis protein ThiI [Clostridium perfringens D str. JGS1721] gi|169297699|gb|EDS79799.1| thiamin biosynthesis protein ThiI [Clostridium perfringens C str. JGS1495] gi|170714850|gb|EDT27032.1| thiamin biosynthesis protein ThiI [Clostridium perfringens CPE str. F4969] gi|177908428|gb|EDT70966.1| thiamin biosynthesis protein ThiI [Clostridium perfringens D str. JGS1721] Length = 326 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 20/130 (15%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R + +SGG+DS + A L+K G +VIG+ + Y + +A+R+C Sbjct: 3 RALAMVSGGLDSILAAKLIKDQGIEVIGICFKSYFFNEE--------------NAKRMCK 48 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140 I++ V D+ E V P + G+ PC+DC+ +++S L ++ AD Sbjct: 49 QIDMPLEVVDFSEEHFEMVKDP---KHGRGKNMNPCIDCHAMMMRYSGEL--LKKFDADF 103 Query: 141 LATGHYIRSR 150 + TG + R Sbjct: 104 IITGEVLNQR 113 >gi|168215839|ref|ZP_02641464.1| thiamin biosynthesis protein ThiI [Clostridium perfringens NCTC 8239] gi|182381995|gb|EDT79474.1| thiamin biosynthesis protein ThiI [Clostridium perfringens NCTC 8239] Length = 326 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 20/130 (15%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R + +SGG+DS + A L+K G +VIG+ + Y + +A+R+C Sbjct: 3 RALAMVSGGLDSILAAKLIKDQGIEVIGICFKSYFFNEE--------------NAKRMCK 48 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140 I++ V D+ E V P + G+ PC+DC+ +++S L ++ AD Sbjct: 49 QIDMPLEVVDFSEEHFEMVKDP---KHGRGKNMNPCIDCHAMMMRYSGEL--LKKFDADF 103 Query: 141 LATGHYIRSR 150 + TG + R Sbjct: 104 IITGEVLNQR 113 >gi|168210139|ref|ZP_02635764.1| thiamin biosynthesis protein ThiI [Clostridium perfringens B str. ATCC 3626] gi|170711808|gb|EDT23990.1| thiamin biosynthesis protein ThiI [Clostridium perfringens B str. ATCC 3626] Length = 326 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 20/130 (15%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R + +SGG+DS + A L+K G +VIG+ + Y + +A+R+C Sbjct: 3 RALAMVSGGLDSILAAKLIKDQGIEVIGICFKSYFFNEE--------------NAKRMCK 48 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140 I++ V D+ E V P + G+ PC+DC+ +++S L ++ AD Sbjct: 49 QIDMPLEVVDFSEEHFEMVKDP---KHGRGKNMNPCIDCHAMMMRYSGEL--LKKFDADF 103 Query: 141 LATGHYIRSR 150 + TG + R Sbjct: 104 IITGEVLNQR 113 >gi|168205553|ref|ZP_02631558.1| thiamin biosynthesis protein ThiI [Clostridium perfringens E str. JGS1987] gi|170662909|gb|EDT15592.1| thiamin biosynthesis protein ThiI [Clostridium perfringens E str. JGS1987] Length = 326 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 20/130 (15%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R + +SGG+DS + A L+K G +VIG+ + Y + +A+R+C Sbjct: 3 RALAMVSGGLDSILAAKLIKDQGIEVIGICFKSYFFNEE--------------NAKRMCK 48 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140 I++ V D+ E V P + G+ PC+DC+ +++S L ++ AD Sbjct: 49 QIDMPLEVVDFSEEHFEMVKDP---KHGRGKNMNPCIDCHAMMMRYSGEL--LKKFDADF 103 Query: 141 LATGHYIRSR 150 + TG + R Sbjct: 104 IITGEVLNQR 113 >gi|327401200|ref|YP_004342039.1| hypothetical protein Arcve_1319 [Archaeoglobus veneficus SNP6] gi|327316708|gb|AEA47324.1| Conserved hypothetical protein CHP00268 [Archaeoglobus veneficus SNP6] Length = 257 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 22/103 (21%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV +A SGGVDS+ +AAL ++ G + I VT+ K A +D+ +A+RV + Sbjct: 15 RVAIAFSGGVDSATLAALCRKWGIEAIAVTV-----------KTDLMAARDLENAKRVAE 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 I + H + + V VP A TP C C +T+ Sbjct: 64 EIGIEHVIVE--------VAVPDA---VLENTPQRCYYCKKTI 95 >gi|223040559|ref|ZP_03610831.1| NAD+ synthetase [Campylobacter rectus RM3267] gi|222878194|gb|EEF13303.1| NAD+ synthetase [Campylobacter rectus RM3267] Length = 264 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 53/202 (26%), Positives = 92/202 (45%), Gaps = 49/202 (24%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83 V+ +SGG+DS+VVAAL K G+D + L ++ +S+R ++ DA ++C + Sbjct: 43 VLGVSGGIDSAVVAALCKCTGFDTHAL---LMPAKHSSER--------NLSDALKLCSDL 91 Query: 84 NVSHYVFDYEERFRNAVIVPFASSYAA--GETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 ++H + + I P S+ A GE PLP ++ +L + R L Sbjct: 92 KITHKIIE---------IQPILESFVAQIGE-PLP------NLRMGNLSARARM----CL 131 Query: 142 ATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 + R + L VG K R++ + T + P+G++ K + Sbjct: 132 LYDYSARVNALVVGTSNKSERMLG-------------YGTIYGDMACALNPIGELFKTEI 178 Query: 201 RDLAREMGLD--IADKSDSQDI 220 +LARE+G+D I K+ S D+ Sbjct: 179 YELARELGIDEKIIAKAPSADL 200 >gi|149133681|gb|ABR21024.1| tRNA methyltransferase [Rhodothermus sp. XMH10] Length = 51 Score = 49.7 bits (117), Expect = 8e-04, Method: Composition-based stats. Identities = 23/48 (47%), Positives = 33/48 (68%), Gaps = 3/48 (6%) Query: 25 VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS---CCA 69 +AMSGGVDSSV AALL GY+V+G+T++ ++ + R G CC+ Sbjct: 1 MAMSGGVDSSVTAALLHEQGYEVVGITMKTWDYTSSGVRTGKEVGCCS 48 >gi|301299185|ref|ZP_07205473.1| argininosuccinate synthase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300853213|gb|EFK80809.1| argininosuccinate synthase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 403 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 17/126 (13%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRV 79 +VV+A SGG+D+SV A LK GYDVI + + + +A K KG Sbjct: 5 KVVLAYSGGLDTSVEIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGLKVGA--------- 55 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138 V V D + F ++P YA E P V +R + L+ V ++ GA Sbjct: 56 -----VESIVIDAKHEFAEEYVLPALQGYAYYENKYPLVSALSRPLIVKKLVEVAKEHGA 110 Query: 139 DVLATG 144 +A G Sbjct: 111 TAIAHG 116 >gi|28210054|ref|NP_780998.1| hypothetical protein CTC00292 [Clostridium tetani E88] gi|28202489|gb|AAO34935.1| conserved protein [Clostridium tetani E88] Length = 326 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 31/195 (15%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R + +SGG+DS + A L+K G DVIGV + + + S A R+ Sbjct: 3 RALAMISGGLDSILAAKLMKDQGIDVIGVCFKSHFFNEES--------------AIRMTK 48 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR-TVKFSDLLSVTRQLGADV 140 I++ + D+ E+ V P Y G+ PC+DC+ + +S L + L AD Sbjct: 49 QIDIPLKIVDFSEKHLEIVKNP---KYGYGKNMNPCIDCHSLMMNYSGKL--LKDLEADF 103 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 + TG + R + +++ ++ S + + LC P +M+ + + Sbjct: 104 IITGEVLNQRPMSQNKSS--------LEIVKNHSGYA-DKILRPLCAKNLPPTEMELKGI 154 Query: 201 RDLAREMGLDIADKS 215 D RE LDI+ +S Sbjct: 155 VD--REKLLDISGRS 167 >gi|182420268|ref|ZP_02951497.1| tRNA methyl transferase [Clostridium butyricum 5521] gi|237666593|ref|ZP_04526578.1| tRNA methyl transferase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375863|gb|EDT73455.1| tRNA methyl transferase [Clostridium butyricum 5521] gi|237657792|gb|EEP55347.1| tRNA methyl transferase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 329 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 60/130 (46%), Gaps = 20/130 (15%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R + +SGG+DS + A L+K G DVIG+ + Y + +A+R+ Sbjct: 3 RALAMISGGLDSILAAKLIKEQGIDVIGICFRSYFFNEE--------------NAKRMTK 48 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140 I + V D+ + + V P + G+ PC+DC+ +++S L ++ AD Sbjct: 49 QIGIPLEVIDFSKEHFDMVKSP---EHGWGKNMNPCIDCHAMMMRYSGEL--LKKFNADF 103 Query: 141 LATGHYIRSR 150 + TG + R Sbjct: 104 IITGEVLNQR 113 >gi|299783595|gb|ADJ41593.1| Argininosuccinate synthase [Lactobacillus fermentum CECT 5716] Length = 429 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 17/126 (13%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRV 79 +VV+A SGG+D+SV A LK GYDVI + + + +A K+KG Sbjct: 5 KVVLAYSGGLDTSVEIAWLKNKGYDVIACCIDVGEGKDLEAIKKKGLKVGA--------- 55 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138 V V D +E F + +P ++A E P V +R + L+ V ++ GA Sbjct: 56 -----VKSVVIDAKEEFASEYCLPALQAHAMYENKYPLVSALSRPLIVKKLVEVAKENGA 110 Query: 139 DVLATG 144 +A G Sbjct: 111 TAIAHG 116 >gi|169840170|ref|ZP_02873358.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [candidate division TM7 single-cell isolate TM7a] Length = 48 Score = 48.9 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 5/45 (11%) Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLD 284 +V+ G++LG HNG++ YTIGQR+G+G+ GEP FVV D Sbjct: 1 MVNTQGKVLGHHNGLMYYTIGQRKGIGIGNTKEGTGEPWFVVDKD 45 >gi|170760015|ref|YP_001785458.1| hypothetical protein CLK_3304 [Clostridium botulinum A3 str. Loch Maree] gi|169407004|gb|ACA55415.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch Maree] Length = 326 Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 24/132 (18%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDARRV 79 R + +SGG+DS++ A L+K G +VIG+ + Y N + +A R+ Sbjct: 3 RALAMISGGLDSTLAAKLIKDQGIEVIGICFRSYFFNEK----------------NAERM 46 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGA 138 I++ V D+ + + V P + G+ PC+DC+ +K+S L ++ A Sbjct: 47 TKQIDIPLEVVDFSKEHLDMVKNP---KHGYGKNMNPCIDCHAMMMKYSGEL--LKKFNA 101 Query: 139 DVLATGHYIRSR 150 D + TG + R Sbjct: 102 DFIITGEVLNQR 113 >gi|322804399|emb|CBZ01949.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum H04402 065] Length = 326 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 24/132 (18%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDARRV 79 R + +SGG+DS++ A L+K G +VIG+ + Y N + +A R+ Sbjct: 3 RALAMISGGLDSTLAAKLIKDQGIEVIGICFRSYFFNEK----------------NAERM 46 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGA 138 I++ V D+ + V P + G+ PC+DC+ +K+S L ++ A Sbjct: 47 TKQIDIPLEVVDFSKEHLEMVKSP---KHGYGKNMNPCIDCHAMMMKYSGEL--LKKFNA 101 Query: 139 DVLATGHYIRSR 150 D + TG + R Sbjct: 102 DFIITGEVLNQR 113 >gi|170757780|ref|YP_001779756.1| hypothetical protein CLD_0657 [Clostridium botulinum B1 str. Okra] gi|169122992|gb|ACA46828.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra] Length = 326 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 24/132 (18%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDARRV 79 R + +SGG+DS++ A L+K G +VIG+ + Y N + +A R+ Sbjct: 3 RALAMISGGLDSTLAAKLIKDQGIEVIGICFRSYFFNEK----------------NAERM 46 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGA 138 I++ V D+ + + V P + G+ PC+DC+ +K+S L ++ A Sbjct: 47 TKQIDIPLEVVDFSKEHLDMVKNP---KHGYGKNMNPCIDCHAMMMKYSGEL--LKKFNA 101 Query: 139 DVLATGHYIRSR 150 D + TG + R Sbjct: 102 DFIITGEVLNQR 113 >gi|148378135|ref|YP_001252676.1| hypothetical protein CBO0129 [Clostridium botulinum A str. ATCC 3502] gi|153930964|ref|YP_001382536.1| hypothetical protein CLB_0165 [Clostridium botulinum A str. ATCC 19397] gi|153937112|ref|YP_001386088.1| hypothetical protein CLC_0177 [Clostridium botulinum A str. Hall] gi|148287619|emb|CAL81684.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|152927008|gb|ABS32508.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 19397] gi|152933026|gb|ABS38525.1| conserved hypothetical protein [Clostridium botulinum A str. Hall] Length = 326 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 24/132 (18%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDARRV 79 R + +SGG+DS++ A L+K G +VIG+ + Y N + +A R+ Sbjct: 3 RALAMISGGLDSTLAAKLIKDQGIEVIGICFRSYFFNEK----------------NAERM 46 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGA 138 I++ V D+ + + V P + G+ PC+DC+ +K+S L ++ A Sbjct: 47 TKQIDIPLEVVDFSKEHLDMVKNP---KHGYGKNMNPCIDCHAMMMKYSGEL--LKKFNA 101 Query: 139 DVLATGHYIRSR 150 D + TG + R Sbjct: 102 DFIITGEVLNQR 113 >gi|153938098|ref|YP_001389492.1| hypothetical protein CLI_0184 [Clostridium botulinum F str. Langeland] gi|152933994|gb|ABS39492.1| conserved hypothetical protein [Clostridium botulinum F str. Langeland] gi|295317593|gb|ADF97970.1| conserved hypothetical protein [Clostridium botulinum F str. 230613] Length = 326 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 24/132 (18%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDARRV 79 R + +SGG+DS++ A L+K G +VIG+ + Y N + +A R+ Sbjct: 3 RALAMISGGLDSTLAAKLIKDQGIEVIGICFRSYFFNEK----------------NAERM 46 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGA 138 I++ V D+ + + V P + G+ PC+DC+ +K+S L ++ A Sbjct: 47 TKQIDIPLEVVDFSKEHLDMVKNP---KHGYGKNMNPCIDCHAMMMKYSGEL--LKKFNA 101 Query: 139 DVLATGHYIRSR 150 D + TG + R Sbjct: 102 DFIITGEVLNQR 113 >gi|168177461|ref|ZP_02612125.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] gi|226947352|ref|YP_002802443.1| hypothetical protein CLM_0172 [Clostridium botulinum A2 str. Kyoto] gi|182671002|gb|EDT82976.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] gi|226844468|gb|ACO87134.1| conserved hypothetical protein [Clostridium botulinum A2 str. Kyoto] Length = 326 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 24/132 (18%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDARRV 79 R + +SGG+DS++ A L+K G +VIG+ + Y N + +A R+ Sbjct: 3 RALAMISGGLDSTLAAKLIKDQGIEVIGICFRSYFFNEK----------------NAERM 46 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGA 138 I++ V D+ + + V P + G+ PC+DC+ +K+S L ++ A Sbjct: 47 TKQIDIPLEVVDFSKEHLDMVKNP---KHGYGKNMNPCIDCHAMMMKYSGEL--LKKFNA 101 Query: 139 DVLATGHYIRSR 150 D + TG + R Sbjct: 102 DFIITGEVLNQR 113 >gi|227515369|ref|ZP_03945418.1| argininosuccinate synthase [Lactobacillus fermentum ATCC 14931] gi|227086283|gb|EEI21595.1| argininosuccinate synthase [Lactobacillus fermentum ATCC 14931] Length = 438 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 17/126 (13%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRV 79 +VV+A SGG+D+SV A LK GYDVI + + + +A K KG Sbjct: 14 KVVLAYSGGLDTSVEIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGLKVGA--------- 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138 V V D +E F + +P ++A E P V +R + L+ V ++ GA Sbjct: 65 -----VKSVVIDAKEEFASEYCLPALQAHAMYENKYPLVSALSRPLIVKKLVEVAKENGA 119 Query: 139 DVLATG 144 +A G Sbjct: 120 TAIAHG 125 >gi|32266697|ref|NP_860729.1| hypothetical protein HH1198 [Helicobacter hepaticus ATCC 51449] gi|32262748|gb|AAP77795.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449] Length = 348 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 15/131 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRV 79 M + SGG DS + LLK G DVI + + + S K Q Sbjct: 1 MLALALFSGGCDSLISMKLLKDQGIDVIALHFNIGFGSNKDKLAYFQNATAQ-------- 52 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 I+V + D +++F N V+ F Y G+ PC+DC+ + F++ Q+GAD Sbjct: 53 ---IDVKLQILDIQQQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FANAFDYLLQVGAD 106 Query: 140 VLATGHYIRSR 150 + +G + R Sbjct: 107 FVVSGEVLGQR 117 >gi|187777280|ref|ZP_02993753.1| hypothetical protein CLOSPO_00832 [Clostridium sporogenes ATCC 15579] gi|187774208|gb|EDU38010.1| hypothetical protein CLOSPO_00832 [Clostridium sporogenes ATCC 15579] Length = 333 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 24/132 (18%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDARRV 79 R + +SGG+DS++ A L+K G +VIG+ + Y N + +A R+ Sbjct: 10 RALAMISGGLDSTLAAKLIKDQGIEVIGICFRSYFFNEK----------------NAERM 53 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR-TVKFSDLLSVTRQLGA 138 I++ V D+ ++ V P + G+ PC+DC+ +K+S L + A Sbjct: 54 TKQIDIPLEVVDFSKKHLEMVKNP---KHGYGKNMNPCIDCHSMMMKYSGEL--LEKFNA 108 Query: 139 DVLATGHYIRSR 150 D + TG + R Sbjct: 109 DFIITGEVLNQR 120 >gi|126642474|ref|YP_001085458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter baumannii ATCC 17978] gi|126388358|gb|ABO12856.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter baumannii ATCC 17978] Length = 64 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 3/60 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ V D Sbjct: 4 RVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTEY---CTAMEDLADAQAVAD 60 >gi|168182262|ref|ZP_02616926.1| conserved hypothetical protein [Clostridium botulinum Bf] gi|237793447|ref|YP_002860999.1| hypothetical protein CLJ_B0167 [Clostridium botulinum Ba4 str. 657] gi|182674625|gb|EDT86586.1| conserved hypothetical protein [Clostridium botulinum Bf] gi|229262133|gb|ACQ53166.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657] Length = 326 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 34/130 (26%), Positives = 61/130 (46%), Gaps = 20/130 (15%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R + +SGG+DS++ A L+K G +VIG+ + Y + +A R+ Sbjct: 3 RALAMISGGLDSTLAAKLIKDQGIEVIGICFRSYFFNEK--------------NAERMTK 48 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140 I++ V D+ + + V P + G+ PC+DC+ +K+S L ++ AD Sbjct: 49 QIDIPLEVVDFSKEHLDMVKNP---KHGYGKNMNPCIDCHAMMMKYSGEL--LKRFNADF 103 Query: 141 LATGHYIRSR 150 + TG + R Sbjct: 104 IITGEVLNQR 113 >gi|319744076|gb|EFV96453.1| argininosuccinate synthase [Streptococcus agalactiae ATCC 13813] Length = 396 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++++A SGG+D+SV A LK+D YDVI V + + G+D+ Sbjct: 5 KLILAYSGGLDTSVAIAWLKKD-YDVIAVCMDV-------------GEGKDLDFIHEKAL 50 Query: 82 TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 TI + Y+ D ++ F ++P ++A E P V +R + L+ + Q GA Sbjct: 51 TIGAIESYILDVKDEFAEHFVLPALQAHAMYEQKYPLVSALSRPIIAQKLVEMAHQTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|227891841|ref|ZP_04009646.1| argininosuccinate synthase [Lactobacillus salivarius ATCC 11741] gi|227866304|gb|EEJ73725.1| argininosuccinate synthase [Lactobacillus salivarius ATCC 11741] Length = 409 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 17/126 (13%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRV 79 +VV+A SGG+D+SV A LK GYDVI + + + +A K KG Sbjct: 11 KVVLAYSGGLDTSVEIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGLKVGA--------- 61 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138 V V D + F ++P +A E P V +R + L+ V ++ GA Sbjct: 62 -----VESIVIDAKHEFAEEYVLPALQGHAYYENKYPLVSALSRPLIVKKLVEVAKEHGA 116 Query: 139 DVLATG 144 +A G Sbjct: 117 TAIAHG 122 >gi|90961287|ref|YP_535203.1| argininosuccinate synthase [Lactobacillus salivarius UCC118] gi|119361283|sp|Q1WV65|ASSY_LACS1 RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|90820481|gb|ABD99120.1| Argininosuccinate synthase [Lactobacillus salivarius UCC118] Length = 403 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 17/126 (13%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRV 79 +VV+A SGG+D+SV A LK GYDVI + + + +A K KG Sbjct: 5 KVVLAYSGGLDTSVEIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGLKVGA--------- 55 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138 V V D + F ++P +A E P V +R + L+ V ++ GA Sbjct: 56 -----VESIVIDAKHEFAEEYVLPALQGHAYYENKYPLVSALSRPLIVKKLVEVAKEHGA 110 Query: 139 DVLATG 144 +A G Sbjct: 111 TAIAHG 116 >gi|222153770|ref|YP_002562947.1| argininosuccinate synthase [Streptococcus uberis 0140J] gi|254807533|sp|B9DVV9|ASSY_STRU0 RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|222114583|emb|CAR43561.1| argininosuccinate synthase [Streptococcus uberis 0140J] Length = 399 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 60/125 (48%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 ++V+A SGG+D+SV A LK+D +DVI V + + G+D+ + + Sbjct: 5 KIVLAYSGGLDTSVAIAWLKKD-FDVIAVCMDV-------------GEGKDLQFIHEKAL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + YV D +E F A ++P ++A E P V +R + L+ + + GA Sbjct: 51 KIGAIESYVIDVKEEFAEAFVLPALQAHAFYEQKYPLVSALSRPLISKKLVDIAHECGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 YIAHG 115 >gi|300214168|gb|ADJ78584.1| Argininosuccinate synthase(Citrulline--aspartate ligase) [Lactobacillus salivarius CECT 5713] Length = 403 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 17/126 (13%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRV 79 +VV+A SGG+D+SV A LK GYDVI + + + +A K KG Sbjct: 5 KVVLAYSGGLDTSVEIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGLKVGA--------- 55 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138 V V D + F ++P +A E P V +R + L+ V ++ GA Sbjct: 56 -----VESIVIDAKHEFAEEYVLPALQGHAYYENKYPLVSALSRPLIVKKLVEVAKEHGA 110 Query: 139 DVLATG 144 +A G Sbjct: 111 TAIAHG 116 >gi|313124829|ref|YP_004035093.1| hypothetical protein Hbor_00410 [Halogeometricum borinquense DSM 11551] gi|312291194|gb|ADQ65654.1| conserved hypothetical protein TIGR00268 [Halogeometricum borinquense DSM 11551] Length = 302 Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 77/192 (40%), Gaps = 40/192 (20%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V++A SGGVDSSVVAAL +D +G + A K +++ DARRV D Sbjct: 31 VLIAFSGGVDSSVVAAL----AHDALG------DDAIACTAKSETLPTEELDDARRVADE 80 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + H + ++ E N V C C RT++ + R+ G + + Sbjct: 81 IGIRHEIVEFSE-LDNPDFVANDGDR--------CYHC-RTMRLGRMYDAARERGIETVC 130 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 G D G+ R R ++ S L D+ KE VR Sbjct: 131 DG------TNASDPGEGHRPGLRAVEELEVLSPLL--------------THDISKEEVRA 170 Query: 203 LAREMGLDIADK 214 +A GL +ADK Sbjct: 171 IADSYGLSVADK 182 >gi|188589825|ref|YP_001919873.1| argininosuccinate synthase [Clostridium botulinum E3 str. Alaska E43] gi|188500106|gb|ACD53242.1| argininosuccinate synthase [Clostridium botulinum E3 str. Alaska E43] Length = 330 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 20/131 (15%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 ++ + +SGG+DS + A L+K G +VIG+ + Y + +A+R+ Sbjct: 2 VKALAMISGGLDSILAAKLIKEQGIEVIGICFKSYFFNEE--------------NAKRMT 47 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR-TVKFSDLLSVTRQLGAD 139 + I + V D+ E + V P + G+ PC+DC+ + +S L + AD Sbjct: 48 EQIGIKLEVIDFSEEHFDLVRNP---KHGWGKNMNPCIDCHSMMMNYSGKL--LEKFNAD 102 Query: 140 VLATGHYIRSR 150 + TG + R Sbjct: 103 FIITGEVLNQR 113 >gi|187935593|ref|YP_001884686.1| argininosuccinate synthase [Clostridium botulinum B str. Eklund 17B] gi|187723746|gb|ACD24967.1| argininosuccinate synthase [Clostridium botulinum B str. Eklund 17B] Length = 330 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 60/131 (45%), Gaps = 20/131 (15%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 ++ + +SGG+DS + A L+K G +VIG+ + Y + +A+R+ Sbjct: 2 VKALAMISGGLDSILAAKLIKEQGIEVIGICFKSYFFNEE--------------NAKRMT 47 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR-TVKFSDLLSVTRQLGAD 139 + I + V D+ E + V P + G+ PC+DC+ + +S L + AD Sbjct: 48 EQIGIKLEVIDFSEEHFDLVRNP---KHGWGKNMNPCIDCHSMMMNYSGKL--LEKFNAD 102 Query: 140 VLATGHYIRSR 150 + TG + R Sbjct: 103 FIITGEVLNQR 113 >gi|76799640|ref|ZP_00781753.1| Argininosuccinate synthase (Citrulline--aspartateligase) [Streptococcus agalactiae 18RS21] gi|76585007|gb|EAO61652.1| Argininosuccinate synthase (Citrulline--aspartateligase) [Streptococcus agalactiae 18RS21] Length = 226 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++++A SGG+D+SV A LK+D YDVI V + + G+D+ Sbjct: 5 KLILAYSGGLDTSVAIAWLKKD-YDVIAVCMDV-------------GEGKDLDFIHDKAL 50 Query: 82 TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 TI + Y+ D ++ F ++P ++A E P V +R + L+ + Q GA Sbjct: 51 TIGAIESYILDVKDEFAEHFVLPALQAHAMYEQKYPLVSALSRPIIAQKLVEMAHQTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|217967878|ref|YP_002353384.1| protein of unknown function DUF814 [Dictyoglomus turgidum DSM 6724] gi|217336977|gb|ACK42770.1| protein of unknown function DUF814 [Dictyoglomus turgidum DSM 6724] Length = 327 Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 61/134 (45%), Gaps = 22/134 (16%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K R + +SGG+DS + L+ + DVIG+T ++ A+R Sbjct: 2 KKARAISLISGGLDSILATWLILQQNIDVIGITF--------------STPFFNLERAKR 47 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV--KFSDLLSVTRQL 136 C+ +N+ ++ D E + + + P + G+ PC+DC+ + K +LL ++ Sbjct: 48 ACEFLNIPLHIVDITEEYMDILKNP---RFGYGKNMNPCIDCHAFMVKKAKELL---KEF 101 Query: 137 GADVLATGHYIRSR 150 A+ + TG + R Sbjct: 102 NAEFIITGEVLGER 115 >gi|15615749|ref|NP_244053.1| argininosuccinate synthase [Bacillus halodurans C-125] gi|20137501|sp|Q9K820|ASSY_BACHD RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|10175810|dbj|BAB06906.1| argininosuccinate synthase (citrulline-asparate ligase) [Bacillus halodurans C-125] Length = 409 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L GYDVI V L + G+D+ + + Sbjct: 5 KVVLAYSGGLDTSVAIKWLSDKGYDVIAVGLDV-------------GEGKDLEFVKEKAL 51 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y D ++ F ++P ++A E P V +R + L+ + Q GA Sbjct: 52 KVGAIESYTIDAKKEFAEEFVLPALQAHALYEQKYPLVSALSRPLISKKLVEIAEQTGAQ 111 Query: 140 VLATG 144 +A G Sbjct: 112 AVAHG 116 >gi|169839707|ref|ZP_02872895.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [candidate division TM7 single-cell isolate TM7a] Length = 42 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 24/36 (66%), Positives = 28/36 (77%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54 K RVV+ MSGGVDSSV A LLK GYDVIGV +++ Sbjct: 3 KRKRVVLGMSGGVDSSVAAILLKEQGYDVIGVFMKI 38 >gi|76788242|ref|YP_328849.1| argininosuccinate synthase [Streptococcus agalactiae A909] gi|77406211|ref|ZP_00783280.1| argininosuccinate synthase [Streptococcus agalactiae H36B] gi|119361331|sp|Q3K3Q4|ASSY_STRA1 RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|76563299|gb|ABA45883.1| argininosuccinate synthase [Streptococcus agalactiae A909] gi|77175161|gb|EAO77961.1| argininosuccinate synthase [Streptococcus agalactiae H36B] Length = 396 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++++A SGG+D+SV A LK+D YDVI V + + G+D+ Sbjct: 5 KLILAYSGGLDTSVAIAWLKKD-YDVIAVCMDV-------------GEGKDLDFIHDKAL 50 Query: 82 TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 TI + Y+ D ++ F ++P ++A E P V +R + L+ + Q GA Sbjct: 51 TIGAIESYILDVKDEFAEHFVLPALQAHAMYEQKYPLVSALSRPIIAQKLVEMAHQTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|323340536|ref|ZP_08080791.1| argininosuccinate synthase [Lactobacillus ruminis ATCC 25644] gi|323092080|gb|EFZ34697.1| argininosuccinate synthase [Lactobacillus ruminis ATCC 25644] Length = 402 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 23/129 (17%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77 +VV+A SGG+D+SV A LK GYDVI +CC G+D+ + + Sbjct: 7 KVVLAYSGGLDTSVEIAWLKNKGYDVI-----------------ACCIDVGEGKDLEEVK 49 Query: 78 RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQ 135 + + V V D ++ F +P +A E P V +R + L+ V ++ Sbjct: 50 QKGLAVGAVESIVIDAKKEFAEEYCLPALQGHAYYENKYPLVSALSRPLIVKHLVEVAKK 109 Query: 136 LGADVLATG 144 GA +A G Sbjct: 110 YGATAIAHG 118 >gi|25010198|ref|NP_734593.1| argininosuccinate synthase [Streptococcus agalactiae NEM316] gi|77414560|ref|ZP_00790704.1| argininosuccinate synthase [Streptococcus agalactiae 515] gi|30172837|sp|Q8E7N1|ASSY_STRA3 RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|23094549|emb|CAD45768.1| Unknown [Streptococcus agalactiae NEM316] gi|77159401|gb|EAO70568.1| argininosuccinate synthase [Streptococcus agalactiae 515] Length = 396 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++++A SGG+D+SV A LK+D YDVI V + + G+D+ Sbjct: 5 KLILAYSGGLDTSVAIAWLKKD-YDVIAVCMDV-------------GEGKDLDFIHDKAL 50 Query: 82 TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 TI + Y+ D ++ F ++P ++A E P V +R + L+ + Q GA Sbjct: 51 TIGAIESYILDVKDEFAEHFVLPALQAHAMYEQKYPLVSALSRPIIAQKLVEMAHQTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|77409194|ref|ZP_00785905.1| argininosuccinate synthase [Streptococcus agalactiae COH1] gi|77172202|gb|EAO75360.1| argininosuccinate synthase [Streptococcus agalactiae COH1] Length = 396 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++++A SGG+D+SV A LK+D YDVI V + + G+D+ Sbjct: 5 KLILAYSGGLDTSVAIAWLKKD-YDVIAVCMDV-------------GEGKDLDFIHDKAL 50 Query: 82 TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 TI + Y+ D ++ F ++P ++A E P V +R + L+ + Q GA Sbjct: 51 TIGAIESYILDVKDEFAEHFVLPALQAHAMYEQKYPLVSALSRPIIAQKLVEMAHQTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|22536310|ref|NP_687161.1| argininosuccinate synthase [Streptococcus agalactiae 2603V/R] gi|77412174|ref|ZP_00788496.1| argininosuccinate synthase [Streptococcus agalactiae CJB111] gi|30172835|sp|Q8E272|ASSY_STRA5 RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|22533133|gb|AAM99033.1|AE014197_1 argininosuccinate synthase [Streptococcus agalactiae 2603V/R] gi|77161792|gb|EAO72781.1| argininosuccinate synthase [Streptococcus agalactiae CJB111] Length = 396 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++++A SGG+D+SV A LK+D YDVI V + + G+D+ Sbjct: 5 KLILAYSGGLDTSVAIAWLKKD-YDVIAVCMDV-------------GEGKDLDFIHDKAL 50 Query: 82 TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 TI + Y+ D ++ F ++P ++A E P V +R + L+ + Q GA Sbjct: 51 TIGAIESYILDVKDEFAEHFVLPALQAHAMYEQKYPLVSALSRPIIAQKLVEMAHQTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|32473865|ref|NP_866859.1| ATP-utilizing enzyme [Rhodopirellula baltica SH 1] gi|32444401|emb|CAD74400.1| conserved hypothetical protein-putative ATP-utilizing enzyme [Rhodopirellula baltica SH 1] Length = 316 Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 21/120 (17%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 +VVA SGGVDSSVVAA R G DV+ VT Q A + ARRV + Sbjct: 31 LVVAFSGGVDSSVVAAAAHRTGRDVVAVTAQ-----------SPAVARWQLDWARRVAEQ 79 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + ++H +E R SSY + C C +T+ + L + Q GA +++ Sbjct: 80 VGITHQFVSTDESDR--------SSYRRNHSDR-CFYCKQTL-YEFLTPIAEQRGATIVS 129 >gi|56964502|ref|YP_176233.1| argininosuccinate synthase [Bacillus clausii KSM-K16] gi|68566236|sp|Q5WED8|ASSY_BACSK RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|56910745|dbj|BAD65272.1| argininosuccinate synthase [Bacillus clausii KSM-K16] Length = 403 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L GYDVI V L + G+D+ + ++ Sbjct: 5 KVVLAYSGGLDTSVAVKWLTDKGYDVIAVGLDV-------------GEGKDLEFVKQKAL 51 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y D ++ + + ++P ++A E P V +R + L+ + Q GA Sbjct: 52 QVGAIQSYTIDAKKEYAESFVLPALQAHALYEQKYPLVSALSRPLISKKLVEIAEQTGAT 111 Query: 140 VLATG 144 +A G Sbjct: 112 AVAHG 116 >gi|251779527|ref|ZP_04822447.1| argininosuccinate synthase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083842|gb|EES49732.1| argininosuccinate synthase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 330 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 59/131 (45%), Gaps = 20/131 (15%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 ++ + +SGG+DS + A L+K G +VIG+ + Y + +A+R+ Sbjct: 2 VKALAMISGGLDSILAAKLIKEQGIEVIGICFKSYFFNEE--------------NAKRMT 47 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR-TVKFSDLLSVTRQLGAD 139 I + V D+ E + V P + G+ PC+DC+ + +S L + AD Sbjct: 48 QQIGIKLEVIDFSEEHFDLVRNP---KHGWGKNMNPCIDCHSMMMNYSGKL--LEKFNAD 102 Query: 140 VLATGHYIRSR 150 + TG + R Sbjct: 103 FIITGEVLNQR 113 >gi|289581720|ref|YP_003480186.1| asparagine synthase [Natrialba magadii ATCC 43099] gi|289531273|gb|ADD05624.1| asparagine synthase [Natrialba magadii ATCC 43099] Length = 317 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 51/194 (26%), Positives = 77/194 (39%), Gaps = 44/194 (22%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V+VA SGGVDSSVVAAL +D +G + A K ++ DA RV D Sbjct: 59 VLVAFSGGVDSSVVAAL----AHDALG------DDAVACTAKSETLPEAELEDATRVADE 108 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + H + + E S C C RT++ +++ R LG + + Sbjct: 109 IGIRHEIVSFSE---------LESDQFVENDDERCYHC-RTMRLGEMIETARDLGIETVC 158 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL--GDMKKESV 200 G D G R + + + ++ PL D+ K+ V Sbjct: 159 DG------TNADDPGAGHRPGLQAV----------------EELEIHSPLLAHDIAKDEV 196 Query: 201 RDLAREMGLDIADK 214 R +A + GL +ADK Sbjct: 197 RAIADQYGLSVADK 210 >gi|24378832|ref|NP_720787.1| argininosuccinate synthase [Streptococcus mutans UA159] gi|29336640|sp|Q8CWZ0|ASSY_STRMU RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|24376708|gb|AAN58093.1|AE014881_7 argininosuccinate synthase (citrulline-asparate ligase) [Streptococcus mutans UA159] Length = 396 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +V++A SGG+D+SV LK+D YDV+ V + + G+D+ + + Sbjct: 5 KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLEFIHDKAL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + YV D ++ F ++P ++A E P V +R V L+ + Q GA Sbjct: 51 KVGAIESYVLDIKDEFAEEYVLPALQAHAYYEQKYPLVSALSRPVISKKLVEIAHQTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|290581142|ref|YP_003485534.1| argininosuccinate synthase [Streptococcus mutans NN2025] gi|254998041|dbj|BAH88642.1| argininosuccinate synthase [Streptococcus mutans NN2025] Length = 396 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +V++A SGG+D+SV LK+D YDV+ V + + G+D+ + + Sbjct: 5 KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLEFIHDKAL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + YV D ++ F ++P ++A E P V +R V L+ + Q GA Sbjct: 51 KVGAIESYVLDIKDEFAEEYVLPALQAHAYYEQKYPLVSALSRPVISKKLVEIAHQTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|255525844|ref|ZP_05392773.1| thiamine biosynthesis protein [Clostridium carboxidivorans P7] gi|255510487|gb|EET86798.1| thiamine biosynthesis protein [Clostridium carboxidivorans P7] Length = 327 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 20/130 (15%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 + + MSGG+DS++ A L+K G +VIG+ + S G D +A R+ Sbjct: 3 KALAMMSGGLDSTLAAKLMKDQGIEVIGICFK------------SHFFGAD--NAIRMAK 48 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140 IN+ V D+ E V P + G+ PC+DC+ + +S + + AD Sbjct: 49 QINMPLEVVDFSEEHFEMVKNP---KHGYGKNMNPCIDCHAMMMNYSG--KMLEKYEADF 103 Query: 141 LATGHYIRSR 150 + TG + R Sbjct: 104 IITGEVLNQR 113 >gi|146279089|ref|YP_001169248.1| NAD+ synthetase [Rhodobacter sphaeroides ATCC 17025] gi|145557330|gb|ABP71943.1| NAD+ synthetase [Rhodobacter sphaeroides ATCC 17025] Length = 514 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 12/78 (15%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V+ MSGGVDS++ AAL K G+ V+G+TL + + + ++R C+ Sbjct: 75 AVLGMSGGVDSALTAALFKAAGWRVVGLTLPIDQNPEETER------------GIEACEA 122 Query: 83 INVSHYVFDYEERFRNAV 100 + + H D + +R AV Sbjct: 123 LRIEHLHLDLSQAYRAAV 140 >gi|313682703|ref|YP_004060441.1| nh(3)-dependent nad(+) synthetase [Sulfuricurvum kujiense DSM 16994] gi|313155563|gb|ADR34241.1| NH(3)-dependent NAD(+) synthetase [Sulfuricurvum kujiense DSM 16994] Length = 266 Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust. Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 49/207 (23%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VVV +SGG+DS+VVA L R G D++ + + + S +S + DA +C Sbjct: 26 KVVVGLSGGIDSAVVAVLAHRAFGDDLLCIKMPSHYSSMSS-----------LDDADELC 74 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGAD 139 T + + E P +Y + + +PL + + ++ L ++ + GA Sbjct: 75 GTFGLRSETYSIE---------PMLKAYESSDMSPLRIGNLSARLRMVTLFDISAREGAL 125 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 VL T + +S L +G + T L P+GD+ K Sbjct: 126 VLGTSN--KSELMLG-----------------------YGTLHGDLASAINPIGDLYKTE 160 Query: 200 VRDLAREMGL--DIADKSDSQDICFVQ 224 V +LAR +G+ I DK S D+ Q Sbjct: 161 VFELARYLGVPSSIIDKPPSADLWAGQ 187 >gi|207110156|ref|ZP_03244318.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori HPKX_438_CA4C1] Length = 82 Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 13/87 (14%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 RL ++ ++ K M++ V +SGGVDSS A LK G++++G+ L+L+ S K Sbjct: 7 RLRAITFNERLK-MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKK------- 58 Query: 68 CAGQDVY--DARRVCDTINVSHYVFDY 92 D+Y +A++ C+ + + V D+ Sbjct: 59 ---HDLYIKNAQKACEFLGIPLEVLDF 82 >gi|238063187|ref|ZP_04607896.1| tRNA-specific 2-thiouridylase mnmA [Micromonospora sp. ATCC 39149] gi|237884998|gb|EEP73826.1| tRNA-specific 2-thiouridylase mnmA [Micromonospora sp. ATCC 39149] Length = 95 Score = 46.2 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 39/96 (40%), Positives = 54/96 (56%), Gaps = 3/96 (3%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVC 80 ++ AMSGGVDS+V AA G+DV GV L L + + + R G+ CC +D DARR Sbjct: 1 MLAAMSGGVDSAVAAARAVEAGHDVTGVHLALARNPQ-TYRTGARGCCTLEDARDARRAA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116 D + + YV+D +RF V+ + S AG P P Sbjct: 60 DVLGIPFYVWDMADRFHADVVTTSSPSTRAGPYPEP 95 >gi|55737770|gb|AAV61412.1| argininosuccinate synthase [Streptococcus thermophilus LMG 18311] gi|55739688|gb|AAV63329.1| argininosuccinate synthase [Streptococcus thermophilus CNRZ1066] Length = 415 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 16/132 (12%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 + N +V++A SGG+D+SV LK+D YDVI V + + G+D+ Sbjct: 14 ENNMSKEKVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV-------------GEGKDLE 59 Query: 75 DARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSV 132 T+ V YV D ++ F ++P ++A E P V +R + L+ + Sbjct: 60 FIHDKALTVGAVESYVLDVKDEFAEDYVLPALQAHAYYEQKYPLVSALSRPIIAKKLVEI 119 Query: 133 TRQLGADVLATG 144 + GA +A G Sbjct: 120 AHKTGATTIAHG 131 >gi|15902146|ref|NP_357696.1| argininosuccinate synthase [Streptococcus pneumoniae R6] gi|15457639|gb|AAK98906.1| Argininosuccinate synthase [Streptococcus pneumoniae R6] Length = 415 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 16/132 (12%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV- 73 +KN +V++A SGG+D+SV LK+D YDV+ V + + G+D+ Sbjct: 15 EKNMSKEKVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLD 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSV 132 + + V YV D ++ F ++ S+A E P V +R + L+ + Sbjct: 61 FIHDKALKVGAVESYVIDVKDEFATDYVLVAHQSHAYYEQKYPLVSALSRPLISKKLVEI 120 Query: 133 TRQLGADVLATG 144 Q+GA +A G Sbjct: 121 AHQIGATTIAHG 132 >gi|182683079|ref|YP_001834826.1| argininosuccinate synthase, truncation [Streptococcus pneumoniae CGSP14] gi|182628413|gb|ACB89361.1| argininosuccinate synthase, truncation [Streptococcus pneumoniae CGSP14] Length = 156 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 61/132 (46%), Gaps = 16/132 (12%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV- 73 +KN +V++A SGG+D+SV LK+D YDV+ V + + G+D+ Sbjct: 15 EKNMSKEKVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLD 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSV 132 + + V YV D ++ F ++ S+A E P V +R + L+ + Sbjct: 61 FIHDKALKVGAVESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEI 120 Query: 133 TRQLGADVLATG 144 Q+GA +A G Sbjct: 121 AHQIGATTIAHG 132 >gi|242309258|ref|ZP_04808413.1| tRNA methyltransferase [Helicobacter pullorum MIT 98-5489] gi|239524299|gb|EEQ64165.1| tRNA methyltransferase [Helicobacter pullorum MIT 98-5489] Length = 325 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 13/130 (10%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+ + SGG+DS + ++K G DV+ + + K K + + + Sbjct: 1 MKALALFSGGLDSLLAIKIIKDMGIDVLALHFNIGFVGKNDKSEA----------LKEIL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 I+V V D ++F + V+ FA Y G+ PC+DC+ + FS S+ GA Sbjct: 51 AQIDVPLKVIDIRKQFFDEVL--FAPKYGYGKYFNPCIDCHGNM-FSHAFSLLESEGASF 107 Query: 141 LATGHYIRSR 150 + +G + R Sbjct: 108 VISGEVLGQR 117 >gi|300871373|ref|YP_003786246.1| thiamine biosynthesis protein [Brachyspira pilosicoli 95/1000] gi|300689074|gb|ADK31745.1| thiamine biosynthesis protein [Brachyspira pilosicoli 95/1000] Length = 346 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 6/127 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K + ++ +SGG+DS +V A+LKR+ DV+ V K + D A++ Sbjct: 2 KKAKAILLLSGGLDSMLVGAILKRENIDVLAVRFVTGLEYPVIKNELMNIHYDD--PAKK 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D +N+ ++++ + + P Y G + PC+DC+ + + + G Sbjct: 60 AADFLNIPIRFVSLKDKYIDMFLNP---KYGYGSSINPCLDCH-ILMLKTAKKIMEEEGF 115 Query: 139 DVLATGH 145 D +ATG Sbjct: 116 DFIATGE 122 >gi|223041195|ref|ZP_03611447.1| tRNA methyl transferase [Campylobacter rectus RM3267] gi|222877554|gb|EEF12683.1| tRNA methyl transferase [Campylobacter rectus RM3267] Length = 328 Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 25/169 (14%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK----RKGSCCAGQDVYDA 76 M+ +V SGG+DS + LL G DV + + + S K R+ + AG ++ Sbjct: 1 MKALVLFSGGLDSMIAIRLLTAQGIDVTAIHIDIGFSGDEKKAEILRRRANEAGAEL--- 57 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 IN+ + E R+ + P + G+ PC+DC+ + F L++ R Sbjct: 58 ----KIINIRN------EYLRDVLFTP---KHGYGKHFNPCIDCHGYM-FKTALAMMRSE 103 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 GA +ATG I R +RR M R + D+ + QL Sbjct: 104 GASFIATGEVIGQRPM----SQRRDAMARVKNAAGDEDDLILRPMSAQL 148 >gi|116628501|ref|YP_821120.1| argininosuccinate synthase [Streptococcus thermophilus LMD-9] gi|161611279|ref|YP_140227.2| argininosuccinate synthase [Streptococcus thermophilus LMG 18311] gi|161936362|ref|YP_142144.2| argininosuccinate synthase [Streptococcus thermophilus CNRZ1066] gi|61211385|sp|Q5LXZ8|ASSY_STRT1 RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|61211386|sp|Q5M2K2|ASSY_STRT2 RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|122266904|sp|Q03IP8|ASSY_STRTD RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|116101778|gb|ABJ66924.1| argininosuccinate synthase [Streptococcus thermophilus LMD-9] gi|312279128|gb|ADQ63785.1| Argininosuccinate synthase [Streptococcus thermophilus ND03] Length = 399 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++A SGG+D+SV LK+D YDVI V + + G+D+ Sbjct: 5 KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV-------------GEGKDLEFIHDKAL 50 Query: 82 TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 T+ V YV D ++ F ++P ++A E P V +R + L+ + + GA Sbjct: 51 TVGAVESYVLDVKDEFAEDYVLPALQAHAYYEQKYPLVSALSRPIIAKKLVEIAHKTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|306826065|ref|ZP_07459401.1| argininosuccinate synthase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431781|gb|EFM34761.1| argininosuccinate synthase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 398 Score = 45.4 bits (106), Expect = 0.014, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +V++A SGG+D+SV LK+D YDVI V + + G+D+ + + Sbjct: 5 KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV-------------GEGKDLEFIHDKAL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 V YV D +E F N ++ ++A E P V +R + L+ + Q GA Sbjct: 51 KVGAVESYVIDVKEEFANDYVLVALQAHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|322375115|ref|ZP_08049629.1| argininosuccinate synthase [Streptococcus sp. C300] gi|321280615|gb|EFX57654.1| argininosuccinate synthase [Streptococcus sp. C300] Length = 398 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +V++A SGG+D+SV LK+D YDVI V + + G+D+ + + Sbjct: 5 KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV-------------GEGKDLEFIHDKAL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 V YV D +E F N ++ ++A E P V +R + L+ + Q GA Sbjct: 51 KVGAVESYVIDVKEEFANDYVLVALQAHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|228477972|ref|ZP_04062583.1| argininosuccinate synthase [Streptococcus salivarius SK126] gi|228250152|gb|EEK09405.1| argininosuccinate synthase [Streptococcus salivarius SK126] Length = 399 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 58/125 (46%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++A SGG+D+SV LK+D YDVI V + + G+D+ Sbjct: 5 KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV-------------GEGKDLEFIHDKAL 50 Query: 82 TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 T+ V YV D ++ F ++P ++A E P V +R + L+ + + GA Sbjct: 51 TVGAVESYVLDVKDEFAEDYVLPALQAHAYYEQKYPLVSALSRPIIAKKLVEIAHKTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|315612255|ref|ZP_07887169.1| argininosuccinate synthase [Streptococcus sanguinis ATCC 49296] gi|315315648|gb|EFU63686.1| argininosuccinate synthase [Streptococcus sanguinis ATCC 49296] Length = 398 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +V++A SGG+D+SV LK+D YDVI V + + G+D+ + + Sbjct: 5 KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV-------------GEGKDLEFIHDKAL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 V YV D +E F N ++ ++A E P V +R + L+ + Q GA Sbjct: 51 KVGAVESYVIDVKEEFANDYVLVALQAHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|293364415|ref|ZP_06611141.1| argininosuccinate synthase [Streptococcus oralis ATCC 35037] gi|307702620|ref|ZP_07639572.1| argininosuccinate synthase [Streptococcus oralis ATCC 35037] gi|291317261|gb|EFE57688.1| argininosuccinate synthase [Streptococcus oralis ATCC 35037] gi|307623736|gb|EFO02721.1| argininosuccinate synthase [Streptococcus oralis ATCC 35037] Length = 398 Score = 45.4 bits (106), Expect = 0.015, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +V++A SGG+D+SV LK+D YDVI V + + G+D+ + + Sbjct: 5 KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV-------------GEGKDLEFIHDKAL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 V YV D +E F N ++ ++A E P V +R + L+ + Q GA Sbjct: 51 KVGAVESYVIDVKEEFANDYVLVALQAHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|331267207|ref|YP_004326837.1| argininosuccinate synthase [Streptococcus oralis Uo5] gi|326683879|emb|CBZ01497.1| argininosuccinate synthase [Streptococcus oralis Uo5] Length = 398 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +V++A SGG+D+SV LK+D YDVI V + + G+D+ + + Sbjct: 5 KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV-------------GEGKDLEFIHDKAL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 V YV D +E F N ++ ++A E P V +R + L+ + Q GA Sbjct: 51 KVGAVESYVIDVKEEFANDYVLVALQAHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|312865679|ref|ZP_07725903.1| argininosuccinate synthase [Streptococcus downei F0415] gi|311098800|gb|EFQ57020.1| argininosuccinate synthase [Streptococcus downei F0415] Length = 396 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++A SGG+D+SV LK+D YDV+ V + + G+D+ Sbjct: 5 KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLEFIHDKAL 50 Query: 82 TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 T+ + YV D ++ F ++P ++A E P V +R V L+ + + GA Sbjct: 51 TVGAIESYVLDVKDEFAEEYVLPALQAHAYYEQKYPLVSALSRPVIAKKLVEIAHKTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|270291925|ref|ZP_06198140.1| argininosuccinate synthase [Streptococcus sp. M143] gi|270279453|gb|EFA25295.1| argininosuccinate synthase [Streptococcus sp. M143] Length = 398 Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 58/125 (46%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +V++A SGG+D+SV LK+D YDVI V + + G+D+ + + Sbjct: 5 KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV-------------GEGKDLEFIHDKAL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 V YV D +E F N ++ ++A E P V +R + L+ + Q GA Sbjct: 51 KVGAVESYVIDVKEEFANDYVLVALQAHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|288553719|ref|YP_003425654.1| argininosuccinate synthase [Bacillus pseudofirmus OF4] gi|288544879|gb|ADC48762.1| argininosuccinate synthase [Bacillus pseudofirmus OF4] Length = 403 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV+A SGG+D+SV L GYDVI V L + G+D+ + Sbjct: 5 KVVLAYSGGLDTSVAIKWLSDKGYDVIAVGLDV-------------GEGKDLDFVKEKAL 51 Query: 82 TINVSH-YVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + S Y D ++ + ++P ++A E P V +R + L+ + Q GA Sbjct: 52 KVGASQSYTIDAKKEYAEEFVLPALQAHALYEQKYPLVSALSRPLISKKLVEIAEQTGAT 111 Query: 140 VLATG 144 +A G Sbjct: 112 AVAHG 116 >gi|322515969|ref|ZP_08068909.1| argininosuccinate synthase [Streptococcus vestibularis ATCC 49124] gi|322125568|gb|EFX96903.1| argininosuccinate synthase [Streptococcus vestibularis ATCC 49124] Length = 403 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 14/124 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++A SGG+D+SV LK+D YDVI V + + G + ++D + Sbjct: 9 KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV----------GEGKNLEFIHD--KALT 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140 V YV D ++ F ++P ++A E P V +R + L+ + + GA Sbjct: 56 VGAVESYVLDVKDEFAEDYVLPALQAHAYYEQKYPLVSALSRPIISKKLVEIAHKTGATT 115 Query: 141 LATG 144 +A G Sbjct: 116 IAHG 119 >gi|312862464|ref|ZP_07722707.1| argininosuccinate synthase [Streptococcus vestibularis F0396] gi|311102107|gb|EFQ60307.1| argininosuccinate synthase [Streptococcus vestibularis F0396] Length = 399 Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 14/124 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++A SGG+D+SV LK+D YDVI V + + G + ++D + Sbjct: 5 KVILAYSGGLDTSVAITWLKKD-YDVIAVCMDV----------GEGKNLEFIHD--KALT 51 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140 V YV D ++ F ++P ++A E P V +R + L+ + + GA Sbjct: 52 VGAVESYVLDVKDEFAEDYVLPALQAHAYYEQKYPLVSALSRPIISKKLVEIAHKTGATT 111 Query: 141 LATG 144 +A G Sbjct: 112 IAHG 115 >gi|299537867|ref|ZP_07051156.1| argininosuccinate synthase [Lysinibacillus fusiformis ZC1] gi|298726846|gb|EFI67432.1| argininosuccinate synthase [Lysinibacillus fusiformis ZC1] Length = 397 Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 15/127 (11%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARR 78 + +VV+A SGG+D+SV LK G+DVI V L + G+D+ + + Sbjct: 3 NKKVVLAYSGGLDTSVAIPWLKEQGWDVIAVCLDV-------------GEGKDLEFVKNK 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137 + Y+ D ++ F + ++ E P V +R + L+ + Q+G Sbjct: 50 ALQVGAIESYMVDAKDEFAEGYALISLQAHTWYEQKYPLVSALSRPLISKKLVEIANQVG 109 Query: 138 ADVLATG 144 AD +A G Sbjct: 110 ADAVAHG 116 >gi|110825739|sp|Q58742|QUEC_METJA RecName: Full=7-cyano-7-deazaguanine synthase; AltName: Full=7-cyano-7-carbaguanine synthase; AltName: Full=Archaeosine biosynthesis protein queC; AltName: Full=PreQ(0) synthase Length = 232 Score = 45.1 bits (105), Expect = 0.020, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 10/71 (14%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+ + +SGG+DS+VV + K GY+V +T Y R A+KR ++ A+++C Sbjct: 1 MKAITVLSGGLDSTVVTLIAKDLGYEVTAITFN-YGQR-AAKR--------EINSAKKIC 50 Query: 81 DTINVSHYVFD 91 + + + H V D Sbjct: 51 EILGIEHIVVD 61 >gi|15669538|ref|NP_248349.1| ExsB [Methanocaldococcus jannaschii DSM 2661] gi|1591989|gb|AAB99356.1| ExsB [Methanocaldococcus jannaschii DSM 2661] Length = 235 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 10/71 (14%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+ + +SGG+DS+VV + K GY+V +T Y R A+KR ++ A+++C Sbjct: 4 MKAITVLSGGLDSTVVTLIAKDLGYEVTAITFN-YGQR-AAKR--------EINSAKKIC 53 Query: 81 DTINVSHYVFD 91 + + + H V D Sbjct: 54 EILGIEHIVVD 64 >gi|150403146|ref|YP_001330440.1| exsB protein [Methanococcus maripaludis C7] gi|167016436|sp|A6VIL3|QUEC_METM7 RecName: Full=7-cyano-7-deazaguanine synthase; AltName: Full=7-cyano-7-carbaguanine synthase; AltName: Full=Archaeosine biosynthesis protein queC; AltName: Full=PreQ(0) synthase gi|150034176|gb|ABR66289.1| exsB protein [Methanococcus maripaludis C7] Length = 233 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 15/96 (15%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR + +SGG+DS+V + K + YD+ VT G Q++ A+++ Sbjct: 1 MRAICVLSGGLDSAVTSLAAKFENYDITTVTFNY----------GQMALNQEIKSAKKIS 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP 116 + +N H+V D N V S GE P P Sbjct: 51 EILNADHHVIDI-----NFVKEFSKSGLNTGEIPEP 81 >gi|156937500|ref|YP_001435296.1| PP-loop domain-containing protein [Ignicoccus hospitalis KIN4/I] gi|156566484|gb|ABU81889.1| PP-loop domain protein [Ignicoccus hospitalis KIN4/I] Length = 383 Score = 44.7 bits (104), Expect = 0.024, Method: Compositional matrix adjust. Identities = 51/190 (26%), Positives = 85/190 (44%), Gaps = 37/190 (19%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL---YNSRKASKRK 64 RL ++L K RV++ +SGG DS + LLK+ G +V+ T+ Y S +A Sbjct: 39 RLKKVELPK-----RVLLGLSGGKDSVALLYLLKKVGTEVVAATVDTVPNYTSLEAE--- 90 Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 A+RV + + V+HY +E + A SY PC C++ Sbjct: 91 ----------LAKRVAEELGVTHYTVYAKELYGFT-----ALSYKKLRR-APCSICSKLR 134 Query: 125 KFSDLLSVTRQLGADVLATGH-------YIRSRLYVGD--DGKRRRIMCRPMDLERDQSY 175 + + L + R+LG + +ATGH + S + GD K+ R + RP R + Sbjct: 135 RHA-LELLARRLGIEYIATGHNMDDMASWALSYILRGDFQSLKKVRPVERPKGPARGRVK 193 Query: 176 FLFATTQQQL 185 LF ++++ Sbjct: 194 PLFWIGEKEI 203 >gi|206901476|ref|YP_002251205.1| tRNA methyl transferase [Dictyoglomus thermophilum H-6-12] gi|206740579|gb|ACI19637.1| tRNA methyl transferase [Dictyoglomus thermophilum H-6-12] Length = 327 Score = 44.7 bits (104), Expect = 0.025, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 26/136 (19%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL--QLYNSRKASKRKGSCCAGQDVYDA 76 K +R + +SGG+DS + L+ + G +VIGVT +N + Sbjct: 2 KKVRAISLISGGLDSILATWLILQQGIEVIGVTFYTPFFN----------------LELP 45 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV--KFSDLLSVTR 134 ++ C+ +N+ +V D E + + P + G+ PC+DC+ + K +LL Sbjct: 46 KKACEFLNIPLHVVDITEEYMAILKNP---RFGYGKNMNPCIDCHTFMVKKAKELLP--- 99 Query: 135 QLGADVLATGHYIRSR 150 + AD + TG + R Sbjct: 100 KFDADFIITGEVLGER 115 >gi|153003258|ref|YP_001377583.1| thiamine biosynthesis protein [Anaeromyxobacter sp. Fw109-5] gi|152026831|gb|ABS24599.1| thiamine biosynthesis protein [Anaeromyxobacter sp. Fw109-5] Length = 351 Score = 44.7 bits (104), Expect = 0.026, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 59/136 (43%), Gaps = 7/136 (5%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQ-DVYD 75 PK + + +SGG+DS++ AL++R G +V VT + + +RKG G + Sbjct: 2 PKQGKAIAMISGGLDSTLALALVRRQGVEVKAVTFYTGFCITETQRRKGGRADGAVPRNE 61 Query: 76 ARRVCDTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 A R + V YV + + ++ P Y G PCVDC R + Sbjct: 62 ALRAAADLEVDIEYVDISGSEYLDMLVHP---KYGYGANANPCVDC-RVFMMRKAKEIME 117 Query: 135 QLGADVLATGHYIRSR 150 GAD + TG + R Sbjct: 118 AEGADFIFTGEVLGQR 133 >gi|294501526|ref|YP_003565226.1| argininosuccinate synthase [Bacillus megaterium QM B1551] gi|295706874|ref|YP_003599949.1| argininosuccinate synthase [Bacillus megaterium DSM 319] gi|294351463|gb|ADE71792.1| argininosuccinate synthase [Bacillus megaterium QM B1551] gi|294804533|gb|ADF41599.1| argininosuccinate synthase [Bacillus megaterium DSM 319] Length = 402 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 26/134 (19%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQD 72 NPK VV+A SGG+D+SV L+ GYDV+ +CC G+D Sbjct: 3 NPK---VVLAYSGGLDTSVAIKWLQEKGYDVV-----------------ACCLDVGEGKD 42 Query: 73 VYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLL 130 + + T+ VS YV D +E + N + ++ E P V +R + L+ Sbjct: 43 LKFVKEKALTVGAVSSYVIDAKEEYANTFALAALQAHTLYEGKYPLVSALSRPLIAKKLV 102 Query: 131 SVTRQLGADVLATG 144 V Q A +A G Sbjct: 103 EVAEQENAVAVAHG 116 >gi|126652180|ref|ZP_01724362.1| argininosuccinate synthase(citrulline--aspartate ligase) [Bacillus sp. B14905] gi|126591088|gb|EAZ85199.1| argininosuccinate synthase(citrulline--aspartate ligase) [Bacillus sp. B14905] Length = 397 Score = 44.7 bits (104), Expect = 0.027, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 15/127 (11%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARR 78 + +VV+A SGG+D+SV LK G+DVI V L + G+D+ + + Sbjct: 3 NKKVVLAYSGGLDTSVAIPWLKEQGWDVIAVCLDV-------------GEGKDLEFVKNK 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137 + Y+ D ++ F + ++ E P V +R + L+ + Q+G Sbjct: 50 ALQVGAIESYMVDAKDEFAENYALISLQAHTWYEQKYPLVSALSRPLISKKLVEIANQVG 109 Query: 138 ADVLATG 144 AD +A G Sbjct: 110 ADAVAHG 116 >gi|313617895|gb|EFR90082.1| argininosuccinate synthase [Listeria innocua FSL S4-378] Length = 407 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 25/130 (19%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77 ++V+A SGG+D+SV L GY+VI +CC G+++ + Sbjct: 8 KIVLAYSGGLDTSVAIQWLVESGYEVI-----------------ACCLDVGEGKNLXXIK 50 Query: 78 RVCDTINVS-HYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 T+ S Y D +E F A+I A +Y G+ PL +R + L+ V R Sbjct: 51 EKAITVGASASYTIDAKEEFAENFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEVAR 109 Query: 135 QLGADVLATG 144 Q GA +A G Sbjct: 110 QEGASAIAHG 119 >gi|307596131|ref|YP_003902448.1| NAD+ synthetase [Vulcanisaeta distributa DSM 14429] gi|307551332|gb|ADN51397.1| NAD+ synthetase [Vulcanisaeta distributa DSM 14429] Length = 289 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 84/204 (41%), Gaps = 47/204 (23%) Query: 24 VVAMSGGVDSSVVAALL-KRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 V+ +SGGVDSSV A LL K G D VIG+ L +D+ DA+ V + Sbjct: 38 VIGLSGGVDSSVTAYLLVKALGRDNVIGLILPY-----------KTTPPEDIRDAKYVAE 86 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 T+ + +Y D R RNA FA S +P D + + +LL R + Sbjct: 87 TLGIKYYYIDI-GRIRNA----FAES-------IPGFDESDKIAVGNLLPRIR------M 128 Query: 142 ATGHYIRSRL--YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +Y +R V G + ++ F D+ P+GD+ K Sbjct: 129 TLLYYFANRFNKVVAGTGDKSELLIG-----------YFTKYGDGGVDI-LPIGDLYKTQ 176 Query: 200 VRDLAREMGL--DIADKSDSQDIC 221 VR L + +GL +IA K S + Sbjct: 177 VRYLGKYLGLPDNIAFKPSSPRLW 200 >gi|296127467|ref|YP_003634719.1| thiamine biosynthesis protein [Brachyspira murdochii DSM 12563] gi|296019283|gb|ADG72520.1| thiamine biosynthesis protein [Brachyspira murdochii DSM 12563] Length = 352 Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust. Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 6/127 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K + ++ +SGG+DS +V A+LKR+ DV+ L+ + S K + A++ Sbjct: 3 KKAKAILLLSGGLDSMLVGAILKRENIDVLA--LRFVTGLEYSVIKEELLNIYNEDPAKK 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D +N+ ++ + + + P Y G PC+DC+ + + + G Sbjct: 61 AADFLNIPIRFVSLKDVYLDMFLNP---KYGYGSAINPCLDCH-ILMLKTAKKIMEEEGF 116 Query: 139 DVLATGH 145 D +ATG Sbjct: 117 DFIATGE 123 >gi|169828875|ref|YP_001699033.1| argininosuccinate synthase [Lysinibacillus sphaericus C3-41] gi|168993363|gb|ACA40903.1| Argininosuccinate synthase [Lysinibacillus sphaericus C3-41] Length = 403 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 15/127 (11%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARR 78 + +VV+A SGG+D+SV LK G+DVI V L + G+D+ + + Sbjct: 9 NKKVVLAYSGGLDTSVAIPWLKEQGWDVIAVCLDV-------------GEGKDLEFVKNK 55 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137 + Y+ D ++ F + ++ E P V +R + L+ + Q+G Sbjct: 56 ALQVGAIESYMVDAKDEFAENYALISLQAHTWYEQKYPLVSALSRPLISKKLVEIANQVG 115 Query: 138 ADVLATG 144 AD +A G Sbjct: 116 ADAVAHG 122 >gi|45357789|ref|NP_987346.1| ExsB family transcriptional regulator [Methanococcus maripaludis S2] gi|74555941|sp|Q6M0P3|QUEC_METMP RecName: Full=7-cyano-7-deazaguanine synthase; AltName: Full=7-cyano-7-carbaguanine synthase; AltName: Full=Archaeosine biosynthesis protein queC; AltName: Full=PreQ(0) synthase gi|45047349|emb|CAF29782.1| conserved hypothetical protein [Methanococcus maripaludis S2] Length = 233 Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 10/71 (14%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+ + +SGG+DS+V + K YD+ VT G Q++ A+++ Sbjct: 1 MKAICVLSGGLDSAVTSMFAKSKNYDISTVTFNY----------GQMALNQEIKSAKKIS 50 Query: 81 DTINVSHYVFD 91 D +N H+V D Sbjct: 51 DILNADHHVID 61 >gi|284044933|ref|YP_003395273.1| NAD+ synthetase [Conexibacter woesei DSM 14684] gi|283949154|gb|ADB51898.1| NAD+ synthetase [Conexibacter woesei DSM 14684] Length = 587 Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 12/133 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVV+ +SGGVDS++VA + D GV + + S +S+ + DAR++ D Sbjct: 326 RVVLGLSGGVDSALVAC-VAVDALGPDGVAVAVMPSPYSSQETQA--------DARQLAD 376 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + V Y F+ + R A A ++A + L + ++ + L++++ + G VL Sbjct: 377 NLGVERYEFNIQPAMR-AYASTLADTFAGRKPDLTEENLQARIRGNLLMALSNKFGWLVL 435 Query: 142 ATGHYIRSRLYVG 154 ATG+ +S + VG Sbjct: 436 ATGN--KSEMSVG 446 >gi|298501904|ref|YP_003723844.1| argininosuccinate synthase [Streptococcus pneumoniae TCH8431/19A] gi|298237499|gb|ADI68630.1| argininosuccinate synthase [Streptococcus pneumoniae TCH8431/19A] Length = 154 Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 16/132 (12%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV- 73 +KN +V++A SGG+D+SV LK+D YDV+ V + + G+D+ Sbjct: 13 EKNMSKEKVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLD 58 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSV 132 + + V YV D ++ F ++ S+A E P V +R + L+ + Sbjct: 59 FIHDKALKVGAVESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEI 118 Query: 133 TRQLGADVLATG 144 Q GA +A G Sbjct: 119 AHQTGATTIAHG 130 >gi|152990536|ref|YP_001356258.1| ExsB family transcriptional regulator [Nitratiruptor sp. SB155-2] gi|189038929|sp|A6Q342|QUEC_NITSB RecName: Full=7-cyano-7-deazaguanine synthase; AltName: Full=7-cyano-7-carbaguanine synthase; AltName: Full=PreQ(0) synthase; AltName: Full=Queuosine biosynthesis protein queC gi|151422397|dbj|BAF69901.1| transcriptional regulator, ExsB family [Nitratiruptor sp. SB155-2] Length = 220 Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust. Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 24/197 (12%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+ VV +SGG+DSS+ A + K+DGY++I V Y R K ++ R + Sbjct: 1 MKAVVILSGGMDSSITAYMAKKDGYEIIAVHFN-YGQRTEQK---------ELEAFRAIA 50 Query: 81 DTINVSHYVFD---YEERFRNAVI---VPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 +N Y D +E+ +A+I + P+ V + S ++ Sbjct: 51 GELNAKTYEIDLPFFEQIGASALIDTNIAIPKQGIEPGIPVTYVPFRNGIFLSVAAAIAE 110 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 + GAD + G V ++ CR +++ +S T + ++ PL Sbjct: 111 KEGADSIYIG--------VVEEDSSGYPDCREDFIQKMESAINAGTKPETDIKIKTPLIH 162 Query: 195 MKKESVRDLAREMGLDI 211 ++KE + L +G+ + Sbjct: 163 LRKEDIVQLGLSLGVPL 179 >gi|134299514|ref|YP_001113010.1| NAD+ synthetase [Desulfotomaculum reducens MI-1] gi|134052214|gb|ABO50185.1| NH(3)-dependent NAD(+) synthetase [Desulfotomaculum reducens MI-1] Length = 241 Score = 44.3 bits (103), Expect = 0.032, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 84/211 (39%), Gaps = 56/211 (26%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV +SGG+DSS VAAL KR D V+GV + Y++ +D DA+ + Sbjct: 24 AVVGLSGGIDSSCVAALCKRAFPDNVLGVIMPCYSN------------PEDAADAKLLAK 71 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 T++V + + +E F + Y L V+ ++ + L + + V+ Sbjct: 72 TLSVPYEEIELDEPFDWFIQRLTGQDYDIHSCDLSIVNIKPRLRMTTLYYYSNRHNYLVV 131 Query: 142 AT--------GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 T GHY + GD G D+ PL Sbjct: 132 GTTNKAEMVVGHYTK----YGDGG----------------------------ADI-LPLA 158 Query: 194 DMKKESVRDLAREMGLD--IADKSDSQDICF 222 ++ K VR LA+E+G+ I DK+ S + F Sbjct: 159 NLAKSEVRALAKELGIPQRIIDKAPSAGLWF 189 >gi|322374153|ref|ZP_08048687.1| argininosuccinate synthase [Streptococcus sp. C150] gi|321277119|gb|EFX54190.1| argininosuccinate synthase [Streptococcus sp. C150] Length = 399 Score = 44.3 bits (103), Expect = 0.033, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 58/125 (46%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++A SGG+D+SV LK+D YDV+ V + + G+D+ Sbjct: 5 KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLEFIHDKAL 50 Query: 82 TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 T+ + YV D ++ F ++P ++A E P V +R + L+ + + GA Sbjct: 51 TVGAIESYVLDVKDEFAEDYVLPALQAHAYYEQKYPLVSALSRPIISKKLVEIAHKTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|146319671|ref|YP_001199383.1| argininosuccinate synthase [Streptococcus suis 05ZYH33] gi|145690477|gb|ABP90983.1| argininosuccinate synthase (citrulline-asparate ligase) [Streptococcus suis 05ZYH33] gi|292559287|gb|ADE32288.1| argininosuccinate synthase [Streptococcus suis GZ1] Length = 407 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 14/124 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++++A SGG+D+SV A LK+D YDVI V + + G + ++D + Sbjct: 15 KLILAYSGGLDTSVAIAWLKKD-YDVIAVCMDV----------GEGKNLEFIHD--KALS 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140 + +V D +E F ++P ++A E P V +R + L+ + + GA Sbjct: 62 IGAIESHVLDVKEEFAQEYVLPALQAHAYYEQKYPLVSALSRPLISKKLVEMAHKTGATT 121 Query: 141 LATG 144 +A G Sbjct: 122 IAHG 125 >gi|91203861|emb|CAJ71514.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 340 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 58/129 (44%), Gaps = 11/129 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 + + +SGG+DS++ +++ G +VI + R S GSC +A +V + Sbjct: 3 KALALLSGGLDSTLAIRVIQEQGIEVIALNFVTVFCRCTS--HGSC-----KLEAVKVSE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + V + +RF V P + G+ PC+DC + F R++GAD + Sbjct: 56 KFGIPIKVINTTDRFLEIVKKP---KHGYGKHMNPCIDCRINI-FHAAGDYMREIGADFI 111 Query: 142 ATGHYIRSR 150 TG + R Sbjct: 112 ITGEVLGQR 120 >gi|148985461|ref|ZP_01818666.1| argininosuccinate synthase [Streptococcus pneumoniae SP3-BS71] gi|147922419|gb|EDK73539.1| argininosuccinate synthase [Streptococcus pneumoniae SP3-BS71] Length = 154 Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust. Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 16/132 (12%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV- 73 +KN +V++A SGG+D+SV LK+D YDV+ V + + G+D+ Sbjct: 13 EKNMSKEKVILAYSGGLDTSVAITWLKKD-YDVVSVCMDV-------------GEGKDLD 58 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSV 132 + + V YV D ++ F ++ S+A E P V +R + L+ + Sbjct: 59 FIHDKALKVGAVESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEI 118 Query: 133 TRQLGADVLATG 144 Q GA +A G Sbjct: 119 AHQTGATTIAHG 130 >gi|183601736|ref|ZP_02963106.1| argininosuccinate synthase [Bifidobacterium animalis subsp. lactis HN019] gi|219683732|ref|YP_002470115.1| argininosuccinate synthase [Bifidobacterium animalis subsp. lactis AD011] gi|241190766|ref|YP_002968160.1| argininosuccinate synthase [Bifidobacterium animalis subsp. lactis Bl-04] gi|241196172|ref|YP_002969727.1| argininosuccinate synthase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183219342|gb|EDT89983.1| argininosuccinate synthase [Bifidobacterium animalis subsp. lactis HN019] gi|219621382|gb|ACL29539.1| argininosuccinate synthase [Bifidobacterium animalis subsp. lactis AD011] gi|240249158|gb|ACS46098.1| argininosuccinate synthase [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250726|gb|ACS47665.1| argininosuccinate synthase [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178502|gb|ADC85748.1| Argininosuccinate synthase [Bifidobacterium animalis subsp. lactis BB-12] gi|295793755|gb|ADG33290.1| argininosuccinate synthase [Bifidobacterium animalis subsp. lactis V9] Length = 412 Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 57/135 (42%), Gaps = 23/135 (17%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTL---QLYNSRKASKRKGSCCAG 70 DKN R+V+A SGG+D+SV LK R G DV+ V+L Q S + K + C Sbjct: 3 DKN----RIVLAYSGGLDTSVAIPYLKDRTGKDVVAVSLDVGQGGESLETIKERALACGA 58 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDL 129 V Y+ D + F N + + A E P V +R + L Sbjct: 59 --------------VEAYIVDARDEFANEYCMQALKANAMYEGVYPLVSAISRPLITKHL 104 Query: 130 LSVTRQLGADVLATG 144 + Q GAD +A G Sbjct: 105 VRAAHQFGADTIAHG 119 >gi|237751996|ref|ZP_04582476.1| tRNA methyltransferase [Helicobacter winghamensis ATCC BAA-430] gi|229376563|gb|EEO26654.1| tRNA methyltransferase [Helicobacter winghamensis ATCC BAA-430] Length = 325 Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust. Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 13/130 (10%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+ + SGG+DS + ++K G DV+ + L + K K + R+ Sbjct: 1 MKALALFSGGLDSLLAIKIIKDMGVDVLALHLNIGFGAKRDKSE----------ILRQRL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I V + D ++F + V+ F + G+ PC+DC+ + FS L + GA Sbjct: 51 DQIGVELKIVDIRKQFFDDVL--FKPKFGYGKYFNPCIDCHANM-FSHALGMLESEGASF 107 Query: 141 LATGHYIRSR 150 + +G + R Sbjct: 108 VISGEVLGQR 117 >gi|229180948|ref|ZP_04308283.1| Argininosuccinate synthase [Bacillus cereus 172560W] gi|228602505|gb|EEK59991.1| Argininosuccinate synthase [Bacillus cereus 172560W] Length = 411 Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 15/128 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDAR 77 K +VV+A SGG+D+SV L+ YD+I + L L G+D+ + Sbjct: 12 KKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 58 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136 + + Y+ D +E F N + ++ E P V +R + L+ + Q Sbjct: 59 KALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 118 Query: 137 GADVLATG 144 GA +A G Sbjct: 119 GATAVAHG 126 >gi|229198789|ref|ZP_04325485.1| Argininosuccinate synthase [Bacillus cereus m1293] gi|228584722|gb|EEK42844.1| Argininosuccinate synthase [Bacillus cereus m1293] Length = 411 Score = 43.9 bits (102), Expect = 0.041, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 15/128 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDAR 77 K +VV+A SGG+D+SV L+ YD+I + L L G+D+ + Sbjct: 12 KKKKVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKE 58 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136 + + Y+ D +E F N + ++ E P V +R + L+ + Q Sbjct: 59 KALSVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQE 118 Query: 137 GADVLATG 144 GA +A G Sbjct: 119 GATAVAHG 126 >gi|146321866|ref|YP_001201577.1| argininosuccinate synthase [Streptococcus suis 98HAH33] gi|253752668|ref|YP_003025809.1| argininosuccinate synthase [Streptococcus suis SC84] gi|253754494|ref|YP_003027635.1| argininosuccinate synthase [Streptococcus suis P1/7] gi|253756427|ref|YP_003029567.1| argininosuccinate synthase [Streptococcus suis BM407] gi|166221024|sp|A4W488|ASSY_STRS2 RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|172045627|sp|A4VXZ4|ASSY_STRSY RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|145692672|gb|ABP93177.1| argininosuccinate synthase (citrulline-asparate ligase) [Streptococcus suis 98HAH33] gi|251816957|emb|CAZ52606.1| argininosuccinate synthase [Streptococcus suis SC84] gi|251818891|emb|CAZ56734.1| argininosuccinate synthase [Streptococcus suis BM407] gi|251820740|emb|CAR47502.1| argininosuccinate synthase [Streptococcus suis P1/7] gi|319759085|gb|ADV71027.1| argininosuccinate synthase [Streptococcus suis JS14] Length = 397 Score = 43.9 bits (102), Expect = 0.043, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 59/124 (47%), Gaps = 14/124 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++++A SGG+D+SV A LK+D YDVI V + + G + ++D + Sbjct: 5 KLILAYSGGLDTSVAIAWLKKD-YDVIAVCMDV----------GEGKNLEFIHD--KALS 51 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140 + +V D +E F ++P ++A E P V +R + L+ + + GA Sbjct: 52 IGAIESHVLDVKEEFAQEYVLPALQAHAYYEQKYPLVSALSRPLISKKLVEMAHKTGATT 111 Query: 141 LATG 144 +A G Sbjct: 112 IAHG 115 >gi|304321760|ref|YP_003855403.1| argininosuccinate synthase [Parvularcula bermudensis HTCC2503] gi|303300662|gb|ADM10261.1| argininosuccinate synthase [Parvularcula bermudensis HTCC2503] Length = 402 Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 12/125 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV+A SGG+D+S LK+ GY+VI + A A R + Sbjct: 4 KVVLAFSGGLDTSYCVLALKKAGYEVITYFVDTAGPGSAEASPEEVAA--------RAKE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPF--ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 V H+ + +R + ++VP A + G PL C D R + + + + +GA Sbjct: 56 LGAVDHHNIEASQRLWDGIVVPLIQAGEWRQGRYPLLCAD--RYLIVEAGIELAKSVGAG 113 Query: 140 VLATG 144 +A G Sbjct: 114 AIAHG 118 >gi|261403835|ref|YP_003248059.1| exsB protein [Methanocaldococcus vulcanius M7] gi|261370828|gb|ACX73577.1| exsB protein [Methanocaldococcus vulcanius M7] Length = 232 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 16/102 (15%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+ + +SGG+DS+V + K GY++ +T +KA KR ++ A+++C Sbjct: 1 MKAITVLSGGLDSTVATLIAKDRGYEMTAITFNY--GQKAVKR--------EINSAKKIC 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122 + + + H V D + F S E +P + N Sbjct: 51 EILGIKHIVVDL------PFVKQFGKSSLITEKEIPTLKMNE 86 >gi|156937428|ref|YP_001435224.1| argininosuccinate synthase [Ignicoccus hospitalis KIN4/I] gi|172044465|sp|A8AA65|ASSY_IGNH4 RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|156566412|gb|ABU81817.1| argininosuccinate synthase [Ignicoccus hospitalis KIN4/I] Length = 396 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 20/128 (15%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTL---QLYNSRKASKRKGSCCAGQDVYDAR 77 ++V+A SGG+D+SV A LK G +VI VT+ Q + ++ +R A + Sbjct: 3 KIVLAYSGGLDTSVAVAWLKEKFGAEVITVTVDVGQKEDFKEIEERAYKAGASK------ 56 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQL 136 HY+ D +E F N I P + A E P R + ++ V R+ Sbjct: 57 ---------HYLIDAKEEFVNKYIKPAIIANALYEEVYPLGTALARPLIGEKVIEVARKE 107 Query: 137 GADVLATG 144 GAD +A G Sbjct: 108 GADAVAHG 115 >gi|223933968|ref|ZP_03625926.1| Argininosuccinate synthase [Streptococcus suis 89/1591] gi|330833642|ref|YP_004402467.1| argininosuccinate synthase [Streptococcus suis ST3] gi|223897360|gb|EEF63763.1| Argininosuccinate synthase [Streptococcus suis 89/1591] gi|329307865|gb|AEB82281.1| Argininosuccinate synthase [Streptococcus suis ST3] Length = 397 Score = 43.9 bits (102), Expect = 0.047, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 ++++A SGG+D+SV A LK+D YDVI V + + G+D+ + + Sbjct: 5 KLILAYSGGLDTSVAIAWLKKD-YDVIAVCMDV-------------GEGKDLDFIHDKAL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + +V D +E F ++P ++A E P V +R + L+ + + GA Sbjct: 51 SIGAIESHVLDVKEEFAQEYVLPALQAHAYYEQKYPLVSALSRPLISKKLVEMAHKTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|288818608|ref|YP_003432956.1| thiamine biosynthesis protein [Hydrogenobacter thermophilus TK-6] gi|288788008|dbj|BAI69755.1| thiamine biosynthesis protein [Hydrogenobacter thermophilus TK-6] gi|308752199|gb|ADO45682.1| Queuosine synthesis [Hydrogenobacter thermophilus TK-6] Length = 347 Score = 43.9 bits (102), Expect = 0.052, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 12/106 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDV------IGVTLQLYNSRKASKRKGSCCAGQDVY 74 +R V +SGG+DSS+ LLK G ++ G + + R KR+ Q V Sbjct: 4 VRAVALLSGGLDSSLAVHLLKDQGVEIKALYFYTGFCITEHKRRLGLKRED---GQQYVN 60 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 A R + V V D E + N V+ P Y G+ PC+DC Sbjct: 61 PAFRAAAQLKVPIEVVDVSEEYFNIVLNP---KYGYGKNVNPCIDC 103 >gi|304392676|ref|ZP_07374616.1| argininosuccinate synthase [Ahrensia sp. R2A130] gi|303295306|gb|EFL89666.1| argininosuccinate synthase [Ahrensia sp. R2A130] Length = 417 Score = 43.5 bits (101), Expect = 0.054, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 11/126 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+A SGG+D+S++ L+ + G +V+ T L S G+++ +A+R Sbjct: 11 KVVLAYSGGLDTSIILKWLQTEYGAEVVTFTADLGQS--------EIEGGKELEEAKRKA 62 Query: 81 DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + ++ Y+ D E F + P + A E L R + L+ + R+ GA Sbjct: 63 ENLGITEIYIEDVREEFIRDFVFPMFRANAVYEGVYLLGTSIARPLISKRLIEIARETGA 122 Query: 139 DVLATG 144 D +A G Sbjct: 123 DAIAHG 128 >gi|169840824|ref|ZP_02873937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [candidate division TM7 single-cell isolate TM7a] Length = 65 Score = 43.5 bits (101), Expect = 0.056, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 3/61 (4%) Query: 144 GHYIR--SRLYVGDDGKR-RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 GHY R ++GKR + M R +D +DQ+YFL +Q+QL + FPLG+ K + Sbjct: 5 GHYARIIHEEVEDENGKRIKSTMLRGVDDNKDQTYFLCQLSQEQLEKVLFPLGEYTKPQI 64 Query: 201 R 201 R Sbjct: 65 R 65 >gi|289191719|ref|YP_003457660.1| exsB protein [Methanocaldococcus sp. FS406-22] gi|288938169|gb|ADC68924.1| exsB protein [Methanocaldococcus sp. FS406-22] Length = 232 Score = 43.5 bits (101), Expect = 0.058, Method: Compositional matrix adjust. Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 10/71 (14%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+ + +SGG+DS+V + K GY+V +T Y R A+KR ++ A+++C Sbjct: 1 MKAITVLSGGLDSTVATLIAKDLGYEVTAITFN-YGQR-AAKR--------EINSAKKIC 50 Query: 81 DTINVSHYVFD 91 + + + H V D Sbjct: 51 EILGIEHIVVD 61 >gi|134046496|ref|YP_001097981.1| exsB protein [Methanococcus maripaludis C5] gi|167016435|sp|A4FZY3|QUEC_METM5 RecName: Full=7-cyano-7-deazaguanine synthase; AltName: Full=7-cyano-7-carbaguanine synthase; AltName: Full=Archaeosine biosynthesis protein queC; AltName: Full=PreQ(0) synthase gi|132664121|gb|ABO35767.1| exsB protein [Methanococcus maripaludis C5] Length = 233 Score = 43.5 bits (101), Expect = 0.060, Method: Compositional matrix adjust. Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 10/71 (14%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+ + +SGG+DS+V + + K + YD+ VT G Q++ A ++ Sbjct: 1 MKAICVLSGGLDSAVTSLVAKSENYDITTVTFNY----------GQMALNQEIKSAEKIS 50 Query: 81 DTINVSHYVFD 91 + +N H+V D Sbjct: 51 EILNADHHVID 61 >gi|46191095|ref|ZP_00120525.2| COG0137: Argininosuccinate synthase [Bifidobacterium longum DJO10A] gi|189439673|ref|YP_001954754.1| argininosuccinate synthase [Bifidobacterium longum DJO10A] gi|239622229|ref|ZP_04665260.1| argininosuccinate synthase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312133074|ref|YP_004000413.1| argg [Bifidobacterium longum subsp. longum BBMN68] gi|317481820|ref|ZP_07940848.1| arginosuccinate synthase [Bifidobacterium sp. 12_1_47BFAA] gi|322688764|ref|YP_004208498.1| argininosuccinate synthase [Bifidobacterium longum subsp. infantis 157F] gi|229889862|sp|B3DSY7|ASSY_BIFLD RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|189428108|gb|ACD98256.1| Argininosuccinate synthase [Bifidobacterium longum DJO10A] gi|239514226|gb|EEQ54093.1| argininosuccinate synthase [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517163|emb|CBK70779.1| argininosuccinate synthase [Bifidobacterium longum subsp. longum F8] gi|311774067|gb|ADQ03555.1| ArgG [Bifidobacterium longum subsp. longum BBMN68] gi|316916757|gb|EFV38151.1| arginosuccinate synthase [Bifidobacterium sp. 12_1_47BFAA] gi|320460100|dbj|BAJ70720.1| argininosuccinate synthase [Bifidobacterium longum subsp. infantis 157F] Length = 412 Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 19/130 (14%) Query: 20 DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTL---QLYNSRKASKRKGSCCAGQDVYD 75 + R+V+A SGG+D+SV + LK R G DV+ V+L Q S + K++ C Sbjct: 4 NKRIVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKQRALACGA----- 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTR 134 V YV D + F N + + A E P V +R + L+ Sbjct: 59 ---------VESYVVDARDEFANEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAH 109 Query: 135 QLGADVLATG 144 Q GAD ++ G Sbjct: 110 QFGADTISHG 119 >gi|259503176|ref|ZP_05746078.1| argininosuccinate synthase [Lactobacillus antri DSM 16041] gi|259168833|gb|EEW53328.1| argininosuccinate synthase [Lactobacillus antri DSM 16041] Length = 414 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 59/128 (46%), Gaps = 21/128 (16%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQD--VYDAR 77 ++V+A SGG+D+SV A L GYDVI + + +A ++K + V DA+ Sbjct: 10 KIVLAYSGGLDTSVAIAWLMNKGYDVIACCIDVGEGLDLEAIQQKAAAIGAWKSVVIDAK 69 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136 R D+ E+F ++P +A E P V +R + L+ V ++ Sbjct: 70 R------------DFAEQF----VLPALQVHAMYEQKYPLVSALSRPLIVQKLVGVAKEY 113 Query: 137 GADVLATG 144 GA +A G Sbjct: 114 GATAIAHG 121 >gi|227546226|ref|ZP_03976275.1| argininosuccinate synthase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|296453804|ref|YP_003660947.1| argininosuccinate synthase [Bifidobacterium longum subsp. longum JDM301] gi|322690756|ref|YP_004220326.1| argininosuccinate synthase [Bifidobacterium longum subsp. longum JCM 1217] gi|227213207|gb|EEI81079.1| argininosuccinate synthase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|296183235|gb|ADH00117.1| Argininosuccinate synthase [Bifidobacterium longum subsp. longum JDM301] gi|320455612|dbj|BAJ66234.1| argininosuccinate synthase [Bifidobacterium longum subsp. longum JCM 1217] Length = 412 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 19/130 (14%) Query: 20 DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTL---QLYNSRKASKRKGSCCAGQDVYD 75 + R+V+A SGG+D+SV + LK R G DV+ V+L Q S + K++ C Sbjct: 4 NKRIVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKQRALACGA----- 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTR 134 V YV D + F N + + A E P V +R + L+ Sbjct: 59 ---------VESYVVDARDEFANEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAH 109 Query: 135 QLGADVLATG 144 Q GAD ++ G Sbjct: 110 QFGADTISHG 119 >gi|225619893|ref|YP_002721150.1| thiamine biosynthesis protein [Brachyspira hyodysenteriae WA1] gi|225214712|gb|ACN83446.1| thiamine biosynthesis protein [Brachyspira hyodysenteriae WA1] Length = 356 Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust. Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 6/127 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K + ++ +SGG+DS +V A+LKR+ DV+ + K + +D A++ Sbjct: 4 KKAKAILLLSGGLDSMLVGAILKRENIDVLALRFVTGLEYAVIKEELLEIYSED--PAKK 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D +N+ ++ + + + P Y G PC+DC+ + + + G Sbjct: 62 AADFLNIPIRFVSLKDVYLDMFLNP---KYGYGSAINPCLDCH-ILMLKTAKKIMEEEGF 117 Query: 139 DVLATGH 145 D +ATG Sbjct: 118 DFIATGE 124 >gi|213692741|ref|YP_002323327.1| Argininosuccinate synthase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254807508|sp|B7GTP0|ASSY_BIFLI RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|213524202|gb|ACJ52949.1| Argininosuccinate synthase [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458899|dbj|BAJ69520.1| argininosuccinate synthase [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 412 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 19/130 (14%) Query: 20 DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTL---QLYNSRKASKRKGSCCAGQDVYD 75 + R+V+A SGG+D+SV + LK R G DV+ V+L Q S + K++ C Sbjct: 4 NKRIVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKQRALACGA----- 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTR 134 V YV D + F N + + A E P V +R + L+ Sbjct: 59 ---------VESYVVDARDEFANEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAH 109 Query: 135 QLGADVLATG 144 Q GAD ++ G Sbjct: 110 QFGADTISHG 119 >gi|23465627|ref|NP_696230.1| argininosuccinate synthase [Bifidobacterium longum NCC2705] gi|30172866|sp|Q8G5F2|ASSY_BIFLO RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|23326299|gb|AAN24866.1| argininosuccinate synthase [Bifidobacterium longum NCC2705] Length = 412 Score = 43.5 bits (101), Expect = 0.067, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 19/130 (14%) Query: 20 DMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTL---QLYNSRKASKRKGSCCAGQDVYD 75 + R+V+A SGG+D+SV + LK R G DV+ V+L Q S + K++ C Sbjct: 4 NKRIVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKQRALACGA----- 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTR 134 V YV D + F N + + A E P V +R + L+ Sbjct: 59 ---------VESYVVDARDEFANEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAH 109 Query: 135 QLGADVLATG 144 Q GAD ++ G Sbjct: 110 QFGADTISHG 119 >gi|116515666|ref|YP_815608.1| argininosuccinate synthase [Streptococcus pneumoniae D39] gi|237649603|ref|ZP_04523855.1| argininosuccinate synthase [Streptococcus pneumoniae CCRI 1974] gi|237821347|ref|ZP_04597192.1| argininosuccinate synthase [Streptococcus pneumoniae CCRI 1974M2] gi|34921753|sp|Q8DRI5|ASSY_STRR6 RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|122279483|sp|Q04MW7|ASSY_STRP2 RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|116076242|gb|ABJ53962.1| argininosuccinate synthase [Streptococcus pneumoniae D39] Length = 398 Score = 43.1 bits (100), Expect = 0.070, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 21/150 (14%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +V++A SGG+D+SV LK+D YDV+ V + + G+D+ + + Sbjct: 5 KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLDFIHDKAL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 V YV D ++ F ++ S+A E P V +R + L+ + Q+GA Sbjct: 51 KVGAVESYVIDVKDEFATDYVLVAHQSHAYYEQKYPLVSALSRPLISKKLVEIAHQIGAT 110 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDL 169 +A G + G+D R + +DL Sbjct: 111 TIAHGCTGK-----GNDQVRFEVSIAALDL 135 >gi|255030613|ref|ZP_05302564.1| argininosuccinate synthase [Listeria monocytogenes LO28] Length = 360 Score = 43.1 bits (100), Expect = 0.070, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 25/130 (19%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77 ++V+A SGG+D+SV L GY+VI +CC G+++ + Sbjct: 7 KIVLAYSGGLDTSVAIQWLVESGYEVI-----------------ACCLDVGEGKNLDFIK 49 Query: 78 RVCDTINVSH-YVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 T+ S Y D +E F A+I A +Y G+ PL +R + L+ V R Sbjct: 50 EKAITVGASESYTIDAKEEFAEDFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEVAR 108 Query: 135 QLGADVLATG 144 Q GA +A G Sbjct: 109 QEGASAIAHG 118 >gi|325841863|ref|ZP_08167494.1| GMP synthase (glutamine-hydrolyzing) [Turicibacter sp. HGF1] gi|325489818|gb|EGC92171.1| GMP synthase (glutamine-hydrolyzing) [Turicibacter sp. HGF1] Length = 511 Score = 43.1 bits (100), Expect = 0.074, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 79/195 (40%), Gaps = 42/195 (21%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V+ A+SGGVDSSVVAAL+ R IG L RKG + + +D + Sbjct: 219 VLCALSGGVDSSVVAALIHR----AIGDQLTCMFVDHGLLRKGEAESVVETFDGK----- 269 Query: 83 INVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGA 138 N++ D +ERF N V P G + C D + K D+ + + L Sbjct: 270 FNMNFIKIDAQERFLNKLKGVSDPEQKRKIIGNEFVYCFD-EESAKLKDMKFLAQGTLYT 328 Query: 139 DVLATG----HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 D++ +G I+S VG P D+E +L PL Sbjct: 329 DIIESGTDTAQTIKSHHNVGG---------LPEDME---------------FELIEPLNT 364 Query: 195 MKKESVRDLAREMGL 209 + K+ VR L E+GL Sbjct: 365 LFKDEVRQLGLELGL 379 >gi|85859756|ref|YP_461958.1| putative tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase / fibronectin/fibrinogen-binding protein [Syntrophus aciditrophicus SB] gi|85722847|gb|ABC77790.1| putative tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase / fibronectin/fibrinogen-binding protein [Syntrophus aciditrophicus SB] Length = 333 Score = 43.1 bits (100), Expect = 0.075, Method: Compositional matrix adjust. Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 22/129 (17%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQ--LYNSRKASKRKGSCCAGQDVYDARRVCD 81 + SGG+DS + +++ G +V+G+T + ++SRKA DA R Sbjct: 14 IAVFSGGLDSIIAVKVIQDQGIEVVGLTFETPFFSSRKAR-------------DAAR--- 57 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + V D E ++ P Y G+ PC+DC+ T+ +LGAD + Sbjct: 58 KIGLPLKVLDITEEHLKMLMNP---RYGYGKNLNPCIDCH-TLMLKIAGDKMSELGADFI 113 Query: 142 ATGHYIRSR 150 TG + R Sbjct: 114 FTGEVLGQR 122 >gi|293374623|ref|ZP_06620939.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein [Turicibacter sanguinis PC909] gi|292646773|gb|EFF64767.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein [Turicibacter sanguinis PC909] Length = 511 Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust. Identities = 55/195 (28%), Positives = 79/195 (40%), Gaps = 42/195 (21%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V+ A+SGGVDSSVVAAL+ R IG L RKG + + +D + Sbjct: 219 VLCALSGGVDSSVVAALIHR----AIGDQLTCMFVDHGLLRKGEAESVVETFDGK----- 269 Query: 83 INVSHYVFDYEERFRN---AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGA 138 N++ D +ERF N V P G + C D + K D+ + + L Sbjct: 270 FNMNFIKIDAQERFLNKLKGVSDPEQKRKIIGNEFVYCFD-EESAKLKDMKFLAQGTLYT 328 Query: 139 DVLATG----HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 D++ +G I+S VG P D+E +L PL Sbjct: 329 DIIESGTDTAQTIKSHHNVGG---------LPEDME---------------FELIEPLNT 364 Query: 195 MKKESVRDLAREMGL 209 + K+ VR L E+GL Sbjct: 365 LFKDEVRQLGLELGL 379 >gi|313607645|gb|EFR83912.1| argininosuccinate synthase [Listeria monocytogenes FSL F2-208] Length = 407 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 25/130 (19%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77 ++V+A SGG+D+SV L GY+VI +CC G+++ + Sbjct: 8 KIVLAYSGGLDTSVAIQWLVESGYEVI-----------------ACCLDVGEGKNLDFIK 50 Query: 78 RVCDTINVSH-YVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 T+ S Y D +E F A+I A +Y G+ PL +R + L+ V R Sbjct: 51 EKAITVGASESYTIDAKEEFAEDFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEVAR 109 Query: 135 QLGADVLATG 144 Q GA +A G Sbjct: 110 QEGASAIAHG 119 >gi|148996520|ref|ZP_01824238.1| argininosuccinate synthase [Streptococcus pneumoniae SP11-BS70] gi|168577052|ref|ZP_02722881.1| argininosuccinate synthase [Streptococcus pneumoniae MLV-016] gi|307066786|ref|YP_003875752.1| argininosuccinate synthase [Streptococcus pneumoniae AP200] gi|147757095|gb|EDK64134.1| argininosuccinate synthase [Streptococcus pneumoniae SP11-BS70] gi|183577310|gb|EDT97838.1| argininosuccinate synthase [Streptococcus pneumoniae MLV-016] gi|306408323|gb|ADM83750.1| Argininosuccinate synthase [Streptococcus pneumoniae AP200] Length = 398 Score = 43.1 bits (100), Expect = 0.078, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +V++A SGG+D+SV LK+D YDV+ V + + G+D+ + + Sbjct: 5 KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLDFIHDKAL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 V YV D ++ F ++ S+A E P V +R + L+ + Q+GA Sbjct: 51 KVGAVESYVIDVKDEFATDYVLVAHQSHAYYEQKYPLVSALSRPLISKKLVEIAHQIGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|306834436|ref|ZP_07467550.1| argininosuccinate synthase [Streptococcus bovis ATCC 700338] gi|325979276|ref|YP_004288992.1| argininosuccinate synthase [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|304423422|gb|EFM26574.1| argininosuccinate synthase [Streptococcus bovis ATCC 700338] gi|325179204|emb|CBZ49248.1| argG [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 416 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +V++A SGG+D+SV L +D YDV+ V + + G+D+ + + Sbjct: 25 KVILAYSGGLDTSVAITWLMKD-YDVVAVCMDV-------------GEGKDLDFIHDKAL 70 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 V YV D ++ F ++P ++A E P V +R V L+ + + GA Sbjct: 71 KVGAVESYVLDVKDEFAEEYVLPALQAHAYYEQKYPLVSALSRPVISKKLVEIAHKTGAT 130 Query: 140 VLATG 144 +A G Sbjct: 131 TIAHG 135 >gi|229076132|ref|ZP_04209100.1| Argininosuccinate synthase [Bacillus cereus Rock4-18] gi|229105258|ref|ZP_04235907.1| Argininosuccinate synthase [Bacillus cereus Rock3-28] gi|228678184|gb|EEL32412.1| Argininosuccinate synthase [Bacillus cereus Rock3-28] gi|228706995|gb|EEL59200.1| Argininosuccinate synthase [Bacillus cereus Rock4-18] Length = 411 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 15 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 61 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 62 SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121 Query: 140 VLATG 144 +A G Sbjct: 122 AVAHG 126 >gi|229141366|ref|ZP_04269904.1| Argininosuccinate synthase [Bacillus cereus BDRD-ST26] gi|228642147|gb|EEK98440.1| Argininosuccinate synthase [Bacillus cereus BDRD-ST26] Length = 401 Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 5 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 52 SVGAIKSYMMDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111 Query: 140 VLATG 144 +A G Sbjct: 112 AVAHG 116 >gi|254831669|ref|ZP_05236324.1| argininosuccinate synthase [Listeria monocytogenes 10403S] gi|255027648|ref|ZP_05299634.1| argininosuccinate synthase [Listeria monocytogenes FSL J2-003] Length = 404 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 25/130 (19%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77 ++V+A SGG+D+SV L GY+VI +CC G+++ + Sbjct: 5 KIVLAYSGGLDTSVAIQWLVESGYEVI-----------------ACCLDVGEGKNLDFIK 47 Query: 78 RVCDTINVSH-YVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 T+ S Y D +E F A+I A +Y G+ PL +R + L+ V R Sbjct: 48 EKAITVGASESYTIDAKEEFAEDFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEVAR 106 Query: 135 QLGADVLATG 144 Q GA +A G Sbjct: 107 QEGASAIAHG 116 >gi|168487061|ref|ZP_02711569.1| argininosuccinate synthase [Streptococcus pneumoniae CDC1087-00] gi|183570007|gb|EDT90535.1| argininosuccinate synthase [Streptococcus pneumoniae CDC1087-00] Length = 398 Score = 43.1 bits (100), Expect = 0.080, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 21/150 (14%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +V++A SGG+D+SV LK+D YDV+ V + + G+D+ + + Sbjct: 5 KVILAYSGGLDTSVAITWLKKD-YDVVSVCMDV-------------GEGKDLDFIHDKAL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 V YV D ++ F ++ S+A E P V +R + L+ + Q+GA Sbjct: 51 KVGAVESYVIDVKDEFATDYVLVAHQSHAYYEQKYPLVSALSRPLISKKLVEIAHQIGAT 110 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDL 169 +A G + G+D R + +DL Sbjct: 111 TIAHGCTGK-----GNDQVRFEVSIAALDL 135 >gi|218899784|ref|YP_002448195.1| argininosuccinate synthase [Bacillus cereus G9842] gi|226729217|sp|B7IK29|ASSY_BACC2 RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|218542345|gb|ACK94739.1| argininosuccinate synthase [Bacillus cereus G9842] Length = 401 Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YDVI + L L G+D+ + + Sbjct: 5 KVVLAYSGGLDTSVAIKWLQEKNYDVIALCLDL-------------GEGKDLGFVKEKAL 51 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 52 SVGAIKSYMVDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111 Query: 140 VLATG 144 +A G Sbjct: 112 AVAHG 116 >gi|169833085|ref|YP_001693635.1| argininosuccinate synthase [Streptococcus pneumoniae Hungary19A-6] gi|229889897|sp|B1I814|ASSY_STRPI RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|168995587|gb|ACA36199.1| argininosuccinate synthase [Streptococcus pneumoniae Hungary19A-6] Length = 398 Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 21/150 (14%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +V++A SGG+D+SV LK+D YDV+ V + + G+D+ + + Sbjct: 5 KVILAYSGGLDTSVAITWLKKD-YDVVSVCMDV-------------GEGKDLDFIHDKAL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 V YV D ++ F ++ S+A E P V +R + L+ + Q+GA Sbjct: 51 KVGAVESYVIDVKDEFATDYVLVAHQSHAYYEQKYPLVSALSRPLISKKLVEIAHQIGAT 110 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDL 169 +A G + G+D R + +DL Sbjct: 111 TIAHGCTGK-----GNDQVRFEVSIAALDL 135 >gi|16804129|ref|NP_465614.1| argininosuccinate synthase [Listeria monocytogenes EGD-e] gi|224501112|ref|ZP_03669419.1| argininosuccinate synthase [Listeria monocytogenes FSL R2-561] gi|254827022|ref|ZP_05231709.1| argininosuccinate synthase [Listeria monocytogenes FSL N3-165] gi|21263427|sp|Q8Y5H2|ASSY_LISMO RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|16411560|emb|CAD00168.1| argG [Listeria monocytogenes EGD-e] gi|258599404|gb|EEW12729.1| argininosuccinate synthase [Listeria monocytogenes FSL N3-165] Length = 404 Score = 43.1 bits (100), Expect = 0.082, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 25/130 (19%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77 ++V+A SGG+D+SV L GY+VI +CC G+++ + Sbjct: 5 KIVLAYSGGLDTSVAIQWLVESGYEVI-----------------ACCLDVGEGKNLDFIK 47 Query: 78 RVCDTINVSH-YVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 T+ S Y D +E F A+I A +Y G+ PL +R + L+ V R Sbjct: 48 EKAITVGASESYTIDAKEEFAEDFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEVAR 106 Query: 135 QLGADVLATG 144 Q GA +A G Sbjct: 107 QEGASAIAHG 116 >gi|324328524|gb|ADY23784.1| argininosuccinate synthase [Bacillus thuringiensis serovar finitimus YBT-020] Length = 401 Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 5 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 52 SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111 Query: 140 VLATG 144 +A G Sbjct: 112 AVAHG 116 >gi|229032281|ref|ZP_04188254.1| Argininosuccinate synthase [Bacillus cereus AH1271] gi|228729061|gb|EEL80064.1| Argininosuccinate synthase [Bacillus cereus AH1271] Length = 401 Score = 43.1 bits (100), Expect = 0.083, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 5 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 52 SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111 Query: 140 VLATG 144 +A G Sbjct: 112 AVAHG 116 >gi|217962117|ref|YP_002340687.1| argininosuccinate synthase [Bacillus cereus AH187] gi|226729215|sp|B7HRS7|ASSY_BACC7 RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|217066572|gb|ACJ80822.1| argininosuccinate synthase [Bacillus cereus AH187] Length = 401 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 5 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 52 SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111 Query: 140 VLATG 144 +A G Sbjct: 112 AVAHG 116 >gi|116873527|ref|YP_850308.1| argininosuccinate synthase [Listeria welshimeri serovar 6b str. SLCC5334] gi|123466515|sp|A0AKJ7|ASSY_LISW6 RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|116742405|emb|CAK21529.1| argininosuccinate synthase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 404 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 25/130 (19%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77 ++V+A SGG+D+SV L GY+VI +CC G+++ + Sbjct: 5 KIVLAYSGGLDTSVAIQWLVESGYEVI-----------------ACCLDVGEGKNLDFIK 47 Query: 78 RVCDTINVSH-YVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 T+ S Y D +E F A+I A +Y G+ PL +R + L+ V R Sbjct: 48 EKAITVGASESYTIDAKEEFAEDFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEVAR 106 Query: 135 QLGADVLATG 144 Q GA +A G Sbjct: 107 QEGASAIAHG 116 >gi|224418410|ref|ZP_03656416.1| tRNA methyltransferase [Helicobacter canadensis MIT 98-5491] gi|253827728|ref|ZP_04870613.1| tRNA methyltransferase [Helicobacter canadensis MIT 98-5491] gi|313141940|ref|ZP_07804133.1| tRNA methyltransferase [Helicobacter canadensis MIT 98-5491] gi|253511134|gb|EES89793.1| tRNA methyltransferase [Helicobacter canadensis MIT 98-5491] gi|313130971|gb|EFR48588.1| tRNA methyltransferase [Helicobacter canadensis MIT 98-5491] Length = 325 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 13/130 (10%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+ + SGG+DS + ++K G +V+ + + K K + + + Sbjct: 1 MKALALFSGGLDSLLAIKIIKDMGIEVLALHFDIGFIGKNDKSEA----------LKAIL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 I+V V D + +F N V+ F Y G+ PC+DC+ + FS S+ GA Sbjct: 51 SQIDVPLKVVDIKRQFFNEVL--FEPKYGYGKYFNPCIDCHGNM-FSHAFSMLESEGASF 107 Query: 141 LATGHYIRSR 150 + +G + R Sbjct: 108 VISGEVLGQR 117 >gi|47565044|ref|ZP_00236087.1| argininosuccinate synthase [Bacillus cereus G9241] gi|47557830|gb|EAL16155.1| argininosuccinate synthase [Bacillus cereus G9241] Length = 401 Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 5 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 52 SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111 Query: 140 VLATG 144 +A G Sbjct: 112 AVAHG 116 >gi|229175341|ref|ZP_04302856.1| Argininosuccinate synthase [Bacillus cereus MM3] gi|228608173|gb|EEK65480.1| Argininosuccinate synthase [Bacillus cereus MM3] Length = 411 Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 15 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 61 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 62 SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121 Query: 140 VLATG 144 +A G Sbjct: 122 AVAHG 126 >gi|222098103|ref|YP_002532160.1| argininosuccinate synthase [Bacillus cereus Q1] gi|301056138|ref|YP_003794349.1| argininosuccinate synthase [Bacillus anthracis CI] gi|254807507|sp|B9J0E1|ASSY_BACCQ RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|221242161|gb|ACM14871.1| argininosuccinate synthase [Bacillus cereus Q1] gi|300378307|gb|ADK07211.1| argininosuccinate synthase [Bacillus cereus biovar anthracis str. CI] Length = 401 Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 5 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 52 SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111 Query: 140 VLATG 144 +A G Sbjct: 112 AVAHG 116 >gi|306832311|ref|ZP_07465465.1| argininosuccinate synthase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425750|gb|EFM28868.1| argininosuccinate synthase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 416 Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +V++A SGG+D+SV L +D YDV+ V + + G+D+ + + Sbjct: 25 KVILAYSGGLDTSVAITWLMKD-YDVVAVCMDV-------------GEGKDLDFIHDKAL 70 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 V YV D ++ F ++P ++A E P V +R V L+ + + GA Sbjct: 71 KVGAVESYVLDVKDEFAEEYVLPALQAHAYYEQKYPLVSALSRPVISKKLVEIAHKTGAT 130 Query: 140 VLATG 144 +A G Sbjct: 131 TIAHG 135 >gi|228910456|ref|ZP_04074271.1| Argininosuccinate synthase [Bacillus thuringiensis IBL 200] gi|228849222|gb|EEM94061.1| Argininosuccinate synthase [Bacillus thuringiensis IBL 200] Length = 411 Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YDVI + L L G+D+ + + Sbjct: 15 KVVLAYSGGLDTSVAIKWLQEKNYDVIALCLDL-------------GEGKDLGFVKEKAL 61 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 62 SVGAIKSYMVDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121 Query: 140 VLATG 144 +A G Sbjct: 122 AVAHG 126 >gi|228987879|ref|ZP_04147988.1| Argininosuccinate synthase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228771927|gb|EEM20384.1| Argininosuccinate synthase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 411 Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 15 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 61 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 62 SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121 Query: 140 VLATG 144 +A G Sbjct: 122 AVAHG 126 >gi|229087189|ref|ZP_04219338.1| Argininosuccinate synthase [Bacillus cereus Rock3-44] gi|228696161|gb|EEL48997.1| Argininosuccinate synthase [Bacillus cereus Rock3-44] Length = 401 Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV+A SGG+D+SV L+ YDVI + L L G+D+ + Sbjct: 5 KVVLAYSGGLDTSVAIKWLQEKNYDVIALCLDL-------------GEGKDLAFVKEKAI 51 Query: 82 TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 ++ V Y+ D +E F N + + E P V +R + L+ V Q GA Sbjct: 52 SVGAVKSYMIDVQEEFANEYALMALQGHTLYEGKYPLVSALSRPLIAKKLVEVAEQEGAT 111 Query: 140 VLATG 144 +A G Sbjct: 112 AVAHG 116 >gi|196032963|ref|ZP_03100376.1| argininosuccinate synthase [Bacillus cereus W] gi|196040846|ref|ZP_03108144.1| argininosuccinate synthase [Bacillus cereus NVH0597-99] gi|206977157|ref|ZP_03238056.1| argininosuccinate synthase [Bacillus cereus H3081.97] gi|218905860|ref|YP_002453694.1| argininosuccinate synthase [Bacillus cereus AH820] gi|228948359|ref|ZP_04110642.1| Argininosuccinate synthase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|226729218|sp|B7JS06|ASSY_BACC0 RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|195994392|gb|EDX58347.1| argininosuccinate synthase [Bacillus cereus W] gi|196028300|gb|EDX66909.1| argininosuccinate synthase [Bacillus cereus NVH0597-99] gi|206744642|gb|EDZ56050.1| argininosuccinate synthase [Bacillus cereus H3081.97] gi|218539076|gb|ACK91474.1| argininosuccinate synthase [Bacillus cereus AH820] gi|228811346|gb|EEM57684.1| Argininosuccinate synthase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 401 Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 5 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 52 SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111 Query: 140 VLATG 144 +A G Sbjct: 112 AVAHG 116 >gi|49481365|ref|YP_038679.1| argininosuccinate synthase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|68566243|sp|Q6HCP7|ASSY_BACHK RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|49332921|gb|AAT63567.1| argininosuccinate synthase (citrulline-asparate ligase) [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 401 Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 5 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 52 SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111 Query: 140 VLATG 144 +A G Sbjct: 112 AVAHG 116 >gi|42783811|ref|NP_981058.1| argininosuccinate synthase [Bacillus cereus ATCC 10987] gi|47605388|sp|P61520|ASSY_BACC1 RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|42739741|gb|AAS43666.1| argininosuccinate synthase [Bacillus cereus ATCC 10987] Length = 401 Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 5 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 52 SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111 Query: 140 VLATG 144 +A G Sbjct: 112 AVAHG 116 >gi|47095799|ref|ZP_00233404.1| argininosuccinate synthase [Listeria monocytogenes str. 1/2a F6854] gi|254899212|ref|ZP_05259136.1| argininosuccinate synthase [Listeria monocytogenes J0161] gi|254912647|ref|ZP_05262659.1| argininosuccinate synthase [Listeria monocytogenes J2818] gi|254936974|ref|ZP_05268671.1| argininosuccinate synthase [Listeria monocytogenes F6900] gi|284802536|ref|YP_003414401.1| argininosuccinate synthase [Listeria monocytogenes 08-5578] gi|284995678|ref|YP_003417446.1| argininosuccinate synthase [Listeria monocytogenes 08-5923] gi|47015803|gb|EAL06731.1| argininosuccinate synthase [Listeria monocytogenes str. 1/2a F6854] gi|258609577|gb|EEW22185.1| argininosuccinate synthase [Listeria monocytogenes F6900] gi|284058098|gb|ADB69039.1| argininosuccinate synthase [Listeria monocytogenes 08-5578] gi|284061145|gb|ADB72084.1| argininosuccinate synthase [Listeria monocytogenes 08-5923] gi|293590642|gb|EFF98976.1| argininosuccinate synthase [Listeria monocytogenes J2818] Length = 404 Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 25/130 (19%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77 ++V+A SGG+D+SV L GY+VI +CC G+++ + Sbjct: 5 KIVLAYSGGLDTSVAIQWLVESGYEVI-----------------ACCLDVGEGKNLDFIK 47 Query: 78 RVCDTINVSH-YVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 T+ S Y D +E F A+I A +Y G+ PL +R + L+ V R Sbjct: 48 EKAITVGASESYTIDAKEEFAEDFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEVAR 106 Query: 135 QLGADVLATG 144 Q GA +A G Sbjct: 107 QEGASAIAHG 116 >gi|229158237|ref|ZP_04286304.1| Argininosuccinate synthase [Bacillus cereus ATCC 4342] gi|228625195|gb|EEK81955.1| Argininosuccinate synthase [Bacillus cereus ATCC 4342] Length = 411 Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 15 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 61 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 62 SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121 Query: 140 VLATG 144 +A G Sbjct: 122 AVAHG 126 >gi|163942362|ref|YP_001647246.1| argininosuccinate synthase [Bacillus weihenstephanensis KBAB4] gi|229889861|sp|A9VKE1|ASSY_BACWK RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|163864559|gb|ABY45618.1| Argininosuccinate synthase [Bacillus weihenstephanensis KBAB4] Length = 401 Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 17/126 (13%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 5 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51 Query: 81 DTINVSHYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + Y+ D +E + N A+I A + G+ PL +R + L+ + Q GA Sbjct: 52 SVGAIKSYMIDVQEEYANEYALIAMQAHTLYEGKYPL-VSALSRPLIAKKLVEIAEQEGA 110 Query: 139 DVLATG 144 +A G Sbjct: 111 SAVAHG 116 >gi|56756513|gb|AAW26429.1| SJCHGC00881 protein [Schistosoma japonicum] Length = 259 Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust. Identities = 53/242 (21%), Positives = 97/242 (40%), Gaps = 54/242 (22%) Query: 190 FPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDI 245 FP+G + K V+ +A+++GL I + +S +CF+ + ++ + + GI + Sbjct: 2 FPVGHLLKTQVKQIAQDIGLSRIYSRRESMGMCFIGKRRFSEFIDNYLEPRPGICKDFG- 60 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHR 302 Q+L H G+ ++T+GQR + G P +V +D + + V SL + + Sbjct: 61 ---TDQVLEEHTGVHHFTLGQRVPMKRFSG-PYYVCKMDYHKQIIYVVRDPTHPSLFMRK 116 Query: 303 IYLREINWLGDGLFEDAVVDGFKC-----FVKIRSSQDP--------------VPVFVQR 343 + W+ F + + + +R S P V + + Sbjct: 117 CWSGPAVWINSKPFSSINLKNIQFQWQNKWRPVRCSLKPFNEISLAAAYVKKDVKRCLSK 176 Query: 344 NDDGVYVDF------EKSEVG-------------VASGQACVFYTSDSNEARVLGGGIIS 384 +D+ V+ + E+G +A GQ C FY D N LGG +I Sbjct: 177 SDNAALVNTIDASIEDNREIGPCLSIELEVPMRCLAPGQWCAFY--DGNVC--LGGAMIC 232 Query: 385 GS 386 GS Sbjct: 233 GS 234 >gi|30264704|ref|NP_847081.1| argininosuccinate synthase [Bacillus anthracis str. Ames] gi|47530173|ref|YP_021522.1| argininosuccinate synthase [Bacillus anthracis str. 'Ames Ancestor'] gi|49187522|ref|YP_030775.1| argininosuccinate synthase [Bacillus anthracis str. Sterne] gi|165869602|ref|ZP_02214260.1| argininosuccinate synthase [Bacillus anthracis str. A0488] gi|167634048|ref|ZP_02392371.1| argininosuccinate synthase [Bacillus anthracis str. A0442] gi|167638113|ref|ZP_02396391.1| argininosuccinate synthase [Bacillus anthracis str. A0193] gi|170685699|ref|ZP_02876922.1| argininosuccinate synthase [Bacillus anthracis str. A0465] gi|170705390|ref|ZP_02895854.1| argininosuccinate synthase [Bacillus anthracis str. A0389] gi|177651161|ref|ZP_02933992.1| argininosuccinate synthase [Bacillus anthracis str. A0174] gi|190569076|ref|ZP_03021976.1| argininosuccinate synthase [Bacillus anthracis Tsiankovskii-I] gi|227817420|ref|YP_002817429.1| argininosuccinate synthase [Bacillus anthracis str. CDC 684] gi|229601082|ref|YP_002868913.1| argininosuccinate synthase [Bacillus anthracis str. A0248] gi|254687441|ref|ZP_05151297.1| argininosuccinate synthase [Bacillus anthracis str. CNEVA-9066] gi|254725004|ref|ZP_05186787.1| argininosuccinate synthase [Bacillus anthracis str. A1055] gi|254736741|ref|ZP_05194447.1| argininosuccinate synthase [Bacillus anthracis str. Western North America USA6153] gi|254741778|ref|ZP_05199465.1| argininosuccinate synthase [Bacillus anthracis str. Kruger B] gi|254754624|ref|ZP_05206659.1| argininosuccinate synthase [Bacillus anthracis str. Vollum] gi|254757456|ref|ZP_05209483.1| argininosuccinate synthase [Bacillus anthracis str. Australia 94] gi|33300934|sp|Q81KV7|ASSY_BACAN RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|254807504|sp|C3PB97|ASSY_BACAA RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|254807505|sp|C3L9T6|ASSY_BACAC RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|30259379|gb|AAP28567.1| argininosuccinate synthase [Bacillus anthracis str. Ames] gi|47505321|gb|AAT33997.1| argininosuccinate synthase [Bacillus anthracis str. 'Ames Ancestor'] gi|49181449|gb|AAT56825.1| argininosuccinate synthase [Bacillus anthracis str. Sterne] gi|164714431|gb|EDR19950.1| argininosuccinate synthase [Bacillus anthracis str. A0488] gi|167513930|gb|EDR89298.1| argininosuccinate synthase [Bacillus anthracis str. A0193] gi|167530849|gb|EDR93551.1| argininosuccinate synthase [Bacillus anthracis str. A0442] gi|170129515|gb|EDS98378.1| argininosuccinate synthase [Bacillus anthracis str. A0389] gi|170670163|gb|EDT20903.1| argininosuccinate synthase [Bacillus anthracis str. A0465] gi|172082987|gb|EDT68049.1| argininosuccinate synthase [Bacillus anthracis str. A0174] gi|190559858|gb|EDV13843.1| argininosuccinate synthase [Bacillus anthracis Tsiankovskii-I] gi|227002602|gb|ACP12345.1| argininosuccinate synthase [Bacillus anthracis str. CDC 684] gi|229265490|gb|ACQ47127.1| argininosuccinate synthase [Bacillus anthracis str. A0248] Length = 401 Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 5 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 52 SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111 Query: 140 VLATG 144 +A G Sbjct: 112 AVAHG 116 >gi|46908325|ref|YP_014714.1| argininosuccinate synthase [Listeria monocytogenes str. 4b F2365] gi|47091758|ref|ZP_00229553.1| argininosuccinate synthase [Listeria monocytogenes str. 4b H7858] gi|217963752|ref|YP_002349430.1| argininosuccinate synthase [Listeria monocytogenes HCC23] gi|224498464|ref|ZP_03666813.1| argininosuccinate synthase [Listeria monocytogenes Finland 1988] gi|226224696|ref|YP_002758803.1| argininosuccinate synthase [Listeria monocytogenes Clip81459] gi|254826266|ref|ZP_05231267.1| argininosuccinate synthase [Listeria monocytogenes FSL J1-194] gi|254854078|ref|ZP_05243426.1| argininosuccinate synthase [Listeria monocytogenes FSL R2-503] gi|254931801|ref|ZP_05265160.1| argininosuccinate synthase [Listeria monocytogenes HPB2262] gi|255520760|ref|ZP_05387997.1| argininosuccinate synthase [Listeria monocytogenes FSL J1-175] gi|290892237|ref|ZP_06555233.1| argininosuccinate synthase [Listeria monocytogenes FSL J2-071] gi|300765563|ref|ZP_07075543.1| argininosuccinate synthase [Listeria monocytogenes FSL N1-017] gi|68566245|sp|Q71XS4|ASSY_LISMF RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|254807527|sp|B8DH28|ASSY_LISMH RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|259585362|sp|C1KX43|ASSY_LISMC RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|46881596|gb|AAT04891.1| argininosuccinate synthase [Listeria monocytogenes serotype 4b str. F2365] gi|47019769|gb|EAL10507.1| argininosuccinate synthase [Listeria monocytogenes str. 4b H7858] gi|217333022|gb|ACK38816.1| argininosuccinate synthase [Listeria monocytogenes HCC23] gi|225877158|emb|CAS05871.1| Putative argininosuccinate synthase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258607472|gb|EEW20080.1| argininosuccinate synthase [Listeria monocytogenes FSL R2-503] gi|290558360|gb|EFD91878.1| argininosuccinate synthase [Listeria monocytogenes FSL J2-071] gi|293583355|gb|EFF95387.1| argininosuccinate synthase [Listeria monocytogenes HPB2262] gi|293595505|gb|EFG03266.1| argininosuccinate synthase [Listeria monocytogenes FSL J1-194] gi|300513765|gb|EFK40832.1| argininosuccinate synthase [Listeria monocytogenes FSL N1-017] gi|307571673|emb|CAR84852.1| argG [Listeria monocytogenes L99] gi|328465898|gb|EGF37079.1| argininosuccinate synthase [Listeria monocytogenes 1816] gi|328472470|gb|EGF43335.1| argininosuccinate synthase [Listeria monocytogenes 220] Length = 404 Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 25/130 (19%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77 ++V+A SGG+D+SV L GY+VI +CC G+++ + Sbjct: 5 KIVLAYSGGLDTSVAIQWLVESGYEVI-----------------ACCLDVGEGKNLDFIK 47 Query: 78 RVCDTINVSH-YVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 T+ S Y D +E F A+I A +Y G+ PL +R + L+ V R Sbjct: 48 EKAITVGASESYTIDAKEEFAEDFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEVAR 106 Query: 135 QLGADVLATG 144 Q GA +A G Sbjct: 107 QEGASAIAHG 116 >gi|331270460|ref|YP_004396952.1| hypothetical protein CbC4_2290 [Clostridium botulinum BKT015925] gi|329127010|gb|AEB76955.1| conserved hypothetical protein [Clostridium botulinum BKT015925] Length = 327 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 60/130 (46%), Gaps = 20/130 (15%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 + + +SGG+DS + A L+K G +VIG+ + Y G D +A+R+ Sbjct: 3 KALALISGGLDSILAAKLIKDQGIEVIGICFKSY------------FFGPD--NAKRMTK 48 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140 I++ V D+ + + P + G+ PC+DC+ ++++ L + AD Sbjct: 49 QIDIPLEVVDFSKEHFDMTKDP---KHGHGKNMNPCIDCHAMMMRYAGEL--LEKFNADF 103 Query: 141 LATGHYIRSR 150 + TG + R Sbjct: 104 IITGEVLNQR 113 >gi|228917274|ref|ZP_04080831.1| Argininosuccinate synthase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228935940|ref|ZP_04098750.1| Argininosuccinate synthase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228823708|gb|EEM69530.1| Argininosuccinate synthase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228842475|gb|EEM87566.1| Argininosuccinate synthase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 411 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 15 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 61 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 62 SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121 Query: 140 VLATG 144 +A G Sbjct: 122 AVAHG 126 >gi|229093727|ref|ZP_04224826.1| Argininosuccinate synthase [Bacillus cereus Rock3-42] gi|228689612|gb|EEL43420.1| Argininosuccinate synthase [Bacillus cereus Rock3-42] Length = 401 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 5 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 52 SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111 Query: 140 VLATG 144 +A G Sbjct: 112 AVAHG 116 >gi|228954898|ref|ZP_04116918.1| Argininosuccinate synthase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960898|ref|ZP_04122531.1| Argininosuccinate synthase [Bacillus thuringiensis serovar pakistani str. T13001] gi|229048336|ref|ZP_04193904.1| Argininosuccinate synthase [Bacillus cereus AH676] gi|229072132|ref|ZP_04205341.1| Argininosuccinate synthase [Bacillus cereus F65185] gi|229129913|ref|ZP_04258879.1| Argininosuccinate synthase [Bacillus cereus BDRD-Cer4] gi|229147190|ref|ZP_04275548.1| Argininosuccinate synthase [Bacillus cereus BDRD-ST24] gi|229192833|ref|ZP_04319791.1| Argininosuccinate synthase [Bacillus cereus ATCC 10876] gi|228590672|gb|EEK48533.1| Argininosuccinate synthase [Bacillus cereus ATCC 10876] gi|228636300|gb|EEK92772.1| Argininosuccinate synthase [Bacillus cereus BDRD-ST24] gi|228653604|gb|EEL09476.1| Argininosuccinate synthase [Bacillus cereus BDRD-Cer4] gi|228711066|gb|EEL63032.1| Argininosuccinate synthase [Bacillus cereus F65185] gi|228723061|gb|EEL74438.1| Argininosuccinate synthase [Bacillus cereus AH676] gi|228798794|gb|EEM45774.1| Argininosuccinate synthase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804887|gb|EEM51486.1| Argininosuccinate synthase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 411 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 15 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 61 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 62 SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121 Query: 140 VLATG 144 +A G Sbjct: 122 AVAHG 126 >gi|118479773|ref|YP_896924.1| argininosuccinate synthase [Bacillus thuringiensis str. Al Hakam] gi|229186890|ref|ZP_04314045.1| Argininosuccinate synthase [Bacillus cereus BGSC 6E1] gi|118418998|gb|ABK87417.1| argininosuccinate synthase [Bacillus thuringiensis str. Al Hakam] gi|228596627|gb|EEK54292.1| Argininosuccinate synthase [Bacillus cereus BGSC 6E1] Length = 411 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 15 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 61 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 62 SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121 Query: 140 VLATG 144 +A G Sbjct: 122 AVAHG 126 >gi|52140876|ref|YP_085953.1| argininosuccinate synthase [Bacillus cereus E33L] gi|196043913|ref|ZP_03111150.1| argininosuccinate synthase [Bacillus cereus 03BB108] gi|225866612|ref|YP_002751990.1| argininosuccinate synthase [Bacillus cereus 03BB102] gi|68566239|sp|Q633G4|ASSY_BACCZ RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|172044116|sp|A0RJM4|ASSY_BACAH RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|254807506|sp|C1EUX9|ASSY_BACC3 RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|51974345|gb|AAU15895.1| argininosuccinate synthase (citrulline-asparate ligase) [Bacillus cereus E33L] gi|196025249|gb|EDX63919.1| argininosuccinate synthase [Bacillus cereus 03BB108] gi|225789329|gb|ACO29546.1| argininosuccinate synthase [Bacillus cereus 03BB102] Length = 401 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 5 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 52 SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111 Query: 140 VLATG 144 +A G Sbjct: 112 AVAHG 116 >gi|114566689|ref|YP_753843.1| hypothetical protein Swol_1163 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337624|gb|ABI68472.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 328 Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust. Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 15/101 (14%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+ V SGG+DS + AAL+K+ G VIGV ++S + + A +++ V Sbjct: 1 MKAVCLFSGGLDSQLAAALVKKQGVTVIGVN---FSSPFFGANRATHMAAKELGIQLFVL 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 DT Y+ EE +N V Y G+ PC+DC+ Sbjct: 58 DT--GKEYI---EEVLKNPV-------YGYGKNFNPCIDCH 86 >gi|315283144|ref|ZP_07871401.1| argininosuccinate synthase [Listeria marthii FSL S4-120] gi|313613211|gb|EFR87098.1| argininosuccinate synthase [Listeria marthii FSL S4-120] Length = 404 Score = 42.7 bits (99), Expect = 0.090, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 25/130 (19%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77 ++V+A SGG+D+SV L GY+VI +CC G+++ + Sbjct: 5 KIVLAYSGGLDTSVAIQWLVESGYEVI-----------------ACCLDVGEGKNLDFIK 47 Query: 78 RVCDTINVSH-YVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 T+ S Y D +E F A+I A +Y G+ PL +R + L+ V R Sbjct: 48 EKAITVGASESYTIDAKEEFAEDFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEVAR 106 Query: 135 QLGADVLATG 144 Q GA +A G Sbjct: 107 QEGASAIAHG 116 >gi|75759980|ref|ZP_00740048.1| Argininosuccinate synthase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903149|ref|ZP_04067283.1| Argininosuccinate synthase [Bacillus thuringiensis IBL 4222] gi|74492538|gb|EAO55686.1| Argininosuccinate synthase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228856431|gb|EEN00957.1| Argininosuccinate synthase [Bacillus thuringiensis IBL 4222] Length = 411 Score = 42.7 bits (99), Expect = 0.090, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YDVI + L L G+D+ + + Sbjct: 15 KVVLAYSGGLDTSVAIKWLQEKNYDVIALCLDL-------------GEGKDLGFVKEKAL 61 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 62 SVGAIKSYMVDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121 Query: 140 VLATG 144 +A G Sbjct: 122 AVAHG 126 >gi|228929683|ref|ZP_04092701.1| Argininosuccinate synthase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229124200|ref|ZP_04253392.1| Argininosuccinate synthase [Bacillus cereus 95/8201] gi|228659502|gb|EEL15150.1| Argininosuccinate synthase [Bacillus cereus 95/8201] gi|228830070|gb|EEM75689.1| Argininosuccinate synthase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 411 Score = 42.7 bits (99), Expect = 0.091, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 15 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 61 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 62 SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121 Query: 140 VLATG 144 +A G Sbjct: 122 AVAHG 126 >gi|229163623|ref|ZP_04291572.1| Argininosuccinate synthase [Bacillus cereus R309803] gi|228619873|gb|EEK76750.1| Argininosuccinate synthase [Bacillus cereus R309803] Length = 401 Score = 42.7 bits (99), Expect = 0.091, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 5 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 52 SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111 Query: 140 VLATG 144 +A G Sbjct: 112 AVAHG 116 >gi|288906265|ref|YP_003431487.1| argininosuccinate synthase [Streptococcus gallolyticus UCN34] gi|288732991|emb|CBI14572.1| argininosuccinate synthase [Streptococcus gallolyticus UCN34] Length = 396 Score = 42.7 bits (99), Expect = 0.093, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +V++A SGG+D+SV L +D YDV+ V + + G+D+ + + Sbjct: 5 KVILAYSGGLDTSVAITWLMKD-YDVVAVCMDV-------------GEGKDLDFIHDKAL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 V YV D ++ F ++P ++A E P V +R V L+ + + GA Sbjct: 51 KVGAVESYVLDVKDEFAEEYVLPALQAHAYYEQKYPLVSALSRPVISKKLVEIAHKTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|229062317|ref|ZP_04199637.1| Argininosuccinate synthase [Bacillus cereus AH603] gi|228716980|gb|EEL68662.1| Argininosuccinate synthase [Bacillus cereus AH603] Length = 411 Score = 42.7 bits (99), Expect = 0.093, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 17/126 (13%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 15 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 61 Query: 81 DTINVSHYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + Y+ D +E + N A+I A + G+ PL +R + L+ + Q GA Sbjct: 62 SVGAIKSYMIDVQEEYANEYALIAMQAHTLYEGKYPLVSA-LSRPLIAKKLVEIAEQEGA 120 Query: 139 DVLATG 144 +A G Sbjct: 121 SAVAHG 126 >gi|229169357|ref|ZP_04297067.1| Argininosuccinate synthase [Bacillus cereus AH621] gi|228614120|gb|EEK71235.1| Argininosuccinate synthase [Bacillus cereus AH621] Length = 411 Score = 42.7 bits (99), Expect = 0.094, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 17/126 (13%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 15 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 61 Query: 81 DTINVSHYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + Y+ D +E + N A+I A + G+ PL +R + L+ + Q GA Sbjct: 62 SVGAIKSYMIDVQEEYANEYALIAMQAHTLYEGKYPLVSA-LSRPLIAKKLVEIAEQEGA 120 Query: 139 DVLATG 144 +A G Sbjct: 121 SAVAHG 126 >gi|30022705|ref|NP_834336.1| argininosuccinate synthase [Bacillus cereus ATCC 14579] gi|206969614|ref|ZP_03230568.1| argininosuccinate synthase [Bacillus cereus AH1134] gi|218234148|ref|YP_002369424.1| argininosuccinate synthase [Bacillus cereus B4264] gi|229112095|ref|ZP_04241638.1| Argininosuccinate synthase [Bacillus cereus Rock1-15] gi|229152824|ref|ZP_04281007.1| Argininosuccinate synthase [Bacillus cereus m1550] gi|296505099|ref|YP_003666799.1| argininosuccinate synthase [Bacillus thuringiensis BMB171] gi|33300931|sp|Q817C6|ASSY_BACCR RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|226729216|sp|B7H6Y5|ASSY_BACC4 RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|29898264|gb|AAP11537.1| Argininosuccinate synthase [Bacillus cereus ATCC 14579] gi|206735302|gb|EDZ52470.1| argininosuccinate synthase [Bacillus cereus AH1134] gi|218162105|gb|ACK62097.1| argininosuccinate synthase [Bacillus cereus B4264] gi|228630644|gb|EEK87290.1| Argininosuccinate synthase [Bacillus cereus m1550] gi|228671418|gb|EEL26719.1| Argininosuccinate synthase [Bacillus cereus Rock1-15] gi|296326151|gb|ADH09079.1| argininosuccinate synthase [Bacillus thuringiensis BMB171] Length = 401 Score = 42.7 bits (99), Expect = 0.094, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 5 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 51 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 52 SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111 Query: 140 VLATG 144 +A G Sbjct: 112 AVAHG 116 >gi|315427301|dbj|BAJ48912.1| transcription regulator ExsB related protein [Candidatus Caldiarchaeum subterraneum] gi|315428195|dbj|BAJ49779.1| transcription regulator ExsB related protein [Candidatus Caldiarchaeum subterraneum] Length = 216 Score = 42.7 bits (99), Expect = 0.096, Method: Compositional matrix adjust. Identities = 45/213 (21%), Positives = 86/213 (40%), Gaps = 28/213 (13%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSR--KASKRKGSCCAGQD--VY 74 M++V +SGG+DS+V+ L+ +G+ ++ +TL + N R +A+K+ +G++ VY Sbjct: 1 MKIVALVSGGIDSTVMLWKLRSEGHSILPLTLLTFRRNPREIEAAKKISKAASGREPIVY 60 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 D ++ ++DY + + V F S P + + +S V Sbjct: 61 D-------VSFLRELYDYPQHIKERVFQQFPS------LPNIVIPYRNIIFYSVAAYVAC 107 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 A+ +A GH + D G+ + D L +T + P+ Sbjct: 108 HEAAEAIAGGHTREDMERIPDVGE---------EFFADLEKILNKSTPFHRVKILTPVAG 158 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGK 227 + K + L E+G I + + GK Sbjct: 159 LWKPEIMRLGVELGAPIGETWSCWSVFEKHCGK 191 >gi|229135467|ref|ZP_04264254.1| Argininosuccinate synthase [Bacillus cereus BDRD-ST196] gi|228648028|gb|EEL04076.1| Argininosuccinate synthase [Bacillus cereus BDRD-ST196] Length = 411 Score = 42.7 bits (99), Expect = 0.099, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 17/126 (13%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 15 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 61 Query: 81 DTINVSHYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + Y+ D +E + N A+I A + G+ PL +R + L+ + Q GA Sbjct: 62 SVGAIKSYMIDVQEEYANEYALIAMQAHTLYEGKYPL-VSALSRPLIAKKLVEIAEQEGA 120 Query: 139 DVLATG 144 +A G Sbjct: 121 SAVAHG 126 >gi|149007912|ref|ZP_01831490.1| argininosuccinate synthase [Streptococcus pneumoniae SP18-BS74] gi|149026542|ref|ZP_01836599.1| argininosuccinate synthase [Streptococcus pneumoniae SP23-BS72] gi|168483583|ref|ZP_02708535.1| argininosuccinate synthase (Citrulline--aspartateligase) [Streptococcus pneumoniae CDC1873-00] gi|307126334|ref|YP_003878365.1| argininosuccinate synthase [Streptococcus pneumoniae 670-6B] gi|147760535|gb|EDK67510.1| argininosuccinate synthase [Streptococcus pneumoniae SP18-BS74] gi|147929229|gb|EDK80232.1| argininosuccinate synthase [Streptococcus pneumoniae SP23-BS72] gi|172042913|gb|EDT50959.1| argininosuccinate synthase (Citrulline--aspartateligase) [Streptococcus pneumoniae CDC1873-00] gi|306483396|gb|ADM90265.1| argininosuccinate synthase [Streptococcus pneumoniae 670-6B] Length = 139 Score = 42.7 bits (99), Expect = 0.100, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +V++A SGG+D+SV LK+D YDV+ V + + G+D+ + + Sbjct: 5 KVILAYSGGLDTSVAITWLKKD-YDVVSVCMDV-------------GEGKDLDFIHDKAL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 V YV D ++ F ++ S+A E P V +R + L+ + Q+GA Sbjct: 51 KVGAVESYVIDVKDEFATDYVLVAHQSHAYYEQKYPLVSALSRPLISKKLVEIAHQIGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|229013835|ref|ZP_04170963.1| Argininosuccinate synthase [Bacillus mycoides DSM 2048] gi|228747504|gb|EEL97379.1| Argininosuccinate synthase [Bacillus mycoides DSM 2048] Length = 411 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 17/126 (13%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 15 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 61 Query: 81 DTINVSHYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + Y+ D +E + N A+I A + G+ PL +R + L+ + Q GA Sbjct: 62 SVGAIKSYMIDVQEEYANEYALIAMQAHTLYEGKYPL-VSALSRPLIAKKLVEIAEQEGA 120 Query: 139 DVLATG 144 +A G Sbjct: 121 SAVAHG 126 >gi|167462072|ref|ZP_02327161.1| argininosuccinate synthase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383016|ref|ZP_08056846.1| argininosuccinate synthase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153039|gb|EFX45499.1| argininosuccinate synthase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 408 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 59/126 (46%), Gaps = 16/126 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRV 79 ++++A SGG+D+SV L+ + GYDV+ V + + G+D+ + + Sbjct: 5 KIILAYSGGLDTSVAIKWLQDNYGYDVVAVAIDV-------------GEGKDLDFVKAKA 51 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138 V YV D +ERF + ++P + A E P V +R + L+ + + GA Sbjct: 52 LQVGAVESYVVDAKERFADEFVLPVIKANAMYENKYPLVSALSRPLISRVLVEMAEKTGA 111 Query: 139 DVLATG 144 +A G Sbjct: 112 TAIAHG 117 >gi|171779008|ref|ZP_02920016.1| hypothetical protein STRINF_00891 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282366|gb|EDT47791.1| hypothetical protein STRINF_00891 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 396 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +V++A SGG+D+SV L +D YDV+ V + + G+D+ + + Sbjct: 5 KVILAYSGGLDTSVAITWLMKD-YDVLAVCMDV-------------GEGKDLDFIHDKAL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 V YV D ++ F ++P ++A E P V +R V L+ + + GA Sbjct: 51 KVGAVESYVLDVKDEFAEEYVLPALQAHAYYEQKYPLVSALSRPVISKKLVEIAHKTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|256810146|ref|YP_003127515.1| exsB protein [Methanocaldococcus fervens AG86] gi|256793346|gb|ACV24015.1| exsB protein [Methanocaldococcus fervens AG86] Length = 232 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 16/98 (16%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+ V +SGG+DS+V + K GY++ +T +KA KR ++ ++++C Sbjct: 1 MKAVTVLSGGLDSTVSTLIAKNLGYEITAITFNY--GQKAVKR--------EINASKKIC 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118 + ++++H V D I F S E +P + Sbjct: 51 EILDINHIVVDL------PFIKQFKKSSLITENEIPSL 82 >gi|303254795|ref|ZP_07340895.1| argininosuccinate synthase, truncation [Streptococcus pneumoniae BS455] gi|303259155|ref|ZP_07345133.1| argininosuccinate synthase [Streptococcus pneumoniae SP-BS293] gi|303260912|ref|ZP_07346861.1| argininosuccinate synthase [Streptococcus pneumoniae SP14-BS292] gi|303263239|ref|ZP_07349162.1| argininosuccinate synthase [Streptococcus pneumoniae BS397] gi|303267651|ref|ZP_07353487.1| argininosuccinate synthase [Streptococcus pneumoniae BS457] gi|303269997|ref|ZP_07355728.1| argininosuccinate synthase [Streptococcus pneumoniae BS458] gi|301801070|emb|CBW33737.1| putative argininosuccinate synthase (fragment) [Streptococcus pneumoniae INV200] gi|302598232|gb|EFL65278.1| argininosuccinate synthase, truncation [Streptococcus pneumoniae BS455] gi|302637749|gb|EFL68235.1| argininosuccinate synthase [Streptococcus pneumoniae SP14-BS292] gi|302639573|gb|EFL70030.1| argininosuccinate synthase [Streptococcus pneumoniae SP-BS293] gi|302640473|gb|EFL70889.1| argininosuccinate synthase [Streptococcus pneumoniae BS458] gi|302642820|gb|EFL73131.1| argininosuccinate synthase [Streptococcus pneumoniae BS457] gi|302647012|gb|EFL77236.1| argininosuccinate synthase [Streptococcus pneumoniae BS397] gi|332077416|gb|EGI87877.1| arginosuccinate synthase family protein [Streptococcus pneumoniae GA41301] Length = 139 Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 58/125 (46%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +V++A SGG+D+SV LK+D YDV+ V + + G+D+ + + Sbjct: 5 KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLDFIHDKAL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 V YV D ++ F ++ S+A E P V +R + L+ + Q+GA Sbjct: 51 KVGAVESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEIAHQIGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|254457550|ref|ZP_05070978.1| thiamine biosynthesis protein:ExsB [Campylobacterales bacterium GD 1] gi|207086342|gb|EDZ63626.1| thiamine biosynthesis protein:ExsB [Campylobacterales bacterium GD 1] Length = 325 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 29/130 (22%), Positives = 53/130 (40%), Gaps = 13/130 (10%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+ + SGG+DS++ L+ G DV+ V + G + + +C Sbjct: 1 MKAIALFSGGLDSTLAMKLIIDQGIDVLAVNIS----------TGFGSTKDRLEHMQNMC 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + D + F V+ F + G+ PC+DC+ + F+ + GA Sbjct: 51 DQVGAELKIIDIQSEFLQDVL--FDPKHGYGKNFNPCIDCHAKM-FAVAKRIMEAEGASF 107 Query: 141 LATGHYIRSR 150 L +G + R Sbjct: 108 LVSGEVMGQR 117 >gi|326942415|gb|AEA18311.1| argininosuccinate synthase [Bacillus thuringiensis serovar chinensis CT-43] Length = 401 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 5 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLGFVKEKAL 51 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 52 SVGAIKSYMVDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 111 Query: 140 VLATG 144 +A G Sbjct: 112 AVAHG 116 >gi|284163626|ref|YP_003401905.1| argininosuccinate synthase [Haloterrigena turkmenica DSM 5511] gi|284013281|gb|ADB59232.1| argininosuccinate synthase [Haloterrigena turkmenica DSM 5511] Length = 429 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 20/152 (13%) Query: 21 MRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RV +A SGG+D++V LL+ + GYD VIGVT+ + + AS+ + +A Sbjct: 2 TRVALAFSGGLDTTVCVPLLEEEYGYDDVIGVTVDV--GQPASEFE----------EAEE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + HYV D +E F + + ++ PL R V +L V + Sbjct: 50 TADALGLEHYVVDAKEEFADLCLEGVRANATYQGYPLGTA-LARPVIAEAILEVAEE--Q 106 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170 D H + G+D R + R DLE Sbjct: 107 DCTGIAHGCTGK---GNDQLRFEAIWRDSDLE 135 >gi|229817944|ref|ZP_04448226.1| hypothetical protein BIFANG_03231 [Bifidobacterium angulatum DSM 20098] gi|229784548|gb|EEP20662.1| hypothetical protein BIFANG_03231 [Bifidobacterium angulatum DSM 20098] Length = 412 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 58/135 (42%), Gaps = 23/135 (17%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTL---QLYNSRKASKRKGSCCAG 70 DKN R+V+A SGG+D+SV + LK R G DV+ V+L Q S + K + C Sbjct: 3 DKN----RLVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKERALACGA 58 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDL 129 V YV D + F N + + A E P V +R + L Sbjct: 59 --------------VEAYVVDARDEFANEYCMKALKANAMYEGVYPLVSAISRPLISKHL 104 Query: 130 LSVTRQLGADVLATG 144 + Q GAD ++ G Sbjct: 105 VRAAHQFGADTISHG 119 >gi|119025937|ref|YP_909782.1| argininosuccinate synthase [Bifidobacterium adolescentis ATCC 15703] gi|171473028|sp|A1A1W7|ASSY_BIFAA RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|118765521|dbj|BAF39700.1| argininosuccinate synthase [Bifidobacterium adolescentis ATCC 15703] Length = 418 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 19/128 (14%) Query: 22 RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTL---QLYNSRKASKRKGSCCAGQDVYDAR 77 R+V+A SGG+D+SV + LK R G DV+ V+L Q S + K++ C Sbjct: 12 RLVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKQRALACGA------- 64 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136 V YV D + F N + + A E P V +R + L+ Q Sbjct: 65 -------VEAYVVDARDEFANEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAHQF 117 Query: 137 GADVLATG 144 GAD ++ G Sbjct: 118 GADTISHG 125 >gi|57641627|ref|YP_184105.1| ATPase [Thermococcus kodakarensis KOD1] gi|57159951|dbj|BAD85881.1| predicted ATPase, PP-loop superfamily [Thermococcus kodakarensis KOD1] Length = 246 Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust. Identities = 19/47 (40%), Positives = 30/47 (63%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54 RL+ D D++P +V VA SGG DS+ +L+ G+D I +T++L Sbjct: 44 RLSGKDFDRSPTGAKVAVAFSGGSDSTATLKVLRWAGFDAIPITVKL 90 >gi|228993360|ref|ZP_04153276.1| Argininosuccinate synthase [Bacillus pseudomycoides DSM 12442] gi|228766428|gb|EEM15071.1| Argininosuccinate synthase [Bacillus pseudomycoides DSM 12442] Length = 403 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 7 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLEFVKEKAL 53 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + + E P V +R + L+ + Q GA Sbjct: 54 SVGAIKSYMIDVQEEFANEYALMALQGHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAS 113 Query: 140 VLATG 144 +A G Sbjct: 114 AVAHG 118 >gi|16801260|ref|NP_471528.1| argininosuccinate synthase [Listeria innocua Clip11262] gi|21263434|sp|Q929S9|ASSY_LISIN RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|16414708|emb|CAC97424.1| argG [Listeria innocua Clip11262] Length = 404 Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 25/130 (19%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77 ++V+A SGG+D+SV L GY+VI +CC G+++ + Sbjct: 5 KIVLAYSGGLDTSVAIQWLVESGYEVI-----------------ACCLDVGEGKNLDFIK 47 Query: 78 RVCDTINVS-HYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 T+ S Y D +E F A+I A +Y G+ PL +R + L+ V R Sbjct: 48 EKAITVGASASYTIDAKEEFAENFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEVAR 106 Query: 135 QLGADVLATG 144 Q GA +A G Sbjct: 107 QEGASAIAHG 116 >gi|228941810|ref|ZP_04104357.1| Argininosuccinate synthase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228974735|ref|ZP_04135301.1| Argininosuccinate synthase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981330|ref|ZP_04141630.1| Argininosuccinate synthase [Bacillus thuringiensis Bt407] gi|228778530|gb|EEM26797.1| Argininosuccinate synthase [Bacillus thuringiensis Bt407] gi|228785138|gb|EEM33151.1| Argininosuccinate synthase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228818022|gb|EEM64100.1| Argininosuccinate synthase [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 411 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 15 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLGFVKEKAL 61 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 62 SVGAIKSYMVDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121 Query: 140 VLATG 144 +A G Sbjct: 122 AVAHG 126 >gi|227497662|ref|ZP_03927876.1| argininosuccinate synthase [Actinomyces urogenitalis DSM 15434] gi|226832892|gb|EEH65275.1| argininosuccinate synthase [Actinomyces urogenitalis DSM 15434] Length = 407 Score = 42.4 bits (98), Expect = 0.12, Method: Compositional matrix adjust. Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 15/126 (11%) Query: 22 RVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79 RVV+A SGG+D+SV + ++ G +VI V + + G+D+ R R Sbjct: 7 RVVLAYSGGLDTSVAIGWIGEQTGREVITVAVDVGQ------------GGEDLEVIRQRA 54 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138 D V YV D + F N +P + A E P V +R V L+ RQ GA Sbjct: 55 LDCGAVEAYVADARDEFANEYCMPALKANALYEGKYPLVSAISRPVIAKHLVKAARQFGA 114 Query: 139 DVLATG 144 +A G Sbjct: 115 STVAHG 120 >gi|241895795|ref|ZP_04783091.1| argininosuccinate synthase [Weissella paramesenteroides ATCC 33313] gi|241870838|gb|EER74589.1| argininosuccinate synthase [Weissella paramesenteroides ATCC 33313] Length = 407 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 17/126 (13%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDARRV 79 +VV+A SGG+D+SV A LK GYDVI + + + K KG Sbjct: 5 KVVLAYSGGLDTSVEIAWLKNAGYDVIACCIDVGEEKDLVKIQEKGKQVGA--------- 55 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138 + V D ++ F ++ ++A E P + +R + L+ V +Q GA Sbjct: 56 -----IESVVIDAQQEFAEEYVLVALQAHAYYEGKYPLISALSRPLIAKKLVEVAKQYGA 110 Query: 139 DVLATG 144 +A G Sbjct: 111 TAIAHG 116 >gi|229019857|ref|ZP_04176658.1| Argininosuccinate synthase [Bacillus cereus AH1273] gi|229026084|ref|ZP_04182465.1| Argininosuccinate synthase [Bacillus cereus AH1272] gi|228735237|gb|EEL85851.1| Argininosuccinate synthase [Bacillus cereus AH1272] gi|228741464|gb|EEL91663.1| Argininosuccinate synthase [Bacillus cereus AH1273] Length = 411 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 15 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 61 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 62 SVGAIKSYMVDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121 Query: 140 VLATG 144 +A G Sbjct: 122 AVAHG 126 >gi|225850620|ref|YP_002730854.1| thiamine biosynthesis protein [Persephonella marina EX-H1] gi|225645577|gb|ACO03763.1| thiamine biosynthesis protein [Persephonella marina EX-H1] Length = 352 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 33/135 (24%), Positives = 53/135 (39%), Gaps = 7/135 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVY--D 75 K + V SGG+DS++ L++ G DV V + + +R+G Y Sbjct: 6 KGKKAVALYSGGLDSTLAIKLIQNQGIDVTAVHFYTGFCITETKRRRGEKKEDGSHYMNP 65 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A + + D + + N V P Y G PC+DC R + + Sbjct: 66 ALKYAAKYGFKLEIVDISDEYFNIVTNP---KYGYGSNINPCIDC-RAFMYKKAREIMED 121 Query: 136 LGADVLATGHYIRSR 150 +GAD L +G + R Sbjct: 122 IGADFLVSGEVLNQR 136 >gi|154488644|ref|ZP_02029493.1| hypothetical protein BIFADO_01951 [Bifidobacterium adolescentis L2-32] gi|212715749|ref|ZP_03323877.1| hypothetical protein BIFCAT_00649 [Bifidobacterium catenulatum DSM 16992] gi|225352198|ref|ZP_03743221.1| hypothetical protein BIFPSEUDO_03814 [Bifidobacterium pseudocatenulatum DSM 20438] gi|154082781|gb|EDN81826.1| hypothetical protein BIFADO_01951 [Bifidobacterium adolescentis L2-32] gi|212661116|gb|EEB21691.1| hypothetical protein BIFCAT_00649 [Bifidobacterium catenulatum DSM 16992] gi|225157445|gb|EEG70784.1| hypothetical protein BIFPSEUDO_03814 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 418 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 19/128 (14%) Query: 22 RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTL---QLYNSRKASKRKGSCCAGQDVYDAR 77 R+V+A SGG+D+SV + LK R G DV+ V+L Q S + K++ C Sbjct: 12 RLVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKQRALACGA------- 64 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136 V YV D + F N + + A E P V +R + L+ Q Sbjct: 65 -------VEAYVVDARDEFANEYCMKALKANALYEGVYPLVSAISRPLISKHLVRAAHQF 117 Query: 137 GADVLATG 144 GAD ++ G Sbjct: 118 GADTISHG 125 >gi|313681210|ref|YP_004058948.1| queuosine synthesis [Sulfuricurvum kujiense DSM 16994] gi|313154070|gb|ADR32748.1| Queuosine synthesis [Sulfuricurvum kujiense DSM 16994] Length = 323 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 13/130 (10%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+ + SGG+DS++ A L+ G +VI + G + + +C Sbjct: 1 MKAIALFSGGLDSTLAAKLIIDQGIEVIACNIN----------TGFGSTKDRLAHMKNMC 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + I D + + V+ F Y G+ PC+DC+ + F V + GA Sbjct: 51 EQIGAEFRSVDIRDEYIREVL--FTPKYGYGKNFNPCIDCHAKM-FEVAKRVMEEWGASF 107 Query: 141 LATGHYIRSR 150 L +G + R Sbjct: 108 LISGEVLGQR 117 >gi|320547573|ref|ZP_08041858.1| argininosuccinate synthase [Streptococcus equinus ATCC 9812] gi|320447648|gb|EFW88406.1| argininosuccinate synthase [Streptococcus equinus ATCC 9812] Length = 396 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +V++A SGG+D+SV L +D YDV+ V + + G+D+ + + Sbjct: 5 KVILAYSGGLDTSVAITWLMKD-YDVVAVCVDV-------------GEGKDLDFIHDKAL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 V YV D ++ F ++P ++A E P V +R V L+ + + GA Sbjct: 51 KVGAVESYVLDVKDEFAEEYVLPALQAHAYYEQKYPLVSALSRPVISKKLVEIAHKTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|228999413|ref|ZP_04158992.1| Argininosuccinate synthase [Bacillus mycoides Rock3-17] gi|229006968|ref|ZP_04164597.1| Argininosuccinate synthase [Bacillus mycoides Rock1-4] gi|228754286|gb|EEM03702.1| Argininosuccinate synthase [Bacillus mycoides Rock1-4] gi|228760358|gb|EEM09325.1| Argininosuccinate synthase [Bacillus mycoides Rock3-17] Length = 403 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 7 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLEFVKEKAL 53 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + + E P V +R + L+ + Q GA Sbjct: 54 SVGAIKSYMIDVQEEFANEYALMALQGHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAS 113 Query: 140 VLATG 144 +A G Sbjct: 114 AVAHG 118 >gi|295399520|ref|ZP_06809502.1| argininosuccinate synthase [Geobacillus thermoglucosidasius C56-YS93] gi|294978986|gb|EFG54582.1| argininosuccinate synthase [Geobacillus thermoglucosidasius C56-YS93] Length = 402 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 18/130 (13%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YD 75 NPK +V+A SGG+D+SV L+ GYDVI L L G+D+ + Sbjct: 3 NPK---IVLAYSGGLDTSVAIKWLQERGYDVIACCLDL-------------GEGKDLDFV 46 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTR 134 + + YV D +E F N + ++A E P V +R + L+ + Sbjct: 47 KEKALKVGAIKSYVIDVKEEFANEYALIALQAHALYEGKYPLVSALSRPLISKKLVEIAE 106 Query: 135 QLGADVLATG 144 GA +A G Sbjct: 107 LEGAVAVAHG 116 >gi|91772881|ref|YP_565573.1| argininosuccinate synthase [Methanococcoides burtonii DSM 6242] gi|119361289|sp|Q12XK3|ASSY_METBU RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|91711896|gb|ABE51823.1| Argininosuccinate synthase [Methanococcoides burtonii DSM 6242] Length = 394 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 14/125 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +V +A SGG+D+S+ LLK + GYD VI V + + + +DV A Sbjct: 4 KVALAYSGGLDTSICIPLLKEEYGYDEVITVAVDVGQPK------------EDVAQAEEK 51 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 I+ H+ D E F N I P + E + R + ++ + Q GA Sbjct: 52 AKKISDKHFTLDVREEFVNDYIFPLIRANGDYEGYVMGTSIARPLIAKKVVEIAEQEGAV 111 Query: 140 VLATG 144 LA G Sbjct: 112 ALAHG 116 >gi|312109922|ref|YP_003988238.1| argininosuccinate synthase [Geobacillus sp. Y4.1MC1] gi|311215023|gb|ADP73627.1| argininosuccinate synthase [Geobacillus sp. Y4.1MC1] Length = 402 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 18/130 (13%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YD 75 NPK +V+A SGG+D+SV L+ GYDVI L L G+D+ + Sbjct: 3 NPK---IVLAYSGGLDTSVAIKWLQERGYDVIACCLDL-------------GEGKDLDFV 46 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTR 134 + + YV D +E F N + ++A E P V +R + L+ + Sbjct: 47 KEKALKVGAIKSYVIDVKEEFANEYALIALQAHALYEGKYPLVSALSRPLISKKLVEIAE 106 Query: 135 QLGADVLATG 144 GA +A G Sbjct: 107 LEGAVAVAHG 116 >gi|228923378|ref|ZP_04086666.1| Argininosuccinate synthase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228836332|gb|EEM81685.1| Argininosuccinate synthase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 411 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 15 KVVLAYSGGLDTSVAIKWLQEKDYDIIALCLDL-------------GEGKDLAFVKEKAL 61 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 62 SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121 Query: 140 VLATG 144 +A G Sbjct: 122 AVAHG 126 >gi|11498169|ref|NP_069395.1| hypothetical protein AF0559 [Archaeoglobus fulgidus DSM 4304] gi|2650065|gb|AAB90680.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 265 Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust. Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 22/122 (18%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VV+A SGGVDSS +AA+ K G DV+ VT+ S+K+ R ++ DA ++ Sbjct: 22 VVIAFSGGVDSSTLAAVCKDAGLDVLAVTVV---SQKSPSR--------EIKDAAKIAME 70 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I V H + + ++ P T C C + V S L+S+ + G D + Sbjct: 71 IGVKHEFVNMD------ILTPEFRE----NTSERCYFCKKKV-LSSLVSLAEERGYDAVF 119 Query: 143 TG 144 G Sbjct: 120 EG 121 >gi|319651841|ref|ZP_08005966.1| argininosuccinate synthase [Bacillus sp. 2_A_57_CT2] gi|317396493|gb|EFV77206.1| argininosuccinate synthase [Bacillus sp. 2_A_57_CT2] Length = 402 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 23/129 (17%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77 +VV+A SGG+D+SV L+ GY V+ +CC G+D+ + Sbjct: 5 KVVLAYSGGLDTSVAVKWLQDQGYAVV-----------------ACCLDVGEGKDLNFIQ 47 Query: 78 RVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQ 135 + T+ V YV D +E F N + ++A E P V +R + L+ V + Sbjct: 48 KKALTVGAVQSYVIDAKEEFANEYALIALQAHALYENKYPLVSALSRPLIAKKLVEVAEK 107 Query: 136 LGADVLATG 144 GA +A G Sbjct: 108 EGAVAVAHG 116 >gi|126461244|ref|YP_001042358.1| NAD+ synthetase [Rhodobacter sphaeroides ATCC 17029] gi|126102908|gb|ABN75586.1| NAD+ synthetase [Rhodobacter sphaeroides ATCC 17029] Length = 514 Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 27/47 (57%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69 V+ MSGGVDS++ AAL K G+ V+G TL + + R CA Sbjct: 75 AVIGMSGGVDSALTAALFKAAGWHVVGHTLPIEQDPNETDRGIEACA 121 >gi|299821493|ref|ZP_07053381.1| argininosuccinate synthase [Listeria grayi DSM 20601] gi|299817158|gb|EFI84394.1| argininosuccinate synthase [Listeria grayi DSM 20601] Length = 404 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 57/130 (43%), Gaps = 25/130 (19%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77 ++V+A SGG+D+SV L GYDVI +CC G+++ + Sbjct: 5 KIVLAYSGGLDTSVAIQWLLESGYDVI-----------------ACCLDVGEGKNLDFVK 47 Query: 78 RVCDTINVS-HYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 T+ S Y D +E F A+I A +Y G+ PL +R + L+ V R Sbjct: 48 EKALTVGASASYTIDAKEEFAKDFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEVAR 106 Query: 135 QLGADVLATG 144 GA +A G Sbjct: 107 TEGASAIAHG 116 >gi|221638227|ref|YP_002524489.1| NH(3)-dependent NAD(+) synthetase [Rhodobacter sphaeroides KD131] gi|221159008|gb|ACL99987.1| NH(3)-dependent NAD(+) synthetase [Rhodobacter sphaeroides KD131] Length = 514 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 27/47 (57%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69 V+ MSGGVDS++ AAL K G+ V+G TL + + R CA Sbjct: 75 AVIGMSGGVDSALTAALFKAAGWHVVGHTLPIEQDPTETDRGIEACA 121 >gi|118445022|ref|YP_879024.1| hypothetical protein NT01CX_0558 [Clostridium novyi NT] gi|118135478|gb|ABK62522.1| conserved protein [Clostridium novyi NT] Length = 327 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 20/130 (15%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 + + +SGG+DS + A L+K G +VIG+ + Y G + +A+R+ Sbjct: 3 KALALISGGLDSILAAKLIKDQGIEVIGICFKSY------------FFGPE--NAKRMTK 48 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140 I++ V D+ + + P + G+ PC+DC+ ++++ L + AD Sbjct: 49 QIDIPLEVVDFSKEHFDMTKSP---KHGHGKNMNPCIDCHAMMMRYAGEL--LEKFNADF 103 Query: 141 LATGHYIRSR 150 + TG + R Sbjct: 104 IITGEVLNQR 113 >gi|322378093|ref|ZP_08052579.1| argininosuccinate synthase [Streptococcus sp. M334] gi|321280930|gb|EFX57944.1| argininosuccinate synthase [Streptococcus sp. M334] Length = 398 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +V++A SGG+D+SV LK+D YDV+ V + + G+D+ + + Sbjct: 5 KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLDFIHDKAL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 V YV D ++ F ++ S+A E P V +R + L+ + Q GA Sbjct: 51 KVGAVESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|148994308|ref|ZP_01823572.1| argininosuccinate synthase [Streptococcus pneumoniae SP9-BS68] gi|168489416|ref|ZP_02713615.1| argininosuccinate synthase [Streptococcus pneumoniae SP195] gi|147927338|gb|EDK78370.1| argininosuccinate synthase [Streptococcus pneumoniae SP9-BS68] gi|183572053|gb|EDT92581.1| argininosuccinate synthase [Streptococcus pneumoniae SP195] gi|332075781|gb|EGI86248.1| argininosuccinate synthase [Streptococcus pneumoniae GA17570] Length = 398 Score = 42.0 bits (97), Expect = 0.16, Method: Compositional matrix adjust. Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 21/150 (14%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +V++A SGG+D+SV LK+D YDV+ V + + G+D+ + + Sbjct: 5 KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLDFIHDKAL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 V YV D ++ F ++ S+A E P V +R + L+ + Q GA Sbjct: 51 KVGAVESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDL 169 +A G + G+D R + +DL Sbjct: 111 TIAHGCTGK-----GNDQVRFEVSIAALDL 135 >gi|270284207|ref|ZP_05965742.2| argininosuccinate synthase [Bifidobacterium gallicum DSM 20093] gi|270277327|gb|EFA23181.1| argininosuccinate synthase [Bifidobacterium gallicum DSM 20093] Length = 427 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 42/148 (28%), Positives = 61/148 (41%), Gaps = 23/148 (15%) Query: 2 VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLK-RDGYDVIGVTL---QLYNS 57 VV + ++ DKN R+V+A SGG+D+SV LK R G DV+ V+L Q S Sbjct: 5 VVEKGFPMSDTAQDKN----RIVLAYSGGLDTSVAIPYLKDRTGKDVVAVSLDVGQGGES 60 Query: 58 RKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117 + K + C V Y+ D + F + + A E P Sbjct: 61 LETIKERALACGA--------------VESYIVDARDEFAEEYCMMALKANAMYEDVYPL 106 Query: 118 VDC-NRTVKFSDLLSVTRQLGADVLATG 144 V +R + L+ Q GAD +A G Sbjct: 107 VSAISRPLITKHLVRAAHQFGADTIAHG 134 >gi|298675346|ref|YP_003727096.1| argininosuccinate synthase [Methanohalobium evestigatum Z-7303] gi|298288334|gb|ADI74300.1| argininosuccinate synthase [Methanohalobium evestigatum Z-7303] Length = 395 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 66/155 (42%), Gaps = 19/155 (12%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 P+ +VV+A SGG+D+SV LLK + GYD VI V + + +++ + Sbjct: 2 PEPKKVVLAYSGGLDTSVCIPLLKEEYGYDEVITVAVNVGQPE------------EEIKE 49 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A + I+ HY D + F N I P + E + R + ++ V + Sbjct: 50 ADEKAEKISDKHYTIDARKEFVNDYIFPLIKANGDYEGYVMGTSVARPLIAKKVVEVAEK 109 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170 A L+ G + G+D R + R DLE Sbjct: 110 EKASALSHGCTGK-----GNDQLRFEAVFRLTDLE 139 >gi|288573314|ref|ZP_06391671.1| argininosuccinate synthase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569055|gb|EFC90612.1| argininosuccinate synthase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 411 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 56/128 (43%), Gaps = 15/128 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +VV+A SGG+D+SV L GYDV+ +T + S ++K + Sbjct: 4 KKGKVVLAYSGGLDTSVAVCWLMERGYDVVTLTADVGQSVNLEEKKA------------K 51 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPF--ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 T V+ YV D +++F + P A+ G PL +R + L V + Sbjct: 52 SLQTGAVAAYVMDLKKQFVQEFVWPALKANGMYQGTYPLSSA-LSRPLISQQLAWVAKNE 110 Query: 137 GADVLATG 144 GA +A G Sbjct: 111 GAVAVAHG 118 >gi|268611361|ref|ZP_06145088.1| hypothetical protein RflaF_17909 [Ruminococcus flavefaciens FD-1] Length = 395 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 25/112 (22%), Positives = 49/112 (43%), Gaps = 19/112 (16%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72 ++ KN + RV++ +SGG DS LK+ G DV + C+ Sbjct: 14 EIIKNSPNPRVIMMLSGGKDSIAALCFLKKLGLDVTAIHFI-----------HKWCSDIP 62 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 +A+R+C +++ ++D+ F +++ S + G PC C + + Sbjct: 63 TNEAKRICQQLDIPLKIYDFTNEFYDSI-----SGFTDGR---PCALCKKNM 106 >gi|253680929|ref|ZP_04861732.1| argininosuccinate synthase [Clostridium botulinum D str. 1873] gi|253562778|gb|EES92224.1| argininosuccinate synthase [Clostridium botulinum D str. 1873] Length = 327 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 20/130 (15%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 + + +SGG+DS + A L+K G +VIG+ + Y G + +A+R+ Sbjct: 3 KALALISGGLDSILAAKLIKDQGIEVIGICFKSY------------FFGPE--NAKRMTK 48 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140 I++ V D+ + + P + G+ PC+DC+ ++++ L + AD Sbjct: 49 QIDIPLEVIDFSKEHFDMTKDP---KHGHGKNMNPCIDCHAMMMRYAGEL--LEKFNADF 103 Query: 141 LATGHYIRSR 150 + TG + R Sbjct: 104 IITGEVLNQR 113 >gi|260892095|ref|YP_003238192.1| PP-loop domain protein [Ammonifex degensii KC4] gi|260864236|gb|ACX51342.1| PP-loop domain protein [Ammonifex degensii KC4] Length = 307 Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust. Identities = 21/37 (56%), Positives = 26/37 (70%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54 P RVVVA+SGG DS V A +LKR GY+V+G + L Sbjct: 45 PPGARVVVALSGGKDSLVTAFVLKRLGYEVLGFFVDL 81 >gi|312869093|ref|ZP_07729267.1| argininosuccinate synthase [Lactobacillus oris PB013-T2-3] gi|311095339|gb|EFQ53609.1| argininosuccinate synthase [Lactobacillus oris PB013-T2-3] Length = 409 Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust. Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 21/128 (16%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQD--VYDAR 77 ++V+A SGG+D+SV A L GYDVI + + A + K + V DA+ Sbjct: 5 KIVLAYSGGLDTSVAIAWLMNKGYDVIACCIDVGEGLDLDAIQHKAAAIGAWKSVVIDAK 64 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136 R D+ E+F ++P +A E P V +R + L+ V ++ Sbjct: 65 R------------DFAEQF----VLPALQVHAMYEQKYPLVSALSRPLIVQKLVGVAKEY 108 Query: 137 GADVLATG 144 GA +A G Sbjct: 109 GATAIAHG 116 >gi|313622926|gb|EFR93229.1| argininosuccinate synthase [Listeria innocua FSL J1-023] Length = 404 Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust. Identities = 40/132 (30%), Positives = 59/132 (44%), Gaps = 29/132 (21%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV-- 79 ++V+A SGG+D+SV L GY+VI +CC DV + + + Sbjct: 5 KIVLAYSGGLDTSVAIQWLVESGYEVI-----------------ACCL--DVGEGKNLDF 45 Query: 80 --CDTINV---SHYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 INV + Y D +E F A+I A +Y G+ PL +R + L+ V Sbjct: 46 IKEKAINVGASASYTIDAKEEFAENFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEV 104 Query: 133 TRQLGADVLATG 144 RQ GA +A G Sbjct: 105 ARQEGASAIAHG 116 >gi|20094941|ref|NP_614788.1| ATPase [Methanopyrus kandleri AV19] gi|19888183|gb|AAM02718.1| Predicted ATPase of the PP-loop superfamily [Methanopyrus kandleri AV19] Length = 265 Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust. Identities = 18/37 (48%), Positives = 27/37 (72%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL 52 + P+DMR+ VA SGG DS+ A +L++ GY+V VT+ Sbjct: 62 EEPRDMRITVAASGGYDSTASAIILRKLGYEVESVTV 98 >gi|307710245|ref|ZP_07646688.1| argininosuccinate synthase [Streptococcus mitis SK564] gi|307619007|gb|EFN98140.1| argininosuccinate synthase [Streptococcus mitis SK564] Length = 398 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +V++A SGG+D+SV LK+D YDV+ V + + G+D+ + + Sbjct: 5 KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLDFIHDKAL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 V YV D ++ F ++ S+A E P V +R + L+ + Q GA Sbjct: 51 KVGAVESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|228967727|ref|ZP_04128744.1| Argininosuccinate synthase [Bacillus thuringiensis serovar sotto str. T04001] gi|228791949|gb|EEM39534.1| Argininosuccinate synthase [Bacillus thuringiensis serovar sotto str. T04001] Length = 411 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YDVI + L L G+D+ + + Sbjct: 15 KVVLAYSGGLDTSVAIKWLQEKNYDVIALCLDL-------------GEGKDLGFVKEKAL 61 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 62 SVGAIKSYMVDVQEGFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121 Query: 140 VLATG 144 +A G Sbjct: 122 AVAHG 126 >gi|269925445|ref|YP_003322068.1| argininosuccinate synthase [Thermobaculum terrenum ATCC BAA-798] gi|269789105|gb|ACZ41246.1| argininosuccinate synthase [Thermobaculum terrenum ATCC BAA-798] Length = 403 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 36/129 (27%), Positives = 57/129 (44%), Gaps = 16/129 (12%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 K +VV+A SGG+D+SV+ A +K + G +VI T G++V +A+ Sbjct: 3 KIKKVVLAYSGGLDTSVILAWIKENYGAEVIAFT-------------ADVGQGEEVEEAK 49 Query: 78 RVCDTINVSH-YVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSVTRQ 135 + S Y D E F + P + A E L R + +L+ + R+ Sbjct: 50 QKALATGASKAYALDLREEFVRDFVFPVIRAAAVYENQYLMGTSIARPLIARELVRIARE 109 Query: 136 LGADVLATG 144 GAD +A G Sbjct: 110 EGADAIAHG 118 >gi|229099090|ref|ZP_04230024.1| Argininosuccinate synthase [Bacillus cereus Rock3-29] gi|229118120|ref|ZP_04247479.1| Argininosuccinate synthase [Bacillus cereus Rock1-3] gi|228665343|gb|EEL20826.1| Argininosuccinate synthase [Bacillus cereus Rock1-3] gi|228684318|gb|EEL38262.1| Argininosuccinate synthase [Bacillus cereus Rock3-29] Length = 411 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + + Sbjct: 15 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAL 61 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + ++ E P V +R + L+ + Q GA Sbjct: 62 SVGAIKSYMIDVQEEFANEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAVQEGAT 121 Query: 140 VLATG 144 +A G Sbjct: 122 AVAHG 126 >gi|291456422|ref|ZP_06595812.1| argininosuccinate synthase [Bifidobacterium breve DSM 20213] gi|291381699|gb|EFE89217.1| argininosuccinate synthase [Bifidobacterium breve DSM 20213] Length = 412 Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 19/128 (14%) Query: 22 RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTL---QLYNSRKASKRKGSCCAGQDVYDAR 77 R+V+A SGG+D+SV + LK R G DV+ V+L Q S + K + C Sbjct: 6 RLVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKERALACGA------- 58 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136 + YV D + F N + + A E P V +R + L+ Q Sbjct: 59 -------IESYVVDARDEFANEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAHQF 111 Query: 137 GADVLATG 144 GAD ++ G Sbjct: 112 GADTISHG 119 >gi|260893667|ref|YP_003239764.1| argininosuccinate synthase [Ammonifex degensii KC4] gi|260865808|gb|ACX52914.1| argininosuccinate synthase [Ammonifex degensii KC4] Length = 399 Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 16/126 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79 +VV+A SGG+D+S++ LK + GY+VI +T+ L G+D+ R + Sbjct: 4 KVVLAYSGGLDTSIIIPWLKENYGYEVIALTVDL-------------GQGEDLAAIREKA 50 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSVTRQLGA 138 + YV D E F + P + A E L R + L+ V RQ GA Sbjct: 51 LRSGAAKAYVVDAREEFVREYVFPVLKAGAIYEGKYLLGTAMARPLIAKKLVEVARQEGA 110 Query: 139 DVLATG 144 + +A G Sbjct: 111 EAVAHG 116 >gi|302392994|ref|YP_003828814.1| NAD+ synthetase [Acetohalobium arabaticum DSM 5501] gi|302205071|gb|ADL13749.1| NAD+ synthetase [Acetohalobium arabaticum DSM 5501] Length = 259 Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 79/200 (39%), Gaps = 49/200 (24%) Query: 24 VVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++ +SGGVDSSVVA L+K G + +GV L S +D A+ V D Sbjct: 23 ILGLSGGVDSSVVAGLIKEAFGDNTLGVLLPTDGS-----------IDKDTEYAKLVADE 71 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 N+ V V Y E L D V+ +D +S Q D Sbjct: 72 FNLE------------TVTVNLGEVYDVFEGKLSEAD----VEEAD-VSHWPQTKLDASG 114 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ-------------QLCDLR 189 TG+ GD+ K R M L +Y + T+ + DLR Sbjct: 115 TGN------RAGDNMKPRLRMVSLHYLAEKMNYVVMGTSNKSEVITGYYTNNGDNATDLR 168 Query: 190 FPLGDMKKESVRDLAREMGL 209 PLGD+ K V +LARE+G+ Sbjct: 169 -PLGDLLKTEVWELAREVGV 187 >gi|224373210|ref|YP_002607582.1| thiamine biosynthesis protein:ExsB [Nautilia profundicola AmH] gi|223588685|gb|ACM92421.1| thiamine biosynthesis protein:ExsB [Nautilia profundicola AmH] Length = 319 Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust. Identities = 22/101 (21%), Positives = 46/101 (45%), Gaps = 12/101 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+ + SGG+DS++ L++ ++ GV + + G Q +++ Sbjct: 1 MKAIALFSGGLDSALAIKLIQEQNIEIEGVYIDV----------GFETNKQKTEHLQKLA 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 D + + V D +E++ ++ F Y G+ PC+DC+ Sbjct: 51 DELGIKLTVLDIKEQYIKEIL--FNPVYGYGKNMNPCIDCH 89 >gi|289168795|ref|YP_003447064.1| argininosuccinate synthase [Streptococcus mitis B6] gi|288908362|emb|CBJ23204.1| argininosuccinate synthase [Streptococcus mitis B6] Length = 398 Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +V++A SGG+D+SV LK+D YDV+ V + + G+D+ + + Sbjct: 5 KVILAYSGGLDTSVAITWLKKD-YDVVAVCMNV-------------GEGKDLDFIHDKAL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 V YV D ++ F ++ ++A E P V +R + L+ + Q GA Sbjct: 51 KVGAVESYVIDVQDEFATDYVLVALQAHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|325294366|ref|YP_004280880.1| hypothetical protein Dester_0164 [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064814|gb|ADY72821.1| protein of unknown function DUF814 [Desulfurobacterium thermolithotrophum DSM 11699] Length = 327 Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust. Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 29/134 (21%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V + SGG+DS + A LLK G++VIGV + S +++ D + + Sbjct: 5 KVYLLFSGGLDSIIAAKLLKDLGFEVIGVHIT------------SPFFQKNLEDLKNLAK 52 Query: 82 TINVSHYVF----DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + ++ DY E +N V Y G+ PC+DC + +L ++L Sbjct: 53 ELGINLEFIEAGDDYLEMLKNPV-------YGYGKNINPCIDCK-----AYMLRKIKELA 100 Query: 138 -ADVLATGHYIRSR 150 +++ATG + R Sbjct: 101 KGNIIATGEVLGQR 114 >gi|307705804|ref|ZP_07642647.1| argininosuccinate synthase [Streptococcus mitis SK597] gi|307620636|gb|EFN99729.1| argininosuccinate synthase [Streptococcus mitis SK597] Length = 398 Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +V++A SGG+D+SV LK+D YDV+ V + + G+D+ + + Sbjct: 5 KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLDFIHDKAL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 V Y+ D ++ F ++ S+A E P V +R + L+ + Q GA Sbjct: 51 KVGAVESYIIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|168185903|ref|ZP_02620538.1| thiamin biosynthesis protein ThiI [Clostridium botulinum C str. Eklund] gi|169296022|gb|EDS78155.1| thiamin biosynthesis protein ThiI [Clostridium botulinum C str. Eklund] Length = 327 Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust. Identities = 31/130 (23%), Positives = 59/130 (45%), Gaps = 20/130 (15%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 + + +SGG+DS + A L+K G +VIG+ + Y G + +A+R+ Sbjct: 3 KALALISGGLDSILAAKLIKDQGIEVIGICFKSY------------FFGPE--NAKRMTK 48 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RTVKFSDLLSVTRQLGADV 140 I++ V D+ + P + G+ PC+DC+ ++++ L + AD Sbjct: 49 QIDIPLEVVDFSREHFDMTKSP---KHGHGKNMNPCIDCHAMMMRYAGEL--LEKFNADF 103 Query: 141 LATGHYIRSR 150 + TG + R Sbjct: 104 IITGEVLNQR 113 >gi|77462367|ref|YP_351871.1| NH(3)-dependent NAD(+) synthetase [Rhodobacter sphaeroides 2.4.1] gi|77386785|gb|ABA77970.1| NH(3)-dependent NAD(+) synthetase [Rhodobacter sphaeroides 2.4.1] Length = 514 Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 27/47 (57%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69 V+ MSGGVDS++ AAL K G+ V+G TL + + R CA Sbjct: 75 AVIGMSGGVDSALTAALFKAAGWHVMGHTLPIEQDPTETDRGIEACA 121 >gi|170290101|ref|YP_001736917.1| ExsB family protein [Candidatus Korarchaeum cryptofilum OPF8] gi|170174181|gb|ACB07234.1| ExsB family protein [Candidatus Korarchaeum cryptofilum OPF8] Length = 260 Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust. Identities = 45/196 (22%), Positives = 79/196 (40%), Gaps = 50/196 (25%) Query: 23 VVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 V++A+SGG+DSS +AAL K+ G I VT+ AS+ + +++ ARRV + Sbjct: 16 VIIALSGGLDSSTLAALCKKLLGDKAIAVTV-------ASELQPE----EEIEGARRVAE 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + H + + V A P C C + + F + + +LG + Sbjct: 65 EIGIRHILIE----------VSLLKEEVARNGPDRCYHCKKAM-FRRIRELAEELGVREI 113 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM--KKES 199 G G R +R P ++ +KE Sbjct: 114 FDGTNASDSWRPGIGALRE-------------------------LGIRSPWAELGFRKEE 148 Query: 200 VRDLAREMGLDIADKS 215 +R++AR +GL +++K+ Sbjct: 149 IREIARNLGLSVSEKA 164 >gi|159905116|ref|YP_001548778.1| exsB protein [Methanococcus maripaludis C6] gi|254764359|sp|A9A873|QUEC_METM6 RecName: Full=7-cyano-7-deazaguanine synthase; AltName: Full=7-cyano-7-carbaguanine synthase; AltName: Full=Archaeosine biosynthesis protein queC; AltName: Full=PreQ(0) synthase gi|159886609|gb|ABX01546.1| exsB protein [Methanococcus maripaludis C6] Length = 233 Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust. Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 10/71 (14%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+ + +SGG+DS+V + + K + YD+ VT G Q++ A+++ Sbjct: 1 MKAICVLSGGLDSAVTSLVAKSENYDITTVTFNY----------GQMALNQEIKSAKKIS 50 Query: 81 DTINVSHYVFD 91 + +N ++V D Sbjct: 51 EILNADNHVID 61 >gi|148990571|ref|ZP_01821693.1| argininosuccinate synthase [Streptococcus pneumoniae SP6-BS73] gi|149010975|ref|ZP_01832280.1| argininosuccinate synthase [Streptococcus pneumoniae SP19-BS75] gi|225860148|ref|YP_002741657.1| argininosuccinate synthase (Citrulline--aspartateligase) [Streptococcus pneumoniae Taiwan19F-14] gi|298229082|ref|ZP_06962763.1| argininosuccinate synthase (Citrulline--aspartateligase) [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255703|ref|ZP_06979289.1| argininosuccinate synthase (Citrulline--aspartateligase) [Streptococcus pneumoniae str. Canada MDR_19A] gi|147764611|gb|EDK71541.1| argininosuccinate synthase [Streptococcus pneumoniae SP19-BS75] gi|147924188|gb|EDK75289.1| argininosuccinate synthase [Streptococcus pneumoniae SP6-BS73] gi|225727953|gb|ACO23804.1| argininosuccinate synthase (Citrulline--aspartateligase) [Streptococcus pneumoniae Taiwan19F-14] gi|327390521|gb|EGE88861.1| arginosuccinate synthase family protein [Streptococcus pneumoniae GA04375] Length = 139 Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +V++A SGG+D+SV LK+D YDV+ V + + G+D+ + + Sbjct: 5 KVILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLDFIHDKAL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 V YV D ++ F ++ S+A E P V +R + L+ + Q GA Sbjct: 51 KVGAVESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|313632417|gb|EFR99442.1| argininosuccinate synthase [Listeria seeligeri FSL N1-067] gi|313636935|gb|EFS02532.1| argininosuccinate synthase [Listeria seeligeri FSL S4-171] Length = 404 Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 25/130 (19%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77 ++V+A SGG+D+SV L GY++I +CC G+++ + Sbjct: 5 KIVLAYSGGLDTSVAIQWLAEAGYEII-----------------ACCLDVGEGKNLDFIK 47 Query: 78 RVCDTINVSH-YVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 T+ S Y D +E F A+I A +Y G+ PL +R + L+ V R Sbjct: 48 EKAITVGASQSYTIDAKEEFAEDFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEVAR 106 Query: 135 QLGADVLATG 144 + GA +A G Sbjct: 107 KEGASAIAHG 116 >gi|78777268|ref|YP_393583.1| ExsB [Sulfurimonas denitrificans DSM 1251] gi|110816276|sp|Q30RN3|QUEC_SULDN RecName: Full=7-cyano-7-deazaguanine synthase; AltName: Full=7-cyano-7-carbaguanine synthase; AltName: Full=PreQ(0) synthase; AltName: Full=Queuosine biosynthesis protein queC gi|78497808|gb|ABB44348.1| ExsB [Sulfurimonas denitrificans DSM 1251] Length = 224 Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust. Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 11/76 (14%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N K+ + + MSGG+DS++ A ++K GY+++ + Y R +K +++ Sbjct: 2 NLKNKKAICIMSGGMDSTLGAYMVKEMGYEIVALHFN-YAQRTEAK---------ELFCF 51 Query: 77 RRVCDTINVSH-YVFD 91 +++C+ +NVS+ YV D Sbjct: 52 KKICEALNVSNSYVLD 67 >gi|224283258|ref|ZP_03646580.1| argininosuccinate synthase [Bifidobacterium bifidum NCIMB 41171] gi|310287618|ref|YP_003938876.1| Argininosuccinate synthase [Bifidobacterium bifidum S17] gi|311064530|ref|YP_003971255.1| argininosuccinate synthase ArgG [Bifidobacterium bifidum PRL2010] gi|313140405|ref|ZP_07802598.1| argininosuccinate synthase [Bifidobacterium bifidum NCIMB 41171] gi|309251554|gb|ADO53302.1| Argininosuccinate synthase [Bifidobacterium bifidum S17] gi|310866849|gb|ADP36218.1| ArgG Argininosuccinate synthase [Bifidobacterium bifidum PRL2010] gi|313132915|gb|EFR50532.1| argininosuccinate synthase [Bifidobacterium bifidum NCIMB 41171] Length = 412 Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 53/128 (41%), Gaps = 19/128 (14%) Query: 22 RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTL---QLYNSRKASKRKGSCCAGQDVYDAR 77 R+V+A SGG+D+SV LK R G DV+ V+L Q S + K + C Sbjct: 6 RIVLAYSGGLDTSVAIPYLKDRTGKDVVAVSLDVGQGGESLETIKNRALACGA------- 58 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136 V YV D F N + + A E P V +R + L+ Q Sbjct: 59 -------VEAYVVDARNEFANEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAHQF 111 Query: 137 GADVLATG 144 GAD ++ G Sbjct: 112 GADTISHG 119 >gi|218461257|ref|ZP_03501348.1| putative cell cycle protein MesJ/cytosine deaminase-related protein [Rhizobium etli Kim 5] Length = 493 Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust. Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 42/230 (18%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-----RKGSCCAGQDVYDA 76 R++VA+SGG DS+ + LL + + L S A+ R GS Q V Sbjct: 24 RILVAISGGSDSTGLLLLLD----EAVKAAPHLKISLCAATVDHRLRAGSADEAQQVAA- 78 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV-DCNRTVKFSDLLSVTRQ 135 +C ++ + H + ++ G+ P V R ++ L + Sbjct: 79 --LCASLGIPHIIAAWQ-----------------GDKPKTGVMAAAREARYDLLAESAER 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGA+++ATGH + D +R + R M E+ S A + + PL Sbjct: 120 LGANLIATGHTL--------DDQRETLQMRGMRTEQVSSGIADAVLFNRRFWILRPLLFS 171 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 + +R RE G+ + ++D+ + + + +R++A A+E DI Sbjct: 172 SRADIRAFLRERGVPWIEDPSNEDVKY----ERVRIRRRLSADPAMETDI 217 >gi|305664217|ref|YP_003860505.1| PP-loop domain protein [Ignisphaera aggregans DSM 17230] gi|304378786|gb|ADM28625.1| PP-loop domain protein [Ignisphaera aggregans DSM 17230] Length = 298 Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 25/128 (19%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++VV SGGVDS+++A L YDV+G N+ A ++ DA ++ Sbjct: 34 KIVVMFSGGVDSTLLAKL----AYDVLG------NNAIAVTIDSPVIPRSEIRDAIQIAK 83 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL--SVTRQLGAD 139 I + H V + +E RN Y P C C KF D + + +++G D Sbjct: 84 LIGIRHEVIEIDE-LRN--------KYLVENPPDRCYLCR---KFRDAIVKNWAKRIGFD 131 Query: 140 VLATG-HY 146 V+A G HY Sbjct: 132 VVADGLHY 139 >gi|225855892|ref|YP_002737403.1| argininosuccinate synthase [Streptococcus pneumoniae P1031] gi|225725292|gb|ACO21144.1| argininosuccinate synthase [Streptococcus pneumoniae P1031] Length = 139 Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +V++A SGG+D+SV LK+D YDV+ V + + G+D+ + + Sbjct: 5 KVILAYSGGLDTSVAITWLKKD-YDVVSVCMDV-------------GEGKDLDFIHDKAL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 V YV D ++ F ++ S+A E P V +R + L+ + Q GA Sbjct: 51 KVGAVESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|296109747|ref|YP_003616696.1| NAD+ synthetase [Methanocaldococcus infernus ME] gi|295434561|gb|ADG13732.1| NAD+ synthetase [Methanocaldococcus infernus ME] Length = 247 Score = 41.2 bits (95), Expect = 0.28, Method: Compositional matrix adjust. Identities = 50/200 (25%), Positives = 84/200 (42%), Gaps = 46/200 (23%) Query: 23 VVVAMSGGVDSSVVAAL-LKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 VVV +SGG+DSS A L +K G D V+G+ L +RK +D+ DA++V Sbjct: 21 VVVGLSGGIDSSTTAFLCVKALGKDKVLGLILPEKTTRK-----------EDIEDAKKVA 69 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + + +Y+ D + V+ F E +P + V+ L + Sbjct: 70 EMLGIKYYIIDITD-----VLKAFGLYTPTKEFEKIPDGNLKARVRMCVLYYYANKYNYL 124 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 V T + +S +YVG K + C M P+ + K Sbjct: 125 VAGTAN--KSEIYVGYGTKYGDLACDFM-----------------------PIAHLFKTE 159 Query: 200 VRDLAREMGL--DIADKSDS 217 VR+LA+++G+ +I +K S Sbjct: 160 VRELAKKLGVPKEIIEKPPS 179 >gi|218674465|ref|ZP_03524134.1| argininosuccinate synthase [Rhizobium etli GR56] Length = 399 Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 16/126 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+A SGG+D+S++ L+ + G +V+ T L G+++ AR+ Sbjct: 1 KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 47 Query: 81 DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + Y+ D E F + P + AA E L R + L+ + R+ GA Sbjct: 48 EMLGIKEIYIEDVREEFVRDFVFPMFRANAAYEGVYLLGTSIARPLISKHLIDIARKTGA 107 Query: 139 DVLATG 144 D +A G Sbjct: 108 DAIAHG 113 >gi|212638331|ref|YP_002314851.1| argininosuccinate synthase [Anoxybacillus flavithermus WK1] gi|226729219|sp|B7GGR4|ASSY_ANOFW RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|212559811|gb|ACJ32866.1| Argininosuccinate synthase [Anoxybacillus flavithermus WK1] Length = 402 Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 57/134 (42%), Gaps = 26/134 (19%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQD 72 NPK VV+A SGG+D+SV L+ GYDV+ +CC G+D Sbjct: 3 NPK---VVLAYSGGLDTSVAIKWLQEQGYDVV-----------------ACCLDVGEGKD 42 Query: 73 V-YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLL 130 + + + V Y+ D +E F N + ++A E P + +R + L+ Sbjct: 43 LEFVKEKALKVGAVKSYMIDAKEEFANEYALIALQAHALYEGKYPLISALSRPLISKKLV 102 Query: 131 SVTRQLGADVLATG 144 + GA +A G Sbjct: 103 EIAELEGAVAVAHG 116 >gi|255321785|ref|ZP_05362940.1| thiamine biosynthesis protein:ExsB [Campylobacter showae RM3277] gi|255301265|gb|EET80527.1| thiamine biosynthesis protein:ExsB [Campylobacter showae RM3277] Length = 328 Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust. Identities = 55/256 (21%), Positives = 95/256 (37%), Gaps = 33/256 (12%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+ +V SGG+DS + LL G +V + + + S ++K RR Sbjct: 1 MKALVLFSGGLDSMISIKLLTTQGIEVTAIHIDIGFS--GDEKKAEIL--------RRRA 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + D + V+ F + G+ PC+DC+ + F L++ GA Sbjct: 51 NEAGAEFKIVDIRNEYLREVL--FTPKHGYGKHFNPCIDCHGYM-FKTALAMMSAEGASF 107 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP--------- 191 +ATG I R +RR M + + D+ + QL P Sbjct: 108 IATGEVIGQRPM----SQRRDAMAQVKNAAGDEEDLILRPMSAQLMKPTKPEHEGWVDRS 163 Query: 192 --LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 LG ++ R LA ++ C + + + +K I + D+ + Sbjct: 164 KLLGISGRDRKRQLALAKEFGFSEFETPGGGCLLTIESFSNKIKDF---IKFDPDMTSAD 220 Query: 250 GQIL--GRHNGIINYT 263 Q+L GRH + N T Sbjct: 221 MQLLRIGRHLRLANGT 236 >gi|315304193|ref|ZP_07874562.1| argininosuccinate synthase [Listeria ivanovii FSL F6-596] gi|313627428|gb|EFR96192.1| argininosuccinate synthase [Listeria ivanovii FSL F6-596] Length = 404 Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 25/130 (19%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77 ++V+A SGG+D+SV L GY+VI +CC G+++ + Sbjct: 5 KIVLAYSGGLDTSVAIQWLVEAGYEVI-----------------ACCLDVGEGKNLDFIK 47 Query: 78 RVCDTINVSH-YVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 T+ S Y D +E F A+I A +Y G+ PL +R + L+ V R Sbjct: 48 EKAITVGASQSYTIDAKEEFAEDFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEVAR 106 Query: 135 QLGADVLATG 144 + GA +A G Sbjct: 107 KEGASAIAHG 116 >gi|254479732|ref|ZP_05093019.1| PP-loop family protein [Carboxydibrachium pacificum DSM 12653] gi|214034329|gb|EEB75116.1| PP-loop family protein [Carboxydibrachium pacificum DSM 12653] Length = 310 Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust. Identities = 21/37 (56%), Positives = 26/37 (70%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54 P RVVVA+SGG DS V A +LKR GY+V+G + L Sbjct: 45 PPKGRVVVAISGGKDSLVTAYVLKRLGYEVLGFFVDL 81 >gi|268680598|ref|YP_003305029.1| thiamine biosynthesis protein:ExsB [Sulfurospirillum deleyianum DSM 6946] gi|268618629|gb|ACZ12994.1| thiamine biosynthesis protein:ExsB [Sulfurospirillum deleyianum DSM 6946] Length = 327 Score = 40.8 bits (94), Expect = 0.35, Method: Compositional matrix adjust. Identities = 36/139 (25%), Positives = 62/139 (44%), Gaps = 31/139 (22%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--------YNS-RKASKRKGSCCAGQ 71 M+ +V SGG+DS + +L + G +VI + + + Y + + +K G+C Sbjct: 1 MKALVLFSGGLDSMLAVNVLVQQGIEVIALHVNIGFGIKDDHYETLERRAKLAGACLEVI 60 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 DV D +Y ++ + F+ Y G+ PC+DC+ + FS S Sbjct: 61 DVRD---------------EYLQK------ILFSPKYGYGKQFNPCIDCHGFM-FSVAKS 98 Query: 132 VTRQLGADVLATGHYIRSR 150 + + GA +ATG I R Sbjct: 99 LLPRYGASFIATGEVIAQR 117 >gi|14590222|ref|NP_142287.1| hypothetical protein PH0300 [Pyrococcus horikoshii OT3] gi|3256690|dbj|BAA29373.1| 310aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 310 Score = 40.8 bits (94), Expect = 0.36, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 57/130 (43%), Gaps = 23/130 (17%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD R++VA+SGG DS+V A +LK+ GY++ + + L S + K + A++ Sbjct: 46 KDERILVAVSGGKDSAVTAYVLKKLGYNIECLHINLGISGYSEKSEEY---------AKK 96 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL---PCVDCNRTVKFSDLLSVTRQ 135 C I ++ +E Y GE PC C T ++ + Sbjct: 97 QCKLIGAPLHIVRIKEIL----------GYGIGEVKTRRPPCSYCGLTKRYI-MNKFAYD 145 Query: 136 LGADVLATGH 145 G D +ATGH Sbjct: 146 NGFDAIATGH 155 >gi|20806605|ref|NP_621776.1| ATPase [Thermoanaerobacter tengcongensis MB4] gi|20515049|gb|AAM23380.1| predicted ATPase of the PP-loop superfamily implicated in cell cycle control [Thermoanaerobacter tengcongensis MB4] Length = 301 Score = 40.8 bits (94), Expect = 0.37, Method: Compositional matrix adjust. Identities = 21/37 (56%), Positives = 26/37 (70%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54 P RVVVA+SGG DS V A +LKR GY+V+G + L Sbjct: 45 PPKGRVVVAISGGKDSLVTAYVLKRLGYEVLGFFVDL 81 >gi|15606230|ref|NP_213608.1| hypothetical protein aq_898 [Aquifex aeolicus VF5] gi|2983434|gb|AAC07016.1| putative protein [Aquifex aeolicus VF5] Length = 251 Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 57/136 (41%), Gaps = 15/136 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDV------IGVTLQLYNSRKA-SKRKGSCCAGQDVY 74 + + +SGG+DSS+ L++ G +V G + + R +K GS V Sbjct: 5 KALALLSGGLDSSLAVKLVQEQGIEVKAFHFYTGFCITEFKRRLGQTKEDGS----PYVN 60 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 A + + V + D E + + VI P Y G+ PCVDC R + + Sbjct: 61 PAIKAAAQLGVPIEIVDISEEYYDVVINP---KYGYGKNVNPCVDC-RIMMLKKAKEIME 116 Query: 135 QLGADVLATGHYIRSR 150 + G D + TG + R Sbjct: 117 KEGYDFIVTGEVLYQR 132 >gi|307266583|ref|ZP_07548114.1| tRNA methyl transferase-like protein [Thermoanaerobacter wiegelii Rt8.B1] gi|326391761|ref|ZP_08213282.1| tRNA methyl transferase-like protein [Thermoanaerobacter ethanolicus JW 200] gi|306918380|gb|EFN48623.1| tRNA methyl transferase-like protein [Thermoanaerobacter wiegelii Rt8.B1] gi|325992199|gb|EGD50670.1| tRNA methyl transferase-like protein [Thermoanaerobacter ethanolicus JW 200] Length = 297 Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust. Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 26/136 (19%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL------YNSRKASKRKGSCCAGQ 71 P RVVVA+SGG DS V +LKR GY+V+G + L ++SR + Sbjct: 45 PPKGRVVVAISGGKDSLVTTFVLKRLGYEVLGFFIDLGIEENNFSSR-----------SR 93 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 +V + C ++ + +E+FR + A C C T K + Sbjct: 94 EVVE--NFCKENDIPLEIVSLKEKFRKGI------PDVAKHQDRICALCGVT-KRHLMNE 144 Query: 132 VTRQLGADVLATGHYI 147 T + AD LATGH + Sbjct: 145 YTLSVKADALATGHTL 160 >gi|213022904|ref|ZP_03337351.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 72 Score = 40.8 bits (94), Expect = 0.40, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 44/72 (61%), Gaps = 5/72 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + ++PK +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ Sbjct: 1 MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55 Query: 74 YDARRVCDTINV 85 DA+ VCD + + Sbjct: 56 ADAQAVCDKLGI 67 >gi|217968167|ref|YP_002353673.1| Argininosuccinate synthase [Dictyoglomus turgidum DSM 6724] gi|254807521|sp|B8E0N9|ASSY_DICTD RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|217337266|gb|ACK43059.1| Argininosuccinate synthase [Dictyoglomus turgidum DSM 6724] Length = 397 Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 16/126 (12%) Query: 22 RVVVAMSGGVDSSV-VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+A SGG+D+SV + L+++ DVI +T+ + G D+ + + Sbjct: 5 KVVLAYSGGLDTSVAIKWLMQKYSLDVITLTVDI-------------GQGIDLNEIKNKA 51 Query: 81 DTINVSH-YVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138 + + V YV D E F I+P S A E P +R + L+ V ++ GA Sbjct: 52 ENLGVEKAYVLDLREEFIKDYIIPAIKSNAMYERVYPLATALSRPLIAKYLVKVAKENGA 111 Query: 139 DVLATG 144 +A G Sbjct: 112 KYVAHG 117 >gi|332158560|ref|YP_004423839.1| hypothetical protein PNA2_0919 [Pyrococcus sp. NA2] gi|331034023|gb|AEC51835.1| hypothetical protein PNA2_0919 [Pyrococcus sp. NA2] Length = 302 Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 23/130 (17%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ +V+VA+SGG DS+V A +LK+ GY++ + + L + K ++Y AR+ Sbjct: 46 KNEKVLVAVSGGKDSAVTAYVLKKLGYNIECLHINLGIGEYSEK--------SEMY-ARK 96 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPL---PCVDCNRTVKFSDLLSVTRQ 135 C+ I ++ R R + Y GE PC C T ++ + Sbjct: 97 QCELIGAKLHIV----RIREIL------GYGIGEVRTRRPPCSYCGLTKRYI-MNKFAYD 145 Query: 136 LGADVLATGH 145 G D +ATGH Sbjct: 146 NGFDAIATGH 155 >gi|146295173|ref|YP_001178944.1| exsB protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|167016419|sp|A4XFR8|QUEC_CALS8 RecName: Full=7-cyano-7-deazaguanine synthase; AltName: Full=7-cyano-7-carbaguanine synthase; AltName: Full=PreQ(0) synthase; AltName: Full=Queuosine biosynthesis protein queC gi|145408749|gb|ABP65753.1| preQ(0) biosynthesis protein QueC [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 225 Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust. Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 34/200 (17%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR VV +SGG+DS+ + +K GY+ ++ LY + + +++ A++ C Sbjct: 1 MRAVVVLSGGMDSTTLLYDVKNQGYETYTISF-LYGQKHS----------KELEFAKKTC 49 Query: 81 DTINVSHYVFDY--------EERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 + + V H + D +++ VP Y E+ V NR + F LS+ Sbjct: 50 ELLKVPHKIVDISFFADLAPSALTKSSWSVP--EGYYTDESMKQTVVPNRNMVF---LSL 104 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIM--CRPMDLERDQSYFLFATTQQQLCDLRF 190 + A +L+ G I CR +E + L Q+ +L Sbjct: 105 ATSYAISLKA------QKLFYGAHAGDHPIYPDCRKEFVEAMKRSILLC--DYQIVELEA 156 Query: 191 PLGDMKKESVRDLAREMGLD 210 P D+KKE + + ++G+D Sbjct: 157 PYVDLKKEDILKIGLKLGVD 176 >gi|229081882|ref|ZP_04214374.1| Argininosuccinate synthase [Bacillus cereus Rock4-2] gi|228701470|gb|EEL53964.1| Argininosuccinate synthase [Bacillus cereus Rock4-2] Length = 411 Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV+A SGG+D+SV L+ YD+I + L L G+D+ + Sbjct: 15 KVVLAYSGGLDTSVAIKWLQEKNYDIIALCLDL-------------GEGKDLAFVKEKAI 61 Query: 82 TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 ++ + Y+ D +E F + + ++ E P V +R + L+ + Q GA Sbjct: 62 SVGAIKSYMIDVQEEFASEYALMAMQAHTLYEGKYPLVSALSRPLIAKKLVEIAEQEGAT 121 Query: 140 VLATG 144 +A G Sbjct: 122 AVAHG 126 >gi|289435441|ref|YP_003465313.1| hypothetical protein lse_2080 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171685|emb|CBH28231.1| argG [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 404 Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 25/130 (19%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77 ++V+A SGG+D+SV L GY++I +CC G+++ + Sbjct: 5 KIVLAYSGGLDTSVAIQWLVEAGYEII-----------------ACCLDVGEGKNLDFIK 47 Query: 78 RVCDTINVSH-YVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 T+ S Y D +E F A+I A +Y G+ PL +R + L+ V R Sbjct: 48 EKAITVGASQSYTIDAKEEFAEDFALIALQAHAYYEGKYPLISA-LSRPLIAKKLVEVAR 106 Query: 135 QLGADVLATG 144 + GA +A G Sbjct: 107 KEGASAIAHG 116 >gi|257052580|ref|YP_003130413.1| argininosuccinate synthase [Halorhabdus utahensis DSM 12940] gi|256691343|gb|ACV11680.1| argininosuccinate synthase [Halorhabdus utahensis DSM 12940] Length = 404 Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 55/127 (43%), Gaps = 21/127 (16%) Query: 23 VVVAMSGGVDSSVVAALLKRD-GY-DVIGVTLQLYNSRKASKRKGSCCAGQDVY---DAR 77 V +A SGG+D++V LLK + GY DVIGVT+ + GQ Y +A Sbjct: 10 VALAFSGGLDTTVCVPLLKEEYGYDDVIGVTVDV---------------GQPDYEFDEAE 54 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + + + HYV D E F + + ++ PL R V + V R+ G Sbjct: 55 ETAEALGLDHYVVDAREAFADLCLQAVEANADYQGYPLGTA-LARPVIAEGIADVAREQG 113 Query: 138 ADVLATG 144 LA G Sbjct: 114 CSALAHG 120 >gi|306822640|ref|ZP_07456018.1| argininosuccinate synthase [Bifidobacterium dentium ATCC 27679] gi|309800992|ref|ZP_07695124.1| argininosuccinate synthase [Bifidobacterium dentium JCVIHMP022] gi|304554185|gb|EFM42094.1| argininosuccinate synthase [Bifidobacterium dentium ATCC 27679] gi|308222528|gb|EFO78808.1| argininosuccinate synthase [Bifidobacterium dentium JCVIHMP022] Length = 418 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 19/128 (14%) Query: 22 RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTL---QLYNSRKASKRKGSCCAGQDVYDAR 77 R+V+A SGG+D+SV + LK R G DV+ V+L Q S + K++ C Sbjct: 12 RLVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKQRALACGA------- 64 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136 V YV D + F + + + A E P V +R + L+ Q Sbjct: 65 -------VEAYVVDARDEFADEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAHQF 117 Query: 137 GADVLATG 144 GAD ++ G Sbjct: 118 GADTISHG 125 >gi|171742782|ref|ZP_02918589.1| hypothetical protein BIFDEN_01896 [Bifidobacterium dentium ATCC 27678] gi|171278396|gb|EDT46057.1| hypothetical protein BIFDEN_01896 [Bifidobacterium dentium ATCC 27678] Length = 418 Score = 40.4 bits (93), Expect = 0.45, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 19/128 (14%) Query: 22 RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTL---QLYNSRKASKRKGSCCAGQDVYDAR 77 R+V+A SGG+D+SV + LK R G DV+ V+L Q S + K++ C Sbjct: 12 RLVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKQRALACGA------- 64 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136 V YV D + F + + + A E P V +R + L+ Q Sbjct: 65 -------VEAYVVDARDEFADEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAHQF 117 Query: 137 GADVLATG 144 GAD ++ G Sbjct: 118 GADTISHG 125 >gi|169839355|ref|ZP_02872543.1| hypothetical protein cdivTM_19937 [candidate division TM7 single-cell isolate TM7a] Length = 37 Score = 40.4 bits (93), Expect = 0.46, Method: Composition-based stats. Identities = 18/25 (72%), Positives = 22/25 (88%) Query: 29 GGVDSSVVAALLKRDGYDVIGVTLQ 53 GG+DSSV A LLK+ GY+VIGVTL+ Sbjct: 1 GGIDSSVAALLLKQQGYEVIGVTLK 25 >gi|227532775|ref|ZP_03962824.1| argininosuccinate synthase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227189609|gb|EEI69676.1| argininosuccinate synthase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 406 Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 12/124 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++V+A SGG+D+SV LK GY+VI V L + + K A Q ++ + Sbjct: 4 KIVLAYSGGLDTSVAIPWLKDKGYEVIAVVLNV------GQPKADFDAIQ-----QKALN 52 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140 + V D ++ F + + P + A E P V +R + L+ + A Sbjct: 53 VGALDSIVVDAQDEFADHYVAPVIKANALYEGDYPLVSALSRPLIIEHLVKIAHAQNATA 112 Query: 141 LATG 144 +A G Sbjct: 113 IAHG 116 >gi|307711102|ref|ZP_07647524.1| argininosuccinate synthase [Streptococcus mitis SK321] gi|307617064|gb|EFN96242.1| argininosuccinate synthase [Streptococcus mitis SK321] Length = 398 Score = 40.4 bits (93), Expect = 0.46, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +V++A SGG+D+SV LK+D Y+V+ V + + G+D+ + + Sbjct: 5 KVILAYSGGLDTSVAITWLKKD-YEVVAVCMDV-------------GEGKDLDFIHDKAL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 V YV D ++ F ++ S+A E P V +R + L+ + Q GA Sbjct: 51 KVGAVESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEIAHQTGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|283456168|ref|YP_003360732.1| argininosuccinate synthase [Bifidobacterium dentium Bd1] gi|283102802|gb|ADB09908.1| argG Argininosuccinate synthase [Bifidobacterium dentium Bd1] Length = 412 Score = 40.4 bits (93), Expect = 0.48, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 19/128 (14%) Query: 22 RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTL---QLYNSRKASKRKGSCCAGQDVYDAR 77 R+V+A SGG+D+SV + LK R G DV+ V+L Q S + K++ C Sbjct: 6 RLVLAYSGGLDTSVAISYLKERTGKDVVAVSLDVGQGGESLETIKQRALACGA------- 58 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136 V YV D + F + + + A E P V +R + L+ Q Sbjct: 59 -------VEAYVVDARDEFADEYCMKALKANAMYEGVYPLVSAISRPLISKHLVRAAHQF 111 Query: 137 GADVLATG 144 GAD ++ G Sbjct: 112 GADTISHG 119 >gi|191639758|ref|YP_001988924.1| argininosuccinate synthase [Lactobacillus casei BL23] gi|190714060|emb|CAQ68066.1| Argininosuccinate synthase (Citrulline--aspartate ligase) [Lactobacillus casei BL23] gi|327383871|gb|AEA55347.1| Argininosuccinate synthase [Lactobacillus casei LC2W] gi|327387052|gb|AEA58526.1| Argininosuccinate synthase [Lactobacillus casei BD-II] Length = 406 Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 12/124 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++V+A SGG+D+SV LK GY+VI V L + G A D ++ + Sbjct: 4 KIVLAYSGGLDTSVAIPWLKDKGYEVIAVVLNV----------GQPNADFDAIQ-QKALN 52 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140 + V D ++ F + + P + A E P V +R + L+ + A Sbjct: 53 VGALDSIVVDAQDEFADHYVAPVIKANALYEGDYPLVSALSRPLIIEHLVKIAHAQNATA 112 Query: 141 LATG 144 +A G Sbjct: 113 IAHG 116 >gi|213864987|ref|ZP_03387106.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 41 Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust. Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 5/44 (11%) Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 LGAD +ATGHY+R DGK R + R +D +DQSYFL+ Sbjct: 2 LGADYIATGHYVRR---ADVDGKSR--LLRGLDSNKDQSYFLYT 40 >gi|310658245|ref|YP_003935966.1| trnaile lysidine synthetase [Clostridium sticklandii DSM 519] gi|308825023|emb|CBH21061.1| tRNAile lysidine synthetase [Clostridium sticklandii] Length = 464 Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust. Identities = 34/125 (27%), Positives = 62/125 (49%), Gaps = 18/125 (14%) Query: 22 RVVVAMSGGVDS-SVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +++VA+SGG DS ++ AL K + Y +++Y + K +G A +D A ++C Sbjct: 21 KILVALSGGPDSVCLLHALKKLETY----YNIKIYAAHLNHKIRG-IEAQKDALYAAKLC 75 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D ++V +V A+ VP +YA E + + R +++ L V ++GA Sbjct: 76 DELDVPFFV--------KAIDVP---AYAK-EKKMTLEEAARKLRYDMLFEVKNRIGAKK 123 Query: 141 LATGH 145 +A H Sbjct: 124 IAVAH 128 >gi|116496233|ref|YP_807967.1| argininosuccinate synthase [Lactobacillus casei ATCC 334] gi|239630684|ref|ZP_04673715.1| argininosuccinate synthase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301067835|ref|YP_003789858.1| argininosuccinate synthase [Lactobacillus casei str. Zhang] gi|122262369|sp|Q033U7|ASSY_LACC3 RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|116106383|gb|ABJ71525.1| argininosuccinate synthase [Lactobacillus casei ATCC 334] gi|239526967|gb|EEQ65968.1| argininosuccinate synthase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300440242|gb|ADK20008.1| Argininosuccinate synthase [Lactobacillus casei str. Zhang] Length = 406 Score = 40.4 bits (93), Expect = 0.53, Method: Compositional matrix adjust. Identities = 32/124 (25%), Positives = 53/124 (42%), Gaps = 12/124 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++V+A SGG+D+SV LK GY+VI V L + G A D ++ + Sbjct: 4 KIVLAYSGGLDTSVAIPWLKDKGYEVIAVVLNV----------GQPNADFDAIQ-QKALN 52 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140 + V D ++ F + + P + A E P V +R + L+ + A Sbjct: 53 VGALDSIVVDAQDEFADHYVAPVIKANALYEGDYPLVSALSRPLIIEHLVKIAHAQNATA 112 Query: 141 LATG 144 +A G Sbjct: 113 IAHG 116 >gi|297182186|gb|ADI18357.1| argininosuccinate synthase [uncultured actinobacterium HF4000_04C13] Length = 419 Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust. Identities = 38/144 (26%), Positives = 68/144 (47%), Gaps = 19/144 (13%) Query: 5 EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKR 63 E + ++S + ++ P D +VV+A SGG+D+SV+ L+ + G +V+ T L Sbjct: 3 EGSEMSSDETNRTPVD-KVVLAYSGGLDTSVILRWLEEEYGCEVVTFTADL--------- 52 Query: 64 KGSCCAGQDVYDARRVCDTINVSH-YVFDYEERFRNAVIVPF--ASSYAAGETPLPCVDC 120 G+++ AR + + VS Y+ D E F + P A++ GE L Sbjct: 53 ----GQGEELEPARAKAEAMGVSEIYIEDLREEFVRDYVFPMFRANALYEGEY-LLGTSI 107 Query: 121 NRTVKFSDLLSVTRQLGADVLATG 144 R + L+ + + GAD ++ G Sbjct: 108 ARPLIAKRLVEIADETGADAISHG 131 >gi|87311761|ref|ZP_01093876.1| hypothetical protein DSM3645_20117 [Blastopirellula marina DSM 3645] gi|87285545|gb|EAQ77464.1| hypothetical protein DSM3645_20117 [Blastopirellula marina DSM 3645] Length = 276 Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust. Identities = 54/209 (25%), Positives = 79/209 (37%), Gaps = 47/209 (22%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R VA+SGGVDS+VVA L L S A + ++ +ARRV Sbjct: 19 RCAVALSGGVDSAVVAK----------AAHLALRESAVAVTARSPSVPASEIEEARRVAA 68 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + H + D +E +N + + A P C C +T +S + + + A ++ Sbjct: 69 EIGIRHEIVDTQE-TQNPLYIQNA--------PDRCFHC-KTELYSQIELLVAAIDAPLI 118 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKES 199 G V D G R M A Q +R PL + + K Sbjct: 119 ING------ANVDDQGDHRPGM--------------IAAKNHQ---VRSPLIECGLTKAD 155 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKY 228 VR LA+ L + DK S C + Y Sbjct: 156 VRALAQHWNLSVHDKPASP--CLASRIAY 182 >gi|319786829|ref|YP_004146304.1| argininosuccinate synthase [Pseudoxanthomonas suwonensis 11-1] gi|317465341|gb|ADV27073.1| argininosuccinate synthase [Pseudoxanthomonas suwonensis 11-1] Length = 414 Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust. Identities = 34/144 (23%), Positives = 54/144 (37%), Gaps = 12/144 (8%) Query: 3 VSEATRLNSLDLDKNPKDMR--VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 +S+A N NP +V+A SGG+D+S LK G++V V Sbjct: 1 MSQAASTNPESQSPNPAAASRDIVLAFSGGLDTSFCVPYLKEQGWNVHTVFAD------- 53 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 G A + Y +R + SH D N + PF + + P + Sbjct: 54 ---TGGVDAEERAYIEQRAAELGVASHVTIDGGAAIWNGFVKPFVQAGEGYQGQYPLLVS 110 Query: 121 NRTVKFSDLLSVTRQLGADVLATG 144 +R + L +LG + +A G Sbjct: 111 DRYLIVDAALKRAAELGTNAIAHG 134 >gi|194398639|ref|YP_002036823.1| argininosuccinate synthase [Streptococcus pneumoniae G54] gi|194358306|gb|ACF56754.1| argininosuccinate synthase [Streptococcus pneumoniae G54] Length = 139 Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust. Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 16/124 (12%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVCD 81 V++A SGG+D+SV LK+D YDV+ V + + G+D+ + + Sbjct: 6 VILAYSGGLDTSVAITWLKKD-YDVVAVCMDV-------------GEGKDLDFIHDKALK 51 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140 V YV D ++ F ++ S+A E P V +R + L+ + Q GA Sbjct: 52 VGAVESYVIDVKDEFATDYVLVALQSHAYYEQKYPLVSALSRPLISKKLVEIAHQTGATT 111 Query: 141 LATG 144 +A G Sbjct: 112 IAHG 115 >gi|90421099|ref|ZP_01229001.1| argininosuccinate synthase [Aurantimonas manganoxydans SI85-9A1] gi|90334591|gb|EAS48371.1| argininosuccinate synthase [Aurantimonas manganoxydans SI85-9A1] Length = 406 Score = 40.4 bits (93), Expect = 0.58, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 16/126 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+A SGG+D+S++ L+ + G +V+ T L G+++ AR+ Sbjct: 9 KVVLAYSGGLDTSIILKWLQTEYGAEVVTFTADL-------------GQGEELEPARKKA 55 Query: 81 DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + Y+ D E F + P + A E T L R + L+ + R+ GA Sbjct: 56 EMMGIKEIYIEDVREEFCRDFVFPMFRANAVYEGTYLLGTSIARPLISKRLVEIARETGA 115 Query: 139 DVLATG 144 D +A G Sbjct: 116 DAIAHG 121 >gi|167040416|ref|YP_001663401.1| PP-loop domain-containing protein [Thermoanaerobacter sp. X514] gi|300913703|ref|ZP_07131020.1| tRNA methyl transferase-like protein [Thermoanaerobacter sp. X561] gi|307723282|ref|YP_003903033.1| ATPase [Thermoanaerobacter sp. X513] gi|166854656|gb|ABY93065.1| PP-loop domain protein [Thermoanaerobacter sp. X514] gi|300890388|gb|EFK85533.1| tRNA methyl transferase-like protein [Thermoanaerobacter sp. X561] gi|307580343|gb|ADN53742.1| ATPase [Thermoanaerobacter sp. X513] Length = 297 Score = 40.0 bits (92), Expect = 0.59, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 26/37 (70%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54 P RVVVA+SGG DS V A +LK+ GY+V+G + L Sbjct: 45 PPKGRVVVAISGGKDSLVTAYVLKKLGYEVLGFFIDL 81 >gi|188997212|ref|YP_001931463.1| thiamine biosynthesis protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932279|gb|ACD66909.1| thiamine biosynthesis protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 355 Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust. Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 11/134 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS---RKASKRKGSCCAGQDVY--DA 76 + V SGG+DS++ L++ G DV+ L Y + +R+G Y A Sbjct: 4 KAVALYSGGLDSTLAIKLVQNQGIDVL--ALHFYTGFCITETKRRRGEKKEDGSHYMNPA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + + D + + + ++ P Y G PC+DC R F + +++ Sbjct: 62 LKYAAKYGFPLEIVDISDGYMDVILNP---KYGYGANINPCIDC-RIYMFKKAKEIMQEV 117 Query: 137 GADVLATGHYIRSR 150 GAD + +G + R Sbjct: 118 GADFVISGEVLGQR 131 >gi|300709585|ref|YP_003735399.1| tRNA methyl transferase [Halalkalicoccus jeotgali B3] gi|299123268|gb|ADJ13607.1| tRNA methyl transferase [Halalkalicoccus jeotgali B3] Length = 288 Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust. Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 10/72 (13%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V+VA SGGVDSS VAA+ YD +G A K ++ DARRV Sbjct: 20 VLVAFSGGVDSSAVAAI----AYDALG------EDAVACTAKSETLPDAELEDARRVAGE 69 Query: 83 INVSHYVFDYEE 94 I + H + ++ E Sbjct: 70 IGIRHEIVEFSE 81 >gi|241668630|ref|ZP_04756208.1| hypothetical protein FphipA2_07676 [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254877163|ref|ZP_05249873.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254843184|gb|EET21598.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 348 Score = 40.0 bits (92), Expect = 0.61, Method: Compositional matrix adjust. Identities = 31/140 (22%), Positives = 57/140 (40%), Gaps = 18/140 (12%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL--------QLYNSRKASKRKGSCCAG 70 K ++ V +SGG+DS + ++ G V G+ + RK K K Sbjct: 4 KQVKAVSLISGGLDSMLATKMMLEQGIHVEGINFFTGFCVEGHTHAIRKQDKEK------ 57 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 Q ++ V + + + ++ D E +++ ++ P Y G PC+DC + Sbjct: 58 QKRNNSLWVAEQLGIKLHIIDVIEEYKDVLLNP---KYGYGANMNPCLDC-KIFMVRKAK 113 Query: 131 SVTRQLGADVLATGHYIRSR 150 ++ G D + TG I R Sbjct: 114 EWAKENGFDFIITGEVIGQR 133 >gi|312128629|ref|YP_003993503.1| exsb protein [Caldicellulosiruptor hydrothermalis 108] gi|311778648|gb|ADQ08134.1| exsB protein [Caldicellulosiruptor hydrothermalis 108] Length = 234 Score = 40.0 bits (92), Expect = 0.63, Method: Compositional matrix adjust. Identities = 48/200 (24%), Positives = 86/200 (43%), Gaps = 30/200 (15%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + MR VV +SGG+DS+ + +K GY+V ++ LY + + +++ A++ Sbjct: 12 EKMRAVVVLSGGMDSTTLLYDVKSQGYEVFAISF-LYGQKHS----------KELEFAKK 60 Query: 79 VCDTINVSHYVFD---YEERFRNAVIVP---FASSYAAGETPLPCVDCNRTVKFSDLLSV 132 C +++ H + D + E +A+ P Y T V NR + LLS+ Sbjct: 61 TCSLLSIPHKIVDISFFAELAPSALTTPDWDVPEGYYTDSTMKQTVVPNRNMV---LLSI 117 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIM--CRPMDLERDQSYFLFATTQQQLCDLRF 190 + A ++ G +L+ G I CR +E ++ A +L Sbjct: 118 S---AAYAISLG---AKKLFYGAHAGDHPIYPDCRKEFVEVMKNALYLADYIG--LELEA 169 Query: 191 PLGDMKKESVRDLAREMGLD 210 P DMKKE + E+G++ Sbjct: 170 PYVDMKKEDILRRGLELGVN 189 >gi|110635672|ref|YP_675880.1| argininosuccinate synthase [Mesorhizobium sp. BNC1] gi|110286656|gb|ABG64715.1| argininosuccinate synthase [Chelativorans sp. BNC1] Length = 419 Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 65/143 (45%), Gaps = 17/143 (11%) Query: 6 ATRLNSLDLDKNPKDMR-VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKR 63 ATR +S KD++ VV+A SGG+D+S++ L+ + G +V+ T L Sbjct: 3 ATRTHSEKTMATHKDVKKVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL--------- 53 Query: 64 KGSCCAGQDVYDARRVCDTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCN 121 G+++ ARR + + + ++ D E F + P + A E T L Sbjct: 54 ----GQGEELEPARRKAEMLGIKEIHIEDLREEFVRDFVFPMFRANALYEGTYLLGTSIA 109 Query: 122 RTVKFSDLLSVTRQLGADVLATG 144 R + L+ + + GAD +A G Sbjct: 110 RPLIAKRLVEIAAETGADAIAHG 132 >gi|161527848|ref|YP_001581674.1| ExsB family protein [Nitrosopumilus maritimus SCM1] gi|160339149|gb|ABX12236.1| ExsB family protein [Nitrosopumilus maritimus SCM1] Length = 265 Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 19/92 (20%) Query: 7 TRLNSLD---LDKNPKDMRVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASK 62 T+LN L+ DKN +V++A+SGGVDS++VA A ++ G I VT Sbjct: 2 TKLNELENWFADKN----KVMIALSGGVDSALVAYAAYQKLGDFAIAVTADY-------- 49 Query: 63 RKGSCCAGQDVYDARRVCDTINVSHYVFDYEE 94 + +++ A+++C I ++ + DY+E Sbjct: 50 ---KTLSEEELQTAKQICSEIGITQFFLDYDE 78 >gi|159185316|ref|NP_355604.2| argininosuccinate synthase [Agrobacterium tumefaciens str. C58] gi|24211505|sp|Q8UC31|ASSY_AGRT5 RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|159140573|gb|AAK88389.2| argininosuccinate synthase [Agrobacterium tumefaciens str. C58] Length = 407 Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 17/131 (12%) Query: 18 PKDMR-VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 PKD++ VV+A SGG+D+S++ L+ + G +V+ T L G+++ Sbjct: 4 PKDVKKVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEP 50 Query: 76 ARRVCDTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVT 133 AR+ + + + +V D E F + P + A E L R + L+ + Sbjct: 51 ARKKAEMLGIKEIFVEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIEIA 110 Query: 134 RQLGADVLATG 144 ++ GAD +A G Sbjct: 111 KKTGADAIAHG 121 >gi|207092202|ref|ZP_03239989.1| hypothetical protein HpylHP_04230 [Helicobacter pylori HPKX_438_AG0C1] Length = 350 Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|154149314|ref|YP_001407132.1| thiamine biosynthesis protein:ExsB [Campylobacter hominis ATCC BAA-381] gi|153805323|gb|ABS52330.1| thiamine biosynthesis protein:ExsB [Campylobacter hominis ATCC BAA-381] Length = 327 Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 57/136 (41%), Gaps = 25/136 (18%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY------NSRKASKRKGSCCAGQDVY 74 M+ + SGG+DS + A ++ G +V + + + S ++R G A + Sbjct: 1 MKALALFSGGLDSMLAAKIISDMGVEVTALHIDIGFGSKDDKSEILARRAGVAGADFAII 60 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 D R EE +N V F+ Y G+ PC+DC+ + F L+ Sbjct: 61 DVR---------------EEYLKN---VLFSPKYGYGKHFNPCIDCHGFM-FRTALNSLA 101 Query: 135 QLGADVLATGHYIRSR 150 + GAD + TG + R Sbjct: 102 RFGADFIITGEVLGQR 117 >gi|327440413|dbj|BAK16778.1| argininosuccinate synthase [Solibacillus silvestris StLB046] Length = 404 Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 15/127 (11%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-R 78 + +VV+A SGG+D+SV LK G+DVI V L + G+D+ R + Sbjct: 3 NKKVVLAYSGGLDTSVAIPWLKEQGWDVIAVCLDV-------------GEGKDLEFIRNK 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137 V Y+ D ++ F + + E P V +R + L+ + + Sbjct: 50 ALQVGAVESYMIDAKDEFAEDFALISLQGHTWYEQKYPLVSALSRPLISKKLVEIANETN 109 Query: 138 ADVLATG 144 AD +A G Sbjct: 110 ADAVAHG 116 >gi|322368177|ref|ZP_08042746.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Haladaptatus paucihalophilus DX253] gi|320552193|gb|EFW93838.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Haladaptatus paucihalophilus DX253] Length = 320 Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust. Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 10/72 (13%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V+VA SGGVDSSVVAA+ +D +G + A K ++ DA RV D Sbjct: 21 VLVAFSGGVDSSVVAAI----AHDALG------DDAVACTAKSETLPEAELGDANRVADE 70 Query: 83 INVSHYVFDYEE 94 I + H V ++ E Sbjct: 71 IGIRHVVAEFSE 82 >gi|207108720|ref|ZP_03242882.1| hypothetical protein HpylH_04534 [Helicobacter pylori HPKX_438_CA4C1] Length = 178 Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|323475431|gb|ADX86037.1| exsB protein [Sulfolobus islandicus REY15A] Length = 464 Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust. Identities = 41/218 (18%), Positives = 91/218 (41%), Gaps = 29/218 (13%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 ++VS ++ +L + + K +V+V SGG+DS+V A L R+G++V + ++ + Sbjct: 222 VMVSSNKQITTLPIIEKRKKHKVLVVASGGLDSTVAATKLLREGHEVTLIHFNYHHKAEE 281 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVS--HYVFDYEERFRNAVIVPFASSYA-------AG 111 +R+ R++ + + V D + +A ++ Sbjct: 282 REREA----------VRKIAEHLQVPLIEINTDLFKMIGHATLIKGGGEIVKDRKGEEGA 331 Query: 112 ETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG-HYIRSRLYVGDDGKRRRIMCRPMDLE 170 E V + FS L++ G D +A+G + + Y ++ + R++ + Sbjct: 332 EFAHEWVPARNLIFFSAALAIAEAYGYDAIASGINLEEAGAYPDNEMEFIRMLSKLSP-- 389 Query: 171 RDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMG 208 +AT + ++ P+G++ K + L E+G Sbjct: 390 -------YATGPNKKVEVLMPVGNLMKHEIVKLGYEIG 420 >gi|317011869|gb|ADU82477.1| hypothetical protein HPLT_00060 [Helicobacter pylori Lithuania75] Length = 350 Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KQIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|225849269|ref|YP_002729433.1| tRNA methyl transferase [Sulfurihydrogenibium azorense Az-Fu1] gi|225644241|gb|ACN99291.1| tRNA methyl transferase [Sulfurihydrogenibium azorense Az-Fu1] Length = 349 Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust. Identities = 29/132 (21%), Positives = 55/132 (41%), Gaps = 7/132 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVY--DARR 78 + V SGG+DS++ L++ G D++ V + + +R+G Y A + Sbjct: 4 KAVALYSGGLDSTLAIRLIQNQGIDILAVHFYTGFCITETKRRRGEKKEDGTHYMNPALK 63 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + D + + + ++ P Y G PC+DC R F + ++GA Sbjct: 64 YAAKYGFPLEIVDISDGYMDVILNP---KYGYGANINPCIDC-RIYMFKKAKQIMEEIGA 119 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 120 DFIISGEVLGQR 131 >gi|15644646|ref|NP_206815.1| hypothetical protein HP0013 [Helicobacter pylori 26695] gi|2313087|gb|AAD07083.1| predicted coding region HP0013 [Helicobacter pylori 26695] Length = 350 Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|152977001|ref|YP_001376518.1| argininosuccinate synthase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189046380|sp|A7GTR5|ASSY_BACCN RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|152025753|gb|ABS23523.1| Argininosuccinate synthase [Bacillus cytotoxicus NVH 391-98] Length = 401 Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +VV+A SGG+D+SV L+ YDVI + L L G+D+ + + Sbjct: 5 KVVLAYSGGLDTSVAIKWLQEKNYDVIALCLDL-------------GEGEDLEFVKEKAL 51 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + Y+ D +E F N + + E P V +R + L+ + GA Sbjct: 52 SVGAIKSYMIDVQEEFMNEYALVALQGHTLYEGKYPLVSALSRPLIAKKLVEIAELEGAS 111 Query: 140 VLATG 144 +A G Sbjct: 112 AVAHG 116 >gi|111657060|ref|ZP_01407855.1| hypothetical protein SpneT_02001713 [Streptococcus pneumoniae TIGR4] gi|85720578|gb|ABC75801.1| argininosuccinate synthase, truncation [Streptococcus pneumoniae TIGR4] Length = 139 Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 16/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 +V++A SGG+D+SV LK+D YDV+ V + + G+D+ + + Sbjct: 5 KVILAYSGGLDTSVAITWLKKD-YDVVSVCMDV-------------GEGKDLDFIHDKAL 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 V YV D ++ F ++ S+A E V +R + L+ + Q+GA Sbjct: 51 KVWAVESYVIDVKDEFATDYVLVAHQSHAYYEQKYLLVSALSRPLISKKLVEIAHQIGAT 110 Query: 140 VLATG 144 +A G Sbjct: 111 TIAHG 115 >gi|150398257|ref|YP_001328724.1| argininosuccinate synthase [Sinorhizobium medicae WSM419] gi|166221022|sp|A6UE09|ASSY_SINMW RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|150029772|gb|ABR61889.1| Argininosuccinate synthase [Sinorhizobium medicae WSM419] Length = 405 Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 16/126 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+A SGG+D+S++ L+ + G +V+ T L G+++ AR+ Sbjct: 9 KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 55 Query: 81 DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + Y+ D E F + P + A E L R + L+ + R+ GA Sbjct: 56 EMLGIKEIYIEDVREEFVKDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIARKTGA 115 Query: 139 DVLATG 144 D +A G Sbjct: 116 DAIAHG 121 >gi|52549269|gb|AAU83118.1| argininosuccinate synthase [uncultured archaeon GZfos26F9] Length = 388 Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 20/128 (15%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTL---QLYNSRKASKRKGSCCAGQDVYDA 76 +VV+A SGG+D+SV LLK GYD VI VT+ Q + K +K +G+ Sbjct: 3 KVVLAYSGGLDTSVCIPLLKEHYGYDEVIAVTVDVGQPEDDIKEAKERGA---------- 52 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++CD S+ D +E F I P + + E + R + ++ V R+ Sbjct: 53 -KLCD----SYREIDAKEEFVRDYIFPLIKANGSYEGYVLGTAIARPLIAKHVVEVAREE 107 Query: 137 GADVLATG 144 AD +A G Sbjct: 108 KADAVAHG 115 >gi|121602703|ref|YP_989608.1| argininosuccinate synthase [Bartonella bacilliformis KC583] gi|166219947|sp|A1UUF5|ASSY_BARBK RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|120614880|gb|ABM45481.1| argininosuccinate synthase [Bartonella bacilliformis KC583] Length = 407 Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 16/126 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+A SGG+D+S++ L+ + G +V+ T L G+++ ARR Sbjct: 9 KVVLAYSGGLDTSIILKWLQSELGAEVVTFTADL-------------GQGEELESARRKA 55 Query: 81 DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + Y+ D E F + P + A E L R + L+ + ++ GA Sbjct: 56 EIMGIKEIYIEDLREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKRLIEIAKETGA 115 Query: 139 DVLATG 144 D +A G Sbjct: 116 DAIAHG 121 >gi|289548750|ref|YP_003473738.1| tRNA methyl transferase-like protein [Thermocrinis albus DSM 14484] gi|289182367|gb|ADC89611.1| tRNA methyl transferase-like protein [Thermocrinis albus DSM 14484] Length = 346 Score = 39.7 bits (91), Expect = 0.77, Method: Compositional matrix adjust. Identities = 60/281 (21%), Positives = 111/281 (39%), Gaps = 50/281 (17%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDV------IGVTLQLYNSRKASKRKGSCCAGQDVY 74 +R V +SGG+DSS+ LL+ G ++ G + + R +R+ Q V Sbjct: 3 VRAVALLSGGLDSSLAVRLLQDQGVEIKALHFYTGFCITEHKRRLGLRRED---GQQYVN 59 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 A R + V + D + + + ++ P Y G+ PCVDC R + + Sbjct: 60 PALRAAAQLGVPIEIVDISKEYIHVLLNP---KYGYGKNVNPCVDC-RIMMLRKAKEIME 115 Query: 135 QLGADVLATGHYIRSR---------LYVGDDGKRRRIMCRPMD---LERDQSYFLFATTQ 182 + G + TG + R + + ++ + ++ RP+ L L + Sbjct: 116 KEGYQFVVTGEVLGQRPMSQTYQRLMLIEEEADLKGLVLRPLSAKLLPPTIPEKLGWVDR 175 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 ++L +R G +K + +LA+ GL+ + + C++ Y R +++E Sbjct: 176 ERLLGIR---GRGRKVQI-ELAKRYGLEY--QQPAGGCCYLTDETY---AFRFKEALSVE 226 Query: 243 GDIV-----------HLN-----GQILGRHNGIINYTIGQR 267 G I HL I+ RH G +N+ G R Sbjct: 227 GKITEDDLVLFSVGRHLRLPSGVKVIVARHEGEVNFLQGFR 267 >gi|325294037|ref|YP_004279901.1| Argininosuccinate synthase [Agrobacterium sp. H13-3] gi|325061890|gb|ADY65581.1| Argininosuccinate synthase [Agrobacterium sp. H13-3] Length = 446 Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust. Identities = 34/131 (25%), Positives = 61/131 (46%), Gaps = 17/131 (12%) Query: 18 PKDMR-VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 PKD++ VV+A SGG+D+S++ L+ + G +V+ T L G+++ Sbjct: 43 PKDVKKVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEP 89 Query: 76 ARRVCDTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVT 133 AR+ + + + +V D E F + P + A E L R + L+ + Sbjct: 90 ARKKAELLGIKEIFVEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIEIA 149 Query: 134 RQLGADVLATG 144 ++ GAD +A G Sbjct: 150 KKTGADAIAHG 160 >gi|167038552|ref|YP_001666130.1| PP-loop domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116948|ref|YP_004187107.1| PP-loop domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857386|gb|ABY95794.1| PP-loop domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319930039|gb|ADV80724.1| PP-loop domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 298 Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 25/37 (67%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54 P RVVVA+SGG DS V +LKR GY+V+G + L Sbjct: 45 PPKGRVVVAISGGKDSLVTTFVLKRLGYEVLGFFIDL 81 >gi|256752672|ref|ZP_05493523.1| PP-loop domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|256748434|gb|EEU61487.1| PP-loop domain protein [Thermoanaerobacter ethanolicus CCSD1] Length = 298 Score = 39.7 bits (91), Expect = 0.78, Method: Compositional matrix adjust. Identities = 20/37 (54%), Positives = 25/37 (67%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54 P RVVVA+SGG DS V +LKR GY+V+G + L Sbjct: 45 PPKGRVVVAISGGKDSLVTTFVLKRLGYEVLGFFIDL 81 >gi|138896319|ref|YP_001126772.1| argininosuccinate synthase [Geobacillus thermodenitrificans NG80-2] gi|196249942|ref|ZP_03148637.1| Argininosuccinate synthase [Geobacillus sp. G11MC16] gi|166219967|sp|A4IRS3|ASSY_GEOTN RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|134267832|gb|ABO68027.1| Argininosuccinate synthase [Geobacillus thermodenitrificans NG80-2] gi|196210456|gb|EDY05220.1| Argininosuccinate synthase [Geobacillus sp. G11MC16] Length = 406 Score = 39.7 bits (91), Expect = 0.79, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 20/131 (15%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YD 75 NPK +V+A SGG+D+SV L+ GYDVI L L G+D+ + Sbjct: 3 NPK---LVLAYSGGLDTSVAIKWLQERGYDVIACCLDL-------------GEGKDLDFV 46 Query: 76 ARRVCDTINVSHYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 + + YV D ++ F N A+I A++ G+ PL +R + L+ + Sbjct: 47 KEKALKVGAIKSYVIDVKDEFANEYALIALQANALYEGKYPL-VSALSRPLIAKKLVEIA 105 Query: 134 RQLGADVLATG 144 GA +A G Sbjct: 106 ELEGAVAVAHG 116 >gi|329116299|ref|ZP_08245016.1| argininosuccinate synthase [Streptococcus parauberis NCFD 2020] gi|326906704|gb|EGE53618.1| argininosuccinate synthase [Streptococcus parauberis NCFD 2020] Length = 400 Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust. Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 20/127 (15%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD---VYDARR 78 ++++A SGG+D+SV A LK + YDV+ V + + G+D ++D Sbjct: 5 KLILAYSGGLDTSVAIAWLK-EKYDVVAVCMDV-------------GEGKDLDFIHDKAL 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137 + V +V D +++F ++P ++A E P + +R + L+ + Q Sbjct: 51 MVGA--VESFVIDVKDQFAEEFVLPALQAHAFYEQKYPLISALSRPLISQKLVEIAHQTN 108 Query: 138 ADVLATG 144 A ++A G Sbjct: 109 ASLIAHG 115 >gi|118576754|ref|YP_876497.1| ATP-utilizing enzyme of the PP-loop superfamily [Cenarchaeum symbiosum A] gi|118195275|gb|ABK78193.1| ATP-utilizing enzyme of the PP-loop superfamily [Cenarchaeum symbiosum A] Length = 264 Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 12/74 (16%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RV+VA+SGGVDS++VA R G I VT Y + A ++ DA+RVC Sbjct: 16 RVMVALSGGVDSALVAYAAHRALGDGAIAVTAD-YKT----------LAQDELADAKRVC 64 Query: 81 DTINVSHYVFDYEE 94 I + H + Y+E Sbjct: 65 SEIGMQHMLITYDE 78 >gi|222150070|ref|YP_002551027.1| argininosuccinate synthase [Agrobacterium vitis S4] gi|221737052|gb|ACM38015.1| argininosuccinate synthase [Agrobacterium vitis S4] Length = 409 Score = 39.7 bits (91), Expect = 0.82, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 61/131 (46%), Gaps = 17/131 (12%) Query: 18 PKDMR-VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 PKD++ VV+A SGG+D+S++ L+ + G +V+ T L G+++ Sbjct: 4 PKDVKKVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEP 50 Query: 76 ARRVCDTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVT 133 AR+ + + + ++ D E F + P + A E L R + L+ + Sbjct: 51 ARKKAEMLGIKEIFIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIEIA 110 Query: 134 RQLGADVLATG 144 ++ GAD +A G Sbjct: 111 KKTGADAIAHG 121 >gi|308183811|ref|YP_003927944.1| hypothetical protein HPSJM_00075 [Helicobacter pylori SJM180] gi|308059731|gb|ADO01627.1| hypothetical protein HPSJM_00075 [Helicobacter pylori SJM180] Length = 350 Score = 39.7 bits (91), Expect = 0.83, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|254778749|ref|YP_003056854.1| hypothetical protein HELPY_0011 [Helicobacter pylori B38] gi|254000660|emb|CAX28569.1| Conserved hypothetical protein; putative signal peptide [Helicobacter pylori B38] Length = 350 Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|261418229|ref|YP_003251911.1| argininosuccinate synthase [Geobacillus sp. Y412MC61] gi|319767811|ref|YP_004133312.1| argininosuccinate synthase [Geobacillus sp. Y412MC52] gi|261374686|gb|ACX77429.1| argininosuccinate synthase [Geobacillus sp. Y412MC61] gi|317112677|gb|ADU95169.1| argininosuccinate synthase [Geobacillus sp. Y412MC52] Length = 406 Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 20/131 (15%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YD 75 NPK +V+A SGG+D+SV L+ GYDVI L L G+D+ + Sbjct: 3 NPK---LVLAYSGGLDTSVAIKWLQERGYDVIACCLDL-------------GEGKDLDFV 46 Query: 76 ARRVCDTINVSHYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 + + YV D ++ F N A+I A++ G+ PL +R + L+ + Sbjct: 47 KEKALKVGAIKSYVIDVKDEFANEYALIALQANALYEGKYPL-VSALSRPLIAKKLVEIA 105 Query: 134 RQLGADVLATG 144 GA +A G Sbjct: 106 ELEGAVAVAHG 116 >gi|253581434|ref|ZP_04858659.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium varium ATCC 27725] gi|251836504|gb|EES65039.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium varium ATCC 27725] Length = 333 Score = 39.7 bits (91), Expect = 0.84, Method: Compositional matrix adjust. Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 16/132 (12%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS++ ++K G +VI + S G A + Sbjct: 3 KKIKALALFSGGLDSALAVKVIKDQGVEVIALNFV------------SHFFGGKNEKAEK 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + D++ R V P Y G+ PC+DC+ ++ F + + GA Sbjct: 51 MAEQLGIKLEYIDFKSRHTEIVKNPV---YGRGKNMNPCIDCH-SLMFKIAGELLEEYGA 106 Query: 139 DVLATGHYIRSR 150 + +G + R Sbjct: 107 QFVISGEVLGQR 118 >gi|78776227|ref|YP_392542.1| thiamine biosynthesis protein:ExsB [Sulfurimonas denitrificans DSM 1251] gi|78496767|gb|ABB43307.1| Thiamine biosynthesis protein:ExsB [Sulfurimonas denitrificans DSM 1251] Length = 326 Score = 39.7 bits (91), Expect = 0.88, Method: Compositional matrix adjust. Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 13/130 (10%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+ + SGG+DS++ L+ G +V+ V + G + + +C Sbjct: 1 MKAIALFSGGLDSTLALKLIIDQGIEVLAVNIN----------TGFGSTKDRLEHMQNMC 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + D E F V+ F + G+ PC+DC+ + F+ V GA Sbjct: 51 AQVGAELKIIDIESEFLQDVL--FDPKHGYGKNFNPCIDCHAKM-FAVAKRVMESEGASF 107 Query: 141 LATGHYIRSR 150 L +G + R Sbjct: 108 LISGEVLGQR 117 >gi|109948168|ref|YP_665396.1| tRNA methyltransferase [Helicobacter acinonychis str. Sheeba] gi|109715389|emb|CAK00397.1| tRNA methyltransferase [Helicobacter acinonychis str. Sheeba] Length = 350 Score = 39.7 bits (91), Expect = 0.90, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|218681025|ref|ZP_03528922.1| argininosuccinate synthase [Rhizobium etli CIAT 894] Length = 407 Score = 39.7 bits (91), Expect = 0.90, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 16/126 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+A SGG+D+S++ L+ + G +V+ T L G+++ AR+ Sbjct: 9 KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 55 Query: 81 DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + Y+ D E F + P + A E L R + L+ + R+ GA Sbjct: 56 EMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIARKTGA 115 Query: 139 DVLATG 144 D +A G Sbjct: 116 DAIAHG 121 >gi|88604066|ref|YP_504244.1| ExsB [Methanospirillum hungatei JF-1] gi|110816233|sp|Q2FS65|QUEC_METHJ RecName: Full=7-cyano-7-deazaguanine synthase; AltName: Full=7-cyano-7-carbaguanine synthase; AltName: Full=Archaeosine biosynthesis protein queC; AltName: Full=PreQ(0) synthase gi|88189528|gb|ABD42525.1| preQ(0) biosynthesis protein QueC [Methanospirillum hungatei JF-1] Length = 220 Score = 39.7 bits (91), Expect = 0.90, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 1/44 (2%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64 M+ V +SGG+DSS +A L K DGYD++ + Y R K + Sbjct: 1 MKAVCLLSGGMDSSTLACLAKHDGYDILALHFS-YGQRTEEKER 43 >gi|206901533|ref|YP_002251489.1| argininosuccinate synthase [Dictyoglomus thermophilum H-6-12] gi|254807520|sp|B5YAL9|ASSY_DICT6 RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|206740636|gb|ACI19694.1| argininosuccinate synthase [Dictyoglomus thermophilum H-6-12] Length = 397 Score = 39.7 bits (91), Expect = 0.91, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 60/129 (46%), Gaps = 16/129 (12%) Query: 19 KDMRVVVAMSGGVDSSV-VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 K +VV+A SGG+D+SV + L+++ DVI +T+ + G ++ + + Sbjct: 2 KKEKVVLAYSGGLDTSVAIKWLMQKYSLDVITLTVDI-------------GQGINLDEIK 48 Query: 78 RVCDTINVSH-YVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQ 135 + + V YV D +E F I+P S A E P +R + L+ + ++ Sbjct: 49 NKAENLGVEKAYVLDLKEEFVKDYIIPAIKSNAMYERVYPLATALSRPLIAKYLVKIAKE 108 Query: 136 LGADVLATG 144 GA +A G Sbjct: 109 NGAKYVAHG 117 >gi|239828037|ref|YP_002950661.1| argininosuccinate synthase [Geobacillus sp. WCH70] gi|259585361|sp|C5D679|ASSY_GEOSW RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|239808330|gb|ACS25395.1| argininosuccinate synthase [Geobacillus sp. WCH70] Length = 402 Score = 39.7 bits (91), Expect = 0.92, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 18/130 (13%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YD 75 NPK +V+A SGG+D+SV L+ GYDVI L L G+D+ + Sbjct: 3 NPK---LVLAYSGGLDTSVAIKWLQERGYDVIACCLDL-------------GEGKDLDFV 46 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTR 134 + + YV D +E F + + ++A E P V +R + L+ + Sbjct: 47 KEKALKVGAIKSYVIDVKEEFADEYALIALQAHALYEGKYPLVSALSRPLIAKKLVEIAE 106 Query: 135 QLGADVLATG 144 GA +A G Sbjct: 107 LEGAVAVAHG 116 >gi|328950002|ref|YP_004367337.1| PP-loop domain protein [Marinithermus hydrothermalis DSM 14884] gi|328450326|gb|AEB11227.1| PP-loop domain protein [Marinithermus hydrothermalis DSM 14884] Length = 328 Score = 39.7 bits (91), Expect = 0.93, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 29/133 (21%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+VA+SGG DS + +L R GY+ G+ +QL G Y R Sbjct: 49 RVLVAISGGKDSLALWEVLTRLGYEATGLHIQL---------------GIGEYSERAYEV 93 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPL-------PCVDCNRTVKFSDLLSVTR 134 T + ER ++V A SY G L C C + ++ + V R Sbjct: 94 TTRFAR------ERGLPLIVVDLAESYGLGVPELSLATGRVACSGCGLSKRYL-MNEVAR 146 Query: 135 QLGADVLATGHYI 147 + G +V+ATGH + Sbjct: 147 EEGFNVVATGHNL 159 >gi|37526660|ref|NP_930004.1| hypothetical protein plu2770 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786092|emb|CAE15144.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 510 Score = 39.7 bits (91), Expect = 0.93, Method: Compositional matrix adjust. Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 15/81 (18%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D+ V + SGG+DS++V L K+ +D+ ++ L S+ D+ A+R Sbjct: 228 DLPVSIMFSGGIDSTIVLYLAKKYHHDITAISFGLPGSK-------------DIEIAQRY 274 Query: 80 CDTINVSH--YVFDYEERFRN 98 C N+ H Y F EE N Sbjct: 275 CTENNIKHIIYTFTQEELINN 295 >gi|108562438|ref|YP_626754.1| hypothetical protein HPAG1_0013 [Helicobacter pylori HPAG1] gi|107836211|gb|ABF84080.1| argininosuccinate synthase [Helicobacter pylori HPAG1] Length = 350 Score = 39.7 bits (91), Expect = 0.93, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|227828356|ref|YP_002830136.1| exsB protein [Sulfolobus islandicus M.14.25] gi|229585586|ref|YP_002844088.1| exsB protein [Sulfolobus islandicus M.16.27] gi|238620549|ref|YP_002915375.1| exsB protein [Sulfolobus islandicus M.16.4] gi|227460152|gb|ACP38838.1| exsB protein [Sulfolobus islandicus M.14.25] gi|228020636|gb|ACP56043.1| exsB protein [Sulfolobus islandicus M.16.27] gi|238381619|gb|ACR42707.1| exsB protein [Sulfolobus islandicus M.16.4] gi|323478152|gb|ADX83390.1| exsB protein [Sulfolobus islandicus HVE10/4] Length = 464 Score = 39.7 bits (91), Expect = 0.94, Method: Compositional matrix adjust. Identities = 41/218 (18%), Positives = 91/218 (41%), Gaps = 29/218 (13%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 ++VS ++ +L + + K +V+V SGG+DS+V A L R+G++V + ++ + Sbjct: 222 VMVSSNKQITTLPIIEKRKKHKVLVVASGGLDSTVAATKLLREGHEVTLIHFNYHHKAEE 281 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVS--HYVFDYEERFRNAVIVPFASSYA-------AG 111 +R+ R++ + + V D + +A ++ Sbjct: 282 REREA----------VRKIAEHLQVPLIEINTDLFKMIGHATLIKGGGEIVKDRKGEEGA 331 Query: 112 ETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG-HYIRSRLYVGDDGKRRRIMCRPMDLE 170 E V + FS L++ G D +A+G + + Y ++ + R++ + Sbjct: 332 EFAHEWVPARNLIFFSAALAIAEAYGYDAIASGINLEEAGAYPDNEMEFIRMLSKLSP-- 389 Query: 171 RDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMG 208 +AT + ++ P+G++ K + L E+G Sbjct: 390 -------YATGPNKKVEVLMPVGNLVKHEIVKLGYEIG 420 >gi|229579998|ref|YP_002838398.1| exsB protein [Sulfolobus islandicus Y.G.57.14] gi|229581341|ref|YP_002839740.1| exsB protein [Sulfolobus islandicus Y.N.15.51] gi|284998612|ref|YP_003420380.1| exsB protein [Sulfolobus islandicus L.D.8.5] gi|228010714|gb|ACP46476.1| exsB protein [Sulfolobus islandicus Y.G.57.14] gi|228012057|gb|ACP47818.1| exsB protein [Sulfolobus islandicus Y.N.15.51] gi|284446508|gb|ADB88010.1| exsB protein [Sulfolobus islandicus L.D.8.5] Length = 464 Score = 39.7 bits (91), Expect = 0.94, Method: Compositional matrix adjust. Identities = 41/218 (18%), Positives = 91/218 (41%), Gaps = 29/218 (13%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 ++VS ++ +L + + K +V+V SGG+DS+V A L R+G++V + ++ + Sbjct: 222 VMVSSNKQITTLPIIEKRKKHKVLVVASGGLDSTVAATKLLREGHEVTLIHFNYHHKAEE 281 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVS--HYVFDYEERFRNAVIVPFASSYA-------AG 111 +R+ R++ + + V D + +A ++ Sbjct: 282 REREA----------VRKIAEHLQVPLIEINTDLFKMIGHATLIKGGGEIVKDRKGEEGA 331 Query: 112 ETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG-HYIRSRLYVGDDGKRRRIMCRPMDLE 170 E V + FS L++ G D +A+G + + Y ++ + R++ + Sbjct: 332 EFAHEWVPARNLIFFSAALAIAEAYGYDAIASGINLEEAGAYPDNEMEFIRMLSKLSP-- 389 Query: 171 RDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMG 208 +AT + ++ P+G++ K + L E+G Sbjct: 390 -------YATGPNKKVEVLMPVGNLVKHEIVKLGYEIG 420 >gi|86359504|ref|YP_471396.1| argininosuccinate synthase [Rhizobium etli CFN 42] gi|119361313|sp|Q2K3B7|ASSY_RHIEC RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|86283606|gb|ABC92669.1| argininosuccinate synthase protein [Rhizobium etli CFN 42] Length = 407 Score = 39.7 bits (91), Expect = 0.94, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 16/126 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+A SGG+D+S++ L+ + G +V+ T L G+++ AR+ Sbjct: 9 KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 55 Query: 81 DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + Y+ D E F + P + A E L R + L+ + R+ GA Sbjct: 56 EMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIARKTGA 115 Query: 139 DVLATG 144 D +A G Sbjct: 116 DAIAHG 121 >gi|297529083|ref|YP_003670358.1| argininosuccinate synthase [Geobacillus sp. C56-T3] gi|297252335|gb|ADI25781.1| argininosuccinate synthase [Geobacillus sp. C56-T3] Length = 406 Score = 39.7 bits (91), Expect = 0.95, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 20/131 (15%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YD 75 NPK +V+A SGG+D+SV L+ GYDVI L L G+D+ + Sbjct: 3 NPK---LVLAYSGGLDTSVAIKWLQERGYDVIACCLDL-------------GEGKDLDFV 46 Query: 76 ARRVCDTINVSHYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 + + YV D ++ F N A+I A++ G+ PL +R + L+ + Sbjct: 47 KEKALKVGAIKSYVIDVKDEFANEYALIALQANALYEGKYPL-VSALSRPLIAKKLVEIA 105 Query: 134 RQLGADVLATG 144 GA +A G Sbjct: 106 ELEGAVAVAHG 116 >gi|209551290|ref|YP_002283207.1| argininosuccinate synthase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537046|gb|ACI56981.1| Argininosuccinate synthase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 407 Score = 39.7 bits (91), Expect = 0.95, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 16/126 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+A SGG+D+S++ L+ + G +V+ T L G+++ AR+ Sbjct: 9 KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 55 Query: 81 DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + Y+ D E F + P + A E L R + L+ + R+ GA Sbjct: 56 EMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIARKTGA 115 Query: 139 DVLATG 144 D +A G Sbjct: 116 DAIAHG 121 >gi|15966962|ref|NP_387315.1| argininosuccinate synthase [Sinorhizobium meliloti 1021] gi|307301735|ref|ZP_07581494.1| argininosuccinate synthase [Sinorhizobium meliloti BL225C] gi|307316240|ref|ZP_07595684.1| argininosuccinate synthase [Sinorhizobium meliloti AK83] gi|24211519|sp|Q92L73|ASSY_RHIME RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|15076235|emb|CAC47788.1| Probable argininosuccinate synthase [Sinorhizobium meliloti 1021] gi|306898080|gb|EFN28822.1| argininosuccinate synthase [Sinorhizobium meliloti AK83] gi|306903433|gb|EFN34022.1| argininosuccinate synthase [Sinorhizobium meliloti BL225C] Length = 405 Score = 39.7 bits (91), Expect = 0.97, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 16/126 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+A SGG+D+S++ L+ + G +V+ T L G+++ AR+ Sbjct: 9 KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 55 Query: 81 DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + Y+ D E F + P + A E L R + L+ + R+ GA Sbjct: 56 EMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIARKTGA 115 Query: 139 DVLATG 144 D +A G Sbjct: 116 DAIAHG 121 >gi|289807044|ref|ZP_06537673.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 85 Score = 39.7 bits (91), Expect = 0.97, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 5/59 (8%) Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG 293 A G I+ ++G +G H G++ +T+GQR+GLG+ +P +VV D ++ +IV Sbjct: 3 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVA 61 >gi|52081436|ref|YP_080227.1| argininosuccinate synthase [Bacillus licheniformis ATCC 14580] gi|52786811|ref|YP_092640.1| argininosuccinate synthase [Bacillus licheniformis ATCC 14580] gi|319647344|ref|ZP_08001566.1| argininosuccinate synthase [Bacillus sp. BT1B_CT2] gi|59799163|sp|Q65G67|ASSY_BACLD RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|52004647|gb|AAU24589.1| argininosuccinate synthase [Bacillus licheniformis ATCC 14580] gi|52349313|gb|AAU41947.1| ArgG [Bacillus licheniformis ATCC 14580] gi|317390691|gb|EFV71496.1| argininosuccinate synthase [Bacillus sp. BT1B_CT2] Length = 403 Score = 39.7 bits (91), Expect = 0.97, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 23/129 (17%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDVYDAR 77 +VV+A SGG+D+SV L+ GYDV+ +CC G+D+ + Sbjct: 6 KVVLAYSGGLDTSVAIKWLQEQGYDVV-----------------ACCLDVGEGKDLAFVQ 48 Query: 78 RVCDTINVSH-YVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQ 135 + + S+ YV D +E F + ++ E P V +R + L+ V + Sbjct: 49 QKALQVGASNSYVIDAKEEFAKEFALTALQAHTLYEGKYPLVSALSRPLIAKKLVEVAEK 108 Query: 136 LGADVLATG 144 A +A G Sbjct: 109 ENAQAVAHG 117 >gi|15611082|ref|NP_222733.1| hypothetical protein jhp0011 [Helicobacter pylori J99] gi|4154513|gb|AAD05593.1| putative [Helicobacter pylori J99] Length = 350 Score = 39.7 bits (91), Expect = 0.98, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KQIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|291277103|ref|YP_003516875.1| putative tRNA methyltransferase [Helicobacter mustelae 12198] gi|290964297|emb|CBG40147.1| putative tRNA methyltransferase [Helicobacter mustelae 12198] Length = 346 Score = 39.7 bits (91), Expect = 0.99, Method: Compositional matrix adjust. Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 13/127 (10%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83 + SGG+DS + LLK +VI + + K++ A + + +CD Sbjct: 1 MALFSGGLDSLISMKLLKDQNIEVIALHFNIGFGGNYDKKEYLLNATKQIGVELLICD-- 58 Query: 84 NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143 + FD + FA Y G+ PC+DC+ + F +LGAD + + Sbjct: 59 -IRQQFFDN---------ILFAPKYGYGKYFNPCIDCHANM-FIQAFDKLLELGADFIIS 107 Query: 144 GHYIRSR 150 G + R Sbjct: 108 GEVLGQR 114 >gi|208433988|ref|YP_002265654.1| arginino succinate synthase [Helicobacter pylori G27] gi|208431917|gb|ACI26788.1| arginino succinate synthase [Helicobacter pylori G27] Length = 350 Score = 39.7 bits (91), Expect = 0.99, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|254457915|ref|ZP_05071342.1| exsB protein [Campylobacterales bacterium GD 1] gi|207085308|gb|EDZ62593.1| exsB protein [Campylobacterales bacterium GD 1] Length = 224 Score = 39.7 bits (91), Expect = 0.99, Method: Compositional matrix adjust. Identities = 40/205 (19%), Positives = 85/205 (41%), Gaps = 29/205 (14%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N ++ + + MSGG+DS++ A ++K GY++I + YN R K++ C Sbjct: 2 NEQNKKALCVMSGGMDSTLSAYMMKNSGYEIIALHFN-YNQR-TQKKELEC--------F 51 Query: 77 RRVCDTINVSH-YVFDYE--------ERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 ++C+ ++V Y+ D + ++ VP P+ V + S Sbjct: 52 HKICEDLDVKEKYILDLDFFAQIGASALTDKSIEVPIGGIEEG--VPVTYVPFRNGIFLS 109 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 +V + GA+V++ G V ++ CR + + T + + Sbjct: 110 MAAAVAEKEGANVISIG--------VVEEDSSGYPDCRESYINSMEQSINLGTKDETNIE 161 Query: 188 LRFPLGDMKKESVRDLAREMGLDIA 212 ++ PL +KK + + E+ + ++ Sbjct: 162 IKMPLVHLKKSQIVQKSLELNVPLS 186 >gi|34558197|ref|NP_908012.1| tRNA methyltransferase [Wolinella succinogenes DSM 1740] gi|34483916|emb|CAE10912.1| TRNA METHYLTRANSFERASE [Wolinella succinogenes] Length = 333 Score = 39.3 bits (90), Expect = 1.00, Method: Compositional matrix adjust. Identities = 32/131 (24%), Positives = 56/131 (42%), Gaps = 15/131 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRV 79 M+ + SGG+DS + L++ G +V+ + + A +D + + Sbjct: 1 MKALALFSGGLDSLLSMKLIQEMGIEVVALHFNI-----------GFGANRDKLEYLQNA 49 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 I V V D +E+F N V+ F + G+ PC+DC+ + F L + GA Sbjct: 50 TAQIGVELRVLDIQEQFFNEVL--FNPVHGYGKYFNPCIDCHANM-FRHALRLLEGEGAS 106 Query: 140 VLATGHYIRSR 150 + +G I R Sbjct: 107 FIISGEVIGQR 117 >gi|190893772|ref|YP_001980314.1| argininosuccinate synthase protein [Rhizobium etli CIAT 652] gi|190699051|gb|ACE93136.1| argininosuccinate synthase protein [Rhizobium etli CIAT 652] gi|327188860|gb|EGE56052.1| argininosuccinate synthase protein [Rhizobium etli CNPAF512] Length = 407 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 16/126 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+A SGG+D+S++ L+ + G +V+ T L G+++ AR+ Sbjct: 9 KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 55 Query: 81 DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + Y+ D E F + P + A E L R + L+ + R+ GA Sbjct: 56 EMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIARKTGA 115 Query: 139 DVLATG 144 D +A G Sbjct: 116 DAIAHG 121 >gi|317176819|dbj|BAJ54608.1| argininosuccinate synthase [Helicobacter pylori F16] Length = 350 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|317121384|ref|YP_004101387.1| argininosuccinate synthase [Thermaerobacter marianensis DSM 12885] gi|315591364|gb|ADU50660.1| argininosuccinate synthase [Thermaerobacter marianensis DSM 12885] Length = 437 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 18/127 (14%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRV 79 ++V+A SGG+D+SV LK GYDVI ++ G+D+ + R+ Sbjct: 4 KIVLAYSGGLDTSVAIPWLKETYGYDVIALS-------------ADVGEGKDLDFIRRKA 50 Query: 80 CDTINVSHYVFDYEERFRNAVIVPF--ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 V V D ERF ++P A++ G PL +R + L+ RQ G Sbjct: 51 LQVGAVEAVVVDARERFARDFVLPALQANALYQGRYPL-SAALSRPLIAQLLVETARQYG 109 Query: 138 ADVLATG 144 A +A G Sbjct: 110 ATAVAHG 116 >gi|304310384|ref|YP_003809982.1| predicted thiamine biosynthesis protein [gamma proteobacterium HdN1] gi|301796117|emb|CBL44322.1| predicted thiamine biosynthesis protein [gamma proteobacterium HdN1] Length = 354 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 35/143 (24%), Positives = 61/143 (42%), Gaps = 23/143 (16%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTL--------QLYNSRKASKRKGSCCAGQDV 73 + + +SGG+DS + ++ G V GV + RK + K Q Sbjct: 6 KAIALVSGGLDSMLAVRAMQEQGIHVEGVNFFTGFCVEGHTHAIRKQDQEK------QKR 59 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV--KFSDLLS 131 +A V + + + ++ D E +++ V+ P Y G PC+DC + K + +L+ Sbjct: 60 NNALWVAERLGIKLHIEDISEEYKDVVLNP---RYGYGAHMNPCLDCKIFMVGKANAMLN 116 Query: 132 VTRQL----GADVLATGHYIRSR 150 R+L G D + TG I R Sbjct: 117 RARELVADGGFDFIITGEVIGQR 139 >gi|297180161|gb|ADI16383.1| argininosuccinate synthase [uncultured bacterium HF130_12L15] Length = 408 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 58/129 (44%), Gaps = 21/129 (16%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD---AR 77 +VV+A SGG+D+S++ L+ + G +V+ T L GQ V D AR Sbjct: 9 KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL---------------GQGVDDLEPAR 53 Query: 78 RVCDTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQ 135 R + + YV D E F + + P + A E T L R + L+ + R+ Sbjct: 54 RKAEMMGAKEIYVEDVREEFVSDFVFPMFRANAVYEGTYLLGTSIARPLISKHLVDIARE 113 Query: 136 LGADVLATG 144 GAD +A G Sbjct: 114 TGADAVAHG 122 >gi|18976645|ref|NP_578002.1| n-type ATP pyrophosphatase superfamily protein [Pyrococcus furiosus DSM 3638] gi|18892216|gb|AAL80397.1| n-type ATP pyrophosphatase superfamily [Pyrococcus furiosus DSM 3638] Length = 283 Score = 39.3 bits (90), Expect = 1.0, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 58/130 (44%), Gaps = 23/130 (17%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD R++VA+SGG DS+V A +LK+ GY + + L L + K ++Y A++ Sbjct: 28 KDERILVAVSGGKDSAVTAYVLKKLGYKIECLHLNLGIGEYSEK--------SEIY-AKK 78 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGE--TPLP-CVDCNRTVKFSDLLSVTRQ 135 C+ I N + V Y GE T P C C T ++ + Sbjct: 79 QCEFIGAP----------LNIIRVKELLGYGIGEVRTSRPTCSYCGLTKRYI-MNKFAYD 127 Query: 136 LGADVLATGH 145 G D +ATGH Sbjct: 128 NGFDAVATGH 137 >gi|163784843|ref|ZP_02179624.1| hypothetical protein HG1285_07966 [Hydrogenivirga sp. 128-5-R1-1] gi|159879890|gb|EDP73613.1| hypothetical protein HG1285_07966 [Hydrogenivirga sp. 128-5-R1-1] Length = 341 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 54/134 (40%), Gaps = 11/134 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS---RKASKRKGSCCAGQDVY--DA 76 + V SGG+DS++ L++ G +VI L Y + +R+G Y A Sbjct: 4 KAVALYSGGLDSTLAIKLIQEQGIEVI--ALHFYTGFCITETKRRRGEKKEDGSHYMNPA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + S + D E + + + P Y G PC+DC R + ++ Sbjct: 62 LKYAAKYGFSLEIIDISEGYFDIIQNP---KYGYGSNINPCIDC-RAYMYKHAKKYMEEI 117 Query: 137 GADVLATGHYIRSR 150 GAD + +G + R Sbjct: 118 GADFIISGEVLNQR 131 >gi|170755404|ref|YP_001779793.1| hypothetical protein CLD_0620 [Clostridium botulinum B1 str. Okra] gi|169120616|gb|ACA44452.1| conserved hypothetical protein [Clostridium botulinum B1 str. Okra] Length = 240 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 29/131 (22%) Query: 22 RVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 ++ V +SGG DS V+ LLK+ + +D+I +TL G D Sbjct: 23 KIAVGLSGGKDSVVLLHLLKKYQSFSPEKFDLIAITLDTM-------------TGADFSP 69 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 VC INV Y+ Y+ + V + + PC C ++ L + +++ Sbjct: 70 LENVCSNINVPLYI--YKTPIKEIV-------FDLRKEKNPCSLC-ANLRRGALNNYSKE 119 Query: 136 LGADVLATGHY 146 LG + +A GH+ Sbjct: 120 LGCNKIALGHH 130 >gi|322418448|ref|YP_004197671.1| NAD+ synthetase [Geobacter sp. M18] gi|320124835|gb|ADW12395.1| NAD+ synthetase [Geobacter sp. M18] Length = 329 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 100/233 (42%), Gaps = 32/233 (13%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 K R+VVA+SGG+DSSV AAL R VIG+ + +S + + AG + Sbjct: 36 KRGRIVVALSGGIDSSVTAALSVRALGSSRVIGLEMPERHSARETLALSGKVAGSLGIET 95 Query: 77 RRVCDTINVSHYVFDYEERFRNAV--IVPFASSYAAGETPLPCVDCNR-TVKFSDLLSVT 133 RV D V V Y E++ NAV +VP +Y G T + +F+ VT Sbjct: 96 -RVEDISGVLQSVGFY-EKYDNAVRSVVP---AYGEGWTSKIVISGGADKPRFTSFYLVT 150 Query: 134 RQLGA-------------DVLATGHY---IRSRL-YVGDDGKRRRIMCRPMDLERDQSYF 176 R A +++A ++ IR L Y D + P LE DQ +F Sbjct: 151 RDADAVQSTVRLPLQPYLEIVAATNFKQRIRKMLEYYYADRLNFAVAGTPNRLEYDQGFF 210 Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGL--DIADKSDSQDICFVQQGK 227 + D++ P+ + K V LA +G+ +I + + D + QG+ Sbjct: 211 V--KLGDGAADIK-PIAHLYKSQVYQLAEFLGIPEEIRSRKPTTDTYSLAQGQ 260 >gi|217031756|ref|ZP_03437260.1| hypothetical protein HPB128_155g69 [Helicobacter pylori B128] gi|216946603|gb|EEC25203.1| hypothetical protein HPB128_155g69 [Helicobacter pylori B128] Length = 191 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|153940664|ref|YP_001389528.1| hypothetical protein CLI_0220 [Clostridium botulinum F str. Langeland] gi|152936560|gb|ABS42058.1| conserved hypothetical protein [Clostridium botulinum F str. Langeland] gi|295317628|gb|ADF98005.1| conserved hypothetical protein [Clostridium botulinum F str. 230613] Length = 240 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 29/131 (22%) Query: 22 RVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 ++ V +SGG DS V+ LLK+ + +D+I +TL G D Sbjct: 23 KIAVGLSGGKDSVVLLHLLKKYQSFSPEKFDLIAITLDTM-------------TGADFSP 69 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 VC INV Y+ Y+ + V + + PC C ++ L + +++ Sbjct: 70 LENVCSNINVPLYI--YKTPIKEIV-------FDLRKEKNPCSLC-ANLRRGALNNYSKE 119 Query: 136 LGADVLATGHY 146 LG + +A GH+ Sbjct: 120 LGCNKIALGHH 130 >gi|317013437|gb|ADU80873.1| hypothetical protein HPGAM_00065 [Helicobacter pylori Gambia94/24] Length = 350 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KQIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|170758613|ref|YP_001785494.1| hypothetical protein CLK_3340 [Clostridium botulinum A3 str. Loch Maree] gi|169405602|gb|ACA54013.1| conserved hypothetical protein [Clostridium botulinum A3 str. Loch Maree] Length = 240 Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 29/131 (22%) Query: 22 RVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 ++ V +SGG DS V+ LLK+ + +D+I +TL G D Sbjct: 23 KIAVGLSGGKDSIVLLHLLKKYQSFSPEKFDLIAITLDTM-------------TGADFSP 69 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 VC INV Y+ Y+ + V + + PC C ++ L + +++ Sbjct: 70 LENVCSNINVPLYI--YKTPIKEIV-------FDLRKEKNPCSLC-ANLRRGALNNYSKE 119 Query: 136 LGADVLATGHY 146 LG + +A GH+ Sbjct: 120 LGCNKIALGHH 130 >gi|307636697|gb|ADN79147.1| tRNA-5-methylaminomethyl-2-thiouridylate-methyltransferase [Helicobacter pylori 908] Length = 350 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KQIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|254490475|ref|ZP_05103661.1| tRNA methyl transferase [Methylophaga thiooxidans DMS010] gi|224464219|gb|EEF80482.1| tRNA methyl transferase [Methylophaga thiooxydans DMS010] Length = 350 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 32/142 (22%), Positives = 60/142 (42%), Gaps = 19/142 (13%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL--------QLYNSRKASKRKGSCCAG 70 + + V +SGG+DS + +L+ G +V G+ + R K K Sbjct: 3 RQHKAVALISGGLDSMLAVRVLQEQGIEVEGINFYTGFCVEGHTHAIRNHDKDK------ 56 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV--KFSD 128 Q +A V + +++ ++ D E +++ ++ P + G PC+DC + K + Sbjct: 57 QKRNNALWVAEQLDIKLHIVDVIEEYKDVLLNP---KHGYGANMNPCLDCKIFMVGKAVE 113 Query: 129 LLSVTRQLGADVLATGHYIRSR 150 + Q G D + TG I R Sbjct: 114 WVKEHHQDGFDFIVTGEVIGQR 135 >gi|168177499|ref|ZP_02612163.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] gi|168182225|ref|ZP_02616889.1| conserved hypothetical protein [Clostridium botulinum Bf] gi|226947389|ref|YP_002802480.1| hypothetical protein CLM_0209 [Clostridium botulinum A2 str. Kyoto] gi|237793484|ref|YP_002861036.1| hypothetical protein CLJ_B0204 [Clostridium botulinum Ba4 str. 657] gi|182671105|gb|EDT83079.1| conserved hypothetical protein [Clostridium botulinum NCTC 2916] gi|182674626|gb|EDT86587.1| conserved hypothetical protein [Clostridium botulinum Bf] gi|226842841|gb|ACO85507.1| conserved hypothetical protein [Clostridium botulinum A2 str. Kyoto] gi|229261836|gb|ACQ52869.1| conserved hypothetical protein [Clostridium botulinum Ba4 str. 657] Length = 240 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 29/131 (22%) Query: 22 RVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 ++ V +SGG DS V+ LLK+ + +D+I +TL G D Sbjct: 23 KIAVGLSGGKDSIVLLHLLKKYQSFSPEKFDLIAITLDTM-------------TGADFSP 69 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 VC INV Y+ Y+ + V + + PC C ++ L + +++ Sbjct: 70 LENVCSNINVPLYI--YKTPIKEIV-------FDLRKEKNPCSLC-ANLRRGALNNYSKE 119 Query: 136 LGADVLATGHY 146 LG + +A GH+ Sbjct: 120 LGCNKIALGHH 130 >gi|52550452|gb|AAU84301.1| argininosuccinate synthase [uncultured archaeon GZfos9D1] Length = 388 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 39/128 (30%), Positives = 59/128 (46%), Gaps = 20/128 (15%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTL---QLYNSRKASKRKGSCCAGQDVYDA 76 +VV+A SGG+D+SV LLK GYD VI VT+ Q + K +K +G+ Sbjct: 3 KVVLAYSGGLDTSVCIPLLKEHYGYDNVIAVTVDVGQPEDDIKEAKERGA---------- 52 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++CD S+ D +E F I P + E + R + ++ V R+ Sbjct: 53 -KLCD----SYREIDAKEEFVRDYIFPLIKANGNYEGYVLGTAIARPLIAKHVVEVAREE 107 Query: 137 GADVLATG 144 AD +A G Sbjct: 108 NADAVAHG 115 >gi|289548315|ref|YP_003473303.1| argininosuccinate synthase [Thermocrinis albus DSM 14484] gi|289181932|gb|ADC89176.1| argininosuccinate synthase [Thermocrinis albus DSM 14484] Length = 398 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 15/125 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD-ARRVC 80 RV++A SGG+D+SV+ L GY+VI T G+++ + ++ Sbjct: 4 RVILAYSGGLDTSVIVRWLTERGYEVITYT-------------ADVGQGEELSEIPQKAK 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP-CVDCNRTVKFSDLLSVTRQLGAD 139 D+ V V D +E F +P + A E P +R + S L+ ++L A Sbjct: 51 DSGAVEAIVEDLKEEFARNYCLPTLRALALYEGKYPLTASLSRPLIASKLVEYAQKLSAH 110 Query: 140 VLATG 144 +A G Sbjct: 111 YVAHG 115 >gi|325995283|gb|ADZ50688.1| tRNA-5-methylaminomethyl-2-thiouridylate-methyltransferase [Helicobacter pylori 2018] Length = 350 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KQIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|308174628|ref|YP_003921333.1| argininosuccinate synthase [Bacillus amyloliquefaciens DSM 7] gi|307607492|emb|CBI43863.1| argininosuccinate synthase [Bacillus amyloliquefaciens DSM 7] gi|328554554|gb|AEB25046.1| argininosuccinate synthase [Bacillus amyloliquefaciens TA208] gi|328912958|gb|AEB64554.1| argininosuccinate synthase [Bacillus amyloliquefaciens LL3] Length = 403 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 25/130 (19%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDV-YDA 76 +VV+A SGG+D+SV L+ GYDV+ +CC G+D+ + Sbjct: 6 KVVLAYSGGLDTSVAIKWLQEQGYDVV-----------------ACCLDVGEGKDLAFVQ 48 Query: 77 RRVCDTINVSHYVFDYEERF--RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 ++ + V+ YV D +E F A+I A + G+ PL +R + L+ V Sbjct: 49 QKALEVGAVNSYVIDAKEEFAREYALISMQAHTMYEGKYPLVSA-LSRPLIAKKLVEVAE 107 Query: 135 QLGADVLATG 144 + A +A G Sbjct: 108 KENAVAVAHG 117 >gi|322804435|emb|CBZ01985.1| tRNA(Cytosine32)-2-thiocytidine synthetase [Clostridium botulinum H04402 065] Length = 240 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 29/131 (22%) Query: 22 RVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 ++ V +SGG DS V+ LLK+ + +D+I +TL G D Sbjct: 23 KIAVGLSGGKDSIVLLHLLKKYQSFSPEKFDLIAITLDTM-------------TGADFSP 69 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 VC INV Y+ Y+ + V + + PC C ++ L + +++ Sbjct: 70 LENVCSNINVPLYI--YKTPIKEIV-------FDLRKEKNPCSLC-ANLRRGALNNYSKE 119 Query: 136 LGADVLATGHY 146 LG + +A GH+ Sbjct: 120 LGCNKIALGHH 130 >gi|320531700|ref|ZP_08032639.1| argininosuccinate synthase [Actinomyces sp. oral taxon 171 str. F0337] gi|320136080|gb|EFW28089.1| argininosuccinate synthase [Actinomyces sp. oral taxon 171 str. F0337] Length = 407 Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 15/126 (11%) Query: 22 RVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79 RVV+A SGG+D+SV + + G +V+ V + + G+D+ R R Sbjct: 7 RVVLAYSGGLDTSVAIGWIGEATGREVVAVAVDVGQ------------GGEDLEVIRQRA 54 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138 D V YV D + F N +P + A E P V +R V L+ R+ GA Sbjct: 55 LDCGAVEAYVTDARDEFANDYCMPALKANALYEGTYPLVSALSRPVIARHLVKAAREFGA 114 Query: 139 DVLATG 144 +A G Sbjct: 115 HTVAHG 120 >gi|146304252|ref|YP_001191568.1| PP-loop domain-containing protein [Metallosphaera sedula DSM 5348] gi|145702502|gb|ABP95644.1| PP-loop domain protein [Metallosphaera sedula DSM 5348] Length = 318 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 16/128 (12%) Query: 22 RVVVAMSGGVDSS----VVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 RV VA+SGG DS+ V+A L + G++V+G+ + L R G+ + A Sbjct: 49 RVAVAVSGGKDSTTLLHVLAKLSGKMGFEVVGINIDLGIDR------GTKYSSLSTEFAV 102 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + + + V + V +E+ F A + P VK L ++LG Sbjct: 103 KNFEKLGVEYKVVSLKEKH------GFTIDEAKVKIKRPVCSTCGLVKRYVLEEAAQELG 156 Query: 138 ADVLATGH 145 ADVLATGH Sbjct: 157 ADVLATGH 164 >gi|325295219|ref|YP_004281733.1| Argininosuccinate synthase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065667|gb|ADY73674.1| Argininosuccinate synthase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 402 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 25/130 (19%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTL------QLYNSRKASKRKGSCCAGQDVYD 75 RVV+A SGG+D+SV+ L G++VI T +L + +K+ G+ A D Sbjct: 4 RVVLAYSGGLDTSVIVRWLADRGFEVITYTADVGQGEELGEIEEKAKKAGAVEAIID--- 60 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTR 134 D +E F +P + A E P + +R + L+ V Sbjct: 61 ---------------DIKEEFAREYCLPLMRAGALYEGKYPLLSALSRPLIAKKLVEVAH 105 Query: 135 QLGADVLATG 144 Q GAD +A G Sbjct: 106 QKGADYVAHG 115 >gi|210134212|ref|YP_002300651.1| argininosuccinate synthase [Helicobacter pylori P12] gi|210132180|gb|ACJ07171.1| argininosuccinate synthase [Helicobacter pylori P12] Length = 350 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|301063542|ref|ZP_07204068.1| protein ExsB [delta proteobacterium NaphS2] gi|300442351|gb|EFK06590.1| protein ExsB [delta proteobacterium NaphS2] Length = 228 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 20/126 (15%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 + VV +SGG+DS+ VAA+ +GYDV +T + Y R A + K A +V Sbjct: 7 KAVVLLSGGLDSTTVAAIACSEGYDVFALTFR-YGQRHAVELKA----------AEKVAH 55 Query: 82 TINVS-HYVFDYEER------FRNAVIVPF--ASSYAAGETPLPCVDCNRTVKFSDLLSV 132 + ++ H + D + R + + VP + + E P+ V T+ S L+ Sbjct: 56 NLGLTEHLIVDLDLRKIGGSALTDHIDVPKRRGAELSEEEIPVTYVPARNTIFLSYALAW 115 Query: 133 TRQLGA 138 LGA Sbjct: 116 AEVLGA 121 >gi|298737103|ref|YP_003729633.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori B8] gi|298356297|emb|CBI67169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori B8] Length = 350 Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|297569716|ref|YP_003691060.1| NAD+ synthetase [Desulfurivibrio alkaliphilus AHT2] gi|296925631|gb|ADH86441.1| NAD+ synthetase [Desulfurivibrio alkaliphilus AHT2] Length = 336 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 67/273 (24%), Positives = 106/273 (38%), Gaps = 57/273 (20%) Query: 19 KDMR---VVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 +D+R VVVA+SGGVDSSV AAL R V G+ L +S S ++G Sbjct: 32 RDLRRRGVVVALSGGVDSSVCAALAVRALGAGKVYGLMLPERDSSPLSLKRG-------- 83 Query: 74 YDARRVCDTINVSHYVFDYEERF--------RNAVIVPFASSYAAGETPLPCVDCNRTVK 125 ++V D + + + V D R+ I Y G + R Sbjct: 84 ---KQVADCLGIDYLVEDIGPTLDSLGCYLRRDEAIRRLFPEYGPGWKSKIAIAGGRDGS 140 Query: 126 FSDLLSVTRQLGADVL--------------ATGHYIRSRL---YVGDDGKRRRIMCRPMD 168 F+ V + G ++L AT R+R Y D ++ P Sbjct: 141 FNYFNLVVQTPGGELLEKRMPPREYLQIVAATNFKQRTRKMIEYFHADRLNYAVIGTPNR 200 Query: 169 LERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGL--DIADKSDSQDICFVQQG 226 LE DQ +F+ DL+ P+ + K V LA + + +I+ + + D ++QG Sbjct: 201 LEYDQGFFV--KNGDGAADLK-PIAHLYKTQVYALASHLRIPEEISSAAPTTDTYSLEQG 257 Query: 227 K---YFDV--------VKRINAGIALEGDIVHL 248 + YF + + N G++ E HL Sbjct: 258 QDEFYFSLSYDKMDVALWSFNHGVSEEALASHL 290 >gi|325067193|ref|ZP_08125866.1| argininosuccinate synthase [Actinomyces oris K20] Length = 407 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 15/126 (11%) Query: 22 RVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79 RVV+A SGG+D+SV + + G +V+ V + + G+D+ R R Sbjct: 7 RVVLAYSGGLDTSVAIGWIGEATGREVVAVAVDVGQ------------GGEDLEVIRQRA 54 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138 D V YV D + F N +P + A E P V +R V L+ R+ GA Sbjct: 55 LDCGAVEAYVADARDEFANDYCMPALKANALYEGTYPLVSALSRPVIARHLVKAAREFGA 114 Query: 139 DVLATG 144 +A G Sbjct: 115 HTVAHG 120 >gi|323488963|ref|ZP_08094200.1| argininosuccinate synthase [Planococcus donghaensis MPA1U2] gi|323397355|gb|EGA90164.1| argininosuccinate synthase [Planococcus donghaensis MPA1U2] Length = 410 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 17/126 (13%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVC 80 ++V+A SGG+D+SV LK +GYDV+ V L + G+D+ + ++ Sbjct: 4 KIVLAYSGGLDTSVAIPWLKGEGYDVVAVCLDI-------------GEGKDLDFIKQKAL 50 Query: 81 DTINVSHYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V Y+ D + F + A+I A + G+ PL +R + L+ + G+ Sbjct: 51 QVGAVESYMIDARDEFADEYALISMQAHTLYEGKYPL-VSALSRPLISKKLVEIAEATGS 109 Query: 139 DVLATG 144 +A G Sbjct: 110 SAVAHG 115 >gi|154687066|ref|YP_001422227.1| argininosuccinate synthase [Bacillus amyloliquefaciens FZB42] gi|166219946|sp|A7Z7M0|ASSY_BACA2 RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|154352917|gb|ABS74996.1| ArgG [Bacillus amyloliquefaciens FZB42] Length = 403 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 25/130 (19%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDV-YDA 76 +VV+A SGG+D+SV L+ GYDV+ +CC G+D+ + Sbjct: 6 KVVLAYSGGLDTSVAIKWLQEQGYDVV-----------------ACCLDVGEGKDLAFVQ 48 Query: 77 RRVCDTINVSHYVFDYEERF--RNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 ++ + V+ YV D +E F A+I A + G+ PL +R + L+ V Sbjct: 49 QKALEVGAVNSYVIDAKEEFAREYALISMQAHTMYEGKYPLVSA-LSRPLIAKKLVEVAE 107 Query: 135 QLGADVLATG 144 + A +A G Sbjct: 108 KENAVAVAHG 117 >gi|148378171|ref|YP_001252712.1| hypothetical protein CBO0165 [Clostridium botulinum A str. ATCC 3502] gi|153931125|ref|YP_001382571.1| hypothetical protein CLB_0202 [Clostridium botulinum A str. ATCC 19397] gi|153937579|ref|YP_001386124.1| hypothetical protein CLC_0213 [Clostridium botulinum A str. Hall] gi|148287655|emb|CAL81720.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] gi|152927169|gb|ABS32669.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 19397] gi|152933493|gb|ABS38992.1| conserved hypothetical protein [Clostridium botulinum A str. Hall] Length = 240 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 33/131 (25%), Positives = 56/131 (42%), Gaps = 29/131 (22%) Query: 22 RVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 ++ V +SGG DS V+ LLK+ + +D+I +TL G D Sbjct: 23 KIAVGLSGGKDSIVLLHLLKKYQSFSPEKFDLIAITLDTM-------------TGADFSP 69 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 VC INV Y+ Y+ + V + + PC C ++ L + +++ Sbjct: 70 LENVCSNINVPLYI--YKTPIKEIV-------FDLRKEKNPCSLC-ANLRRGALNNYSKK 119 Query: 136 LGADVLATGHY 146 LG + +A GH+ Sbjct: 120 LGCNKIALGHH 130 >gi|237756601|ref|ZP_04585118.1| thiamine biosynthesis protein [Sulfurihydrogenibium yellowstonense SS-5] gi|237691232|gb|EEP60323.1| thiamine biosynthesis protein [Sulfurihydrogenibium yellowstonense SS-5] Length = 355 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 51/251 (20%), Positives = 99/251 (39%), Gaps = 27/251 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS---RKASKRKGSCCAGQDVY--DA 76 + V SGG+DS++ L++ G DV+ L Y + +R+G Y A Sbjct: 4 KAVALYSGGLDSTLAIKLVQNQGIDVL--ALHFYTGFCITETKRRRGEKKEDGSHYINPA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + + D + + + ++ P + G PC+DC R F + +++ Sbjct: 62 LKFAAKYGFPLEIVDISDGYMDVILNP---KFGYGANINPCIDC-RIYMFKKAKEIMQEV 117 Query: 137 GADVLATGHYIRSRL---------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 GAD + +G + R + + ++ RP+ ++ Sbjct: 118 GADFVISGEVLGQRPKSQKSIPLKIIEREAGLEGLILRPLSAKKLPPTIPEINGWVDREK 177 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 L +G +K + +LA+E+G+D + S + C++ Y + +A+EG I Sbjct: 178 LEGIVGRSRKRQI-ELAKELGIDEYE-SPAGGCCYLTDENY---AYKYKETMAVEGKITQ 232 Query: 248 --LNGQILGRH 256 L +GRH Sbjct: 233 EDLVLFTVGRH 243 >gi|326771631|ref|ZP_08230916.1| argininosuccinate synthase [Actinomyces viscosus C505] gi|326637764|gb|EGE38665.1| argininosuccinate synthase [Actinomyces viscosus C505] Length = 410 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 15/126 (11%) Query: 22 RVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79 RVV+A SGG+D+SV + + G +V+ V + + G+D+ R R Sbjct: 10 RVVLAYSGGLDTSVAIGWIGEATGREVVAVAVDVGQ------------GGEDLEVIRQRA 57 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138 D V YV D + F N +P + A E P V +R V L+ R+ GA Sbjct: 58 LDCGAVEAYVADARDEFANDYCMPALKANALYEGTYPLVSALSRPVIARHLVKAAREFGA 117 Query: 139 DVLATG 144 +A G Sbjct: 118 HTVAHG 123 >gi|317010295|gb|ADU84042.1| tRNA methyltransferase [Helicobacter pylori SouthAfrica7] Length = 350 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|315604497|ref|ZP_07879561.1| argininosuccinate synthase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313781|gb|EFU61834.1| argininosuccinate synthase [Actinomyces sp. oral taxon 180 str. F0310] Length = 406 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 15/126 (11%) Query: 22 RVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79 RVV+A SGG+D+SV + ++ G +V+ V + + G+D+ R R Sbjct: 6 RVVLAYSGGLDTSVAIGWIGEQTGREVVAVAVDVGQ------------GGEDLEVIRQRA 53 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138 D V YV D + F + +P + A E P V +R V L+ R+ GA Sbjct: 54 LDCGAVEAYVADARDEFASEYCMPALKANALYEGKYPLVSALSRPVIVKHLVKAAREFGA 113 Query: 139 DVLATG 144 +A G Sbjct: 114 TTVAHG 119 >gi|315452550|ref|YP_004072820.1| Arginino succinate synthase [Helicobacter felis ATCC 49179] gi|315131602|emb|CBY82230.1| Arginino succinate synthase [Helicobacter felis ATCC 49179] Length = 352 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 32/130 (24%), Positives = 54/130 (41%), Gaps = 13/130 (10%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+ + SGG+DS + L+ G +VI + + KR+ A V +C Sbjct: 1 MKALALFSGGLDSLLSMHLVASQGIEVIALHFNIGFGGNKDKREYLEKASAQVGAQLLLC 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D +E+F + V+ F Y G+ PC+DC+ + F +L AD Sbjct: 61 DI----------QEQFFDEVL--FKPKYGYGKYFNPCIDCHANM-FRQAFYKLLELQADF 107 Query: 141 LATGHYIRSR 150 + +G + R Sbjct: 108 VISGEVLGQR 117 >gi|167042206|gb|ABZ06938.1| putative tRNA methyl transferase [uncultured marine crenarchaeote HF4000_ANIW93I24] Length = 268 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 80/195 (41%), Gaps = 47/195 (24%) Query: 23 VVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 V+VA+SGGVDS++VA + + G I VT A +++ A+++ Sbjct: 19 VLVALSGGVDSALVAYSAYAKLGKSAISVTADY-----------KTLAQEELEYAKKISL 67 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + H V +Y E A+ C C R+ LL V ++ D++ Sbjct: 68 EIGIKHIVIEYNE---------LANESFVKNDNNRCFYC-RSELSEHLLQVAKEFETDMI 117 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK--KES 199 G I +GD RP L Q+ +R PL + K K+ Sbjct: 118 VDGTNIDD---LGD--------YRPGILALHQN------------GIRSPLAETKFSKKM 154 Query: 200 VRDLAREMGLDIADK 214 VR++A+ +GL + DK Sbjct: 155 VREVAKNVGLSVYDK 169 >gi|56421292|ref|YP_148610.1| argininosuccinate synthase [Geobacillus kaustophilus HTA426] gi|61211378|sp|Q5KW94|ASSY_GEOKA RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|56381134|dbj|BAD77042.1| argininosuccinate synthase(citrulline--aspartate ligase) [Geobacillus kaustophilus HTA426] Length = 406 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 20/131 (15%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YD 75 NPK +V+A SGG+D+SV L+ GYDVI L L G+D+ + Sbjct: 3 NPK---LVLAYSGGLDTSVAIKWLQERGYDVIACCLDL-------------GEGKDLDFV 46 Query: 76 ARRVCDTINVSHYVFDYEERFRN--AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 + + YV D ++ F N A+I A++ G+ PL +R + L+ + Sbjct: 47 KEKALKVGAMKSYVIDVKDEFANEYALIALQANALYEGKYPL-VSALSRPLIAKKLVEIA 105 Query: 134 RQLGADVLATG 144 GA +A G Sbjct: 106 ELEGAVAVAHG 116 >gi|240102429|ref|YP_002958738.1| PP-loop ATPase, MJ1638-related [Thermococcus gammatolerans EJ3] gi|239909983|gb|ACS32874.1| PP-loop ATPase, MJ1638-related [Thermococcus gammatolerans EJ3] Length = 245 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 57/140 (40%), Gaps = 27/140 (19%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72 D +K P +RV +A S G DS+ +L+ G++V+ +T +L D Sbjct: 48 DFEKTPTGVRVALAFSAGSDSTATLKILRWAGFEVVPITAKLPQ--------------MD 93 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP-CVDCNRTVKFSDLLS 131 ++V ++ V YEE R + E P C C+ V + Sbjct: 94 ERTLQKVRSENSIFVVVPRYEETMRELI-----------EKGAPICGRCHSMV-MEAVER 141 Query: 132 VTRQLGADVLATGHYIRSRL 151 R+LG +LATG + S L Sbjct: 142 KARELGVRILATGDMLSSGL 161 >gi|167628090|ref|YP_001678590.1| hypothetical protein Fphi_1863 [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167598091|gb|ABZ88089.1| conserved hypothetical protein [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 421 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 31/140 (22%), Positives = 56/140 (40%), Gaps = 18/140 (12%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL--------QLYNSRKASKRKGSCCAG 70 K ++ V +SGG+DS + ++ G V G+ + RK K K Sbjct: 4 KQVKAVSLISGGLDSMLATKMMLEQGIHVEGINFFTGFCVEGHTHAIRKQDKEK------ 57 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 Q ++ V + + + ++ D E +++ ++ P Y G PC+DC + Sbjct: 58 QKRNNSLWVAEQLGIKLHIIDVIEEYKDVLLNP---KYGYGANMNPCLDC-KIFMVRKAK 113 Query: 131 SVTRQLGADVLATGHYIRSR 150 + G D + TG I R Sbjct: 114 EWAEENGFDFIITGEVIGQR 133 >gi|261837468|gb|ACX97234.1| hypothetical protein KHP_0011 [Helicobacter pylori 51] Length = 350 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KKIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|18976579|ref|NP_577936.1| argininosuccinate synthase [Pyrococcus furiosus DSM 3638] gi|24211504|sp|Q8U484|ASSY_PYRFU RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|18892142|gb|AAL80331.1| argininosuccinate synthase [Pyrococcus furiosus DSM 3638] Length = 410 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 14/126 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 MR+V+A SGG+D+SV+ L++ G +VI VT+ + K + + Sbjct: 1 MRIVLAYSGGLDTSVILKLMQEKLGAEVITVTVDVGQKDDFEKIE------------EKA 48 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLP-CVDCNRTVKFSDLLSVTRQLGA 138 V HY D +E F + + A E P R + L+ V ++ GA Sbjct: 49 YKFGAVKHYYIDAKEEFAENYVCKAIKANALYENAYPLSTALARPLIVEKLVEVAKKEGA 108 Query: 139 DVLATG 144 ++A G Sbjct: 109 GIIAHG 114 >gi|329944484|ref|ZP_08292649.1| argininosuccinate synthase [Actinomyces sp. oral taxon 170 str. F0386] gi|328530249|gb|EGF57128.1| argininosuccinate synthase [Actinomyces sp. oral taxon 170 str. F0386] Length = 407 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 15/126 (11%) Query: 22 RVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79 RVV+A SGG+D+SV + + G +V+ V + + G+D+ R R Sbjct: 7 RVVLAYSGGLDTSVAIGWIGEATGREVVAVAVDVGQ------------GGEDLEVIRQRA 54 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138 D V YV D + F N +P + A E P V +R V L+ R+ GA Sbjct: 55 LDCGAVEAYVADARDEFANDYCMPALKANALYEGTYPLVSALSRPVIARHLVKAAREFGA 114 Query: 139 DVLATG 144 +A G Sbjct: 115 HTVAHG 120 >gi|210620567|ref|ZP_03292115.1| hypothetical protein CLOHIR_00058 [Clostridium hiranonis DSM 13275] gi|210155281|gb|EEA86287.1| hypothetical protein CLOHIR_00058 [Clostridium hiranonis DSM 13275] Length = 430 Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 9/77 (11%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D +V++A+SGGVDSSVVAALL + IG L + RKG + +++ + Sbjct: 135 DKKVLLALSGGVDSSVVAALLIK----AIGKQLVCVHVNHGLMRKGESESVVEIFKNQMD 190 Query: 80 CDTINVSHYVFDYEERF 96 + I V D EERF Sbjct: 191 ANLIYV-----DAEERF 202 >gi|261838884|gb|ACX98649.1| argininosuccinate synthase [Helicobacter pylori 52] Length = 350 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KKIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|317181301|dbj|BAJ59085.1| argininosuccinate synthase [Helicobacter pylori F57] Length = 350 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KKIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|313899439|ref|ZP_07832949.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein [Clostridium sp. HGF2] gi|312955727|gb|EFR37385.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein [Clostridium sp. HGF2] Length = 430 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 30/78 (38%), Positives = 41/78 (52%), Gaps = 9/78 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD +V++A+SGGVDSSVVAALL + IG L + RKG + +V+ + Sbjct: 134 KDRKVLLALSGGVDSSVVAALLLK----AIGKQLYCVHVNHGLMRKGESESVIEVFKNQM 189 Query: 79 VCDTINVSHYVFDYEERF 96 + I V D ERF Sbjct: 190 DANLIYV-----DASERF 202 >gi|308182199|ref|YP_003926326.1| hypothetical protein HPPC_00065 [Helicobacter pylori PeCan4] gi|308064384|gb|ADO06276.1| hypothetical protein HPPC_00065 [Helicobacter pylori PeCan4] Length = 350 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KKIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|317008691|gb|ADU79271.1| hypothetical protein HPIN_00055 [Helicobacter pylori India7] Length = 350 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KPIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELDA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|315586002|gb|ADU40383.1| tRNA methyltransferase [Helicobacter pylori 35A] Length = 350 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KKIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|237738366|ref|ZP_04568847.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium mortiferum ATCC 9817] gi|229420246|gb|EEO35293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium mortiferum ATCC 9817] Length = 333 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 16/132 (12%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K R + SGG+DS++ ++K G DVI + S G A + Sbjct: 3 KKRRALALFSGGLDSALAIKVIKDQGIDVIALNFV------------SHFFGGKNEKAEK 50 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + +E+R V P Y G+ PC+DC+ ++ F + + A Sbjct: 51 MAEQLGIKVEYVHFEKRHTEVVKNPV---YGRGKNMNPCIDCH-SLMFKVAGELLEKYDA 106 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 107 DFVISGEVLGQR 118 >gi|257783999|ref|YP_003179216.1| GMP synthase, large subunit [Atopobium parvulum DSM 20469] gi|257472506|gb|ACV50625.1| GMP synthase, large subunit [Atopobium parvulum DSM 20469] Length = 529 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 29/75 (38%), Positives = 36/75 (48%), Gaps = 9/75 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV++A+SGGVDSSVVAAL+ R IG L RKG + V+ C Sbjct: 221 RVILALSGGVDSSVVAALVHR----AIGDQLTCVFVNHGMLRKGEPEMVEQVF-----CK 271 Query: 82 TINVSHYVFDYEERF 96 NV EER+ Sbjct: 272 QFNVPLIHVHAEERY 286 >gi|52352404|gb|AAU43693.1| argininosuccinate synthase [uncultured archaeon GZfos26D8] Length = 388 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 14/125 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +VV+A SGG+D+SV LLK GYD VI VT+ + G D+ +A+ Sbjct: 3 KVVLAYSGGLDTSVCIPLLKEHYGYDEVIAVTVDV------------GQPGDDIKEAKER 50 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 ++ S+ D +E F I P + E + R + ++ V R+ AD Sbjct: 51 GAKLSDSYREIDAKEEFVRDYIFPLIKANGNYEGYVLGTAIARPLIAKHVVEVAREEKAD 110 Query: 140 VLATG 144 +A G Sbjct: 111 AVAHG 115 >gi|73669859|ref|YP_305874.1| argininosuccinate synthase [Methanosarcina barkeri str. Fusaro] gi|119361288|sp|Q469Z8|ASSY_METBF RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|72397021|gb|AAZ71294.1| argininosuccinate synthase [Methanosarcina barkeri str. Fusaro] Length = 395 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 14/125 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +V +A SGG+D+SV +LK GYD V+ +++ + + KR DA+ Sbjct: 4 KVALAYSGGLDTSVCIPILKEKYGYDEVVTISVDVGQPEEEIKRA----------DAK-- 51 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + I+ HY D +E F + P + + E + R + ++ R+ GA Sbjct: 52 AEKISNKHYTIDAKEEFVKDYVFPLIKANGSYEGYVMGTSIARPLIAKKVVEAARKEGAV 111 Query: 140 VLATG 144 LA G Sbjct: 112 ALAHG 116 >gi|188526823|ref|YP_001909510.1| argininosuccinate synthase [Helicobacter pylori Shi470] gi|188143063|gb|ACD47480.1| argininosuccinate synthase [Helicobacter pylori Shi470] Length = 350 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KPIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|150021282|ref|YP_001306636.1| NAD synthetase [Thermosipho melanesiensis BI429] gi|149793803|gb|ABR31251.1| NAD+ synthetase [Thermosipho melanesiensis BI429] Length = 574 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 28/129 (21%), Positives = 66/129 (51%), Gaps = 20/129 (15%) Query: 22 RVVVAMSGGVDSSVVAAL----LKRDGYDVIGVTL-QLYNSRKASKRKGSCCAGQDVYDA 76 +VV+ +SGG+DSS+VAA+ L +D +V+G+ + +Y+S + DA Sbjct: 317 KVVIGLSGGMDSSLVAAIAVEALGKD--NVLGILMPSMYSS------------SHSIEDA 362 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + + + + + +Y+ E + + + ++ + + + ++ + L++++ + Sbjct: 363 KNLAENLGIKYYIIKIENIYY-SFVNELKEIFSNTKEDITEENLQARIRGTILMAISNKF 421 Query: 137 GADVLATGH 145 G VLATG+ Sbjct: 422 GHIVLATGN 430 >gi|114571455|ref|YP_758135.1| argininosuccinate synthase [Maricaulis maris MCS10] gi|119361286|sp|Q0AKJ6|ASSY_MARMM RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|114341917|gb|ABI67197.1| argininosuccinate synthase [Maricaulis maris MCS10] Length = 410 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 14/125 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV+A SGG+D+SV+ L+ D YD VT G+++ ARR + Sbjct: 9 KVVLAYSGGLDTSVILKWLQ-DAYDAEVVTFT-----------ADLGQGEELEPARRKAE 56 Query: 82 TINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGAD 139 VS ++ D E F + P + A E L R + L+ + GAD Sbjct: 57 AAGVSEIFIEDLREEFVRDFVYPMVRANAVYEGLYLLGTSIARPLIAKRLVEIAHATGAD 116 Query: 140 VLATG 144 +A G Sbjct: 117 AVAHG 121 >gi|260439257|ref|ZP_05793073.1| sensory box protein [Butyrivibrio crossotus DSM 2876] gi|292808271|gb|EFF67476.1| sensory box protein [Butyrivibrio crossotus DSM 2876] Length = 372 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 31/139 (22%), Positives = 64/139 (46%), Gaps = 31/139 (22%) Query: 215 SDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM 274 S D+CF + +D VK++ +A+EGDI+ +NG L ++ Q + + Sbjct: 216 SKDYDVCFGVENATWDGVKKVKEKVAIEGDIIKINGGTL---------SLNQLEAMLNTI 266 Query: 275 GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE----------DAVVDGF 324 PL + ++D+++ R E H+++ R + +G +F ++D F Sbjct: 267 --PLEITFVDEDNIN-----RYFNEGHKVFKRSMTAIGREVFSCHPPKVSIMVRRIIDEF 319 Query: 325 KCFVKIRSSQDPVPVFVQR 343 + S D +PV++++ Sbjct: 320 R-----NGSLDSMPVWMEK 333 >gi|330718658|ref|ZP_08313258.1| argininosuccinate synthase [Leuconostoc fallax KCTC 3537] Length = 417 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 55/129 (42%), Gaps = 17/129 (13%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++V+A SGG+D+SV LK GYDVI V L + G+D+ + Sbjct: 12 KLVLAYSGGLDTSVAIPWLKEKGYDVIAVVLDVGQH------------GKDMQMIQEKAL 59 Query: 82 TIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 T+ + V D + F + + P + E P V +R + L+ + + A Sbjct: 60 TVGAIQSIVIDAKLEFADQYVAPVIKANMLYEGEYPMVSALSRPLIIKKLVDIAHENEAT 119 Query: 140 VLA---TGH 145 +A TGH Sbjct: 120 TIAHGSTGH 128 >gi|217076557|ref|YP_002334273.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Thermosipho africanus TCF52B] gi|226695550|sp|B7IFR8|TILS_THEAB RecName: Full=tRNA(Ile)-lysidine synthase; AltName: Full=tRNA(Ile)-2-lysyl-cytidine synthase; AltName: Full=tRNA(Ile)-lysidine synthetase gi|217036410|gb|ACJ74932.1| tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) [Thermosipho africanus TCF52B] Length = 427 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 61/128 (47%), Gaps = 25/128 (19%) Query: 22 RVVVAMSGGVDSSVVAALLKR----DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 R++VA+SGGVDSSV+ LL R + + T+ + RK SK ++V Sbjct: 23 RILVAVSGGVDSSVLLNLLARVQEYFKFSIFCATVD-HGIRKESK--------EEVKFVY 73 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + ++NV ++ +++ VP A E L + R +++ L + +++ Sbjct: 74 NMAQSLNVECFIKEFD--------VPL----YAKENKLSIEEAARKLRYKFLNEIAKKIN 121 Query: 138 ADVLATGH 145 A+ +AT H Sbjct: 122 ANKVATAH 129 >gi|217034699|ref|ZP_03440102.1| hypothetical protein HP9810_880g10 [Helicobacter pylori 98-10] gi|216942839|gb|EEC22334.1| hypothetical protein HP9810_880g10 [Helicobacter pylori 98-10] Length = 350 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KKIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNIGFGGNKDKREYFENATAQIGAELL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|308062882|gb|ADO04769.1| argininosuccinate synthase [Helicobacter pylori Sat464] Length = 350 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KPIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNIGFGGNKDKREYLENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|308061316|gb|ADO03204.1| argininosuccinate synthase [Helicobacter pylori Cuz20] Length = 350 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KPIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|114288|sp|P13257|ASSY_METBA RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|149818|gb|AAA72677.1| argininosuccinate synthetase [Methanosarcina barkeri] Length = 396 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 14/125 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +V +A SGG+D+SV +LK GYD V+ +++ + + KR DA+ Sbjct: 4 KVALAYSGGLDTSVCIPILKEKYGYDEVVTISVDVGQPEEEIKRA----------DAK-- 51 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + I+ HY D +E F + P + + E + R + ++ R+ GA Sbjct: 52 AEKISNKHYTIDAKEEFVKDYVFPLIKANGSYEGYVMGTSIARPLIAKKVVEAARKEGAV 111 Query: 140 VLATG 144 LA G Sbjct: 112 ALAHG 116 >gi|330508996|ref|YP_004385424.1| argininosuccinate synthase [Methanosaeta concilii GP-6] gi|328929804|gb|AEB69606.1| argininosuccinate synthase [Methanosaeta concilii GP-6] Length = 391 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 50/197 (25%), Positives = 75/197 (38%), Gaps = 36/197 (18%) Query: 23 VVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV+A SGG+D+SV LL+ R G+D I L ++ +G+ A Q Sbjct: 4 VVLAYSGGLDTSVCIPLLRERYGFDKIVTVLVDVGQPRSDIERGNLRAKQ---------- 53 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + HY D E F + P + + E + R + S + +LG L Sbjct: 54 -LADEHYTIDAREEFVEKCLFPLIKANGSYEGYVLGTAIARPLIASKSAEIADKLGIKNL 112 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG--DMKKES 199 A G R G+D R + R D C + P+ D+ +E Sbjct: 113 AHGCTGR-----GNDQLRFEAIFRATD-----------------CRVIAPMRELDLAREW 150 Query: 200 VRDLAREMGLDIADKSD 216 D ARE G+D+ D Sbjct: 151 EIDYAREHGIDVPVTKD 167 >gi|315231096|ref|YP_004071532.1| ATPase [Thermococcus barophilus MP] gi|315184124|gb|ADT84309.1| ATPase [Thermococcus barophilus MP] Length = 246 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 30/52 (57%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK 59 RL D D+ P + ++ VA S G DS+ +L+ G+DV+ V ++L R+ Sbjct: 44 RLFGKDFDRAPINEKIAVAFSAGSDSTATVKILRWTGFDVVPVMVKLPQIRE 95 >gi|154509119|ref|ZP_02044761.1| hypothetical protein ACTODO_01638 [Actinomyces odontolyticus ATCC 17982] gi|293189891|ref|ZP_06608597.1| argininosuccinate synthase [Actinomyces odontolyticus F0309] gi|153798753|gb|EDN81173.1| hypothetical protein ACTODO_01638 [Actinomyces odontolyticus ATCC 17982] gi|292821194|gb|EFF80140.1| argininosuccinate synthase [Actinomyces odontolyticus F0309] Length = 406 Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 15/126 (11%) Query: 22 RVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79 RVV+A SGG+D+SV + ++ G +V+ V + + G+D+ R R Sbjct: 6 RVVLAYSGGLDTSVAIGWIGEQTGREVVAVAVDVGQ------------GGEDLEVIRQRA 53 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138 D V YV D + F +P + A E P V +R V L+ R+ GA Sbjct: 54 LDCGAVEAYVADARDEFAEEYCMPALKANALYEGKYPLVSALSRPVITKHLVKAAREFGA 113 Query: 139 DVLATG 144 +A G Sbjct: 114 STVAHG 119 >gi|317179807|dbj|BAJ57593.1| argininosuccinate synthase [Helicobacter pylori F32] Length = 350 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KPIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|294787540|ref|ZP_06752793.1| argininosuccinate synthase [Parascardovia denticolens F0305] gi|315226874|ref|ZP_07868662.1| argininosuccinate synthase [Parascardovia denticolens DSM 10105] gi|294484896|gb|EFG32531.1| argininosuccinate synthase [Parascardovia denticolens F0305] gi|315121006|gb|EFT84138.1| argininosuccinate synthase [Parascardovia denticolens DSM 10105] Length = 407 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 56/128 (43%), Gaps = 19/128 (14%) Query: 22 RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYN---SRKASKRKGSCCAGQDVYDAR 77 R+V+A SGG+D+SV L+ R G +V+ V+L L S + +++ C Sbjct: 3 RIVLAYSGGLDTSVAIPFLQDRTGKEVVAVSLDLGQGGESLETIRQRALACGA------- 55 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136 V +V D + F + +P + A + P V +R + L+ + Sbjct: 56 -------VEAHVLDARDEFASDYCMPALKANAMYQGAYPLVSAISRPLIAKHLVDAAHRF 108 Query: 137 GADVLATG 144 GAD +A G Sbjct: 109 GADTIAHG 116 >gi|261855157|ref|YP_003262440.1| exsB protein [Halothiobacillus neapolitanus c2] gi|261835626|gb|ACX95393.1| exsB protein [Halothiobacillus neapolitanus c2] Length = 235 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 + LD + VV +SGG+DS+ VAA+ K DGY V V+ Y R + K + Sbjct: 1 MSLDTENTQPKAVVLLSGGLDSATVAAIAKSDGYQVHAVSFD-YGQRHKVELKAA 54 >gi|218507247|ref|ZP_03505125.1| argininosuccinate synthase [Rhizobium etli Brasil 5] Length = 219 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 16/126 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+A SGG+D+S++ L+ + G +V+ T L G+++ AR+ Sbjct: 9 KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 55 Query: 81 DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + Y+ D E F + P + A E L R + L+ + R+ GA Sbjct: 56 EMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIARKTGA 115 Query: 139 DVLATG 144 D +A G Sbjct: 116 DAIAHG 121 >gi|119478303|ref|ZP_01618334.1| argininosuccinate synthase [marine gamma proteobacterium HTCC2143] gi|119448643|gb|EAW29888.1| argininosuccinate synthase [marine gamma proteobacterium HTCC2143] Length = 406 Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 16/126 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV+A SGG+D+SV+ L+ D Y VT G++V AR+ + Sbjct: 6 KVVLAYSGGLDTSVIVRWLQ-DTYQCEVVTF-----------TADIGQGEEVEPARKKAE 53 Query: 82 TINVSH-YVFDYEERFRNAVIVPF--ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + V Y+ D +E F + P A++ GE L R + L+ +T + GA Sbjct: 54 ALGVKEIYIDDLKEEFVRDFVFPMFRANTIYEGEY-LLGTSIARPLIAKRLIEITNETGA 112 Query: 139 DVLATG 144 D ++ G Sbjct: 113 DAISHG 118 >gi|153007431|ref|YP_001368646.1| argininosuccinate synthase [Ochrobactrum anthropi ATCC 49188] gi|151559319|gb|ABS12817.1| Argininosuccinate synthase [Ochrobactrum anthropi ATCC 49188] Length = 412 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 16/126 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+A SGG+D+S++ L+ + G +V+ T L G+++ AR+ Sbjct: 15 KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 61 Query: 81 DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + ++ D E F + P + A E L R + L+ + R+ GA Sbjct: 62 EMLGIKEIFIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIEIARKTGA 121 Query: 139 DVLATG 144 D +A G Sbjct: 122 DAIAHG 127 >gi|317178320|dbj|BAJ56108.1| argininosuccinate synthase [Helicobacter pylori F30] Length = 350 Score = 38.5 bits (88), Expect = 1.7, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KPIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|172044120|sp|A6WV13|ASSY_OCHA4 RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase Length = 406 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 16/126 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+A SGG+D+S++ L+ + G +V+ T L G+++ AR+ Sbjct: 9 KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 55 Query: 81 DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + ++ D E F + P + A E L R + L+ + R+ GA Sbjct: 56 EMLGIKEIFIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIEIARKTGA 115 Query: 139 DVLATG 144 D +A G Sbjct: 116 DAIAHG 121 >gi|57506130|ref|ZP_00372052.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195] gi|57015614|gb|EAL52406.1| conserved hypothetical protein [Campylobacter upsaliensis RM3195] Length = 327 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 13/130 (10%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+ + SGG+DS + L+ + G V + + + ++ K + + RR Sbjct: 1 MKALALFSGGLDSLLAMKLITQQGIAVKALNINIGFGSRSDKSE----------EMRRRA 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + D + V+ F Y G+ PC+DC+ F L++ + GA Sbjct: 51 ALVGAEFEMIDVRNSYLKEVL--FNPQYGYGKHFNPCIDCH-AFMFKTALAMLKDEGASF 107 Query: 141 LATGHYIRSR 150 + TG + R Sbjct: 108 IITGEVLGQR 117 >gi|297379235|gb|ADI34122.1| argininosuccinate synthase [Helicobacter pylori v225d] Length = 350 Score = 38.5 bits (88), Expect = 1.8, Method: Compositional matrix adjust. Identities = 33/132 (25%), Positives = 54/132 (40%), Gaps = 13/132 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++ + SGG+DS + LL G +V + + KR+ A + Sbjct: 2 KPIKALALFSGGLDSLLSMKLLIDQGIEVSALHFNIGFGGNKDKREYFENATAQIGAKLL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD E+F N V+ F Y G+ PC+DC+ + F + +L A Sbjct: 62 VCDI----------REQFFNDVL--FKPKYGYGKYFNPCIDCHANM-FRNAFYKMLELNA 108 Query: 139 DVLATGHYIRSR 150 D + +G + R Sbjct: 109 DFVLSGEVLGQR 120 >gi|219125079|ref|XP_002182816.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405610|gb|EEC45552.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 770 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 13/83 (15%) Query: 17 NPKDMRVVVAMSGGVDSSVVA---ALLKRD-GYDVIGVTLQL-YNSRKASKRKGSCCAGQ 71 NPK ++++++SGGVDS V+A A L+R GY++ + + Y +R SK + S Sbjct: 411 NPKTRKIIISLSGGVDSMVIASALAHLRRSLGYNLQLTAVHIDYANRPDSKAEASYV--- 467 Query: 72 DVYDARRVCDTINVSHYVFDYEE 94 R C + + ++V EE Sbjct: 468 -----ERYCQQLEIEYHVRRIEE 485 >gi|332184397|gb|AEE26651.1| NAD synthetase / Glutamine amidotransferase chain of NAD synthetase [Francisella cf. novicida 3523] Length = 249 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 11/75 (14%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83 V+ +SGG+DS+V A+L + G + L N++ QD+ DA + + + Sbjct: 33 VIGISGGIDSAVAASLAVKTGLPTTALILPSKNNQH-----------QDIQDALELVEKL 81 Query: 84 NVSHYVFDYEERFRN 98 N+ H++ + + N Sbjct: 82 NIEHHIVTIQPAYEN 96 >gi|227823766|ref|YP_002827739.1| argininosuccinate synthase [Sinorhizobium fredii NGR234] gi|227342768|gb|ACP26986.1| argininosuccinate synthase [Sinorhizobium fredii NGR234] Length = 525 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 17/136 (12%) Query: 13 DLDKNPKDMR-VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAG 70 D+ + KD++ VV+A SGG+D+S++ L+ + G +V+ T L G Sbjct: 119 DIMASHKDVKKVVLAYSGGLDTSIILKWLQTELGAEVVTFTADLGQ-------------G 165 Query: 71 QDVYDARRVCDTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSD 128 +++ AR+ + + + Y+ D E F + P + A E L R + Sbjct: 166 EELEPARKKAEMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKH 225 Query: 129 LLSVTRQLGADVLATG 144 L+ + R+ GAD +A G Sbjct: 226 LIDIARKTGADAIAHG 241 >gi|222087492|ref|YP_002546029.1| argininosuccinate synthase [Agrobacterium radiobacter K84] gi|221724940|gb|ACM28096.1| argininosuccinate synthase [Agrobacterium radiobacter K84] Length = 407 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 16/126 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+A SGG+D+S++ L+ + G +V+ T L G+++ AR+ Sbjct: 9 KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 55 Query: 81 DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + Y+ D E F + P + A E L R + L+ + ++ GA Sbjct: 56 ELLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIEIAKKTGA 115 Query: 139 DVLATG 144 D +A G Sbjct: 116 DAIAHG 121 >gi|315638034|ref|ZP_07893219.1| ThiI family protein [Campylobacter upsaliensis JV21] gi|315481882|gb|EFU72501.1| ThiI family protein [Campylobacter upsaliensis JV21] Length = 327 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 13/130 (10%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+ + SGG+DS + L+ + G V + + + ++ K + + RR Sbjct: 1 MKALALFSGGLDSLLAMKLITQQGIAVKALNINIGFGSRSDKSE----------EMRRRA 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + D + V+ F Y G+ PC+DC+ F L++ + GA Sbjct: 51 ALVGAEFEMIDVRNSYLKEVL--FNPQYGYGKHFNPCIDCH-AFMFKTALAMLKDEGASF 107 Query: 141 LATGHYIRSR 150 + TG + R Sbjct: 108 IITGEVLGQR 117 >gi|14521917|ref|NP_127394.1| hypothetical protein PAB1127 [Pyrococcus abyssi GE5] gi|5459137|emb|CAB50623.1| Hypothetical protein [Pyrococcus abyssi GE5] Length = 242 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 18/59 (30%), Positives = 35/59 (59%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 RL + +++ ++++ VA SGG DSS +L+ G+DV+ +T +L + K R+ + Sbjct: 43 RLTGKEFERDKINVKIAVAYSGGSDSSATVKILRWAGFDVVPITARLPHISKEKLREET 101 >gi|227831113|ref|YP_002832893.1| exsB protein [Sulfolobus islandicus L.S.2.15] gi|227457561|gb|ACP36248.1| exsB protein [Sulfolobus islandicus L.S.2.15] Length = 464 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 41/218 (18%), Positives = 90/218 (41%), Gaps = 29/218 (13%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 ++VS ++ +L + + K +V+V SGG+DS+V A L R+G++V + ++ + Sbjct: 222 VMVSSNKQITTLPIIEKRKKHKVLVVASGGLDSTVAATKLLREGHEVTLIHFNYHHKAEE 281 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVS--HYVFDYEERFRNAVIVPFASSYA-------AG 111 +R+ R + + + V D + +A ++ Sbjct: 282 REREA----------VRNIAEHLQVPLIEINTDLFKMIGHATLIKGGGEIVKDRKGEEGA 331 Query: 112 ETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG-HYIRSRLYVGDDGKRRRIMCRPMDLE 170 E V + FS L++ G D +A+G + + Y ++ + R++ + Sbjct: 332 EFAHEWVPARNLIFFSAALAIAEAYGYDAIASGINLEEAGAYPDNEMEFIRMLSKLSP-- 389 Query: 171 RDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMG 208 +AT + ++ P+G++ K + L E+G Sbjct: 390 -------YATGPNKKVEVLMPVGNLVKHEIVKLGYEIG 420 >gi|212224843|ref|YP_002308079.1| ATPase [Thermococcus onnurineus NA1] gi|212009800|gb|ACJ17182.1| ATPase [Thermococcus onnurineus NA1] Length = 323 Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust. Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 16/133 (12%) Query: 19 KDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 K R+ V +SGG DS V+ LL K+ ++++ VT+ + A R S V Sbjct: 46 KGERIAVGVSGGKDSVVLLHLLAKLQKKFPFELVAVTI---DEGIAGYRPPS------VE 96 Query: 75 DARRVCDTINVSHYVFDYEER--FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 ARR + + + H+++ ++E F V S+ GE C C ++ L Sbjct: 97 IARRNAEKLGIEHHIYSFKEYIGFTLDETVEIMGSFEKGERVGACSYCGVWRRWL-LNHA 155 Query: 133 TRQLGADVLATGH 145 +++ AD LA GH Sbjct: 156 AKEVEADKLAVGH 168 >gi|297621974|ref|YP_003710111.1| hypothetical protein wcw_1764 [Waddlia chondrophila WSU 86-1044] gi|297377275|gb|ADI39105.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044] Length = 462 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 8/66 (12%) Query: 6 ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65 A R+N + PKD +V V G +S++A+LLKR GYD I ++ +A ++G Sbjct: 405 AERINEI-----PKDRQVAVICGSGFRASIIASLLKRSGYDKIS---NVFGGMQAWIQEG 456 Query: 66 SCCAGQ 71 +GQ Sbjct: 457 YPVSGQ 462 >gi|322417767|ref|YP_004196990.1| Thiamine biosynthesis protein-like protein [Geobacter sp. M18] gi|320124154|gb|ADW11714.1| Thiamine biosynthesis protein-like protein [Geobacter sp. M18] Length = 334 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 10/129 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 + + +SGG+DS++ +L G V L + K + C + V A Sbjct: 4 KAIALLSGGLDSTLAVKVLLEQGIAV--EALNFTSPFCTCTGKNAGCKSEAVRVAEEFKI 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I V H DY E RN + G+ PC+DC R ++ GAD + Sbjct: 62 PIKVMHKGADYLEIIRN-------PKHGHGKGMNPCIDC-RIYLLKQAREYMKESGADFV 113 Query: 142 ATGHYIRSR 150 TG + R Sbjct: 114 ITGEVLGQR 122 >gi|325282766|ref|YP_004255307.1| Argininosuccinate synthase [Deinococcus proteolyticus MRP] gi|324314575|gb|ADY25690.1| Argininosuccinate synthase [Deinococcus proteolyticus MRP] Length = 420 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 15/90 (16%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79 ++V+A SGG+D+S++ L+++ GYDV+ T L G +V +AR + Sbjct: 6 KIVLAYSGGLDTSIIIKWLQQERGYDVVAFTADL-------------GQGAEVDEAREKA 52 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYA 109 T VS Y D E F + P S A Sbjct: 53 IRTGAVSAYALDLREEFVRDYVFPMMRSSA 82 >gi|116754741|ref|YP_843859.1| argininosuccinate synthase [Methanosaeta thermophila PT] gi|116666192|gb|ABK15219.1| argininosuccinate synthase [Methanosaeta thermophila PT] Length = 394 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 47/189 (24%), Positives = 79/189 (41%), Gaps = 30/189 (15%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V +A SGG+D+SV LL R+ Y + V L + + +D+ R + Sbjct: 7 VALAYSGGLDTSVCIPLL-RERYGMKRVVTVLVDVGQPP---------EDIERGNRRAEK 56 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 ++ HY+ D ++ F I P + + E + R + ++ V R+LG + LA Sbjct: 57 LSDEHYIIDAKDEFVRDYIFPLIKANGSYEGYVLGTAIARPLIARKVVDVARKLGINALA 116 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 G R G+D R + R AT + + +R D+ +E D Sbjct: 117 HGCTGR-----GNDQLRFEAVFR-------------ATGMRVIAPMRDL--DLSREWEID 156 Query: 203 LAREMGLDI 211 ARE G+D+ Sbjct: 157 YAREHGIDV 165 >gi|170017521|ref|YP_001728440.1| argininosuccinate synthase [Leuconostoc citreum KM20] gi|229889880|sp|B1MZP4|ASSY_LEUCK RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|169804378|gb|ACA82996.1| Argininosuccinate synthase [Leuconostoc citreum KM20] Length = 410 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 17/129 (13%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++V+A SGG+D+SV LK GYDVI V L + G+D+ + Sbjct: 4 KLVLAYSGGLDTSVAIPWLKEKGYDVIAVVLNVGQH------------GKDMVAIQEKAL 51 Query: 82 TINVSH-YVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGAD 139 + S V D + F + + P + E P V +R + L+ + + A Sbjct: 52 KVGASQSIVIDAQAEFADQYVAPVIKANMLYEGEYPMVSALSRPLIIKKLVDIAHENEAV 111 Query: 140 VLA---TGH 145 +A TGH Sbjct: 112 AIAHGSTGH 120 >gi|326922453|ref|XP_003207463.1| PREDICTED: asparagine synthetase domain-containing protein 1-like [Meleagris gallopavo] Length = 636 Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 5/68 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKR-----DGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 +P+ V V SGGVDS V+AAL R + D++ V K ++ SC + + Sbjct: 322 SPRKAHVAVLFSGGVDSMVIAALADRHVPLEEPIDLLNVAFMPKEQTKQTRTPKSCISQE 381 Query: 72 DVYDARRV 79 D RRV Sbjct: 382 MQLDLRRV 389 >gi|256823496|ref|YP_003147459.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Kangiella koreensis DSM 16069] gi|256797035|gb|ACV27691.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Kangiella koreensis DSM 16069] Length = 362 Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust. Identities = 33/147 (22%), Positives = 58/147 (39%), Gaps = 27/147 (18%) Query: 18 PKDMRVVVAM-SGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD---- 72 P+ R VA+ SGG+DS + A +++ G V G+ G C G Sbjct: 14 PQKQRKAVALISGGLDSLLAAKVIQEQGIHVEGINF----------YTGFCVEGHTHAIR 63 Query: 73 --------VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN-RT 123 ++ V + + + ++ D E +++ V+ P + G PC+DC Sbjct: 64 KKDKDKQKRNNSLWVAEQLGIKLHIIDISEEYKDIVLNP---KHGYGANLNPCLDCKIFM 120 Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSR 150 V + + + G D + TG I R Sbjct: 121 VNQAQAWAWAEENGFDFIITGEVIGQR 147 >gi|224437605|ref|ZP_03658558.1| GMP synthase [Helicobacter cinaedi CCUG 18818] gi|313144055|ref|ZP_07806248.1| GMP synthase [Helicobacter cinaedi CCUG 18818] gi|313129086|gb|EFR46703.1| GMP synthase [Helicobacter cinaedi CCUG 18818] Length = 583 Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust. Identities = 22/38 (57%), Positives = 27/38 (71%), Gaps = 1/38 (2%) Query: 5 EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKR 42 EAT+ NSL + P +V+ A+SGGVDSSVVA LL R Sbjct: 269 EATKSNSLKNTQKPTQ-KVLCAVSGGVDSSVVAILLYR 305 >gi|213864988|ref|ZP_03387107.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 42 Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 5/44 (11%) Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 LGAD +ATGHY+R +GK R + R +D +DQSYFL+ Sbjct: 2 LGADYIATGHYVRR---ADVNGKSR--LLRGLDGNKDQSYFLYT 40 >gi|257051513|ref|YP_003129346.1| GMP synthase subunit B [Halorhabdus utahensis DSM 12940] gi|256690276|gb|ACV10613.1| GMP synthase, large subunit [Halorhabdus utahensis DSM 12940] Length = 305 Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust. Identities = 49/199 (24%), Positives = 78/199 (39%), Gaps = 34/199 (17%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72 ++D D + V+A+SGGVDSS AAL YD IG L RKG ++ Sbjct: 14 EIDAQIGDSKAVIALSGGVDSSTAAAL----AYDAIGDQLTPVYVDTGLMRKGETEQIRE 69 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 +D ++ + D E V P +A GE + + +V Sbjct: 70 TFDYMDSLRIVDATDRFLDELE----GVTDPEEKRHAIGEQFI-----------REFETV 114 Query: 133 TRQLGADVLATGHYIRSRLYV-GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 R++ AD L G R+ G + P ++ D + P Sbjct: 115 AREVDADYLVQGTIYPDRIESEGTIKSHHNVGGLPDVVDFD--------------GIVEP 160 Query: 192 LGDMKKESVRDLAREMGLD 210 + D+ K+ VR++ARE+ L+ Sbjct: 161 MRDLYKDEVREVARELDLE 179 >gi|295101526|emb|CBK99071.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Faecalibacterium prausnitzii L2-6] Length = 172 Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 4/88 (4%) Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181 +F+ LL+ +LG +A+G Y R + D + + P D+S L A + Sbjct: 89 EAARFAALLTAADKLGIQYIASGRYAR----IETDAQGMSHLFAPESGAPDESGTLAALS 144 Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGL 209 + L L PLGD E V ++A + L Sbjct: 145 PEVLSRLILPLGDFAPEDVAEMAEDFKL 172 >gi|239830925|ref|ZP_04679254.1| argininosuccinate synthase [Ochrobactrum intermedium LMG 3301] gi|239823192|gb|EEQ94760.1| argininosuccinate synthase [Ochrobactrum intermedium LMG 3301] Length = 406 Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 16/126 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+A SGG+D+S++ L+ + G +V+ T L G+++ AR+ Sbjct: 9 KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 55 Query: 81 DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + ++ D E F + P + A E L R + L+ + R+ GA Sbjct: 56 EMLGIKEIFIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIARKTGA 115 Query: 139 DVLATG 144 D +A G Sbjct: 116 DAIAHG 121 >gi|218516022|ref|ZP_03512862.1| argininosuccinate synthase [Rhizobium etli 8C-3] Length = 258 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 16/126 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+A SGG+D+S++ L+ + G +V+ T L G+++ AR+ Sbjct: 26 KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 72 Query: 81 DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + Y+ D E F + P + A E L R + L+ + R+ GA Sbjct: 73 EMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIARKTGA 132 Query: 139 DVLATG 144 D +A G Sbjct: 133 DAIAHG 138 >gi|311069430|ref|YP_003974353.1| argininosuccinate synthase [Bacillus atrophaeus 1942] gi|310869947|gb|ADP33422.1| argininosuccinate synthase [Bacillus atrophaeus 1942] Length = 403 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 23/129 (17%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDV-YDA 76 +VV+A SGG+D+SV L+ GYDVI +CC G+D+ + Sbjct: 6 KVVLAYSGGLDTSVAIKWLQEQGYDVI-----------------ACCLDVGEGKDLAFVQ 48 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQ 135 ++ + + YV D +E F + ++ E P V +R + L+ V + Sbjct: 49 QKALEVGATNSYVIDAKEEFAQEFALVSLQAHTLYEGKYPLVSALSRPLIAKKLVEVAEK 108 Query: 136 LGADVLATG 144 A +A G Sbjct: 109 ENAVAVAHG 117 >gi|241206724|ref|YP_002977820.1| argininosuccinate synthase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860614|gb|ACS58281.1| argininosuccinate synthase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 407 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 16/126 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+A SGG+D+S++ L+ + G +V+ T L G+++ AR+ Sbjct: 9 KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 55 Query: 81 DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + Y+ D E F + P + A E L R + L+ + ++ GA Sbjct: 56 EMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIAKKTGA 115 Query: 139 DVLATG 144 D +A G Sbjct: 116 DAIAHG 121 >gi|157165515|ref|YP_001466416.1| ExsB protein [Campylobacter concisus 13826] gi|189038900|sp|A7ZCA8|QUEC_CAMC1 RecName: Full=7-cyano-7-deazaguanine synthase; AltName: Full=7-cyano-7-carbaguanine synthase; AltName: Full=PreQ(0) synthase; AltName: Full=Queuosine biosynthesis protein queC gi|157101540|gb|EAT99024.2| ExsB protein [Campylobacter concisus 13826] Length = 221 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64 + V MSGG+DS++ A + KR GYDV+ + YN R + K Sbjct: 3 KAVCIMSGGMDSTLCAVMAKRAGYDVVALHFD-YNQRTMKREK 44 >gi|289806672|ref|ZP_06537301.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 80 Score = 38.1 bits (87), Expect = 2.3, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 5/61 (8%) Query: 324 FKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGI 382 +C VK R Q +P + +DD + V F++ V GQ+ VFY+ + LGGGI Sbjct: 16 LRCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQSAVFYSGEV----CLGGGI 71 Query: 383 I 383 I Sbjct: 72 I 72 >gi|323209874|gb|EFZ94790.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] Length = 78 Score = 38.1 bits (87), Expect = 2.4, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 5/61 (8%) Query: 324 FKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGI 382 +C VK R Q +P + +DD + V F++ V GQ+ VFY+ + LGGGI Sbjct: 14 LRCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQSAVFYSGEV----CLGGGI 69 Query: 383 I 383 I Sbjct: 70 I 70 >gi|294495633|ref|YP_003542126.1| argininosuccinate synthase [Methanohalophilus mahii DSM 5219] gi|292666632|gb|ADE36481.1| argininosuccinate synthase [Methanohalophilus mahii DSM 5219] Length = 394 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 38/151 (25%), Positives = 63/151 (41%), Gaps = 19/151 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + V+A SGG+D+S+ LLK D +VI V + + R +DV +A + Sbjct: 4 KAVLAYSGGLDTSICVPLLKEKYDCDEVITVAVDVGQPR------------EDVEEATKK 51 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 I+ H+ D E F I P + E + R + ++ + + GA Sbjct: 52 AQDISDLHFTLDVREEFVKDYIFPLIKANGDYEGYVMGTSIARPLIAKKVVEIAEKEGAS 111 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170 +LA G + G+D R + R D+E Sbjct: 112 MLAHGCTGK-----GNDQLRFEAVFRLTDME 137 >gi|163783771|ref|ZP_02178756.1| hypothetical protein HG1285_09931 [Hydrogenivirga sp. 128-5-R1-1] gi|159880960|gb|EDP74479.1| hypothetical protein HG1285_09931 [Hydrogenivirga sp. 128-5-R1-1] Length = 348 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 7/133 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG---QDVYDAR 77 +R V +SGG+DSS+ +L+ G +V + KR+ Q V A Sbjct: 4 VRAVALLSGGLDSSLAVRILQEQGVEVKALHFYTGFCITEHKRRLGLTKKDGRQYVNPAL 63 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + + V + D E + N V+ P + G+ PC+DC R + + G Sbjct: 64 KAAAQLGVPLDIVDISEDYYNIVLNP---KFGYGKNVNPCIDC-RIFMLKKAKEIMEREG 119 Query: 138 ADVLATGHYIRSR 150 + TG + R Sbjct: 120 YHFVITGEVLYQR 132 >gi|161529233|ref|YP_001583059.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosopumilus maritimus SCM1] gi|160340534|gb|ABX13621.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosopumilus maritimus SCM1] Length = 337 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 19/133 (14%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV +SGG+DS + +++ G+DV V ++ + G C ++ R D Sbjct: 9 KVVALLSGGLDSQLAVRMMQEQGFDVSAVAIK---TPFCDFDCGRGCG----FEIRERAD 61 Query: 82 TINV---SHYVFD-YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 +NV + Y+ D Y E +N + G PC+DC R + F ++G Sbjct: 62 DLNVNLKTVYLGDEYIEMLKN-------PKHGIGAGFNPCIDC-RAMMFDAAKKHMEEIG 113 Query: 138 ADVLATGHYIRSR 150 A+ + +G + R Sbjct: 114 AEFIVSGEVLGQR 126 >gi|292654369|ref|YP_003534266.1| hypothetical protein HVO_0190 [Haloferax volcanii DS2] gi|291372836|gb|ADE05063.1| conserved hypothetical protein TIGR00268 [Haloferax volcanii DS2] Length = 298 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 10/72 (13%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V++A SGGVDSSVVAAL ++ +G + A K ++ DA+RV + Sbjct: 23 VLIAFSGGVDSSVVAAL----AHEALG------DDAVACTAKSETLPDAELDDAKRVAEE 72 Query: 83 INVSHYVFDYEE 94 I + H ++ E Sbjct: 73 IGIEHLTVEFSE 84 >gi|254428409|ref|ZP_05042116.1| tRNA methyl transferase [Alcanivorax sp. DG881] gi|196194578|gb|EDX89537.1| tRNA methyl transferase [Alcanivorax sp. DG881] Length = 361 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 31/152 (20%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD---- 72 P R + +SGG+DS + +++ G +V GV G C G Sbjct: 6 QPIKRRAIALVSGGLDSMLAVKVMQEQGIEVEGVNFY----------TGFCVEGHTHAIR 55 Query: 73 --------VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--R 122 +A V + + + ++ D E +++ V+ P + G PC+DC Sbjct: 56 KKDKDKEKRNNALWVAEQLGIKMHIIDISEEYKDVVLNP---KHGYGANLNPCLDCKIFM 112 Query: 123 TVKFSDLLSVTRQL----GADVLATGHYIRSR 150 + + +++ R+L G D + TG I R Sbjct: 113 VNQATLMINKARELAGDRGFDFIVTGEVIGQR 144 >gi|222528233|ref|YP_002572115.1| exsB protein [Caldicellulosiruptor bescii DSM 6725] gi|254764298|sp|B9MMB0|QUEC_ANATD RecName: Full=7-cyano-7-deazaguanine synthase; AltName: Full=7-cyano-7-carbaguanine synthase; AltName: Full=PreQ(0) synthase; AltName: Full=Queuosine biosynthesis protein queC gi|222455080|gb|ACM59342.1| exsB protein [Caldicellulosiruptor bescii DSM 6725] Length = 221 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 30/198 (15%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR VV +SGG+DS+ + +K GY+V ++ LY + + +++ A++ C Sbjct: 1 MRAVVVLSGGMDSTTLLYDVKSQGYEVFAISF-LYGQKHS----------KELEFAKKTC 49 Query: 81 DTINVSHYVFD---YEERFRNAVIVP---FASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 +++ + + D + E +A+ P Y T V NR + LLS++ Sbjct: 50 SLLSIPYKIVDISFFAELAPSALTTPDWNVPEGYYTDSTMKQTVVPNRNMV---LLSISA 106 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIM--CRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + A +L+ G I CR +E ++ A +L P Sbjct: 107 AYAISLGA------KKLFYGAHAGDHPIYPDCRKEFVEAMKNALYLADYIG--LELEAPY 158 Query: 193 GDMKKESVRDLAREMGLD 210 DMKKE + E+G++ Sbjct: 159 VDMKKEDILRRGLELGVN 176 >gi|212224510|ref|YP_002307746.1| hypothetical protein TON_1359 [Thermococcus onnurineus NA1] gi|212009467|gb|ACJ16849.1| hypothetical protein, conserved [Thermococcus onnurineus NA1] Length = 263 Score = 38.1 bits (87), Expect = 2.4, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 29/47 (61%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54 RL D D++P ++V+A S G DS+ +L+ G++V+ VT +L Sbjct: 61 RLTGKDFDRSPVGEKIVLAFSAGSDSTSTLKILRWAGFEVVPVTAKL 107 >gi|329766102|ref|ZP_08257661.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137373|gb|EGG41650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Nitrosoarchaeum limnia SFB1] Length = 350 Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust. Identities = 30/129 (23%), Positives = 58/129 (44%), Gaps = 11/129 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV +SGG+DS + +++ G++V V ++ + G C ++ R D Sbjct: 22 KVVALLSGGLDSQLAVRMMQEQGFEVSAVAIK---TPFCDFDCGRGCG----FEIREKAD 74 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +NV+ + + + P + G PCVDC RT+ F+ ++GA+ + Sbjct: 75 DLNVNLKTVYLGDEYIEMLKHP---KHGIGAGFNPCVDC-RTMMFNAAKKHMEEIGAEFI 130 Query: 142 ATGHYIRSR 150 +G + R Sbjct: 131 ISGEVLGQR 139 >gi|323698543|ref|ZP_08110455.1| PP-loop domain protein [Desulfovibrio sp. ND132] gi|323458475|gb|EGB14340.1| PP-loop domain protein [Desulfovibrio desulfuricans ND132] Length = 305 Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust. Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 20/126 (15%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDARRV 79 R++VA+SGG DS + LK GYDV G+ + L NS + ++RK V D Sbjct: 49 RILVALSGGKDSLALMLELKLQGYDVTGLHIDLGIPNSSEKARRK--------VED---F 97 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C + VF E + +P Y + P+ C C + +K + + G D Sbjct: 98 CTLHGLPLRVF---EMAAWGLPIPDVKKYV--KRPV-CAVCGK-MKRHHFNRIAVEEGFD 150 Query: 140 VLATGH 145 VLATGH Sbjct: 151 VLATGH 156 >gi|78042619|ref|YP_359927.1| hypothetical protein CHY_1081 [Carboxydothermus hydrogenoformans Z-2901] gi|77994734|gb|ABB13633.1| conserved hypothetical protein [Carboxydothermus hydrogenoformans Z-2901] Length = 338 Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust. Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 11/130 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 ++ + SGG+DS++ L+ G +V V R +K GQ ++ Sbjct: 2 VKALALFSGGLDSTLAIKLILEQGVEVEAVNFTSPFCRCLAK-------GQGCASTAKLA 54 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + +V + E + V P + G PC+DC R KF + ++GA Sbjct: 55 ADLGIKLHVQNCGEEYLRIVENP---PHGYGSALNPCIDC-RIFKFKKAKKLMEEIGAKF 110 Query: 141 LATGHYIRSR 150 + TG + R Sbjct: 111 MITGEVLGQR 120 >gi|116254242|ref|YP_770080.1| argininosuccinate synthase [Rhizobium leguminosarum bv. viciae 3841] gi|119361254|sp|Q1MAN9|ASSY2_RHIL3 RecName: Full=Argininosuccinate synthase 2; AltName: Full=Citrulline--aspartate ligase 2 gi|115258890|emb|CAK09999.1| putative argininosuccinate synthase [Rhizobium leguminosarum bv. viciae 3841] Length = 407 Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 16/126 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+A SGG+D+S++ L+ + G +V+ T L G+++ AR+ Sbjct: 9 KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARKKA 55 Query: 81 DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + Y+ D E F + P + A E L R + L+ + ++ GA Sbjct: 56 EMLGIKEIYIEDVREEFVRDFVFPMFRANAVYEGVYLLGTSIARPLISKHLIDIAKKTGA 115 Query: 139 DVLATG 144 D +A G Sbjct: 116 DAIAHG 121 >gi|319957259|ref|YP_004168522.1| preq(0) biosynthesis protein quec [Nitratifractor salsuginis DSM 16511] gi|319419663|gb|ADV46773.1| preQ(0) biosynthesis protein QueC [Nitratifractor salsuginis DSM 16511] Length = 225 Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust. Identities = 44/207 (21%), Positives = 82/207 (39%), Gaps = 43/207 (20%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 + V +SGG+DS+V AAL KR+GY++I V +N + ++RK C R + + Sbjct: 3 KAVCIISGGMDSAVSAALAKREGYEIIAVH---FNYGQRTERKELEC-------FRLLAE 52 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT----------------VK 125 D E R + +PF + A P +D + Sbjct: 53 ---------DLEAVERYEIDLPFFTQIGASALTDPSIDVPTEGLEPGVPVTYVPFRNGIF 103 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 S ++ + GA+ + G V ++ CR + + T ++ Sbjct: 104 LSIAAAIAEKHGAEAIVIG--------VVEEDSSGYPDCRESYIRAMEKAINLGTKEETK 155 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIA 212 ++ PL ++K + A E+G+D++ Sbjct: 156 ITIKMPLVHLRKSEIVTKALEIGVDLS 182 >gi|268679904|ref|YP_003304335.1| Queuosine synthesis-like protein [Sulfurospirillum deleyianum DSM 6946] gi|268617935|gb|ACZ12300.1| Queuosine synthesis-like protein [Sulfurospirillum deleyianum DSM 6946] Length = 261 Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 22/123 (17%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R++VA SGGVDSS L + YDV+G + A + A ++ +ARR+ D Sbjct: 17 RLIVAFSGGVDSS----FLLKTAYDVLGENVL------AISLQTPYIAESEIEEARRIAD 66 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I H V ++ P+ C C + FS L + +Q V+ Sbjct: 67 EIGARHLV----------LVKPWMEELRTNPKE-RCYLCKHAL-FSSLTTFAQQRDFRVI 114 Query: 142 ATG 144 A G Sbjct: 115 AEG 117 >gi|117926424|ref|YP_867041.1| hypothetical protein Mmc1_3145 [Magnetococcus sp. MC-1] gi|117610180|gb|ABK45635.1| conserved hypothetical protein [Magnetococcus sp. MC-1] Length = 346 Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust. Identities = 33/133 (24%), Positives = 51/133 (38%), Gaps = 10/133 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA----GQDVYDAR 77 R + +SGG+DS + LL +V V Y G+ A +DA Sbjct: 5 RALGLLSGGLDSMLATKLLMEQDIEVHCVN--FYTGFCVQSHTGAIRAKAGDPPPKHDAL 62 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + + ++ D E + V P Y G+ PC+DC + ++ QLG Sbjct: 63 HAAQILGIKLHIVDISEEYVEIVTNP---KYGYGKNLNPCMDC-KIFMIKKAWALKEQLG 118 Query: 138 ADVLATGHYIRSR 150 D L TG + R Sbjct: 119 FDFLFTGEVVGQR 131 >gi|254173902|ref|ZP_04880573.1| N-type ATP pyrophosphatase [Thermococcus sp. AM4] gi|214032151|gb|EEB72982.1| N-type ATP pyrophosphatase [Thermococcus sp. AM4] Length = 245 Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust. Identities = 16/47 (34%), Positives = 28/47 (59%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54 RL + ++ P ++V VA S G DS+ +L+ G+DV+ +T +L Sbjct: 43 RLEGREFERRPTGVKVAVAFSAGSDSTATLKILRWAGFDVVPITAKL 89 >gi|229820853|ref|YP_002882379.1| argininosuccinate synthase [Beutenbergia cavernae DSM 12333] gi|229566766|gb|ACQ80617.1| argininosuccinate synthase [Beutenbergia cavernae DSM 12333] Length = 413 Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust. Identities = 38/126 (30%), Positives = 55/126 (43%), Gaps = 15/126 (11%) Query: 22 RVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79 RVV+A SGG+D+SV + + G +VI V + + G+D+ R R Sbjct: 8 RVVLAYSGGLDTSVAIGWIGEATGAEVIAVAVDVGQ------------GGEDLDVIRQRA 55 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138 D V YV D + F +P ++ A P V +R V L+ RQ GA Sbjct: 56 LDCGAVEAYVADARDEFATEYCMPALAANAMYLDRYPLVSALSRPVIVKHLVRAARQFGA 115 Query: 139 DVLATG 144 D +A G Sbjct: 116 DTVAHG 121 >gi|313902361|ref|ZP_07835765.1| argininosuccinate synthase [Thermaerobacter subterraneus DSM 13965] gi|313467409|gb|EFR62919.1| argininosuccinate synthase [Thermaerobacter subterraneus DSM 13965] Length = 419 Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 18/127 (14%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRV 79 ++V+A SGG+D+SV LK GYDVI ++ G+D+ + ++ Sbjct: 4 KIVLAYSGGLDTSVAIPWLKETYGYDVIALS-------------ADVGEGKDLDFIRQKA 50 Query: 80 CDTINVSHYVFDYEERFRNAVIVPF--ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 V V D ERF ++P A++ G PL +R + L+ RQ G Sbjct: 51 LQVGAVEAVVVDARERFARDFVLPALQANALYQGRYPL-SAALSRPLIAQLLVETARQYG 109 Query: 138 ADVLATG 144 A +A G Sbjct: 110 ATAVAHG 116 >gi|296109149|ref|YP_003616098.1| exsB protein [Methanocaldococcus infernus ME] gi|295433963|gb|ADG13134.1| exsB protein [Methanocaldococcus infernus ME] Length = 232 Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 10/71 (14%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+ V +SGG+DS+V K GYD++ +T YN G A +++ A+++ Sbjct: 1 MKAVSILSGGLDSTVATMYAKALGYDLLAIT---YNY-------GQRAAKREIEAAKKIS 50 Query: 81 DTINVSHYVFD 91 + + + H V + Sbjct: 51 EILKIEHKVVE 61 >gi|145344203|ref|XP_001416626.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144576852|gb|ABO94919.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 714 Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust. Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 3/44 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKG 65 + V++SGGVDS V+A +LK GYDV VTL + Y +R S + Sbjct: 256 IAVSLSGGVDSMVLAYILKHQGYDV--VTLHIDYKNRPESTEEA 297 >gi|319790339|ref|YP_004151972.1| argininosuccinate synthase [Thermovibrio ammonificans HB-1] gi|317114841|gb|ADU97331.1| argininosuccinate synthase [Thermovibrio ammonificans HB-1] Length = 402 Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 54/124 (43%), Gaps = 13/124 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVV+A SGG+D+SV+ L G++VI T + G ++ D + Sbjct: 4 RVVLAYSGGLDTSVIVRWLADRGFEVITYTADV----------GQGEELDEIPDKAKASG 53 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140 + V D +E F +P + A E P + +R + L+ V ++GAD Sbjct: 54 AVEA--IVDDIKEEFARDYCMPLMRAGALYEGKYPLISALSRPLIAKKLVEVAHRVGADY 111 Query: 141 LATG 144 +A G Sbjct: 112 VAHG 115 >gi|240102208|ref|YP_002958516.1| P-loop ATPase, MJ1599 type [Thermococcus gammatolerans EJ3] gi|239909761|gb|ACS32652.1| P-loop ATPase, MJ1599 type [Thermococcus gammatolerans EJ3] Length = 276 Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust. Identities = 38/136 (27%), Positives = 64/136 (47%), Gaps = 23/136 (16%) Query: 13 DLDKNPKDM-RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 +LD+ K++ + +VA SGG D SVVA L ++ Y V + + + A + Sbjct: 44 ELDELMKNVDKAIVAYSGGKD-SVVALYLAKEVYKVPELEAVMIDH--------GLMAEE 94 Query: 72 DVYDARRVCDTINVSHYV--FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 + +ARR+ + + V V +DY + FRNA++ G++ PC C+R L Sbjct: 95 AIENARRIAEHLGVPFRVLRYDYSDIFRNALL--------KGQS--PCRACSRRT-MEKL 143 Query: 130 LSVTRQLGADVLATGH 145 + G + TGH Sbjct: 144 RKYAIRKGYRYIITGH 159 >gi|257052111|ref|YP_003129944.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Halorhabdus utahensis DSM 12940] gi|256690874|gb|ACV11211.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Halorhabdus utahensis DSM 12940] Length = 276 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 46/192 (23%), Positives = 80/192 (41%), Gaps = 40/192 (20%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V+VA SGGVDSSVVAA+ + D +G +R + + ++ +A+RV + Sbjct: 25 VLVAFSGGVDSSVVAAIAE----DALGADAVACTARSETLPEA------ELQEAKRVAEE 74 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + H + ++ E A I C C R+++ S + ++L + + Sbjct: 75 IGIRHDIVEFSELESEAFIENDGDR---------CYHC-RSMRLSAMYDRAKELDIETVC 124 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 G D G+ R + ++ E D + L D+ KE VR+ Sbjct: 125 DG------TNAADPGEGHRPGLQAVE-ELDATSPLLEH-------------DITKEEVRE 164 Query: 203 LAREMGLDIADK 214 +A L +A+K Sbjct: 165 IADHYDLSVAEK 176 >gi|298253916|ref|ZP_06977503.1| argininosuccinate synthase [Gardnerella vaginalis 5-1] gi|297532059|gb|EFH71034.1| argininosuccinate synthase [Gardnerella vaginalis 5-1] Length = 404 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 24/154 (15%) Query: 22 RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKA---SKRKGSCCAGQDVYDAR 77 R+V+A SGG+D+SV LK + G DV+ V+L + +A K + C Sbjct: 6 RIVLAYSGGLDTSVAIPYLKEQTGQDVVAVSLNVGQGGEALEVIKNRALACGA------- 58 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136 V YV D E F + + + A E P V +R + L++ Q Sbjct: 59 -------VEAYVVDAREEFADNYCMLALKANAMYEDVYPLVSALSRPLITRHLVNAAHQF 111 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170 AD +A G + G+D R + + +D E Sbjct: 112 DADTIAHGCTGK-----GNDQVRFEVAIQSLDPE 140 >gi|297243608|ref|ZP_06927539.1| argininosuccinate synthase [Gardnerella vaginalis AMD] gi|296888359|gb|EFH27100.1| argininosuccinate synthase [Gardnerella vaginalis AMD] Length = 404 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 24/154 (15%) Query: 22 RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKA---SKRKGSCCAGQDVYDAR 77 R+V+A SGG+D+SV LK + G DV+ V+L + +A K + C Sbjct: 6 RIVLAYSGGLDTSVAIPYLKEQTGQDVVAVSLNVGQGGEALEVIKNRALACGA------- 58 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136 V YV D E F + + + A E P V +R + L++ Q Sbjct: 59 -------VEAYVVDAREEFADNYCMLALKANAMYEDVYPLVSALSRPLITRHLVNAAHQF 111 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170 AD +A G + G+D R + + +D E Sbjct: 112 DADTIAHGCTGK-----GNDQVRFEVAIQSLDPE 140 >gi|300113174|ref|YP_003759749.1| tRNA methyl transferase-like protein [Nitrosococcus watsonii C-113] gi|299539111|gb|ADJ27428.1| tRNA methyl transferase-like protein [Nitrosococcus watsonii C-113] Length = 347 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 35/192 (18%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG-------Q 71 + + + +SGG+DS + +++ G V G+ G C G + Sbjct: 3 RQYKAIALVSGGLDSMLAVKVIQEQGIHVEGINF----------FTGFCVEGHTHAIRNK 52 Query: 72 DVYDARR-----VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 D A+R V + + + ++ + E ++N V+ P Y G PC+DC ++ Sbjct: 53 DKNKAKRNNALWVAEQLGIKLHMIEVIEEYKNVVLNP---KYGYGANLNPCLDC-KSFMV 108 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L+ ++ D + TG VG K +R P+ ++ L + LC Sbjct: 109 GKALAWMKENNFDFIITGE------VVGQRPKSQRAKTMPVVARESGAHDLLL---RPLC 159 Query: 187 DLRFPLGDMKKE 198 PL ++E Sbjct: 160 AKNLPLTLPERE 171 >gi|266620688|ref|ZP_06113623.1| GMP synthase protein [Clostridium hathewayi DSM 13479] gi|288867681|gb|EFC99979.1| GMP synthase protein [Clostridium hathewayi DSM 13479] Length = 435 Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 9/77 (11%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D +V++A+SGGVDSSVVAALL + IG L + RKG + DV+ + Sbjct: 140 DKKVLLALSGGVDSSVVAALLIK----AIGKQLTCVHVNHGLMRKGESESVIDVFKHQLD 195 Query: 80 CDTINVSHYVFDYEERF 96 + + V D ERF Sbjct: 196 ANLVYV-----DATERF 207 >gi|326692751|ref|ZP_08229756.1| argininosuccinate synthase [Leuconostoc argentinum KCTC 3773] Length = 409 Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 17/128 (13%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 +V+A SGG+D+SV LK GYDVI V L + G D+ A+ + Sbjct: 5 LVLAYSGGLDTSVAIPWLKEKGYDVIAVVLNV----------GQHGKDMDMIQAKALKVG 54 Query: 83 INVSHYVFDYEERFRNAVIVPF--ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + S V D + F + P A+ GE PL +R + L+ + + A Sbjct: 55 ASQS-IVIDAQAEFATDYVAPVIKANMLYEGEYPLVSA-LSRPLIIKKLVDIAHENNAVA 112 Query: 141 LA---TGH 145 +A TGH Sbjct: 113 IAHGSTGH 120 >gi|325474270|gb|EGC77458.1| GMP synthase [Treponema denticola F0402] Length = 514 Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust. Identities = 18/30 (60%), Positives = 24/30 (80%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKR 42 D+ KD +V++A+SGGVDSSV+AALL R Sbjct: 212 DVQNTVKDGKVLLALSGGVDSSVLAALLNR 241 >gi|308801591|ref|XP_003078109.1| Predicted 3'-5' exonuclease (ISS) [Ostreococcus tauri] gi|116056560|emb|CAL52849.1| Predicted 3'-5' exonuclease (ISS) [Ostreococcus tauri] Length = 1313 Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust. Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 3/44 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKG 65 + V++SGGVDS V+A +LK GYDV VTL + Y +R S + Sbjct: 863 IAVSLSGGVDSMVLAYILKHQGYDV--VTLHIDYKNRPESTEEA 904 >gi|294775258|ref|ZP_06740781.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein [Bacteroides vulgatus PC510] gi|294450835|gb|EFG19312.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein [Bacteroides vulgatus PC510] Length = 435 Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 9/77 (11%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D +V++A+SGGVDSSVVAALL + IG L + RKG A +V+ Sbjct: 140 DKKVLLALSGGVDSSVVAALLLK----AIGNNLVCVHVNHGLMRKGESEAVIEVFK---- 191 Query: 80 CDTINVSHYVFDYEERF 96 + +N + D +RF Sbjct: 192 -NQLNANLIYVDATDRF 207 >gi|118592068|ref|ZP_01549462.1| argininosuccinate synthase [Stappia aggregata IAM 12614] gi|118435364|gb|EAV42011.1| argininosuccinate synthase [Stappia aggregata IAM 12614] Length = 406 Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 16/126 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+A SGG+D+S++ L+ + G +V+ T L G+++ AR+ Sbjct: 8 KVVLAYSGGLDTSIILKWLQTELGCEVVTFTADL-------------GQGEELEPARKKA 54 Query: 81 DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + Y+ D E F + P + A E L R + L+ + ++ GA Sbjct: 55 EMLGIKEIYIDDLREEFIRDFVFPMFRANAVYEGVYLLGTSIARPLISKRLIEIAKETGA 114 Query: 139 DVLATG 144 D +A G Sbjct: 115 DAIAHG 120 >gi|319957802|ref|YP_004169065.1| thiamine biosynthesis protein:exsb [Nitratifractor salsuginis DSM 16511] gi|319420206|gb|ADV47316.1| thiamine biosynthesis protein:ExsB [Nitratifractor salsuginis DSM 16511] Length = 328 Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust. Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 13/130 (10%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR + SGG+DS + L+ G DV + + + G G +R Sbjct: 1 MRAISLFSGGLDSMLAVKLMTEQGIDVTALYVHI----------GFGSTGDVSEQLKRRA 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + D E + ++ F Y G+ PC+DC+ + F ++ + GA Sbjct: 51 ELAGADFRMVDVREDYIQNIL--FDPVYGYGKNFNPCIDCHGYM-FKIARALMPEEGASF 107 Query: 141 LATGHYIRSR 150 L TG + R Sbjct: 108 LVTGEVVGQR 117 >gi|283783148|ref|YP_003373902.1| argininosuccinate synthase [Gardnerella vaginalis 409-05] gi|283442007|gb|ADB14473.1| argininosuccinate synthase [Gardnerella vaginalis 409-05] Length = 404 Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 24/154 (15%) Query: 22 RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKA---SKRKGSCCAGQDVYDAR 77 R+V+A SGG+D+SV LK + G DV+ V+L + +A K + C Sbjct: 6 RIVLAYSGGLDTSVAIPYLKEQTGQDVVAVSLNVGQGGEALEVIKNRALACGA------- 58 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQL 136 V YV D E F + + + A E P V +R + L++ Q Sbjct: 59 -------VEAYVVDAREEFADNYCMLALKANAMYEDVYPLVSALSRPLITRHLVNAAHQF 111 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170 AD +A G + G+D R + + +D E Sbjct: 112 DADTIAHGCTGK-----GNDQVRFEVAIQSLDPE 140 >gi|42527224|ref|NP_972322.1| GMP synthase [Treponema denticola ATCC 35405] gi|50400363|sp|Q73LZ4|GUAA_TREDE RecName: Full=GMP synthase [glutamine-hydrolyzing]; AltName: Full=GMP synthetase; AltName: Full=Glutamine amidotransferase gi|41817648|gb|AAS12233.1| GMP synthase [Treponema denticola ATCC 35405] Length = 523 Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust. Identities = 18/30 (60%), Positives = 24/30 (80%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKR 42 D+ KD +V++A+SGGVDSSV+AALL R Sbjct: 221 DVQNTVKDGKVLLALSGGVDSSVLAALLNR 250 >gi|329765762|ref|ZP_08257331.1| ExsB family protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137828|gb|EGG42095.1| ExsB family protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 265 Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 22/124 (17%) Query: 22 RVVVAMSGGVDSSVVA-ALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V++A+SGGVDS++VA A ++ G I VT K +++ A+++C Sbjct: 16 KVMIALSGGVDSALVAYAAFQKLGNSAIAVTADYKTLSK-----------EELETAKQIC 64 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 I + + DY+E +N V +S C C R L+S+ +Q +V Sbjct: 65 SEIGIKQILVDYDE-LQNEEFVKNSSDR--------CFHC-RLELGDHLISLAKQHDVEV 114 Query: 141 LATG 144 + G Sbjct: 115 IVDG 118 >gi|237709041|ref|ZP_04539522.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|265755532|ref|ZP_06090153.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|229457103|gb|EEO62824.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263234138|gb|EEZ19731.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 435 Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 9/77 (11%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D +V++A+SGGVDSSVVAALL + IG L + RKG A +V+ Sbjct: 140 DKKVLLALSGGVDSSVVAALLLK----AIGNNLVCVHVNHGLMRKGESEAVIEVFK---- 191 Query: 80 CDTINVSHYVFDYEERF 96 + +N + D +RF Sbjct: 192 -NQLNANLIYVDATDRF 207 >gi|119361287|sp|Q11D10|ASSY_MESSB RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase Length = 408 Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust. Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 16/126 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+A SGG+D+S++ L+ + G +V+ T L G+++ ARR Sbjct: 9 KVVLAYSGGLDTSIILKWLQTELGAEVVTFTADL-------------GQGEELEPARRKA 55 Query: 81 DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + ++ D E F + P + A E T L R + L+ + + GA Sbjct: 56 EMLGIKEIHIEDLREEFVRDFVFPMFRANALYEGTYLLGTSIARPLIAKRLVEIAAETGA 115 Query: 139 DVLATG 144 D +A G Sbjct: 116 DAIAHG 121 >gi|254167304|ref|ZP_04874156.1| hypothetical protein ABOONEI_2117 [Aciduliprofundum boonei T469] gi|197623567|gb|EDY36130.1| hypothetical protein ABOONEI_2117 [Aciduliprofundum boonei T469] Length = 288 Score = 37.7 bits (86), Expect = 3.8, Method: Compositional matrix adjust. Identities = 46/192 (23%), Positives = 74/192 (38%), Gaps = 25/192 (13%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 L K + ++ +A+SGG DS V+ YD+ G + L + K + Sbjct: 36 LKKYKPEGKIAIALSGGKDSMVLLHYFAERDYDIFGYFINLGIGEHSDKMEKL------- 88 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 R C V V + E + + G PC C TVK + V Sbjct: 89 --VRNACKEYGVELIVTNLREEYGFGI---------EGVRRKPCSVCG-TVKRYLMNKVP 136 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR--FP 191 R+ GA ++ATGH + L D + + + R+ +L +T + L +R + Sbjct: 137 RENGAKLVATGHNMDDFL----DFFFKNTLAKNYQWNRNMVPYLPSTHPKMLPKIRPLYL 192 Query: 192 LGDMKKESVRDL 203 LGD + E L Sbjct: 193 LGDKEIEMYAKL 204 >gi|212692102|ref|ZP_03300230.1| hypothetical protein BACDOR_01597 [Bacteroides dorei DSM 17855] gi|237724624|ref|ZP_04555105.1| conserved hypothetical protein [Bacteroides sp. D4] gi|212665494|gb|EEB26066.1| hypothetical protein BACDOR_01597 [Bacteroides dorei DSM 17855] gi|229436819|gb|EEO46896.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 435 Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 9/77 (11%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D +V++A+SGGVDSSVVAALL + IG L + RKG A +V+ Sbjct: 140 DKKVLLALSGGVDSSVVAALLLK----AIGNNLVCVHVNHGLMRKGESEAVIEVFK---- 191 Query: 80 CDTINVSHYVFDYEERF 96 + +N + D +RF Sbjct: 192 -NQLNANLIYVDATDRF 207 >gi|150006079|ref|YP_001300823.1| putative GMP synthase [Bacteroides vulgatus ATCC 8482] gi|254883447|ref|ZP_05256157.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|319641766|ref|ZP_07996447.1| GMP synthase 2 [Bacteroides sp. 3_1_40A] gi|149934503|gb|ABR41201.1| putative GMP synthase [Bacteroides vulgatus ATCC 8482] gi|254836240|gb|EET16549.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|317386600|gb|EFV67498.1| GMP synthase 2 [Bacteroides sp. 3_1_40A] Length = 435 Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 9/77 (11%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D +V++A+SGGVDSSVVAALL + IG L + RKG A +V+ Sbjct: 140 DKKVLLALSGGVDSSVVAALLLK----AIGNNLVCVHVNHGLMRKGESEAVIEVFK---- 191 Query: 80 CDTINVSHYVFDYEERF 96 + +N + D +RF Sbjct: 192 -NQLNANLIYVDATDRF 207 >gi|89101214|ref|ZP_01174042.1| argininosuccinate synthase(citrulline--aspartate ligase) [Bacillus sp. NRRL B-14911] gi|89084067|gb|EAR63240.1| argininosuccinate synthase(citrulline--aspartate ligase) [Bacillus sp. NRRL B-14911] Length = 401 Score = 37.4 bits (85), Expect = 3.8, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 55/131 (41%), Gaps = 23/131 (17%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDV-Y 74 + +VV+A SGG+D+SV L GY V+ +CC G+D+ + Sbjct: 3 NQKVVLAYSGGLDTSVAIKWLGDQGYSVV-----------------ACCLDVGEGKDLKF 45 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVT 133 + V YV D +E F N + ++A E P V +R + L+ V Sbjct: 46 IQEKALKVGAVQSYVLDVKEEFANEYALAALQAHALYEGKYPLVSALSRPLIAKKLVEVA 105 Query: 134 RQLGADVLATG 144 + GA +A G Sbjct: 106 EKEGAAAVAHG 116 >gi|328957417|ref|YP_004374803.1| argininosuccinate synthase [Carnobacterium sp. 17-4] gi|328673741|gb|AEB29787.1| argininosuccinate synthase [Carnobacterium sp. 17-4] Length = 404 Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust. Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 24/101 (23%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC----AGQDV-YDA 76 +VV+A SGG+D+SV L +GYDVI +CC G+++ + Sbjct: 5 KVVLAYSGGLDTSVSIKWLMDEGYDVI-----------------ACCLDVGEGKNLDFIK 47 Query: 77 RRVCDTINVSHYVFDYEERFRN--AVIVPFASSYAAGETPL 115 + + V+ Y D ++ F N A+I A +Y G+ PL Sbjct: 48 DKAIEIGAVASYTIDAKDEFANDFALIALQAHTYYEGKYPL 88 >gi|331092894|ref|ZP_04586583.2| FAD-binding protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331020974|gb|EGI01031.1| FAD-binding protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 415 Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust. Identities = 17/37 (45%), Positives = 25/37 (67%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY 55 ++MR VV + G S+ AALLKR G+DV+ + QL+ Sbjct: 6 REMRQVVVIGAGPAGSIAAALLKRQGHDVLIIERQLF 42 >gi|110835125|ref|YP_693984.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alcanivorax borkumensis SK2] gi|110648236|emb|CAL17712.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alcanivorax borkumensis SK2] Length = 361 Score = 37.4 bits (85), Expect = 4.0, Method: Compositional matrix adjust. Identities = 33/152 (21%), Positives = 60/152 (39%), Gaps = 31/152 (20%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD---- 72 P R + +SGG+DS + +++ G +V GV G C G Sbjct: 6 QPIKRRAIALVSGGLDSMLAVKVMQDQGIEVEGVNFY----------TGFCVEGHTHAIR 55 Query: 73 --------VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN--R 122 +A V + + + ++ D E +++ V+ P + G PC+DC Sbjct: 56 KKDKDKEKRNNALWVAEQLGIKMHIIDISEEYKDVVLNP---KHGYGANLNPCLDCKIFM 112 Query: 123 TVKFSDLLSVTRQL----GADVLATGHYIRSR 150 + + +++ R+L G D + TG I R Sbjct: 113 VNQATLMINKARELAGDRGFDFIVTGEVIGQR 144 >gi|126726430|ref|ZP_01742271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacterales bacterium HTCC2150] gi|126704293|gb|EBA03385.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacterales bacterium HTCC2150] Length = 36 Score = 37.4 bits (85), Expect = 4.1, Method: Composition-based stats. Identities = 17/34 (50%), Positives = 24/34 (70%), Gaps = 2/34 (5%) Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 V+ +E G+++GQACVFY +DS R+ GGG I Sbjct: 2 VELITAEEGISAGQACVFYDADS--TRIFGGGWI 33 >gi|296120436|ref|YP_003628214.1| GMP synthase, large subunit [Planctomyces limnophilus DSM 3776] gi|296012776|gb|ADG66015.1| GMP synthase, large subunit [Planctomyces limnophilus DSM 3776] Length = 525 Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 26/48 (54%), Gaps = 4/48 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 + RV+ +SGGVDSSVVAALL Y IG L RKG C Sbjct: 227 NSRVICGLSGGVDSSVVAALL----YKAIGSQLSCIFVDNGLLRKGEC 270 >gi|222481023|ref|YP_002567260.1| argininosuccinate synthase [Halorubrum lacusprofundi ATCC 49239] gi|222453925|gb|ACM58190.1| argininosuccinate synthase [Halorubrum lacusprofundi ATCC 49239] Length = 412 Score = 37.4 bits (85), Expect = 4.1, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 63/150 (42%), Gaps = 20/150 (13%) Query: 23 VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 V +A SGG+D++V LLK + GYD VIGV + + ++ +A Sbjct: 4 VALAFSGGLDTTVCVPLLKEEYGYDEVIGVNVDVGQPT------------EEFDEAEETA 51 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + +V D +E F + ++ PL R V +L V + G D Sbjct: 52 DALGLDLHVVDAKEEFADLCYDAVKTNATYQGYPLGTA-LARPVIAEAILGVAEEQGCDA 110 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170 +A G + G+D R + R DLE Sbjct: 111 IAHGCTGK-----GNDQLRFEAVWRGSDLE 135 >gi|298345148|ref|YP_003717835.1| argininosuccinate synthase [Mobiluncus curtisii ATCC 43063] gi|304390735|ref|ZP_07372687.1| argininosuccinate synthase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298235209|gb|ADI66341.1| argininosuccinate synthase [Mobiluncus curtisii ATCC 43063] gi|304325618|gb|EFL92864.1| argininosuccinate synthase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 410 Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 15/126 (11%) Query: 22 RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RVV+A SGG+D+SV +K + G D I V++ + G DV +R Sbjct: 4 RVVLAYSGGLDTSVAIGWMKDKLGVDTIAVSVDV----------GQGGEDMDVIR-QRAL 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPF--ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D V Y+ D ++ F +P A+ G+ PL +R + L+ +Q GA Sbjct: 53 DCGAVEAYIADAKDEFATEYCMPSLQANGLYQGQYPLVSA-LSRPLIAKHLVMAAKQFGA 111 Query: 139 DVLATG 144 +A G Sbjct: 112 TTMAHG 117 >gi|298492860|ref|YP_003723037.1| exsB protein ['Nostoc azollae' 0708] gi|298234778|gb|ADI65914.1| exsB protein ['Nostoc azollae' 0708] Length = 224 Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust. Identities = 45/203 (22%), Positives = 82/203 (40%), Gaps = 34/203 (16%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+ V+ +SGG+DSS V + DG + ++ Y + + + + G+ V Sbjct: 1 MKAVILLSGGLDSSTVLYQARADGCECYAISFD-YQQQHCRELQSAVLVGKSVG------ 53 Query: 81 DTINVSHYVFDYEERFR-------NAVIVPFASSY--AAGETPLPCVDCNRTVKFSDLLS 131 V H V +++ R +A+ +P A S + P+ V T+ S L Sbjct: 54 ---VVQHQVVNFDLRLWGGSALTDDAIALPQARSLDEMSQNIPVTYVPARNTIFLSFALG 110 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIM--CRPMDLERDQSYFLFATTQ---QQLC 186 + A+ R+Y+G + CRP ++ Q F T Q Q Sbjct: 111 YAEVIAAE----------RVYIGVNALDYSGYPDCRPDYIQAMQEVFRLGTKQGREGQPI 160 Query: 187 DLRFPLGDMKKESVRDLAREMGL 209 ++ PL ++KK + L ++G+ Sbjct: 161 NIIAPLVNLKKTEIIQLGNQLGV 183 >gi|262383281|ref|ZP_06076417.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262294179|gb|EEY82111.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 435 Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 9/81 (11%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D +V++A+SGGVDSSVVAALL + IG L + RKG +DV + + Sbjct: 140 DKKVLLALSGGVDSSVVAALLLK----AIGDKLVCVHVNHGLMRKGE---SEDVVEVFK- 191 Query: 80 CDTINVSHYVFDYEERFRNAV 100 + +N + D +RF N + Sbjct: 192 -NQLNANLVYVDATDRFLNKL 211 >gi|307150182|ref|YP_003885566.1| exsB protein [Cyanothece sp. PCC 7822] gi|306980410|gb|ADN12291.1| exsB protein [Cyanothece sp. PCC 7822] Length = 227 Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 12/69 (17%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83 VV +SGG+DS+ AA+ DGY+VI ++L Y R +++ A++V + Sbjct: 7 VVLLSGGLDSATSAAIALADGYEVIALSLS-YGQRHQ----------RELQAAKKVVAAL 55 Query: 84 NV-SHYVFD 91 ++ SHY+ D Sbjct: 56 DIKSHYIMD 64 >gi|150008446|ref|YP_001303189.1| putative GMP synthase [Parabacteroides distasonis ATCC 8503] gi|255014181|ref|ZP_05286307.1| putative GMP synthase [Bacteroides sp. 2_1_7] gi|301309336|ref|ZP_07215278.1| GMP synthase, C- domain protein [Bacteroides sp. 20_3] gi|149936870|gb|ABR43567.1| putative GMP synthase [Parabacteroides distasonis ATCC 8503] gi|300832425|gb|EFK63053.1| GMP synthase, C- domain protein [Bacteroides sp. 20_3] Length = 435 Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 9/81 (11%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D +V++A+SGGVDSSVVAALL + IG L + RKG +DV + + Sbjct: 140 DKKVLLALSGGVDSSVVAALLLK----AIGDKLVCVHVNHGLMRKGE---SEDVVEVFK- 191 Query: 80 CDTINVSHYVFDYEERFRNAV 100 + +N + D +RF N + Sbjct: 192 -NQLNANLVYVDATDRFLNKL 211 >gi|320096273|ref|ZP_08027852.1| argininosuccinate synthase [Actinomyces sp. oral taxon 178 str. F0338] gi|319976794|gb|EFW08558.1| argininosuccinate synthase [Actinomyces sp. oral taxon 178 str. F0338] Length = 407 Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 15/126 (11%) Query: 22 RVVVAMSGGVDSSVVAALL-KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79 RVV+A SGG+D+SV + ++ G +V+ V + + G+D+ R R Sbjct: 7 RVVLAYSGGLDTSVAIGWIGEQTGREVVAVAVDVGQ------------GGEDLEVIRQRA 54 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138 D V YV D E F + +P + E P V +R V L+ R+ GA Sbjct: 55 LDCGAVEAYVADAREEFASDYCMPALKANGLYEGRYPLVSALSRPVIVKHLVKAAREFGA 114 Query: 139 DVLATG 144 +A G Sbjct: 115 TTVAHG 120 >gi|298376303|ref|ZP_06986259.1| GMP synthase, C- domain protein [Bacteroides sp. 3_1_19] gi|298267340|gb|EFI08997.1| GMP synthase, C- domain protein [Bacteroides sp. 3_1_19] Length = 435 Score = 37.4 bits (85), Expect = 4.3, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 9/81 (11%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D +V++A+SGGVDSSVVAALL + IG L + RKG +DV + + Sbjct: 140 DKKVLLALSGGVDSSVVAALLLK----AIGDKLVCVHVNHGLMRKGE---SEDVVEVFK- 191 Query: 80 CDTINVSHYVFDYEERFRNAV 100 + +N + D +RF N + Sbjct: 192 -NQLNANLVYVDATDRFLNKL 211 >gi|256841570|ref|ZP_05547077.1| GMP synthase domain-containing protein [Parabacteroides sp. D13] gi|256737413|gb|EEU50740.1| GMP synthase domain-containing protein [Parabacteroides sp. D13] Length = 435 Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 9/81 (11%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D +V++A+SGGVDSSVVAALL + IG L + RKG +DV + + Sbjct: 140 DKKVLLALSGGVDSSVVAALLLK----AIGDKLVCVHVNHGLMRKGE---SEDVVEVFK- 191 Query: 80 CDTINVSHYVFDYEERFRNAV 100 + +N + D +RF N + Sbjct: 192 -NQLNANLVYVDATDRFLNKL 211 >gi|157804083|ref|YP_001492632.1| trans-regulatory protein ExsB [Rickettsia canadensis str. McKiel] gi|167016449|sp|A8EZR4|QUEC_RICCK RecName: Full=7-cyano-7-deazaguanine synthase; AltName: Full=7-cyano-7-carbaguanine synthase; AltName: Full=PreQ(0) synthase; AltName: Full=Queuosine biosynthesis protein queC gi|157785346|gb|ABV73847.1| Trans-regulatory protein ExsB [Rickettsia canadensis str. McKiel] Length = 227 Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust. Identities = 43/194 (22%), Positives = 76/194 (39%), Gaps = 16/194 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++V +SGG DS+ V A+ ++ GY++ ++ A RK + Y+ ++ Sbjct: 3 KLVNLVSGGADSATVLAIAQKMGYEIYAMSFNYGQRNNAELRKVRELVKE--YNVKQ-HK 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFAS--SYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +N+ F N + VP + + P+ V T+ S L +GA Sbjct: 60 IVNIDLRAFSGSALTDNNISVPHYHDVNELPDDVPVTYVPARNTIFLSYALGFAEVIGAK 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT---QQQLCDLRFPLGDMK 196 + G + D CRP ++ + AT Q + + PL DM Sbjct: 120 DIFIGVHTSDSANYPD--------CRPEYIKSFEEMANLATNMGVQGKKITIHTPLIDMT 171 Query: 197 KESVRDLAREMGLD 210 KE + E+G+D Sbjct: 172 KEQIIRTGLELGVD 185 >gi|308234263|ref|ZP_07665000.1| GMP synthase, large subunit [Atopobium vaginae DSM 15829] gi|328943814|ref|ZP_08241279.1| GMP synthase [Atopobium vaginae DSM 15829] gi|327491783|gb|EGF23557.1| GMP synthase [Atopobium vaginae DSM 15829] Length = 538 Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust. Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 9/77 (11%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D +V++A+SGGVDSSVVAAL+ R IG L RKG ++V+ + Sbjct: 228 DKKVILALSGGVDSSVVAALVHR----AIGKQLTCVFVNHGLLRKGEPELVEEVFRKQFD 283 Query: 80 CDTINVSHYVFDYEERF 96 D ++V EER+ Sbjct: 284 VDLVHV-----HAEERY 295 >gi|319790392|ref|YP_004152025.1| protein of unknown function DUF814 [Thermovibrio ammonificans HB-1] gi|317114894|gb|ADU97384.1| protein of unknown function DUF814 [Thermovibrio ammonificans HB-1] Length = 329 Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust. Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 18/123 (14%) Query: 28 SGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSH 87 SGG+DS + A LL+ G+ V+GV +Y S G+D + +++ D + + Sbjct: 11 SGGLDSVIAAKLLQDMGFKVVGV--HIY----------SPLFGKDRKELQKLADILGIEL 58 Query: 88 YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYI 147 + + + + + P Y G+ PC+DC + L V + GA VLATG + Sbjct: 59 KLVEAGDDYLQILSSP---RYGYGKNLNPCIDC-KAYMLRKLKEVAPE-GA-VLATGEVL 112 Query: 148 RSR 150 R Sbjct: 113 GQR 115 >gi|309776979|ref|ZP_07671949.1| GMP synthase, C- domain protein [Erysipelotrichaceae bacterium 3_1_53] gi|308915390|gb|EFP61160.1| GMP synthase, C- domain protein [Erysipelotrichaceae bacterium 3_1_53] Length = 430 Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 9/77 (11%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D +V++A+SGGVDSSVVAALL + IG L + RKG + +V+ + Sbjct: 135 DRKVLLALSGGVDSSVVAALLLK----AIGKQLYCVHVNHGLMRKGESESVIEVFQNQMD 190 Query: 80 CDTINVSHYVFDYEERF 96 + I V D ERF Sbjct: 191 ANLIYV-----DASERF 202 >gi|116753752|ref|YP_842870.1| exsB protein [Methanosaeta thermophila PT] gi|121693804|sp|A0B6A6|QUEC_METTP RecName: Full=7-cyano-7-deazaguanine synthase; AltName: Full=7-cyano-7-carbaguanine synthase; AltName: Full=Archaeosine biosynthesis protein queC; AltName: Full=PreQ(0) synthase gi|116665203|gb|ABK14230.1| preQ(0) biosynthesis protein QueC [Methanosaeta thermophila PT] Length = 224 Score = 37.4 bits (85), Expect = 4.6, Method: Compositional matrix adjust. Identities = 51/213 (23%), Positives = 84/213 (39%), Gaps = 32/213 (15%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R V SGG+DS+V A + +R G DV + + ++A +R ++ R+ D Sbjct: 3 RAVCLCSGGLDSTVAATIARRSGMDV--YLIHVSYGQQAERR--------EIEAIERIAD 52 Query: 82 TINVSHYVFDYEERFRN-AVIVPFASSYAAGE--------TPLPCVDCNRTVKFSDLLSV 132 I S + + FRN + + + GE TP V C TV S + Sbjct: 53 AIGASDLMCSRIDLFRNISALTTQGARIPRGEEVSLDSESTPPTWVYCRNTVLLSMAAAY 112 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ-QQLCDLRFP 191 LGA + G + D+ RP +E+ + A + + P Sbjct: 113 AEYLGAHSIYVGFNAEEAMSYPDN--------RPEFVEQFNALLEKAVASFSRPPKVVAP 164 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQ 224 L DM+K +D+ R +G DI + C++ Sbjct: 165 LVDMRK---KDIVR-LGADIKAPLELTWSCYLN 193 >gi|124027202|ref|YP_001012522.1| argininosuccinate synthase [Hyperthermus butylicus DSM 5456] gi|166219971|sp|A2BJL6|ASSY_HYPBU RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|123977896|gb|ABM80177.1| Argininosuccinate synthase [Hyperthermus butylicus DSM 5456] Length = 396 Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust. Identities = 15/34 (44%), Positives = 26/34 (76%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54 M+VV+A SGG+D+S + LL+ G++V+ VT+ + Sbjct: 1 MKVVLAYSGGLDTSAILVLLREQGHEVVTVTVSV 34 >gi|315231454|ref|YP_004071890.1| hypothetical protein TERMP_01692 [Thermococcus barophilus MP] gi|315184482|gb|ADT84667.1| hypothetical protein TERMP_01692 [Thermococcus barophilus MP] Length = 274 Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust. Identities = 34/136 (25%), Positives = 62/136 (45%), Gaps = 23/136 (16%) Query: 13 DLDKNPKDM-RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 +L++ KD+ + +VA SGG DS+ VA L ++ Y V + + + AG+ Sbjct: 44 ELEELMKDVDKAIVAFSGGKDST-VALYLAKEVYKVPELEAVMIDH--------GFMAGE 94 Query: 72 DVYDARRVCDTINVSHYV--FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 + +A+R+ + +NV + +DY + FR A + + PC C++ L Sbjct: 95 AIENAKRIAEYLNVQFTILRYDYSDIFREAFL----------KAQSPCRRCSKRT-MEKL 143 Query: 130 LSVTRQLGADVLATGH 145 + G + TGH Sbjct: 144 RRYALKKGVKYIITGH 159 >gi|330964714|gb|EGH64974.1| hypothetical protein PSYAC_08692 [Pseudomonas syringae pv. actinidiae str. M302091] Length = 415 Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 +++R VV + G S+ AALLKR G+DV+ + QL+ + S + C D + Sbjct: 6 REIRQVVVIGAGPAGSIAAALLKRQGHDVLIIERQLFP--RFSIGESLLCHCLDFVEEAG 63 Query: 79 VCDTINVSHY 88 + D +N + + Sbjct: 64 MLDAVNAAGF 73 >gi|330878016|gb|EGH12165.1| hypothetical protein PSYMP_20004 [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 415 Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 +++R VV + G S+ AALLKR G+DV+ + QL+ + S + C D + Sbjct: 6 REIRQVVVIGAGPAGSIAAALLKRQGHDVLIIERQLFP--RFSIGESLLCHCLDFVEEAG 63 Query: 79 VCDTINVSHY 88 + D +N + + Sbjct: 64 MLDAVNAAGF 73 >gi|199597668|ref|ZP_03211096.1| Argininosuccinate synthase [Lactobacillus rhamnosus HN001] gi|258509812|ref|YP_003172563.1| argininosuccinate synthase [Lactobacillus rhamnosus GG] gi|199591475|gb|EDY99553.1| Argininosuccinate synthase [Lactobacillus rhamnosus HN001] gi|257149739|emb|CAR88712.1| Argininosuccinate synthase [Lactobacillus rhamnosus GG] gi|259651075|dbj|BAI43237.1| argininosuccinate synthase [Lactobacillus rhamnosus GG] Length = 406 Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust. Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 12/124 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++V+A SGG+D+SV L GY+VI V L + G A D ++ Sbjct: 4 KIVLAYSGGLDTSVAIPWLMDKGYEVIAVVLNV----------GQPDADFDAIQ-QKALK 52 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGADV 140 + V D ++ F + + P + A E P V +R + L+ + A Sbjct: 53 VGAIDSIVIDAQDEFADHYVAPVIKANALYEGDYPLVSALSRPLIIEHLVKIAHAQNATA 112 Query: 141 LATG 144 +A G Sbjct: 113 IAHG 116 >gi|14591685|ref|NP_143773.1| hypothetical protein PH1943 [Pyrococcus horikoshii OT3] gi|3258387|dbj|BAA31070.1| 243aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 243 Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust. Identities = 18/47 (38%), Positives = 27/47 (57%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54 RL + + D ++ VA SGG DSS +L+ G+DVI +T +L Sbjct: 44 RLEGKEFPRGKIDFKMAVAYSGGSDSSATVKILRWAGFDVIPITAKL 90 >gi|15896988|ref|NP_341593.1| transcription regulator (exsB) related protein [Sulfolobus solfataricus P2] gi|284173860|ref|ZP_06387829.1| transcription regulator (exsB) related protein [Sulfolobus solfataricus 98/2] gi|74543016|sp|Q981C9|QUEC_SULSO RecName: Full=7-cyano-7-deazaguanine synthase; AltName: Full=7-cyano-7-carbaguanine synthase; AltName: Full=Archaeosine biosynthesis protein queC; AltName: Full=PreQ(0) synthase gi|13813145|gb|AAK40383.1| Transcription regulator (exsB) related protein [Sulfolobus solfataricus P2] gi|261601641|gb|ACX91244.1| exsB protein [Sulfolobus solfataricus 98/2] Length = 464 Score = 37.4 bits (85), Expect = 4.8, Method: Compositional matrix adjust. Identities = 18/65 (27%), Positives = 37/65 (56%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 ++V+ + +L + + K RV+V SGG+DS+V A L R+G++V + ++ + Sbjct: 222 VMVTSNKLITTLPIMEKRKKYRVLVVASGGLDSTVAATKLLREGHEVTLIHFNYHHKAEE 281 Query: 61 SKRKG 65 +R+ Sbjct: 282 KEREA 286 >gi|254173021|ref|ZP_04879695.1| ATPase, PP-loop superfamily [Thermococcus sp. AM4] gi|214033177|gb|EEB74005.1| ATPase, PP-loop superfamily [Thermococcus sp. AM4] Length = 306 Score = 37.4 bits (85), Expect = 4.9, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 4/52 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL----YNSRKASKRKGSC 67 D RV+V +SGG DS+V A +LK+ GY++ + + L Y+ + S K C Sbjct: 49 DERVLVVVSGGKDSAVTAYILKKLGYNIECLHINLGIGEYSEKSESYAKKQC 100 >gi|212703980|ref|ZP_03312108.1| hypothetical protein DESPIG_02033 [Desulfovibrio piger ATCC 29098] gi|212672593|gb|EEB33076.1| hypothetical protein DESPIG_02033 [Desulfovibrio piger ATCC 29098] Length = 354 Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust. Identities = 17/36 (47%), Positives = 24/36 (66%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54 +D R++VA+SGG DS + L R GYDV G+ + L Sbjct: 98 RDERILVALSGGKDSLALMLELSRQGYDVTGLHIDL 133 >gi|293402102|ref|ZP_06646241.1| GMP synthase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304494|gb|EFE45744.1| GMP synthase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 437 Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust. Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 9/78 (11%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD +V++A+SGGVDSSVVAALL + IG L + RKG + +V+ Sbjct: 141 KDKKVLLALSGGVDSSVVAALLIK----AIGKQLVCVHVNHGLMRKGESESVVEVFK--- 193 Query: 79 VCDTINVSHYVFDYEERF 96 + ++ + D ERF Sbjct: 194 --NQLDANLIYADASERF 209 >gi|225174283|ref|ZP_03728282.1| GMP synthase, large subunit [Dethiobacter alkaliphilus AHT 1] gi|225170068|gb|EEG78863.1| GMP synthase, large subunit [Dethiobacter alkaliphilus AHT 1] Length = 435 Score = 37.0 bits (84), Expect = 5.0, Method: Compositional matrix adjust. Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 9/81 (11%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D +V++A+SGGVDSSVVAALL + IG L + RK A +V+ + Sbjct: 140 DKKVLLALSGGVDSSVVAALLIK----AIGKQLVCVHVNHGLMRKNESEAVVEVFKNQLD 195 Query: 80 CDTINVSHYVFDYEERFRNAV 100 + I V D ERF N + Sbjct: 196 ANLIYV-----DASERFLNKL 211 >gi|292490681|ref|YP_003526120.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosococcus halophilus Nc4] gi|291579276|gb|ADE13733.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosococcus halophilus Nc4] Length = 347 Score = 37.0 bits (84), Expect = 5.1, Method: Compositional matrix adjust. Identities = 31/144 (21%), Positives = 62/144 (43%), Gaps = 26/144 (18%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGV-----------TLQLYNS-RKASKRKGS 66 K + V +SGG+DS + A +++ G V G+ T + N +K +KR + Sbjct: 3 KQRKAVALISGGLDSMLAAKVMQEQGIHVEGINFFTGFCVEGHTHAIRNKDKKRAKRNNA 62 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 A + + + ++ + + +++ V+ P Y G PC+DC + Sbjct: 63 LWAAEQ----------LGIKLHMVEVIDEYKDVVLNP---KYGYGAHLNPCLDC-KCFMV 108 Query: 127 SDLLSVTRQLGADVLATGHYIRSR 150 + L+ ++ G D + TG + R Sbjct: 109 TKALAWMKENGFDFIVTGEVVGQR 132 >gi|323703499|ref|ZP_08115145.1| argininosuccinate synthase [Desulfotomaculum nigrificans DSM 574] gi|323531490|gb|EGB21383.1| argininosuccinate synthase [Desulfotomaculum nigrificans DSM 574] Length = 401 Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust. Identities = 18/34 (52%), Positives = 26/34 (76%), Gaps = 1/34 (2%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQL 54 +VV+A SGG+D+S++ A LK + GYDVI +T L Sbjct: 3 KVVLAYSGGLDTSIIIAWLKENYGYDVIALTADL 36 >gi|134298155|ref|YP_001111651.1| argininosuccinate synthase [Desulfotomaculum reducens MI-1] gi|172044248|sp|A4J173|ASSY_DESRM RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|134050855|gb|ABO48826.1| argininosuccinate synthase [Desulfotomaculum reducens MI-1] Length = 401 Score = 37.0 bits (84), Expect = 5.3, Method: Compositional matrix adjust. Identities = 19/34 (55%), Positives = 26/34 (76%), Gaps = 1/34 (2%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQL 54 +VV+A SGG+D+SV+ A LK + GY+VI VT L Sbjct: 3 KVVLAYSGGLDTSVIIAWLKENYGYEVIAVTADL 36 >gi|331016004|gb|EGH96060.1| hypothetical protein PLA106_08375 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 415 Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 +++R VV + G S+ AALLKR G+DV+ + QL+ + S + C D + Sbjct: 6 REIRQVVVIGAGPAGSIAAALLKRQGHDVLIIERQLFP--RFSIGESLLCHCLDFVEEAG 63 Query: 79 VCDTINVSHY 88 + D +N + + Sbjct: 64 MLDAVNAAGF 73 >gi|213969468|ref|ZP_03397605.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] gi|301382680|ref|ZP_07231098.1| hypothetical protein PsyrptM_08612 [Pseudomonas syringae pv. tomato Max13] gi|302061617|ref|ZP_07253158.1| hypothetical protein PsyrptK_16650 [Pseudomonas syringae pv. tomato K40] gi|302130973|ref|ZP_07256963.1| hypothetical protein PsyrptN_06231 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213925839|gb|EEB59397.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] Length = 415 Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 +++R VV + G S+ AALLKR G+DV+ + QL+ + S + C D + Sbjct: 6 REIRQVVVIGAGPAGSIAAALLKRQGHDVLIIERQLFP--RFSIGESLLCHCLDFVEEAG 63 Query: 79 VCDTINVSHY 88 + D +N + + Sbjct: 64 MLDAVNAAGF 73 >gi|28872217|ref|NP_794836.1| hypothetical protein PSPTO_5104 [Pseudomonas syringae pv. tomato str. DC3000] gi|28855471|gb|AAO58531.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] Length = 415 Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust. Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 2/70 (2%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 +++R VV + G S+ AALLKR G+DV+ + QL+ + S + C D + Sbjct: 6 REIRQVVVIGAGPAGSIAAALLKRQGHDVLIIERQLFP--RFSIGESLLCHCLDFVEEAG 63 Query: 79 VCDTINVSHY 88 + D +N + + Sbjct: 64 MLDAVNAAGF 73 >gi|254373218|ref|ZP_04988707.1| NAD synthase [Francisella tularensis subsp. novicida GA99-3549] gi|151570945|gb|EDN36599.1| NAD synthase [Francisella novicida GA99-3549] Length = 249 Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 11/74 (14%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83 V+ +SGG+DS+V A+L + G + + L N++ QD+ DA + + + Sbjct: 33 VIGLSGGIDSAVAASLAVKTGLPITALILPSDNNQH-----------QDMQDALDLIEML 81 Query: 84 NVSHYVFDYEERFR 97 N+ HY + + Sbjct: 82 NIEHYTISIQPAYE 95 >gi|119511109|ref|ZP_01630227.1| hypothetical protein N9414_16856 [Nodularia spumigena CCY9414] gi|119464204|gb|EAW45123.1| hypothetical protein N9414_16856 [Nodularia spumigena CCY9414] Length = 234 Score = 37.0 bits (84), Expect = 5.6, Method: Compositional matrix adjust. Identities = 46/205 (22%), Positives = 84/205 (40%), Gaps = 36/205 (17%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +M+ V+ +SGG+DSS V K DGY+ ++ ++ ++ +R +++ A V Sbjct: 9 EMKAVILLSGGLDSSTVLYQAKADGYECHPIS---FDYQQRHRR--------ELHSAFLV 57 Query: 80 CDTIN-VSHYVFDYEERFR-------NAVIVPFASSY--AAGETPLPCVDCNRTVKFSDL 129 T+ V H V +++ R + +P S + P+ V T+ S Sbjct: 58 AQTLGVVKHQVVNFDLRLWGGSALTDETINLPQERSLDEMSQNIPVTYVPARNTIFLSFA 117 Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIM--CRPMDLERDQSYFLFATTQQQ--- 184 L + A R+Y+G + CRP ++ Q F T Q + Sbjct: 118 LGYAEAIAAQ----------RVYIGVNALDYSGYPDCRPDYIQAMQKVFQLGTKQGREGN 167 Query: 185 LCDLRFPLGDMKKESVRDLAREMGL 209 + PL D+KK + L ++G+ Sbjct: 168 PIKIVAPLIDLKKTEIIQLGNQLGV 192 >gi|11499151|ref|NP_070385.1| hypothetical protein AF1556 [Archaeoglobus fulgidus DSM 4304] gi|2649005|gb|AAB89691.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 274 Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust. Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 11/66 (16%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++A SGGVDSS +AA+ G +V+ VT+ S +++ +A+R+ + Sbjct: 28 KVLIAFSGGVDSSTLAAVCSNAGVEVLAVTVL-----------SSVSPRREMEEAKRIAE 76 Query: 82 TINVSH 87 + V H Sbjct: 77 ELGVRH 82 >gi|315656488|ref|ZP_07909377.1| argininosuccinate synthase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315493047|gb|EFU82649.1| argininosuccinate synthase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 390 Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 17/127 (13%) Query: 22 RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79 RVV+A SGG+D+SV +K + G D I V++ + G+D+ R R Sbjct: 4 RVVLAYSGGLDTSVAIGWMKDKLGVDTIAVSVDVGQ------------GGEDMDVIRQRA 51 Query: 80 CDTINVSHYVFDYEERFRNAVIVPF--ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 D V Y+ D ++ F +P A+ G+ PL +R + L+ +Q G Sbjct: 52 LDCGAVEAYIADAKDEFATEYCMPSLQANGLYQGQYPLVSA-LSRPLIAKHLVMAAKQFG 110 Query: 138 ADVLATG 144 A +A G Sbjct: 111 ATTMAHG 117 >gi|76801631|ref|YP_326639.1| GMP synthase subunit B [Natronomonas pharaonis DSM 2160] gi|121695540|sp|Q3IS14|GUAAB_NATPD RecName: Full=GMP synthase [glutamine-hydrolyzing] subunit B; AltName: Full=GMP synthetase gi|76557496|emb|CAI49076.1| GMP synthase (glutamine-hydrolyzing), subunit B [Natronomonas pharaonis DSM 2160] Length = 305 Score = 37.0 bits (84), Expect = 5.8, Method: Compositional matrix adjust. Identities = 51/197 (25%), Positives = 78/197 (39%), Gaps = 44/197 (22%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D V+A+SGGVDSS AAL Y+ IG L RKG +D +D Sbjct: 21 DANAVIALSGGVDSSTAAAL----AYEAIGDQLTPVYVDTGLMRKGETDQIRDTFD---Y 73 Query: 80 CDTINVSHYVFDYEERFRNA---VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 D++ + D +RF +A + P +A GE + + +V R + Sbjct: 74 MDSLR----IIDARDRFLDALSGITDPEEKRHAIGEQFI-----------REFETVARDV 118 Query: 137 GADVLATGHYIRSRLYV-GDDGKRRRIMCRP--MDLERDQSYFLFATTQQQLCDLRFPLG 193 AD L G R+ G + P +D E + P+ Sbjct: 119 DADYLVQGTIYPDRIESEGTIKSHHNVGGLPEVVDFE----------------GIVEPMR 162 Query: 194 DMKKESVRDLAREMGLD 210 D+ K+ VR++ARE+ L+ Sbjct: 163 DLYKDEVREVARELDLE 179 >gi|121997522|ref|YP_001002309.1| argininosuccinate synthase [Halorhodospira halophila SL1] gi|166219970|sp|A1WUZ5|ASSY_HALHL RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|121588927|gb|ABM61507.1| argininosuccinate synthase [Halorhodospira halophila SL1] Length = 403 Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust. Identities = 35/127 (27%), Positives = 56/127 (44%), Gaps = 18/127 (14%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+A SGG+D+SV+ L+ G +V+ T L G+++ ARR Sbjct: 6 KVVLAYSGGLDTSVILKWLEETYGCEVVTFTADL-------------GQGEELEPARRKA 52 Query: 81 DTINVSH-YVFDYEERFRNAVIVPF--ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + + YV D E F + P A++ GE L R + + + R+ G Sbjct: 53 EAFGIREIYVDDLREEFARDFVFPMFRANAVYEGEY-LLGTSIARPLIAKRQVEIARETG 111 Query: 138 ADVLATG 144 AD +A G Sbjct: 112 ADAVAHG 118 >gi|312128589|ref|YP_003993463.1| nad+ synthetase [Caldicellulosiruptor hydrothermalis 108] gi|311778608|gb|ADQ08094.1| NAD+ synthetase [Caldicellulosiruptor hydrothermalis 108] Length = 540 Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust. Identities = 37/140 (26%), Positives = 69/140 (49%), Gaps = 27/140 (19%) Query: 22 RVVVAMSGGVDSSVVAAL----LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 + VV +SGG+DSSVV L L R+ +V+GV++ SR +S+ + DA+ Sbjct: 287 KAVVGLSGGIDSSVVCCLAVEALGRE--NVLGVSMP---SRYSSE--------HSIKDAK 333 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV---DCNRTVKFSDLLSVTR 134 + + + + ++ E+ FR + + ETPL + + ++ + L+ ++ Sbjct: 334 SLAENLGIEFRIYPIEDVFR-----AYLRMFNTSETPLQDLAEENIQARIRGNILMFISN 388 Query: 135 QLGADVLATGHYIRSRLYVG 154 + VL TG+ +S L VG Sbjct: 389 RENRLVLTTGN--KSELAVG 406 >gi|227875730|ref|ZP_03993858.1| argininosuccinate synthase [Mobiluncus mulieris ATCC 35243] gi|269976721|ref|ZP_06183697.1| argininosuccinate synthase [Mobiluncus mulieris 28-1] gi|227843672|gb|EEJ53853.1| argininosuccinate synthase [Mobiluncus mulieris ATCC 35243] gi|269935086|gb|EEZ91644.1| argininosuccinate synthase [Mobiluncus mulieris 28-1] Length = 411 Score = 37.0 bits (84), Expect = 6.1, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 15/126 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79 R+V+A SGG+D+SV +K +VI V++ G+D+ R R Sbjct: 5 RIVLAYSGGLDTSVAIGWMKEKLDVEVIAVSVDCGQ------------GGEDLQVIRQRA 52 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138 D V YV D ++ F N +P + E P V +R + L+ +Q GA Sbjct: 53 LDCGAVEAYVADAKDEFANDYCMPALRTNGLYEGKYPLVSALSRPLISKHLVMAAKQFGA 112 Query: 139 DVLATG 144 +A G Sbjct: 113 TTMAHG 118 >gi|160939548|ref|ZP_02086897.1| hypothetical protein CLOBOL_04441 [Clostridium bolteae ATCC BAA-613] gi|158437499|gb|EDP15262.1| hypothetical protein CLOBOL_04441 [Clostridium bolteae ATCC BAA-613] Length = 433 Score = 37.0 bits (84), Expect = 6.2, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 4/55 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 D +V++A+SGGVDSSVVAALL + IG L + RKG + DV+ Sbjct: 138 DRKVLLALSGGVDSSVVAALLIK----AIGKQLTCVHVNHGLMRKGESESVIDVF 188 >gi|306819006|ref|ZP_07452723.1| argininosuccinate synthase [Mobiluncus mulieris ATCC 35239] gi|307700340|ref|ZP_07637380.1| argininosuccinate synthase [Mobiluncus mulieris FB024-16] gi|304648199|gb|EFM45507.1| argininosuccinate synthase [Mobiluncus mulieris ATCC 35239] gi|307614551|gb|EFN93780.1| argininosuccinate synthase [Mobiluncus mulieris FB024-16] Length = 411 Score = 37.0 bits (84), Expect = 6.3, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 54/126 (42%), Gaps = 15/126 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79 R+V+A SGG+D+SV +K +VI V++ G+D+ R R Sbjct: 5 RIVLAYSGGLDTSVAIGWMKEKLDVEVIAVSVDCGQ------------GGEDLQVIRQRA 52 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138 D V YV D ++ F N +P + E P V +R + L+ +Q GA Sbjct: 53 LDCGAVEAYVADAKDEFANDYCMPALRTNGLYEGKYPLVSALSRPLISKHLVMAAKQFGA 112 Query: 139 DVLATG 144 +A G Sbjct: 113 TTMAHG 118 >gi|56708321|ref|YP_170217.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp. tularensis SCHU S4] gi|89256074|ref|YP_513436.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp. holarctica LVS] gi|110670792|ref|YP_667349.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp. tularensis FSC198] gi|115314550|ref|YP_763273.1| NAD(+) synthase (glutamine-hydrolyzing) [Francisella tularensis subsp. holarctica OSU18] gi|167009801|ref|ZP_02274732.1| NAD(+) synthase (glutamine-hydrolyzing) [Francisella tularensis subsp. holarctica FSC200] gi|187931797|ref|YP_001891782.1| NAD+ synthetase [Francisella tularensis subsp. mediasiatica FSC147] gi|224457441|ref|ZP_03665914.1| NAD+ synthetase [Francisella tularensis subsp. tularensis MA00-2987] gi|254367407|ref|ZP_04983433.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp. holarctica 257] gi|254369082|ref|ZP_04985094.1| hypothetical protein FTAG_00010 [Francisella tularensis subsp. holarctica FSC022] gi|254370804|ref|ZP_04986809.1| NAD synthase [Francisella tularensis subsp. tularensis FSC033] gi|254875141|ref|ZP_05247851.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp. tularensis MA00-2987] gi|224510802|pdb|3FIU|A Chain A, Structure Of Nmn Synthetase From Francisella Tularensis gi|224510803|pdb|3FIU|B Chain B, Structure Of Nmn Synthetase From Francisella Tularensis gi|224510804|pdb|3FIU|C Chain C, Structure Of Nmn Synthetase From Francisella Tularensis gi|224510805|pdb|3FIU|D Chain D, Structure Of Nmn Synthetase From Francisella Tularensis gi|56604813|emb|CAG45892.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp. tularensis SCHU S4] gi|89143905|emb|CAJ79124.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp. holarctica LVS] gi|110321125|emb|CAL09275.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp. tularensis FSC198] gi|115129449|gb|ABI82636.1| NAD(+) synthase (glutamine-hydrolyzing) [Francisella tularensis subsp. holarctica OSU18] gi|134253223|gb|EBA52317.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp. holarctica 257] gi|151569047|gb|EDN34701.1| NAD synthase [Francisella tularensis subsp. tularensis FSC033] gi|157122032|gb|EDO66172.1| hypothetical protein FTAG_00010 [Francisella tularensis subsp. holarctica FSC022] gi|187712706|gb|ACD31003.1| NAD+ synthetase [Francisella tularensis subsp. mediasiatica FSC147] gi|254841140|gb|EET19576.1| NH(3)-dependent NAD(+) synthetase [Francisella tularensis subsp. tularensis MA00-2987] gi|282159552|gb|ADA78943.1| NAD(+) synthase (glutamine-hydrolyzing) [Francisella tularensis subsp. tularensis NE061598] Length = 249 Score = 36.6 bits (83), Expect = 6.5, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 11/74 (14%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83 V+ +SGG+DS+V A+L + G + L N++ QD+ DA + + + Sbjct: 33 VIGLSGGIDSAVAASLAVKTGLPTTALILPSDNNQH-----------QDMQDALELIEML 81 Query: 84 NVSHYVFDYEERFR 97 N+ HY + + Sbjct: 82 NIEHYTISIQPAYE 95 >gi|156502091|ref|YP_001428156.1| NAD+ synthetase [Francisella tularensis subsp. holarctica FTNF002-00] gi|290954539|ref|ZP_06559160.1| NAD+ synthetase [Francisella tularensis subsp. holarctica URFT1] gi|295312055|ref|ZP_06802870.1| NAD+ synthetase [Francisella tularensis subsp. holarctica URFT1] gi|156252694|gb|ABU61200.1| NAD+ synthetase [Francisella tularensis subsp. holarctica FTNF002-00] Length = 249 Score = 36.6 bits (83), Expect = 6.6, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 11/74 (14%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83 V+ +SGG+DS+V A+L + G + L N++ QD+ DA + + + Sbjct: 33 VIGLSGGIDSAVAASLAVKTGLPTTALILPSDNNQH-----------QDMQDALELIEML 81 Query: 84 NVSHYVFDYEERFR 97 N+ HY + + Sbjct: 82 NIEHYTISIQPAYE 95 >gi|16332015|ref|NP_442743.1| ExsB protein [Synechocystis sp. PCC 6803] gi|1001327|dbj|BAA10814.1| ExsB protein [Synechocystis sp. PCC 6803] Length = 271 Score = 36.6 bits (83), Expect = 6.6, Method: Compositional matrix adjust. Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR 58 VV +SGG+DS+ VAA+ KR+GY VI ++ Y R Sbjct: 44 AVVLLSGGLDSATVAAIAKREGYRVIALSFN-YGQR 78 >gi|289207540|ref|YP_003459606.1| argininosuccinate synthase [Thioalkalivibrio sp. K90mix] gi|288943171|gb|ADC70870.1| argininosuccinate synthase [Thioalkalivibrio sp. K90mix] Length = 407 Score = 36.6 bits (83), Expect = 6.6, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 18/127 (14%) Query: 22 RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RVV+A SGG+D+SV+ L+ + G +VI T L G++V AR Sbjct: 7 RVVLAYSGGLDTSVILKWLEDQYGCEVITFTADL-------------GQGEEVEPARAKA 53 Query: 81 DTINVSH-YVFDYEERFRNAVIVPF--ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + + V Y+ D E F + P A++ GE L R + ++ + + G Sbjct: 54 EALGVKQIYIEDLRETFVRDYVFPMFRANTIYEGEY-LLGTSIARPLIARRMVEIAEETG 112 Query: 138 ADVLATG 144 AD +A G Sbjct: 113 ADAIAHG 119 >gi|218782480|ref|YP_002433798.1| hypothetical protein Dalk_4652 [Desulfatibacillum alkenivorans AK-01] gi|218763864|gb|ACL06330.1| protein of unknown function DUF814 [Desulfatibacillum alkenivorans AK-01] Length = 331 Score = 36.6 bits (83), Expect = 6.6, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 20/133 (15%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K + + SGG+DS + A +LK G +V ++ + + RK S G + Sbjct: 6 KKLSALGLSSGGLDSILSALVLKEQGIEVSWISFETPFFSADNARKASADTGIPL----- 60 Query: 79 VCDTINVSHYVF-DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 ++ Y+ DY E N + Y G+ PC+DC+ + F V +++G Sbjct: 61 ------ITRYILDDYLEMLLNP-----PAGY--GKNMNPCMDCH-ALMFRLAHQVMQEIG 106 Query: 138 ADVLATGHYIRSR 150 AD L +G + R Sbjct: 107 ADFLFSGEVLGQR 119 >gi|86741855|ref|YP_482255.1| argininosuccinate synthase [Frankia sp. CcI3] gi|119361276|sp|Q2J866|ASSY_FRASC RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|86568717|gb|ABD12526.1| argininosuccinate synthase [Frankia sp. CcI3] Length = 400 Score = 36.6 bits (83), Expect = 6.6, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 15/126 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RVV+A SGG+D+SV + + G DV+ + + + G+D+ R+ Sbjct: 4 RVVLAYSGGLDTSVAIGWIGAETGADVVALAVDVGQ------------GGEDLEAIRQRA 51 Query: 81 DTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138 T V V D E F + + P S A P + +R V L++ R+ GA Sbjct: 52 LTCGAVESIVVDAREEFAESFVAPAIKSNALYMDRYPLISSLSRPVIVRHLVAAAREHGA 111 Query: 139 DVLATG 144 D +A G Sbjct: 112 DAIAHG 117 >gi|224372660|ref|YP_002607032.1| NAD+ synthetase [Nautilia profundicola AmH] gi|223589516|gb|ACM93252.1| NAD+ synthetase [Nautilia profundicola AmH] Length = 278 Score = 36.6 bits (83), Expect = 6.7, Method: Compositional matrix adjust. Identities = 47/206 (22%), Positives = 78/206 (37%), Gaps = 59/206 (28%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83 + +SGG+DS+VVA L K+ L ++ KA + V DA ++C+ Sbjct: 43 ICGLSGGIDSAVVAVLAKK----------ALGDNFKAFLLPSQFSSKSSVEDALKLCEKF 92 Query: 84 NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD------LLSVTRQLG 137 ++ H I P ++Y P D R FS L + +LG Sbjct: 93 DIDH---------ETISIAPLLNAY-------PIDDKVRFGNFSARMRMAILYDKSAELG 136 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A V+ T + +S L +G + T L P+GD+ K Sbjct: 137 ALVIGTSN--KSELLLG-----------------------YGTLFGDLASALNPIGDLYK 171 Query: 198 ESVRDLAREMGL--DIADKSDSQDIC 221 + + A +G+ +I +K S D+ Sbjct: 172 TEIFEFAEYLGVNEEIINKPPSADLW 197 >gi|254472503|ref|ZP_05085903.1| argininosuccinate synthase [Pseudovibrio sp. JE062] gi|211958786|gb|EEA93986.1| argininosuccinate synthase [Pseudovibrio sp. JE062] Length = 414 Score = 36.6 bits (83), Expect = 6.7, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 65/150 (43%), Gaps = 21/150 (14%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+A SGG+D+S++ L+ + G +V+ T L G+++ ARR Sbjct: 8 KVVLAYSGGLDTSIILKWLQAEYGCEVVTFTADL-------------GQGEELEPARRKA 54 Query: 81 DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + Y+ D E F + P + A E L R + L+ + + GA Sbjct: 55 ELLGIREIYIDDLREEFIRDFVFPMFRANAVYEGVYLLGTSIARPLISKRLIEIAEETGA 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMD 168 D +A G + G+D R + C ++ Sbjct: 115 DAVAHGATGK-----GNDQVRFELACYALN 139 >gi|163839539|ref|YP_001623944.1| argininosuccinate synthase [Renibacterium salmoninarum ATCC 33209] gi|187470631|sp|A9WQ90|ASSY_RENSM RecName: Full=Argininosuccinate synthase; AltName: Full=Citrulline--aspartate ligase gi|162953015|gb|ABY22530.1| argininosuccinate synthase [Renibacterium salmoninarum ATCC 33209] Length = 420 Score = 36.6 bits (83), Expect = 6.7, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 55/132 (41%), Gaps = 19/132 (14%) Query: 18 PKDMRVVVAMSGGVDSSVVAALL-KRDGYDVIGVTL---QLYNSRKASKRKGSCCAGQDV 73 P R+V+A SGG+D+SV + + G +VI V + Q S + +++ C Sbjct: 15 PVTDRIVLAYSGGLDTSVAIGWIGEATGAEVIAVAVDVGQGGESLETVRQRALGCGA--- 71 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSV 132 V YV D + F N +P + A + P V +R V L+ Sbjct: 72 -----------VEAYVADARDEFANEYCMPTLKANALYQGHYPLVSAISRPVIVKHLVKA 120 Query: 133 TRQLGADVLATG 144 R+ GA +A G Sbjct: 121 AREFGATTVAHG 132 >gi|110816273|sp|Q55468|QUEC_SYNY3 RecName: Full=7-cyano-7-deazaguanine synthase; AltName: Full=7-cyano-7-carbaguanine synthase; AltName: Full=PreQ(0) synthase; AltName: Full=Queuosine biosynthesis protein queC Length = 232 Score = 36.6 bits (83), Expect = 6.7, Method: Compositional matrix adjust. Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 27/199 (13%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VV +SGG+DS+ VAA+ KR+GY VI ++ Y R + + + Q + Sbjct: 5 AVVLLSGGLDSATVAAIAKREGYRVIALSFN-YGQRHDRELRAAADIVQALGIPEHFSIN 63 Query: 83 INVSHY----VFDYEERFRNAVIVP--FASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++++ + + D ++ + P S+Y G TV + LS+ Sbjct: 64 LDLAQWGGSSLTDRQQTLPQTGVEPDIIPSTYVPG---------RNTVFIALGLSLAEAK 114 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT---TQQQLCDLRFPLG 193 GA+ + G I + Y G CRP L Q ++ + + L PL Sbjct: 115 GAEAVFLG--INAIDYSGYPD------CRPEYLATYQQLAALSSKVGVEGRPIQLLAPLI 166 Query: 194 DMKKESVRDLAREMGLDIA 212 ++ K + A E+G+ IA Sbjct: 167 ELSKVDIVHKALELGVPIA 185 >gi|255020131|ref|ZP_05292201.1| Queuosine Biosynthesis QueC ATPase [Acidithiobacillus caldus ATCC 51756] gi|254970424|gb|EET27916.1| Queuosine Biosynthesis QueC ATPase [Acidithiobacillus caldus ATCC 51756] Length = 228 Score = 36.6 bits (83), Expect = 6.8, Method: Compositional matrix adjust. Identities = 50/202 (24%), Positives = 83/202 (41%), Gaps = 33/202 (16%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 +V +SGG+DS+ V A+ + G+ + ++ Y R A+ ++ AR++ + Sbjct: 8 AIVLLSGGLDSATVLAIAREAGFALHALSFD-YGQRHAT----------ELQFARKLAEA 56 Query: 83 INV-SHYVFDYEERFRNA-------VIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 V SH V + R A + VP AA P+ V T+ S L++ Sbjct: 57 AGVRSHRVLKMDLRIFGASALTDERIAVP--EEPAAAGIPITYVPARNTLFLSYALALAE 114 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT----QQQLCDLRF 190 LG + G + S+ Y G CRP ++R Q AT + Q + Sbjct: 115 VLGVLDIFIG--VNSQDYSGYPD------CRPEFIQRFQELAQVATVLGTEKGQKLSIHA 166 Query: 191 PLGDMKKESVRDLAREMGLDIA 212 PL + K + E+G+D A Sbjct: 167 PLQYLSKAQIIRRGLELGVDYA 188 >gi|296111878|ref|YP_003622260.1| argininosuccinate synthase [Leuconostoc kimchii IMSNU 11154] gi|295833410|gb|ADG41291.1| argininosuccinate synthase [Leuconostoc kimchii IMSNU 11154] Length = 408 Score = 36.6 bits (83), Expect = 6.9, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 23/33 (69%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL 54 ++V+A SGG+D+SV LK GYD+I V L + Sbjct: 4 KLVLAYSGGLDTSVAIPWLKDKGYDIIAVVLNV 36 >gi|307942550|ref|ZP_07657898.1| argininosuccinate synthase [Roseibium sp. TrichSKD4] gi|307774189|gb|EFO33402.1| argininosuccinate synthase [Roseibium sp. TrichSKD4] Length = 406 Score = 36.6 bits (83), Expect = 6.9, Method: Compositional matrix adjust. Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 16/126 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+A SGG+D+S++ L+ + G +V+ T L G+++ AR+ Sbjct: 8 KVVLAYSGGLDTSIILKWLQTEFGCEVVTFTADL-------------GQGEELEPARKKA 54 Query: 81 DTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + Y+ D E F + P + A E L R + L+ + + GA Sbjct: 55 EMLGIKEIYIDDLREEFIRDFVFPMFRANAVYEGVYLLGTSIARPLISKRLIEIAEETGA 114 Query: 139 DVLATG 144 D +A G Sbjct: 115 DAIAHG 120 >gi|152990287|ref|YP_001356009.1| glutamine-dependent NAD+ synthetase [Nitratiruptor sp. SB155-2] gi|151422148|dbj|BAF69652.1| glutamine-dependent NAD+ synthetase [Nitratiruptor sp. SB155-2] Length = 626 Score = 36.6 bits (83), Expect = 6.9, Method: Compositional matrix adjust. Identities = 20/80 (25%), Positives = 44/80 (55%), Gaps = 18/80 (22%) Query: 19 KDMRVVVAMSGGVDSSV-------VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 K+ ++V+ +SGG+DS++ V +L++ D++GV++ + + A+K+ Sbjct: 334 KETKLVIGVSGGLDSTLALLVCAKVCEILQKPYSDIVGVSMPGFGTTDATKK-------- 385 Query: 72 DVYDARRVCDTINVSHYVFD 91 AR++C+ I V++ D Sbjct: 386 ---SARKLCEAIGVTYKQID 402 >gi|224073526|ref|XP_002195318.1| PREDICTED: argininosuccinate synthetase 1 [Taeniopygia guttata] Length = 397 Score = 36.6 bits (83), Expect = 7.0, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVY 74 VV+A SGG+D+S + LK GYDV+ + +A++RK + VY Sbjct: 8 VVLAYSGGLDTSCILVWLKEQGYDVVAYLANIGQKEDFEAARRKALALGAKKVY 61 >gi|219852896|ref|YP_002467328.1| argininosuccinate synthase [Methanosphaerula palustris E1-9c] gi|219547155|gb|ACL17605.1| Argininosuccinate synthase [Methanosphaerula palustris E1-9c] Length = 395 Score = 36.6 bits (83), Expect = 7.2, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 12/123 (9%) Query: 23 VVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 V++A SGG+D+S+ LLK R GYD + VT+ + + A +D+ A + Sbjct: 6 VILAFSGGLDTSICVPLLKERYGYDRV-VTVAVDVGQTA----------EDINTATEKGN 54 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I H+ D ++RF + P + + E R + +++ + R GA + Sbjct: 55 LIADKHFTIDVKDRFVAEHLFPSIKANGSYEGYPMGTSLARPLIAEEIVKIARAEGATAV 114 Query: 142 ATG 144 A G Sbjct: 115 AHG 117 >gi|254425319|ref|ZP_05039037.1| asparagine synthase (glutamine-hydrolyzing) [Synechococcus sp. PCC 7335] gi|196192808|gb|EDX87772.1| asparagine synthase (glutamine-hydrolyzing) [Synechococcus sp. PCC 7335] Length = 496 Score = 36.6 bits (83), Expect = 7.2, Method: Compositional matrix adjust. Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 18/108 (16%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D+ V V +SGG+DSS+VAAL+K+ ++ ++ L +S D+ AR V Sbjct: 219 DVPVGVFLSGGLDSSIVAALMKQQVKELHSFSVGLSHS-------------PDLRAARLV 265 Query: 80 CDTINVSHYVFDYEERFRNAV---IVPFASSY--AAGETPLPCVDCNR 122 + + H+ + Y E V ++ + SY A + +PC +R Sbjct: 266 AEHLGTVHHEYVYSEAEMQTVLSDVIYYLESYDPALVRSAIPCYMVSR 313 >gi|119504421|ref|ZP_01626501.1| hypothetical protein MGP2080_01075 [marine gamma proteobacterium HTCC2080] gi|119459929|gb|EAW41024.1| hypothetical protein MGP2080_01075 [marine gamma proteobacterium HTCC2080] Length = 340 Score = 36.6 bits (83), Expect = 7.3, Method: Compositional matrix adjust. Identities = 20/61 (32%), Positives = 32/61 (52%) Query: 90 FDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRS 149 F ++ F++ I F S Y GE L + C R S LL+ R++ AD+ A G+ +R Sbjct: 147 FVHKRYFKSGKISSFRSEYYVGEALLALLACYRITGDSILLNTVREVEADLAAEGYGVRE 206 Query: 150 R 150 + Sbjct: 207 Q 207 >gi|329957022|ref|ZP_08297590.1| GMP synthase domain protein [Bacteroides clarus YIT 12056] gi|328523779|gb|EGF50871.1| GMP synthase domain protein [Bacteroides clarus YIT 12056] Length = 435 Score = 36.6 bits (83), Expect = 7.3, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 9/77 (11%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D +V++A+SGGVDSSVVAALL + IG L + RKG A +++ + Sbjct: 140 DRKVLLALSGGVDSSVVAALLLK----AIGDNLVCVHVNHGLMRKGESEAVIEIFKNK-- 193 Query: 80 CDTINVSHYVFDYEERF 96 +N + D +RF Sbjct: 194 ---LNANLVYVDATDRF 207 >gi|212224868|ref|YP_002308104.1| ATPase [Thermococcus onnurineus NA1] gi|212009825|gb|ACJ17207.1| ATPase [Thermococcus onnurineus NA1] Length = 305 Score = 36.6 bits (83), Expect = 7.3, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 4/52 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL----YNSRKASKRKGSC 67 D RV+V +SGG DS+V A +LK+ GYD+ + + L Y+ + K C Sbjct: 49 DERVLVVVSGGKDSAVTAYVLKKLGYDIECLHINLGIGEYSEKSEEYAKRQC 100 >gi|255535292|ref|YP_003095663.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Flavobacteriaceae bacterium 3519-10] gi|255341488|gb|ACU07601.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Flavobacteriaceae bacterium 3519-10] Length = 178 Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust. Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%) Query: 248 LNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG 293 +G ++G H G + +GQR+ +GV PL+V+ +D +RV VG Sbjct: 42 FDGFLVGEHRGTSTFQLGQRKRIGVGGKSAPLYVIGIDDAENRVFVG 88 >gi|118576679|ref|YP_876422.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Cenarchaeum symbiosum A] gi|118195200|gb|ABK78118.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Cenarchaeum symbiosum A] Length = 336 Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust. Identities = 29/134 (21%), Positives = 59/134 (44%), Gaps = 11/134 (8%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 PK +VV +SGG+DS + ++++ G++V V ++ + G C ++ Sbjct: 3 EPKKKKVVALLSGGLDSQLAVKMMQKQGFEVSAVAIK---TPFCDFDCGRGCG----FEI 55 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + D + V+ + + + P + AG PC+DC R + F ++ Sbjct: 56 HKRADDLGVNLKTVYLGDEYIEMLKKP-KHGFGAGMN--PCIDC-RAMMFEAAKKHMDEI 111 Query: 137 GADVLATGHYIRSR 150 GA+ + +G + R Sbjct: 112 GAEFIISGEVVGQR 125 >gi|134301725|ref|YP_001121693.1| NAD+ synthetase [Francisella tularensis subsp. tularensis WY96-3418] gi|134049502|gb|ABO46573.1| NAD+ synthetase [Francisella tularensis subsp. tularensis WY96-3418] Length = 249 Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 11/66 (16%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83 V+ +SGG+DS+V A+L + G + L N++ QD+ DA + + + Sbjct: 33 VIGLSGGIDSAVAASLAVKTGLPTTALILPSDNNQH-----------QDMQDALELIEML 81 Query: 84 NVSHYV 89 N+ HY Sbjct: 82 NIEHYT 87 >gi|154249688|ref|YP_001410513.1| PP-loop domain-containing protein [Fervidobacterium nodosum Rt17-B1] gi|154153624|gb|ABS60856.1| PP-loop domain protein [Fervidobacterium nodosum Rt17-B1] Length = 323 Score = 36.6 bits (83), Expect = 7.9, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 31/51 (60%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63 D K+ +V+VA+S G DSS V LK+ GY+V G+ L++ A++R Sbjct: 40 DFKMFQKEDKVLVAVSSGKDSSAVLYALKKLGYNVEGLFLKMGRHTNAAER 90 >gi|260174366|ref|ZP_05760778.1| putative GMP synthase (glutamine-hydrolyzing) [Bacteroides sp. D2] gi|315922634|ref|ZP_07918874.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313696509|gb|EFS33344.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 434 Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust. Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 10/81 (12%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D +V++A+SGGVDSSVVAALL + IG L + RKG D V Sbjct: 140 DKKVLLALSGGVDSSVVAALLLK----AIGNNLVCVHVNHGLMRKGES------EDVVEV 189 Query: 80 CDTINVSHYVFDYEERFRNAV 100 + + + D +RF N + Sbjct: 190 FNQLKANLVYVDVTDRFLNKL 210 >gi|154174151|ref|YP_001409218.1| thiamine biosynthesis protein:ExsB [Campylobacter curvus 525.92] gi|112803489|gb|EAU00833.1| thiamine biosynthesis protein:ExsB [Campylobacter curvus 525.92] Length = 329 Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust. Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 21/134 (15%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ----LYNSRKASKRKGSCCAGQDVYDA 76 M+ + SGG+DS + ++ G +V+ + + + + A + + AG Sbjct: 1 MKALALFSGGLDSMLAMKIISDQGIEVVALYMDTGFGVDEDKHAVLERRANLAGAKF--- 57 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V D N Y+ D V F+ Y G+ PC+DC+ + F L++ + Sbjct: 58 -KVVDMRN--EYLRD----------VLFSPKYGYGKQFNPCIDCHGYM-FKTALNMLKSE 103 Query: 137 GADVLATGHYIRSR 150 GAD + TG + R Sbjct: 104 GADFIITGEVLGQR 117 >gi|11499188|ref|NP_070424.1| hypothetical protein AF1595 [Archaeoglobus fulgidus DSM 4304] gi|2648962|gb|AAB89651.1| conserved hypothetical protein [Archaeoglobus fulgidus DSM 4304] Length = 304 Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust. Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 22/130 (16%) Query: 22 RVVVAMSGGVDSSVVAALLK-----RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 R+ +A+SGG DS +A +L R + +T+ + A R + V A Sbjct: 50 RIAIALSGGKDSVTLAFVLNKLYGFRSDLEFFAITI---DEGIAGYRPPT------VEIA 100 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 R+V + + + H V +EE F + PC C K+ LL+ T R+ Sbjct: 101 RKVTEQLGMEHLVVSFEENFGMTL-----DEMVKRGDKKPCTYCGVFRKY--LLNRTARE 153 Query: 136 LGADVLATGH 145 +GA LATGH Sbjct: 154 MGATKLATGH 163 >gi|312876999|ref|ZP_07736973.1| exsB protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796230|gb|EFR12585.1| exsB protein [Caldicellulosiruptor lactoaceticus 6A] Length = 217 Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 30/194 (15%) Query: 25 VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84 + +SGGVDS+ + +K GY+V ++ LY + + +++ A++ C ++ Sbjct: 1 MVLSGGVDSTTLLYDVKSQGYEVFAISF-LYGQKHS----------KELEFAKKTCKLLS 49 Query: 85 VSHYVFD---YEERFRNAVIVP---FASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V H + D + E +A+ P Y T V NR + LLS++ Sbjct: 50 VPHKIVDISFFAELAPSALTTPDWNVPEGYYTDSTMKQTVVPNRNMV---LLSISAAYAI 106 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIM--CRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 + A +L+ G I CR +E ++ A +L P DMK Sbjct: 107 SLGA------KKLFYGAHAGDHPIYPDCRKEFVEAMKNALYLADYIG--LELEAPYVDMK 158 Query: 197 KESVRDLAREMGLD 210 KE + E+G+D Sbjct: 159 KEDILRRGLELGVD 172 >gi|224417967|ref|ZP_03655973.1| asparagine synthase (glutamine-hydrolyzing) [Helicobacter canadensis MIT 98-5491] gi|253827304|ref|ZP_04870189.1| asparagine synthase [Helicobacter canadensis MIT 98-5491] gi|313141510|ref|ZP_07803703.1| asparagine synthase [Helicobacter canadensis MIT 98-5491] gi|253510710|gb|EES89369.1| asparagine synthase [Helicobacter canadensis MIT 98-5491] gi|313130541|gb|EFR48158.1| asparagine synthase [Helicobacter canadensis MIT 98-5491] Length = 625 Score = 36.6 bits (83), Expect = 8.0, Method: Compositional matrix adjust. Identities = 18/38 (47%), Positives = 24/38 (63%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS 57 D+ V V +SGGVDSS+V A+LK GYD ++ S Sbjct: 259 DVNVGVCLSGGVDSSLVCAVLKESGYDFETFSISFMES 296 >gi|62258565|gb|AAX77805.1| unknown protein [synthetic construct] Length = 284 Score = 36.6 bits (83), Expect = 8.1, Method: Compositional matrix adjust. Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 11/74 (14%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83 V+ +SGG+DS+V A+L + G + L N++ QD+ DA + + + Sbjct: 59 VIGLSGGIDSAVAASLAVKTGLPTTALILPSDNNQH-----------QDMQDALELIEML 107 Query: 84 NVSHYVFDYEERFR 97 N+ HY + + Sbjct: 108 NIEHYTISIQPAYE 121 >gi|312792427|ref|YP_004025350.1| exsb protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179567|gb|ADQ39737.1| exsB protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 217 Score = 36.6 bits (83), Expect = 8.2, Method: Compositional matrix adjust. Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 30/194 (15%) Query: 25 VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84 + +SGGVDS+ + +K GY+V ++ LY + + +++ A++ C ++ Sbjct: 1 MVLSGGVDSTTLLYDVKSQGYEVFAISF-LYGQKHS----------KELEFAKKTCKLLS 49 Query: 85 VSHYVFD---YEERFRNAVIVP---FASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V H + D + E +A+ P Y T V NR + LLS++ Sbjct: 50 VPHKIVDISFFAELAPSALTTPDWNVPEGYYTDSTMKQTVVPNRNMV---LLSISAAYAI 106 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIM--CRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 + A +L+ G I CR +E ++ A +L P DMK Sbjct: 107 SLGA------KKLFYGAHAGDHPIYPDCRKEFVEAMKNALYLADYIG--LELEAPYVDMK 158 Query: 197 KESVRDLAREMGLD 210 KE + E+G+D Sbjct: 159 KEDILRRGLELGVD 172 >gi|300313858|ref|YP_003777950.1| NH(3)-dependent NAD(+) synthetase [Herbaspirillum seropedicae SmR1] gi|300076643|gb|ADJ66042.1| NH(3)-dependent NAD(+) synthetase protein [Herbaspirillum seropedicae SmR1] Length = 565 Score = 36.6 bits (83), Expect = 8.2, Method: Compositional matrix adjust. Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 22/138 (15%) Query: 22 RVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +VVV SGG+DS+V AL +V+ VT+ S S V D+ + Sbjct: 299 KVVVGSSGGIDSAVTIALAAEALGAQNVVAVTMPSVFSSAGS-----------VSDSETL 347 Query: 80 CDTINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 C + V+ H + D F + FA+++ A LP + V+ + L+ + Sbjct: 348 CQALGVTLFRHPIADLVREFEDG----FATAFGAPLRGLPLENLQARVRGAILMEYSNGY 403 Query: 137 GADVLATGHYIRSRLYVG 154 A +L TG+ +S + VG Sbjct: 404 DALLLTTGN--KSEISVG 419 >gi|322370893|ref|ZP_08045448.1| NH(3)-dependent NAD(+) synthetase [Haladaptatus paucihalophilus DX253] gi|320549570|gb|EFW91229.1| NH(3)-dependent NAD(+) synthetase [Haladaptatus paucihalophilus DX253] Length = 557 Score = 36.2 bits (82), Expect = 8.4, Method: Compositional matrix adjust. Identities = 46/190 (24%), Positives = 74/190 (38%), Gaps = 46/190 (24%) Query: 23 VVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 VVV +SGG+DSS+ AAL +V+GV + + AS+ DAR + Sbjct: 300 VVVGLSGGIDSSITAALAADALGPENVLGVGMPTRYTSDASE-----------IDARELA 348 Query: 81 DTINVSHYVFDYEERFR--NAVIVPFASSYAAGETP-LPCVDCNRTVKFSDLLSVTRQLG 137 + + + E F + P ETP + + ++ + L+++ + G Sbjct: 349 ENLGIDFLDLPIENTFEAFERELTPILD-----ETPGVTEENVQARIRATTLMAIANEQG 403 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 +LAT + RS L VG + T +C P+ D K Sbjct: 404 RLLLATSN--RSELAVG-----------------------YTTLYGDMCGALAPIADCPK 438 Query: 198 ESVRDLAREM 207 V DLAR + Sbjct: 439 TFVYDLARHL 448 >gi|312110082|ref|YP_003988398.1| NAD+ synthetase [Geobacillus sp. Y4.1MC1] gi|311215183|gb|ADP73787.1| NAD+ synthetase [Geobacillus sp. Y4.1MC1] Length = 246 Score = 36.2 bits (82), Expect = 8.5, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 13/72 (18%) Query: 24 VVAMSGGVDSSVVAALLKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VV +SGG+DS+VVA L+KR D +G+ + ++ K D+ DA +V ++ Sbjct: 25 VVGISGGIDSAVVAHLIKRAFPDNSLGLIMPCKSNPK------------DMEDALKVVES 72 Query: 83 INVSHYVFDYEE 94 + H++ D E Sbjct: 73 CGIKHFIIDLTE 84 >gi|295399358|ref|ZP_06809340.1| NAD+ synthetase [Geobacillus thermoglucosidasius C56-YS93] gi|294978824|gb|EFG54420.1| NAD+ synthetase [Geobacillus thermoglucosidasius C56-YS93] Length = 246 Score = 36.2 bits (82), Expect = 8.7, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 13/72 (18%) Query: 24 VVAMSGGVDSSVVAALLKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VV +SGG+DS+VVA L+KR D +G+ + ++ K D+ DA +V ++ Sbjct: 25 VVGISGGIDSAVVAHLIKRAFPDNSLGLIMPCKSNPK------------DMEDALKVVES 72 Query: 83 INVSHYVFDYEE 94 + H++ D E Sbjct: 73 CGIKHFIIDLTE 84 >gi|237712767|ref|ZP_04543248.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262409743|ref|ZP_06086281.1| GMP synthase domain-containing protein [Bacteroides sp. 2_1_22] gi|294645358|ref|ZP_06723069.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein [Bacteroides ovatus SD CC 2a] gi|298483134|ref|ZP_07001314.1| GMP synthase, C- domain protein [Bacteroides sp. D22] gi|229447179|gb|EEO52970.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262352396|gb|EEZ01498.1| GMP synthase domain-containing protein [Bacteroides sp. 2_1_22] gi|292639296|gb|EFF57603.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein [Bacteroides ovatus SD CC 2a] gi|295084597|emb|CBK66120.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit [Bacteroides xylanisolvens XB1A] gi|298270651|gb|EFI12232.1| GMP synthase, C- domain protein [Bacteroides sp. D22] Length = 435 Score = 36.2 bits (82), Expect = 8.8, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 9/79 (11%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D +V++A+SGGVDSSVVAALL + IG L + RKG +V+ + Sbjct: 140 DKKVLLALSGGVDSSVVAALLLK----AIGNNLVCVHVNHGLMRKGESEDVVEVFSNQLK 195 Query: 80 CDTINVSHYVFDYEERFRN 98 + I V D +RF N Sbjct: 196 ANLIYV-----DVTDRFLN 209 >gi|208779928|ref|ZP_03247272.1| NAD+ synthetase [Francisella novicida FTG] gi|208744383|gb|EDZ90683.1| NAD+ synthetase [Francisella novicida FTG] Length = 249 Score = 36.2 bits (82), Expect = 8.8, Method: Compositional matrix adjust. Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 11/65 (16%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83 V+ +SGG+DS+V A+L + G + L N++ QD+ DA + + + Sbjct: 33 VIGLSGGIDSAVAASLAVKTGLPTTALILPSDNNQH-----------QDMQDALELIEML 81 Query: 84 NVSHY 88 N+ HY Sbjct: 82 NIEHY 86 >gi|88855466|ref|ZP_01130130.1| argininosuccinate synthase [marine actinobacterium PHSC20C1] gi|88815373|gb|EAR25231.1| argininosuccinate synthase [marine actinobacterium PHSC20C1] Length = 399 Score = 36.2 bits (82), Expect = 8.8, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 15/126 (11%) Query: 22 RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79 RVV+A SGG+D+SV LK G +V+ + + + G+++ D R R Sbjct: 4 RVVLAYSGGLDTSVGIGWLKDATGKEVVALAIDVGQ------------GGENMDDIRQRA 51 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138 D V V D ++ F + ++P + A + P V +R V L + LGA Sbjct: 52 LDCGAVESIVIDAKDEFADDFLMPALKANALYQKRYPLVSALSRPVISRHLALTAKALGA 111 Query: 139 DVLATG 144 D +A G Sbjct: 112 DSVAHG 117 >gi|288957455|ref|YP_003447796.1| queuosine biosynthesis protein [Azospirillum sp. B510] gi|288909763|dbj|BAI71252.1| queuosine biosynthesis protein [Azospirillum sp. B510] Length = 242 Score = 36.2 bits (82), Expect = 9.0, Method: Compositional matrix adjust. Identities = 55/205 (26%), Positives = 83/205 (40%), Gaps = 36/205 (17%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VV +SGG+DS+ V A+ K +GY V ++ + Y R + + + ARRV Sbjct: 10 AVVLVSGGLDSTTVLAIAKAEGYRVNALSFR-YGQRHSVELEA----------ARRVVAA 58 Query: 83 INVS-HYVFDYEER------FRNAVIVPFASSYAAGET------PLPCVDCNRTVKFSDL 129 + V H + D + R +A+ VP S A E P+ V TV S Sbjct: 59 MGVERHVIADIDLRAFGGSALTDAIAVPKHDSAADLEAELGQGIPVTYVPARNTVFLSFA 118 Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 L+ LGA L G + + Y G CRP + ++ AT R Sbjct: 119 LAWAETLGASDLFIG--VNALDYSGYPD------CRPEYIAAFETLANLATKAGVEGGSR 170 Query: 190 F----PLGDMKKESVRDLAREMGLD 210 F PL + K ++ E+G+D Sbjct: 171 FRIHAPLMTLDKAAIVRRGLELGVD 195 >gi|301102819|ref|XP_002900496.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262101759|gb|EEY59811.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 305 Score = 36.2 bits (82), Expect = 9.0, Method: Compositional matrix adjust. Identities = 48/187 (25%), Positives = 77/187 (41%), Gaps = 34/187 (18%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCDT 82 VVA SGGVDSS+ AAL+ Q++ ++ A + + + + AR V Sbjct: 33 VVAFSGGVDSSLAAALV-----------FQVFPDTGAACIGRSAALSSVQLRQAREVASH 81 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I V + +E + S C C +T +S L V ++ Sbjct: 82 IGVPLWECHTDEAKLEGYVANQGKS---------CYYC-KTTLYSTLNQVAEFAWQEMQQ 131 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 G I+ LY G + + +DL R L A T+ ++ PL + K+ VRD Sbjct: 132 HGEEIKPVLYNGTNADDQ------LDLTR---VGLVAATEFEVVS---PLSGLTKQEVRD 179 Query: 203 LAREMGL 209 +A+ +GL Sbjct: 180 VAKYLGL 186 >gi|323705926|ref|ZP_08117497.1| NAD+ synthetase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534724|gb|EGB24504.1| NAD+ synthetase [Thermoanaerobacterium xylanolyticum LX-11] Length = 545 Score = 36.2 bits (82), Expect = 9.0, Method: Compositional matrix adjust. Identities = 36/137 (26%), Positives = 67/137 (48%), Gaps = 21/137 (15%) Query: 22 RVVVAMSGGVDSSVVAAL----LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 + VV +SGG+DS+V AL L R+ +V+GV++ S + SK DAR Sbjct: 291 KAVVGLSGGIDSAVTCALAVKALGRE--NVLGVSMPSRYSSEGSKD-----------DAR 337 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + +N+ + V E+ F++ + + G+ L + ++ + L+ ++ + G Sbjct: 338 DLAQNLNIEYRVIPIEDVFKSYISIFNKDGNIVGD--LAEENLQARIRGNYLMFISNREG 395 Query: 138 ADVLATGHYIRSRLYVG 154 VL TG+ +S + VG Sbjct: 396 HMVLTTGN--KSEIAVG 410 >gi|227488144|ref|ZP_03918460.1| argininosuccinate synthase [Corynebacterium glucuronolyticum ATCC 51867] gi|227541542|ref|ZP_03971591.1| argininosuccinate synthase [Corynebacterium glucuronolyticum ATCC 51866] gi|227092006|gb|EEI27318.1| argininosuccinate synthase [Corynebacterium glucuronolyticum ATCC 51867] gi|227182698|gb|EEI63670.1| argininosuccinate synthase [Corynebacterium glucuronolyticum ATCC 51866] Length = 401 Score = 36.2 bits (82), Expect = 9.2, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 56/127 (44%), Gaps = 17/127 (13%) Query: 22 RVVVAMSGGVDSSV-VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR-RV 79 RVV+A SGG+D+SV + L K+ G +V+ VT+ L G+D+ R R Sbjct: 4 RVVLAYSGGLDTSVAIPYLAKQTGGEVVAVTIDLGQ------------GGEDLETVRQRA 51 Query: 80 CDTINVSHYVFDYEERFRNAVIVPF--ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 D V V D + F VP A+ GE PL +R + L+ ++ G Sbjct: 52 LDCGAVEAIVVDARDEFAEEYCVPTIQANGMYMGEYPLLSA-ISRPLIVKHLVQAAKEHG 110 Query: 138 ADVLATG 144 ++ G Sbjct: 111 GTHVSHG 117 >gi|147921431|ref|YP_684755.1| ATPase [uncultured methanogenic archaeon RC-I] gi|110620151|emb|CAJ35429.1| predicted ATPase (PP-loop superfamily) [uncultured methanogenic archaeon RC-I] Length = 308 Score = 36.2 bits (82), Expect = 9.2, Method: Compositional matrix adjust. Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 13/127 (10%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + VAMSGG DS+V ++L D + S + + A+ +CD Sbjct: 50 IAVAMSGGKDSAVTLSIL----VDTFTTRSNIKFSAITVDEGIEGYRNESIPYAKELCDR 105 Query: 83 INVSHYVFDYEERFRNAV--IVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + V HYV ++E + + I+ A+ C C + + L R++GA+ Sbjct: 106 LGVPHYVVSFKEEIGHTLDDILSRERKEAS------CTYCG-VFRRTLLNRKAREIGANK 158 Query: 141 LATGHYI 147 LATGH + Sbjct: 159 LATGHNL 165 >gi|56421131|ref|YP_148449.1| NH(3)-dependent NAD+ synthetase [Geobacillus kaustophilus HTA426] gi|261418389|ref|YP_003252071.1| NAD+ synthetase [Geobacillus sp. Y412MC61] gi|319767652|ref|YP_004133153.1| NAD+ synthetase [Geobacillus sp. Y412MC52] gi|56380973|dbj|BAD76881.1| NH(3)-dependent NAD+ synthetase [Geobacillus kaustophilus HTA426] gi|261374846|gb|ACX77589.1| NAD+ synthetase [Geobacillus sp. Y412MC61] gi|317112518|gb|ADU95010.1| NAD+ synthetase [Geobacillus sp. Y412MC52] Length = 246 Score = 36.2 bits (82), Expect = 9.3, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 13/91 (14%) Query: 23 VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV +SGG+DS+VVA L+KR D +G+ + ++ K D+ DA +V Sbjct: 24 AVVGISGGIDSAVVAHLIKRAFPDDSLGLIMPCKSNPK------------DMEDALKVVK 71 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGE 112 + + H V D E R A A GE Sbjct: 72 SCGIRHLVIDLTEAHRTLFGAVEAELKAIGE 102 >gi|297529241|ref|YP_003670516.1| NAD+ synthetase [Geobacillus sp. C56-T3] gi|297252493|gb|ADI25939.1| NAD+ synthetase [Geobacillus sp. C56-T3] Length = 246 Score = 36.2 bits (82), Expect = 9.3, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 42/91 (46%), Gaps = 13/91 (14%) Query: 23 VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV +SGG+DS+VVA L+KR D +G+ + ++ K D+ DA +V Sbjct: 24 AVVGISGGIDSAVVAHLIKRAFPDDSLGLIMPCKSNPK------------DMEDALKVVK 71 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGE 112 + + H V D E R A A GE Sbjct: 72 SCGIRHLVIDLTEAHRTLFGAVEAELKAIGE 102 >gi|294807986|ref|ZP_06766763.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein [Bacteroides xylanisolvens SD CC 1b] gi|294444799|gb|EFG13489.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 450 Score = 36.2 bits (82), Expect = 9.4, Method: Compositional matrix adjust. Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 9/81 (11%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D +V++A+SGGVDSSVVAALL + IG L + RKG +V+ + Sbjct: 155 DKKVLLALSGGVDSSVVAALLLK----AIGNNLVCVHVNHGLMRKGESEDVVEVFSNQLK 210 Query: 80 CDTINVSHYVFDYEERFRNAV 100 + I V D +RF N + Sbjct: 211 ANLIYV-----DVTDRFLNKL 226 >gi|289191725|ref|YP_003457666.1| NAD+ synthetase [Methanocaldococcus sp. FS406-22] gi|288938175|gb|ADC68930.1| NAD+ synthetase [Methanocaldococcus sp. FS406-22] Length = 253 Score = 36.2 bits (82), Expect = 9.5, Method: Compositional matrix adjust. Identities = 49/200 (24%), Positives = 84/200 (42%), Gaps = 44/200 (22%) Query: 23 VVVAMSGGVDSSVVAAL-LKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 VVV +SGG+DSSV A L +K G D V+G+ + ++ +D+ A+ V Sbjct: 24 VVVGLSGGIDSSVTAYLCVKALGKDKVLGLIMPEKHTNP-----------RDIEHAKMVA 72 Query: 81 DTINVSHYVFDYEERFRNAVIVPF-ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + + + + D + ++ F A Y + D N + L + Sbjct: 73 ENLGIKYIISDITD-----ILKAFGAGGYVPTKEFDKMADGNLKARIRMCLLYYFANKYN 127 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +L G +S +YVG K I CD+R P+G++ K Sbjct: 128 LLVAGTSNKSEIYVGYGTKHGDIA----------------------CDIR-PIGNLFKTE 164 Query: 200 VRDLAREMGL--DIADKSDS 217 VR+LA+ +G+ +I +K S Sbjct: 165 VRELAKYLGVPKEIIEKPPS 184 >gi|222824480|ref|YP_002576054.1| hypothetical protein Cla_1498 [Campylobacter lari RM2100] gi|222539701|gb|ACM64802.1| conserved hypothetical protein [Campylobacter lari RM2100] Length = 327 Score = 36.2 bits (82), Expect = 9.7, Method: Compositional matrix adjust. Identities = 45/203 (22%), Positives = 77/203 (37%), Gaps = 39/203 (19%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY------NSRKASKRKGSCCAGQDVY 74 M+ + SGG+DS + L+ G +V + + + S +KR A ++ Sbjct: 1 MKALALFSGGLDSMLAIKLITSQGIEVKALNINIGFGGTSDKSEIIAKRAAMAGASFEMI 60 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVI--VPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 D RNA + V F+ Y G+ PC+DC+ F LS+ Sbjct: 61 DV--------------------RNAYLQEVLFSPQYGYGKHFNPCIDCH-AFMFKTALSM 99 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + A + TG + R +R M + L D+ + + +C PL Sbjct: 100 LKDENASFIITGEVVGQRPM----SQRNDAMAKVKKLALDEEDLIL----RPMCAKNLPL 151 Query: 193 GDMKKESVRDLAREMGLDIADKS 215 ++E D RE +I+ +S Sbjct: 152 TKPEREGWVD--REKLENISGRS 172 >gi|86160461|ref|YP_467246.1| thiamine biosynthesis protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85776972|gb|ABC83809.1| thiamine biosynthesis protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 351 Score = 36.2 bits (82), Expect = 9.8, Method: Compositional matrix adjust. Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 18/210 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQ-DVYDA 76 K + + +SGG+DS++ AL++ G +V V + + +RKG G +A Sbjct: 3 KQGKAIALISGGLDSTLALALVRGQGIEVKAVNFYTGFCITETQRRKGGRPDGTVPQNEA 62 Query: 77 RRVCDTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 R + V YV + + ++ P + G PCVDC R + Sbjct: 63 LRAAADLEVDIEYVDISGPGYFDMLVNP---RWGYGANANPCVDC-RVFMMRKAKEIMEA 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 GAD + TG + R +RR R ++ E L +L P Sbjct: 119 EGADFIFTGEVLGQR-----PKSQRRDTLRIIERESGLDGRLLRPLSAKLLPPTIP---- 169 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQ 225 +KE + D RE LDI+ + ++ + ++ Sbjct: 170 EKEGIVD--RERLLDISGRGRTRQMALAEE 197 >gi|114705909|ref|ZP_01438812.1| argininosuccinate synthase [Fulvimarina pelagi HTCC2506] gi|114538755|gb|EAU41876.1| argininosuccinate synthase [Fulvimarina pelagi HTCC2506] Length = 405 Score = 36.2 bits (82), Expect = 9.9, Method: Compositional matrix adjust. Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 17/131 (12%) Query: 18 PKDMR-VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 P+D++ VV+A SGG+D+S++ L+ + +V+ T L G+++ Sbjct: 4 PRDVKKVVLAYSGGLDTSIILKWLQTELNAEVVTFTADL-------------GQGEELGP 50 Query: 76 ARRVCDTINVSH-YVFDYEERFRNAVIVPFASSYAAGE-TPLPCVDCNRTVKFSDLLSVT 133 AR + V Y+ D E F + P + A E T L R + L+ + Sbjct: 51 AREKAERAGVKDIYIEDVREEFCRDFVFPMFRANAVYEGTYLLGTSIARPLISKRLVEIA 110 Query: 134 RQLGADVLATG 144 R+ GAD +A G Sbjct: 111 RETGADAIAHG 121 >gi|220932738|ref|YP_002509646.1| NH(3)-dependent NAD(+) synthetase [Halothermothrix orenii H 168] gi|219994048|gb|ACL70651.1| NH(3)-dependent NAD(+) synthetase [Halothermothrix orenii H 168] Length = 247 Score = 36.2 bits (82), Expect = 9.9, Method: Compositional matrix adjust. Identities = 47/190 (24%), Positives = 73/190 (38%), Gaps = 46/190 (24%) Query: 24 VVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VV MSGG+DS+V + L K+ + +G+ + ++S K D+ DAR V D Sbjct: 30 VVGMSGGIDSAVTSVLCKKAFKENTLGIIMPCHSSDK------------DLEDARLVADA 77 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 ++ + V D F N F +LL Q G D+ Sbjct: 78 FDIKYIVKDLGPVFDN---------------------------FIELLGADSQTGDDMAV 110 Query: 143 TGHYIRSRLYVGD---DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 I+ RL + R + D + + F D+ PLG + K Sbjct: 111 AN--IKPRLRMTTLYYYAARNNYLVVGTDNWSELTVGYFTKYGDGGVDIA-PLGRLVKTE 167 Query: 200 VRDLAREMGL 209 VR+LAR +G+ Sbjct: 168 VRELARYLGI 177 >gi|293369968|ref|ZP_06616535.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein [Bacteroides ovatus SD CMC 3f] gi|292634886|gb|EFF53408.1| GMP synthase (glutamine-hydrolyzing), C-terminal domain protein [Bacteroides ovatus SD CMC 3f] Length = 435 Score = 36.2 bits (82), Expect = 10.0, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 9/79 (11%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D +V++A+SGGVDSSVVAALL + IG L + RKG +V+ + Sbjct: 140 DKKVLLALSGGVDSSVVAALLLK----AIGNNLVCVHVNHGLMRKGESEDVAEVFSNQLK 195 Query: 80 CDTINVSHYVFDYEERFRN 98 + + V D +RF N Sbjct: 196 ANLVYV-----DVTDRFLN 209 >gi|152992854|ref|YP_001358575.1| ExsB family transcriptional regulator [Sulfurovum sp. NBC37-1] gi|167016454|sp|A6Q9Q9|QUEC_SULNB RecName: Full=7-cyano-7-deazaguanine synthase; AltName: Full=7-cyano-7-carbaguanine synthase; AltName: Full=PreQ(0) synthase; AltName: Full=Queuosine biosynthesis protein queC gi|151424715|dbj|BAF72218.1| transcriptional regulator, ExsB family [Sulfurovum sp. NBC37-1] Length = 222 Score = 36.2 bits (82), Expect = 10.0, Method: Compositional matrix adjust. Identities = 39/199 (19%), Positives = 81/199 (40%), Gaps = 25/199 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 + V +SGG+DS++ A + + +GY++I + Y R +K ++ R++ Sbjct: 4 KAVCIISGGMDSALSAKIAQEEGYEIIALHFN-YGQRTRNK---------ELECFRKITQ 53 Query: 82 TINVSHYV---FDYEERFRNAVIVPFASSYAAG----ETPLPCVDCNRTVKFSDLLSVTR 134 +N S D+ E+ + + + G P+ V + S ++ Sbjct: 54 ELNASESYEIDLDFFEQIGASALTDKSIDVPIGGLEEGVPVTYVPFRNGIFLSIAAAIAE 113 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 + GA+ L G V ++ CR +E+ Q T + +++ PL Sbjct: 114 KHGAEALFIG--------VVEEDSSGYPDCRESYIEQMQKAINLGTKDETNIEIKMPLVS 165 Query: 195 MKKESVRDLAREMGLDIAD 213 ++K + A E+G+ + D Sbjct: 166 LRKSQIVQKAIELGVPLED 184 >gi|134045274|ref|YP_001096760.1| NH(3)-dependent NAD(+) synthetase [Methanococcus maripaludis C5] gi|132662899|gb|ABO34545.1| NH(3)-dependent NAD(+) synthetase [Methanococcus maripaludis C5] Length = 258 Score = 36.2 bits (82), Expect = 10.0, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 81/200 (40%), Gaps = 44/200 (22%) Query: 23 VVVAMSGGVDSSVVAAL-LKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 VVV +SGG+DS++VA L +K G + V GV + NS ++ G + V Sbjct: 31 VVVGLSGGIDSALVAYLSVKALGKENVFGVIMPEKNSNPDDEKYG-----------KLVA 79 Query: 81 DTINVSHYVFDYEERFRNAVIVPF-ASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +T+ +++ VFD V+V F A Y G+ VD N + + Sbjct: 80 ETLGINYTVFDI-----TPVLVAFGAGGYVEGKEFDRRVDANLKPRIRMTEVYYHANKKN 134 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 L G +S +Y+G + T L +G++ K Sbjct: 135 YLVAGTSNKSEIYMG-----------------------YGTKYGDLGSDFLTIGNLFKTE 171 Query: 200 VRDLAREMGL--DIADKSDS 217 VR LA +G+ +I DK+ S Sbjct: 172 VRQLAGHVGVLKEIIDKAPS 191 Searching..................................................done Results from round 2 >gi|254780151|ref|YP_003064564.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter asiaticus str. psy62] gi|254039828|gb|ACT56624.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter asiaticus str. psy62] gi|255957544|dbj|BAH96607.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957840|dbj|BAH96814.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957850|dbj|BAH96823.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957860|dbj|BAH96832.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957870|dbj|BAH96841.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957880|dbj|BAH96850.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957890|dbj|BAH96859.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957900|dbj|BAH96868.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957910|dbj|BAH96877.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957920|dbj|BAH96886.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957930|dbj|BAH96895.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957940|dbj|BAH96904.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957950|dbj|BAH96913.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957960|dbj|BAH96922.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957970|dbj|BAH96931.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957980|dbj|BAH96940.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255957990|dbj|BAH96949.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255958000|dbj|BAH96958.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255958010|dbj|BAH96967.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255958020|dbj|BAH96976.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255958030|dbj|BAH96985.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255958040|dbj|BAH96994.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255958050|dbj|BAH97003.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255958060|dbj|BAH97012.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255958070|dbj|BAH97021.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255958080|dbj|BAH97030.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255958090|dbj|BAH97039.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255958100|dbj|BAH97048.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255958110|dbj|BAH97057.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|255958120|dbj|BAH97066.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Liberibacter asiaticus] gi|283362130|dbj|BAI65917.1| predicted tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Candidatus Liberibacter asiaticus] gi|283362140|dbj|BAI65926.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus Liberibacter asiaticus] gi|283362150|dbj|BAI65935.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus Liberibacter asiaticus] gi|283362160|dbj|BAI65944.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus Liberibacter asiaticus] gi|283362170|dbj|BAI65953.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus Liberibacter asiaticus] gi|283362180|dbj|BAI65962.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus Liberibacter asiaticus] gi|283362190|dbj|BAI65971.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus Liberibacter asiaticus] gi|283362200|dbj|BAI65980.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus Liberibacter asiaticus] gi|283362210|dbj|BAI65989.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus Liberibacter asiaticus] gi|283362220|dbj|BAI65998.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus Liberibacter asiaticus] gi|283362230|dbj|BAI66007.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) [Candidatus Liberibacter asiaticus] Length = 408 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 408/408 (100%), Positives = 408/408 (100%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA Sbjct: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC Sbjct: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT Sbjct: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA Sbjct: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV Sbjct: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA Sbjct: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM 408 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM Sbjct: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM 408 >gi|140063954|gb|ABO82466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Liberibacter asiaticus] Length = 408 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 407/408 (99%), Positives = 408/408 (100%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVT+QLYNSRKA Sbjct: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTVQLYNSRKA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC Sbjct: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT Sbjct: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA Sbjct: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV Sbjct: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA Sbjct: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM 408 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM Sbjct: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM 408 >gi|315122753|ref|YP_004063242.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496155|gb|ADR52754.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 398 Score = 533 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 326/392 (83%), Positives = 360/392 (91%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLD DKNPKDMRVVVAMSGGVDSS+VAALLKRDGYDV+GVTLQLYN K SKRKGSCC Sbjct: 1 MNSLDFDKNPKDMRVVVAMSGGVDSSIVAALLKRDGYDVVGVTLQLYNGGKESKRKGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQDVYDARRVCD I+V HYVFDYEERF NAVIVPFA++Y AGETPLPCVDCNRTVKF D Sbjct: 61 AGQDVYDARRVCDAIDVPHYVFDYEERFHNAVIVPFANAYIAGETPLPCVDCNRTVKFLD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LLSV R+LGADVLATGHYIRSR +VG DG RRRIMCRP+D ERDQSYFLFATTQQQLCDL Sbjct: 121 LLSVMRRLGADVLATGHYIRSRFHVGADGVRRRIMCRPVDSERDQSYFLFATTQQQLCDL 180 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG+MKKESVRDLAREM L++ADKSDSQDICFVQ+GKYFD+VK++++ I+LEG+IVHL Sbjct: 181 RFPLGEMKKESVRDLAREMKLEVADKSDSQDICFVQKGKYFDIVKKLSSDISLEGEIVHL 240 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +GQ+LGRHNGIINYTIGQRRGLG+A +PLFVVYLDK SRVIVGPRE+LEV RIYLREI Sbjct: 241 SGQVLGRHNGIINYTIGQRRGLGIAASDPLFVVYLDKQGSRVIVGPREALEVRRIYLREI 300 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGDG FED VVDGFKCF KIRSSQDPV VFV+R+D GVYVDFE SE GVA+GQACVFY Sbjct: 301 NWLGDGSFEDVVVDGFKCFAKIRSSQDPVSVFVKRDDSGVYVDFENSEEGVAAGQACVFY 360 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 +SDSN+AR+LGGG IS SKRSD VE+SL S++ Sbjct: 361 SSDSNDARILGGGFISCSKRSDKVEKSLFSIM 392 >gi|222149632|ref|YP_002550589.1| tRNA-specific 2-thiouridylase MnmA [Agrobacterium vitis S4] gi|221736614|gb|ACM37577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Agrobacterium vitis S4] Length = 402 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 237/395 (60%), Positives = 295/395 (74%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +N+LD DK P+D RVVVAMSGGVDSSVVA +LKR+GYDV+G+TLQLY+ A R GSC Sbjct: 4 PVNTLDFDKRPEDTRVVVAMSGGVDSSVVAGILKREGYDVLGITLQLYDHGAAVHRAGSC 63 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 CAGQD+ DARRVC+T+ + HYV DYE+RFR+ VI PF SY AGETP+PCV CN+TVKF+ Sbjct: 64 CAGQDIDDARRVCETLGIPHYVLDYEQRFRDTVINPFMDSYIAGETPIPCVACNQTVKFA 123 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL+ R+LGAD LATGHYIRSR + R + RP+D ERDQSYFLFATTQ+Q+ Sbjct: 124 DLLATARELGADALATGHYIRSRATPLPNDPGHRALFRPIDSERDQSYFLFATTQEQIDY 183 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 LRFPLG + K R LA +MGL +A K+DSQDICFV QGKY D++ ++ AL GDIVH Sbjct: 184 LRFPLGGLSKAETRKLAEDMGLVVAQKADSQDICFVPQGKYADIINKLKPNAALSGDIVH 243 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 L+G++LG+H GI++YTIGQR+GLGVA GEPL+VVYLD S RVIVGPRE+LE R+YLR+ Sbjct: 244 LDGRVLGQHEGILHYTIGQRKGLGVATGEPLYVVYLDARSRRVIVGPREALETRRVYLRD 303 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 INWLGD ED GF CF K+RS++ P P + ++ G+YVD + E GVA GQACV Sbjct: 304 INWLGDRAIEDEASGGFACFAKVRSTRPPAPAHLHADETGIYVDLDMGEAGVAPGQACVL 363 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402 Y+ + +ARV GGG I S+R E L +++ Sbjct: 364 YSGEGADARVYGGGFIERSERQAEAETFLKALLAG 398 >gi|295399328|ref|ZP_06809310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus thermoglucosidasius C56-YS93] gi|294978794|gb|EFG54390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus thermoglucosidasius C56-YS93] Length = 371 Score = 524 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 142/382 (37%), Positives = 204/382 (53%), Gaps = 23/382 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K PKD RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MNKPPKDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +GAD +ATGHY R G+ + R +D ++DQ+YFL Q+QL + FPLG Sbjct: 118 LSIGADYVATGHYARIEYRDGE-----YKLLRGVDQKKDQTYFLNQLGQEQLSKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR +A++ GL A K DS ICF+ + + + A G + L+G++ Sbjct: 173 HLEKAQVRQIAKDAGLATATKKDSTGICFIGERDFKKFLSSYLP--AQPGIMQTLDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP FVV + + + V E L + +N Sbjct: 231 GKHDGVMYYTIGQRHGLGIGGNGEPWFVVGKNVKENILYVAQGFNNEYLYSTSLIATNVN 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368 W+ D F+C K R Q + V V +DD V V F++ V GQA VFY Sbjct: 291 WVSDR----KPPKSFRCTAKFRYRQPDIGVTVHVMDDDKVEVIFDEPVRAVTPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSD 390 + LGGG I R+ Sbjct: 347 NGE----ECLGGGTIDKVFRNG 364 >gi|312110111|ref|YP_003988427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus sp. Y4.1MC1] gi|311215212|gb|ADP73816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus sp. Y4.1MC1] Length = 371 Score = 524 bits (1350), Expect = e-146, Method: Composition-based stats. Identities = 142/382 (37%), Positives = 204/382 (53%), Gaps = 23/382 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K PKD RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MNKPPKDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +GAD +ATGHY R G+ + R +D ++DQ+YFL Q+QL + FPLG Sbjct: 118 LSIGADYVATGHYARIEYRDGE-----YKLLRGVDQKKDQTYFLNQLGQEQLSKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR +A++ GL A K DS ICF+ + + + A G + L+G++ Sbjct: 173 HLEKAQVRQIAKDAGLATATKKDSTGICFIGERDFKKFLSSYLP--AQPGIMQTLDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP FVV + + + V E L + +N Sbjct: 231 GKHDGVMYYTIGQRHGLGIGGNGEPWFVVGKNVKENILYVAQGFNNEYLYSTSLIATNVN 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368 W+ D F+C K R Q + V V +DD V V F++ V GQA VFY Sbjct: 291 WVSDR----KPPKSFRCTAKFRYRQPDIGVTVHVMDDDKVEVVFDEPVRAVTPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSD 390 + LGGG I R+ Sbjct: 347 NGE----ECLGGGTIDKVFRNG 364 >gi|311031538|ref|ZP_07709628.1| tRNA-specific 2-thiouridylase MnmA [Bacillus sp. m3-13] Length = 371 Score = 523 bits (1348), Expect = e-146, Method: Composition-based stats. Identities = 139/382 (36%), Positives = 207/382 (54%), Gaps = 23/382 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K PKD RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MTKAPKDTRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 NDVIRVCNQIGIPYYAVNFEKQYWDKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY + G+ M R +D +DQ+YFL Q+QL + FP+G Sbjct: 118 LDLGADYLATGHYAQVEFRDGE-----YKMLRGLDENKDQTYFLNQLGQEQLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR++A+ GL A K DS ICF+ + + + + A G+++ ++G++ Sbjct: 173 NIEKSEVREIAKRAGLATATKKDSTGICFIGERNFKEFLSGYLP--AQPGNMLTMDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P FV+ D + + VG E L I +I+ Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGSGDPWFVIGKDLEKNVLYVGQSFHNELLYSDSITATDIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + + DG C K R Q V + D+ V V F++ + GQA VFY Sbjct: 291 WVSN----NPPADGTVCTAKFRYRQADNKVTIQHLEDNKVKVIFDEPVRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSD 390 D LGGG I +++ Sbjct: 347 NGD----ECLGGGTIDHVFKNN 364 >gi|190893264|ref|YP_001979806.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein [Rhizobium etli CIAT 652] gi|229486418|sp|B3PYW4|MNMA_RHIE6 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|190698543|gb|ACE92628.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein [Rhizobium etli CIAT 652] Length = 408 Score = 522 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 233/399 (58%), Positives = 295/399 (73%), Gaps = 1/399 (0%) Query: 6 ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65 A LN+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+ A R G Sbjct: 7 APPLNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAG 66 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 SCCAGQD+ DARRVC+T+ + HYV DYE+RFR VI PFA SY AGETP+PCV CN+TVK Sbjct: 67 SCCAGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVK 126 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F+DLL+ ++LGAD LATGHYIRSR + RR + RP D +RDQSYFLFATTQ+Q+ Sbjct: 127 FADLLATAKELGADALATGHYIRSRPNPSPEHPGRRALFRPADADRDQSYFLFATTQEQI 186 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 LRFPLG + K R LA EMGL +A K+DSQDICFV QGKY D++ ++ AL G+I Sbjct: 187 DYLRFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEI 246 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 VHL+G++LG H GI+++TIGQRRG+G+A GEPL+VVYLD S RVIVGP+E+LE HR+YL Sbjct: 247 VHLDGRVLGTHEGILHFTIGQRRGIGIATGEPLYVVYLDARSRRVIVGPKEALETHRVYL 306 Query: 306 REINWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 R++NWLGD +A +GF C+ K+RS++ P P + + G YVD E G+A GQA Sbjct: 307 RDVNWLGDETLGEAASGEGFACYAKVRSTRAPAPAVLHVDATGTYVDLTVGEAGIAPGQA 366 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403 C Y++ ++ARV GGG I S+R A E SL +++ Sbjct: 367 CALYSAPGDDARVFGGGFIERSEREPAAEASLKALLASP 405 >gi|153008906|ref|YP_001370121.1| tRNA-specific 2-thiouridylase MnmA [Ochrobactrum anthropi ATCC 49188] gi|166235072|sp|A6WZ88|MNMA_OCHA4 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|151560794|gb|ABS14292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ochrobactrum anthropi ATCC 49188] Length = 398 Score = 520 bits (1341), Expect = e-145, Method: Composition-based stats. Identities = 230/396 (58%), Positives = 290/396 (73%), Gaps = 5/396 (1%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 LNSLDL P+D RVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+ A R GSC Sbjct: 2 SLNSLDLPGKPEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSC 61 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 CAGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+ Sbjct: 62 CAGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFA 121 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL R LGAD LATGHYIRSR R + RP+D +RDQSYFLFATTQ+Q+ Sbjct: 122 DLLQTARDLGADALATGHYIRSRAN-----GAHRALYRPVDTDRDQSYFLFATTQEQIDY 176 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 LRFPLG + K VR++A EMGL +A K DSQDICFV QGKY D++ ++ A GDIVH Sbjct: 177 LRFPLGHLPKAQVREIAEEMGLTVAKKQDSQDICFVPQGKYSDIISKLKPEAANPGDIVH 236 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 ++G+ LGRH+GI++YT+GQRRG+GVA GEPL+VV+LD ++RVIVGPRE+LE H+++LR+ Sbjct: 237 IDGRTLGRHDGIVHYTVGQRRGIGVATGEPLYVVHLDAANARVIVGPREALETHKVFLRD 296 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 INWLGD D G + F K+RS++ P P ++ D +V+ E G+A GQACV Sbjct: 297 INWLGDAPISDLPEGGMEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVL 356 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403 Y+ +SN ARV GGG I S+R EE L ++ + Sbjct: 357 YSDESNTARVFGGGFIGRSEREPQAEEMLRRLVANT 392 >gi|306844591|ref|ZP_07477178.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Brucella sp. BO1] gi|306275035|gb|EFM56798.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Brucella sp. BO1] Length = 398 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 230/395 (58%), Positives = 290/395 (73%), Gaps = 5/395 (1%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 LNSLDL P+DMRVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+ A R GSC Sbjct: 2 SLNSLDLPGKPEDMRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSC 61 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 CAGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+ Sbjct: 62 CAGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFA 121 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL R LGAD LATGHYIRSR R + RP+D +RDQSYFLFATTQ+Q+ Sbjct: 122 DLLQTARDLGADALATGHYIRSRAN-----GAHRALYRPVDTDRDQSYFLFATTQEQIDY 176 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 LRFPLG + K VR++A E+GL +A K DSQDICFV QGKY D++ R+ A GDIVH Sbjct: 177 LRFPLGHLPKAQVREIAEELGLTVAKKQDSQDICFVPQGKYSDIISRLKPEAANPGDIVH 236 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 ++G+ LGRH+GI++YT+GQRRG+GVA GE L+VV+LD ++RVIVGPRE+LE H+++LR+ Sbjct: 237 IDGRTLGRHDGIVHYTVGQRRGIGVATGEALYVVHLDAANARVIVGPREALETHKVFLRD 296 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 +NWLGD D G + F K+RS++ P P ++ D +V+ E G+A GQACV Sbjct: 297 VNWLGDTPIADLPKSGMEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVL 356 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402 Y+ DSN ARV GGG I S+R EE L ++ + Sbjct: 357 YSDDSNAARVFGGGFIGRSEREPQAEEMLRRLMAN 391 >gi|239832470|ref|ZP_04680799.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ochrobactrum intermedium LMG 3301] gi|239824737|gb|EEQ96305.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ochrobactrum intermedium LMG 3301] Length = 411 Score = 520 bits (1339), Expect = e-145, Method: Composition-based stats. Identities = 230/396 (58%), Positives = 290/396 (73%), Gaps = 5/396 (1%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 LNSLDL P+D RVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+ A R GSC Sbjct: 15 SLNSLDLPGKPEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSC 74 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 CAGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+ Sbjct: 75 CAGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFA 134 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL R LGAD LATGHYIRSR R + RP+D +RDQSYFLFATTQ+Q+ Sbjct: 135 DLLQTARDLGADALATGHYIRSRAN-----GAHRALYRPVDTDRDQSYFLFATTQEQIDY 189 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 LRFPLG + K VR++A EMGL +A K DSQDICFV QGKY D++ ++ A GDIVH Sbjct: 190 LRFPLGHLPKAQVREIAEEMGLTVAKKQDSQDICFVPQGKYSDIISKLKPEAANPGDIVH 249 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 ++G+ LGRH+GI++YT+GQRRG+GVA GEPL+VV+LD ++RVIVGPRE+LE H+++LR+ Sbjct: 250 IDGRTLGRHDGIVHYTVGQRRGIGVATGEPLYVVHLDAANARVIVGPREALETHKVFLRD 309 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 INWLGD D G + F K+RS++ P P ++ D +V+ E G+A GQACV Sbjct: 310 INWLGDAPIGDLPEGGIEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVL 369 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403 Y+ +SN ARV GGG I S+R EE L ++ + Sbjct: 370 YSDESNTARVFGGGFIGRSEREPQAEEMLRRLVANT 405 >gi|110634566|ref|YP_674774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mesorhizobium sp. BNC1] gi|123353475|sp|Q11G66|MNMA_MESSB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|110285550|gb|ABG63609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chelativorans sp. BNC1] Length = 391 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 230/391 (58%), Positives = 284/391 (72%), Gaps = 5/391 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLDL P+ RVVVAMSGGVDSSVVA LL R+GY+V+GVTLQLY+ A R GSCC Sbjct: 1 MNSLDLPGRPEATRVVVAMSGGVDSSVVAGLLAREGYEVVGVTLQLYDHGAAVHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV +T+ ++HYV DYEERFR AVI PFA SY GETP+PCV CN+TVKFSD Sbjct: 61 AGQDIDDARRVAETLGIAHYVLDYEERFRKAVIDPFAESYVTGETPIPCVACNQTVKFSD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL R+LGAD LATGHYIRSR R + RP+D +RDQSYFLFATTQ+Q+ L Sbjct: 121 LLETARELGADALATGHYIRSRAN-----GAHRALYRPVDADRDQSYFLFATTQEQIDYL 175 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG M K VR +A EMGL +A K DSQDICFV +GKY DV+ ++ G A GDIVH+ Sbjct: 176 RFPLGGMSKPQVRAIAEEMGLSVAAKHDSQDICFVPRGKYSDVITKLKPGAASPGDIVHI 235 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LGRH GI++YTIGQRRG+G+A GEPL+VV+LD +RV+VGPRE+LE R+ LR++ Sbjct: 236 DGRVLGRHEGILHYTIGQRRGIGIAAGEPLYVVHLDAEHARVVVGPREALETRRLILRQV 295 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD E+ +G F K+RS++ P P + D +V+ + E GVA GQACV Y Sbjct: 296 NWLGDFPLEELPANGMDLFAKVRSTRPPTPATLHNRDGSTWVELHEGETGVAPGQACVLY 355 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSV 399 + D N+ARV GGG I S+R E L + Sbjct: 356 SDDRNDARVFGGGFIERSERCADAEALLSRL 386 >gi|254719618|ref|ZP_05181429.1| tRNA-specific 2-thiouridylase MnmA [Brucella sp. 83/13] gi|265984628|ref|ZP_06097363.1| tRNA-specific 2-thiouridylase mnmA [Brucella sp. 83/13] gi|306837544|ref|ZP_07470417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella sp. NF 2653] gi|264663220|gb|EEZ33481.1| tRNA-specific 2-thiouridylase mnmA [Brucella sp. 83/13] gi|306407370|gb|EFM63576.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella sp. NF 2653] Length = 398 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 230/395 (58%), Positives = 289/395 (73%), Gaps = 5/395 (1%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 LNSLDL P+D RVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+ A R GSC Sbjct: 2 SLNSLDLPGKPEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSC 61 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 CAGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+ Sbjct: 62 CAGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFA 121 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL R LGAD LATGHYIRSR R + RP+D +RDQSYFLFATTQ+Q+ Sbjct: 122 DLLQAARDLGADALATGHYIRSRAN-----GAHRALYRPVDTDRDQSYFLFATTQEQIDY 176 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 LRFPLG + K VR++A E+GL +A K DSQDICFV QGKY D++ R+ A GDIVH Sbjct: 177 LRFPLGHLPKAQVREIAEELGLTVAKKQDSQDICFVPQGKYSDIISRLKPEAANPGDIVH 236 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 ++G+ LGRH+GI++YT+GQRRG+GVA GE L+VV+LD ++RVIVGPRE+LE H+++LR+ Sbjct: 237 IDGRTLGRHDGIVHYTVGQRRGIGVATGEALYVVHLDAANARVIVGPREALETHKVFLRD 296 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 +NWLGD D G + F KIRS++ P P ++ D +V+ E G+A GQACV Sbjct: 297 VNWLGDTPIADLPKSGMEVFAKIRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVL 356 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402 Y+ DSN ARV GGG I S+R EE L ++ + Sbjct: 357 YSDDSNAARVFGGGFIGRSEREPQAEEMLRRLMAN 391 >gi|86359043|ref|YP_470935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhizobium etli CFN 42] gi|123510891|sp|Q2K4M8|MNMA_RHIEC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|86283145|gb|ABC92208.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferaseprotein [Rhizobium etli CFN 42] Length = 408 Score = 518 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 231/399 (57%), Positives = 294/399 (73%), Gaps = 1/399 (0%) Query: 6 ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65 A LN+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+ A R G Sbjct: 7 APPLNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAG 66 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 SCCAGQD+ DAR VC+T+ + HYV DYE+RFR VI PFA SY AGETP+PCV CN+TVK Sbjct: 67 SCCAGQDIDDARHVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVK 126 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F+DLL+ ++LGAD LATGHYIRSR + RR + RP D +RDQSYFLFATTQ+Q+ Sbjct: 127 FADLLATAKELGADALATGHYIRSRPNPSSEHPGRRALFRPADADRDQSYFLFATTQEQI 186 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 LRFPLG + K R LA EMGL +A K+DSQDICFV QGKY D++ ++ AL G+I Sbjct: 187 DYLRFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEI 246 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 VHL+G++LG H GI+++TIGQRRG+G+A GEPL+VVYLD S RVIVGP+E+LE HR+YL Sbjct: 247 VHLDGRVLGSHEGILHFTIGQRRGIGIATGEPLYVVYLDARSRRVIVGPKEALETHRVYL 306 Query: 306 REINWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 R++NWLGD +A +GF C+ K+RS++ P P + + G YVD E G+A GQA Sbjct: 307 RDVNWLGDETLAEAASGEGFACYAKVRSTRAPAPAVLHVDATGTYVDLTIGEAGIAPGQA 366 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403 C Y++ ++ARV GGG I S+R + E SL +++ Sbjct: 367 CALYSAPGDDARVFGGGFIERSEREPSAEASLKALLASP 405 >gi|163758747|ref|ZP_02165834.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Hoeflea phototrophica DFL-43] gi|162284037|gb|EDQ34321.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Hoeflea phototrophica DFL-43] Length = 401 Score = 518 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 230/396 (58%), Positives = 297/396 (75%) Query: 5 EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64 +NSLD+DK+P+D RVVVAMSGGVDSSVVA LL R+GYDV+GVTLQLY+ A R Sbjct: 2 PGKTVNSLDIDKDPRDTRVVVAMSGGVDSSVVAGLLAREGYDVLGVTLQLYDHGAAVHRA 61 Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 G+CCAGQD+ DARRVC+ + + HYV DYE+RF+ AVI PFA SY AGETP+PCV CN+TV Sbjct: 62 GACCAGQDIDDARRVCEVLGIPHYVLDYEKRFQEAVINPFAESYVAGETPIPCVACNQTV 121 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 KF+DLL+ R LGAD LATGHYIRSR D RR + RP+D ERDQSYFLFATTQ Q Sbjct: 122 KFADLLATARDLGADALATGHYIRSRANPSADNPGRRALYRPIDSERDQSYFLFATTQDQ 181 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 L +RFPLG++ K R+LA EMGL +A K+DSQDICFV GKY +V++++ AL G+ Sbjct: 182 LDYVRFPLGELPKIRTRELAEEMGLTVAQKADSQDICFVPHGKYANVIEKLRPNSALAGE 241 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 IVH++G++LG H GI+++TIGQRRG+GVA+G+PL+VV+LD S RVIVGPRE+L+ R+ Sbjct: 242 IVHIDGRVLGEHPGIVHFTIGQRRGIGVAVGDPLYVVHLDARSKRVIVGPREALDTRRLI 301 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 LR++NWLGD +D +G CF K+RS++ P P ++ + + V+ + E GVA GQA Sbjct: 302 LRDMNWLGDFALDDLGPEGLSCFAKVRSTRPPRPAVLRYENGEISVELVEGESGVAPGQA 361 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 CV Y++ +EARV GGG I S+RS A E L +++ Sbjct: 362 CVLYSAPGDEARVFGGGFIDRSERSAAAEAMLANLL 397 >gi|254470572|ref|ZP_05083976.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudovibrio sp. JE062] gi|211960883|gb|EEA96079.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudovibrio sp. JE062] Length = 400 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 222/396 (56%), Positives = 291/396 (73%), Gaps = 5/396 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSL L P+D RVVVAMSGGVDSSVVA L+KR+GYDV+GVTLQLY+ +A +RKG+CC Sbjct: 2 LNSLGLPGRPEDTRVVVAMSGGVDSSVVAGLMKREGYDVVGVTLQLYDHGEAIQRKGACC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DARRV + + + HYV DYE RF+ VI FA SY GETP+PCV CN+TVKF D Sbjct: 62 AGQDIHDARRVAEKLGIPHYVLDYESRFKEQVIERFADSYINGETPIPCVTCNQTVKFKD 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL + LGADVL TGHY+R+ + + M RP+DL+RDQSYFLFATTQ+QL L Sbjct: 122 LLETAKDLGADVLVTGHYVRTGME-----GNQLAMFRPVDLDRDQSYFLFATTQEQLDFL 176 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG M K VR+LARE L IADK DSQDICFV QG+Y DV+ ++ A GDIVH+ Sbjct: 177 RFPLGGMTKPEVRELAREFDLAIADKHDSQDICFVPQGRYTDVIAKLRPHAAEPGDIVHV 236 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG+HNGII+YTIGQRRG+GVA G+PL+VV+LD + RVIVGP+E+L H + LRE+ Sbjct: 237 DGRVLGKHNGIIHYTIGQRRGIGVATGDPLYVVHLDADGRRVIVGPKEALATHNLLLREV 296 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+G G +D +G + K+RS++ P +++N + + V+ E+GVA GQACVF+ Sbjct: 297 NWIGPGALDDLPEEGITVYAKVRSTRPPTEAVLRKNGENIQVELVAGEMGVAPGQACVFF 356 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEF 404 + EARVLGGG I +++ + E +L +++G + Sbjct: 357 DKEGQEARVLGGGWIQRAEKQEGAEAALKALLGKSW 392 >gi|23502454|ref|NP_698581.1| tRNA-specific 2-thiouridylase MnmA [Brucella suis 1330] gi|62290471|ref|YP_222264.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 1 str. 9-941] gi|82700395|ref|YP_414969.1| tRNA-specific 2-thiouridylase MnmA [Brucella melitensis biovar Abortus 2308] gi|148559837|ref|YP_001259458.1| tRNA-specific 2-thiouridylase MnmA [Brucella ovis ATCC 25840] gi|189024699|ref|YP_001935467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella abortus S19] gi|225628026|ref|ZP_03786062.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella ceti str. Cudo] gi|225853065|ref|YP_002733298.1| tRNA-specific 2-thiouridylase MnmA [Brucella melitensis ATCC 23457] gi|237815980|ref|ZP_04594977.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella abortus str. 2308 A] gi|254689772|ref|ZP_05153026.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 6 str. 870] gi|254694261|ref|ZP_05156089.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 3 str. Tulya] gi|254697916|ref|ZP_05159744.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 2 str. 86/8/59] gi|254702309|ref|ZP_05164137.1| tRNA-specific 2-thiouridylase MnmA [Brucella suis bv. 5 str. 513] gi|254704837|ref|ZP_05166665.1| tRNA-specific 2-thiouridylase MnmA [Brucella suis bv. 3 str. 686] gi|254708251|ref|ZP_05170079.1| tRNA-specific 2-thiouridylase MnmA [Brucella pinnipedialis M163/99/10] gi|254710623|ref|ZP_05172434.1| tRNA-specific 2-thiouridylase MnmA [Brucella pinnipedialis B2/94] gi|254714807|ref|ZP_05176618.1| tRNA-specific 2-thiouridylase MnmA [Brucella ceti M644/93/1] gi|254717867|ref|ZP_05179678.1| tRNA-specific 2-thiouridylase MnmA [Brucella ceti M13/05/1] gi|254730806|ref|ZP_05189384.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 4 str. 292] gi|256032116|ref|ZP_05445730.1| tRNA-specific 2-thiouridylase MnmA [Brucella pinnipedialis M292/94/1] gi|256061638|ref|ZP_05451777.1| tRNA-specific 2-thiouridylase MnmA [Brucella neotomae 5K33] gi|256114160|ref|ZP_05454914.1| tRNA-specific 2-thiouridylase MnmA [Brucella melitensis bv. 3 str. Ether] gi|256160312|ref|ZP_05458006.1| tRNA-specific 2-thiouridylase MnmA [Brucella ceti M490/95/1] gi|256255517|ref|ZP_05461053.1| tRNA-specific 2-thiouridylase MnmA [Brucella ceti B1/94] gi|256258024|ref|ZP_05463560.1| tRNA-specific 2-thiouridylase MnmA [Brucella abortus bv. 9 str. C68] gi|256263452|ref|ZP_05465984.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 2 str. 63/9] gi|256370004|ref|YP_003107515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella microti CCM 4915] gi|260169251|ref|ZP_05756062.1| tRNA-specific 2-thiouridylase MnmA [Brucella sp. F5/99] gi|260547004|ref|ZP_05822743.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus NCTC 8038] gi|260755305|ref|ZP_05867653.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 6 str. 870] gi|260758526|ref|ZP_05870874.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 4 str. 292] gi|260762350|ref|ZP_05874693.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 2 str. 86/8/59] gi|260884320|ref|ZP_05895934.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 9 str. C68] gi|261214569|ref|ZP_05928850.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 3 str. Tulya] gi|261219714|ref|ZP_05933995.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M13/05/1] gi|261222726|ref|ZP_05937007.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti B1/94] gi|261315753|ref|ZP_05954950.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis M163/99/10] gi|261318196|ref|ZP_05957393.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis B2/94] gi|261322603|ref|ZP_05961800.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M644/93/1] gi|261325648|ref|ZP_05964845.1| tRNA-specific 2-thiouridylase mnmA [Brucella neotomae 5K33] gi|261752876|ref|ZP_05996585.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 5 str. 513] gi|261755533|ref|ZP_05999242.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 3 str. 686] gi|261758765|ref|ZP_06002474.1| tRNA-specific 2-thiouridylase mnmA [Brucella sp. F5/99] gi|265989227|ref|ZP_06101784.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis M292/94/1] gi|265995479|ref|ZP_06108036.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 3 str. Ether] gi|265998689|ref|ZP_06111246.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M490/95/1] gi|294852904|ref|ZP_06793577.1| tRNA methyl transferase [Brucella sp. NVSL 07-0026] gi|297248856|ref|ZP_06932574.1| tRNA methyl transferase [Brucella abortus bv. 5 str. B3196] gi|306843064|ref|ZP_07475687.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Brucella sp. BO2] gi|38258585|sp|Q8CY38|MNMA_BRUSU RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71658011|sp|Q57BT1|MNMA_BRUAB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|123547133|sp|Q2YQB2|MNMA_BRUA2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|166234846|sp|A5VRW1|MNMA_BRUO2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|229486334|sp|B2S746|MNMA_BRUA1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|254811446|sp|C0REM2|MNMA_BRUMB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|23348445|gb|AAN30496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella suis 1330] gi|62196603|gb|AAX74903.1| TrmU, tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella abortus bv. 1 str. 9-941] gi|82616496|emb|CAJ11563.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella melitensis biovar Abortus 2308] gi|148371094|gb|ABQ61073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella ovis ATCC 25840] gi|189020271|gb|ACD72993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella abortus S19] gi|225617189|gb|EEH14235.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella ceti str. Cudo] gi|225641430|gb|ACO01344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella melitensis ATCC 23457] gi|237789278|gb|EEP63489.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella abortus str. 2308 A] gi|256000167|gb|ACU48566.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella microti CCM 4915] gi|260096054|gb|EEW79931.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus NCTC 8038] gi|260668844|gb|EEX55784.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 4 str. 292] gi|260672782|gb|EEX59603.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 2 str. 86/8/59] gi|260675413|gb|EEX62234.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 6 str. 870] gi|260873848|gb|EEX80917.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 9 str. C68] gi|260916176|gb|EEX83037.1| tRNA-specific 2-thiouridylase mnmA [Brucella abortus bv. 3 str. Tulya] gi|260921310|gb|EEX87963.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti B1/94] gi|260924803|gb|EEX91371.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M13/05/1] gi|261295293|gb|EEX98789.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M644/93/1] gi|261297419|gb|EEY00916.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis B2/94] gi|261301628|gb|EEY05125.1| tRNA-specific 2-thiouridylase mnmA [Brucella neotomae 5K33] gi|261304779|gb|EEY08276.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis M163/99/10] gi|261738749|gb|EEY26745.1| tRNA-specific 2-thiouridylase mnmA [Brucella sp. F5/99] gi|261742629|gb|EEY30555.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 5 str. 513] gi|261745286|gb|EEY33212.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 3 str. 686] gi|262553313|gb|EEZ09147.1| tRNA-specific 2-thiouridylase mnmA [Brucella ceti M490/95/1] gi|262766592|gb|EEZ12381.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 3 str. Ether] gi|263093459|gb|EEZ17509.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 2 str. 63/9] gi|264661424|gb|EEZ31685.1| tRNA-specific 2-thiouridylase mnmA [Brucella pinnipedialis M292/94/1] gi|294821493|gb|EFG38492.1| tRNA methyl transferase [Brucella sp. NVSL 07-0026] gi|297176025|gb|EFH35372.1| tRNA methyl transferase [Brucella abortus bv. 5 str. B3196] gi|306286743|gb|EFM58293.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Brucella sp. BO2] gi|326409608|gb|ADZ66673.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella melitensis M28] gi|326539311|gb|ADZ87526.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella melitensis M5-90] Length = 398 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 229/395 (57%), Positives = 289/395 (73%), Gaps = 5/395 (1%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 LNSLDL P+D RVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+ A R GSC Sbjct: 2 SLNSLDLPGKPEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSC 61 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 CAGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+ Sbjct: 62 CAGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFA 121 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL R LGAD LATGHYIRSR R + RP+D +RDQSYFLFATTQ+Q+ Sbjct: 122 DLLQTARDLGADALATGHYIRSRAN-----GAHRALYRPVDTDRDQSYFLFATTQEQIDY 176 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 LRFPLG + K VR++A E+GL +A K DSQDICFV QGKY D++ R+ A GDIVH Sbjct: 177 LRFPLGHLPKAQVREIAEELGLTVAKKQDSQDICFVPQGKYSDIISRLKPEAANPGDIVH 236 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 ++G+ LGRH+GI++YT+GQRRG+GVA GE L+VV+LD ++RVIVGPRE+LE H+++LR+ Sbjct: 237 IDGRTLGRHDGIVHYTVGQRRGIGVATGEALYVVHLDAANARVIVGPREALETHKVFLRD 296 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 +NWLGD D G + F K+RS++ P P ++ D +V+ E G+A GQACV Sbjct: 297 VNWLGDTPIADLPKSGMEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVL 356 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402 Y+ DSN ARV GGG I S+R EE L ++ + Sbjct: 357 YSDDSNAARVFGGGFIGRSEREPQAEEMLRRLMAN 391 >gi|222086955|ref|YP_002545489.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein [Agrobacterium radiobacter K84] gi|254811443|sp|B9J9F7|MNMA_AGRRK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|221724403|gb|ACM27559.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein [Agrobacterium radiobacter K84] Length = 399 Score = 517 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 238/396 (60%), Positives = 297/396 (75%), Gaps = 1/396 (0%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +N+LD DK P+D RVVVAMSGGVDSSVVA +LKR GYDV+G+TLQLY+ A R GSCC Sbjct: 1 MNTLDFDKKPEDTRVVVAMSGGVDSSVVAGILKRQGYDVLGITLQLYDHGAAVHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRVC+TI + HYV DYE+RFR VI PFA SY AGETP+PCV CN+TVKF+D Sbjct: 61 AGQDIDDARRVCETIGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFAD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRSR D RR + RP D +RDQSYFLFATTQ+Q+ L Sbjct: 121 LLATAKELGADALATGHYIRSRPNPSADHPGRRALYRPADADRDQSYFLFATTQEQIDYL 180 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG M K R LA EMGL +A K+DSQDICFV QGKY DV+ ++ AL G+IVHL Sbjct: 181 RFPLGGMPKAETRALAEEMGLVVAKKADSQDICFVPQGKYSDVIAKLKPNAALAGEIVHL 240 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LGRH GI++YTIGQRRG+GVA G+PL+VV+LD S RVIVGP+E+LE HR+YLR++ Sbjct: 241 DGRVLGRHEGILHYTIGQRRGIGVATGDPLYVVFLDARSRRVIVGPKEALETHRVYLRDV 300 Query: 309 NWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 NWLGD +A +GF C+ K+RS++ P P ++ + DG+YVD E GVA GQAC Sbjct: 301 NWLGDEPLLEAASGEGFACYAKVRSTRPPEPAVLRADKDGIYVDLTIGEAGVAPGQACAL 360 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403 Y++ ++ARV GGG I S+R E SL +++ Sbjct: 361 YSAPGDDARVYGGGFIERSEREPMAEASLKALLASP 396 >gi|163843840|ref|YP_001628244.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella suis ATCC 23445] gi|189036219|sp|B0CI68|MNMA_BRUSI RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|163674563|gb|ABY38674.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella suis ATCC 23445] Length = 398 Score = 517 bits (1333), Expect = e-144, Method: Composition-based stats. Identities = 229/395 (57%), Positives = 289/395 (73%), Gaps = 5/395 (1%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 LNSLDL P+D RVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+ A R GSC Sbjct: 2 SLNSLDLPGKPEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHSAAVHRAGSC 61 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 CAGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+ Sbjct: 62 CAGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFA 121 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL R LGAD LATGHYIRSR R + RP+D +RDQSYFLFATTQ+Q+ Sbjct: 122 DLLQTARDLGADALATGHYIRSRAN-----GAHRALYRPVDTDRDQSYFLFATTQEQIDY 176 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 LRFPLG + K VR++A E+GL +A K DSQDICFV QGKY D++ R+ A GDIVH Sbjct: 177 LRFPLGHLPKAQVREIAEELGLTVAKKQDSQDICFVPQGKYSDIISRLKPEAANPGDIVH 236 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 ++G+ LGRH+GI++YT+GQRRG+GVA GE L+VV+LD ++RVIVGPRE+LE H+++LR+ Sbjct: 237 IDGRTLGRHDGIVHYTVGQRRGIGVATGEALYVVHLDAANARVIVGPREALETHKVFLRD 296 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 +NWLGD D G + F K+RS++ P P ++ D +V+ E G+A GQACV Sbjct: 297 VNWLGDTPIADLPKSGMEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVL 356 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402 Y+ DSN ARV GGG I S+R EE L ++ + Sbjct: 357 YSDDSNAARVFGGGFIGRSEREPQAEEMLRRLMAN 391 >gi|327192984|gb|EGE59899.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein [Rhizobium etli CNPAF512] Length = 399 Score = 517 bits (1332), Expect = e-144, Method: Composition-based stats. Identities = 232/396 (58%), Positives = 294/396 (74%), Gaps = 1/396 (0%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +N+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+ A R GSCC Sbjct: 1 MNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRVC+T+ + HYV DYE+RFR VI PFA SY AGETP+PCV CN+TVKF+D Sbjct: 61 AGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFAD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRSR + RR + RP D +RDQSYFLFATTQ+Q+ L Sbjct: 121 LLATAKELGADALATGHYIRSRPNPSPEHPGRRALFRPADADRDQSYFLFATTQEQIDYL 180 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K R LA EMGL +A K+DSQDICFV QGKY D++ ++ AL G+IVHL Sbjct: 181 RFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEIVHL 240 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG H GI+++TIGQRRG+G+A GEPL+VVYLD S RVIVGP+E+LE HR+YLR++ Sbjct: 241 DGRVLGSHEGILHFTIGQRRGIGIATGEPLYVVYLDARSRRVIVGPKEALETHRVYLRDV 300 Query: 309 NWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 NWLGD +A DGF C+ K+RS++ P P + + G YVD E G+A GQAC Sbjct: 301 NWLGDETLAEAASGDGFACYAKVRSTRAPAPAVLHVDATGTYVDLTVGEAGIAPGQACAL 360 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403 Y++ ++ARV GGG I S+R A E SL +++ Sbjct: 361 YSAPGDDARVFGGGFIERSEREPAAEASLKALLAGP 396 >gi|319408925|emb|CBI82582.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella schoenbuchensis R1] Length = 409 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 237/393 (60%), Positives = 292/393 (74%), Gaps = 5/393 (1%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 LNSLDL P++ R+VVAMSGGVDSSVVA LLK++GYDV+G+TLQLY+ A+ R GSC Sbjct: 2 SLNSLDLPGQPENSRIVVAMSGGVDSSVVAGLLKKEGYDVVGITLQLYDHGVATHRVGSC 61 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 CAGQD+ DARR+ +T+N+ HYV DYEERFR AVI PF SY GETP+PCV CN+TVKFS Sbjct: 62 CAGQDIEDARRIAETLNIPHYVLDYEERFREAVIDPFTESYTHGETPVPCVACNQTVKFS 121 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL+ R+LGAD LATGHYIRSR R + RP+D ERDQSYFLFATTQ+Q+ Sbjct: 122 DLLATARELGADALATGHYIRSRS-----CGAHRALFRPLDAERDQSYFLFATTQEQIDY 176 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 LRFPLGD+ K VR++A EMG +ADK DSQDICFV QGKY DV+ ++ G I+H Sbjct: 177 LRFPLGDLPKARVREIAAEMGFVVADKHDSQDICFVPQGKYSDVITKLRPESTNPGIIMH 236 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 +NGQILG H+GIINYT+GQRRG+G+A GE L+VVYLD ++RVIVGPRE LE H+++LR+ Sbjct: 237 INGQILGEHSGIINYTVGQRRGIGIATGEALYVVYLDAENARVIVGPREMLETHKLFLRD 296 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 +NWLGD ++ +G VKIRS++ P P + + VD +SE GVA GQACVF Sbjct: 297 VNWLGDEQLDNFPPNGIDVVVKIRSTRPPRPARLHYQNGVFSVDLLESESGVAPGQACVF 356 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 Y +SNEARVLGGG I+ S+RS E L V+ Sbjct: 357 YNENSNEARVLGGGFITHSERSAGAEAMLKQVL 389 >gi|209550765|ref|YP_002282682.1| tRNA-specific 2-thiouridylase MnmA [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226704775|sp|B5ZNK8|MNMA_RHILW RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|209536521|gb|ACI56456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 399 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 230/396 (58%), Positives = 292/396 (73%), Gaps = 1/396 (0%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +N+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+ A R GSCC Sbjct: 1 MNTLDFDKQPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRVC+T+ + HYV DYE+RFR VI PFA SY AGETP+PCV CN+TVKF+D Sbjct: 61 AGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFAD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRSR + RR + RP D +RDQSYFLFATTQ+Q+ L Sbjct: 121 LLATAKELGADALATGHYIRSRPNPSPEHPGRRALYRPADADRDQSYFLFATTQEQIDYL 180 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K R LA EMGL +A K+DSQDICFV QGKY D++ ++ AL G+IVHL Sbjct: 181 RFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEIVHL 240 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG H GI+++TIGQRRG+G+A GEPL+VV+LD S RVIVGP+E+LE HR+YLR++ Sbjct: 241 DGRVLGTHEGILHFTIGQRRGIGIATGEPLYVVFLDARSRRVIVGPKEALETHRVYLRDV 300 Query: 309 NWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 NWLGD A DGF C+ K+RS++ P P + + G YVD E G+A GQAC Sbjct: 301 NWLGDETLAQAATGDGFACYAKVRSTRAPAPAVLHIDATGTYVDLTVGEAGIAPGQACAL 360 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403 Y++ + ARV GGG I S+R + E SL +++ Sbjct: 361 YSAPGDNARVFGGGFIERSEREPSAEASLKALLASP 396 >gi|15613824|ref|NP_242127.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase [Bacillus halodurans C-125] gi|14195281|sp|Q9KDF2|MNMA_BACHD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|10173877|dbj|BAB04980.1| (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Bacillus halodurans C-125] Length = 371 Score = 517 bits (1331), Expect = e-144, Method: Composition-based stats. Identities = 136/375 (36%), Positives = 200/375 (53%), Gaps = 23/375 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 K P+ RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 3 AKRPEQTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYQ 59 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 D +VC+ + +++Y ++E+ + + V F Y AG TP P V CN+ +KF L+ Sbjct: 60 DVVQVCNQLGIAYYAVNFEKEYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLNHAL 119 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD +ATGHY + + G + + R D +DQ+YFL A +QQQL + FPLG Sbjct: 120 TLGADYVATGHYAQVKNVDG-----QYQLIRGKDPNKDQTYFLNALSQQQLSRVMFPLGH 174 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K+ VR +A GL A K DS ICF+ + + + + A G++ L+G++ G Sbjct: 175 LEKKEVRAIAERAGLATAKKKDSTGICFIGKRDFKEFLSSYLP--AQPGEMQTLDGEVKG 232 Query: 255 RHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINW 310 H+G++ YT+GQR+GLG+ GEP FV+ + + + VG L + ++NW Sbjct: 233 THDGLMYYTLGQRQGLGIGGSGEPWFVIGKNLEKNILYVGQGFHHPGLYSEGLRAIKVNW 292 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + + F+C K R Q V V DG V V F + + + GQA VFY Sbjct: 293 I----LRRESDEPFECTAKFRYRQPDQKVTVYPQSDGAVEVLFAEPQRAITPGQAVVFYD 348 Query: 370 SDSNEARVLGGGIIS 384 D LGGG I Sbjct: 349 GDV----CLGGGTID 359 >gi|218675488|ref|ZP_03525157.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhizobium etli GR56] Length = 399 Score = 516 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 231/396 (58%), Positives = 294/396 (74%), Gaps = 1/396 (0%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +N+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+ A R GSCC Sbjct: 1 MNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRVC+T+ + HYV DYE+RFR VI PFA SY AGETP+PCV CN+TVKF+D Sbjct: 61 AGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFAD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRSR + RR + RP D +RDQSYFLFATTQ+Q+ L Sbjct: 121 LLATAKELGADALATGHYIRSRPNPSLEHPGRRALFRPADADRDQSYFLFATTQEQIDYL 180 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K R LA EMGL +A K+DSQDICFV QGKY D++ ++ AL G+IVHL Sbjct: 181 RFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEIVHL 240 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG H GI+++TIGQRRG+G+A GEPL+VVYLD S RVIVGP+E+LE HR+YLR++ Sbjct: 241 DGRVLGSHEGILHFTIGQRRGIGIATGEPLYVVYLDARSRRVIVGPKEALETHRVYLRDV 300 Query: 309 NWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 NWLGD DA +GF C+ K+RS++ P P + + G YVD E G+A GQAC Sbjct: 301 NWLGDETLADAASGEGFACYAKVRSTRAPAPAVLHVDSTGTYVDLTVGEAGIAPGQACAL 360 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403 Y++ ++ARV GGG I S+R + E SL +++ Sbjct: 361 YSAPGDDARVFGGGFIERSEREPSAEASLKALLASP 396 >gi|116253697|ref|YP_769535.1| tRNA-specific 2-thiouridylase MnmA [Rhizobium leguminosarum bv. viciae 3841] gi|205816894|sp|Q1MC84|MNMA_RHIL3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|115258345|emb|CAK09447.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhizobium leguminosarum bv. viciae 3841] Length = 408 Score = 515 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 230/399 (57%), Positives = 291/399 (72%), Gaps = 1/399 (0%) Query: 6 ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65 A LN+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+ A R G Sbjct: 7 APSLNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAG 66 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 SCCAGQD+ DARRVC+T+ + HYV DYE+RFR VI PFA SY AGETP+PCV CN+TVK Sbjct: 67 SCCAGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVK 126 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F+DLL+ ++LGAD LATGHYIRS + RR + RP D +RDQSYFLFATTQ+Q+ Sbjct: 127 FADLLATAKELGADALATGHYIRSGRNPSPENPGRRALFRPADADRDQSYFLFATTQEQI 186 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 LRFPLG + K R LA EMGL +A K+DSQDICFV QGKY DV+ ++ AL G+I Sbjct: 187 DYLRFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDVITKLKPNAALAGEI 246 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 VHL+G++LG H GI+++TIGQRRG+G+A GEPL+VV+LD S RVIVGP+E+LE HR+YL Sbjct: 247 VHLDGRVLGTHEGILHFTIGQRRGIGIATGEPLYVVFLDARSRRVIVGPKEALETHRVYL 306 Query: 306 REINWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 R++NWLGD +A GF C+ K+RS++ P P + + G YVD E G+A GQA Sbjct: 307 RDVNWLGDETLAEAAAGKGFACYAKVRSTRAPAPAVLHIDATGTYVDLTVGEAGIAPGQA 366 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403 C Y++ + ARV GGG I S+R + E L +++ Sbjct: 367 CALYSAPGDNARVFGGGFIERSEREPSAEACLKALLASP 405 >gi|17986711|ref|NP_539345.1| tRNA-specific 2-thiouridylase MnmA [Brucella melitensis bv. 1 str. 16M] gi|256045209|ref|ZP_05448107.1| tRNA-specific 2-thiouridylase MnmA [Brucella melitensis bv. 1 str. Rev.1] gi|260565193|ref|ZP_05835677.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 1 str. 16M] gi|265991642|ref|ZP_06104199.1| tRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] gi|24638318|sp|Q8YIL6|MNMA_BRUME RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|17982334|gb|AAL51609.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Brucella melitensis bv. 1 str. 16M] gi|260151261|gb|EEW86355.1| tRNA-specific 2-thiouridylase mnmA [Brucella melitensis bv. 1 str. 16M] gi|263002426|gb|EEZ15001.1| tRNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1] Length = 398 Score = 515 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 228/395 (57%), Positives = 288/395 (72%), Gaps = 5/395 (1%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 LNSLDL P+D RVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+ A R GSC Sbjct: 2 SLNSLDLPGKPEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSC 61 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 CAGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+ Sbjct: 62 CAGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFA 121 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL R LGAD LATGHYIRSR R + RP+D +RDQSYFLFATTQ+Q+ Sbjct: 122 DLLQTARDLGADALATGHYIRSRAN-----GAHRALYRPVDTDRDQSYFLFATTQEQIDY 176 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 LRFPLG + K VR++A E+GL +A K DSQDICFV QGKY D++ R+ A GDIVH Sbjct: 177 LRFPLGHLPKAQVREIAEELGLTVAKKQDSQDICFVPQGKYSDIISRLKPEAANPGDIVH 236 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 ++G+ LGRH+GI++YT+GQRRG+GVA GE L+VV+LD ++RVIVGPRE+LE H+++LR+ Sbjct: 237 IDGRTLGRHDGIVHYTVGQRRGIGVATGEALYVVHLDAANARVIVGPREALETHKVFLRD 296 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 +NWLGD D G + F K+RS++ P P ++ D +V+ E G+A GQACV Sbjct: 297 VNWLGDTPIADLPKSGMEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVL 356 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402 Y+ DSN A V GGG I S+R EE L ++ + Sbjct: 357 YSDDSNAACVFGGGFIGRSEREPQAEEMLRRLMAN 391 >gi|239827834|ref|YP_002950458.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus sp. WCH70] gi|239808127|gb|ACS25192.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus sp. WCH70] Length = 371 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 141/382 (36%), Positives = 202/382 (52%), Gaps = 23/382 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K PKD RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MNKAPKDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +GAD +ATGHY R G+ M R +D +DQ+YFL Q L + FP+G Sbjct: 118 LSIGADYVATGHYARVEYRDGE-----YKMLRGVDQNKDQTYFLNQLGQSVLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR +A++ GL A K DS ICF+ + + + + A G + L+G++ Sbjct: 173 HLEKAQVRQIAKDAGLVTATKKDSTGICFIGERDFKEFLSNYLP--AKPGIMQTLDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP FVV + + + V E L + +N Sbjct: 231 GKHDGVMYYTIGQRHGLGIGGSGEPWFVVGKNVKENILYVAQGFNNEYLYSTSLIATNVN 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ D + F+C K R Q V V +DD V V F++ V GQA VFY Sbjct: 291 WVSDR----KPTNSFQCTAKFRYRQPDTGVTVHIIDDDKVEVVFDEPVRAVTPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSD 390 + LGGG I R+ Sbjct: 347 NGE----ECLGGGTIDEVFRNG 364 >gi|161619531|ref|YP_001593418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella canis ATCC 23365] gi|260565920|ref|ZP_05836390.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 4 str. 40] gi|189036218|sp|A9M700|MNMA_BRUC2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|161336342|gb|ABX62647.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brucella canis ATCC 23365] gi|260155438|gb|EEW90518.1| tRNA-specific 2-thiouridylase mnmA [Brucella suis bv. 4 str. 40] Length = 398 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 228/395 (57%), Positives = 288/395 (72%), Gaps = 5/395 (1%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 LNSLDL +D RVVVAMSGGVDSSVVA +LKR+GYDV+GVTLQLY+ A R GSC Sbjct: 2 SLNSLDLPGKSEDTRVVVAMSGGVDSSVVAGILKREGYDVVGVTLQLYDHGAAVHRAGSC 61 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 CAGQD+ DARRV +++ + HYV DYE RFR AVI PFA+SY +GETP+PCV CN+TVKF+ Sbjct: 62 CAGQDIEDARRVSESLGIPHYVLDYEARFREAVIDPFANSYVSGETPIPCVSCNQTVKFA 121 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL R LGAD LATGHYIRSR R + RP+D +RDQSYFLFATTQ+Q+ Sbjct: 122 DLLQTARDLGADALATGHYIRSRAN-----GAHRALYRPVDTDRDQSYFLFATTQEQIDY 176 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 LRFPLG + K VR++A E+GL +A K DSQDICFV QGKY D++ R+ A GDIVH Sbjct: 177 LRFPLGHLPKAQVREIAEELGLTVAKKQDSQDICFVPQGKYSDIISRLKPEAANPGDIVH 236 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 ++G+ LGRH+GI++YT+GQRRG+GVA GE L+VV+LD ++RVIVGPRE+LE H+++LR+ Sbjct: 237 IDGRTLGRHDGIVHYTVGQRRGIGVATGEALYVVHLDAANARVIVGPREALETHKVFLRD 296 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 +NWLGD D G + F K+RS++ P P ++ D +V+ E G+A GQACV Sbjct: 297 VNWLGDTPIADLPKSGMEVFAKVRSTRPPRPAVLRHADGQTWVELVDGESGIAPGQACVL 356 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402 Y+ DSN ARV GGG I S+R EE L ++ + Sbjct: 357 YSDDSNAARVFGGGFIGRSEREPQAEEMLRRLMAN 391 >gi|294501356|ref|YP_003565056.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus megaterium QM B1551] gi|294351293|gb|ADE71622.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus megaterium QM B1551] Length = 370 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 140/382 (36%), Positives = 205/382 (53%), Gaps = 23/382 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K+PKD RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MTKSPKDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 NDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY R G+ M R +D +DQ+YFL Q QL + FP+G Sbjct: 118 MTLGADYLATGHYARVAYRDGE-----YKMLRGVDGNKDQTYFLNQLGQDQLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR++A+E GL A K DS ICF+ + + + + + A G + L+G++ Sbjct: 173 EIEKSKVREIAKEAGLATATKKDSTGICFIGERNFKEFLSQYLP--AQPGVMQTLDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP FVV D + + V E L + ++ Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGSGEPWFVVGKDLEKNVLYVDQGFHNELLYSTSLTATNVS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368 W+ + + + C K R Q V V++ +DD + V F + + GQA VFY Sbjct: 291 WVSERDWSSPMT----CTAKFRYRQTDSAVTVEKVDDDTIKVIFAEPVRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSD 390 D LGG I + + Sbjct: 347 KDD----ECLGGATIDKVFQEE 364 >gi|89100972|ref|ZP_01173817.1| TrmU [Bacillus sp. NRRL B-14911] gi|89084308|gb|EAR63464.1| TrmU [Bacillus sp. NRRL B-14911] Length = 370 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 140/384 (36%), Positives = 205/384 (53%), Gaps = 24/384 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K+PKD RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MAKSPKDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY R + G+ M R +D +DQ+YFL T++QL + FP+G Sbjct: 118 MSLGADYLATGHYARV-----EHGENGVKMLRGLDENKDQTYFLNQLTEEQLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR++A++ GL A K DS ICF+ + + + + A G + + G+ + Sbjct: 173 SIEKSEVREIAKKAGLATAAKKDSTGICFIGERNFKEFLGNYLP--AQPGSMETMEGETV 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 GRH+G++ YTIGQR GLG+ G+P FV+ D + + VG E L I +++ Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGAGDPWFVIGKDLKRNVLYVGQGFDNEKLYSDSIIADKVS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W+ A + F+C K R Q V V ++G + F V GQA VFY Sbjct: 291 WVS-----KAPGETFECTAKFRYRQPDNSVTVTLLENGQAKITFHSPIRAVTPGQAVVFY 345 Query: 369 TSDSNEARVLGGGIISGSKRSDAV 392 + LGGG I ++ + Sbjct: 346 DGEV----CLGGGTIDRVFNNEQM 365 >gi|319781789|ref|YP_004141265.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167677|gb|ADV11215.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 396 Score = 514 bits (1324), Expect = e-143, Method: Composition-based stats. Identities = 231/395 (58%), Positives = 288/395 (72%), Gaps = 5/395 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLDL P++ R+VVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+ A+ R GSCC Sbjct: 1 MNSLDLPGRPENTRIVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV +T+ + HYV DYEERFR AVI PFA SY AGETP+PCV CN+TVKF+D Sbjct: 61 AGQDIDDARRVSETLGIPHYVLDYEERFRKAVIDPFAESYVAGETPIPCVSCNQTVKFAD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRS G +G +R + RP+D +RDQSYFLFATTQ Q+ L Sbjct: 121 LLATAKELGADALATGHYIRS----GANGAQRA-LYRPVDADRDQSYFLFATTQAQIDYL 175 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K VR +A EMGL +A K DSQDICFV QGKY D++ ++ A GDIVH+ Sbjct: 176 RFPLGGLSKPQVRAIAEEMGLAVAAKQDSQDICFVPQGKYSDIIAKLKPTAANPGDIVHI 235 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LGRH GI+ YTIGQRRG+G+A GEPL+VV+LD + +RV+VGPRE+LE H+IYLR + Sbjct: 236 DGRVLGRHEGILRYTIGQRRGIGIASGEPLYVVHLDADRARVVVGPREALETHKIYLRNM 295 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGDG D G + F K+RS++ P P + +V+ E G+A GQACV Y Sbjct: 296 NWLGDGPLTDVPAGGLELFAKVRSTRPPRPAVLHHRAGATWVELVDGESGIAPGQACVLY 355 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403 + D NEARV GGG I S+R E L + Sbjct: 356 SDDGNEARVFGGGFIERSERGAEAEAMLTRLAARP 390 >gi|226330495|ref|ZP_03806013.1| hypothetical protein PROPEN_04413 [Proteus penneri ATCC 35198] gi|225201290|gb|EEG83644.1| hypothetical protein PROPEN_04413 [Proteus penneri ATCC 35198] Length = 367 Score = 513 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 126/379 (33%), Positives = 200/379 (52%), Gaps = 28/379 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LLK GY V+G+ ++ + ++ C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLKEQGYQVVGLFMKNWEEDDDTE---YCSASTDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + Y ++ + + V F S Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGIELYTINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEYAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R R D + + R +D +DQSYFL+ + +Q+ FP+G+M Sbjct: 120 LGADYIATGHYVRRR-----DINGKSQLLRGVDNNKDQSYFLYTLSHEQIAQSLFPVGEM 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++ L A K DS ICF+ + K+ D + R A G I+ ++G+ +G Sbjct: 175 EKPEVRKIAEKLDLATAKKKDSTGICFIGERKFTDFLSRYLP--AKPGPIITVDGETIGE 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ +P +VV D ++ +IV L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKDGGDDPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366 ++W+ + + + F+C VK R Q + V ++D + V F+ V GQ+ V Sbjct: 293 LHWVS----REPITEAFRCTVKTRYRQPDIACTVTPLSEDKIEVRFDYPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIISG 385 FY + LGGGII Sbjct: 349 FYQDEV----CLGGGIIET 363 >gi|261418420|ref|YP_003252102.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus sp. Y412MC61] gi|319767620|ref|YP_004133121.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus sp. Y412MC52] gi|261374877|gb|ACX77620.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus sp. Y412MC61] gi|317112486|gb|ADU94978.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus sp. Y412MC52] Length = 371 Score = 513 bits (1323), Expect = e-143, Method: Composition-based stats. Identities = 145/382 (37%), Positives = 201/382 (52%), Gaps = 23/382 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MNKAPHETRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F + Y AG TP P V CN+ +KF L Sbjct: 58 EDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +GAD +ATGHY R G+ M R D +DQ+YFL Q QL + FP+G Sbjct: 118 MSIGADYIATGHYARVEFRDGE-----YKMLRGADPNKDQTYFLNQLGQAQLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR +A+E GL A K DS ICF+ + + + + A G + L+G++ Sbjct: 173 HLQKADVRRIAKEAGLATAGKKDSTGICFIGERDFKEFLSHYLP--AQPGVMKTLDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 GRH+G++ YTIGQR GLG+ GEP FVV D + + V E L + ++N Sbjct: 231 GRHDGVMYYTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVN 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFY 368 W+ D E F+C K R Q V V V D GV V F+ V GQA VFY Sbjct: 291 WVSDRKPE----APFRCTAKFRYRQPDVGVTVHPLADGGVEVVFDAPARAVTPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSD 390 + LGGG I R+ Sbjct: 347 NGE----ECLGGGTIDEVFRNG 364 >gi|56421098|ref|YP_148416.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus kaustophilus HTA426] gi|81557817|sp|Q5KWT8|MNMA2_GEOKA RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|56380940|dbj|BAD76848.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Geobacillus kaustophilus HTA426] Length = 371 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 144/382 (37%), Positives = 200/382 (52%), Gaps = 23/382 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MNKAPHETRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F + Y AG TP P V CN+ +KF L Sbjct: 58 EDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +GAD +ATGHY R G+ M R D +DQ+YFL Q QL + FP+G Sbjct: 118 MSIGADYIATGHYARVEFRDGE-----YKMLRGADPNKDQTYFLNQLGQAQLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR +A+E GL A K DS ICF+ + + + + A G + L+G++ Sbjct: 173 HLQKADVRRIAKEAGLATAGKKDSTGICFIGERDFKEFLSHYLP--AQPGVMKTLDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 GRH+G++ YTIGQR GLG+ GEP FVV D + + V E L + ++N Sbjct: 231 GRHDGVMYYTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVN 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFY 368 W+ D E F+C K R Q V V V D G V F+ V GQA VFY Sbjct: 291 WVSDRKPE----APFRCTAKFRYRQPDVGVTVHPLADGGAEVVFDAPARAVTPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSD 390 + LGGG I R+ Sbjct: 347 NGE----ECLGGGTIDEVFRNG 364 >gi|260462497|ref|ZP_05810704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mesorhizobium opportunistum WSM2075] gi|259031693|gb|EEW32962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mesorhizobium opportunistum WSM2075] Length = 396 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 230/395 (58%), Positives = 285/395 (72%), Gaps = 5/395 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLDL P++ R+VVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+ A+ R GSCC Sbjct: 1 MNSLDLPGRPENTRIVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV +T+ + HYV DYEERFR AVI PFA SY AGETP+PCV CN+TVKF+D Sbjct: 61 AGQDIDDARRVSETLGIPHYVLDYEERFRKAVIDPFAESYVAGETPIPCVSCNQTVKFAD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRS G +G R + RP+D +RDQSYFLFATTQ Q+ L Sbjct: 121 LLATAKELGADALATGHYIRS----GANG-AHRALYRPVDADRDQSYFLFATTQAQIDYL 175 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K VR +A EMGL +A K DSQDICFV QGKY D++ ++ A GDIVH+ Sbjct: 176 RFPLGGLSKPQVRAIAEEMGLTVAAKQDSQDICFVPQGKYSDIIAKLKPSAANPGDIVHI 235 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LGRH GI+ YTIGQRRG+G+A GEPL+VV+LD +RV+VGPRE+LE +IYLR + Sbjct: 236 DGRVLGRHEGILRYTIGQRRGIGIASGEPLYVVHLDAERARVVVGPREALETRKIYLRNM 295 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGDG D G + F K+RS++ P P ++ V+ E G+A GQACV Y Sbjct: 296 NWLGDGQLTDIPAGGIELFAKVRSTRPPRPAVLRHEAGVTSVELADGESGIAPGQACVLY 355 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403 + D NEARV GGG I S+R E L + Sbjct: 356 SDDGNEARVFGGGFIERSERGAEAEAMLSRLAAKP 390 >gi|197284773|ref|YP_002150645.1| tRNA-specific 2-thiouridylase MnmA [Proteus mirabilis HI4320] gi|227357779|ref|ZP_03842128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Proteus mirabilis ATCC 29906] gi|229486421|sp|B4EVG2|MNMA_PROMH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|194682260|emb|CAR41993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Proteus mirabilis HI4320] gi|227162108|gb|EEI47122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Proteus mirabilis ATCC 29906] Length = 367 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 128/379 (33%), Positives = 201/379 (53%), Gaps = 28/379 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LLK GY V+G+ ++ + ++ C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLKEQGYQVVGLFMKNWEEDDDTE---YCSASADLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F S Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGIELHTINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEYAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R R D + + R +D +DQSYFL+ + QQ+ FP+G+M Sbjct: 120 LGADYIATGHYVRRR-----DIDGKSQLLRGVDNNKDQSYFLYTLSHQQIAQSLFPVGEM 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++ L A K DS ICF+ + K+ D + R A G IV ++G+ +G Sbjct: 175 EKPEVRKIAEKLDLATAKKKDSTGICFIGERKFTDFLSRYLP--AKPGPIVTVDGETIGE 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ +P +VV D ++ +IV L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVANNILIVAQGHEHPRLMSVGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366 ++W+ + + + F+C VK R Q +P V ++D + V F+ V GQ+ V Sbjct: 293 LHWVA----REPITEAFRCTVKTRYRQADIPCTVTPLDEDKIEVRFDYPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIISG 385 FY + LGGGII Sbjct: 349 FYQDEV----CLGGGIIET 363 >gi|241206171|ref|YP_002977267.1| tRNA-specific 2-thiouridylase MnmA [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860061|gb|ACS57728.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 403 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 231/399 (57%), Positives = 291/399 (72%), Gaps = 1/399 (0%) Query: 6 ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65 A LN+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+ A R G Sbjct: 2 APSLNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAG 61 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 SCCAGQD+ DARRVC+T+ + HYV DYE+RFR VI PFA SY AGETP+PCV CN+TVK Sbjct: 62 SCCAGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVK 121 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F+DLL+ ++LGAD LATGHYIRS D RR + RP D +RDQSYFLFATTQ+Q+ Sbjct: 122 FADLLATAKELGADALATGHYIRSGRNPSPDNPGRRALFRPADADRDQSYFLFATTQEQI 181 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 LRFPLG + K R LA EMGL +A K+DSQDICFV QGKY DV+ ++ AL G+I Sbjct: 182 DYLRFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDVITKLKPNAALAGEI 241 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 VHL+G++LG H GI+++TIGQRRG+G+A GEPL+VV+LD S RVIVGP+E+LE HR+YL Sbjct: 242 VHLDGRVLGSHEGILHFTIGQRRGIGIATGEPLYVVFLDARSRRVIVGPKEALETHRVYL 301 Query: 306 REINWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 R++NWLGD +A GF C+ K+RS++ P P + + G YVD E G+A GQA Sbjct: 302 RDVNWLGDETLAEAAAGKGFACYAKVRSTRAPAPAVLHIDAIGTYVDLTVGEAGIAPGQA 361 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403 C Y++ + ARV GGG I S+R + E L +++ Sbjct: 362 CALYSAPGDNARVFGGGFIERSEREPSAEACLKALLASP 400 >gi|295706703|ref|YP_003599778.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus megaterium DSM 319] gi|294804362|gb|ADF41428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus megaterium DSM 319] Length = 370 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 139/382 (36%), Positives = 205/382 (53%), Gaps = 23/382 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K+PKD RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MTKSPKDTRVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 NDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY R G+ M R +D +DQ+YFL Q QL + FP+G Sbjct: 118 MTLGADYLATGHYARVAYRDGE-----YKMLRGVDGNKDQTYFLNQLGQDQLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR++A+E GL A K DS ICF+ + + + + + A G + L+G++ Sbjct: 173 EIEKSKVREIAKEAGLATATKKDSTGICFIGERNFKEFLSQYLP--AQPGVMQTLDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP FVV D + + V E L + ++ Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGSGEPWFVVGKDLEKNVLYVDQGFHNELLYSTSLTATNVS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368 W+ + + + C K R Q V V++ +DD + V F + + GQA VFY Sbjct: 291 WVSERDWSSPMT----CTAKFRYRQTDSAVTVEKVDDDTIKVIFAEPVRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSD 390 D +GG I + + Sbjct: 347 KDD----ECVGGATIDKVFQEE 364 >gi|24638328|sp|Q98HL0|MNMA_RHILO RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 396 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 231/395 (58%), Positives = 286/395 (72%), Gaps = 5/395 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLDL P++ R+VVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+ A+ R GSCC Sbjct: 1 MNSLDLPGRPENTRIVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV +T+ + HYV DYEERFR AVI PFA SY AGETP+PCV CN+TVKF+D Sbjct: 61 AGQDIDDARRVSETLGIPHYVLDYEERFRKAVIDPFAESYVAGETPIPCVSCNQTVKFAD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRS G +G R + RP+D +RDQSYFLFATTQ Q+ L Sbjct: 121 LLATAKELGADALATGHYIRS----GANG-AHRALYRPVDADRDQSYFLFATTQAQIDYL 175 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K VR +A EMGL +A K DSQDICFV QGKY D++ ++ A GDIVH+ Sbjct: 176 RFPLGGLSKPQVRAIAEEMGLTVAAKQDSQDICFVPQGKYSDIIAKLKPAAANPGDIVHI 235 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LGRH GI+ YTIGQRRG+G+A GEPL+VV+LD +RV+VGPRE+LE H+IYLR + Sbjct: 236 DGRVLGRHEGILRYTIGQRRGIGIASGEPLYVVHLDAERARVVVGPREALETHKIYLRNM 295 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGDG D G + F K+RS++ P P ++ V+ E G+A GQACV Y Sbjct: 296 NWLGDGPLGDIPEGGLELFAKVRSTRPPRPAVLRYVAGVTSVELADGESGIAPGQACVLY 355 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403 + D NEARV GGG I S+R E L + Sbjct: 356 SDDGNEARVFGGGFIERSERGAEAEAMLTKLAARP 390 >gi|229918430|ref|YP_002887076.1| tRNA-specific 2-thiouridylase MnmA [Exiguobacterium sp. AT1b] gi|229469859|gb|ACQ71631.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Exiguobacterium sp. AT1b] Length = 373 Score = 512 bits (1320), Expect = e-143, Method: Composition-based stats. Identities = 133/382 (34%), Positives = 201/382 (52%), Gaps = 24/382 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 K P++ VVV MSGGVDSSV A +LK GY+VIG+ ++ ++ + G C A +D Sbjct: 5 TKAPEETTVVVGMSGGVDSSVTAHVLKEQGYNVIGIFMKNWDD---TDENGVCTATEDYE 61 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 D V + I + +Y ++E+ + + V F + Y G TP P V CN+ +KF L Sbjct: 62 DVIAVANQIGIPYYAVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDHAL 121 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 +LGAD +ATGHY + + G+ + R D +DQ+YFL +Q QL FP+G Sbjct: 122 RLGADFVATGHYAQVKYVDGE-----HRLLRGKDDNKDQTYFLNQLSQDQLARTMFPIGH 176 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 M K+ VR +A E GL A K DS ICF+ + + + + + G++ L+G + G Sbjct: 177 MDKKDVRAIAEEAGLATAKKKDSTGICFIGERNFKEFLSEYLP--SQPGEMRTLDGVVKG 234 Query: 255 RHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINW 310 RH+G++ YT+GQR GLG+ G+P FVV D ++ + VG ++L + +++W Sbjct: 235 RHDGLMYYTLGQRHGLGIGGDGDPWFVVGKDVENNVLFVGQGFHHDALYSDALLASKLSW 294 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 G A F+ K R Q VPV V ++G V V F++ + + GQA VFY Sbjct: 295 TG-----AAPTGEFRATAKFRYRQQDVPVTVAPLENGEVLVKFDEPQRAITPGQAVVFYD 349 Query: 370 SDSNEARVLGGGIISGSKRSDA 391 D LGG I + R+ Sbjct: 350 GDV----CLGGATIDEAYRNGK 367 >gi|289434792|ref|YP_003464664.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289171036|emb|CBH27578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313633159|gb|EFS00043.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria seeligeri FSL N1-067] Length = 371 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 135/388 (34%), Positives = 202/388 (52%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + D+RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSTKNSDIRVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L Sbjct: 58 DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + + + R +D +DQ+YFL +Q+QL + FPLG Sbjct: 118 ESLGADFVATGHYAQVKKVGDE-----IELLRGVDNNKDQTYFLNQLSQEQLQKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K+ VR++A + GL A+K DS ICF+ + + + A G + L+G++L Sbjct: 173 GMEKKEVREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGKMQTLDGEVL 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP FV D + + V ESL + +I+ Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVAGKDLKENILFVEQGFHHESLYSDSLIATDIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 + + + +C K R Q V V R+D+ V F + + GQA VFY Sbjct: 291 FTTNAEKPKTI----ECTAKFRYRQTDTKVTVHLRDDNTAEVVFAEPVRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGGG I +++A + + Sbjct: 347 DGDI----CLGGGTIDTVWKNNAKLDYV 370 >gi|297529272|ref|YP_003670547.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus sp. C56-T3] gi|297252524|gb|ADI25970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus sp. C56-T3] Length = 371 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 144/382 (37%), Positives = 200/382 (52%), Gaps = 23/382 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MNKAPHETRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F + Y AG TP P V CN+ +KF L Sbjct: 58 EDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +GAD +ATGHY R G+ M R D +DQ+YFL Q QL + FP+G Sbjct: 118 MSIGADYIATGHYARVEFRDGE-----YKMLRGADPNKDQTYFLNQLGQAQLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR +A+E GL A K DS ICF+ + + + + A G + L+G++ Sbjct: 173 HLQKADVRRIAKEAGLATAGKKDSTGICFIGERDFKEFLSHYLP--ARPGVMKTLDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 GRH+G++ YTIGQR GLG+ GEP FVV D + + V E L + ++N Sbjct: 231 GRHDGVMYYTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVN 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFY 368 W+ D E F+C K R Q V V V D G V F+ V GQA VFY Sbjct: 291 WVSDRKPE----APFRCTAKFRYRQPDVGVTVHPLADGGAEVVFDAPARAVTPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSD 390 + LGGG I R+ Sbjct: 347 NGE----ECLGGGTIDEVFRNG 364 >gi|315303264|ref|ZP_07873908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria ivanovii FSL F6-596] gi|313628376|gb|EFR96865.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria ivanovii FSL F6-596] Length = 371 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 137/388 (35%), Positives = 202/388 (52%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + D+RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSTKNSDIRVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I + +Y ++E+ + + V F + Y G TP P V CN+ +KF L Sbjct: 58 EDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLNEYKLGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + + + R +D +DQ+YFL +Q+QL + FPLG Sbjct: 118 ESLGADFVATGHYAQVKQVGDE-----IELLRGVDNNKDQTYFLNQLSQEQLQKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K VR++A + GL A+K DS ICF+ + + + A G + LNG++L Sbjct: 173 GMEKSEVREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGKMQTLNGEVL 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP FVV D + + V E+L + +I+ Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLTENILFVEQGFHHETLYSDSLIATDIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 + + A +C K R Q V V R+D+ V F + + GQA VFY Sbjct: 291 FTTNA----AKPKTIECTAKFRYRQTDTKVTVHLRDDNTAEVVFAEPVRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGGG I ++ A + + Sbjct: 347 DGDI----CLGGGTIDTVWKNGAKLDYV 370 >gi|313637741|gb|EFS03100.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria seeligeri FSL S4-171] Length = 371 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 134/388 (34%), Positives = 202/388 (52%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + D+RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSTKNSDIRVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L Sbjct: 58 DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + + + R +D +DQ+YFL +Q+QL + FPLG Sbjct: 118 ESLGADFVATGHYAQVKKVGDE-----IELLRGVDNNKDQTYFLNQLSQEQLQKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K+ VR++A + GL A+K DS ICF+ + + + A G + L+G++L Sbjct: 173 GMEKKEVREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGKMQTLDGEVL 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP FV D + + V ESL + +I+ Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVAGKDLKENILFVEQGFHHESLYSDSLIATDIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 + + + +C K R Q V V R+++ V F + + GQA VFY Sbjct: 291 FTTNAEKPKTI----ECTAKFRYRQTDTKVTVHLRDNNTAEVVFAEPVRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGGG I +++A + + Sbjct: 347 DGDI----CLGGGTIDTVWKNNAKLDYV 370 >gi|323490019|ref|ZP_08095240.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Planococcus donghaensis MPA1U2] gi|323396315|gb|EGA89140.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Planococcus donghaensis MPA1U2] Length = 371 Score = 511 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 135/387 (34%), Positives = 197/387 (50%), Gaps = 21/387 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K P+D RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MTKAPQDTRVVVGMSGGVDSSVAAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY + M R D +DQ+YFL Q QL + FP+G Sbjct: 118 LSLGADYLATGHYAQVEHA----ENGETKMLRGKDNNKDQTYFLNQLDQHQLSKVMFPIG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K+ VR++A E L A K DS ICF+ + + + + + A G + L G + Sbjct: 174 HMEKKKVREIALEAELATATKKDSTGICFIGERNFKEFLGQYLP--AQPGQMETLEGVKM 231 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 G H+G++ YTIGQR+GLG+ G+P FV+ D + + VG ++L + ++ Sbjct: 232 GTHDGLMYYTIGQRQGLGIGGAGDPWFVIGKDLERNVLYVGQNIHHDALFSDSLTAVNLS 291 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + +C K R Q V V V+ + V F + + GQA VFY Sbjct: 292 FTSNT----PPSGILECTAKFRYRQQDVGVSVEFKGESAIVTFAEPVRAITPGQAVVFYD 347 Query: 370 SDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG I ++ A E + Sbjct: 348 GE----ECLGGGTIDHVFKNGARLEYV 370 >gi|138896133|ref|YP_001126586.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus thermodenitrificans NG80-2] gi|196250086|ref|ZP_03148780.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus sp. G11MC16] gi|166234855|sp|A4IR87|MNMA_GEOTN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|134267646|gb|ABO67841.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus thermodenitrificans NG80-2] gi|196210270|gb|EDY05035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus sp. G11MC16] Length = 371 Score = 511 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 144/382 (37%), Positives = 200/382 (52%), Gaps = 23/382 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MNKAPHETRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F + Y AG TP P V CN+ +KF L Sbjct: 58 EDVVRVCNQIGIPYYAVNFEKQYWDKVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +GAD +ATGHY R G+ M R D +DQ+YFL Q QL + FP+G Sbjct: 118 MSIGADYVATGHYARVEFRDGE-----YKMLRGADPNKDQTYFLNQLGQAQLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR +A+E GL A K DS ICF+ + + + + A G + L+G++ Sbjct: 173 HLQKADVRRIAKEAGLATAGKKDSTGICFIGERDFKEFLSHYLP--AQPGVMKTLDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 GRH+G++ YTIGQR GLG+ GEP FVV D + + V E L + ++N Sbjct: 231 GRHDGVMYYTIGQRHGLGIGGSGEPWFVVGKDVRENVLYVAQGFENEYLYSTSLKAVDVN 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W+ D E F+C K R Q + V V DG V F+ V GQA VFY Sbjct: 291 WVSDRKPE----APFRCTAKFRYRQPDIGVMVHPLADGKAEVVFDAPARAVTPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSD 390 D LGGG I R+ Sbjct: 347 NGD----ECLGGGTIDEVFRNG 364 >gi|242373921|ref|ZP_04819495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis M23864:W1] gi|242348475|gb|EES40077.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis M23864:W1] Length = 372 Score = 511 bits (1316), Expect = e-142, Method: Composition-based stats. Identities = 138/379 (36%), Positives = 210/379 (55%), Gaps = 20/379 (5%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +D+RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 2 SNEDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 VC+ I + +Y ++EE + + V F Y G TP P V CN+ +KF L +L Sbjct: 59 IAVCNQIGIPYYAVNFEEEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R R + M R +D +DQ+YFL +Q+QL + FP+GD++ Sbjct: 119 GADYVATGHYARIRRH----EDGHVEMLRGVDNNKDQTYFLNQLSQEQLSKVMFPIGDIE 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A E L A K DS ICF+ + + + + + A GD+V L+G+ +G+H Sbjct: 175 KSEVRRIAEEQDLATAKKKDSTGICFIGERNFKEFLSQYLP--AQSGDMVTLDGKKMGQH 232 Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +G++ YTIGQR GLG+ G+P FVV + + + + V ++L + + +++ Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLDDNVLYVEQGFHHDALYSDYLVASDYSFVN 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 +G E + GF+C K R Q VFVQR N++ + V F++ + GQA VFY + Sbjct: 293 EG--EINLEQGFECTAKFRYRQKDTKVFVQRENENSIRVTFDQPVRAITPGQAVVFYNGE 350 Query: 372 SNEARVLGGGIISGSKRSD 390 LGG I +++ Sbjct: 351 V----CLGGATIDDVYKNE 365 >gi|24638313|sp|Q8U9M5|MNMA_AGRT5 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 398 Score = 510 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 233/395 (58%), Positives = 294/395 (74%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +N+LD DK P+D R+VVAMSGGVDSSVVA +LKR+GYDV+G+TLQLY+ A R GSCC Sbjct: 1 MNTLDFDKRPEDTRIVVAMSGGVDSSVVAGILKREGYDVLGITLQLYDHGAAVHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRVC+T+ + HYV DYE RFR VI PFA +YA GETP+PCV CN+TVKF+D Sbjct: 61 AGQDIDDARRVCETLGIPHYVLDYEARFRETVINPFAEAYAMGETPIPCVACNQTVKFAD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRSR RR + RP+D +RDQS+FLFATTQ+Q+ L Sbjct: 121 LLATAQELGADALATGHYIRSRPNPVSGQPGRRALYRPIDSDRDQSWFLFATTQEQIDYL 180 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K R LA EMGL +A K+DSQDICFV QGKY D++ ++ AL GDIVHL Sbjct: 181 RFPLGGLSKAETRALAEEMGLVVAKKADSQDICFVPQGKYTDIINKLKPNAALAGDIVHL 240 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LGRH+GI++YTIGQRRG+GVA GEPL+VV+LD RVIVGPRE+LE R+YLR++ Sbjct: 241 DGRVLGRHDGIVHYTIGQRRGIGVATGEPLYVVHLDARGRRVIVGPREALETRRVYLRDM 300 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGDG GF CF K+RS++ P + +++G+YVD E GVA GQACV Y Sbjct: 301 NWLGDGALAADAGQGFTCFAKVRSTRPPTEAVLHADENGIYVDLMTGEAGVAPGQACVLY 360 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403 ++ +ARV GGG I S+RS E SL +++ Sbjct: 361 SAPGPDARVYGGGFIDRSERSVDAEASLKALLEKP 395 >gi|172058087|ref|YP_001814547.1| tRNA-specific 2-thiouridylase MnmA [Exiguobacterium sibiricum 255-15] gi|205816866|sp|B1YJE9|MNMA_EXIS2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|171990608|gb|ACB61530.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Exiguobacterium sibiricum 255-15] Length = 374 Score = 510 bits (1315), Expect = e-142, Method: Composition-based stats. Identities = 134/387 (34%), Positives = 199/387 (51%), Gaps = 23/387 (5%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 K P++ VVV MSGGVDSSV A LLK+ GY+VIG+ ++ ++ + G C A +D Sbjct: 5 AKAPEETTVVVGMSGGVDSSVTAYLLKQQGYNVIGIFMKNWDD---TDENGFCTATEDYE 61 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 D V + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L Sbjct: 62 DVIAVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLDHAM 121 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 +LGAD +ATGHY R+ G+ + R +D +DQ+YFL +Q Q+ FP+G Sbjct: 122 RLGADFVATGHYARAVYEDGE-----HKLLRGVDTNKDQTYFLNQLSQDQIAKAMFPIGH 176 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 M+K VR +A E L A K DS ICF+ + + + + A G++ L+G+ +G Sbjct: 177 MEKSEVRKIAEEANLATAKKKDSTGICFIGERNFKQFLSQYLP--AQPGEMRTLDGKTMG 234 Query: 255 RHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINW 310 RH+G++ YT+GQR GLG+ GEP FVV + + + V E L +Y +I+W Sbjct: 235 RHDGLMYYTMGQRHGLGIGGDGEPWFVVGKNLQDNILFVEQGFHNELLYSEGLYASDISW 294 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 F+C K R Q PV V+ D G + V F++ + + GQA VFY Sbjct: 295 TATM----PAGTEFRCTAKFRYRQTDTPVTVRVLDGGRLDVAFDERQRAITPGQAVVFYD 350 Query: 370 SDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I + ++ L Sbjct: 351 GDV----CLGGATIDDAYKAGQALTYL 373 >gi|313623686|gb|EFR93838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria innocua FSL J1-023] Length = 371 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 137/383 (35%), Positives = 198/383 (51%), Gaps = 23/383 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + N D+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L Sbjct: 58 EDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + + + R +D +DQ+YFL +Q QL + FPLG Sbjct: 118 ESLGADYVATGHYAQVKKVGDE-----IELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K VR++A + GL A+K DS ICF+ + + + A GD+ L+G++L Sbjct: 173 GMEKTEVREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGDMRTLDGEVL 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP FVV D ++ + V +SL + +I+ Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKNNVLFVEQGFHHDSLYSDSLIATDIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 + + F+C K R Q V V +DG V F + GQA VFY Sbjct: 291 FTTNS----EKPKTFECTAKFRYRQTDTKVTVNMREDGTAEVVFADPVRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDA 391 D LGGG I + A Sbjct: 347 DGDI----CLGGGTIDTVWKKGA 365 >gi|116872941|ref|YP_849722.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Listeria welshimeri serovar 6b str. SLCC5334] gi|123461086|sp|A0AIW1|MNMA_LISW6 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|116741819|emb|CAK20943.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 371 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 137/388 (35%), Positives = 202/388 (52%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + N D+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L Sbjct: 58 DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLEEYKLGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + + + R +D +DQ+YFL +Q QL + FPLG Sbjct: 118 ESLGADYVATGHYAQVKKIGDE-----IELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K VR++A + GL A+K DS ICF+ + + + A G++ L+G++L Sbjct: 173 GMEKTEVREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLDGEVL 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP FVV D ++ + V ESL + +I+ Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKANVLFVEQGFHHESLYSDSLIATDIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 + + F+C K R Q V V R+D V F + GQA VFY Sbjct: 291 FTTNA----EKPKTFECTAKFRYRQTDTKVTVHLRSDGTAEVVFADPVRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGGG I +++A + + Sbjct: 347 DGDI----CLGGGTIDTVWKNEAKLDYV 370 >gi|223044127|ref|ZP_03614166.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus capitis SK14] gi|314933788|ref|ZP_07841153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus caprae C87] gi|222442521|gb|EEE48627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus capitis SK14] gi|313653938|gb|EFS17695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus caprae C87] Length = 372 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 135/379 (35%), Positives = 208/379 (54%), Gaps = 20/379 (5%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + KD+RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 2 SNKDIRVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 VC+ I + +Y ++EE + + V F Y G TP P V CN+ +KF L +L Sbjct: 59 IAVCNQIGIPYYAVNFEEEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R R + M R +D +DQ+YFL +Q+QL + FP+GD++ Sbjct: 119 GADYVATGHYARIRRH----EDGHVEMLRGVDNNKDQTYFLNQLSQEQLSKVMFPIGDIE 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A E L A K DS ICF+ + + + + + A GD+V L+G+ +G+H Sbjct: 175 KSEVRRIAEEQDLATAKKKDSTGICFIGERNFKEFLSQYLP--AQSGDMVTLDGKKMGQH 232 Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +G++ YTIGQR GLG+ G+P FVV + + + + V ++L + + +++ Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLDDNLLYVEQGFHHDALYSDYLIASDFSFVN 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371 + + + GF+C K R Q VFV++ D+ + V F++ + GQA VFY + Sbjct: 293 ENEID--LEHGFECTAKFRYRQKDTKVFVKKEDESSIRVTFDQPVRAITPGQAVVFYNEE 350 Query: 372 SNEARVLGGGIISGSKRSD 390 LGG I +++ Sbjct: 351 V----CLGGATIDDVYKNE 365 >gi|227535218|ref|ZP_03965267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187102|gb|EEI67169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 471 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 132/379 (34%), Positives = 188/379 (49%), Gaps = 25/379 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + ++RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A D D Sbjct: 101 DNSNIRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDV 157 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F Y AG TP P V CN+ +KF L QL Sbjct: 158 AKVASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYADQL 217 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY + + D M R D +DQ+YFL +Q QL FP+G ++ Sbjct: 218 NADYIAMGHYAQVKT----DENGIVHMLRGADGNKDQTYFLSQLSQDQLKKSLFPIGHLQ 273 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + A G ++ ++G +G H Sbjct: 274 KPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEMGTH 331 Query: 257 NGIINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 +G++ YTIGQR+GLG+ EP FVV D + + + VG +L + +N Sbjct: 332 DGLMYYTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLN 391 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W A +G K R Q V + +DDG VDF+ + GQA VFY Sbjct: 392 WTTG----QAPAEGTHMTAKFRYRQRDTGVTLHYHDDGTATVDFDVPVRAITPGQAVVFY 447 Query: 369 TSDSNEARVLGGGIISGSK 387 D LGGG I + Sbjct: 448 DGD----ECLGGGTIDAAY 462 >gi|290893871|ref|ZP_06556849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes FSL J2-071] gi|290556588|gb|EFD90124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes FSL J2-071] Length = 371 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 136/383 (35%), Positives = 199/383 (51%), Gaps = 23/383 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + N D+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L Sbjct: 58 DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + + + R +D +DQ+YFL +Q QL + FPLG Sbjct: 118 ESLGADYVATGHYAQVKKVGDE-----IELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K VR++A++ GL A+K DS ICF+ + + + A G++ L+G++L Sbjct: 173 GMEKTEVREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLDGEVL 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP FVV D + + V E+L + +I+ Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 + + A +C K R Q V V +DG V F + GQA VFY Sbjct: 291 FTTNA----AKPKTIECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDA 391 D LGGG I ++ A Sbjct: 347 DGDI----CLGGGTIDTVWKNGA 365 >gi|229543733|ref|ZP_04432793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus coagulans 36D1] gi|229328153|gb|EEN93828.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus coagulans 36D1] Length = 371 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 145/391 (37%), Positives = 207/391 (52%), Gaps = 26/391 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K PKD RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MQKAPKDTRVVVGMSGGVDSSVAAYLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 NDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY R G+ M R +D +DQ+YFL Q QL + FP+G Sbjct: 118 LNLGADYLATGHYARVTHQDGE-----YKMLRGVDGNKDQTYFLNQLGQYQLSRVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 D++K VR++A+E GL A+K DS ICF+ + + + + A +G + L+G+++ Sbjct: 173 DLEKPRVREIAKEAGLATANKKDSTGICFIGERNFKEFLSHYLP--AQKGLMKTLDGKVM 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G H G++ YTIGQR GLG+ GEP F V D + + V +L + + N Sbjct: 231 GEHEGLMYYTIGQRHGLGIGGSGEPWFAVGKDLKENVLYVEQGFHHPALYSDYMTGVKAN 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + F+C K R Q V VQ +D V V +++ V GQA VFY Sbjct: 291 WVSG----KKPPEVFRCTAKFRYRQPDQKVTVQLLGNDEVKVIYDEPVRAVTPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSV 399 + LGG I ++ EE L+ V Sbjct: 347 NGE----ECLGGATIDKIYKN---EEQLMYV 370 >gi|325063117|gb|ADY66807.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Agrobacterium sp. H13-3] Length = 402 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 233/395 (58%), Positives = 295/395 (74%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +N+LD DK P+D R+VVAMSGGVDSSVVA +LKR+GYDV+G+TLQLY+ A R GSCC Sbjct: 5 VNTLDFDKRPEDTRIVVAMSGGVDSSVVAGILKREGYDVLGITLQLYDHGAAVHRAGSCC 64 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRVC+T+ + HYV DYE RFR VI PFA +YA GETP+PCV CN+TVKF+D Sbjct: 65 AGQDIDDARRVCETLGIPHYVLDYEARFRETVINPFAEAYAMGETPIPCVACNQTVKFAD 124 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRSR RR + RP+D +RDQS+FLFATTQ+Q+ L Sbjct: 125 LLATAQELGADALATGHYIRSRPNPVAGQPGRRALYRPIDSDRDQSWFLFATTQEQIDYL 184 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K R LA +MGL +A K+DSQDICFV QGKY D++ ++ AL GDIVHL Sbjct: 185 RFPLGGLSKAETRALAEDMGLVVAKKADSQDICFVPQGKYTDIINKLKPNAALAGDIVHL 244 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LGRH+GI++YTIGQRRG+GVA GEPL+VV+LD RVIVGPRE+LE R+YLR++ Sbjct: 245 DGRVLGRHDGIVHYTIGQRRGIGVATGEPLYVVHLDARGRRVIVGPREALETRRVYLRDM 304 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGDG D GF CF K+RS++ P + +++G+YVD E GVA GQACV Y Sbjct: 305 NWLGDGALADEAGQGFACFAKVRSTRPPTEAMLHADENGIYVDLMTGEAGVAPGQACVLY 364 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403 ++ +ARV GGG I S+RS E SL +++ Sbjct: 365 SAPGADARVYGGGFIERSERSVDAEASLKALLEKP 399 >gi|297584733|ref|YP_003700513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus selenitireducens MLS10] gi|297143190|gb|ADH99947.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus selenitireducens MLS10] Length = 371 Score = 508 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 140/381 (36%), Positives = 211/381 (55%), Gaps = 23/381 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 +K P+D R+VV MSGGVDSSV A LLK GY+VIG+ ++ ++ + G C A +D Sbjct: 4 EKRPEDTRIVVGMSGGVDSSVTAHLLKEQGYEVIGIFMKNWDD---TDEFGVCTATEDYE 60 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 D RVC+ +++ +Y ++E+++ + V F Y +G TP P V CN+ +KF L Sbjct: 61 DVIRVCNQLDIPYYAVNFEKQYWDKVFTYFLDEYKSGRTPNPDVMCNKEIKFKAFLDHAM 120 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD +ATGHY + DG + + R D +DQ+YFL A +Q QL + FPLGD Sbjct: 121 TLGADYVATGHYAKVSH--TPDGVK---LLRGKDRNKDQTYFLNALSQDQLRHVLFPLGD 175 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K VR++A E GL A K DS ICF+ + + + + A G++ L+G++ G Sbjct: 176 IEKPRVREIAEEAGLATAGKKDSTGICFIGERNFKEFLSEYLP--AQPGNMETLDGEVKG 233 Query: 255 RHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINW 310 H+G++ YT+GQR+GLG+ GEP FV+ D + + ++VG +L + +NW Sbjct: 234 THDGLMYYTLGQRQGLGIGGSGEPWFVIDKDLSRNVLLVGQGFHHPALYSEGLKADGVNW 293 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + A + F C VK R Q V DG V + F+++E V GQA VFY Sbjct: 294 VAGS----APAERFHCTVKTRYRQQDRGATVTVEPDGSVTLMFDEAERAVTPGQAVVFYD 349 Query: 370 SDSNEARVLGGGIISGSKRSD 390 + LGGG I+ +S+ Sbjct: 350 DEI----CLGGGTINERIKSE 366 >gi|191638296|ref|YP_001987462.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus casei BL23] gi|190712598|emb|CAQ66604.1| Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus casei BL23] gi|327382323|gb|AEA53799.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus casei LC2W] gi|327385523|gb|AEA56997.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus casei BD-II] Length = 443 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 132/379 (34%), Positives = 188/379 (49%), Gaps = 25/379 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + ++RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A D D Sbjct: 73 DNSNIRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDV 129 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F Y AG TP P V CN+ +KF L QL Sbjct: 130 AKVASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYADQL 189 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY + + D M R D +DQ+YFL +Q QL FP+G ++ Sbjct: 190 NADYIAMGHYAQVKT----DENGIVHMLRGADGNKDQTYFLSQLSQDQLKKSLFPIGHLQ 245 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + A G ++ ++G +G H Sbjct: 246 KPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEMGTH 303 Query: 257 NGIINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 +G++ YTIGQR+GLG+ EP FVV D + + + VG +L + +N Sbjct: 304 DGLMYYTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLN 363 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W A +G K R Q V + +DDG VDF+ + GQA VFY Sbjct: 364 WTTG----QAPAEGTHMTAKFRYRQRDTGVTLHYHDDGTATVDFDVPVRAITPGQAVVFY 419 Query: 369 TSDSNEARVLGGGIISGSK 387 D LGGG I + Sbjct: 420 DGD----ECLGGGTIDAAY 434 >gi|46907740|ref|YP_014129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes str. 4b F2365] gi|226224113|ref|YP_002758220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes Clip81459] gi|254824429|ref|ZP_05229430.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes FSL J1-194] gi|254852136|ref|ZP_05241484.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes FSL R2-503] gi|254931447|ref|ZP_05264806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes HPB2262] gi|254993966|ref|ZP_05276156.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL J2-064] gi|300764822|ref|ZP_07074812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes FSL N1-017] gi|67461977|sp|Q71ZF8|MNMA_LISMF RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|259495831|sp|C1KVF9|MNMA_LISMC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|46881009|gb|AAT04306.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes serotype 4b str. F2365] gi|225876575|emb|CAS05284.1| Putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258605439|gb|EEW18047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes FSL R2-503] gi|293582998|gb|EFF95030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes HPB2262] gi|293593665|gb|EFG01426.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes FSL J1-194] gi|300514498|gb|EFK41555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes FSL N1-017] gi|328465550|gb|EGF36779.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes 1816] gi|328474873|gb|EGF45673.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes 220] Length = 371 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 136/388 (35%), Positives = 201/388 (51%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + N D+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L Sbjct: 58 DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + + + R +D +DQ+YFL +Q QL + FPLG Sbjct: 118 ESLGADYVATGHYAQVKKVGDE-----IELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K VR++A++ GL A+K DS ICF+ + + + A G++ LNG++L Sbjct: 173 GMEKTEVREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLNGEVL 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP FVV D + + V E+L + +I+ Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 + + + +C K R Q V V +DG V F + GQA VFY Sbjct: 291 FTTNAEKPKTI----ECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGGG I ++ A + + Sbjct: 347 DGDI----CLGGGTIDTVWKNGAKLDYV 370 >gi|217964341|ref|YP_002350019.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes HCC23] gi|254811452|sp|B8DDZ8|MNMA_LISMH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|217333611|gb|ACK39405.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes HCC23] gi|307571093|emb|CAR84272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes L99] Length = 371 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 137/383 (35%), Positives = 199/383 (51%), Gaps = 23/383 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + N D+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L Sbjct: 58 DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + + + R +D +DQ+YFL +Q QL + FPLG Sbjct: 118 ESLGADFVATGHYAQVKKVGDE-----IELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K VR++A++ GL A+K DS ICF+ + + + A G++ LNG++L Sbjct: 173 AMEKTEVREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLNGEVL 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP FVV D + + V E+L + +I+ Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 + + A +C K R Q V V +DG V F + GQA VFY Sbjct: 291 FTTNA----AKPKTIECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDA 391 D LGGG I ++ A Sbjct: 347 DGDI----CLGGGTIDTVWKNGA 365 >gi|183599450|ref|ZP_02960943.1| hypothetical protein PROSTU_02929 [Providencia stuartii ATCC 25827] gi|188021697|gb|EDU59737.1| hypothetical protein PROSTU_02929 [Providencia stuartii ATCC 25827] Length = 367 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 130/379 (34%), Positives = 201/379 (53%), Gaps = 28/379 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V+G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVVGLFMKNWEEDDDEE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F S Y AG TP P + CN+ +KF L Sbjct: 60 QSVCDKLGIELHTINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R R D + + R +D +DQSYFL+ + Q+ FP+G++ Sbjct: 120 LGADYIATGHYVRRR-----DVNGKSQLLRGLDNNKDQSYFLYTLSYAQIAKSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E+GL A K DS ICF+ + K+ D + R A G IV ++G+ +G+ Sbjct: 175 EKPEVRRIAEEVGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVTVDGETIGQ 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ EP +VV D ++R+IV L + ++ Sbjct: 233 HEGLMYHTLGQRKGLGIGGMKEGSDEPWYVVDKDVENNRLIVAQGHEHPRLMSTGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 ++W+ + + +C VK R Q +P V +DG V V F+ V GQ+ V Sbjct: 293 LDWVD----REPLTQTLRCAVKTRYRQADIPCTVTPLNDGKVEVIFDYPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIISG 385 FY + LGGGII Sbjct: 349 FYLDEV----CLGGGIIES 363 >gi|253989217|ref|YP_003040573.1| tRNA -specific 2-thiouridylase MnmA [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780667|emb|CAQ83829.1| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Photorhabdus asymbiotica] Length = 367 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 127/378 (33%), Positives = 199/378 (52%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDNEE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD +++ + ++ + + V F S Y AG TP P + CN+ +KF L Sbjct: 60 QSVCDKLDIELHTVNFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + D + + R +D +DQSYFL+ QQ+ FP+G++ Sbjct: 120 LGADYIATGHYVRRK-----DINGKSQLLRGLDNNKDQSYFLYTLNHQQIAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++GL A K DS ICF+ + K+ D + R A G IV ++G+ LG Sbjct: 175 EKPEVRRIAEKIGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AKPGPIVTVDGKNLGE 232 Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ EP +V+ D ++ +IV SL + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKDGNEEPWYVIDKDIQNNILIVAQGHEHPSLMSTGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366 ++W+ + + + C VK R Q +P V N+D + V F V GQ+ V Sbjct: 293 LHWVD----KQPLTEEIHCVVKTRYRQQDIPCTVTPINEDKIKVRFANPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGG+I Sbjct: 349 FYQGEI----CLGGGVIE 362 >gi|288555376|ref|YP_003427311.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus pseudofirmus OF4] gi|288546536|gb|ADC50419.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase [Bacillus pseudofirmus OF4] Length = 367 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 138/380 (36%), Positives = 203/380 (53%), Gaps = 23/380 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K P+D +VVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MKKRPEDTKVVVGMSGGVDSSVTALVLKEQGYDVIGIFMKNWDD---TDESGFCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L+ Sbjct: 58 EDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLNHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ + R +D +DQ+YFL A +QQQL FP+G Sbjct: 118 MALGADYVATGHYARVEEVDGE-----FQLLRGVDSNKDQTYFLNALSQQQLSKTMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 + K+ VR+ A L A K DS ICF+ + + + + A G++ ++G++ Sbjct: 173 HIPKKEVREKALAADLATAKKKDSTGICFIGERNFKEFLSGFLP--AQPGEMQTVDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 G+H+G++ YT+GQR+GLG+ GEP FV+ D + +IVG + L + +N Sbjct: 231 GQHDGLMYYTLGQRQGLGIGGAGEPWFVIDKDLERNVLIVGQGFHNQGLYSEGLEAVHLN 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368 W+ F+C K R QD V V +D G V F++ E + GQA VFY Sbjct: 291 WIS----PTKPTSEFRCTAKFRYRQDDQGVTVIPQEDGGALVKFDEPERAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKR 388 D LGGG I + Sbjct: 347 EGDV----CLGGGTIDRVIK 362 >gi|315282423|ref|ZP_07870840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria marthii FSL S4-120] gi|313613928|gb|EFR87655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria marthii FSL S4-120] Length = 371 Score = 507 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 135/383 (35%), Positives = 199/383 (51%), Gaps = 23/383 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + N D+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MTTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L Sbjct: 58 DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + + + R +D +DQ+YFL +Q QL + FPLG Sbjct: 118 ESLGADYVATGHYAQVKKVGDE-----IELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K VR++A++ GL ADK DS ICF+ + + + A G++ L+G++L Sbjct: 173 GMEKTEVREIAKKAGLATADKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLDGEVL 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP FVV D ++ + V E+L + +I+ Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKANVLFVEQGFHHETLYSDSLIATDIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 + + + +C K R Q V V +DG V F + GQA VFY Sbjct: 291 FTTNAEKPKTI----ECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDA 391 D LGGG I ++ Sbjct: 347 DGDI----CLGGGTIDTVWKNGT 365 >gi|319406809|emb|CBI80442.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella sp. 1-1C] Length = 409 Score = 507 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 229/392 (58%), Positives = 296/392 (75%), Gaps = 5/392 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL +PK+ RVVVAMSGGVDSSVVA LLK++GYDV+G+TLQLY+ A+ R G+CC Sbjct: 3 LNSLDLPGHPKNSRVVVAMSGGVDSSVVAGLLKKEGYDVVGITLQLYDHGAATHRVGACC 62 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV +T+ V HY+ DYEERFR AVI PFA SYA GETP+PCV CN+TVKFSD Sbjct: 63 AGQDIEDARRVAETLGVPHYILDYEERFREAVINPFAESYAHGETPIPCVSCNQTVKFSD 122 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ +LGAD LATGHYIRSR++ R + R +D +RDQSYFLFATTQ+Q+ L Sbjct: 123 LLTTAYELGADALATGHYIRSRVH-----GAHRALFRSLDADRDQSYFLFATTQEQIDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGD+ KE VR++A EMGL +A+K DSQDICFV QGKY D++ ++ A G IVH+ Sbjct: 178 RFPLGDLSKERVREIATEMGLVVANKHDSQDICFVPQGKYSDIITKLRPEAANPGVIVHI 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +GQILG H+GI+NYTIGQRRG+GV+ GE L+V+YLD ++ VIVGPRE LE +++LR++ Sbjct: 238 DGQILGEHSGIVNYTIGQRRGIGVSTGEALYVIYLDVENACVIVGPREMLETRKLFLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD ++ +DG + VK+RS++ P + +VD +SE GVA GQACV Y Sbjct: 298 NWLGDEQLDNFPLDGIEVAVKVRSTRPPRSARLHYKQGSFFVDLLESESGVAPGQACVLY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 +S+EAR+LGGG I+ ++R+ E+ L V+ Sbjct: 358 NDNSHEARILGGGFITCAERAADTEKMLKRVL 389 >gi|313618826|gb|EFR90711.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria innocua FSL S4-378] Length = 371 Score = 507 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 137/383 (35%), Positives = 197/383 (51%), Gaps = 23/383 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + N D+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L Sbjct: 58 DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + + + R +D +DQ+YFL +Q QL + FPLG Sbjct: 118 ESLGADYVATGHYAQVKKVGDE-----IELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K VR++A + GL A+K DS ICF+ + + + A GD+ L+G++L Sbjct: 173 GMEKTEVREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGDMRTLDGEVL 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP FVV D ++ + V +SL + +I+ Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKNNVLFVEQGFHHDSLYSDSLIATDIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 + + F C K R Q V V +DG V F + GQA VFY Sbjct: 291 FTTNS----EKPKTFVCTAKFRYRQTDTKVTVNLREDGTAEVVFADPVRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDA 391 D LGGG I + A Sbjct: 347 DGDI----CLGGGTIDTVWKKGA 365 >gi|260597502|ref|YP_003210073.1| tRNA-specific 2-thiouridylase MnmA [Cronobacter turicensis z3032] gi|260216679|emb|CBA30030.1| tRNA-specific 2-thiouridylase mnmA [Cronobacter turicensis z3032] Length = 369 Score = 507 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 126/378 (33%), Positives = 196/378 (51%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGED---YCTAASDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGIELHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R D + + R +D +DQSYFL+ Q+ FP+G++ Sbjct: 120 LGADYIATGHYVRRA-----DVNGKSRLLRGLDGNKDQSYFLYTLGHDQVAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E+ L A K DS ICF+ + K+ + + R A G IV ++G ++G Sbjct: 175 EKPEVRRIAEELDLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIVTVDGDVIGE 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ EP +VV D ++ +IV L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKDGGEEPWYVVDKDVENNILIVAQGHDHPRLMSVGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366 ++W+ + V F C VK R Q +P V+ +DD + V F++ V GQ+ V Sbjct: 293 LHWVD----REPVTAPFTCTVKTRYRQADIPCTVRPLDDDRIEVLFDEPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 349 FYLGEV----CLGGGIIE 362 >gi|296446642|ref|ZP_06888583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylosinus trichosporium OB3b] gi|296255870|gb|EFH02956.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylosinus trichosporium OB3b] Length = 411 Score = 507 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 220/403 (54%), Positives = 276/403 (68%), Gaps = 12/403 (2%) Query: 3 VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62 V + T LNSL L K +D RVVVAMSGGVDSSVVAALL GYDV+GVTLQLY+ +A Sbjct: 8 VPDETELNSLGLPKPAQDTRVVVAMSGGVDSSVVAALLAEQGYDVVGVTLQLYDHGEAVH 67 Query: 63 RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122 RKGSCCAGQD++DARRV + + HYV D+E RFR VI FA SYA+GETP+PCV CN+ Sbjct: 68 RKGSCCAGQDIHDARRVAARLGIPHYVLDFETRFRETVIDTFAQSYASGETPVPCVACNQ 127 Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 VKF DL + LGAD LATGHYI SR G+ R + R MD RDQSYFLFATT+ Sbjct: 128 FVKFVDLFETAKDLGADALATGHYIASRP-----GRGGRGLYRAMDAARDQSYFLFATTR 182 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 QL LRFPLG+ K VR+LAR LD+A+K DSQDICFV G Y D+V+R++ G A+ Sbjct: 183 PQLDMLRFPLGEYAKPDVRELARRFDLDVAEKPDSQDICFVPSGHYSDIVERLSPGAAVP 242 Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMG------EPLFVVYLDKNSSRVIVGPRE 296 G+IVH++G++LGRH G+I+YTIGQRRGLG+ +PL+VV LD +RVIVGPRE Sbjct: 243 GEIVHVDGRVLGRHAGVIHYTIGQRRGLGLGAAVAGRASDPLYVVRLDAARARVIVGPRE 302 Query: 297 SLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKS 355 +LE + LR++NW+G+G D G + ++RS++ P P + G V FE Sbjct: 303 ALETRSVRLRDVNWIGEGELADLPEGGLEIEARVRSTRPPTPARLLPLAGGGAQVLFETG 362 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLS 398 E GV+ GQACVFY D ARVLGGG I+ ++ + E +L+ Sbjct: 363 EFGVSPGQACVFYDRDGARARVLGGGFIAAAEHAAEPTEPILA 405 >gi|242242895|ref|ZP_04797340.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis W23144] gi|242233670|gb|EES35982.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis W23144] Length = 372 Score = 507 bits (1307), Expect = e-141, Method: Composition-based stats. Identities = 136/379 (35%), Positives = 208/379 (54%), Gaps = 20/379 (5%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + KD+RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 2 SNKDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 VC+ I + +Y ++EE++ + V F Y G TP P V CN+ +KF L +L Sbjct: 59 IAVCNQIGIPYYAVNFEEQYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R R + M R +D +DQ+YFL +Q+QL + FP+GD++ Sbjct: 119 GADYVATGHYARIRRH----EDGHVEMLRGVDNNKDQTYFLNQLSQEQLSKVMFPIGDVE 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A E L A K DS ICF+ + + + + + A G+++ LNG+ +G+H Sbjct: 175 KSEVRRIAEEQNLATAKKKDSTGICFIGERNFKEFLSQYLP--AQSGEMLTLNGKKMGQH 232 Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +G++ YTIGQR GLG+ G+P FVV + N + + V ++L + + +++ Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLNDNILYVEQGFHHDALYSDYLIASDFSFVN 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 + + GF+C K R Q V+VQR N++ + V F + + GQA VFY + Sbjct: 293 PSEID--LEKGFECTAKFRYRQKDTKVYVQRENENSIRVTFAEPVRAITPGQAVVFYNQE 350 Query: 372 SNEARVLGGGIISGSKRSD 390 LGG I +++ Sbjct: 351 V----CLGGATIDDVYKNE 365 >gi|319403803|emb|CBI77387.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella rochalimae ATCC BAA-1498] Length = 409 Score = 507 bits (1306), Expect = e-141, Method: Composition-based stats. Identities = 228/392 (58%), Positives = 295/392 (75%), Gaps = 5/392 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL +PK+ R+VVAMSGGVDSSVVA LLK++GYDV+G+TLQLY+ A+ R G+CC Sbjct: 3 LNSLDLPGHPKNSRIVVAMSGGVDSSVVAGLLKKEGYDVVGITLQLYDHGAATHRVGACC 62 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV +T+ V HY+ DYEERFR AVI PFA SYA GETP+PCV CN+TVKFSD Sbjct: 63 AGQDIEDARRVAETLGVPHYILDYEERFREAVINPFAESYAHGETPIPCVSCNQTVKFSD 122 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ +LGAD LATGHYIRSR + R + R +D +RDQSYFLFATTQ+Q+ L Sbjct: 123 LLTTAYELGADALATGHYIRSRAH-----GAHRALFRSLDADRDQSYFLFATTQEQIDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGD+ KE VR++A EMGL +A+K DSQDICFV QGKY D++ ++ A G IVH+ Sbjct: 178 RFPLGDLSKERVREIATEMGLVVANKHDSQDICFVPQGKYSDIITKLRPEAANPGVIVHI 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +GQILG H+GI+NYTIGQRRG+GV+ GE L+V+YLD ++ VIVGPRE LE +++LR++ Sbjct: 238 DGQILGEHSGIVNYTIGQRRGIGVSTGEALYVIYLDVENACVIVGPREMLETRKLFLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD ++ +DG + VK+RS++ P + +VD +SE GVA GQACV Y Sbjct: 298 NWLGDEQLDNFPLDGIEVAVKVRSTRPPRSARLHYKQGSFFVDLLESESGVAPGQACVLY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 +S+EAR+LGGG I+ ++R+ E+ L V+ Sbjct: 358 NDNSHEARILGGGFITCAERAADTEKMLKKVL 389 >gi|152976810|ref|YP_001376327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189036217|sp|A7GT74|MNMA_BACCN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|152025562|gb|ABS23332.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cytotoxicus NVH 391-98] Length = 371 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 140/388 (36%), Positives = 204/388 (52%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL Q+QL FPLG Sbjct: 118 MALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLGQEQLSKTMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 173 ELKKPQIREMAKEAGLATATKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P FVV + + + V E L + +N Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGNGDPWFVVGKNLKENILYVDQGFHNELLYGDEVIATNVN 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ D E FKC K R Q+ V VQ +++ + + ++ + GQA VFY Sbjct: 291 WVSDRAKE----KEFKCTAKFRYRQEDNGVTVQIVDENTIRILCDEPIRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I RS + L Sbjct: 347 DGD----ECLGGATIDEVYRSGEQLDYL 370 >gi|90419040|ref|ZP_01226951.1| tRNA methyl transferase ((5-methylaminomethyl-2-thiouridylate)- methyltransferase) [Aurantimonas manganoxydans SI85-9A1] gi|90337120|gb|EAS50825.1| tRNA methyl transferase ((5-methylaminomethyl-2-thiouridylate)- methyltransferase) [Aurantimonas manganoxydans SI85-9A1] Length = 425 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 216/395 (54%), Positives = 278/395 (70%), Gaps = 5/395 (1%) Query: 2 VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61 + E NSLDL K P D RVVVAMSGGVDSSVVAA+LK GYDV+G+TLQLY++ + + Sbjct: 30 TLPEWPMSNSLDLPKPPADTRVVVAMSGGVDSSVVAAILKEQGYDVVGITLQLYDAGEGA 89 Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 +R GSCCAGQD++DARRV +T+ + HYV DYE+RFR AVI PFA+SY AGETP+PCV CN Sbjct: 90 RRAGSCCAGQDIHDARRVAETLGIHHYVLDYEDRFRKAVINPFAASYLAGETPIPCVACN 149 Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181 +TVKF DLL+ + LGAD LATGHYI SR R + RP DL+RDQSYFL+ TT Sbjct: 150 QTVKFRDLLATAQDLGADALATGHYIESR-----QNGAHRSLYRPADLDRDQSYFLYGTT 204 Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 Q+QL LRFPLG + K R+LA GL +A K DSQDICFV +G+Y DV++++ + Sbjct: 205 QEQLDFLRFPLGGLTKPQTRELAERHGLVVAAKPDSQDICFVAKGRYSDVIRKLRPEASE 264 Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH 301 GDIVHL+G+ LGRH GI++YTIGQRRGLG+A +PL+VV LD +++V+VGPRE+L Sbjct: 265 PGDIVHLDGRHLGRHAGIVHYTIGQRRGLGIAAADPLYVVALDPATAQVVVGPREALATR 324 Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVAS 361 R+ LR++NWLG D + FV++RS++ P P +Q + V+ E GVA Sbjct: 325 RLTLRDVNWLGRTDPADMAAADEEIFVRVRSTRPPAPARIQVENGVWTVELASGEDGVAP 384 Query: 362 GQACVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396 GQACVFY + A VLGGG+IS + R + + Sbjct: 385 GQACVFYRGEGVGAEVLGGGVISVTDRPQRAQRAA 419 >gi|329724654|gb|EGG61160.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis VCU144] Length = 372 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 139/379 (36%), Positives = 210/379 (55%), Gaps = 20/379 (5%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + KD+RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 2 SNKDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 VC+ I + +Y ++EE++ + V F Y G TP P V CN+ +KF L +L Sbjct: 59 IAVCNQIGIPYYAVNFEEQYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R R + DDG M R +D +DQ+YFL +Q+QL + FP+GD++ Sbjct: 119 GADYVATGHYARIRRH--DDG--HVEMLRGVDNNKDQTYFLNQLSQEQLSKVMFPIGDIE 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A E L A K DS ICF+ + + + + + A G+++ LNG+ +G+H Sbjct: 175 KSEVRRIAEEQNLATAKKKDSTGICFIGERNFKEFLSQYLP--AQSGEMLTLNGKKMGQH 232 Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +G++ YTIGQR GLG+ G+P FVV + N + + V ++L + + +++ Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLNDNVLYVEQGFHHDALYSDYLIASDYSFVN 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 + + GF+C K R Q V VQR N++ + V F + + GQA VFY + Sbjct: 293 PSEID--LEKGFECTAKFRYRQKDTKVNVQRENENSIRVTFAEPVRAITPGQAVVFYNQE 350 Query: 372 SNEARVLGGGIISGSKRSD 390 LGG I +++ Sbjct: 351 V----CLGGATIDDVYKNE 365 >gi|307300497|ref|ZP_07580277.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sinorhizobium meliloti BL225C] gi|307318362|ref|ZP_07597797.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sinorhizobium meliloti AK83] gi|306896044|gb|EFN26795.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sinorhizobium meliloti AK83] gi|306904663|gb|EFN35247.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sinorhizobium meliloti BL225C] Length = 398 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 234/380 (61%), Positives = 287/380 (75%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLD D+ P+D RVVVAMSGGVDSSVVA LLKR+GYDV+G+TLQLY+ A R GSCC Sbjct: 1 MNSLDFDRKPEDTRVVVAMSGGVDSSVVAGLLKREGYDVLGITLQLYDHGAAVHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRVC+TI + HYV DYE RFR VI PFA SY AGETP+PCV CN+TVKF+D Sbjct: 61 AGQDIDDARRVCETIGIPHYVLDYEARFRETVINPFAESYIAGETPIPCVACNQTVKFAD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRSR +R + RP D ERDQSYFLFATTQ+Q+ L Sbjct: 121 LLATAKELGADALATGHYIRSRPSPKPRYAGQRALYRPADAERDQSYFLFATTQEQIDYL 180 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K R LA EMGL +A K+DSQDICFV QGKY D+V ++ AL G+IVHL Sbjct: 181 RFPLGGLPKSETRALAEEMGLVVAKKADSQDICFVPQGKYSDIVSKLKPNAALAGEIVHL 240 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG H GI++YTIGQRRG+GVA GEPL+VVYLD S RVIVGP+E+LE R+YLR++ Sbjct: 241 DGRVLGAHEGILHYTIGQRRGIGVATGEPLYVVYLDARSRRVIVGPKEALETRRVYLRDV 300 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD E A GF+CF K+RS++ P P ++ + +G+YV+ + E GVA GQAC Y Sbjct: 301 NWLGDEELEAAAGQGFECFAKVRSTRRPAPAVLKSDAEGLYVELVEGEAGVAPGQACALY 360 Query: 369 TSDSNEARVLGGGIISGSKR 388 + +ARV GGG I S+R Sbjct: 361 SGTGEDARVYGGGFIRRSER 380 >gi|312865771|ref|ZP_07725993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus downei F0415] gi|311098646|gb|EFQ56868.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus downei F0415] Length = 374 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 133/391 (34%), Positives = 193/391 (49%), Gaps = 25/391 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + + RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D Sbjct: 1 MMTDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 58 KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAKYRAGRTPNPDVMCNKEIKFKAFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + V D M R D +DQ+YFL +Q+QL + FPLG Sbjct: 118 MSLGADYVATGHYAQ----VSRDEDGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR +A E GL A K DS ICF+ + + + + A G ++ L+G+ + Sbjct: 174 HLEKPEVRKIAEEAGLATAKKKDSTGICFIGEKNFKEFLSNYLP--AQPGRMLTLDGKDM 231 Query: 254 GRHNGIINYTI-----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 G+H G++ YTI G P FVV D + + + VG ++L + Sbjct: 232 GQHAGLMYYTIGQRGGLGIGGQQGGGNAPWFVVGKDLSQNILYVGQGFYHDALMSTSLKA 291 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 I++ D E +C K R Q V V D V F++ + + GQA Sbjct: 292 STIHFTRDTPEE----FTMECTAKFRYRQPDSKVTVHVKGDQAEVVFDQPQRAITPGQAV 347 Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEESL 396 VFY D LGGGII + +++ V + + Sbjct: 348 VFYDGD----ECLGGGIIDNAYKNEVVCQYI 374 >gi|121602707|ref|YP_989294.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella bacilliformis KC583] gi|166234845|sp|A1UTJ1|MNMA_BARBK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|120614884|gb|ABM45485.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella bacilliformis KC583] Length = 391 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 234/392 (59%), Positives = 290/392 (73%), Gaps = 5/392 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL P++ RVVVAMSGGVDSSVVA LLKR+GYDV+G+TLQLY+ A+ R G+CC Sbjct: 3 LNSLDLPGPPENSRVVVAMSGGVDSSVVAGLLKREGYDVVGITLQLYDHGAATHRAGACC 62 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV +T+ + +YV DYE RFR AVI PFA SYA GETP+PCV CN+TVKF+D Sbjct: 63 AGQDIEDARRVAETLRIPYYVLDYESRFREAVIDPFAESYARGETPIPCVACNQTVKFAD 122 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL R+LGAD LATGHYIRS Y R + RP+D ERDQSYFLFATTQ+Q+ L Sbjct: 123 LLVTARELGADALATGHYIRSVSY-----GTHRALFRPLDSERDQSYFLFATTQEQIDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG++ K VR++A+EMGL +ADK DSQDICFV QGKY DV+ ++ + GDIVH+ Sbjct: 178 RFPLGNLPKARVREIAKEMGLTVADKHDSQDICFVPQGKYSDVIAKLRPEASNPGDIVHI 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 NGQILG+H+GIINYT+GQRRG+GVA GE L+V++LD ++RVIVGPRE LE H+++LR++ Sbjct: 238 NGQILGQHSGIINYTVGQRRGIGVATGEALYVIFLDVENARVIVGPREMLETHKLFLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD E+ D KIRS++ P P + + VD + E VA GQACVFY Sbjct: 298 NWLGDERLENFPSDCIDVAAKIRSTRPPRPARLYYKEGIFSVDLLEGESSVAPGQACVFY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 + ARVLGGG I+ S+RS EE L V+ Sbjct: 358 NESGDGARVLGGGFITHSERSTDAEERLQRVL 389 >gi|15966466|ref|NP_386819.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sinorhizobium meliloti 1021] gi|24638324|sp|Q92MB5|MNMA_RHIME RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|15075737|emb|CAC47292.1| Putative tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Sinorhizobium meliloti 1021] Length = 398 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 234/380 (61%), Positives = 287/380 (75%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLD D+ P+D RVVVAMSGGVDSSVVA LLKR+GYDV+G+TLQLY+ A R GSCC Sbjct: 1 MNSLDFDRKPEDTRVVVAMSGGVDSSVVAGLLKREGYDVLGITLQLYDHGAAVHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRVC+TI + HYV DYE RFR VI PFA SY AGETP+PCV CN+TVKF+D Sbjct: 61 AGQDIDDARRVCETIGIPHYVLDYEARFRETVINPFAESYIAGETPIPCVACNQTVKFAD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRSR +R + RP D ERDQSYFLFATTQ+Q+ L Sbjct: 121 LLATAKELGADALATGHYIRSRPSPKPRYAGQRALYRPADAERDQSYFLFATTQEQIDYL 180 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K R LA EMGL +A K+DSQDICFV QGKY D+V ++ AL G+IVHL Sbjct: 181 RFPLGGLPKSETRALAEEMGLVVAKKADSQDICFVPQGKYSDIVSKLKPNAALAGEIVHL 240 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG H GI++YTIGQRRG+GVA GEPL+VVYLD S RVIVGP+E+LE R+YLR++ Sbjct: 241 DGRVLGAHEGILHYTIGQRRGIGVATGEPLYVVYLDSRSRRVIVGPKEALETRRVYLRDV 300 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD E A GF+CF K+RS++ P P ++ + +G+YV+ + E GVA GQAC Y Sbjct: 301 NWLGDEELEAAAGQGFECFAKVRSTRRPAPAVLKSDAEGLYVELVEGEAGVAPGQACALY 360 Query: 369 TSDSNEARVLGGGIISGSKR 388 + +ARV GGG I S+R Sbjct: 361 SGTGEDARVYGGGFIRRSER 380 >gi|16803552|ref|NP_465037.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes EGD-e] gi|47097209|ref|ZP_00234773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes str. 1/2a F6854] gi|224500677|ref|ZP_03669026.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes Finland 1988] gi|224501548|ref|ZP_03669855.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL R2-561] gi|254828254|ref|ZP_05232941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes FSL N3-165] gi|254898322|ref|ZP_05258246.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes J0161] gi|254912186|ref|ZP_05262198.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes J2818] gi|254936514|ref|ZP_05268211.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes F6900] gi|284801902|ref|YP_003413767.1| hypothetical protein LM5578_1657 [Listeria monocytogenes 08-5578] gi|284995044|ref|YP_003416812.1| hypothetical protein LM5923_1609 [Listeria monocytogenes 08-5923] gi|24638317|sp|Q8Y714|MNMA_LISMO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|16410941|emb|CAC99590.1| lmo1512 [Listeria monocytogenes EGD-e] gi|47014423|gb|EAL05392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes str. 1/2a F6854] gi|258600642|gb|EEW13967.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes FSL N3-165] gi|258609108|gb|EEW21716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes F6900] gi|284057464|gb|ADB68405.1| hypothetical protein LM5578_1657 [Listeria monocytogenes 08-5578] gi|284060511|gb|ADB71450.1| hypothetical protein LM5923_1609 [Listeria monocytogenes 08-5923] gi|293590159|gb|EFF98493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes J2818] Length = 371 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 135/388 (34%), Positives = 200/388 (51%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + N D+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L Sbjct: 58 DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + + + R +D +DQ+YFL +Q QL + FPLG Sbjct: 118 ESLGADYVATGHYAQVKKVGDE-----IELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K VR++A++ GL ADK DS ICF+ + + + A G++ L+G++L Sbjct: 173 AMEKTEVREIAKKAGLATADKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLDGEVL 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP FVV D + + V E+L + +I+ Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 + + + +C K R Q V V +DG V F + GQA VFY Sbjct: 291 FTTNAEKPKTI----ECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGGG I ++ + + Sbjct: 347 DGDV----CLGGGTIDTVWKNGQKLDYV 370 >gi|16800615|ref|NP_470883.1| tRNA-specific 2-thiouridylase MnmA [Listeria innocua Clip11262] gi|24638323|sp|Q92BK1|MNMA_LISIN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|16414020|emb|CAC96778.1| lin1547 [Listeria innocua Clip11262] Length = 371 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 138/383 (36%), Positives = 197/383 (51%), Gaps = 23/383 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + N D+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L Sbjct: 58 DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + + + R +D +DQ+YFL +Q QL + FPLG Sbjct: 118 ESLGADYVATGHYAQVKKVGDE-----IELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K VR++A + GL A+K DS ICF+ + + + A GD+ LNG++L Sbjct: 173 GMEKTEVREIATKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGDMRTLNGEVL 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP FVV D ++ + V +SL + +I+ Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKNNVLFVEQGFHHDSLYSDSLIATDIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 + + F C K R Q V V +DG V F + GQA VFY Sbjct: 291 FTTNS----EKPKTFVCTAKFRYRQTDTKVTVNMREDGTAEVVFADPVRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDA 391 D LGGG I + A Sbjct: 347 DGDI----CLGGGTIDTVWKKGA 365 >gi|319651666|ref|ZP_08005793.1| TrmU protein [Bacillus sp. 2_A_57_CT2] gi|317396733|gb|EFV77444.1| TrmU protein [Bacillus sp. 2_A_57_CT2] Length = 371 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 147/383 (38%), Positives = 203/383 (53%), Gaps = 23/383 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K+PKD RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MKKDPKDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 NDVIRVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY R G+ M R +D +DQ+YFL TQ QL + FP+G Sbjct: 118 MSLGADYLATGHYARVEFRDGE-----YKMLRGLDDNKDQTYFLNQLTQDQLEKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 D++K VR+LA++ GL A K DS ICF+ + + + + A G++ ++G+I+ Sbjct: 173 DIEKSKVRELAKDAGLATAAKKDSTGICFIGERNFKEFLGNYLP--AQPGNMETMDGKIV 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP F + D + + VG E L I + Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGAGEPWFAIGKDLKRNVLYVGQGFHNEMLYSDSIIAVNAS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W+ F+C K R Q V VQ DG V V F++ V GQA VFY Sbjct: 291 WVT----HSEQPQEFECTAKFRYRQADSRVKVQILGDGKVQVIFDEPIRAVTPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDA 391 D LGGG I + Sbjct: 347 NGD----ECLGGGTIDKIFKDGK 365 >gi|27468222|ref|NP_764859.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis ATCC 12228] gi|57867112|ref|YP_188761.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus epidermidis RP62A] gi|282875953|ref|ZP_06284820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis SK135] gi|293366421|ref|ZP_06613099.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|30173406|sp|Q8CSA5|MNMA_STAES RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71153357|sp|Q5HNS9|MNMA_STAEQ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|27315768|gb|AAO04903.1|AE016748_137 (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis ATCC 12228] gi|57637770|gb|AAW54558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis RP62A] gi|281294978|gb|EFA87505.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis SK135] gi|291319455|gb|EFE59823.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis M23864:W2(grey)] gi|329735247|gb|EGG71539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis VCU045] gi|329737370|gb|EGG73624.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis VCU028] Length = 372 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 139/379 (36%), Positives = 210/379 (55%), Gaps = 20/379 (5%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + KD+RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 2 SNKDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 VC+ I + +Y ++EE++ + V F Y G TP P V CN+ +KF L +L Sbjct: 59 IAVCNQIGIPYYAVNFEEQYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R R + DDG M R +D +DQ+YFL +Q+QL + FP+GD++ Sbjct: 119 GADYVATGHYARIRRH--DDG--HVEMLRGVDNNKDQTYFLNQLSQEQLSKVMFPIGDIE 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A E L A K DS ICF+ + + + + A G+++ LNG+ +G+H Sbjct: 175 KSEVRRIAEEQNLATAKKKDSTGICFIGERNFKEFLSHYLP--AQSGEMLTLNGKKMGQH 232 Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +G++ YTIGQR GLG+ G+P FVV + N + + V ++L + + +++ Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLNDNVLYVEQGFHHDALYSDYLIASDYSFVN 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 + + GF+C K R Q V+VQR N++ + V F + + GQA VFY + Sbjct: 293 PSEID--LEKGFECTAKFRYRQKDTKVYVQRENENSIRVTFAEPVRAITPGQAVVFYNQE 350 Query: 372 SNEARVLGGGIISGSKRSD 390 LGG I +++ Sbjct: 351 V----CLGGATIDDVYKNE 365 >gi|317128230|ref|YP_004094512.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cellulosilyticus DSM 2522] gi|315473178|gb|ADU29781.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cellulosilyticus DSM 2522] Length = 367 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 136/381 (35%), Positives = 215/381 (56%), Gaps = 21/381 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ +++RVVV MSGGVDSSV A LLK++GY VIG+ ++ ++ + G C A +D Sbjct: 2 MNTEKQNIRVVVGMSGGVDSSVAAYLLKQEGYQVIGIFMKNWDD---TDEFGVCTATEDY 58 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ +++ +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 59 NDVIRVCNQLDIPYYAVNFEKEYWDKVFTYFLNEYRAGRTPNPDVMCNKEIKFKAFLDHA 118 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R R D+G + R +D +DQ+YFL A ++ QL + FP+G Sbjct: 119 MSLGADYVATGHYARVRH--SDNG---VELLRGIDENKDQTYFLNALSEDQLKHVLFPIG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR++A+E L A K DS ICF+ + + + + + A G++ L+G++ Sbjct: 174 EIEKPRVREIAKEAHLATATKKDSTGICFIGERNFKEFLSQYLP--AQRGEMQTLDGEVK 231 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 G H+G++ YT+GQR+GLG+ GEP FV+ D + + ++VG +L + ++N Sbjct: 232 GYHDGLMYYTLGQRQGLGIGGAGEPWFVIDKDLDKNILLVGQGYHHPALYSSGLIAEDVN 291 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W+ L + F C K R Q V V +DG V V F++ E + GQ+ VFY Sbjct: 292 WINQHLIKGK--KEFHCTAKFRYRQKDQGVTVSIMNDGQVKVIFDEQERAITPGQSVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRS 389 + LGGG+I +S Sbjct: 350 DGEV----CLGGGVIDKVIKS 366 >gi|293364413|ref|ZP_06611139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus oralis ATCC 35037] gi|291317259|gb|EFE57686.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus oralis ATCC 35037] Length = 415 Score = 506 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 140/393 (35%), Positives = 198/393 (50%), Gaps = 26/393 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L + N K RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A + Sbjct: 41 LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 96 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D D V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 97 DYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 156 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FP Sbjct: 157 YAMTLGADYIATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 212 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ Sbjct: 213 LGHLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGR 270 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 +G H G++ YTIGQR GLG+ P FVV D + + + VG +SL + Sbjct: 271 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSQNILYVGQGFYHDSLMSTSL 330 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 ++++ D E +C K R Q V V D V F + + + GQ Sbjct: 331 EASQVHFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQ 386 Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396 A VFY + LGGG+I + R V + + Sbjct: 387 AVVFYDGE----ECLGGGLIDNAYRDGQVCQYI 415 >gi|257892743|ref|ZP_05672396.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium 1,231,408] gi|257829122|gb|EEV55729.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium 1,231,408] Length = 373 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 141/388 (36%), Positives = 202/388 (52%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSQTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + N V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AKVAAQIGIPYYSVNFEKEYWNRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R +D +DQ+YFL +Q+QL FPLG M+ Sbjct: 120 GADYVATGHYAQ----VTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGME 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + A +G++V L+G++ G+H Sbjct: 176 KSEVRAIAERAGLATAKKKDSTGICFIGEKNFKQFLSNYLP--AKKGNMVTLDGEVKGQH 233 Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 G++ YTIGQR+GLG+ EP FVV D ++ + VG +L + EI+ Sbjct: 234 AGLMYYTIGQRQGLGIGGGGNSQEPWFVVGKDLATNTLYVGQGFHHPALYATSLDASEIH 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368 + + + + FKC K R Q VPV V+ DD V F++ + GQA VFY Sbjct: 294 FTTN----EPMPKEFKCTAKFRYRQQDVPVTVRLLDDNRAEVVFDEPVRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGG+I + + V + + Sbjct: 350 DG----MECLGGGLIDHAYQETKVLQYV 373 >gi|169829330|ref|YP_001699488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lysinibacillus sphaericus C3-41] gi|205816875|sp|B1HUL3|MNMA_LYSSC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|168993818|gb|ACA41358.1| Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lysinibacillus sphaericus C3-41] Length = 374 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 134/381 (35%), Positives = 206/381 (54%), Gaps = 22/381 (5%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 ++P +RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ ++ + G C A +D Sbjct: 4 TRDPSQIRVVVGMSGGVDSSVAAYLLKQQGYEVIGIFMKNWDD---TDENGVCTATEDYD 60 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 D +VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 61 DVIKVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHAM 120 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD LATGHY R + G M R +D +DQ+YFL +Q+QL + FP+GD Sbjct: 121 SLGADYLATGHYAR----IDRSGDGEVKMLRGVDNNKDQTYFLNQLSQEQLAHVMFPIGD 176 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K+ VR +A E GL A K DS ICF+ + + + + + A G++ ++G ++G Sbjct: 177 IEKKEVRKIAEEAGLATAKKKDSTGICFIGERNFKEFLSQFLP--AQPGNMETMDGVVMG 234 Query: 255 RHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 +H+G++ YT+GQR GLG+ GEP FV+ D + ++VG E L + ++N+ Sbjct: 235 KHDGLMYYTLGQRHGLGIGGDGEPWFVLGKDLERNVLLVGQGFDNEHLYSTSLSAVKMNY 294 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + F C K R Q PV V+ DG ++ F + + GQA V Y Sbjct: 295 TS----TKKLPGKFSCTAKFRYRQTDTPVEVELLADGRTHITFAEPVRAITPGQAVVLYD 350 Query: 370 SDSNEARVLGGGIISGSKRSD 390 + +GGG I +S+ Sbjct: 351 GE----ECIGGGTIDEVFKSN 367 >gi|322391188|ref|ZP_08064660.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus peroris ATCC 700780] gi|321145941|gb|EFX41330.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus peroris ATCC 700780] Length = 453 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 139/393 (35%), Positives = 198/393 (50%), Gaps = 26/393 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L + N K RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A + Sbjct: 79 LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 134 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D D V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 135 DYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 194 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FP Sbjct: 195 YAMTLGADYVATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 250 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR +A E GL A K DS ICF+ + + + + A G ++ ++G+ Sbjct: 251 LGHLEKPEVRKIAEEAGLATAKKKDSTGICFIGEKNFKEFLGNYLP--AQPGRMMTVDGR 308 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 +G H G++ YTIGQR GLG+ P FVV D + + + VG E+L + Sbjct: 309 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHEALMSTSL 368 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 ++++ D E +C K R Q V V D V F + + + GQ Sbjct: 369 EASQVHFTRDMPEE----FTLECIAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQ 424 Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396 A VFY + LGGG+I + R V + + Sbjct: 425 AVVFYDGE----ECLGGGLIDNAYRDGKVCQYI 453 >gi|257897740|ref|ZP_05677393.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium Com15] gi|257835652|gb|EEV60726.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium Com15] Length = 373 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 141/388 (36%), Positives = 202/388 (52%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSQTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AKVAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R +D +DQ+YFL +Q+QL FPLG M+ Sbjct: 120 GADYVATGHYAQ----VTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGME 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + A +G++V L+G+I G+H Sbjct: 176 KSEVRAIAERAGLATAKKKDSTGICFIGEKNFKQFLSNYLP--AKKGNMVTLDGEIKGQH 233 Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 G++ YTIGQR+GLG+ EP FVV D ++ + VG +L + EI+ Sbjct: 234 AGLMYYTIGQRQGLGIGGGGDSQEPWFVVGKDLATNTLYVGQGFHHPALYATSLDASEIH 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368 + + + + FKC K R Q VPV V+ DD V F++ + GQA VFY Sbjct: 294 FTTN----EPMPKEFKCTAKFRYRQQDVPVTVRLLDDNRAEVVFDEPVRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGG+I + + V + + Sbjct: 350 DG----MECLGGGLIDHAYQETKVLQYV 373 >gi|304317430|ref|YP_003852575.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778932|gb|ADL69491.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 372 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 138/383 (36%), Positives = 213/383 (55%), Gaps = 24/383 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + ++ K+++VVV MSGGVDSSV A LLK GYDV+G+ ++ ++ S G C A +D Sbjct: 1 MIESNKNIKVVVGMSGGVDSSVSALLLKEQGYDVVGIFMKNWDEEDDS---GYCTAAEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVCD I + +Y ++ + + + V F Y +G TP P V CN+ +KF L + Sbjct: 58 EDVVRVCDKIGIPYYSINFTQEYWDRVFKYFLDEYRSGRTPNPDVMCNKEIKFKAFLDFS 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 ++GAD +ATGHY R G + M + +D +DQ+YFL Q+QL FP+G Sbjct: 118 LKIGADYIATGHYARIEYSNG-----KYRMLKGVDKNKDQTYFLCELGQKQLSKTIFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 + K VR++AR+ GL ADK DS ICF+ + K+ + + + A G+I L+G++L Sbjct: 173 HLNKFEVREIARKAGLKTADKKDSTGICFIGERKFKEFLNQFLP--AKPGEIRDLSGRVL 230 Query: 254 GRHNGIINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 G+H+G++ YT+GQRR G+ GEP FVV D ++ + V +L + ++ ++ Sbjct: 231 GKHDGLMFYTLGQRRGLGIGGIGTGEPWFVVDKDVENNILYVAQGEKNPALYSYALFTKD 290 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 +NW+ + + D F+C K R Q V V DDG +V F+K + V GQ VF Sbjct: 291 VNWIDNSI----EADTFRCKAKFRYRQPDQDVTVYAKDDGYFVVFDKPQRAVTPGQFVVF 346 Query: 368 YTSDSNEARVLGGGIISGSKRSD 390 Y + LGGG+I + + Sbjct: 347 YDGE----YCLGGGVIDSIIKDE 365 >gi|306826063|ref|ZP_07459399.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431779|gb|EFM34759.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 415 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 139/393 (35%), Positives = 199/393 (50%), Gaps = 26/393 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L + N K RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A + Sbjct: 41 LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 96 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D D V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 97 DYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 156 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FP Sbjct: 157 YAMTLGADYVATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 212 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ Sbjct: 213 LGHLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGR 270 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 +G H G++ YTIGQR GLG+ P FVV D + + + VG +SL + Sbjct: 271 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSL 330 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 ++++ + E +C K R Q V V D V F + + + GQ Sbjct: 331 EASQVHFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQ 386 Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396 A VFY + LGGG+I + R+ V + + Sbjct: 387 AVVFYDGE----ECLGGGLIDNAYRNGKVCQYI 415 >gi|299822830|ref|ZP_07054716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria grayi DSM 20601] gi|299816359|gb|EFI83597.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria grayi DSM 20601] Length = 370 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 133/381 (34%), Positives = 204/381 (53%), Gaps = 23/381 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+ ++RVVV MSGGVDSSV A LLK+ GYDV+G+ ++ ++ + G C A +D D Sbjct: 2 KDNSNIRVVVGMSGGVDSSVTAYLLKQQGYDVVGIFMKNWDD---TDEFGVCTATEDYED 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 RV + I + +Y ++E+++ + V F + Y G TP P V CN+ +KF L Sbjct: 59 VIRVANQIGIPYYAVNFEKQYWDKVFTYFLAEYKLGRTPNPDVMCNKEIKFKAFLEHAES 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY R+ + G+ + R +D +DQ+YFL +Q+QL + FPLG M Sbjct: 119 LGADYVATGHYARTEIVDGE-----VQLLRGVDNNKDQTYFLNQLSQEQLSKVMFPLGGM 173 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VRD+A++ GL A+K DS ICF+ + + + A G++ L G+ +G+ Sbjct: 174 EKSEVRDIAQKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLTGKRMGK 231 Query: 256 HNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWL 311 H+G++ YTIGQR GLG+ GEP FV D ++ + V +SL + ++++ Sbjct: 232 HDGLMYYTIGQRHGLGIGGDGEPWFVAGKDLENNVLFVEQGFHHDSLYSDMLIATDVSFT 291 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 + E F C K R Q V V ++G V F++ + GQA VFY Sbjct: 292 SNRPKE----MVFHCTAKFRYRQVDSGVTVYLTENGTAKVVFDEPVRAITPGQAVVFYDG 347 Query: 371 DSNEARVLGGGIISGSKRSDA 391 D LGG I +++ Sbjct: 348 DI----CLGGATIDTVYKNEK 364 >gi|227823283|ref|YP_002827255.1| tRNA-specific 2-thiouridylase MnmA [Sinorhizobium fredii NGR234] gi|254811457|sp|C3MI00|MNMA_RHISN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|227342284|gb|ACP26502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sinorhizobium fredii NGR234] Length = 398 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 233/380 (61%), Positives = 287/380 (75%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLD D+ P+D RVVVAMSGGVDSSVVA LLKR+GYDV+G+TLQLY+ A R GSCC Sbjct: 1 MNSLDFDRKPEDTRVVVAMSGGVDSSVVAGLLKREGYDVLGITLQLYDHGAAVHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRVC+T+ + HYV DYE RFR VI PFA SY AGETP+PCV CN+TVKF+D Sbjct: 61 AGQDIDDARRVCETLGIPHYVLDYEARFRETVINPFAESYIAGETPIPCVACNQTVKFAD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRSR + +R + RP D ERDQSYFLFATTQ+Q+ L Sbjct: 121 LLATAKELGADALATGHYIRSRPSPKPRYQGQRALYRPTDAERDQSYFLFATTQEQIDYL 180 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG++ K R LA EMGL +A K+DSQDICFV QGKY D+V ++ AL G+IVHL Sbjct: 181 RFPLGNLSKPETRALAEEMGLVVAKKADSQDICFVPQGKYSDIVSKLKPNAALGGEIVHL 240 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG H GI++YTIGQRRG+GVA GEPL+VVYLD S RVIVGP+E+LE R+YLR++ Sbjct: 241 DGRVLGTHEGILHYTIGQRRGIGVATGEPLYVVYLDARSRRVIVGPKEALETRRVYLRDV 300 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD + A GF CF K+RS++ P P ++ + DG+YV+ E GVA GQAC Y Sbjct: 301 NWLGDEEIDAAASRGFACFAKVRSTRQPAPAEMKCDADGIYVELVDGEAGVAPGQACALY 360 Query: 369 TSDSNEARVLGGGIISGSKR 388 + +ARV GGG I S+R Sbjct: 361 SGTGEDARVYGGGFIRKSER 380 >gi|227552294|ref|ZP_03982343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TX1330] gi|257895129|ref|ZP_05674782.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium Com12] gi|293377883|ref|ZP_06624064.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium PC4.1] gi|227178565|gb|EEI59537.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TX1330] gi|257831694|gb|EEV58115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium Com12] gi|292643430|gb|EFF61559.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium PC4.1] Length = 373 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 140/388 (36%), Positives = 202/388 (52%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSQTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AKVAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R +D +DQ+YFL +Q+QL FPLG M+ Sbjct: 120 GADYVATGHYAQ----VTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGME 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + A +G++V L+G++ G+H Sbjct: 176 KSEVRAIAERAGLATAKKKDSTGICFIGEKNFKQFLSNYLP--AKKGNMVTLDGEVKGQH 233 Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 G++ YTIGQR+GLG+ EP FVV D ++ + VG +L + EI+ Sbjct: 234 AGLMYYTIGQRQGLGIGGGGDSQEPWFVVGKDLATNTLYVGQGFHHPALYATSLDASEIH 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368 + + + + FKC K R Q VPV V+ DD V F++ + GQA VFY Sbjct: 294 FTTN----EPMPKEFKCTAKFRYRQQDVPVTVRLLDDNRAEVVFDEPVRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGG+I + + V + + Sbjct: 350 DG----MECLGGGLIDHAYQETKVLQYV 373 >gi|156934382|ref|YP_001438298.1| tRNA-specific 2-thiouridylase MnmA [Cronobacter sakazakii ATCC BAA-894] gi|166234851|sp|A7MFV2|MNMA_ENTS8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|156532636|gb|ABU77462.1| hypothetical protein ESA_02213 [Cronobacter sakazakii ATCC BAA-894] Length = 369 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 126/378 (33%), Positives = 195/378 (51%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGED---YCTAASDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGIELHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R D + + R +D +DQSYFL+ Q+ FP+G++ Sbjct: 120 LGADYIATGHYVRRA-----DVDGKSRLLRGLDGNKDQSYFLYTLGHDQVAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E+ L A K DS ICF+ + K+ + + R A G IV ++G +G Sbjct: 175 EKPEVRRIAEELDLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIVTVDGDTIGE 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ EP +VV D ++ +IV L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKDGGEEPWYVVDKDVENNILIVAQGHDHPRLMSVGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366 ++W+ + V F C VK R Q +P V+ +DD + V F++ V GQ+ V Sbjct: 293 LHWVD----REPVTAPFTCSVKTRYRQADIPCTVRPLDDDRIEVVFDEPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 349 FYLGEV----CLGGGIIE 362 >gi|315612257|ref|ZP_07887171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis ATCC 49296] gi|315315650|gb|EFU63688.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis ATCC 49296] Length = 415 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 139/393 (35%), Positives = 198/393 (50%), Gaps = 26/393 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L + N K RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A + Sbjct: 41 LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 96 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D D V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 97 DYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 156 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FP Sbjct: 157 YAMTLGADYVATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 212 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ Sbjct: 213 LGHLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGR 270 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 +G H G++ YTIGQR GLG+ P FVV D + + + VG +SL + Sbjct: 271 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSL 330 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 ++++ + E +C K R Q V V D V F + + + GQ Sbjct: 331 EASQVHFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQ 386 Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396 A VFY + LGGG+I + R V + + Sbjct: 387 AVVFYDGE----ECLGGGLIDNAYRDGQVCQYI 415 >gi|77459818|ref|YP_349325.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas fluorescens Pf0-1] gi|123604062|sp|Q3KA70|MNMA_PSEPF RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|77383821|gb|ABA75334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas fluorescens Pf0-1] Length = 374 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 125/383 (32%), Positives = 197/383 (51%), Gaps = 26/383 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 + RV+V MSGGVDSSV A LL GY+V G+ ++ + ++ C A D+ Sbjct: 6 PSDTSKKRVIVGMSGGVDSSVSALLLIEQGYEVEGLFMKNWEEDDGTE---YCTAMDDLA 62 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ VCD I + + ++ + + V F + Y AG TP P + CNR +KF L Sbjct: 63 DAQAVCDKIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYAM 122 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+ Sbjct: 123 MLGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFPVGE 177 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K VR +A + L A K DS ICF+ + ++ D +K+ A G+I G+++G Sbjct: 178 LEKPEVRAIAEKYELATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGEIKTTEGEVIG 235 Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 RH+G++ +TIGQR+GLG+ EP +V+ D +++ +IVG L + Sbjct: 236 RHHGLMYHTIGQRQGLGIGGLKDAGDEPWYVLRKDLDTNELIVGQGNNHPWLFSSALLAS 295 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 EI W+ + K+R Q +++ D G F++ + V GQ+ V Sbjct: 296 EIYWVNPIDLSQP----LRLTAKVRYRQSDQACTLEKTDTGYRAVFDEPQRAVTPGQSVV 351 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 FY + LGGG+I ++ Sbjct: 352 FYDGEI----CLGGGVIEVAEPW 370 >gi|69244797|ref|ZP_00603021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium DO] gi|257879151|ref|ZP_05658804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium 1,230,933] gi|257882042|ref|ZP_05661695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium 1,231,502] gi|257883775|ref|ZP_05663428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium 1,231,501] gi|257889981|ref|ZP_05669634.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium 1,231,410] gi|258615538|ref|ZP_05713308.1| tRNA-specific 2-thiouridylase MnmA [Enterococcus faecium DO] gi|260560202|ref|ZP_05832379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium C68] gi|293553765|ref|ZP_06674382.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium E1039] gi|293563497|ref|ZP_06677945.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium E1162] gi|293569057|ref|ZP_06680369.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium E1071] gi|293571269|ref|ZP_06682303.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium E980] gi|294622809|ref|ZP_06701763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium U0317] gi|314947767|ref|ZP_07851174.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TX0082] gi|68196151|gb|EAN10581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium DO] gi|257813379|gb|EEV42137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium 1,230,933] gi|257817700|gb|EEV45028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium 1,231,502] gi|257819613|gb|EEV46761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium 1,231,501] gi|257826341|gb|EEV52967.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium 1,231,410] gi|260073769|gb|EEW62094.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium C68] gi|291588238|gb|EFF20074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium E1071] gi|291597767|gb|EFF28905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium U0317] gi|291602058|gb|EFF32293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium E1039] gi|291604499|gb|EFF33985.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium E1162] gi|291608676|gb|EFF37964.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium E980] gi|313645747|gb|EFS10327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TX0082] Length = 373 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 140/388 (36%), Positives = 202/388 (52%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AKVAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R +D +DQ+YFL +Q+QL FPLG M+ Sbjct: 120 GADYVATGHYAQ----VTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGME 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + A +G++V L+G++ G+H Sbjct: 176 KSEVRAIAERAGLATAKKKDSTGICFIGEKNFKQFLSNYLP--AKKGNMVTLDGEVKGQH 233 Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 G++ YTIGQR+GLG+ EP FVV D ++ + VG +L + EI+ Sbjct: 234 AGLMYYTIGQRQGLGIGGGGDSQEPWFVVGKDLATNTLYVGQGFHHPALYATSLDASEIH 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368 + + + + FKC K R Q VPV V+ DD V F++ + GQA VFY Sbjct: 294 FTTN----EPMPKEFKCTAKFRYRQQDVPVTVRLLDDNRAEVVFDEPVRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGG+I + + V + + Sbjct: 350 DG----MECLGGGLIDHAYQETKVLQYV 373 >gi|261208073|ref|ZP_05922748.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TC 6] gi|289565497|ref|ZP_06445945.1| tRNA methyl transferase [Enterococcus faecium D344SRF] gi|294615054|ref|ZP_06694941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium E1636] gi|294617680|ref|ZP_06697306.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium E1679] gi|314938375|ref|ZP_07845666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TX0133a04] gi|314942298|ref|ZP_07849146.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TX0133C] gi|314951434|ref|ZP_07854484.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TX0133A] gi|314993154|ref|ZP_07858539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TX0133B] gi|314996038|ref|ZP_07861116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TX0133a01] gi|260077657|gb|EEW65373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TC 6] gi|289162695|gb|EFD10547.1| tRNA methyl transferase [Enterococcus faecium D344SRF] gi|291592089|gb|EFF23711.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium E1636] gi|291596054|gb|EFF27321.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium E1679] gi|313589792|gb|EFR68637.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TX0133a01] gi|313592331|gb|EFR71176.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TX0133B] gi|313596391|gb|EFR75236.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TX0133A] gi|313598915|gb|EFR77760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TX0133C] gi|313642273|gb|EFS06853.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium TX0133a04] Length = 373 Score = 505 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 141/388 (36%), Positives = 202/388 (52%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AKVAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R +D +DQ+YFL +Q+QL FPLG M+ Sbjct: 120 GADYVATGHYAQ----VTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGME 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + A +GD+V L+G++ G+H Sbjct: 176 KSEVRAIAERAGLATAKKKDSTGICFIGEKNFKQFLSNYLP--AKKGDMVTLDGEVKGQH 233 Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 G++ YTIGQR+GLG+ EP FVV D ++ + VG +L + EI+ Sbjct: 234 AGLMYYTIGQRQGLGIGGGGDSQEPWFVVGKDLATNTLYVGQGFHHPALYATSLDASEIH 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368 + + + + FKC K R Q VPV V+ DD V F++ + GQA VFY Sbjct: 294 FTTN----EPMPKEFKCTAKFRYRQQDVPVTVRLLDDNRAEVVFDEPVRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGG+I + + V + + Sbjct: 350 DG----MECLGGGLIDHAYQETKVLQYV 373 >gi|85713551|ref|ZP_01044541.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrobacter sp. Nb-311A] gi|85699455|gb|EAQ37322.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrobacter sp. Nb-311A] Length = 433 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 216/397 (54%), Positives = 281/397 (70%), Gaps = 4/397 (1%) Query: 5 EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64 + LNSLDL+ P+D RVVVAMSGGVDSSV AALLK +GYDV+G+TLQLY+ A+ RK Sbjct: 31 TGSMLNSLDLEGRPQDTRVVVAMSGGVDSSVTAALLKSEGYDVVGITLQLYDHGAATHRK 90 Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 G+CCAGQD++DAR V + + V HYV DYE RFR VI FA SYA+GETP+PC++CNR V Sbjct: 91 GACCAGQDIHDARNVAERLGVPHYVLDYESRFRETVIENFADSYASGETPVPCIECNRLV 150 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 KF DLL+ R+LGA LATGHY+ SR G R + D +RDQSYFLFATT++Q Sbjct: 151 KFRDLLATARELGAAALATGHYVASRRSPG----GSRTLLCAADADRDQSYFLFATTREQ 206 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 L LRFPLGDM K R+LAR GL +ADK DSQDICFV G Y D++ ++ L GD Sbjct: 207 LDFLRFPLGDMTKAQTRELARRFGLPVADKHDSQDICFVPTGHYTDIISQLKPNAMLSGD 266 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 IV L+G+++G H GI+N+T+GQRRGLG+A G PL+V+ LD + RV+VGPRE+L++HRI Sbjct: 267 IVDLDGRVIGHHEGIVNFTVGQRRGLGIASGAPLYVLSLDAANRRVVVGPREALKMHRIV 326 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 LR++NW+GDG + A+ G + FV++RS++ P P +++ D G V+ E GV+ GQA Sbjct: 327 LRDVNWIGDGALDLAIGAGLELFVRVRSTRKPQPAWLRVVDGGYEVELVAGEEGVSPGQA 386 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIG 401 CVFY +ARVLGGG I+ + A E + + Sbjct: 387 CVFYDGPEGQARVLGGGFIARAMAQRANEGAARNSTP 423 >gi|322375113|ref|ZP_08049627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sp. C300] gi|321280613|gb|EFX57652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sp. C300] Length = 415 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 140/393 (35%), Positives = 198/393 (50%), Gaps = 26/393 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L + N K RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A + Sbjct: 41 LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 96 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D D V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 97 DYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 156 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FP Sbjct: 157 YAMTLGADYVATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 212 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ Sbjct: 213 LGHLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGR 270 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 +G H G++ YTIGQR GLG+ P FVV D + + + VG +SL + Sbjct: 271 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSL 330 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 ++++ D E +C K R Q V V D V F + + + GQ Sbjct: 331 EASQVHFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQ 386 Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396 A VFY + LGGG+I + R V + + Sbjct: 387 AVVFYDGE----ECLGGGLIDNAYRDGQVCQYI 415 >gi|150397798|ref|YP_001328265.1| tRNA-specific 2-thiouridylase MnmA [Sinorhizobium medicae WSM419] gi|205828972|sp|A6UCQ0|MNMA_SINMW RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|150029313|gb|ABR61430.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sinorhizobium medicae WSM419] Length = 398 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 232/380 (61%), Positives = 286/380 (75%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLD D+ P+D RVVVAMSGGVDSSVVA LLKR+GYDV+G+TLQLY+ A R GSCC Sbjct: 1 MNSLDFDRKPEDTRVVVAMSGGVDSSVVAGLLKREGYDVLGITLQLYDHGAAVHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRVC+TI + HYV DYE RFR VI PFA SY AGETP+PCV CN+TVKF+D Sbjct: 61 AGQDIDDARRVCETIGIPHYVLDYEARFRETVINPFAESYIAGETPIPCVACNQTVKFAD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRSR +R + RP D +RDQSYFLFATTQ+Q+ L Sbjct: 121 LLATAKELGADALATGHYIRSRPSPMPRYPGQRALYRPADADRDQSYFLFATTQEQIDYL 180 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K R LA EMGL +A K+DSQDICFV QGKY D+V ++ AL G+IVHL Sbjct: 181 RFPLGGLPKSETRALAEEMGLVVAKKADSQDICFVPQGKYSDIVSKLKPNAALAGEIVHL 240 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG H GI++YTIGQRRG+GVA GEPL+VVYLD S RV+VGP+E+LE R+YLR++ Sbjct: 241 DGRVLGAHEGILHYTIGQRRGIGVATGEPLYVVYLDARSRRVVVGPKEALETRRVYLRDV 300 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD E A GF+CF K+RS++ P P + + +G+YV+ + E GVA GQAC Y Sbjct: 301 NWLGDEELEAAARSGFECFAKVRSTRRPAPAVLSCDAEGLYVELVEGEAGVAPGQACALY 360 Query: 369 TSDSNEARVLGGGIISGSKR 388 + +ARV GGG I S+R Sbjct: 361 SGIGEDARVYGGGFIRRSER 380 >gi|73662449|ref|YP_301230.1| putative tRNA methyltransferase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123642746|sp|Q49Y59|MNMA_STAS1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|72494964|dbj|BAE18285.1| putative tRNA methyltransferase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 370 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 133/377 (35%), Positives = 200/377 (53%), Gaps = 22/377 (5%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + KD RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D D Sbjct: 2 SNKDTRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWD---NTDENGYCTATEDYNDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L +L Sbjct: 59 IAVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R R + M R +D +DQ+YFL +Q QL + FP+GD++ Sbjct: 119 GADYVATGHYARVRRH----EDGHVEMLRGVDNNKDQTYFLNQLSQSQLSRVMFPIGDIE 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ VR +A E L A K DS ICF+ + + + + + A G++ L G+ +G H Sbjct: 175 KKEVRRIAEEQDLATAKKKDSTGICFIGERNFKEFLSQYLP--AQSGEMRTLKGEKIGTH 232 Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 G++ YTIGQR GLG+ G+P FVV + + + + V ++L + +I+++ Sbjct: 233 AGLMYYTIGQRHGLGIGGDGDPWFVVGKNLDDNILYVEQGFHHDALYSDYLIASDISFVN 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSD 371 D E +GF+C K R Q VFV+ N++ + V F + + GQ+ V Y D Sbjct: 293 DVDLE----NGFECTAKFRYRQKDTKVFVKNENENAIRVIFNEPVRAITPGQSVVLYDGD 348 Query: 372 SNEARVLGGGIISGSKR 388 LGG I + Sbjct: 349 V----CLGGATIDDVYK 361 >gi|116494783|ref|YP_806517.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, PP-loop ATPase [Lactobacillus casei ATCC 334] gi|301066347|ref|YP_003788370.1| putative tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Lactobacillus casei str. Zhang] gi|122263799|sp|Q039P7|MNMA_LACC3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|116104933|gb|ABJ70075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus casei ATCC 334] gi|300438754|gb|ADK18520.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, PP-loop ATPase [Lactobacillus casei str. Zhang] Length = 377 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 132/379 (34%), Positives = 188/379 (49%), Gaps = 25/379 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + ++RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A D D Sbjct: 7 DNSNIRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDV 63 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F Y AG TP P V CN+ +KF L QL Sbjct: 64 AKVASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYADQL 123 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY + + D M R D +DQ+YFL +Q QL FP+G ++ Sbjct: 124 NADYIAMGHYAQVKT----DENGIVHMLRGADGNKDQTYFLSQLSQDQLKKSLFPIGHLQ 179 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + A G ++ ++G +G H Sbjct: 180 KPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEMGTH 237 Query: 257 NGIINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 +G++ YTIGQR+GLG+ EP FVV D + + + VG +L + +N Sbjct: 238 DGLMYYTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLN 297 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W A +G K R Q V + +DDG VDF+ + GQA VFY Sbjct: 298 WTTG----QAPAEGTHMTAKFRYRQRDTGVTLHYHDDGTATVDFDVPVRAITPGQAVVFY 353 Query: 369 TSDSNEARVLGGGIISGSK 387 D LGGG I + Sbjct: 354 DGD----ECLGGGTIDAAY 368 >gi|257886541|ref|ZP_05666194.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium 1,141,733] gi|257822595|gb|EEV49527.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecium 1,141,733] Length = 373 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 140/388 (36%), Positives = 202/388 (52%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSQTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AKVAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R +D +DQ+YFL +Q+QL FPLG M+ Sbjct: 120 GADYVATGHYAQ----VTRDENGVVHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGME 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + A +G++V L+G++ G+H Sbjct: 176 KSEVRAIAERAGLVTAKKKDSTGICFIGEKNFKQFLSNYLP--AKKGNMVTLDGEVKGQH 233 Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 G++ YTIGQR+GLG+ EP FVV D ++ + VG +L + EI+ Sbjct: 234 AGLMYYTIGQRQGLGIGGGGDSQEPWFVVGKDLATNTLYVGQGFHHPALYATSLDASEIH 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368 + + + + FKC K R Q VPV V+ DD V F++ + GQA VFY Sbjct: 294 FTTN----EPMPKEFKCTAKFRYRQQDVPVTVRLLDDNRAEVVFDEPVRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGG+I + + V + + Sbjct: 350 DG----MECLGGGLIDHAYQETKVLQYV 373 >gi|314936263|ref|ZP_07843610.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus hominis subsp. hominis C80] gi|313654882|gb|EFS18627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus hominis subsp. hominis C80] Length = 370 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 134/378 (35%), Positives = 202/378 (53%), Gaps = 22/378 (5%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + KD+RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 2 SNKDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L +L Sbjct: 59 IAVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R + M R +D +DQ+YFL +Q+QL + FP+GD++ Sbjct: 119 GADYVATGHYARIHRH----EDGHVEMLRGVDNNKDQTYFLNQLSQEQLSKVMFPIGDIE 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ VR +A E L A K DS ICF+ + + + + A G++ LNG+ +G H Sbjct: 175 KKDVRKIAEEQDLATAKKKDSTGICFIGERNFKSFLSQYLP--AQSGEMRTLNGKKMGIH 232 Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +G++ YTIGQR GLG+ G+P FVV + + + V ++L + + +++ Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLEDNILYVEQGFHHDALYSDYLIASDASFVN 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371 E +GF+C K R Q VFVQ+ D+ + V F++ + GQA VFY + Sbjct: 293 PVDLE----NGFECTAKFRYRQKDTKVFVQKEDEQSIRVTFDEPVRAITPGQAVVFYNGE 348 Query: 372 SNEARVLGGGIISGSKRS 389 LGG I ++ Sbjct: 349 V----CLGGATIDDVYKT 362 >gi|258621706|ref|ZP_05716737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio mimicus VM573] gi|258626348|ref|ZP_05721195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio mimicus VM603] gi|262171838|ref|ZP_06039516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio mimicus MB-451] gi|258581400|gb|EEW06302.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio mimicus VM603] gi|258585937|gb|EEW10655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio mimicus VM573] gi|261892914|gb|EEY38900.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio mimicus MB-451] Length = 371 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 121/378 (32%), Positives = 192/378 (50%), Gaps = 26/378 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA Sbjct: 7 ANSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 63 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 64 QAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY+R + M R +D +DQSYFL+ + +Q+ FP+GD+ Sbjct: 124 LDADYIAMGHYVRRTF---PQNGEKPQMLRGLDNNKDQSYFLYTLSHEQVARSLFPVGDL 180 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL A K DS ICF+ + K+ D + R A G I G+++G Sbjct: 181 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGE 238 Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307 H G++ +T+GQR+GL + +P +V D + +I L+ H + + Sbjct: 239 HQGLMYHTLGQRKGLHIGGMKESNEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQ 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACV 366 ++W+ + + +C VK R Q + + +DD + V F++ +V V GQ+ V Sbjct: 299 LHWVD----RTPITEPLRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAV 354 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 355 FYQGEI----CLGGGIIE 368 >gi|224476719|ref|YP_002634325.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus carnosus subsp. carnosus TM300] gi|254811461|sp|B9DNH6|MNMA_STACT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|222421326|emb|CAL28140.1| putative (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus carnosus subsp. carnosus TM300] Length = 370 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 136/377 (36%), Positives = 196/377 (51%), Gaps = 22/377 (5%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +D RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 2 SNQDTRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L +L Sbjct: 59 IAVCNQIGIPYYAVNFEQEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMKL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + R D M R +D +DQ+YFL T +QL + FPLG M+ Sbjct: 119 GADYVATGHYAQVRR----DADGNVEMLRGVDNNKDQTYFLNQLTHEQLSKVMFPLGGME 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A E L A K DS ICF+ + + + + A GD+ LNG+ +G H Sbjct: 175 KSEVRRIAAEQDLATAKKKDSTGICFIGERNFKEFLSNYLP--AQSGDMRTLNGKKMGTH 232 Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +G++ YTIGQR GLG+ G+P FVV + + + V ++L + +++ + Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLEDNVLYVEQGFHHDALYSDYLIASDVSLVN 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 D + DG +C K R Q V V R D+ + VDF++ + GQA V Y D Sbjct: 293 DID----LTDGLECTAKFRYRQKDTKVTVTRIDENQIRVDFDQPVRAITPGQAVVLYDGD 348 Query: 372 SNEARVLGGGIISGSKR 388 LGG I + Sbjct: 349 V----CLGGATIDDVYK 361 >gi|49475921|ref|YP_033962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella henselae str. Houston-1] gi|81647713|sp|Q6G2J9|MNMA_BARHE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|49238729|emb|CAF27985.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella henselae str. Houston-1] Length = 409 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 224/392 (57%), Positives = 292/392 (74%), Gaps = 5/392 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL P++ R+VVAMSGGVDSSVVA LLK++GYDVIG+TLQLY+ A+ R G+CC Sbjct: 3 LNSLDLPGQPENSRIVVAMSGGVDSSVVAGLLKKEGYDVIGITLQLYDHGAATHRVGACC 62 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DAR V +T+ + HYV DYEERFR AVI PFA+SYA GETP+PC+ CN+TVKF+D Sbjct: 63 AGQDIEDARCVAETLGIPHYVLDYEERFREAVIDPFAASYAHGETPVPCIACNQTVKFAD 122 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R+L AD LATGHYIRSR + R + RP+D +RDQSYFLFATTQ+Q+ L Sbjct: 123 LLATARELDADALATGHYIRSRSH-----GAHRALFRPLDSDRDQSYFLFATTQEQIDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGD+ K VR++A EMG +A+K DSQDICFV QGKY D++ ++ G IVH+ Sbjct: 178 RFPLGDLPKARVREMATEMGFVVANKHDSQDICFVPQGKYSDIITKLRPEAVNPGVIVHV 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +GQ+LG+H+GI++YT+GQRRG+GVA GE L+VVYLD ++RVIVGPRE LE H+++LR++ Sbjct: 238 DGQVLGKHSGIVHYTVGQRRGIGVATGEALYVVYLDVENARVIVGPREMLETHKLFLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD ++ DG + VK+RS++ P + + VDF + E VA GQACVFY Sbjct: 298 NWLGDERLDNFPPDGIEMAVKVRSTRPPHLARLHYQEGVFSVDFLECENSVAPGQACVFY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 +S+ ARVLGGG ++ S+R+ E L V+ Sbjct: 358 DGNSDGARVLGGGFVTHSERAAETEMMLKRVL 389 >gi|239631620|ref|ZP_04674651.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239526085|gb|EEQ65086.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 376 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 132/379 (34%), Positives = 188/379 (49%), Gaps = 25/379 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + ++RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A D D Sbjct: 6 DNSNIRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDV 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F Y AG TP P V CN+ +KF L QL Sbjct: 63 AKVASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYADQL 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY + + D M R D +DQ+YFL +Q QL FP+G ++ Sbjct: 123 NADYIAMGHYAQVKT----DENGIVHMLRGADGNKDQTYFLSQLSQDQLKKSLFPIGHLQ 178 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + A G ++ ++G +G H Sbjct: 179 KPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEMGTH 236 Query: 257 NGIINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 +G++ YTIGQR+GLG+ EP FVV D + + + VG +L + +N Sbjct: 237 DGLMYYTIGQRQGLGIGGNSDNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLN 296 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W A +G K R Q V + +DDG VDF+ + GQA VFY Sbjct: 297 WTTG----QAPAEGTHMTAKFRYRQRDTGVTLHYHDDGTATVDFDVPVRAITPGQAVVFY 352 Query: 369 TSDSNEARVLGGGIISGSK 387 D LGGG I + Sbjct: 353 DGD----ECLGGGTIDAAY 367 >gi|148253403|ref|YP_001237988.1| tRNA-specific 2-thiouridylase MnmA [Bradyrhizobium sp. BTAi1] gi|205811320|sp|A5ED38|MNMA_BRASB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|146405576|gb|ABQ34082.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bradyrhizobium sp. BTAi1] Length = 397 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 219/390 (56%), Positives = 280/390 (71%), Gaps = 4/390 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL+ P+D RVVVAMSGGVDSSV AALLK +GYDV+G+TLQLY+ A+ RKG+CC Sbjct: 2 LNSLDLEGRPEDTRVVVAMSGGVDSSVTAALLKSEGYDVVGITLQLYDHGAATHRKGACC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V + + + HYV DYE+RFR +VI FA+SYA+GETP+PC++CNR +KF D Sbjct: 62 AGQDIHDARNVAERLGIPHYVLDYEDRFRESVIDNFAASYASGETPVPCIECNRAIKFGD 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL R+LGA VLATGHY+ SR R + D +RDQSYFLFATT++QL L Sbjct: 122 LLKTARELGASVLATGHYVASRRLAD----GSRALVCAADADRDQSYFLFATTREQLDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K VR+LAR GL++ADK DSQDICFV G+Y D++ ++ G+IV L Sbjct: 178 RFPLGDMTKPEVRELARRFGLEVADKHDSQDICFVPTGRYTDIIGKLRPNAMEPGEIVDL 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 NG++LG H GI NYTIGQR+GLG+A G PL+VV LD + RV+VGPRE+L HRI LRE+ Sbjct: 238 NGRVLGAHQGIANYTIGQRKGLGIAAGAPLYVVKLDVATRRVVVGPREALRTHRITLREV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GDG+ + AV DG + FV++RS++ P P +++ D V+ E GV+ GQACVFY Sbjct: 298 NWIGDGVLDAAVRDGLELFVRVRSTRPPQPAWLRGADGQYEVELVAGEEGVSPGQACVFY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLS 398 + S ARVLGGG I + L+ Sbjct: 358 DAASGRARVLGGGFIQSAVAESRTTAGLVR 387 >gi|228475220|ref|ZP_04059946.1| tRNA-methyltransferase [Staphylococcus hominis SK119] gi|228270831|gb|EEK12233.1| tRNA-methyltransferase [Staphylococcus hominis SK119] Length = 370 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 134/378 (35%), Positives = 202/378 (53%), Gaps = 22/378 (5%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + KD+RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 2 SNKDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L +L Sbjct: 59 IAVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R + M R +D +DQ+YFL +Q+QL + FP+GD++ Sbjct: 119 GADYVATGHYARIHRHEDS----HVEMLRGIDNNKDQTYFLNQLSQKQLSKVMFPIGDLE 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ VR +A E L A K DS ICF+ + + + + A G++ LNG+ +G H Sbjct: 175 KKEVRKIAEEQDLATAKKKDSTGICFIGERNFKSFLSQYLP--AQSGEMRTLNGKKMGIH 232 Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +G++ YTIGQR GLG+ G+P FVV + + + V ++L + + +++ Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLEDNILYVEQGFHHDALYSDYLIASDASFVN 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371 E +GF+C K R Q VFVQ+ D+ + V F++ + GQA VFY + Sbjct: 293 PVDLE----NGFECTAKFRYRQKDTKVFVQKEDEQSIRVTFDEPVRAITPGQAVVFYNGE 348 Query: 372 SNEARVLGGGIISGSKRS 389 LGG I ++ Sbjct: 349 V----CLGGATIDDVYKT 362 >gi|15672819|ref|NP_266993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactococcus lactis subsp. lactis Il1403] gi|12723762|gb|AAK04935.1|AE006317_4 tRNA-methyltransferase [Lactococcus lactis subsp. lactis Il1403] gi|326406382|gb|ADZ63453.1| 5-methylaminomethyl-2-thiouridylate-tRNA methyltransferase [Lactococcus lactis subsp. lactis CV56] Length = 384 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 138/390 (35%), Positives = 196/390 (50%), Gaps = 26/390 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+P RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 12 KSPAQTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 68 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 V D I V +Y ++E+ + + V F + Y AG TP P V CN+ +KF L + Sbjct: 69 VAAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAME 128 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY + R D M R D +DQ+YFL TQ+QL FPLG + Sbjct: 129 LGADYVATGHYAQVRT----DENGIVHMLRGADNNKDQTYFLSQLTQEQLKKTMFPLGHL 184 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + GL A K DS ICF+ + + + A G ++ L+G +G Sbjct: 185 EKPEVRKIAEKAGLATAKKKDSTGICFIGEKNFKKFLGEYLP--AQPGKMMTLDGIEMGN 242 Query: 256 HNGIINYTIGQRRGLGVA------MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLR 306 H G++ YTIGQR GLG+ +P FVV D ++ + VG E L + Sbjct: 243 HAGLMYYTIGQRGGLGIGGQHGQLTSDPWFVVGKDLTTNTLYVGQGFHHEHLYSTSLDAS 302 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 ++++ + C K R Q+ V + N D V VDF++ + GQA V Sbjct: 303 DLSFTREM----PETFDLHCTAKFRYRQEDTGVTIHVNGDKVTVDFDEPVRAITPGQAVV 358 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396 FY + LGG +I + ++ V + Sbjct: 359 FYDGE----ECLGGAMIDVAYKAQKVMQYQ 384 >gi|205374227|ref|ZP_03227026.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus coahuilensis m4-4] Length = 371 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 142/376 (37%), Positives = 198/376 (52%), Gaps = 23/376 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K PKD RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MNKAPKDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVIRVANQIGIPYYAVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLDHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +LGAD LATGHY + G+ M R D +DQ+YFL +Q L + FP+G Sbjct: 118 MKLGADYLATGHYAQVEERDGE-----IKMLRGKDENKDQTYFLNQLSQDVLKKVLFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 + K VR++A+E GL A K DS ICF+ + + + + + A G + L+G++ Sbjct: 173 SLDKSRVREIAKEAGLATATKKDSTGICFIGERNFKEFLGQYLP--AQPGTMETLSGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H G++ +TIGQR GLG+ GEP F V D + + V +SL I +I+ Sbjct: 231 GQHEGLMYHTIGQRHGLGIGGAGEPWFAVGKDLERNVLFVEQGFDHDSLYSTSILATDIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368 W D E F C K R Q V V+ D + V V F++ V GQA VFY Sbjct: 291 WTSDFPKE----QEFHCTAKFRYRQSDNSVTVKLLDNNKVEVIFDEPIRAVTPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIIS 384 D LGGG I Sbjct: 347 DGDV----CLGGGTID 358 >gi|194429520|ref|ZP_03062041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli B171] gi|194412394|gb|EDX28695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli B171] gi|323163677|gb|EFZ49499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli E128010] Length = 368 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 122/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VC Sbjct: 6 KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTATADLADAQAVC 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L LGAD Sbjct: 63 DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G+ Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +T+GQR+GLG+ EP +VV D ++ ++V L + ++++W+ Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWV 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370 + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNG 351 Query: 371 DSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 EV----CLGGGIIE 361 >gi|307944132|ref|ZP_07659473.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseibium sp. TrichSKD4] gi|307772478|gb|EFO31698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseibium sp. TrichSKD4] Length = 390 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 218/382 (57%), Positives = 275/382 (71%), Gaps = 7/382 (1%) Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69 NSLDL P+D RVVVAMSGGVDSSVVAAL+K +GYDVIGVTLQLY+ A R SCCA Sbjct: 3 NSLDLPGRPEDTRVVVAMSGGVDSSVVAALMKEEGYDVIGVTLQLYDHGAAVSRAKSCCA 62 Query: 70 GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 G D++DARR + I + HYV DYE RF+ V+ FA SY AGETP+PCV CN+TVKF+DL Sbjct: 63 GVDIHDARRAAEKIGIPHYVLDYESRFKEQVMDRFADSYIAGETPIPCVSCNQTVKFTDL 122 Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 L + LGADVLATGHY+RSR DG +R + RP+DL+RDQSYFLFATTQ+QL +R Sbjct: 123 LKTAKDLGADVLATGHYVRSRP----DGNKRA-LFRPVDLDRDQSYFLFATTQEQLDFIR 177 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 FPLG K VR LA + GL +A+K DSQDICFV G Y +V++++ A GDIVH++ Sbjct: 178 FPLGGRPKSEVRQLAEKFGLSVANKPDSQDICFVPNGDYTEVIRKLRPNAAEPGDIVHMD 237 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 G++LG+H G+I+YT+GQRRGLGVA GEPL+VV LD + RV+VGPRE+L + I LRE+N Sbjct: 238 GRVLGQHEGVIHYTVGQRRGLGVATGEPLYVVRLDADEKRVVVGPREALTTNTIILREVN 297 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 WLGD ++ F K+RS++ P P ++ + V+ E GVA GQACVF+ Sbjct: 298 WLGDMPLDEGA--ELDLFAKVRSTRPPAPAILRHTAEKTTVELVTGEAGVAPGQACVFFD 355 Query: 370 SDSNEARVLGGGIISGSKRSDA 391 S+ ARVLGGG I+ ++RS A Sbjct: 356 SEDETARVLGGGWIARTERSGA 377 >gi|256822321|ref|YP_003146284.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Kangiella koreensis DSM 16069] gi|256795860|gb|ACV26516.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Kangiella koreensis DSM 16069] Length = 367 Score = 504 bits (1299), Expect = e-140, Method: Composition-based stats. Identities = 133/383 (34%), Positives = 207/383 (54%), Gaps = 27/383 (7%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 DK P++ V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ Sbjct: 3 DKAPENTHVIVGMSGGVDSSVSAYLLKKQGYQVEGLFMKNWEEDDTDE---YCSAAEDLA 59 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ VCD + + ++ + + V F Y AG TP P + CN+ +KF L + Sbjct: 60 DAQAVCDKLGIKLRTVNFAAEYWDRVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLDYAQ 119 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD +ATGHY+R + + + R +DL +DQSYFL+ + +++ FP+G Sbjct: 120 LLGADYIATGHYVRRG-----EADGKATLLRGLDLNKDQSYFLYGVSHEKIAKTLFPVGC 174 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K VR +A E GL A K DS ICF+ + K+ D +++ A G+I G+++G Sbjct: 175 IEKPEVRKIAEEQGLVTAKKKDSTGICFIGERKFTDFLQQYLP--AQPGNIETPEGEVIG 232 Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 +HNG++ +T+GQR+GLG+ EP F + D + +IVG L H + Sbjct: 233 KHNGLMYHTLGQRKGLGIGGRQDSSEEPWFTLNKDLKRNVLIVGQGHEHPLLMSHGLIAD 292 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQAC 365 +++W+ + D F+C K R QD VP V+R +D + V+F+ + V GQ+ Sbjct: 293 KLDWIA----TEPPSDEFRCTAKTRYRQDDVPCQVKRLNDTQWLVEFDDKQRAVTPGQSV 348 Query: 366 VFYTSDSNEARVLGGGIISGSKR 388 VFY + LGGGII +R Sbjct: 349 VFYQGEV----CLGGGIIKEIRR 367 >gi|327439665|dbj|BAK16030.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Solibacillus silvestris StLB046] Length = 372 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 135/380 (35%), Positives = 202/380 (53%), Gaps = 24/380 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 ++P +RVV+ MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D Sbjct: 4 TRDPSQIRVVIGMSGGVDSSVAAYLLKQQGYDVIGIFMKNWDD---TDEFGVCTATEDYD 60 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 61 DVIAVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHAL 120 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD LATGHY R + M R +D +DQ+YFL T +QL + FP+G Sbjct: 121 ALGADYLATGHYARVAHD-----ENGVKMLRGIDNNKDQTYFLNQLTSEQLEKVMFPIGH 175 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 + K VR +A E GL A K DS ICF+ + + + + + A G++ +G++ G Sbjct: 176 LPKPEVRKIAEEAGLATAKKKDSTGICFIGERNFKEFLSQYLP--AQPGNMETFDGEVKG 233 Query: 255 RHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINW 310 H+G++ YT+GQR GLG+ GEP FVV D + + VG ++L + ++++ Sbjct: 234 THDGLMYYTLGQRHGLGIGGDGEPWFVVGKDLTRNVLYVGQGFHHDALYSDALTAVKMSF 293 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 G +A F C K R Q+ PV V +DG Y++F + + GQA V Y Sbjct: 294 TG-----EAKTGTFNCTAKFRYRQEDSPVTVTMREDGTAYIEFAEPVRAITPGQAVVLYD 348 Query: 370 SDSNEARVLGGGIISGSKRS 389 + LGGG I G ++ Sbjct: 349 GE----ECLGGGTIDGVFKN 364 >gi|269139398|ref|YP_003296099.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Edwardsiella tarda EIB202] gi|267985059|gb|ACY84888.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Edwardsiella tarda EIB202] gi|304559294|gb|ADM41958.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Edwardsiella tarda FL6-60] Length = 367 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 124/379 (32%), Positives = 199/379 (52%), Gaps = 28/379 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDSDE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDRLGIELHTVNFAAEYWDNVFELFLQEYRAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R R D + R +D +DQSYFL+ + QQ+ FP+G++ Sbjct: 120 LGADYIATGHYVRRR-----DINGTTQLLRGVDANKDQSYFLYTLSHQQVAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++ L A K DS ICF+ + K+ + + R A G IV ++G+ +G Sbjct: 175 EKPEVRRIAAQLDLATAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIVTVDGETIGE 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ EP +VV D +++ ++V L + + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGSEEPWYVVDKDLDNNVLVVAQGHDHPRLFSNGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366 ++W+ + +C VK R Q +P V +DD + V F++ V GQ+ V Sbjct: 293 LHWVD----RRPLGAPLRCTVKTRYRQADIPCLVTPLSDDRIAVRFDQPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIISG 385 FY + LGGGII Sbjct: 349 FYQDEV----CLGGGIIET 363 >gi|319898474|ref|YP_004158567.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella clarridgeiae 73] gi|319402438|emb|CBI75979.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella clarridgeiae 73] Length = 409 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 228/392 (58%), Positives = 296/392 (75%), Gaps = 5/392 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL +P++ R+VVAMSGGVDSSVVA LLK++GYDV+G+TLQLY+ A+ R G+CC Sbjct: 3 LNSLDLPGHPENSRIVVAMSGGVDSSVVAGLLKKEGYDVVGITLQLYDHGAATHRVGACC 62 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV +T+ V HY+ DYEERFR AVI PFA SYA GETP+PCV CN+TVKF+D Sbjct: 63 AGQDIEDARRVAETLGVPHYILDYEERFREAVINPFAESYAHGETPVPCVSCNQTVKFAD 122 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ +LGAD LATGHYIRSR++ R + RP+D +RDQSYFLFATTQ+Q+ L Sbjct: 123 LLATAYELGADALATGHYIRSRVH-----GAHRALFRPLDADRDQSYFLFATTQEQIDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGD+ K+ VR++A EMGL +A+K DSQDICFV QG+Y DV+ ++ +A G IVH+ Sbjct: 178 RFPLGDLSKDRVREIATEMGLVVANKHDSQDICFVPQGRYSDVITKLRPEVANPGVIVHI 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +GQILG H+GI+NYT+GQRRG+GVA GE L+V+YLD ++RVIVGPRE LE R++LR++ Sbjct: 238 DGQILGEHSGIVNYTVGQRRGIGVATGEALYVIYLDVENARVIVGPREMLETRRLFLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD ++ +DG VK+RS++ P P + VD +SE G+A GQACV Y Sbjct: 298 NWLGDERLDNFPLDGIDVAVKVRSTRPPRPARLHYKQGLFSVDLLESESGIAPGQACVLY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 +S EAR+LGGG I+ S+ + E+ L V+ Sbjct: 358 NENSYEARILGGGFITRSEHAADTEKMLKQVL 389 >gi|270261459|ref|ZP_06189732.1| tRNA-specific 2-thiouridylase mnmA [Serratia odorifera 4Rx13] gi|270044943|gb|EFA18034.1| tRNA-specific 2-thiouridylase mnmA [Serratia odorifera 4Rx13] Length = 367 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 123/378 (32%), Positives = 197/378 (52%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVTAYLLQQQGYQVAGLFMKNWEEDDDEE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + D + + R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 120 LGADFIATGHYVRRQ-----DVDGKSRLLRGVDGNKDQSYFLYTLSHEQVAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++ L A K DS ICF+ + K+ D + R A G IV+++GQ +G Sbjct: 175 EKPEVRRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVNVDGQTVGE 232 Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ +P +VV D ++ ++V L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGMKDSSEDPWYVVDKDVANNVLVVAQGHDHPRLMSTGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366 ++W+ + +C VK R Q +P V DD + V F++ V GQ+ V Sbjct: 293 LHWVD----RLPLSGPLRCTVKTRYRQQDIPCTVTPLDDQRIEVRFDEPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 349 FYQDEI----CLGGGIIE 362 >gi|149376379|ref|ZP_01894142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Marinobacter algicola DG893] gi|149359393|gb|EDM47854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Marinobacter algicola DG893] Length = 386 Score = 504 bits (1298), Expect = e-140, Method: Composition-based stats. Identities = 132/390 (33%), Positives = 201/390 (51%), Gaps = 23/390 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K P++ RV+V MSGGVDSSV A LLK GY V G+ ++ ++ ++ C A D+ Sbjct: 1 MTKAPENTRVIVGMSGGVDSSVAAWLLKDQGYQVEGLFMKNWDEDDGTE---YCTAMTDL 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DAR V +TI ++ + + + + V F S Y AG TP P + CN+ VKF L Sbjct: 58 ADARAVAETIGITLHTASFAAEYWDRVFEHFLSEYKAGRTPNPDILCNKEVKFRAFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R R DDG + + +D +DQSYFL A + +++ FP+G Sbjct: 118 ITLGADYIATGHYTRQRPL--DDGSGGAELLKGLDPNKDQSYFLHAVSGERIARTLFPVG 175 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR +A E G DK DS ICF+ + K+ D +K+ A G+I +GQ++ Sbjct: 176 ELEKPEVRRIAAEQGFITHDKKDSTGICFIGERKFRDFLKQYIP--AQPGNIETPDGQVI 233 Query: 254 GRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYL 305 GRH G++ +TIGQR+GLG+ EP +V D + + ++ L + Sbjct: 234 GRHQGLMYHTIGQRQGLGIGGLSEFGDEPWYVAEKDLSRNVLVAVQGKHHPLLFSRGLIS 293 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 ++W+ +A F+C K R Q V +G V F+ ++ V GQ+ Sbjct: 294 GPVDWIAG----EAPAAEFRCKAKTRYRQPDQDCTVTVLGNGFRVVFDDAQRAVTPGQSV 349 Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEES 395 VFY + LGGG+I + R + Sbjct: 350 VFYRDEV----CLGGGVIEQTWRDGEQAPT 375 >gi|261405437|ref|YP_003241678.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paenibacillus sp. Y412MC10] gi|261281900|gb|ACX63871.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paenibacillus sp. Y412MC10] Length = 375 Score = 503 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 141/384 (36%), Positives = 208/384 (54%), Gaps = 23/384 (5%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 + + K + R+VV MSGGVDSSV A LLK+ GY+VIG+ ++ ++ + G C A Sbjct: 5 ITMSKEKHNTRIVVGMSGGVDSSVTALLLKQQGYEVIGIFMKNWDD---TDELGYCTAEA 61 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D D RRVC+ +++ +Y ++E+ + + V F Y AG TP P V CNR +KF + L+ Sbjct: 62 DAEDVRRVCEQLDIPYYTVNFEKEYFDKVFSYFLDEYKAGRTPNPDVMCNREIKFGEFLN 121 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R + +DG+ R + R +D +DQ+YFL A +Q+QL FP Sbjct: 122 KAMDLGADYVATGHYAR---VIEEDGQYR--LLRGVDSNKDQTYFLNALSQEQLAKAMFP 176 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250 +G + K VR LA E GL A K DS +CF+ + + + + + A GD+V + G Sbjct: 177 IGHLPKPEVRRLAEEAGLYTAKKKDSTGVCFIGERNFKEFLGQYLP--AQSGDMVDIVTG 234 Query: 251 QILGRHNGIINYTIGQRR---GLGVAMGEPLFVVYLDKNSS--RVIVGPRESLEVHRIYL 305 ++ GRH+G++ YT+GQR+ G GEP FV D ++ V+ G SL + Sbjct: 235 EVKGRHDGLMYYTLGQRQGLGIGGSGSGEPWFVADKDLTNNILYVVQGDHPSLYSTGLVA 294 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364 INW+ + D + C K R Q V + +DG V+V F K + + GQA Sbjct: 295 SGINWIAGQ--DAMPKDAYTCTAKFRYRQPDQEVTITPREDGTVHVAFAKPQKAITPGQA 352 Query: 365 CVFYTSDSNEARVLGGGIISGSKR 388 VFY D LGGG I + + Sbjct: 353 VVFYQGD----ECLGGGTIETADK 372 >gi|120554680|ref|YP_959031.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Marinobacter aquaeolei VT8] gi|205816919|sp|A1U1H5|MNMA_MARAV RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|120324529|gb|ABM18844.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Marinobacter aquaeolei VT8] Length = 392 Score = 503 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 131/397 (32%), Positives = 201/397 (50%), Gaps = 23/397 (5%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 ++P RV+V MSGGVDSSV A LLK GY V G+ ++ ++ ++ C A D+ Sbjct: 7 PQSPAHTRVIVGMSGGVDSSVAAWLLKDQGYQVEGLFMKNWDEDDGTE---YCTAMTDLA 63 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ V D I + + + + + V F S Y+AG TP P + CN+ VKF L Sbjct: 64 DAQAVADAIGIKLHTASFAAEYWDRVFEHFLSEYSAGRTPNPDILCNKEVKFRAFLDYAV 123 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD +ATGHY R R +DG + + + +D +DQSYFL A + +++ FP+G+ Sbjct: 124 TLGADYIATGHYTRQRPL--NDGSGKAQLLKGLDPNKDQSYFLHAVSGERIARTLFPVGE 181 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K VR +A E G DK DS ICF+ + K+ D +K+ A G+I +G ++G Sbjct: 182 LEKPEVRRIAEEQGFVTHDKKDSTGICFIGERKFTDFLKQYLP--AQPGNIETPDGTVIG 239 Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRV--IVG-PRESLEVHRIYLR 306 +H G++ +TIGQR+GLG+ EP +V D + + + G L + Sbjct: 240 KHQGLMYHTIGQRQGLGIGGLAEFGDEPWYVAEKDLKRNVLIAVQGKHHPLLFSRGLVSG 299 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 ++W+ + F+C K R Q V D GV V F+ ++ V GQ+ V Sbjct: 300 PVDWVAG----EPPAQKFRCKAKTRYRQPDQDCEVTVIDGGVKVVFDDAQRAVTPGQSVV 355 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403 FY + LGGG+I + R + + L E Sbjct: 356 FYQGEV----CLGGGVIEQTWRDNEALPARLEHQASE 388 >gi|270291444|ref|ZP_06197666.1| tRNA methyl transferase [Pediococcus acidilactici 7_4] gi|304385157|ref|ZP_07367503.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pediococcus acidilactici DSM 20284] gi|270280290|gb|EFA26126.1| tRNA methyl transferase [Pediococcus acidilactici 7_4] gi|304329351|gb|EFL96571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pediococcus acidilactici DSM 20284] Length = 377 Score = 503 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 136/380 (35%), Positives = 197/380 (51%), Gaps = 24/380 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSVVA LLK+ GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVVAYLLKKQGYDVVGVFMKNWDD---TDENGYCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F Y G TP P V CN +KF L L Sbjct: 60 AKVAAKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPNPDVICNNEIKFKAFLDYAISL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D + + R D +DQ+YFL + +QL + FPLG M Sbjct: 120 GADYVATGHYAQ----VERDENGHQHLLRATDSNKDQTYFLSQLSAEQLDRVMFPLGGMV 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A+E GL + DK DS ICF+ + + + + A G ++ L+G++ G H Sbjct: 176 KPEVRAIAKEAGLAVYDKKDSVGICFIGEKNFREFLSNYLP--AKPGKMMTLDGEVKGEH 233 Query: 257 NGIINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G++ YTIGQRRGLG+ G EP FVV D + + + VG L + +++ Sbjct: 234 AGLMYYTIGQRRGLGIGGGSKNNEPWFVVGKDLSKNILYVGQGFDNPHLYAASLDASDMH 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVF 367 ++ + F+C K R VPV V +DD V VDF++ + GQA V Sbjct: 294 FVN--RLGEERGHDFRCTAKFRYRAKDVPVTVHFSDDFSKVTVDFDEPARAITPGQALVL 351 Query: 368 YTSDSNEARVLGGGIISGSK 387 Y + +GGGII + Sbjct: 352 YDGE----ECIGGGIIDAAY 367 >gi|330446458|ref|ZP_08310110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490649|dbj|GAA04607.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 371 Score = 503 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 120/381 (31%), Positives = 196/381 (51%), Gaps = 28/381 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A +D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDNDE---YCSAAEDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 60 QAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY R + + M R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 120 LEADYIAMGHYTRRSFPTAE--GEKPQMLRGVDNNKDQSYFLYTLSHEQIARSLFPVGEL 177 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILG 254 +K VR +A E GL A K DS ICF+ + K+ + + + A G IV + G+ +G Sbjct: 178 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGKIVTADEGKEIG 235 Query: 255 RHNGIINYTIGQRRGL-------GVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304 H G++ +T+GQR+GL G + +VV D ++ +IVG L+ + + Sbjct: 236 EHQGLMYHTLGQRKGLHIGGQKGGNGHEDAWYVVDKDVENNLLIVGQGKDHPRLKSNGLI 295 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363 ++++W+ + + C VK R Q +P + DD + V F++ ++ V GQ Sbjct: 296 AKQLHWVD----RQPIRETMACTVKTRYRQQDIPCTIIPVDDETIKVIFDEPQIAVTPGQ 351 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY + LGGGII Sbjct: 352 SAVFYNGEI----CLGGGIIE 368 >gi|254829729|ref|ZP_05234384.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes 10403S] Length = 371 Score = 503 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 134/388 (34%), Positives = 201/388 (51%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + N D+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I++ +Y ++E+ + + V F Y G TP P V CN+ +KF L Sbjct: 58 DDVIRVANQIDIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + + + R +D +DQ+YFL +Q QL + FPLG Sbjct: 118 ESLGADYVATGHYAQVKKVGDE-----IELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K VR++A++ GL ADK DS ICF+ + + + A G++ L+G++L Sbjct: 173 AMEKTEVREIAKKAGLATADKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLDGEVL 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP FVV + + + V E+L + +I+ Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKNLKENVLFVEQGFHHETLYSDSLIATDIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 + + + +C K R Q V V +DG V F + GQA VFY Sbjct: 291 FTTNAEKPKTI----ECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGGG I ++ + + Sbjct: 347 DGDV----CLGGGTIDTVWKNGQKLDYV 370 >gi|238920209|ref|YP_002933724.1| tRNA-specific 2-thiouridylase MnmA [Edwardsiella ictaluri 93-146] gi|259495829|sp|C5B8B9|MNMA_EDWI9 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|238869778|gb|ACR69489.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Edwardsiella ictaluri 93-146] Length = 367 Score = 503 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 123/379 (32%), Positives = 198/379 (52%), Gaps = 28/379 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDSDE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDRLGIELHTVNFAAEYWDNVFELFLQEYRAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R R D + R +D +DQSYFL+ + QQ+ FP+G++ Sbjct: 120 LGADYIATGHYVRRR-----DINGTTQLLRGVDANKDQSYFLYTLSHQQVAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++ L A K DS ICF+ + K+ + + R A G IV ++G+ +G Sbjct: 175 EKPEVRRIAAQLDLATAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIVTVDGETIGE 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ EP +VV D +++ ++V L + + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGSEEPWYVVDKDLDNNVLVVAQGHDHPRLFSNGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACV 366 ++W+ + +C VK R Q +P V D+ + V F++ V GQ+ V Sbjct: 293 LHWVD----RLPLGAPLRCTVKTRYRQADIPCLVTPLADERIEVRFDQPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIISG 385 FY + LGGGII Sbjct: 349 FYQDEV----CLGGGIIET 363 >gi|15641141|ref|NP_230773.1| tRNA-specific 2-thiouridylase MnmA [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587442|ref|ZP_01677211.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae 2740-80] gi|121726243|ref|ZP_01679533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae V52] gi|147673628|ref|YP_001216596.1| tRNA-specific 2-thiouridylase MnmA [Vibrio cholerae O395] gi|153816924|ref|ZP_01969591.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae NCTC 8457] gi|153822021|ref|ZP_01974688.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae B33] gi|227081301|ref|YP_002809852.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae M66-2] gi|14195282|sp|Q9KSX8|MNMA_VIBCH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205828983|sp|A5F2F2|MNMA_VIBC3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|9655600|gb|AAF94287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548362|gb|EAX58426.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae 2740-80] gi|121631189|gb|EAX63562.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae V52] gi|126512511|gb|EAZ75105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae NCTC 8457] gi|126520486|gb|EAZ77709.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae B33] gi|146315511|gb|ABQ20050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae O395] gi|227009189|gb|ACP05401.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae M66-2] gi|227012943|gb|ACP09153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae O395] Length = 372 Score = 503 bits (1297), Expect = e-140, Method: Composition-based stats. Identities = 120/378 (31%), Positives = 192/378 (50%), Gaps = 26/378 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA Sbjct: 8 ANSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 64 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 65 QAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 124 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY+R + M R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 125 LDADYIAMGHYVRRTF---PQNGEKPQMLRGLDGNKDQSYFLYTLSHEQVARTLFPVGEL 181 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL A K DS ICF+ + K+ D + R A G I G+++G Sbjct: 182 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGE 239 Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307 H G++ +T+GQR+GL + +P +V D + +I L+ H + + Sbjct: 240 HQGLMYHTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQ 299 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACV 366 ++W+ + + +C VK R Q + + +DD + V F++ +V V GQ+ V Sbjct: 300 LHWVD----RTPITEPVRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAV 355 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 356 FYQGEI----CLGGGIIE 369 >gi|322378091|ref|ZP_08052577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sp. M334] gi|321280928|gb|EFX57942.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sp. M334] Length = 391 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 140/393 (35%), Positives = 198/393 (50%), Gaps = 26/393 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L + N K RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A + Sbjct: 17 LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 72 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D D V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 73 DYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 132 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FP Sbjct: 133 YAMTLGADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 188 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ Sbjct: 189 LGHLEKPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGR 246 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 +G H G++ YTIGQR GLG+ P FVV D + + + VG +SL + Sbjct: 247 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSL 306 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 ++++ D E +C K R Q V V D V F + + + GQ Sbjct: 307 EASQVHFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQ 362 Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396 A VFY + LGGG+I + R V + + Sbjct: 363 AVVFYDGE----ECLGGGLIDNAYRDGQVCQYI 391 >gi|229505277|ref|ZP_04394787.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae BX 330286] gi|229511053|ref|ZP_04400532.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae B33] gi|229518173|ref|ZP_04407617.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae RC9] gi|229608296|ref|YP_002878944.1| tRNA-specific 2-thiouridylase MnmA [Vibrio cholerae MJ-1236] gi|254848257|ref|ZP_05237607.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae MO10] gi|255745540|ref|ZP_05419488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholera CIRS 101] gi|262158386|ref|ZP_06029502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae INDRE 91/1] gi|262170249|ref|ZP_06037936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae RC27] gi|229344888|gb|EEO09862.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae RC9] gi|229351018|gb|EEO15959.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae B33] gi|229357500|gb|EEO22417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae BX 330286] gi|229370951|gb|ACQ61374.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae MJ-1236] gi|254843962|gb|EET22376.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae MO10] gi|255736615|gb|EET92012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholera CIRS 101] gi|262021264|gb|EEY39978.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae RC27] gi|262029827|gb|EEY48475.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae INDRE 91/1] Length = 371 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 120/378 (31%), Positives = 192/378 (50%), Gaps = 26/378 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA Sbjct: 7 ANSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 63 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 64 QAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY+R + M R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 124 LDADYIAMGHYVRRTF---PQNGEKPQMLRGLDGNKDQSYFLYTLSHEQVARTLFPVGEL 180 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL A K DS ICF+ + K+ D + R A G I G+++G Sbjct: 181 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGE 238 Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307 H G++ +T+GQR+GL + +P +V D + +I L+ H + + Sbjct: 239 HQGLMYHTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQ 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACV 366 ++W+ + + +C VK R Q + + +DD + V F++ +V V GQ+ V Sbjct: 299 LHWVD----RTPITEPVRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAV 354 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 355 FYQGEI----CLGGGIIE 368 >gi|262274515|ref|ZP_06052326.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Grimontia hollisae CIP 101886] gi|262221078|gb|EEY72392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Grimontia hollisae CIP 101886] Length = 370 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 122/380 (32%), Positives = 193/380 (50%), Gaps = 27/380 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA Sbjct: 3 DNSSKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNDE---YCSAAEDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 60 QAVCDKLEIPLHTINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY+R + M R +D +DQSYFL+ + Q+ FP+GD+ Sbjct: 120 LEADYIAMGHYVRRTFPTKT--GEKAQMLRGLDSNKDQSYFLYTLSHDQVARSLFPVGDL 177 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL A K DS ICF+ + K+ D + + A G I ++G+ +G Sbjct: 178 EKPEVRRIAEEQGLVTAKKKDSTGICFIGERKFTDFLSKYLP--AQPGIIETVDGKKIGE 235 Query: 256 HNGIINYTIGQRRGLGVAMGE-------PLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 H G++ +T+GQR+GL + + P +VV D + +IV L + Sbjct: 236 HQGLMYHTLGQRKGLHIGGQKGGNGNEAPWYVVDKDVERNVLIVAQGHDHPRLFSKGLIA 295 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQA 364 +++W+ + + KC VK R Q + ++ D D + V F++ + V GQ+ Sbjct: 296 AQLHWVD----RKTMTEPLKCTVKTRYRQQDISCTIEPIDGDQIKVIFDEPQAAVTPGQS 351 Query: 365 CVFYTSDSNEARVLGGGIIS 384 VFY+ D LGGGII Sbjct: 352 AVFYSGDV----CLGGGIIE 367 >gi|146322015|ref|YP_001201726.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis 98HAH33] gi|145692821|gb|ABP93326.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Streptococcus suis 98HAH33] gi|292559420|gb|ADE32421.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus suis GZ1] Length = 423 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 134/391 (34%), Positives = 196/391 (50%), Gaps = 25/391 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 50 MSIDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 106 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 107 KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 166 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG Sbjct: 167 MNLGADYVATGHYAQ----VTRDEDGTVHMLRGADNGKDQTYFLSQLSQEQLQKTMFPLG 222 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR++A GL A K DS ICF+ + + + + + A G ++ ++G+ + Sbjct: 223 HLQKPQVREIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLP--AQPGRMMTVDGRDM 280 Query: 254 GRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 G H G++ YTIGQR GLG+ EP FVV D + + + VG ESL + Sbjct: 281 GEHTGLMYYTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVGQGFYHESLMSTSLQA 340 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 ++++ D E +C K R Q V V+ D V F + + + GQA Sbjct: 341 SQVHFTRDMPEE----FTLECTAKFRYRQPDSQVTVKVKGDKAEVIFAEPQRAITPGQAV 396 Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEESL 396 VFY LGGG+I + + + + Sbjct: 397 VFYDG----QECLGGGMIDMAYKDGEACQYI 423 >gi|240850925|ref|YP_002972325.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella grahamii as4aup] gi|240268048|gb|ACS51636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella grahamii as4aup] Length = 409 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 224/392 (57%), Positives = 291/392 (74%), Gaps = 5/392 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL P+D R+VVAMSGGVDSSVVA LLK++GY+VIG+TLQLY+ A+ R G+CC Sbjct: 3 LNSLDLPGQPEDSRIVVAMSGGVDSSVVAGLLKKEGYNVIGITLQLYDHGAATHRVGACC 62 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV +T+ + HYV DYE+RFR AVI PFA SYA GETP+PC+ CN+TVKF+D Sbjct: 63 AGQDIEDARRVAETLGIPHYVLDYEKRFREAVIDPFAESYAHGETPVPCIACNQTVKFAD 122 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R+LGAD LATGHYIRSR + R + RP+D +RDQSYFLFATTQ+Q+ L Sbjct: 123 LLATARELGADALATGHYIRSRSH-----GAHRALFRPLDNDRDQSYFLFATTQEQIDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGD+ K VR++A EMG +A+K DSQDICFV QGKY DV+ ++ A G IVH+ Sbjct: 178 RFPLGDLPKARVREMAAEMGFVVANKHDSQDICFVPQGKYSDVIAKLRPEAANPGVIVHI 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G+ILG+H+GI+NYT+GQRRG+GV+ GE L+VVYLD ++RVIVGPRE LE H+++LR++ Sbjct: 238 DGKILGKHSGIVNYTVGQRRGIGVSTGEALYVVYLDVENARVIVGPREMLETHKLFLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD + G + VK+RS++ P + + VD + E GVA GQACV Y Sbjct: 298 NWLGDESLDKFPSQGIEVAVKVRSTRPPHLARLHYKEGIFSVDLLECENGVAPGQACVLY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 + +EAR+LGGG ++ S+R+ E L V+ Sbjct: 358 DGNGHEARILGGGFVTHSERAADTEMMLKRVL 389 >gi|163868748|ref|YP_001609965.1| tRNA-specific 2-thiouridylase MnmA [Bartonella tribocorum CIP 105476] gi|205812594|sp|A9IWH0|MNMA_BART1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|161018412|emb|CAK01970.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella tribocorum CIP 105476] Length = 407 Score = 503 bits (1296), Expect = e-140, Method: Composition-based stats. Identities = 225/392 (57%), Positives = 293/392 (74%), Gaps = 5/392 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL P+D R+VVAMSGGVDSSVVA LLKR+GY+VIG+TLQLY+ A+ R G+CC Sbjct: 3 LNSLDLPGQPEDSRIVVAMSGGVDSSVVAGLLKREGYNVIGITLQLYDHGAATHRVGACC 62 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV + + + HYV DYE+RFR AVI PFA SYA GETP+PC+ CN+TVKF+D Sbjct: 63 AGQDIEDARRVAEMLGIPHYVLDYEKRFREAVIDPFAESYAHGETPVPCIACNQTVKFAD 122 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R+LGAD LATGHYIRSR + R + RP+D +RDQSYFLFATTQ+Q+ L Sbjct: 123 LLATARELGADALATGHYIRSRSH-----GAHRALFRPLDNDRDQSYFLFATTQEQIDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGD+ K VR++A EMGL +A+K DSQDICFV QGKY DV+ ++ A G IVH+ Sbjct: 178 RFPLGDLPKARVREIAAEMGLVVANKHDSQDICFVPQGKYSDVIAKLRPEAANPGFIVHI 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G+ILG+H+GI+NYT+GQRRG+GV+ GE L+VVYLD ++RVIVGPRE LE H+++LR++ Sbjct: 238 DGKILGKHSGIVNYTVGQRRGIGVSTGEALYVVYLDVENARVIVGPREMLETHKLFLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD ++ G + VK+RS++ P + + VD + E GVA GQACV Y Sbjct: 298 NWLGDESLDNFPSQGIEVAVKVRSTRPPHLACLHYKEGVFSVDLLECENGVAPGQACVLY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 + +EAR+LGGG ++ S+R+ +E L V+ Sbjct: 358 DGNGHEARILGGGFVTHSERAADIEVMLKRVL 389 >gi|258424047|ref|ZP_05686929.1| tRNA methyl transferase [Staphylococcus aureus A9635] gi|257845668|gb|EEV69700.1| tRNA methyl transferase [Staphylococcus aureus A9635] Length = 372 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 135/379 (35%), Positives = 204/379 (53%), Gaps = 20/379 (5%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + KD+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D D Sbjct: 2 SNKDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L L Sbjct: 59 IEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R + M R +D +DQ+YFL +QQQL + FP+GD++ Sbjct: 119 GADYVATGHYARIHRH----EDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIE 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A E GL A K DS ICF+ + + + + A GD++ L+G+ +G+H Sbjct: 175 KSEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKH 232 Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +G++ YTIGQR GLG+ G+P FVV + + + V +L + + +++ Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHNALYSDYLIASDYSFVN 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371 ++ + GF+C K R Q VFV+R +D + V F++ + GQA VFY D Sbjct: 293 PE--DNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFDEPVRAITPGQAVVFYQGD 350 Query: 372 SNEARVLGGGIISGSKRSD 390 LGG I +++ Sbjct: 351 V----CLGGATIDDVFKNE 365 >gi|52081229|ref|YP_080020.1| tRNA-specific 2-thiouridylase MnmA [Bacillus licheniformis ATCC 14580] gi|52786609|ref|YP_092438.1| tRNA-specific 2-thiouridylase MnmA [Bacillus licheniformis ATCC 14580] gi|319644804|ref|ZP_07999037.1| tRNA-specific 2-thiouridylase mnmA [Bacillus sp. BT1B_CT2] gi|73919897|sp|Q65GR9|MNMA_BACLD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|52004440|gb|AAU24382.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Bacillus licheniformis ATCC 14580] gi|52349111|gb|AAU41745.1| TrmU [Bacillus licheniformis ATCC 14580] gi|317392613|gb|EFV73407.1| tRNA-specific 2-thiouridylase mnmA [Bacillus sp. BT1B_CT2] Length = 372 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 141/383 (36%), Positives = 199/383 (51%), Gaps = 21/383 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K P+D RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MAKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D +VC+ I + +Y ++E+++ V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVIKVCNQIGIPYYAVNFEKQYWEKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY R D R M R +D +DQ+YFL T++QL + FP+G Sbjct: 118 LSLGADYLATGHYARV-----DRTDGRVKMLRGLDENKDQTYFLNQLTEEQLSKVLFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR++A+E GL A K DS ICF+ + + + + A GD+ + G+ Sbjct: 173 QLQKSRVREIAKEAGLATAAKKDSTGICFIGERNFKTFLSQYLP--AQPGDMRTMEGEFK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 GRH+G++ YTIGQR GLG+ GEP FVV D + + V L +I ++ Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFVVGKDLEKNILYVDQGFDNPLLFSDKITATNVS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368 ++ G+F + C K R Q V V+ D V F++ V GQA VFY Sbjct: 291 FVHKGVFGGE--EELACTAKFRYRQADHEVTVRMTGTDEAEVVFKEPVRAVTPGQAVVFY 348 Query: 369 TSDSNEARVLGGGIISGSKRSDA 391 + LGGG I + Sbjct: 349 KGE----ECLGGGTIDDVFKDGQ 367 >gi|212638582|ref|YP_002315102.1| tRNA-specific 2-thiouridylase MnmA [Anoxybacillus flavithermus WK1] gi|212560062|gb|ACJ33117.1| tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase [Anoxybacillus flavithermus WK1] Length = 371 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 140/374 (37%), Positives = 197/374 (52%), Gaps = 23/374 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D D RVC+ Sbjct: 9 RVVVGMSGGVDSSVAALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDYEDVVRVCN 65 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+++ V F Y AG TP P V CN+ +KF L LGAD L Sbjct: 66 QIGIPYYAVNFEKQYWEKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHAMALGADYL 125 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R G+ + R +D +DQ+YFL Q QL + FP+G+++K VR Sbjct: 126 ATGHYARVAYRDGE-----YQLLRGLDANKDQTYFLNQLGQAQLSKVLFPIGELQKSKVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A+E GL A K DS ICF+ + + + A G++ L+G++ G H+G++ Sbjct: 181 EIAKEAGLATAGKKDSTGICFIGERNFKQFLSNYLP--AQPGEMQTLDGEVKGTHDGLMY 238 Query: 262 YTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFE 317 YTIGQR GLG+ GEP FVV + + + V E L I +NW+ D Sbjct: 239 YTIGQRHGLGIGGSGEPWFVVGKNLKDNILYVAQGFDNELLYSDAIIATNVNWVSDRKPN 298 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + C K R Q VPV V+ D+ V F + V GQA VFY + + Sbjct: 299 EPIA----CTAKFRYRQPDVPVTVEMIDETTARVSFSQRVRAVTPGQAVVFYNGE----Q 350 Query: 377 VLGGGIISGSKRSD 390 LGGG I R+ Sbjct: 351 CLGGGTIDQVFRNG 364 >gi|75674801|ref|YP_317222.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrobacter winogradskyi Nb-255] gi|123614062|sp|Q3SV21|MNMA_NITWN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|74419671|gb|ABA03870.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrobacter winogradskyi Nb-255] Length = 400 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 214/397 (53%), Positives = 280/397 (70%), Gaps = 5/397 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL+ P+D RVVVAMSGGVDSSV AALLK +GYDV+G+TLQLY+ A+ RKG+CC Sbjct: 2 LNSLDLEGRPQDTRVVVAMSGGVDSSVTAALLKSEGYDVVGITLQLYDHGAATHRKGACC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V + V HYV DYE RFR VI FA SYA+GETP+PC++CNR VKF D Sbjct: 62 AGQDIHDARNVAARLGVPHYVLDYESRFRETVIENFADSYASGETPVPCIECNRQVKFRD 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R+LGA LATGHY+ SR R + D +RDQSYFLFATT++QL L Sbjct: 122 LLATARELGAAALATGHYVSSRRLAD----GSRALLCAADTDRDQSYFLFATTREQLDFL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K+ R+LAR GL +ADK DSQDICFV G+Y D++ R+ + GDIV L Sbjct: 178 RFPLGDMTKQQTRELARRFGLSVADKHDSQDICFVPTGRYTDIISRLKPNAMVSGDIVDL 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G ++G H GI+++T+GQRRGLG+A G PL+V+ LD + RV+VGPRE+L++HRI LR++ Sbjct: 238 DGHVIGHHEGIVHFTVGQRRGLGIASGAPLYVLSLDAANRRVVVGPREALKMHRIVLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GDG + A+ G + FV++RS++ P P +++ D V+ E GV+ GQACVFY Sbjct: 298 NWIGDGALDRAIGAGLELFVRVRSTRRPQPAWLRVVDGRYEVELVAGEEGVSPGQACVFY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLS-VIGDEF 404 ++RVLGGG I+ + A E + S + F Sbjct: 358 DGAEGQSRVLGGGFIARAMAQRANEAAAQSGTLAQSF 394 >gi|226312727|ref|YP_002772621.1| tRNA U34-sulfurtransferase [Brevibacillus brevis NBRC 100599] gi|226095675|dbj|BAH44117.1| tRNA U34-sulfurtransferase [Brevibacillus brevis NBRC 100599] Length = 370 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 138/381 (36%), Positives = 202/381 (53%), Gaps = 27/381 (7%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K P+D RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D D Sbjct: 2 KRPEDTRVVVGMSGGVDSSVTAYLLKQQGYDVIGIFMKNWDD---TDEFGHCTAEEDFQD 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 RRVC+ I + +Y ++E+ + + V F Y G TP P V CNR +KF +LL+ Sbjct: 59 VRRVCEQIGIPYYTVNFEKEYMDKVFQYFLDEYKRGRTPNPDVMCNREIKFGELLAKVMD 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY + + G+ + R D +DQ+YFL Q+QL FP+G + Sbjct: 119 LGADYIATGHYAQVKYIDGE-----YKLIRGADNNKDQTYFLNVLGQEQLSKTMFPIGHL 173 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K VR++A + GL A K DS ICF+ + + + ++ A +G+I ++G ++G Sbjct: 174 PKPQVREIAEKAGLYTAKKKDSTGICFIGERNFREFLQNYLP--AKQGNIETVDGAVIGT 231 Query: 256 HNGIINYTIGQRR-----GLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLRE 307 H+G++ YT+GQR+ G G+P FVV D + +IVG L + Sbjct: 232 HDGLMYYTLGQRQGLGIGGGHGTSGQPWFVVDKDLERNALIVGEGSDHIRLYSKSLLATN 291 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 ++W+ D + F C K R Q V V +DG V V F++ + V GQA V Sbjct: 292 VSWVSD----KKPSETFTCTAKFRYRQPDQGVTVHLLEDGNVEVVFDQPQKAVTPGQAVV 347 Query: 367 FYTSDSNEARVLGGGIISGSK 387 FY + LGGG I + Sbjct: 348 FYNGEV----CLGGGTIDKVR 364 >gi|258539512|ref|YP_003174011.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus rhamnosus Lc 705] gi|257151188|emb|CAR90160.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus rhamnosus Lc 705] Length = 372 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 132/379 (34%), Positives = 188/379 (49%), Gaps = 25/379 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A D D Sbjct: 2 DNSNTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F Y AG TP P V CN+ +KF L QL Sbjct: 59 AKVASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY + + D + M R D +DQ+YFL +Q QL FP+G ++ Sbjct: 119 NADYIAMGHYAQVKT----DEQGVVHMLRGADGNKDQTYFLSQLSQDQLKKSMFPIGHLQ 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + A G ++ ++G G H Sbjct: 175 KPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEKGTH 232 Query: 257 NGIINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 +G++ YTIGQR+GLG+ EP FVV D + + + VG +L + +N Sbjct: 233 DGLMYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLN 292 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W +A DG K R Q V + +DDG VDF+ + GQA VFY Sbjct: 293 WTTG----EAPADGTHMTAKFRYRQRDTGVTIHYHDDGTATVDFDVPVRAITPGQAVVFY 348 Query: 369 TSDSNEARVLGGGIISGSK 387 + LGGG I + Sbjct: 349 DGE----ECLGGGTIDAAY 363 >gi|325567216|ref|ZP_08143883.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus casseliflavus ATCC 12755] gi|325158649|gb|EGC70795.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus casseliflavus ATCC 12755] Length = 372 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 134/388 (34%), Positives = 199/388 (51%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + ++ RVVV MSGGVDSSV A LLK GYDV+G+ ++ ++ + G C A +D D Sbjct: 2 SNENTRVVVGMSGGVDSSVTALLLKEQGYDVVGIFMKNWDD---TDENGVCTATEDYKDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 59 AKVAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R +D +DQ+YFL +Q+QL FPLG M+ Sbjct: 119 GADYVATGHYAQVTV----DENGVTHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGME 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS +CF+ + + + A +G++V L+G++ G+H Sbjct: 175 KSEVRAIAERAGLATAKKKDSTGVCFIGEKNFKQFLSNYLP--AKKGNMVTLDGEVKGQH 232 Query: 257 NGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 +G++ YTI G G G A EP FVV D ++ + VG +L +R+ +I+ Sbjct: 233 DGLMYYTIGQRQGLGIGGGGATQEPWFVVGKDLATNTLYVGQGFHHPALYAYRLEASQIH 292 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368 + E F C K R Q VPV V+ D D V F++ + GQA VFY Sbjct: 293 FTT----EQDRGTEFSCTAKFRYRQQDVPVTVRLLDGDRAEVIFDEPVRAITPGQAVVFY 348 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGG+I + + + + Sbjct: 349 DG----MECLGGGLIDAAYKEAKELQYV 372 >gi|125624516|ref|YP_001032999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|124493324|emb|CAL98297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactococcus lactis subsp. cremoris MG1363] gi|300071310|gb|ADJ60710.1| tRNA-specific 2-thiouridylase MnmA [Lactococcus lactis subsp. cremoris NZ9000] Length = 384 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 138/390 (35%), Positives = 195/390 (50%), Gaps = 26/390 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+P RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 12 KSPAQTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 68 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 V D I V +Y ++E+ + + V F + Y AG TP P V CN+ +KF L + Sbjct: 69 VAAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAME 128 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY + R D M R D +DQ+YFL TQ+QL FPLG + Sbjct: 129 LGADYVATGHYAQVRT----DEDGTVHMLRGADNNKDQTYFLSQLTQEQLKKTMFPLGHL 184 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + GL A K DS ICF+ + + + A G ++ L+G +G Sbjct: 185 EKPEVRRIAEKAGLATAKKKDSTGICFIGEKNFKKFLGEYLP--AQPGKMMTLDGVEMGN 242 Query: 256 HNGIINYTIGQRRGLGVA------MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLR 306 H G++ YTIGQR GLG+ +P FVV D ++ + VG E L + Sbjct: 243 HAGLMYYTIGQRGGLGIGGQHGQLTSDPWFVVGKDLTTNTLYVGQGFHHEHLYSTSLDAS 302 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 ++++ + C K R Q+ V + N D V VDF++ + GQA V Sbjct: 303 DLSFTREM----PETFDLHCTAKFRYRQEDTGVTIHVNGDKVTVDFDEPVRAITPGQAVV 358 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396 FY + LGG +I + + V + Sbjct: 359 FYDGE----ECLGGAMIDVAYKEQKVMQYQ 384 >gi|257876279|ref|ZP_05655932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus casseliflavus EC20] gi|257810445|gb|EEV39265.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus casseliflavus EC20] Length = 372 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 134/388 (34%), Positives = 198/388 (51%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + ++ RVVV MSGGVDSSV A LLK GYDV+G+ ++ ++ + G C A +D D Sbjct: 2 SNENTRVVVGMSGGVDSSVTALLLKEQGYDVVGIFMKNWDD---TDENGVCTATEDYKDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 59 AKVAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R +D +DQ+YFL +Q+QL FPLG M+ Sbjct: 119 GADYVATGHYAQVTV----DENGVTHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGME 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS +CF+ + + + A +G++V L+G++ G+H Sbjct: 175 KSEVRAIAERAGLATAKKKDSTGVCFIGEKNFKQFLSNYLP--AKKGNMVTLDGEVKGQH 232 Query: 257 NGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 +G++ YTI G G G A EP FVV D ++ + VG +L R+ +I+ Sbjct: 233 DGLMYYTIGQRQGLGIGGGGATQEPWFVVGKDLATNTLYVGQGFHHPALYADRLEASQIH 292 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368 + E F C K R Q VPV V+ D D V F++ + GQA VFY Sbjct: 293 FTT----EQDRGTEFSCTAKFRYRQQDVPVTVRLLDGDRAEVIFDEPVRAITPGQAVVFY 348 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGG+I + + + + Sbjct: 349 DG----MECLGGGLIDAAYKEAKELQYV 372 >gi|281491325|ref|YP_003353305.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactococcus lactis subsp. lactis KF147] gi|14195271|sp|Q9CHA1|MNMA_LACLA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|281375066|gb|ADA64584.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactococcus lactis subsp. lactis KF147] Length = 376 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 138/390 (35%), Positives = 196/390 (50%), Gaps = 26/390 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+P RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 4 KSPAQTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 60 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 V D I V +Y ++E+ + + V F + Y AG TP P V CN+ +KF L + Sbjct: 61 VAAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAME 120 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY + R D M R D +DQ+YFL TQ+QL FPLG + Sbjct: 121 LGADYVATGHYAQVRT----DENGIVHMLRGADNNKDQTYFLSQLTQEQLKKTMFPLGHL 176 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + GL A K DS ICF+ + + + A G ++ L+G +G Sbjct: 177 EKPEVRKIAEKAGLATAKKKDSTGICFIGEKNFKKFLGEYLP--AQPGKMMTLDGIEMGN 234 Query: 256 HNGIINYTIGQRRGLGVA------MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLR 306 H G++ YTIGQR GLG+ +P FVV D ++ + VG E L + Sbjct: 235 HAGLMYYTIGQRGGLGIGGQHGQLTSDPWFVVGKDLTTNTLYVGQGFHHEHLYSTSLDAS 294 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 ++++ + C K R Q+ V + N D V VDF++ + GQA V Sbjct: 295 DLSFTREM----PETFDLHCTAKFRYRQEDTGVTIHVNGDKVTVDFDEPVRAITPGQAVV 350 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396 FY + LGG +I + ++ V + Sbjct: 351 FYDGE----ECLGGAMIDVAYKAQKVMQYQ 376 >gi|257866681|ref|ZP_05646334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus casseliflavus EC30] gi|257872802|ref|ZP_05652455.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus casseliflavus EC10] gi|257800639|gb|EEV29667.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus casseliflavus EC30] gi|257806966|gb|EEV35788.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus casseliflavus EC10] Length = 372 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 134/388 (34%), Positives = 198/388 (51%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + ++ RVVV MSGGVDSSV A LLK GYDV+G+ ++ ++ + G C A +D D Sbjct: 2 SNENTRVVVGMSGGVDSSVTALLLKEQGYDVVGIFMKNWDD---TDENGVCTATEDYKDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 59 AKVAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R +D +DQ+YFL +Q+QL FPLG M+ Sbjct: 119 GADYVATGHYAQVTV----DENGVTHMLRGVDNNKDQTYFLSQLSQEQLSKTMFPLGGME 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS +CF+ + + + A +G++V L+G++ G+H Sbjct: 175 KSEVRAIAERAGLATAQKKDSTGVCFIGEKNFKQFLSNYLP--AKKGNMVTLDGEVKGQH 232 Query: 257 NGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 +G++ YTI G G G A EP FVV D ++ + VG +L R+ +I+ Sbjct: 233 DGLMYYTIGQRQGLGIGGGGATQEPWFVVGKDLATNTLYVGQGFHHPALYADRLEASQIH 292 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368 + E F C K R Q VPV V+ D D V F++ + GQA VFY Sbjct: 293 FTT----EQDRGTEFSCTAKFRYRQQDVPVTVRLLDGDRAEVIFDEPVRAITPGQAVVFY 348 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGG+I + + + + Sbjct: 349 DG----MECLGGGLIDAAYKEAKELQYV 372 >gi|229552096|ref|ZP_04440821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus rhamnosus LMS2-1] gi|229314529|gb|EEN80502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus rhamnosus LMS2-1] Length = 377 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 132/379 (34%), Positives = 188/379 (49%), Gaps = 25/379 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A D D Sbjct: 7 DNSNTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDV 63 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F Y AG TP P V CN+ +KF L QL Sbjct: 64 AKVASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQL 123 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY + + D + M R D +DQ+YFL +Q QL FP+G ++ Sbjct: 124 NADYIAMGHYAQVKT----DEQGVVHMLRGADGNKDQTYFLSQLSQDQLKKSMFPIGHLQ 179 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + A G ++ ++G G H Sbjct: 180 KPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEKGTH 237 Query: 257 NGIINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 +G++ YTIGQR+GLG+ EP FVV D + + + VG +L + +N Sbjct: 238 DGLMYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLN 297 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W +A DG K R Q V + +DDG VDF+ + GQA VFY Sbjct: 298 WTTG----EAPADGTHMTAKFRYRQRDTGVTIHYHDDGTATVDFDVPVRAITPGQAVVFY 353 Query: 369 TSDSNEARVLGGGIISGSK 387 + LGGG I + Sbjct: 354 DGE----ECLGGGTIDAAY 368 >gi|217978097|ref|YP_002362244.1| tRNA-specific 2-thiouridylase MnmA [Methylocella silvestris BL2] gi|217503473|gb|ACK50882.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylocella silvestris BL2] Length = 415 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 220/385 (57%), Positives = 275/385 (71%), Gaps = 7/385 (1%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 LNSL L K P RVVVAMSGGVDSSVVAAL+K GYDVI VT+QLY+ +A RKG+C Sbjct: 17 ELNSLGLPKPPAQTRVVVAMSGGVDSSVVAALMKEQGYDVIAVTMQLYDHGEAIHRKGAC 76 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 CAGQD+ DAR V +++ HYV DYEERFR VI PF+ SYA GETP+PCV CN +KF+ Sbjct: 77 CAGQDIQDARLVAARLDIPHYVLDYEERFREKVINPFSHSYATGETPIPCVSCNSEIKFA 136 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DL LGADVLATGHY+ +R D R++ R D RDQSYFLFATT++QL Sbjct: 137 DLFDTALDLGADVLATGHYVSTRS----DEAGERVLHRAFDGARDQSYFLFATTRRQLQM 192 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 LRFPLGDM K VR LAR GL +ADK+DSQDICFV +GKY D+++R++ G A+ G+IVH Sbjct: 193 LRFPLGDMTKTDVRALARRFGLIVADKADSQDICFVPKGKYSDLIERLSPGAAVPGEIVH 252 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVA---MGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 ++G++LGRH G+I+YTIGQRRGLG+ GEPLFV+ LD +RV+VGPRE+L R + Sbjct: 253 IDGRVLGRHAGVIHYTIGQRRGLGLGDANAGEPLFVIKLDAAGARVVVGPREALATRRAH 312 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 LR +NW+GDG D +G FV++RS++ PV + D G +V+F E V+ GQA Sbjct: 313 LRAVNWIGDGELGDLPREGADIFVQVRSTRPPVAGRLYARDGGAHVEFVHDEDSVSPGQA 372 Query: 365 CVFYTSDSNEARVLGGGIISGSKRS 389 CVFY SD ARVLGGG IS ++ + Sbjct: 373 CVFYASDQPRARVLGGGFISSTESA 397 >gi|146342725|ref|YP_001207773.1| tRNA-specific 2-thiouridylase MnmA [Bradyrhizobium sp. ORS278] gi|205811327|sp|A4Z082|MNMA_BRASO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|146195531|emb|CAL79558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bradyrhizobium sp. ORS278] Length = 397 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 218/390 (55%), Positives = 278/390 (71%), Gaps = 4/390 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL+ P+D RVVVAMSGGVDSSV AALLK GYDV+G+TLQLY+ A+ RKG+CC Sbjct: 2 LNSLDLEGRPEDTRVVVAMSGGVDSSVTAALLKSQGYDVVGITLQLYDHGAATHRKGACC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V + + + HYV DYE+RFR +VI FA+SYA+GETP+PC++CNR +KF D Sbjct: 62 AGQDIHDARNVAERLGIPHYVLDYEDRFRESVIDNFAASYASGETPVPCIECNRAIKFGD 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL R+LGA VLATGHY+ SR R + D +RDQSYFLFATT++QL L Sbjct: 122 LLKTARELGASVLATGHYVASRRLPD----GSRALTCAADADRDQSYFLFATTREQLDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K VR+LAR L++ADK DSQDICFV G+Y D++ ++ G+IV L Sbjct: 178 RFPLGDMTKPEVRELARRFELEVADKHDSQDICFVPTGRYTDIIGKLRPNAMEPGEIVDL 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 NG++LG H GI NYTIGQR+GLG+A G PL+VV LD + RV+VGPRE+L HRI LRE+ Sbjct: 238 NGRVLGAHQGIANYTIGQRKGLGIAAGAPLYVVKLDVTTRRVVVGPREALRTHRITLREV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GDG + AV DG + FV++RS++ P P +++ D V+ E GV+ GQACVFY Sbjct: 298 NWIGDGALDAAVRDGLELFVRVRSTRAPQPAWLRGADGSYEVELVGGEEGVSPGQACVFY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLS 398 + S ARVLGGG I + + L+ Sbjct: 358 DAASGRARVLGGGFIQSAVAESSATAGLVR 387 >gi|319759218|gb|ADV71160.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis JS14] Length = 419 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 134/391 (34%), Positives = 196/391 (50%), Gaps = 25/391 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 46 MSIDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 102 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 103 KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 162 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG Sbjct: 163 MNLGADYVATGHYAQ----VTRDEDGTVHMLRGADNGKDQTYFLSQLSQEQLQKTMFPLG 218 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR++A GL A K DS ICF+ + + + + + A G ++ ++G+ + Sbjct: 219 HLQKPQVREIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLP--AQPGRMMTVDGRDM 276 Query: 254 GRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 G H G++ YTIGQR GLG+ EP FVV D + + + VG ESL + Sbjct: 277 GEHTGLMYYTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVGQGFYHESLMSTSLQA 336 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 ++++ D E +C K R Q V V+ D V F + + + GQA Sbjct: 337 SQVHFTRDMPEE----FTLECTAKFRYRQPDSQVTVKVKGDKAEVIFAEPQRAITPGQAV 392 Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEESL 396 VFY LGGG+I + + + + Sbjct: 393 VFYDG----QECLGGGMIDMAYKDGEACQYI 419 >gi|258508299|ref|YP_003171050.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus rhamnosus GG] gi|257148226|emb|CAR87199.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus rhamnosus GG] Length = 372 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 132/379 (34%), Positives = 188/379 (49%), Gaps = 25/379 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A D D Sbjct: 2 DNSNTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F Y AG TP P V CN+ +KF L QL Sbjct: 59 AKVASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY + + D + M R D +DQ+YFL +Q QL FP+G ++ Sbjct: 119 NADYIAMGHYAQVKT----DEQGAVHMLRGADGNKDQTYFLSQLSQDQLKKSMFPIGHLQ 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + A G ++ ++G G H Sbjct: 175 KPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEKGTH 232 Query: 257 NGIINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 +G++ YTIGQR+GLG+ EP FVV D + + + VG +L + +N Sbjct: 233 DGLMYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLN 292 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W +A DG K R Q V + +DDG VDF+ + GQA VFY Sbjct: 293 WTTG----EAPADGTHMTAKFRYRQRDTGVTIHYHDDGTATVDFDVPVRAITPGQAVVFY 348 Query: 369 TSDSNEARVLGGGIISGSK 387 + LGGG I + Sbjct: 349 DGE----ECLGGGTIDAAY 363 >gi|199598161|ref|ZP_03211583.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, PP-loop ATPase [Lactobacillus rhamnosus HN001] gi|199590922|gb|EDY99006.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, PP-loop ATPase [Lactobacillus rhamnosus HN001] Length = 377 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 133/379 (35%), Positives = 189/379 (49%), Gaps = 25/379 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A D D Sbjct: 7 DNSNTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDV 63 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F Y AG TP P V CN+ +KF L QL Sbjct: 64 AKVASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQL 123 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY + + D + M R D +DQ+YFL +Q QL FP+G ++ Sbjct: 124 NADYIAMGHYAQVKT----DEQGVVHMLRGADGNKDQTYFLSQLSQDQLKKSMFPIGHLQ 179 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + A G ++ ++G G H Sbjct: 180 KPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEKGTH 237 Query: 257 NGIINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 +G++ YTIGQR+GLG+ EP FVV D + + + VG +L + +N Sbjct: 238 DGLMYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLN 297 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W +A VDG K R Q V + +DDG VDF+ + GQA VFY Sbjct: 298 WTTG----EAPVDGTHMTAKFRYRQRDTGVTIHYHDDGTATVDFDVPVRAITPGQAVVFY 353 Query: 369 TSDSNEARVLGGGIISGSK 387 + LGGG I + Sbjct: 354 DGE----ECLGGGTIDAAY 368 >gi|289550612|ref|YP_003471516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus lugdunensis HKU09-01] gi|315658107|ref|ZP_07910979.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus lugdunensis M23590] gi|289180144|gb|ADC87389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus lugdunensis HKU09-01] gi|315496436|gb|EFU84759.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus lugdunensis M23590] Length = 370 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 141/378 (37%), Positives = 204/378 (53%), Gaps = 22/378 (5%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + KD+RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 2 SNKDIRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 VC+ I + +Y ++EE + N V F Y G TP P V CN+ +KF L +L Sbjct: 59 IAVCNQIGIPYYAVNFEEEYWNKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R + Y DDG M R +D +DQ+YFL +QQQL + FP+GD++ Sbjct: 119 GADYVATGHYARLKRY--DDG--HVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIE 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ VR +A E GL A K DS ICF+ + + + + A GD+ L+G+ +G H Sbjct: 175 KKEVRRIAEEQGLATAKKKDSTGICFIGERNFKSFLSQYLP--AQAGDMRTLDGKKMGVH 232 Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +G++ YTIGQR GLG+ G+P FVV + + + V ++L + + +++ Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLVDNVLYVEQGFHHDALYSDYLIASDYSFVN 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371 E GF C K R Q V V+R DD + V F++ + GQ+ VFY + Sbjct: 293 PVDLER----GFNCTAKFRYRQQDTEVSVERVDDHSIKVTFKEPVRAITPGQSVVFYDGE 348 Query: 372 SNEARVLGGGIISGSKRS 389 LGG I ++ Sbjct: 349 I----CLGGATIDDVYKT 362 >gi|153214224|ref|ZP_01949259.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae 1587] gi|153802718|ref|ZP_01957304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae MZO-3] gi|153828671|ref|ZP_01981338.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae 623-39] gi|254225518|ref|ZP_04919128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae V51] gi|297578730|ref|ZP_06940658.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae RC385] gi|124115473|gb|EAY34293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae 1587] gi|124121758|gb|EAY40501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae MZO-3] gi|125621988|gb|EAZ50312.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae V51] gi|148875824|gb|EDL73959.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae 623-39] gi|297536324|gb|EFH75157.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae RC385] Length = 372 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 120/378 (31%), Positives = 192/378 (50%), Gaps = 26/378 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA Sbjct: 8 ANSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 64 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 65 QAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 124 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY+R + M R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 125 LDADYIAMGHYVRRTF---PQNGEKPQMLRGLDGNKDQSYFLYTLSHEQVARSLFPVGEL 181 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL A K DS ICF+ + K+ D + R A G I G+++G Sbjct: 182 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGE 239 Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307 H G++ +T+GQR+GL + +P +V D + +I L+ H + + Sbjct: 240 HQGLMYHTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQ 299 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACV 366 ++W+ + + +C VK R Q + + +DD + V F++ +V V GQ+ V Sbjct: 300 LHWVD----RTPITEPVRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAV 355 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 356 FYQGEI----CLGGGIIE 369 >gi|212712841|ref|ZP_03320969.1| hypothetical protein PROVALCAL_03938 [Providencia alcalifaciens DSM 30120] gi|212684533|gb|EEB44061.1| hypothetical protein PROVALCAL_03938 [Providencia alcalifaciens DSM 30120] Length = 385 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 125/388 (32%), Positives = 203/388 (52%), Gaps = 28/388 (7%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 ++ + ++V+V MSGGVDSSV A LL++ GY VIG+ ++ + + C Sbjct: 12 PMSDNSTKSDNSQIKVIVGMSGGVDSSVSAYLLQQQGYQVIGLFMKNWEEDDDEE---YC 68 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 A D+ DA+ VCD + + ++ + + V F Y AG TP P + CN+ +KF Sbjct: 69 SAATDLADAQAVCDKLGIELRTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFK 128 Query: 128 DLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L LGAD +ATGHY+R R D + + R +D +DQSYFL+ + +Q+ Sbjct: 129 AFLEFAAEDLGADYIATGHYVRRR-----DVDGKSQLLRGLDNNKDQSYFLYTLSHEQVA 183 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 FP+G+++K VR +A E+GL A K DS ICF+ + K+ D + R A G IV Sbjct: 184 KSLFPVGELEKPEVRRIAEEIGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIV 241 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESL 298 ++G+I+G+H G++ +T+GQR+GLG+ EP +VV D ++++IV L Sbjct: 242 TVDGEIIGQHEGLMYHTLGQRKGLGIGGTKEGSEEPWYVVDKDVENNQLIVAQGHEHPRL 301 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + ++++W+ + + +C VK R Q +P + + + + V F+ Sbjct: 302 MSVGLIAQQLDWVD----RQPLTEPLRCVVKTRYRQADIPCTITPLSAEKIQVIFDYPVA 357 Query: 358 GVASGQACVFYTSDSNEARVLGGGIISG 385 V GQ+ VFY + LGGG+I Sbjct: 358 AVTPGQSAVFYIDEV----CLGGGVIEA 381 >gi|229515510|ref|ZP_04404969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae TMA 21] gi|229520442|ref|ZP_04409867.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae TM 11079-80] gi|229525739|ref|ZP_04415144.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae bv. albensis VL426] gi|229529783|ref|ZP_04419173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae 12129(1)] gi|229333557|gb|EEN99043.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae 12129(1)] gi|229339320|gb|EEO04337.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae bv. albensis VL426] gi|229342540|gb|EEO07533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae TM 11079-80] gi|229347279|gb|EEO12239.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae TMA 21] gi|327483833|gb|AEA78240.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Vibrio cholerae LMA3894-4] Length = 371 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 120/378 (31%), Positives = 192/378 (50%), Gaps = 26/378 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA Sbjct: 7 ANSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 63 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 64 QAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY+R + M R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 124 LDADYIAMGHYVRRTF---PQNGEKPQMLRGLDGNKDQSYFLYTLSHEQVARSLFPVGEL 180 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL A K DS ICF+ + K+ D + R A G I G+++G Sbjct: 181 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGE 238 Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307 H G++ +T+GQR+GL + +P +V D + +I L+ H + + Sbjct: 239 HQGLMYHTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQ 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACV 366 ++W+ + + +C VK R Q + + +DD + V F++ +V V GQ+ V Sbjct: 299 LHWVD----RTPITEPVRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAV 354 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 355 FYQGEI----CLGGGIIE 368 >gi|104781327|ref|YP_607825.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas entomophila L48] gi|122403646|sp|Q1IBE4|MNMA_PSEE4 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|95110314|emb|CAK15021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas entomophila L48] Length = 374 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 125/382 (32%), Positives = 198/382 (51%), Gaps = 26/382 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+P RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ D Sbjct: 7 KDPAKTRVIVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLAD 63 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ VCD I + + ++ + + V F Y AG TP P + CNR +KF L Sbjct: 64 AQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALS 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD++ATGHY+R R D + + +D +DQSYFL A +++ FP+G++ Sbjct: 124 LGADLIATGHYVRRR-----DTGELTELLKGLDPNKDQSYFLHAVGGKEIARTLFPVGEL 178 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + GL A K DS ICF+ + ++ D +K+ A G+I G+++GR Sbjct: 179 EKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGEIQTTEGEVIGR 236 Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H+G++ +TIGQR+GLG+ EP +V++ D + ++VG L + E Sbjct: 237 HHGLMYHTIGQRQGLGIGGLKDAGDEPWYVLHKDLARNVLVVGQGNEHPWLFSRALLASE 296 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 I W+ + K+R Q ++R ++G F++ + V GQ+ VF Sbjct: 297 IFWVNPIDLSSP----RRLTAKVRYRQGDQQCTLERTENGYRAMFDEPQRAVTPGQSVVF 352 Query: 368 YTSDSNEARVLGGGIISGSKRS 389 Y + LGGG+I ++ Sbjct: 353 YDGEV----CLGGGVIETAEPW 370 >gi|259649616|dbj|BAI41778.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Lactobacillus rhamnosus GG] Length = 377 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 132/379 (34%), Positives = 188/379 (49%), Gaps = 25/379 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A D D Sbjct: 7 DNSNTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDV 63 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F Y AG TP P V CN+ +KF L QL Sbjct: 64 AKVASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQL 123 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY + + D + M R D +DQ+YFL +Q QL FP+G ++ Sbjct: 124 NADYIAMGHYAQVKT----DEQGAVHMLRGADGNKDQTYFLSQLSQDQLKKSMFPIGHLQ 179 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + A G ++ ++G G H Sbjct: 180 KPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEKGTH 237 Query: 257 NGIINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 +G++ YTIGQR+GLG+ EP FVV D + + + VG +L + +N Sbjct: 238 DGLMYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLN 297 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W +A DG K R Q V + +DDG VDF+ + GQA VFY Sbjct: 298 WTTG----EAPADGTHMTAKFRYRQRDTGVTIHYHDDGTATVDFDVPVRAITPGQAVVFY 353 Query: 369 TSDSNEARVLGGGIISGSK 387 + LGGG I + Sbjct: 354 DGE----ECLGGGTIDAAY 368 >gi|329926781|ref|ZP_08281189.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paenibacillus sp. HGF5] gi|328938981|gb|EGG35349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paenibacillus sp. HGF5] Length = 389 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 140/384 (36%), Positives = 208/384 (54%), Gaps = 23/384 (5%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 + + K + R+VV MSGGVDSSV A LLK+ GY+VIG+ ++ ++ + G C A Sbjct: 19 ITMSKEKHNTRIVVGMSGGVDSSVTALLLKQQGYEVIGIFMKNWDD---TDELGYCTAEA 75 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D D RRVC+ +++ +Y ++E+ + + V F Y AG TP P V CNR +KF + L+ Sbjct: 76 DAEDVRRVCEQLDIPYYTVNFEKEYFDKVFSYFLDEYKAGRTPNPDVMCNREIKFGEFLN 135 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R + +DG+ R + R +D +DQ+YFL A +Q+QL FP Sbjct: 136 KAMDLGADYVATGHYAR---VIEEDGQYR--LLRGVDSNKDQTYFLNALSQEQLSKAMFP 190 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250 +G + K VR LA E GL A K DS +CF+ + + + + + A GD+V + G Sbjct: 191 IGHLPKPEVRRLAEEAGLYTAKKKDSTGVCFIGERNFKEFLGQYLP--AQSGDMVDIVTG 248 Query: 251 QILGRHNGIINYTIGQRR---GLGVAMGEPLFVVYLDKNSS--RVIVGPRESLEVHRIYL 305 ++ GRH+G++ YT+GQR+ G GEP FV D ++ V+ G SL + Sbjct: 249 EVKGRHDGLMYYTLGQRQGLGIGGSGSGEPWFVADKDLTNNILYVVQGDHPSLYSTGLVA 308 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364 +NW+ + D + C K R Q V + +DG V+V F K + + GQA Sbjct: 309 SGMNWIAGQ--DAMPKDAYACTAKFRYRQPDQEVTITPREDGTVHVAFAKPQKAITPGQA 366 Query: 365 CVFYTSDSNEARVLGGGIISGSKR 388 VFY D LGGG I + + Sbjct: 367 VVFYQGDD----CLGGGTIETADK 386 >gi|311069234|ref|YP_003974157.1| tRNA-specific 2-thiouridylase MnmA [Bacillus atrophaeus 1942] gi|310869751|gb|ADP33226.1| tRNA-specific 2-thiouridylase MnmA [Bacillus atrophaeus 1942] Length = 371 Score = 502 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 138/383 (36%), Positives = 203/383 (53%), Gaps = 22/383 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P+D RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVIRVCNQIGIPYYAVNFEKQYWDKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY R D + M R +D +DQ+YFL T++QL + FP+G Sbjct: 118 LSLGADYLATGHYARV-----DRSGGKVRMLRGLDENKDQTYFLNQLTEEQLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR++A+E L A K DS ICF+ + + + + A GD++ ++G++ Sbjct: 173 ELQKSRVREIAKEAELATAAKKDSTGICFIGERNFKTFLSQYLP--AQPGDMMTMDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 GRH+G++ YTIGQR GLG+ GEP F V D + + V L +I +++ Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITAADVS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368 W G+ + C K R Q+ V V+ + V F++ V GQA VFY Sbjct: 291 WTRTGILDGK---EISCTAKFRYRQEDHKVTVRMTGESEAEVIFDEQVRAVTPGQAVVFY 347 Query: 369 TSDSNEARVLGGGIISGSKRSDA 391 + LGGG I + Sbjct: 348 DGE----ECLGGGTIDDVYKDGT 366 >gi|328542757|ref|YP_004302866.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Polymorphum gilvum SL003B-26A1] gi|326412503|gb|ADZ69566.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Polymorphum gilvum SL003B-26A1] Length = 393 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 226/379 (59%), Positives = 279/379 (73%), Gaps = 8/379 (2%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL + P+D RVVVAMSGGVDSSVVA L+K++GYDV+GVTLQLY+ A +R G+CC Sbjct: 2 LNSLDLPRRPQDTRVVVAMSGGVDSSVVAGLMKQEGYDVVGVTLQLYDHGAAVQRAGACC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DARRV + + + HYV DYE RF+ AVI FA SY AGETP+PCV CN+TVKFSD Sbjct: 62 AGQDIHDARRVAERLGIPHYVLDYERRFKEAVIDRFAESYMAGETPIPCVACNQTVKFSD 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL R LGADVLATGHY+RS RR + RP DL+RDQSYFLFATTQ+QL L Sbjct: 122 LLETARTLGADVLATGHYVRSAP-----AGNRRALYRPADLDRDQSYFLFATTQEQLDFL 176 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG K VR LAR GL +ADK DSQDICFV +G+Y DV+ R+ A GDIVH+ Sbjct: 177 RFPLGGRPKAEVRALARRFGLAVADKQDSQDICFVPKGRYADVIARLRPDAAEPGDIVHV 236 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LGRH+GII+YT+GQRRGLG+A GEPL+VV LD + RV+VGPR++L R+ LR++ Sbjct: 237 DGRVLGRHDGIIHYTVGQRRGLGIAAGEPLYVVRLDAAARRVVVGPRDALATRRLSLRDL 296 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVF 367 NWLG + F K+RS++ PVP + R+ DG + V+ E GVA GQACVF Sbjct: 297 NWLGAEPLD--PGAPVALFAKVRSTRPPVPAVLTRHADGAIEVELADGETGVAPGQACVF 354 Query: 368 YTSDSNEARVLGGGIISGS 386 Y +D EARVLGGG I+ + Sbjct: 355 YDADGAEARVLGGGWIARA 373 >gi|312866787|ref|ZP_07727000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus parasanguinis F0405] gi|311097570|gb|EFQ55801.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus parasanguinis F0405] Length = 373 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 137/388 (35%), Positives = 198/388 (51%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + + RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSETRVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAR----VSRDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ +G H Sbjct: 176 KPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKEFLGNYLP--AQPGRMMTIDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG E+L ++ ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSQNILYVGQGFYHEALMSTSLHASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E +C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGKVCQYI 373 >gi|270291927|ref|ZP_06198142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sp. M143] gi|270279455|gb|EFA25297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sp. M143] Length = 383 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 139/393 (35%), Positives = 198/393 (50%), Gaps = 26/393 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L + N K RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A + Sbjct: 9 LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 64 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D D V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 65 DYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 124 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FP Sbjct: 125 YAMTLGADYVATGHYAR----VARDEDGIVHMLRGVDTGKDQTYFLSQLSQEQLQKTMFP 180 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ Sbjct: 181 LGHLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKEFLSNYLP--AQPGRMMTMDGR 238 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 +G H G++ YTIGQR GLG+ P FVV D + + + VG +SL + Sbjct: 239 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSQNILYVGQGFYHDSLMSTSL 298 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 ++++ + E +C K R Q V V D V F + + + GQ Sbjct: 299 EASQVHFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQ 354 Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396 A VFY + LGGG+I + R V + + Sbjct: 355 AVVFYDGE----ECLGGGLIDNAYRDGQVCQYI 383 >gi|154686891|ref|YP_001422052.1| tRNA-specific 2-thiouridylase MnmA [Bacillus amyloliquefaciens FZB42] gi|166234844|sp|A7Z745|MNMA_BACA2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|154352742|gb|ABS74821.1| TrmU [Bacillus amyloliquefaciens FZB42] Length = 371 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 142/383 (37%), Positives = 199/383 (51%), Gaps = 22/383 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P+D RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVIRVCNQIGIPYYAVNFEKQYWEKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY R G M R +D +DQ+YFL Q+QL + FP+G Sbjct: 118 LSLGADYLATGHYARVDRSAGT-----VRMLRGLDENKDQTYFLNQLNQEQLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 D++K VR++A+E L A K DS ICF+ + + + + A GD++ ++G++ Sbjct: 173 DLQKSRVREIAKEAELATAAKKDSTGICFIGERNFKTFLSQYLP--AQPGDMMTMDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 GRH+G++ YTIGQR GLG+ GEP F V D + + V L +I ++ Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNVS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFY 368 W GL + C K R Q+ V V+ DD V F+ V GQA VFY Sbjct: 291 WTRPGLMDG---GEMTCTAKFRYRQEDHKVTVKMTGDDEAEVIFDGQVRAVTPGQAVVFY 347 Query: 369 TSDSNEARVLGGGIISGSKRSDA 391 + LGGG I + Sbjct: 348 DGE----ECLGGGTIDDVYKDGT 366 >gi|328554370|gb|AEB24862.1| tRNA-specific 2-thiouridylase MnmA [Bacillus amyloliquefaciens TA208] Length = 371 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 142/383 (37%), Positives = 199/383 (51%), Gaps = 22/383 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P+D RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVIRVCNQIGIPYYAVNFEKQYWEKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY R D M R +D +DQ+YFL Q+QL + FP+G Sbjct: 118 LSLGADYLATGHYARV-----DRSGDTVRMLRGLDENKDQTYFLNQLNQEQLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 D++K VR++A+E L A K DS ICF+ + + + + A GD++ ++G++ Sbjct: 173 DLQKSRVREIAKEAELATAAKKDSTGICFIGERNFKTFLSQYLP--AQPGDMMTMDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 GRH+G++ YTIGQR GLG+ GEP F V D + + V L +I I+ Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368 W GL + C K R Q+ V V+ D + F+K V GQA VFY Sbjct: 291 WTRPGLMDG---GEMTCTAKFRYRQEDHKVTVKMTGADEAEIIFDKQVRAVTPGQAVVFY 347 Query: 369 TSDSNEARVLGGGIISGSKRSDA 391 + LGGG I + Sbjct: 348 DGE----ECLGGGTIDDVYKDGT 366 >gi|82751221|ref|YP_416962.1| 5-methylaminomethyl-2-thiouridylate- methyltransferase tRNA [Staphylococcus aureus RF122] gi|123547857|sp|Q2YT57|MNMA_STAAB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|82656752|emb|CAI81181.1| 5-methylaminomethyl-2-thiouridylate-methyltransferase tRNA [Staphylococcus aureus RF122] Length = 372 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 136/379 (35%), Positives = 205/379 (54%), Gaps = 20/379 (5%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + KD+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D D Sbjct: 2 SNKDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L L Sbjct: 59 IEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R + M R +D +DQ+YFL +QQQL + FP+GD++ Sbjct: 119 GADYVATGHYARIHRH----EDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIE 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A E GL A K DS ICF+ + + + + A GD++ L+G+ +G+H Sbjct: 175 KSEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKH 232 Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +G++ YTIGQR GLG+ G+P FVV + + + V ++L + + +++ Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFVN 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371 ++ + GF+C K R Q VFV+R +D + V F + + GQA VFY D Sbjct: 293 PE--DNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITPGQAVVFYQGD 350 Query: 372 SNEARVLGGGIISGSKRSD 390 LGG II +++ Sbjct: 351 V----CLGGAIIDDVFKNE 365 >gi|15902166|ref|NP_357716.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae R6] gi|15457661|gb|AAK98926.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae R6] Length = 391 Score = 501 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 140/393 (35%), Positives = 198/393 (50%), Gaps = 26/393 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L + N K RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A + Sbjct: 17 LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 72 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D D V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 73 DYKDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 132 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FP Sbjct: 133 YAMTLGADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 188 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG +KK VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ Sbjct: 189 LGHLKKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGR 246 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 +G H G++ YTIGQR GLG+ P FVV D + + + VG +SL + Sbjct: 247 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSL 306 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 ++++ + E +C K R Q V V D V F + + + GQ Sbjct: 307 EASQVHFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQ 362 Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396 A VFY + LGGG+I + R V + + Sbjct: 363 AVVFYDGE----ECLGGGLIDNAYRDGQVCQYI 391 >gi|15924611|ref|NP_372145.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus Mu50] gi|156979939|ref|YP_001442198.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus Mu3] gi|255006407|ref|ZP_05145008.2| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus Mu50-omega] gi|24638325|sp|Q931Q6|MNMA_STAAM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|166235085|sp|A7X333|MNMA_STAA1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|14247392|dbj|BAB57783.1| tRNA-methyltransferase [Staphylococcus aureus subsp. aureus Mu50] gi|156722074|dbj|BAF78491.1| 5-methylaminomethyl-2-thiouridylate- methyltransf erase [Staphylococcus aureus subsp. aureus Mu3] Length = 372 Score = 501 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 135/379 (35%), Positives = 204/379 (53%), Gaps = 20/379 (5%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + KD+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D D Sbjct: 2 SNKDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L L Sbjct: 59 IEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R + M R +D +DQ+YFL +QQQL + FP+GD++ Sbjct: 119 GADYVATGHYARIHRH----EDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIE 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A E GL A K DS ICF+ + + + + A GD++ L+G+ +G+H Sbjct: 175 KSEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKH 232 Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +G++ YTIGQR GLG+ G+P FVV + + + V ++L + + +++ Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFVN 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371 ++ + GF+C K R Q VFV+R +D + V F + + GQA VFY D Sbjct: 293 PE--DNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITPGQAVVFYQGD 350 Query: 372 SNEARVLGGGIISGSKRSD 390 LGG I +++ Sbjct: 351 V----CLGGATIDDVFKNE 365 >gi|307702622|ref|ZP_07639574.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus oralis ATCC 35037] gi|307623738|gb|EFO02723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus oralis ATCC 35037] Length = 373 Score = 501 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 137/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYIATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ +G H Sbjct: 176 KPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG +SL + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSQNILYVGQGFYHDSLMSTSLEASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E +C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373 >gi|307705802|ref|ZP_07642645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus mitis SK597] gi|307620634|gb|EFN99727.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus mitis SK597] Length = 373 Score = 501 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 138/391 (35%), Positives = 198/391 (50%), Gaps = 26/391 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + +N K RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSENSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 56 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 57 KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG Sbjct: 117 MTLGADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ + Sbjct: 173 HLEKPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDM 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 G H G++ YTIGQR GLG+ P FVV D + + + VG +SL + Sbjct: 231 GEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEA 290 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 ++++ + E +C K R Q V V D V F + + + GQA Sbjct: 291 SQVHFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAV 346 Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEESL 396 VFY + LGGG+I + R V + + Sbjct: 347 VFYDGE----ECLGGGLIDNAYRDGQVCQYI 373 >gi|307710241|ref|ZP_07646684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus mitis SK564] gi|307619003|gb|EFN98136.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus mitis SK564] Length = 373 Score = 501 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 137/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ +G H Sbjct: 176 KPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG +SL + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E +C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373 >gi|323442826|gb|EGB00451.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus O46] Length = 372 Score = 501 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 137/379 (36%), Positives = 207/379 (54%), Gaps = 20/379 (5%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + KD+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D D Sbjct: 2 SNKDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L L Sbjct: 59 IEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R + +DG M R +D +DQ+YFL +QQQL + FP+GD++ Sbjct: 119 GADYVATGHYARIHRH--EDGNVE--MLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIE 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A E GL A K DS ICF+ + + + + A GD++ L+G+ +G+H Sbjct: 175 KSEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKH 232 Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +G++ YTIGQR GLG+ G+P FVV + + + V ++L + + +++ Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFVN 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371 ++ + GF+C K R Q VFV+R +D + V F + + GQA VFY D Sbjct: 293 PE--DNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITPGQAVVFYQGD 350 Query: 372 SNEARVLGGGIISGSKRSD 390 LGG I +++ Sbjct: 351 V----CLGGATIDDVFKNE 365 >gi|328462804|gb|EGF34672.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus rhamnosus MTCC 5462] Length = 372 Score = 501 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 132/379 (34%), Positives = 188/379 (49%), Gaps = 25/379 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A D D Sbjct: 2 DNSNTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATTDYEDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F Y AG TP P V CN+ +KF L QL Sbjct: 59 AKVASEIGIPYYSINFEKEYWDRVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDYAEQL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY + + D + M R D +DQ+YFL +Q QL FP+G ++ Sbjct: 119 NADYIAMGHYAQVKT----DEQGVVHMLRGADGNKDQTYFLSQLSQDQLKKSMFPIGHLQ 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + A G ++ ++G G H Sbjct: 175 KPEVRKIAEAAGLATAKKKDSTGICFIGERNFKQFLSTYLP--AQPGKMMTVDGVEKGTH 232 Query: 257 NGIINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 +G++ YTIGQR+GLG+ EP FVV D + + + VG +L + +N Sbjct: 233 DGLMYYTIGQRQGLGIGGNSQNSEPWFVVGKDLDKNILYVGQGFDNPALMATSLSASNLN 292 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W +A DG K R Q V + +DDG VDF+ + GQA VFY Sbjct: 293 WTTG----EAPADGTHMTAKFRYRQRDTGVTIHYHDDGTAIVDFDVPVRAITPGQAVVFY 348 Query: 369 TSDSNEARVLGGGIISGSK 387 + LGGG I + Sbjct: 349 DGE----ECLGGGTIDAAY 363 >gi|23099469|ref|NP_692935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methy ltransferase [Oceanobacillus iheyensis HTE831] gi|30173412|sp|Q8CXC7|MNMA_OCEIH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|22777698|dbj|BAC13970.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Oceanobacillus iheyensis HTE831] Length = 371 Score = 501 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 140/380 (36%), Positives = 207/380 (54%), Gaps = 22/380 (5%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 KN KD RVVV MSGGVDSSV A LLK+ GYDV+G+ ++ ++ + G C A +D D Sbjct: 2 KNNKDTRVVVGMSGGVDSSVAALLLKQQGYDVVGIFMKNWDD---TDEFGVCTATEDFDD 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 RVC+ + + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 59 VVRVCNQLEIPYYSVNFEKQYWDKVFTYFLDEYKAGRTPNPDVMCNKEIKFKAFLDHALA 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD LATGHY + R D R M R D +DQ+YFL ++ L + FPLG + Sbjct: 119 LGADYLATGHYAQVRR----DKNGRVEMLRGNDENKDQTYFLNQLSEDVLDKVMFPLGHL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K VR +A+E L A+K DS ICF+ + + + + A G++ L+G + G Sbjct: 175 PKSEVRKIAKEHELVTAEKKDSTGICFIGERNFKEFLSEYLP--AQPGEMQTLDGIVKGS 232 Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 H+G++ YT+GQR+GLG+ G+P FVV + + + VG + L + + +INW+ Sbjct: 233 HDGLMYYTLGQRQGLGIGGSGDPWFVVGKNLTDNILYVGQGYENDYLYSNALVATDINWI 292 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370 D + D F C K R Q V V ++++ VYV F++ + + GQA VFY Sbjct: 293 ----QPDKISDTFNCTAKFRYRQQDSEVNVTIKSENEVYVAFKEDQRAITPGQAVVFYDG 348 Query: 371 DSNEARVLGGGIISGSKRSD 390 + LGGG I ++D Sbjct: 349 EV----CLGGGTIDTIIKND 364 >gi|15927201|ref|NP_374734.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus N315] gi|49483866|ref|YP_041090.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus MRSA252] gi|57650503|ref|YP_186516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus COL] gi|148268102|ref|YP_001247045.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus JH9] gi|150394170|ref|YP_001316845.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus JH1] gi|151221735|ref|YP_001332557.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus str. Newman] gi|161509848|ref|YP_001575507.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253316605|ref|ZP_04839818.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732278|ref|ZP_04866443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733127|ref|ZP_04867292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|257425746|ref|ZP_05602170.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus 55/2053] gi|257428406|ref|ZP_05604804.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus 65-1322] gi|257431044|ref|ZP_05607423.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp. aureus 68-397] gi|257433730|ref|ZP_05610088.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp. aureus E1410] gi|257436645|ref|ZP_05612689.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus M876] gi|257793696|ref|ZP_05642675.1| tRNA methyl transferase [Staphylococcus aureus A9781] gi|258411005|ref|ZP_05681285.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus A9763] gi|258420193|ref|ZP_05683148.1| tRNA methyl transferase [Staphylococcus aureus A9719] gi|258438195|ref|ZP_05689479.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A9299] gi|258443658|ref|ZP_05691997.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A8115] gi|258446865|ref|ZP_05695019.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A6300] gi|258448779|ref|ZP_05696891.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus A6224] gi|258450551|ref|ZP_05698613.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A5948] gi|258453598|ref|ZP_05701576.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A5937] gi|262048616|ref|ZP_06021499.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase [Staphylococcus aureus D30] gi|269203247|ref|YP_003282516.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus ED98] gi|282893124|ref|ZP_06301358.1| tRNA methyl transferase [Staphylococcus aureus A8117] gi|282904202|ref|ZP_06312090.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus C160] gi|282906028|ref|ZP_06313883.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus Btn1260] gi|282908941|ref|ZP_06316759.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911258|ref|ZP_06319060.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus WBG10049] gi|282914426|ref|ZP_06322212.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus M899] gi|282916890|ref|ZP_06324648.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus D139] gi|282919396|ref|ZP_06327131.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus C427] gi|282920169|ref|ZP_06327894.1| tRNA methyl transferase [Staphylococcus aureus A9765] gi|282924721|ref|ZP_06332389.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus C101] gi|282928255|ref|ZP_06335860.1| tRNA methyl transferase [Staphylococcus aureus A10102] gi|283958382|ref|ZP_06375833.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus A017934/97] gi|284024678|ref|ZP_06379076.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus 132] gi|293503501|ref|ZP_06667348.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus 58-424] gi|293510518|ref|ZP_06669224.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus M809] gi|293531058|ref|ZP_06671740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus M1015] gi|294848651|ref|ZP_06789397.1| tRNA methyl transferase [Staphylococcus aureus A9754] gi|295406743|ref|ZP_06816548.1| tRNA methyl transferase [Staphylococcus aureus A8819] gi|295428198|ref|ZP_06820830.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275907|ref|ZP_06858414.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus MR1] gi|297245675|ref|ZP_06929540.1| tRNA methyl transferase [Staphylococcus aureus A8796] gi|297590835|ref|ZP_06949473.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|304380782|ref|ZP_07363449.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|24638330|sp|Q99TM8|MNMA_STAAN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|56749735|sp|Q6GG82|MNMA_STAAR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71153356|sp|Q5HFE1|MNMA_STAAC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|172048920|sp|A6QHG3|MNMA_STAAE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|189040510|sp|A6U290|MNMA_STAA2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|189040511|sp|A5ITE6|MNMA_STAA9 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|189040512|sp|A8Z4F9|MNMA_STAAT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205829108|sp|Q2FGA5|MNMA_STAA3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205829109|sp|Q2FXV6|MNMA_STAA8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|13701419|dbj|BAB42713.1| (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Staphylococcus aureus subsp. aureus N315] gi|49241995|emb|CAG40692.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MRSA252] gi|57284689|gb|AAW36783.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus COL] gi|147741171|gb|ABQ49469.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus JH9] gi|149946622|gb|ABR52558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus JH1] gi|150374535|dbj|BAF67795.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Staphylococcus aureus subsp. aureus str. Newman] gi|160368657|gb|ABX29628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253724067|gb|EES92796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728883|gb|EES97612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus TCH130] gi|257271440|gb|EEV03586.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus 55/2053] gi|257275247|gb|EEV06734.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus 65-1322] gi|257278247|gb|EEV08889.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp. aureus 68-397] gi|257281823|gb|EEV11960.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp. aureus E1410] gi|257283996|gb|EEV14119.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus M876] gi|257787668|gb|EEV26008.1| tRNA methyl transferase [Staphylococcus aureus A9781] gi|257840155|gb|EEV64619.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus A9763] gi|257843904|gb|EEV68298.1| tRNA methyl transferase [Staphylococcus aureus A9719] gi|257848239|gb|EEV72230.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A9299] gi|257851064|gb|EEV75007.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A8115] gi|257854440|gb|EEV77389.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A6300] gi|257858057|gb|EEV80946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus A6224] gi|257861709|gb|EEV84508.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A5948] gi|257864329|gb|EEV87079.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus A5937] gi|259163263|gb|EEW47822.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase [Staphylococcus aureus D30] gi|262075537|gb|ACY11510.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus ED98] gi|269941107|emb|CBI49493.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus TW20] gi|282313556|gb|EFB43951.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus C101] gi|282317206|gb|EFB47580.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus C427] gi|282319377|gb|EFB49729.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus D139] gi|282321607|gb|EFB51932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus M899] gi|282324953|gb|EFB55263.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus WBG10049] gi|282327205|gb|EFB57500.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus WW2703/97] gi|282331320|gb|EFB60834.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus Btn1260] gi|282590062|gb|EFB95144.1| tRNA methyl transferase [Staphylococcus aureus A10102] gi|282594517|gb|EFB99502.1| tRNA methyl transferase [Staphylococcus aureus A9765] gi|282595820|gb|EFC00784.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus C160] gi|282764442|gb|EFC04568.1| tRNA methyl transferase [Staphylococcus aureus A8117] gi|283470898|emb|CAQ50109.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus ST398] gi|283790531|gb|EFC29348.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus A017934/97] gi|285817303|gb|ADC37790.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus 04-02981] gi|290920326|gb|EFD97392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus M1015] gi|291095167|gb|EFE25432.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus 58-424] gi|291466882|gb|EFF09402.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus M809] gi|294824677|gb|EFG41100.1| tRNA methyl transferase [Staphylococcus aureus A9754] gi|294968490|gb|EFG44514.1| tRNA methyl transferase [Staphylococcus aureus A8819] gi|295128556|gb|EFG58190.1| tRNA methyl transferase [Staphylococcus aureus subsp. aureus EMRSA16] gi|297177326|gb|EFH36578.1| tRNA methyl transferase [Staphylococcus aureus A8796] gi|297575721|gb|EFH94437.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus MN8] gi|302333295|gb|ADL23488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus JKD6159] gi|302751450|gb|ADL65627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304340658|gb|EFM06591.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312437911|gb|ADQ76982.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus TCH60] gi|312830008|emb|CBX34850.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129903|gb|EFT85893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus CGS03] gi|315195521|gb|EFU25908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus CGS00] gi|315198681|gb|EFU29009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus CGS01] gi|320140492|gb|EFW32346.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus MRSA131] gi|320144031|gb|EFW35800.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus MRSA177] gi|323439031|gb|EGA96763.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus O11] gi|329314296|gb|AEB88709.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp. aureus T0131] gi|329727166|gb|EGG63622.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus 21172] gi|329728421|gb|EGG64858.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus 21189] Length = 372 Score = 501 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 135/379 (35%), Positives = 204/379 (53%), Gaps = 20/379 (5%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + KD+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D D Sbjct: 2 SNKDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L L Sbjct: 59 IEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R + M R +D +DQ+YFL +QQQL + FP+GD++ Sbjct: 119 GADYVATGHYARIHRH----EDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIE 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A E GL A K DS ICF+ + + + + A GD++ L+G+ +G+H Sbjct: 175 KSEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKH 232 Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +G++ YTIGQR GLG+ G+P FVV + + + V ++L + + +++ Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFVN 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371 ++ + GF+C K R Q VFV+R +D + V F + + GQA VFY D Sbjct: 293 PE--DNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITPGQAVVFYQGD 350 Query: 372 SNEARVLGGGIISGSKRSD 390 LGG I +++ Sbjct: 351 V----CLGGATIDDVFKNE 365 >gi|227509407|ref|ZP_03939456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227191119|gb|EEI71186.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 374 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 135/390 (34%), Positives = 201/390 (51%), Gaps = 26/390 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 ++ RVVV MSGGVDSSVVA LLK+ GYDVIGV ++ ++ + G C A +D D Sbjct: 2 QDNSQTRVVVGMSGGVDSSVVAYLLKQQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 +V + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L + Sbjct: 59 VAKVANKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPDPDVICNKEIKFKAFLDYALE 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY + + D + R D +DQ+YFL + QL + FP+G++ Sbjct: 119 LGADYIATGHYAQ----LTRDEDGHNHLLRASDGNKDQTYFLSQLSANQLDRVMFPIGNL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K VR++AR+ GL ADK DS ICF+ + + + A G ++ ++G++ G+ Sbjct: 175 VKPEVREIARKAGLATADKKDSVGICFIGEKNFKQFLGHYLP--ATPGKMMTVDGEVKGQ 232 Query: 256 HNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308 H+G++ YTIGQRRGLG+ +P FVV D + + VG E L + +I Sbjct: 233 HDGLMYYTIGQRRGLGIGGDGVDNQPWFVVGKDLKKNILYVGKGYHNELLYADYLEASDI 292 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366 +W+ + F C K R Q V V +DDG V VDF+ + GQA V Sbjct: 293 HWVNNLDR----GQDFHCTAKFRYRQKDTGVTVHLSDDGQKVRVDFDAPVRAITPGQAVV 348 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396 FY + LG II + + + + Sbjct: 349 FYDGE----ECLGSAIIDAAYKQAEELQYV 374 >gi|303260932|ref|ZP_07346881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP14-BS292] gi|303269624|ref|ZP_07355383.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae BS458] gi|301801084|emb|CBW33752.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae INV200] gi|302637769|gb|EFL68255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP14-BS292] gi|302640826|gb|EFL71214.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae BS458] gi|332077431|gb|EGI87892.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae GA41301] Length = 373 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 137/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAR----VVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ +G H Sbjct: 176 KPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG +SL + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E +C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373 >gi|66046419|ref|YP_236260.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. syringae B728a] gi|75501528|sp|Q4ZRK0|MNMA_PSEU2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|63257126|gb|AAY38222.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas syringae pv. syringae B728a] Length = 376 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 126/388 (32%), Positives = 199/388 (51%), Gaps = 26/388 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 N + RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ Sbjct: 6 PSNSEMKRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLA 62 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ VCD I + + ++ + + V F Y AG TP P + CNR +KF L Sbjct: 63 DAQAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYAL 122 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+ Sbjct: 123 MLGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGE 177 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K VR +A + GL A K DS ICF+ + ++ D +++ A G+I G+++G Sbjct: 178 LEKPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIG 235 Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 RH+G++ +TIGQR+GLG+ +P +V+ D ++ +IVG L + Sbjct: 236 RHSGLMYHTIGQRQGLGIGGLKDASDDPWYVLVKDLENNELIVGQGNDHPWLFSRALVSS 295 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 EI W+ + K+R Q P +++ DG F+ + V GQ+ V Sbjct: 296 EIYWVNPIDLSSP----RRLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVV 351 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEE 394 FY + LGGG+I ++ ++ Sbjct: 352 FYDGEI----CLGGGVIEIAEPWTTKDK 375 >gi|49474501|ref|YP_032543.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella quintana str. Toulouse] gi|81646912|sp|Q6FZ46|MNMA_BARQU RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|49240005|emb|CAF26420.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella quintana str. Toulouse] Length = 408 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 228/395 (57%), Positives = 292/395 (73%), Gaps = 5/395 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL P + R+VVAMSGGVDSSVVA LLK++GYDVIG+TLQLY+ A+ R G+CC Sbjct: 3 LNSLDLPGQPDNSRIVVAMSGGVDSSVVAGLLKKEGYDVIGITLQLYDHGAATHRVGACC 62 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRV +T+ + HYV DYE+RFR AVI PFA SYA GETP+PCV CN+TVKF+D Sbjct: 63 AGQDIEDARRVAETLGIPHYVLDYEKRFREAVIDPFAESYAHGETPVPCVACNQTVKFAD 122 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R+LGAD LATGHYIRSR + R + RP D+ERDQSYFLFATTQ+Q+ L Sbjct: 123 LLATARELGADALATGHYIRSRPH-----GAHRALFRPFDVERDQSYFLFATTQEQIDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGD+ K VR++A EMG +ADK DSQDICFV QGKY DV+ ++ G IVH+ Sbjct: 178 RFPLGDLPKAHVREIATEMGFVVADKHDSQDICFVPQGKYSDVITKLRPEAVNPGVIVHI 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +GQ+LG+H+GI+NYT+GQRRG+GVA GE L+VVYLD ++RVIVGPRE LE H+++LR++ Sbjct: 238 DGQVLGKHSGIVNYTVGQRRGIGVATGEALYVVYLDVENARVIVGPREMLETHKLFLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLGD ++ DG + VK+RS++ + + VDF + E VA GQACVFY Sbjct: 298 NWLGDERLDNFPSDGLEMAVKVRSTRPSHLARLHYQEGVFSVDFLECENSVAPGQACVFY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403 + + AR+LGGG ++ S+R+ VE L V+ + Sbjct: 358 DGNGDGARILGGGFVTHSQRAVGVEMMLRRVLCNP 392 >gi|319946006|ref|ZP_08020255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus australis ATCC 700641] gi|319747814|gb|EFW00059.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus australis ATCC 700641] Length = 373 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 136/388 (35%), Positives = 196/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ +G H Sbjct: 176 KPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKEFLGNYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG E+L + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSQNILYVGQGFYHEALMSTSLQASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVTFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGKVCQYI 373 >gi|153826012|ref|ZP_01978679.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae MZO-2] gi|149740232|gb|EDM54379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae MZO-2] Length = 372 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 121/378 (32%), Positives = 192/378 (50%), Gaps = 26/378 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA Sbjct: 8 ANSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 64 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD I + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 65 QAVCDKIGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 124 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY+R + M R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 125 LDADYIAMGHYVRRTF---PQNGEKPQMLRGLDGNKDQSYFLYTLSHEQVARSLFPVGEL 181 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL A K DS ICF+ + K+ D + R A G I G+++G Sbjct: 182 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGE 239 Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307 H G++ +T+GQR+GL + +P +V D + +I L+ H + + Sbjct: 240 HQGLMYHTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQ 299 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACV 366 ++W+ + + +C VK R Q + + +DD + V F++ +V V GQ+ V Sbjct: 300 LHWVD----RTPITEPVRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAV 355 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 356 FYQGEI----CLGGGIIE 369 >gi|317491853|ref|ZP_07950288.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920287|gb|EFV41611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 367 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 123/378 (32%), Positives = 199/378 (52%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDNEE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R R D + R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 120 LGADYIATGHYVRRR-----DIDGTTQLLRGVDTNKDQSYFLYTLSHEQVAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++ L A K DS ICF+ + K+ D + R A G I+ ++G+ +G+ Sbjct: 175 EKPEVRKIAEQLDLATAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIMTVDGEEIGQ 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ +P +VV D ++ ++V SL + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKDGGEDPWYVVEKDLENNVLLVAQGHDHPSLYSQGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366 ++W+ V + F+C VK R Q + V DD + V F++ V GQ+ V Sbjct: 293 LHWVD----RKTVTEPFRCVVKTRYRQPDIACTVTPIDDERIEVRFDEPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGG+I Sbjct: 349 FYIDEV----CLGGGVIE 362 >gi|90579124|ref|ZP_01234934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio angustum S14] gi|90439957|gb|EAS65138.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio angustum S14] Length = 371 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 119/381 (31%), Positives = 195/381 (51%), Gaps = 28/381 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A +D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDNDE---YCSAAEDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 60 QAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY R + + M R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 120 LEADYIAMGHYTRRSFPTAE--GEKPQMLRGVDNNKDQSYFLYTLSHEQIARSLFPVGEL 177 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILG 254 +K VR +A E L A K DS ICF+ + K+ + + + A G IV + G+ +G Sbjct: 178 EKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGKIVTADEGKEIG 235 Query: 255 RHNGIINYTIGQRRGL-------GVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304 H G++ +T+GQR+GL G + +VV D ++ +IVG L+ + + Sbjct: 236 EHQGLMYHTLGQRKGLHIGGQKGGNGHEDAWYVVDKDVKNNLLIVGQGKDHPRLKSNGLI 295 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363 ++++W+ + + C VK R Q +P + DD + V F++ ++ V GQ Sbjct: 296 AKQLHWVD----RQPIRETMACTVKTRYRQQDIPCTIIPVDDETIKVIFDEPQIAVTPGQ 351 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY + LGGGII Sbjct: 352 SAVFYNGEI----CLGGGIIE 368 >gi|262281666|ref|ZP_06059435.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus sp. 2_1_36FAA] gi|262262120|gb|EEY80817.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus sp. 2_1_36FAA] Length = 373 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 134/388 (34%), Positives = 198/388 (51%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQVKR----DQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + + + A G ++ L G+ +G+H Sbjct: 176 KPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ EP FVV D + + + VG ++L + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V D V+F++ + V GQA VFY Sbjct: 294 HFTKEMPEE----FTMECTAKFRYRQPDSKVTVTVKGDKAVVNFDQPQRAVTPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGGG+I + ++ V + + Sbjct: 350 DGD----ECLGGGLIDKAYKNGQVLQYI 373 >gi|331701087|ref|YP_004398046.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus buchneri NRRL B-30929] gi|329128430|gb|AEB72983.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus buchneri NRRL B-30929] Length = 374 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 136/390 (34%), Positives = 200/390 (51%), Gaps = 26/390 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 ++ RVVV MSGGVDSSVVA LLK+ GYDVIGV ++ ++ + G C A +D D Sbjct: 2 QDNSQTRVVVGMSGGVDSSVVAYLLKQQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 +V + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L + Sbjct: 59 VAKVANKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPDPDVICNKEIKFKAFLDYALE 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY + + D + R D +DQ+YFL + QL + FP+G++ Sbjct: 119 LGADYIATGHYAQ----LTRDADGHNHLLRASDGNKDQTYFLSQLSADQLDRVMFPIGNL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K VR +ARE GL ADK DS ICF+ + + + + A G ++ ++G++ G+ Sbjct: 175 VKPDVRKIAREAGLATADKKDSVGICFIGEKNFKNFLGHYLP--ATPGKMMTVDGEVKGQ 232 Query: 256 HNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308 H+G++ YTIGQRRGLG+ +P FVV D + + VG L + +I Sbjct: 233 HDGLMYYTIGQRRGLGIGGDGVDNQPWFVVGKDLKQNILYVGKGYHNPLLYADYLEASDI 292 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366 +W+ + F C K R Q V V +DDG V VDF+ + GQA V Sbjct: 293 HWVNNLDR----GKDFHCTAKFRYRQKDTGVTVHISDDGQSVRVDFDAPVRAITPGQAVV 348 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396 FY D LG II + + + + Sbjct: 349 FYDGD----ECLGSAIIDAAYKQAKELQYV 374 >gi|150391390|ref|YP_001321439.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alkaliphilus metalliredigens QYMF] gi|205811141|sp|A6TUB2|MNMA_ALKMQ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|149951252|gb|ABR49780.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alkaliphilus metalliredigens QYMF] Length = 369 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 133/383 (34%), Positives = 198/383 (51%), Gaps = 25/383 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K+PKD +VV+ MSGGVDSSV A LK GYDVIG+ ++ ++ G C A +D Sbjct: 1 MKKDPKDTKVVIGMSGGVDSSVAALKLKEQGYDVIGIFMKNWDEPD---EYGYCTAAEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RRVC+ I + +Y ++E+ + V F Y G TP P V CN+ +KF L Sbjct: 58 EDVRRVCEQIGIPYYTVNFEKEYWEKVFQYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +LGAD LATGHY + G+ + R +D +DQ+YFL Q QL FP+G Sbjct: 118 LKLGADYLATGHYAQVDYKDGE-----YRLLRGVDSNKDQTYFLNTLGQYQLSKAMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 + K+ VR++A L A K DS ICF+ + + + + + A G++ L+G + Sbjct: 173 HIDKKKVREMALAHDLVTAKKKDSTGICFIGERNFKEFLSQYLP--AQPGEMRDLSGNVK 230 Query: 254 GRHNGIINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 G+H+G++ +T+GQR+ G GEP FVV D ++ + V SL + + + Sbjct: 231 GKHDGLMYHTLGQRKGLGIGGSGSGEPWFVVSKDLKNNILYVVQGEDHPSLYTYGLLATD 290 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACV 366 ++W+ E + F C K R Q V VQ D V F+ + V GQA V Sbjct: 291 LHWVS----EKEIPQTFTCTAKFRYRQPDQNVTVQLTGGDTCKVLFDGPQKAVTPGQAVV 346 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 FY ++ LGGGII + ++ Sbjct: 347 FYNGEA----CLGGGIIDETIKT 365 >gi|254503485|ref|ZP_05115636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Labrenzia alexandrii DFL-11] gi|222439556|gb|EEE46235.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Labrenzia alexandrii DFL-11] Length = 449 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 216/387 (55%), Positives = 270/387 (69%), Gaps = 7/387 (1%) Query: 5 EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64 LNSLDL P+D RVVVAMSGGVDSSVVAA++ +GYDVIGVTLQLY+ A + Sbjct: 55 PLNMLNSLDLPGRPEDTRVVVAMSGGVDSSVVAAMMHAEGYDVIGVTLQLYDHGAAVAKT 114 Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 SCCAG D++DARR + I + HYV DYE RF+ V+ FA SY AGETP+PCV CN+TV Sbjct: 115 KSCCAGVDIHDARRAAEKIGIPHYVLDYESRFKEQVMDRFADSYIAGETPIPCVSCNQTV 174 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 KF+DLL R LGAD LATGHY+RS +R + RP DL+RDQSYFLFATTQ+Q Sbjct: 175 KFTDLLKTARDLGADALATGHYVRSATK-----GNKRALFRPADLDRDQSYFLFATTQEQ 229 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 L +RFPLG M K VR LA E GL +A+K DSQDICFV G Y V++++ A G+ Sbjct: 230 LDFVRFPLGGMPKSQVRTLAEEFGLSVANKPDSQDICFVPNGDYAAVIRKLRPNAAEPGE 289 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 IVH++G++LG HNGII++TIGQRRG+GVA GEPL+VV LD + RVIVGPRE+L I Sbjct: 290 IVHMDGRVLGEHNGIIHFTIGQRRGIGVATGEPLYVVRLDADERRVIVGPREALATRTIL 349 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 LRE+NW+GD ++ D + F K+RS++ P P ++ + +VD E GVA GQA Sbjct: 350 LREMNWIGDQPLDEG--DEIEVFAKVRSTRPPAPAALRILNGKAFVDLANGETGVAPGQA 407 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDA 391 CVF+ SD ARVLGGG I ++R+ Sbjct: 408 CVFFDSDDETARVLGGGWIHKTERTGT 434 >gi|254291552|ref|ZP_04962342.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae AM-19226] gi|150422504|gb|EDN14461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio cholerae AM-19226] Length = 372 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 120/378 (31%), Positives = 191/378 (50%), Gaps = 26/378 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA Sbjct: 8 ANSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 64 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 65 QAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 124 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY+R + M R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 125 LDADYIAMGHYVRRTF---PQNGEKPQMLRGLDGNKDQSYFLYTLSHEQVARSLFPVGEL 181 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL A K DS ICF+ + K+ D + R A G I G+++G Sbjct: 182 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGE 239 Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307 H G++ +T+GQR+GL + +P +V D + +I L+ H + + Sbjct: 240 HQGLMYHTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQ 299 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACV 366 ++W+ + +C VK R Q + + +DD + V F++ +V V GQ+ V Sbjct: 300 LHWVD----RTPITGPVRCSVKTRYRQSDIACTIIPLSDDRIKVMFDEPQVAVTPGQSAV 355 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 356 FYQGEI----CLGGGIIE 369 >gi|306828717|ref|ZP_07461909.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus mitis ATCC 6249] gi|304428895|gb|EFM31983.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus mitis ATCC 6249] Length = 373 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 137/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ +G H Sbjct: 176 KPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG +SL + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E +C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373 >gi|253574914|ref|ZP_04852254.1| tRNA methyl transferase [Paenibacillus sp. oral taxon 786 str. D14] gi|251845960|gb|EES73968.1| tRNA methyl transferase [Paenibacillus sp. oral taxon 786 str. D14] Length = 378 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 134/380 (35%), Positives = 198/380 (52%), Gaps = 24/380 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K + RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A D Sbjct: 2 MAKPNSETRVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDD---TDEFGYCTAEADA 58 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RRVC+ I++ +Y ++E+++ + V F Y G TP P V CNR +KF + L+ Sbjct: 59 EDVRRVCEQIDIPYYTVNFEKQYYDKVFAYFLEEYKRGRTPNPDVMCNREIKFGEFLNKA 118 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R + + + R +D +DQ+YFL A Q+QL FP+G Sbjct: 119 LDLGADYVATGHYARVV-----EENKTYKLLRGVDSNKDQTYFLNALNQEQLSKAMFPIG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQI 252 + K VR +A E GL A K DS +CF+ + + + + A GD++ + G++ Sbjct: 174 HLPKPEVRRIAEEAGLYTAKKKDSTGVCFIGERNFKEFLSNYLP--AQSGDMIDIVTGEV 231 Query: 253 LGRHNGIINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 GRH+G++ YT+GQR+ G GEP FV D + + V SL + Sbjct: 232 KGRHDGLMYYTLGQRQGLGIGGSGTGEPWFVADKDLERNILYVVQGDKHPSLYSTSLIAS 291 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365 +NW+ + +KC K R Q V + + DG V+V F++ + + GQA Sbjct: 292 GVNWIAGA--DKMPEGPYKCTAKFRYRQPDQGVTLTKQPDGTVHVAFDEPQKAITPGQAV 349 Query: 366 VFYTSDSNEARVLGGGIISG 385 VFY + LGGG I Sbjct: 350 VFYQGE----ECLGGGTIEA 365 >gi|146319824|ref|YP_001199536.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis 05ZYH33] gi|253752800|ref|YP_003025941.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus suis SC84] gi|253754625|ref|YP_003027766.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus suis P1/7] gi|253756558|ref|YP_003029698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus suis BM407] gi|205828994|sp|A4VYE7|MNMA_STRSY RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205829102|sp|A4W4N7|MNMA_STRS2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|145690630|gb|ABP91136.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Streptococcus suis 05ZYH33] gi|251817089|emb|CAZ52741.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus suis SC84] gi|251819022|emb|CAZ56869.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus suis BM407] gi|251820871|emb|CAR47637.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus suis P1/7] Length = 374 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 134/391 (34%), Positives = 196/391 (50%), Gaps = 25/391 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSIDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 58 KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG Sbjct: 118 MNLGADYVATGHYAQ----VTRDEDGTVHMLRGADNGKDQTYFLSQLSQEQLQKTMFPLG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR++A GL A K DS ICF+ + + + + + A G ++ ++G+ + Sbjct: 174 HLQKPQVREIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLP--AQPGRMMTVDGRDM 231 Query: 254 GRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 G H G++ YTIGQR GLG+ EP FVV D + + + VG ESL + Sbjct: 232 GEHTGLMYYTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVGQGFYHESLMSTSLQA 291 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 ++++ D E +C K R Q V V+ D V F + + + GQA Sbjct: 292 SQVHFTRDMPEE----FTLECTAKFRYRQPDSQVTVKVKGDKAEVIFAEPQRAITPGQAV 347 Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEESL 396 VFY LGGG+I + + + + Sbjct: 348 VFYDG----QECLGGGMIDMAYKDGEACQYI 374 >gi|319405239|emb|CBI78844.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bartonella sp. AR 15-3] Length = 409 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 230/393 (58%), Positives = 293/393 (74%), Gaps = 5/393 (1%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 RLNSLDL P++ R+VVAMSGGVDSSVVA LLK++GYDV+G+TLQLY+ A+ R G+C Sbjct: 2 RLNSLDLPGYPENSRIVVAMSGGVDSSVVAGLLKKEGYDVVGITLQLYDHGAATHRVGAC 61 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 CAGQD+ DARRV +T+ V HY+ DYEERFR AVI PFA SYA GETP+PCV CN+TVKF+ Sbjct: 62 CAGQDIEDARRVAETLGVPHYILDYEERFREAVINPFAESYAHGETPIPCVACNQTVKFA 121 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL+ +LGAD LATGHYIRSRL+ R + R +D +RDQSYFLFATTQ+Q+ Sbjct: 122 DLLTTAYELGADALATGHYIRSRLH-----GAHRALFRSLDADRDQSYFLFATTQEQIDY 176 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 LRFPLGD+ KE VR++A EMGL +A+K DSQDICFV QGKY DV+ ++ A G IVH Sbjct: 177 LRFPLGDLSKEHVREIAAEMGLVVANKHDSQDICFVPQGKYSDVITKLRPEAANPGVIVH 236 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 ++GQILG H+GI+NYT+GQRRG+GVA GE L+V+YLD ++ VIVGPRE LE +++LR+ Sbjct: 237 IDGQILGEHSGIVNYTVGQRRGIGVATGEALYVIYLDVENACVIVGPREMLETRKLFLRD 296 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 +NWLGD ++ +DG VK+RS+ P + +VD +SE GVA GQACV Sbjct: 297 VNWLGDEQLDNFPLDGIDVAVKVRSTCPPRSARLHYKQGLFFVDLLESESGVAPGQACVL 356 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 Y S+EARVLGGG I+ ++R+ E+ L V+ Sbjct: 357 YNDSSHEARVLGGGFITCAERAADTEKMLKRVL 389 >gi|182683091|ref|YP_001834838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae CGSP14] gi|182628425|gb|ACB89373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae CGSP14] Length = 391 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 139/393 (35%), Positives = 198/393 (50%), Gaps = 26/393 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L + N K RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A + Sbjct: 17 LTMSDNSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATE 72 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D D V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 73 DYKDVVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLD 132 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FP Sbjct: 133 YAMTLGADYVATGHYAR----VVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFP 188 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ Sbjct: 189 LGHLEKPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGR 246 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 +G H G++ YTIGQR GLG+ P FVV D + + + VG +SL + Sbjct: 247 DMGEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSL 306 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 ++++ + E +C K R Q V V D V F + + + GQ Sbjct: 307 EASQVHFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFTEPQRAITPGQ 362 Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396 A VFY + LGGG+I + R V + + Sbjct: 363 AVVFYDGE----ECLGGGLIDNAYRDGQVCQYI 391 >gi|70731250|ref|YP_260991.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas fluorescens Pf-5] gi|123654441|sp|Q4K9U2|MNMA_PSEF5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|68345549|gb|AAY93155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas fluorescens Pf-5] Length = 377 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 124/390 (31%), Positives = 197/390 (50%), Gaps = 26/390 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 + + RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A D+ Sbjct: 6 PSDTQKKRVIVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWEEDDGTE---YCTAMDDLA 62 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ VCD I + + ++ + + V F + Y AG TP P + CNR +KF L Sbjct: 63 DAQAVCDKIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYAM 122 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+ Sbjct: 123 MLGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFPVGE 177 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K VR +A + L A K DS ICF+ + ++ D +K+ A G+I G+++G Sbjct: 178 LEKPEVRAIAEKHDLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGEIKTTEGEVIG 235 Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 RH+G++ +TIGQR+GLG+ EP +V+ D + +IVG L + Sbjct: 236 RHHGLMYHTIGQRQGLGIGGLKDAGEEPWYVLIKDLEHNELIVGQGNDHPWLFSRALLAS 295 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 +I W+ + K+R Q P +++ +G F+ + V GQ+ V Sbjct: 296 DIYWVNPIDLSLP----RRLTAKVRYRQSDQPCTLEKTTNGYRATFDDPQRAVTPGQSVV 351 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396 FY + LGGG+I ++ + + Sbjct: 352 FYDGEI----CLGGGVIEVAEPWSSKDARP 377 >gi|331267205|ref|YP_004326835.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus oralis Uo5] gi|326683877|emb|CBZ01495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus oralis Uo5] Length = 373 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 136/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAR----VARDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ +G H Sbjct: 176 KPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG +SL + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373 >gi|239637572|ref|ZP_04678544.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus warneri L37603] gi|239596790|gb|EEQ79315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus warneri L37603] Length = 372 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 135/378 (35%), Positives = 203/378 (53%), Gaps = 20/378 (5%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 +D RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 2 TNQDTRVVVGMSGGVDSSVTAYLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L +L Sbjct: 59 IAVCNQIGIPYYAVNFEQEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R R + M R +D +DQ+YFL +QQQL + FP+GD+ Sbjct: 119 GADYVATGHYARIRRH----EDGHVEMLRGIDNNKDQTYFLNQLSQQQLSKVMFPIGDID 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ VR++A E L A K DS ICF+ + + + + A GD++ L+G+ +G H Sbjct: 175 KKRVREIAEEQDLATAKKKDSTGICFIGERNFKTFLSQYLP--AQSGDMITLDGKKMGVH 232 Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +G++ YTIGQR GLG+ G+P FVV + + + V ++L + +++++ Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLEDNVLYVEQGFHHDALYSDYLIASDVSFVN 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 + + + GF C K R Q VFVQR D+ + V F++ + GQA VFY + Sbjct: 293 EQDVD--LDKGFYCTAKFRYRQKDTKVFVQREDNEAIRVTFDEPVRAITPGQAVVFYNEE 350 Query: 372 SNEARVLGGGIISGSKRS 389 LGG I ++ Sbjct: 351 V----CLGGATIDDVYKN 364 >gi|205822381|sp|A2RLX1|MNMA_LACLM RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 376 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 138/390 (35%), Positives = 195/390 (50%), Gaps = 26/390 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+P RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 4 KSPAQTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 60 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 V D I V +Y ++E+ + + V F + Y AG TP P V CN+ +KF L + Sbjct: 61 VAAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAME 120 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY + R D M R D +DQ+YFL TQ+QL FPLG + Sbjct: 121 LGADYVATGHYAQVRT----DEDGTVHMLRGADNNKDQTYFLSQLTQEQLKKTMFPLGHL 176 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + GL A K DS ICF+ + + + A G ++ L+G +G Sbjct: 177 EKPEVRRIAEKAGLATAKKKDSTGICFIGEKNFKKFLGEYLP--AQPGKMMTLDGVEMGN 234 Query: 256 HNGIINYTIGQRRGLGVA------MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLR 306 H G++ YTIGQR GLG+ +P FVV D ++ + VG E L + Sbjct: 235 HAGLMYYTIGQRGGLGIGGQHGQLTSDPWFVVGKDLTTNTLYVGQGFHHEHLYSTSLDAS 294 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 ++++ + C K R Q+ V + N D V VDF++ + GQA V Sbjct: 295 DLSFTREM----PETFDLHCTAKFRYRQEDTGVTIHVNGDKVTVDFDEPVRAITPGQAVV 350 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396 FY + LGG +I + + V + Sbjct: 351 FYDGE----ECLGGAMIDVAYKEQKVMQYQ 376 >gi|322386456|ref|ZP_08060085.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus cristatus ATCC 51100] gi|321269542|gb|EFX52473.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus cristatus ATCC 51100] Length = 373 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 132/388 (34%), Positives = 198/388 (51%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQVKR----DQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + + + A G ++ ++G+ +G+H Sbjct: 176 KPEVRAVAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTMDGRDMGQH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ EP FVV D + + + VG + L + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQQGGDNEPWFVVGKDLSQNILYVGQGFYHDHLMSTSLDASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V D V+F++ + V GQA VFY Sbjct: 294 HFTKEMPEE----FTMECTAKFRYRQPDSKVTVTVKGDKAIVNFDQPQRAVTPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + ++ V + + Sbjct: 350 DGE----ECLGGGLIDRAYKNGQVLQYI 373 >gi|227512195|ref|ZP_03942244.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus buchneri ATCC 11577] gi|227084589|gb|EEI19901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus buchneri ATCC 11577] Length = 374 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 134/390 (34%), Positives = 201/390 (51%), Gaps = 26/390 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 ++ RVVV MSGGVDSSVVA LLK+ GYDVIGV ++ ++ + G C A +D D Sbjct: 2 QDNSQTRVVVGMSGGVDSSVVAYLLKQQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 +V + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L + Sbjct: 59 VAKVANKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPDPDVICNKEIKFKAFLDYALE 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY + + D + R D +DQ+YFL + QL + FP+G++ Sbjct: 119 LGADYIATGHYAQ----LTRDEDGHNHLLRASDGNKDQTYFLSQLSANQLDRVMFPIGNL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K VR++AR+ GL ADK DS ICF+ + + + A G ++ ++G++ G+ Sbjct: 175 VKPEVREIARKAGLATADKKDSVGICFIGEKNFKQFLGHYLP--ATPGKMMTVDGEVKGQ 232 Query: 256 HNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308 H+G++ YTIGQRRGLG+ +P FV+ D + + VG E L + +I Sbjct: 233 HDGLMYYTIGQRRGLGIGGDGVDNQPWFVIGKDLKKNILYVGKGYHNELLYADYLEASDI 292 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366 +W+ + F C K R Q V V +DDG V VDF+ + GQA V Sbjct: 293 HWVNNLDR----GQDFHCTAKFRYRQKDTGVTVHLSDDGQKVRVDFDAPVRAITPGQAVV 348 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396 FY + LG II + + + + Sbjct: 349 FYDGE----ECLGSAIIDAAYKQAEELQYV 374 >gi|315179841|gb|ADT86755.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio furnissii NCTC 11218] Length = 372 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 117/378 (30%), Positives = 192/378 (50%), Gaps = 26/378 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A +D+ DA Sbjct: 7 ANSQKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 63 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 64 QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY+R + + M R +D +DQSYFL+ +Q+ FP+G++ Sbjct: 124 LDADYIAMGHYVRRTF---PEHGEKPQMLRGLDGNKDQSYFLYTLGHEQVARSLFPVGEL 180 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL A K DS ICF+ + K+ D + R A G I G+++G Sbjct: 181 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGE 238 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307 H G++ +T+GQR+GL + +P +V D + +I L+ + + + Sbjct: 239 HQGLMYHTLGQRKGLHIGGMKDGSEDPWYVAEKDLKRNVLIAVQGADHPLLKSNGLIASQ 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366 ++W+ + + +C VK R Q + V +++ + V F++ +V V GQ+ V Sbjct: 299 LHWVD----RLPMTEPMRCTVKTRYRQTDIQCTVTPVDENTIKVMFDEPQVAVTPGQSAV 354 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 355 FYQGEV----CLGGGIIE 368 >gi|161503672|ref|YP_001570784.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160865019|gb|ABX21642.1| hypothetical protein SARI_01756 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 383 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 126/394 (31%), Positives = 201/394 (51%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 MV A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MVEYAALKFNVASIPMSESPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + C Sbjct: 61 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L LGAD +ATGHY+R D + + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRV-----DINGKSRLLRGLDGNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R Sbjct: 173 LGHEQIAQSLFPVGELEKPQVRKIAEDLGLITAKKKDSTGICFIGERKFRDFLGRYLP-- 230 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP 294 A G I+ ++G +G H G++ +T+GQR+GLG+ +P +VV D ++ +IV Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQ 290 Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350 L + ++++W+ + C VK R Q +P + +DD + V Sbjct: 291 GHEHPRLMSSGLIAQQLHWVD----REPFTGTLSCTVKTRYRQTDIPCTINALDDDRIEV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY+ + LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFYSGEV----CLGGGIIE 376 >gi|262402513|ref|ZP_06079074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio sp. RC586] gi|262351295|gb|EEZ00428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio sp. RC586] Length = 371 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 120/378 (31%), Positives = 191/378 (50%), Gaps = 26/378 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA Sbjct: 7 ANSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 63 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 64 QAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY+R + M R +D +DQSYFL+ + +Q+ FP+GD+ Sbjct: 124 LDADYIAMGHYVRRTF---PQNGEKPQMLRGLDNNKDQSYFLYTLSHEQVTRSLFPVGDL 180 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL A K DS ICF+ + K+ D + R A G I G+++G Sbjct: 181 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGE 238 Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307 H G++ +T+GQR+GL + +P +V D + +I L+ H + + Sbjct: 239 HQGLMYHTLGQRKGLHIGGMKESNEQPWYVADKDLKRNVLIAVQGADHPLLKSHGLVAAQ 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACV 366 ++W+ + + +C VK R Q + + ++D + V F+ +V V GQ+ V Sbjct: 299 LHWVD----RTPITEPLRCSVKTRYRQSDIACTIIPLSNDRIKVMFDDPQVAVTPGQSAV 354 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 355 FYQGEI----CLGGGIIE 368 >gi|223933686|ref|ZP_03625662.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus suis 89/1591] gi|223897639|gb|EEF64024.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus suis 89/1591] Length = 419 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 134/391 (34%), Positives = 196/391 (50%), Gaps = 25/391 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 46 MSIDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 102 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 103 KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 162 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG Sbjct: 163 MNLGADYVATGHYAQ----VSRDEDGTVHMLRGADNGKDQTYFLSQLSQEQLQKTMFPLG 218 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR++A GL A K DS ICF+ + + + + + A G ++ ++G+ + Sbjct: 219 HLQKPQVREIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLP--AQPGRMMTVDGRDM 276 Query: 254 GRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 G H G++ YTIGQR GLG+ EP FVV D + + + VG ESL + Sbjct: 277 GEHTGLMYYTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVGQGFYHESLMSTSLQA 336 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 ++++ D E +C K R Q V V+ D V F + + + GQA Sbjct: 337 SQVHFTRDMPEEFK----LECTAKFRYRQPDSQVTVKVKGDKAEVIFAEPQQAITPGQAV 392 Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEESL 396 VFY LGGG+I + + + + Sbjct: 393 VFYDG----QECLGGGMIDMAYKDGEACQYI 419 >gi|289625417|ref|ZP_06458371.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649300|ref|ZP_06480643.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. aesculi str. 2250] gi|330866846|gb|EGH01555.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 366 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 126/382 (32%), Positives = 199/382 (52%), Gaps = 26/382 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VC Sbjct: 2 KRVIVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + + ++ + + V F Y AG TP P + CNR +KF L LGAD+ Sbjct: 59 DKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K V Sbjct: 119 IATGHYVRRR-----DTDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH+G++ Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLM 231 Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +TIGQR+GLG+ +P +V+ D +++ +IVG L + EI W+ Sbjct: 232 YHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 K K+R Q P +++ DG F+ + V GQ+ VFY + Sbjct: 292 PIDLSSP----RKLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI 347 Query: 373 NEARVLGGGIISGSKRSDAVEE 394 LGGG+I ++ + ++ Sbjct: 348 ----CLGGGVIEIAEPWTSKDK 365 >gi|261346011|ref|ZP_05973655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Providencia rustigianii DSM 4541] gi|282565896|gb|EFB71431.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Providencia rustigianii DSM 4541] Length = 373 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 124/379 (32%), Positives = 199/379 (52%), Gaps = 28/379 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + ++V+V MSGGVDSSV A LL++ GY V+G+ ++ + + C A D+ DA Sbjct: 9 DNSQIKVIVGMSGGVDSSVSAYLLQQQGYQVVGLFMKNWEEDDDEE---YCSAATDLADA 65 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 66 QAVCDKLGIELRTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 125 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R R D + + R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 126 LGADYIATGHYVRRR-----DVNGKSQLLRGLDNNKDQSYFLYTLSHEQIAKSLFPVGEL 180 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E+GL A K DS ICF+ + K+ D + R A G IV ++G+ +G+ Sbjct: 181 EKPEVRRIAEEIGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVTVDGETIGQ 238 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ EP +VV D +++IV L + ++ Sbjct: 239 HEGLMYHTLGQRKGLGIGGTKEGSEEPWYVVDKDVEKNQLIVAQGHEHPRLMSVGLIAQQ 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366 ++W+ + + +C VK R Q +P + + D + V F+ V GQ+ V Sbjct: 299 LDWVD----RQVLTEPLRCVVKTRYRQADIPCTITPLSADKIQVTFDYPVAAVTPGQSAV 354 Query: 367 FYTSDSNEARVLGGGIISG 385 FY + LGGG+I Sbjct: 355 FYIDEV----CLGGGVIEA 369 >gi|301301190|ref|ZP_07207346.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus salivarius ACS-116-V-Col5a] gi|300214575|gb|ADJ78991.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus salivarius CECT 5713] gi|300851189|gb|EFK78917.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus salivarius ACS-116-V-Col5a] Length = 375 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 132/390 (33%), Positives = 201/390 (51%), Gaps = 25/390 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+ +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + S G C +D D Sbjct: 2 KDKSQIRVVVGMSGGVDSSVSAYLLKQQGYDVVGVFMKNWDDKNDS---GVCTVTEDYQD 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 +V I + +Y ++E+ + + V F Y G TP P + CN+ VKF L Sbjct: 59 VAKVASQIGIPYYSVNFEKEYWDRVFTYFLDEYKNGRTPNPDIMCNKEVKFKAFLDYAMS 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 + AD +A GHY + R D R + R D +DQ+YFL +Q+QL + FP+G + Sbjct: 119 IDADYIAMGHYAQLRR----DEDGRVHLLRGADDNKDQTYFLSQLSQEQLQKVMFPIGHL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL A K DS ICF+ + + + A G++V L+G++ G Sbjct: 175 QKSEVRRIAEEAGLATAKKKDSTGICFIGERNFSKFLGEFLP--AQPGEMVTLDGEVKGN 232 Query: 256 HNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308 H G++NYTIGQR+GLG+ EP FV+ D ++ ++VG E L + + ++ Sbjct: 233 HFGLMNYTIGQRKGLGIGGDGKSNEPWFVIGKDLKTNTLLVGQGYHNEHLYANSLDASKL 292 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366 +++ D D F C K R Q V V+ N+D V V F++ + GQ V Sbjct: 293 SFVDDISDRG---DEFHCTAKFRYRQKDTGVTVKFNEDRTKVEVIFDEPVRAITPGQEVV 349 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396 FY + LG G I + + + + + Sbjct: 350 FYDGE----ECLGSGTIDHAYKESKLLQYV 375 >gi|146307422|ref|YP_001187887.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas mendocina ymp] gi|205816890|sp|A4XUY9|MNMA_PSEMY RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|145575623|gb|ABP85155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas mendocina ymp] Length = 370 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 125/380 (32%), Positives = 197/380 (51%), Gaps = 26/380 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 + P RV+V MSGGVDSSV A LL GY V G+ ++ ++ ++ C A D+ D Sbjct: 2 QAPSTQRVIVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWDEDDGTE---YCTAMDDLAD 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ VCD I + + ++ + + V F + Y AG TP P + CNR +KF L Sbjct: 59 AQAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALS 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G++ Sbjct: 119 LGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFPVGEL 173 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + L A K DS ICF+ + ++ D +K+ A GDI GQ++GR Sbjct: 174 EKPQVRAIAEKYELATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGDIETTEGQVIGR 231 Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H+G++ +TIGQR+GLG+ +P +V+ D + +IVG L + + Sbjct: 232 HHGLMYHTIGQRQGLGIGGLKDASDDPWYVLRKDLTRNVLIVGQGNEHPWLFSRALLASD 291 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 I W+ + K+R Q +++ ++G F++ + V GQ+ VF Sbjct: 292 IYWVNPVDLSTP----RRLTAKVRYRQSDQACTLEKTENGYRAVFDEPQRAVTPGQSVVF 347 Query: 368 YTSDSNEARVLGGGIISGSK 387 Y + LGGG+I ++ Sbjct: 348 YDGEV----CLGGGVIETAQ 363 >gi|324991889|gb|EGC23812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis SK405] gi|324996221|gb|EGC28131.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis SK678] gi|327458514|gb|EGF04864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis SK1] gi|327471584|gb|EGF17027.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis SK408] gi|327490314|gb|EGF22101.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis SK1058] Length = 373 Score = 501 bits (1290), Expect = e-139, Method: Composition-based stats. Identities = 133/388 (34%), Positives = 198/388 (51%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQVKR----DKDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + + + A G ++ + G+ +G+H Sbjct: 176 KPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTMEGRDMGQH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ EP FVV D + + + VG ++L + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V D V+F++ + V GQA VFY Sbjct: 294 HFTKEMPEE----FTMECTAKFRYRQPDSKVTVTVKGDKAVVNFDQPQRAVTPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGGG+I + ++ V + + Sbjct: 350 DGD----ECLGGGLIDRAYKNGQVLQYI 373 >gi|167034615|ref|YP_001669846.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas putida GB-1] gi|189040506|sp|B0KMQ6|MNMA_PSEPG RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|166861103|gb|ABY99510.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas putida GB-1] Length = 374 Score = 500 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 125/382 (32%), Positives = 196/382 (51%), Gaps = 26/382 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+P RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ D Sbjct: 7 KDPAKTRVIVGMSGGVDSSVSALLLIEQGYQVEGLFMKNWEEDDGTE---YCTAREDLAD 63 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ VCD I + + ++ + + V F Y AG TP P + CNR +KF L Sbjct: 64 AQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALS 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD++ATGHY+R R D + + +D +DQSYFL A +++ FP+G++ Sbjct: 124 LGADLIATGHYVRRR-----DTGDLTELLKGLDPNKDQSYFLHAVGGKEIARTLFPVGEL 178 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + GL A K DS ICF+ + ++ D +K+ A GDI G+++GR Sbjct: 179 EKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGDIETTEGEVIGR 236 Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H+G++ +TIGQR+GLG+ EP +V++ D + ++VG L + E Sbjct: 237 HHGLMYHTIGQRQGLGIGGLKDAGDEPWYVLHKDLTRNVLVVGQGNEHPWLFSRALLASE 296 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 I W+ + K+R Q ++ + G F++ + V GQ+ VF Sbjct: 297 IFWVNPIDLSSP----RQLTAKVRYRQSDQQCTLELTETGYRAVFDEPQRAVTPGQSVVF 352 Query: 368 YTSDSNEARVLGGGIISGSKRS 389 Y + LGGG+I ++ Sbjct: 353 YDGEV----CLGGGVIEAAEPW 370 >gi|330940375|gb|EGH43479.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. pisi str. 1704B] Length = 366 Score = 500 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 125/382 (32%), Positives = 199/382 (52%), Gaps = 26/382 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VC Sbjct: 2 KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + + ++ + + V F Y AG TP P + CNR +KF L LGAD+ Sbjct: 59 DKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K V Sbjct: 119 IATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH+G++ Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLM 231 Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +TIGQR+GLG+ +P +V+ D +++ +IVG L + EI W+ Sbjct: 232 YHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + K+R Q P +++ DG F+ + V GQ+ VFY + Sbjct: 292 PIDLSSPP----RLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI 347 Query: 373 NEARVLGGGIISGSKRSDAVEE 394 LGGG+I ++ + ++ Sbjct: 348 ----CLGGGVIEIAEPWTSKDK 365 >gi|325689331|gb|EGD31337.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis SK115] Length = 373 Score = 500 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 134/388 (34%), Positives = 198/388 (51%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWERVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQVKR----DQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + + + A G ++ L G+ +G+H Sbjct: 176 KPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ EP FVV D + + + VG ++L + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E + +C K R Q V V D V+F++ + V GQA VFY Sbjct: 294 HFTKEMPEEFTI----ECTAKFRYRQPDSKVTVTVKGDKAVVNFDQPQRAVTPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGGG+I + ++ V + + Sbjct: 350 DGD----ECLGGGLIDRAYKNGQVLQYI 373 >gi|289168790|ref|YP_003447059.1| tRNA methyl transferase [Streptococcus mitis B6] gi|288908357|emb|CBJ23199.1| tRNA methyl transferase [Streptococcus mitis B6] Length = 373 Score = 500 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 137/388 (35%), Positives = 196/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R DDG M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYARVAR--DDDGTVH--MLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA + GL A K DS ICF+ + + + + A G ++ ++G+ +G H Sbjct: 176 KPEVRKLAEKAGLATAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG +SL + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E +C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373 >gi|324989555|gb|EGC21501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis SK353] Length = 373 Score = 500 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 134/388 (34%), Positives = 198/388 (51%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQVKR----DQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + + + A G ++ L G+ +G+H Sbjct: 176 KPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ EP FVV D + + + VG ++L + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V D V+F+K + + GQA VFY Sbjct: 294 HFTKEMPEE----FTMECTAKFRYRQPDSKVTVTVKGDKAVVNFDKPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGGG+I + ++ V + + Sbjct: 350 DGD----ECLGGGLIDRAYKNGQVLQYI 373 >gi|149005874|ref|ZP_01829603.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP18-BS74] gi|225855906|ref|YP_002737417.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae P1031] gi|237649790|ref|ZP_04524042.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae CCRI 1974] gi|237821488|ref|ZP_04597333.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae CCRI 1974M2] gi|307126353|ref|YP_003878384.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae 670-6B] gi|254811467|sp|C1CI29|MNMA_STRZP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|147762230|gb|EDK69191.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP18-BS74] gi|225725914|gb|ACO21766.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae P1031] gi|306483415|gb|ADM90284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae 670-6B] Length = 373 Score = 500 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 136/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ +G H Sbjct: 176 KPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG +SL + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373 >gi|309799040|ref|ZP_07693293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus infantis SK1302] gi|308117275|gb|EFO54698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus infantis SK1302] Length = 373 Score = 500 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 137/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAR----VARDEAGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ +G H Sbjct: 176 KPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKEFLSNYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG +SL + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E +C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGKVCQYI 373 >gi|330810455|ref|YP_004354917.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378563|gb|AEA69913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 374 Score = 500 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 124/383 (32%), Positives = 196/383 (51%), Gaps = 26/383 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 + RV+V MSGGVDSSV A LL GY+V G+ ++ + ++ C A D+ Sbjct: 6 PSDTSKKRVIVGMSGGVDSSVSALLLIEQGYEVEGLFMKNWEEDDGTE---YCTAMDDLA 62 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ VCD I + + ++ + + V F + Y AG TP P + CNR +KF L Sbjct: 63 DAQAVCDKIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYAM 122 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+ Sbjct: 123 MLGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFPVGE 177 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K VR +A + L A K DS ICF+ + ++ D +K+ A G+I G+++G Sbjct: 178 LEKPEVRAIAEKHQLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGEIKTTEGEVIG 235 Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 RH+G++ +TIGQR+GLG+ EP +V+ D + +IVG L + Sbjct: 236 RHHGLMYHTIGQRQGLGIGGLKDAGEEPWYVLVKDLEHNELIVGQGNDHPWLFSRALLAS 295 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 +I W+ + + + K+R Q P +++ G F+ + V GQ+ V Sbjct: 296 DIYWVNPID----LGEPRRLTAKVRYRQSDQPCTLEKTATGYRATFDDPQRAVTPGQSVV 351 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 FY + LGGG+I ++ Sbjct: 352 FYDGEI----CLGGGVIEVAEPW 370 >gi|293396528|ref|ZP_06640804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Serratia odorifera DSM 4582] gi|291420792|gb|EFE94045.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Serratia odorifera DSM 4582] Length = 370 Score = 500 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 124/378 (32%), Positives = 198/378 (52%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVTAYLLQQQGYQVAGLFMKNWEEDDDEE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + DGK R + R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 120 LGADFIATGHYVRRQDV---DGKNR--LLRGVDGNKDQSYFLYTLSHEQVAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++ L A K DS ICF+ + K+ D + R A G IV ++GQ +G Sbjct: 175 EKPQVRRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVTVDGQTIGE 232 Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ +P +VV D +++++V L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGMKDSSEDPWYVVDKDVANNQLVVAQGHDHPRLMSVGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366 ++W+ + +C VK R Q + V D + + V F++ V GQ+ V Sbjct: 293 LHWVD----RQPLTAPLRCTVKTRYRQQDLACTVTPIDAERIEVRFDEPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 349 FYQGEI----CLGGGIIE 362 >gi|92116313|ref|YP_576042.1| tRNA-specific 2-thiouridylase MnmA [Nitrobacter hamburgensis X14] gi|122418585|sp|Q1QQB5|MNMA_NITHX RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|91799207|gb|ABE61582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrobacter hamburgensis X14] Length = 400 Score = 500 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 210/385 (54%), Positives = 277/385 (71%), Gaps = 4/385 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSL+L+ P+D RVVVAMSGGVDSSV AALLK +GYDV+G+TLQLY+ A+ RKG+CC Sbjct: 2 LNSLELEGRPQDTRVVVAMSGGVDSSVTAALLKSEGYDVVGITLQLYDHGAATHRKGACC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V + + + HYV DYE RFR VI FA SYA+GETP+PC++CNR VKF D Sbjct: 62 AGQDIHDARNVAERLGIPHYVLDYENRFRETVIENFADSYASGETPVPCIECNRLVKFRD 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R+LGA LATGHY+ S G R + D +RDQSYFLFATT++QL L Sbjct: 122 LLATARELGAAALATGHYVASHRMAG----GSRALLCAADADRDQSYFLFATTREQLDFL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K R+LAR GL +ADK DSQDICFV G+Y D++ ++ + GDIV L Sbjct: 178 RFPLGDMTKPQTRELARSFGLSVADKHDSQDICFVPTGRYTDIISQLKPNAMVSGDIVDL 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G ++G H+GI+++T+GQRRGLG+A G PL+V+ LD + RV+VGPRE+L++HRI LR++ Sbjct: 238 DGHVIGHHDGIVHFTVGQRRGLGIASGAPLYVLSLDAANRRVVVGPREALKMHRIILRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GDG + AV G + FV++RS++ P P +++ D ++ E GV+ GQACVFY Sbjct: 298 NWIGDGALDRAVGAGLELFVRVRSTRKPQPAWLRAIDGRYEIELVAGEEGVSPGQACVFY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVE 393 +ARVLGGG I+ + A E Sbjct: 358 DGLEGQARVLGGGFIARAMARRANE 382 >gi|298487541|ref|ZP_07005583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157925|gb|EFH99003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 376 Score = 500 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 127/388 (32%), Positives = 201/388 (51%), Gaps = 26/388 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 N + RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ Sbjct: 6 PSNSEMKRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLA 62 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ VCD I + + ++ + + V F Y AG TP P + CNR +KF L Sbjct: 63 DAQAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYAL 122 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+ Sbjct: 123 MLGADLIATGHYVRRR-----DTDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGE 177 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K VR +A + GL A K DS ICF+ + ++ D +++ A G+I G+++G Sbjct: 178 LEKPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIG 235 Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 RH+G++ +TIGQR+GLG+ +P +V+ D +++ +IVG L + Sbjct: 236 RHSGLMYHTIGQRQGLGIGGLKDASDDPWYVLIKDLDNNELIVGQGNDHPWLFSRALVST 295 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 EI W+ K K+R Q P +++ DG F+ + V GQ+ V Sbjct: 296 EIYWVNPIDLSSP----RKLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVV 351 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEE 394 FY + LGGG+I ++ + ++ Sbjct: 352 FYDGEI----CLGGGVIEIAEPWTSKDK 375 >gi|89073381|ref|ZP_01159905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Photobacterium sp. SKA34] gi|89050868|gb|EAR56342.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Photobacterium sp. SKA34] Length = 371 Score = 500 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 120/381 (31%), Positives = 195/381 (51%), Gaps = 28/381 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A +D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDNDE---YCSAAEDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 60 QAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY R + + M R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 120 LEADYIAMGHYTRRSFPTAE--GDKPQMLRGVDNNKDQSYFLYTLSHEQIARSLFPVGEL 177 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILG 254 +K VR +A E L A K DS ICF+ + K+ + + + A G IV + G+ +G Sbjct: 178 EKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGKIVTADEGKEIG 235 Query: 255 RHNGIINYTIGQRRGL-------GVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304 H G++ +T+GQR+GL G + +VV D S+ +IVG L+ + + Sbjct: 236 EHQGLMYHTLGQRKGLLIGGQKGGNGHEDAWYVVDKDVKSNLLIVGQGKDHPRLKSNGLI 295 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363 ++++W+ + + C VK R Q +P + DD + V F++ ++ V GQ Sbjct: 296 AKQLHWVA----RKPIRETMACTVKTRYRQQDIPCTIIPVDDETIKVIFDEPQIAVTPGQ 351 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY + LGGGII Sbjct: 352 SAVFYNGEI----CLGGGIIE 368 >gi|228993134|ref|ZP_04153056.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus pseudomycoides DSM 12442] gi|228999183|ref|ZP_04158765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus mycoides Rock3-17] gi|229006731|ref|ZP_04164365.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus mycoides Rock1-4] gi|228754592|gb|EEM04003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus mycoides Rock1-4] gi|228760800|gb|EEM09764.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus mycoides Rock3-17] gi|228766593|gb|EEM15234.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus pseudomycoides DSM 12442] Length = 376 Score = 500 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 140/388 (36%), Positives = 203/388 (52%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 6 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYIDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 178 ELKKPQIREMAKEAGLATATKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + I Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNIG 295 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + E FKC K R Q+ V VQ +D+ V + ++ + GQA VFY Sbjct: 296 WVSNRAKE----KEFKCTAKFRYRQEDNKVTVQIVDDNTVRILCDEPIRAITPGQAVVFY 351 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I RS + L Sbjct: 352 DGD----ECLGGATIDEVYRSGKKLDYL 375 >gi|71735842|ref|YP_275272.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. phaseolicola 1448A] gi|123635957|sp|Q48H61|MNMA_PSE14 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71556395|gb|AAZ35606.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas syringae pv. phaseolicola 1448A] Length = 376 Score = 500 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 127/388 (32%), Positives = 201/388 (51%), Gaps = 26/388 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 N + RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ Sbjct: 6 PSNSEMKRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLA 62 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ VCD I + + ++ + + V F Y AG TP P + CNR +KF L Sbjct: 63 DAQAVCDKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYAL 122 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+ Sbjct: 123 MLGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGE 177 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K VR +A + GL A K DS ICF+ + ++ D +++ A G+I G+++G Sbjct: 178 LEKPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIG 235 Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 RH+G++ +TIGQR+GLG+ +P +V+ D +++ +IVG L + Sbjct: 236 RHSGLMYHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSS 295 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 EI W+ K K+R Q P +++ DG F+ + V GQ+ V Sbjct: 296 EIYWVNPIDLSSP----RKLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVV 351 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEE 394 FY + LGGG+I ++ + ++ Sbjct: 352 FYDGEI----CLGGGVIEIAEPWTSKDK 375 >gi|148987860|ref|ZP_01819323.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP6-BS73] gi|148992708|ref|ZP_01822351.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP9-BS68] gi|149017799|ref|ZP_01834258.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP23-BS72] gi|168489391|ref|ZP_02713590.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP195] gi|168493828|ref|ZP_02717971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae CDC3059-06] gi|147926324|gb|EDK77397.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP6-BS73] gi|147928434|gb|EDK79449.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP9-BS68] gi|147931363|gb|EDK82341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP23-BS72] gi|183572139|gb|EDT92667.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP195] gi|183576137|gb|EDT96665.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae CDC3059-06] gi|301793411|emb|CBW35778.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae INV104] gi|332075800|gb|EGI86267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae GA17570] gi|332076573|gb|EGI87035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae GA17545] Length = 373 Score = 500 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 136/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ +G H Sbjct: 176 KPEVRRLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG +SL + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373 >gi|307711099|ref|ZP_07647521.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus mitis SK321] gi|307617061|gb|EFN96239.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus mitis SK321] Length = 373 Score = 500 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 136/388 (35%), Positives = 193/388 (49%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y G TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYREGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS ICF+ + + + A G ++ ++G+ +G H Sbjct: 176 KPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKTFLSNYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG +SL + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E +C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373 >gi|260768141|ref|ZP_05877075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio furnissii CIP 102972] gi|260616171|gb|EEX41356.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio furnissii CIP 102972] Length = 372 Score = 500 bits (1289), Expect = e-139, Method: Composition-based stats. Identities = 117/378 (30%), Positives = 192/378 (50%), Gaps = 26/378 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A +D+ DA Sbjct: 7 ANSQKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 63 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 64 QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY+R + + M R +D +DQSYFL+ +Q+ FP+G++ Sbjct: 124 LDADYIAMGHYVRRTF---PEHGEKPQMLRGLDGNKDQSYFLYTLGHEQVARSLFPVGEL 180 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL A K DS ICF+ + K+ D + R A G I G+++G Sbjct: 181 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGE 238 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307 H G++ +T+GQR+GL + +P +V D + +I L+ + + + Sbjct: 239 HQGLMYHTLGQRKGLHIGGMKDGSEDPWYVAEKDLKRNVLIAVQGADHPLLKSNGLIASQ 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366 ++W+ + + +C VK R Q + V +++ + V F++ +V V GQ+ V Sbjct: 299 LHWVD----RMPMTEPMRCTVKTRYRQTDIQCTVTPVDENTIKVMFDEPQVAVTPGQSAV 354 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 355 FYQGEV----CLGGGIIE 368 >gi|325686453|gb|EGD28482.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis SK72] Length = 373 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 133/388 (34%), Positives = 198/388 (51%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQVKR----DQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + + + A G ++ L G+ +G+H Sbjct: 176 KPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLP--AQPGRMMTLEGRDMGQH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ EP FVV D + + + VG ++L + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V D V+F++ + + GQA VFY Sbjct: 294 HFTKEMPEE----FTMECTAKFRYRQPDSKVTVTVKGDKAVVNFDQPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGGG+I + ++ V + + Sbjct: 350 DGD----ECLGGGLIDRAYKNGQVLQYI 373 >gi|229086959|ref|ZP_04219116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Rock3-44] gi|228696335|gb|EEL49163.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Rock3-44] Length = 376 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 139/388 (35%), Positives = 204/388 (52%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 6 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYIDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + + Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 295 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + E GFKC K R Q+ V VQ +D+ + + ++ + GQA VFY Sbjct: 296 WVSNRAKE----KGFKCTAKFRYRQEDNKVTVQIVDDNTIRILCDEPIRAITPGQAVVFY 351 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I RS + L Sbjct: 352 DGD----ECLGGATIDEVYRSGKKLDYL 375 >gi|218232235|ref|YP_002369206.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus B4264] gi|218160192|gb|ACK60184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus B4264] Length = 372 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 138/388 (35%), Positives = 204/388 (52%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P++ RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 2 MNKLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 59 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 119 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 174 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 231 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + + Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 291 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + E FKC K R Q+ V VQ +++ V + ++ + GQA VFY Sbjct: 292 WVSNKEKET----EFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 347 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I RS + L Sbjct: 348 DGD----ECLGGATIDEVYRSGKKLDYL 371 >gi|116516757|ref|YP_815643.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae D39] gi|30173410|sp|Q8CWW0|MNMA_STRR6 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|122279467|sp|Q04MV1|MNMA_STRP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|116077333|gb|ABJ55053.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae D39] Length = 373 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 137/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG +K Sbjct: 120 GADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLK 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ +G H Sbjct: 176 KPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG +SL + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373 >gi|238789081|ref|ZP_04632870.1| tRNA-specific 2-thiouridylase mnmA [Yersinia frederiksenii ATCC 33641] gi|238722845|gb|EEQ14496.1| tRNA-specific 2-thiouridylase mnmA [Yersinia frederiksenii ATCC 33641] Length = 373 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 125/378 (33%), Positives = 198/378 (52%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDDEE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + D + + R +D +DQSYFL+ + +QL FP+G++ Sbjct: 120 LGADYIATGHYVRRQ-----DVDGKSRLLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++ L A K DS ICF+ + K+ D + R A G I+ ++GQ +G Sbjct: 175 EKPEVRRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQPMGE 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ +P +V D ++ ++V L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKDGGDDPWYVADKDVANNILVVAQGHEHPRLMSVGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366 ++W+ + V + F+C VK R Q +P V DD V V F++ V GQ+ V Sbjct: 293 LHWVD----REPVTEAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDEPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 349 FYQGEV----CLGGGIIE 362 >gi|329733069|gb|EGG69406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus 21193] Length = 372 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 134/379 (35%), Positives = 204/379 (53%), Gaps = 20/379 (5%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + KD+RVV+ MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D D Sbjct: 2 SNKDIRVVIGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L L Sbjct: 59 IEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R + M R +D +DQ+YFL +QQQL + FP+GD++ Sbjct: 119 GADYVATGHYARIHRH----EDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIE 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A E GL A K DS ICF+ + + + + A GD++ L+G+ +G+H Sbjct: 175 KSEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKH 232 Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +G++ YTIGQR GLG+ G+P FVV + + + V ++L + + +++ Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFVN 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371 ++ + GF+C K R Q VFV+R +D + V F + + GQA VFY D Sbjct: 293 PE--DNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITPGQAVVFYQGD 350 Query: 372 SNEARVLGGGIISGSKRSD 390 LGG I +++ Sbjct: 351 V----CLGGATIDDVFKNE 365 >gi|127512489|ref|YP_001093686.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella loihica PV-4] gi|166235081|sp|A3QD79|MNMA_SHELP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|126637784|gb|ABO23427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella loihica PV-4] Length = 371 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 128/385 (33%), Positives = 197/385 (51%), Gaps = 28/385 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ NP +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A +D+ Sbjct: 4 IEPNPNGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDTDE---YCAAAEDL 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 61 KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 120 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 L AD +A GHY+R D + M R +D +DQSYFL+ + +Q+ FP+ Sbjct: 121 DDILDADYIAMGHYVRRS-----DASGQSQMLRGVDGNKDQSYFLYTLSHEQIARSLFPV 175 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR++A+EMGL DK DS ICF+ + K+ D ++ A G I G++ Sbjct: 176 GELEKSEVREIAKEMGLVTHDKKDSTGICFIGERKFTDFLRTFLP--AQPGKIETAEGEV 233 Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304 +G H G++ +T+GQR+GLG+ +P +VV D + ++VG L Y Sbjct: 234 IGEHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLVVGQGGKHPRLMSVGFY 293 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQ 363 +++W+ DG K VK R Q V + DD + V F++ V GQ Sbjct: 294 ADQLHWVD----RTGPNDGAKITVKTRYRQQDVACTLTYEGDDRIKVIFDEPVAAVTPGQ 349 Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388 + VFY + LGGGII R Sbjct: 350 SAVFYDGEV----CLGGGIIDSLIR 370 >gi|16419753|gb|AAL20163.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|261246446|emb|CBG24256.1| 5-methylaminomethyl-2-thiouridylate-methyltrans ferase EC 2.1.1.61 [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|323129504|gb|ADX16934.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 383 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 126/394 (31%), Positives = 202/394 (51%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MIEYAALKFNVASIPMSESPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + C Sbjct: 61 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L LGAD +ATGHY+R D + + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVNGKSRLLRGLDGNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R Sbjct: 173 LGHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP-- 230 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP 294 A G I+ ++G +G H G++ +T+GQR+GLG+ +P +VV D ++ +IV Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQ 290 Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350 L + ++++W+ + +C VK R Q +P + NDD + V Sbjct: 291 GHEHPRLMSVGLIAQQLHWVD----REPFTGTLRCTVKTRYRQTDIPCTINALNDDRIEV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY+ + LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFYSGEV----CLGGGIIE 376 >gi|229591246|ref|YP_002873365.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas fluorescens SBW25] gi|259495834|sp|C3JY68|MNMA_PSEFS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|229363112|emb|CAY50124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas fluorescens SBW25] Length = 374 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 126/381 (33%), Positives = 199/381 (52%), Gaps = 26/381 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 + + RV+V MSGGVDSSV A LL GY+V G+ ++ + ++ C A D+ Sbjct: 6 PSDTQKKRVIVGMSGGVDSSVSAVLLMEQGYEVEGLFMKNWEEDDGTE---YCTAMDDLA 62 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ VCD I + + ++ + + V F + Y AG TP P + CNR +KF L Sbjct: 63 DAQAVCDKIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYAM 122 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+ Sbjct: 123 MLGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFPVGE 177 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K VR +A + GL A K DS ICF+ + ++ D +K+ A G+I +G+++G Sbjct: 178 LEKPEVRKIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGEIKTTDGEVIG 235 Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 RH+G++ +TIGQR+GLG+ EP +V+ D +++ +IVG L + Sbjct: 236 RHHGLMYHTIGQRQGLGIGGLKDAGEEPWYVLVKDLDNNVLIVGQGNEHPLLFSGALLAS 295 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 EI W+ + K+R Q P +++ G F+ + V GQ+ V Sbjct: 296 EIYWVNPIDLSTP----RRLTAKVRYRQGDQPCTLEKTATGYRATFDDPQRAVTPGQSVV 351 Query: 367 FYTSDSNEARVLGGGIISGSK 387 FY + LGGG+I ++ Sbjct: 352 FYDGEI----CLGGGVIEVAE 368 >gi|116511650|ref|YP_808866.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactococcus lactis subsp. cremoris SK11] gi|116107304|gb|ABJ72444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactococcus lactis subsp. cremoris SK11] Length = 384 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 137/390 (35%), Positives = 194/390 (49%), Gaps = 26/390 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+P RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 12 KSPAQTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 68 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 V D I V +Y ++E+ + + V F + Y AG TP P V CN+ +KF L + Sbjct: 69 VAAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAME 128 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY + R D M R D +DQ+YFL TQ+QL FPLG + Sbjct: 129 LGADYVATGHYAQVRT----DEDGTVHMLRGADNNKDQTYFLSQLTQEQLKKTMFPLGHL 184 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + GL A K DS ICF+ + + + A G ++ L+G +G Sbjct: 185 EKPEVRRIAEKAGLATAKKKDSTGICFIGEKNFKKFLGEYLP--AQPGKMMTLDGVEMGN 242 Query: 256 HNGIINYTIGQRRGLGVA------MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLR 306 H G++ YTIGQR GLG+ +P FVV D ++ + VG E L + Sbjct: 243 HAGLMYYTIGQRGGLGIGGQHGQLTSDPWFVVGKDLTTNTLYVGQGFHHEHLYSTSLDAS 302 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 ++++ + C K R Q+ V + D V VDF++ + GQA V Sbjct: 303 DLSFTREM----PETFDLHCTAKFRYRQEDTGVTIHVKADKVTVDFDEPVRAITPGQAVV 358 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396 FY + LGG +I + + V + Sbjct: 359 FYDGE----ECLGGAMIDVAYKEQKVMQYQ 384 >gi|118593646|ref|ZP_01551022.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Stappia aggregata IAM 12614] gi|118433757|gb|EAV40418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Stappia aggregata IAM 12614] Length = 392 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 215/381 (56%), Positives = 272/381 (71%), Gaps = 7/381 (1%) Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69 NSLDL P+D RVVVAMSGGVDSSVVAAL+K +GYDVIGVTLQLY+ A + SCCA Sbjct: 3 NSLDLPGRPEDTRVVVAMSGGVDSSVVAALMKAEGYDVIGVTLQLYDHGAAVSKAKSCCA 62 Query: 70 GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 G D++DARR +TI + HYV DYE RF+ V+ FA SY AGETP+PCV CN+TVKF+DL Sbjct: 63 GVDIHDARRAAETIGIPHYVLDYESRFKEQVMDRFADSYIAGETPIPCVSCNQTVKFTDL 122 Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 L + LGAD LATGHY+RS +R + RP DL+RDQSYFLFATTQ QL +R Sbjct: 123 LKTAKDLGADALATGHYVRS-----TQQGNKRALFRPADLDRDQSYFLFATTQDQLDFIR 177 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 FPLG M K VR+LA E GL +A+K DSQDICFV G Y +V++++ A G+IVH++ Sbjct: 178 FPLGGMPKSKVRELAAEFGLTVANKPDSQDICFVPNGDYAEVIRKLRPNAAEPGEIVHMD 237 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 G++LG H+GII+YTIGQRRGLGVA G+PL+VV LD + RV+VGPRE+L I LRE+N Sbjct: 238 GRVLGEHDGIIHYTIGQRRGLGVATGDPLYVVRLDPDERRVVVGPREALATRTILLREMN 297 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 W+GD ++ D + F K+RS++ P P ++ + +VD E GVA GQACVF+ Sbjct: 298 WIGDQPLDEG--DEIELFAKVRSTRPPAPATLRILNGKGFVDLANGETGVAPGQACVFFD 355 Query: 370 SDSNEARVLGGGIISGSKRSD 390 +D ARVLGGG I ++R+ Sbjct: 356 TDDETARVLGGGWIHKTERTG 376 >gi|306832460|ref|ZP_07465612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|304425360|gb|EFM28480.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus gallolyticus subsp. gallolyticus TX20005] Length = 393 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 134/388 (34%), Positives = 196/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 23 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 79 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 80 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 139 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R D +DQ+YFL +Q+QL + FPLG ++ Sbjct: 140 GADYVATGHYAQ----VSRDEDGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLE 195 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + + + A +G ++ ++G+ +G H Sbjct: 196 KPEVRKIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEH 253 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ +P FVV D + + + VG +SL + I Sbjct: 254 AGLMYYTIGQRGGLGIGGQQGGDNQPWFVVGKDLSKNILYVGQGFYHDSLMSTSLDASSI 313 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E + K R Q V V D V F++ + + GQA VFY Sbjct: 314 HFTRDMPEE----FTMEVTAKFRYRQPDSKVTVHVKGDKAEVVFDEPQRAITPGQAVVFY 369 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGGII + ++ + + Sbjct: 370 DGE----ECLGGGIIDMAYKNGVACQYI 393 >gi|225857998|ref|YP_002739508.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae 70585] gi|254811463|sp|C1CAE7|MNMA_STRP7 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|225721738|gb|ACO17592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae 70585] Length = 373 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 137/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAR----VVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ +G H Sbjct: 176 KPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG +SL + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E +C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373 >gi|221141109|ref|ZP_03565602.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus str. JKD6009] Length = 364 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 135/373 (36%), Positives = 201/373 (53%), Gaps = 20/373 (5%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + KD+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D D Sbjct: 2 SNKDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L L Sbjct: 59 IEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R + M R +D +DQ+YFL +QQQL + FP+GD++ Sbjct: 119 GADYVATGHYARIHRH----EDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIE 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A E GL A K DS ICF+ + + + + A GD++ L+G+ +G+H Sbjct: 175 KSEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKH 232 Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +G++ YTIGQR GLG+ G+P FVV + + + V ++L + + +++ Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFVN 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371 ++ + GF+C K R Q VFV+R +D + V F + + GQA VFY D Sbjct: 293 PE--DNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITPGQAVVFYQGD 350 Query: 372 SNEARVLGGGIIS 384 LGG I Sbjct: 351 V----CLGGATID 359 >gi|325979485|ref|YP_004289201.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|325179413|emb|CBZ49457.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 373 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 134/388 (34%), Positives = 196/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R D +DQ+YFL +Q+QL + FPLG ++ Sbjct: 120 GADYVATGHYAQ----VSRDEDGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + + + A +G ++ ++G+ +G H Sbjct: 176 KPEVRKIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ +P FVV D + + + VG +SL + I Sbjct: 234 AGLMYYTIGQRGGLGIGGQQGGDNQPWFVVGKDLSKNILYVGQGFYHDSLMSTSLDASSI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E + K R Q V V D V F++ + + GQA VFY Sbjct: 294 HFTRDMPEE----FTMEVTAKFRYRQPDSKVTVHVKGDKAEVVFDEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGGII + ++ + + Sbjct: 350 DGE----ECLGGGIIDMAYKNGVACQYI 373 >gi|227524073|ref|ZP_03954122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus hilgardii ATCC 8290] gi|227088812|gb|EEI24124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus hilgardii ATCC 8290] Length = 374 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 134/390 (34%), Positives = 201/390 (51%), Gaps = 26/390 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 ++ RVVV MSGGVDSSVVA LLK+ GYDVIGV ++ ++ + G C A +D D Sbjct: 2 QDNSQTRVVVGMSGGVDSSVVAYLLKQQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 +V + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L + Sbjct: 59 VAKVANKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPDPDVICNKEIKFKAFLDYALE 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY + + D + R D +DQ+YFL + QL + FP+G++ Sbjct: 119 LGADYIATGHYAQ----LTRDEDGHNHLLRASDGNKDQTYFLSQLSANQLDRVMFPIGNL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K VR++AR+ GL ADK DS ICF+ + + + A G ++ ++G++ G+ Sbjct: 175 VKPEVREIARKAGLATADKKDSVGICFIGEKNFKQFLGHYLP--ATPGKMMTVDGEVKGQ 232 Query: 256 HNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308 H+G++ YTIGQRRGLG+ +P FV+ D + + VG E L + +I Sbjct: 233 HDGLMYYTIGQRRGLGIGGDGVDNQPWFVIGKDLKKNILYVGKGYHNELLYADYLEASDI 292 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366 +W+ + F C K R Q V V +DDG V VDF+ + GQA V Sbjct: 293 HWVNNLDR----GQDFHCTAKFRYRQRDTGVTVHLSDDGQKVRVDFDAPVRAITPGQAVV 348 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396 FY + LG II + + + + Sbjct: 349 FYDGE----ECLGSAIIDAAYKQAEELQYV 374 >gi|149191014|ref|ZP_01869275.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio shilonii AK1] gi|148835148|gb|EDL52124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio shilonii AK1] Length = 369 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 120/380 (31%), Positives = 196/380 (51%), Gaps = 28/380 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 60 QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY+ + + M R +D +DQSYFL+ + Q+ FP+G++ Sbjct: 120 LDADYIAMGHYVSRTF---PENGEKPQMLRGLDSNKDQSYFLYTLSHDQVARSLFPVGEL 176 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL A K DS ICF+ + K+ D + R A G I G+++G Sbjct: 177 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGE 234 Query: 256 HNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYL 305 H G++ +T+GQR+GL + EP +V + + +I L+ + + Sbjct: 235 HQGLMYHTLGQRKGLHIGGQKGGGGNEEPWYVAEKNLERNVLIAVQGADHPLLKSNGLRA 294 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQA 364 +++W+ +A+ + +C VK R Q +P + +DD + V F++ +V V GQ+ Sbjct: 295 SQLHWVS----REAIKEPMQCTVKTRYRQQDIPCTIIPIDDDNIKVIFDEPQVAVTPGQS 350 Query: 365 CVFYTSDSNEARVLGGGIIS 384 VFY+ + LGGGII Sbjct: 351 AVFYSDNV----CLGGGIIE 366 >gi|299535696|ref|ZP_07049017.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lysinibacillus fusiformis ZC1] gi|298728896|gb|EFI69450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lysinibacillus fusiformis ZC1] Length = 374 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 133/381 (34%), Positives = 205/381 (53%), Gaps = 22/381 (5%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 ++P +RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ ++ + G C A +D Sbjct: 4 TRDPSQIRVVVGMSGGVDSSVAAYLLKQQGYEVIGIFMKNWDD---TDENGVCTATEDYD 60 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 D +VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 61 DVIKVCNQIGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLEHAM 120 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD LATGHY R + +G M R +D +DQ+YFL +Q+QL + FP+GD Sbjct: 121 NLGADYLATGHYAR----IDRNGDGEVRMLRGVDDNKDQTYFLNQLSQEQLAHVMFPIGD 176 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K+ VR +A E GL A K DS ICF+ + + + + + A G + ++G ++G Sbjct: 177 IEKKEVRKIAEEAGLATAKKKDSTGICFIGERNFKEFLSQYLP--AQPGKMETMDGVVMG 234 Query: 255 RHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 +H+G++ YT+GQR GLG+ GEP FV+ D + ++VG E + ++N+ Sbjct: 235 QHDGLMYYTLGQRHGLGIGGDGEPWFVLGKDLARNVLLVGQGFDNEYSYSTSLTAVKMNY 294 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + F C K R Q PV V+ DG ++ F + + GQA V Y Sbjct: 295 TS----TKKLPGKFSCTAKFRYRQTDTPVEVEILPDGRAHITFAEPVRAITPGQAVVLYN 350 Query: 370 SDSNEARVLGGGIISGSKRSD 390 + +GGG I +S+ Sbjct: 351 GE----ECMGGGTIDEVFKSN 367 >gi|160875703|ref|YP_001555019.1| tRNA-specific 2-thiouridylase MnmA [Shewanella baltica OS195] gi|160861225|gb|ABX49759.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella baltica OS195] gi|315267892|gb|ADT94745.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella baltica OS678] Length = 392 Score = 500 bits (1288), Expect = e-139, Method: Composition-based stats. Identities = 125/385 (32%), Positives = 200/385 (51%), Gaps = 27/385 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ +V+V MSGGVDSSV A LL + GY V G+ ++ + ++ C A +D+ Sbjct: 24 IEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNE---YCAAAEDL 80 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 81 KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 140 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + L AD +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+ Sbjct: 141 DEILDADYIAMGHYVRRR----DNTDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPV 196 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR++A+EMGL DK DS ICF+ + K+ + + A G+I G++ Sbjct: 197 GELEKHEVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEV 254 Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304 +G H G++ +T+GQR+GLG+ +P +VV D + +IV G L + Sbjct: 255 IGTHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMT 314 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363 + +++W+ +DG VK R Q VP + D+ + V F++ V GQ Sbjct: 315 VNQLHWVD----RTGPIDGCHIAVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQ 370 Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388 + VFY + LGGGII R Sbjct: 371 SAVFYDGEV----CLGGGIIDQLIR 391 >gi|157370264|ref|YP_001478253.1| tRNA-specific 2-thiouridylase MnmA [Serratia proteamaculans 568] gi|166991124|sp|A8GDD5|MNMA_SERP5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|157322028|gb|ABV41125.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Serratia proteamaculans 568] Length = 367 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 123/378 (32%), Positives = 197/378 (52%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVTAYLLQQQGYQVAGLFMKNWEEDDDEE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + D + + R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 120 LGADFIATGHYVRRQ-----DVDSKSRLLRGVDGNKDQSYFLYTLSHEQVAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++ L A K DS ICF+ + K+ D + R A G IV ++GQ +G Sbjct: 175 EKPEVRRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVSVDGQTVGE 232 Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ +P +VV D ++ ++V L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGMKDSSEDPWYVVDKDVANNVLVVAQGHEHPRLMSVGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366 ++W+ + F+C VK R Q +P V D+ + V F++ V GQ+ V Sbjct: 293 LHWVD----RLPLSGPFRCTVKTRYRQQDIPCTVTPLDEQRIEVRFDEPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 349 FYQDEI----CLGGGIIE 362 >gi|327467648|gb|EGF13145.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis SK330] Length = 373 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 133/388 (34%), Positives = 194/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWERVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQVKR----DQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + + + A G ++ L G+ +G+H Sbjct: 176 KPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ EP FVV D + + + VG ++L + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTKEMPEE----FTMECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGKVCQYV 373 >gi|196039389|ref|ZP_03106695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus NVH0597-99] gi|206976034|ref|ZP_03236944.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus H3081.97] gi|217961886|ref|YP_002340456.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus AH187] gi|218905591|ref|YP_002453425.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH820] gi|225866378|ref|YP_002751756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus 03BB102] gi|196030016|gb|EDX68617.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus NVH0597-99] gi|206745786|gb|EDZ57183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus H3081.97] gi|217066211|gb|ACJ80461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH187] gi|218535576|gb|ACK87974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH820] gi|225789110|gb|ACO29327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus 03BB102] Length = 372 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 138/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 2 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 59 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 119 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 174 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 231 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + + Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 291 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + E FKC K R Q+ V VQ +++ V + ++ + GQA VFY Sbjct: 292 WVSNEAKE----KEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 347 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I RS + L Sbjct: 348 DGD----ECLGGATIDEVYRSGKKLDYL 371 >gi|322388413|ref|ZP_08062016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus infantis ATCC 700779] gi|321140726|gb|EFX36228.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus infantis ATCC 700779] Length = 373 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 137/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAR----VLRDEDGVVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ +G H Sbjct: 176 KPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKEFLSNYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG +SL + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSQNILYVGQGFYHDSLMSTSLEASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E +C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGKVCQYI 373 >gi|153000990|ref|YP_001366671.1| tRNA-specific 2-thiouridylase MnmA [Shewanella baltica OS185] gi|151365608|gb|ABS08608.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella baltica OS185] Length = 392 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 126/385 (32%), Positives = 200/385 (51%), Gaps = 27/385 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ +V+V MSGGVDSSV A LL + GY V G+ ++ + ++ C A +D+ Sbjct: 24 IEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNE---YCAAAEDL 80 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 81 KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 140 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + L AD +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+ Sbjct: 141 DEILDADYIAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPV 196 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR++A+EMGL DK DS ICF+ + K+ + + A G+I G++ Sbjct: 197 GELEKHEVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEV 254 Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304 +G H G++ +T+GQR+GLG+ +P +VV D + +IV G L + Sbjct: 255 IGTHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMT 314 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363 + +++W+ VDG VK R Q VP + D+ + V F++ V GQ Sbjct: 315 VNQLHWVD----RTGPVDGCHIAVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQ 370 Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388 + VFY + LGGGII R Sbjct: 371 SAVFYDGEV----CLGGGIIDQLIR 391 >gi|47566584|ref|ZP_00237406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus G9241] gi|49481478|ref|YP_038446.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52141111|ref|YP_085718.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus E33L] gi|222097839|ref|YP_002531896.1| tRNA-specific 2-thiouridylase mnma [Bacillus cereus Q1] gi|254724677|ref|ZP_05186460.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. A1055] gi|300119218|ref|ZP_07056915.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus SJ1] gi|301055904|ref|YP_003794115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis CI] gi|71658010|sp|Q634E9|MNMA_BACCZ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|73919896|sp|Q6HDD0|MNMA_BACHK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205814924|sp|A0RJ05|MNMA_BACAH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|254811444|sp|B9IYG1|MNMA_BACCQ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|47556614|gb|EAL14946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus G9241] gi|49333034|gb|AAT63680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51974580|gb|AAU16130.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus E33L] gi|221241897|gb|ACM14607.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Q1] gi|298723438|gb|EFI64183.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus SJ1] gi|300378073|gb|ADK06977.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus biovar anthracis str. CI] Length = 371 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 138/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 118 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 173 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + + Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + E FKC K R Q+ V VQ +++ V + ++ + GQA VFY Sbjct: 291 WVSNEAKE----KEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I RS + L Sbjct: 347 DGD----ECLGGATIDEVYRSGKKLDYL 370 >gi|168483769|ref|ZP_02708721.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae CDC1873-00] gi|172042905|gb|EDT50951.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae CDC1873-00] Length = 373 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 138/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG +K Sbjct: 120 GADYVATGHYAR----VVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLK 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ +G H Sbjct: 176 KPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG +SL + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E +C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373 >gi|30022472|ref|NP_834103.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus ATCC 14579] gi|206969454|ref|ZP_03230408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH1134] gi|296504889|ref|YP_003666589.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis BMB171] gi|29898030|gb|AAP11304.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Bacillus cereus ATCC 14579] gi|206735142|gb|EDZ52310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH1134] gi|296325941|gb|ADH08869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis BMB171] gi|326942178|gb|AEA18074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar chinensis CT-43] Length = 372 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 138/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 2 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 59 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 119 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 174 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 231 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + + Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 291 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + E FKC K R Q+ V VQ +++ V + ++ + GQA VFY Sbjct: 292 WVSNKEKET----EFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 347 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I RS + L Sbjct: 348 DGD----ECLGGATIDEVYRSGKKLDYL 371 >gi|168487074|ref|ZP_02711582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae CDC1087-00] gi|183570004|gb|EDT90532.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae CDC1087-00] Length = 373 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 136/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAR----VVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ +G H Sbjct: 176 KPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG +SL + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373 >gi|303255169|ref|ZP_07341245.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae BS455] gi|303259175|ref|ZP_07345153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP-BS293] gi|303263258|ref|ZP_07349181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae BS397] gi|303265423|ref|ZP_07351323.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae BS457] gi|302597999|gb|EFL65069.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae BS455] gi|302639593|gb|EFL70050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP-BS293] gi|302644863|gb|EFL75110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae BS457] gi|302647031|gb|EFL77255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae BS397] Length = 373 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 137/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ +G H Sbjct: 176 KPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG +SL + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E +C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373 >gi|42783525|ref|NP_980772.1| tRNA-specific 2-thiouridylase MnmA [Bacillus cereus ATCC 10987] gi|73919894|sp|Q730D7|MNMA_BACC1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|42739454|gb|AAS43380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus ATCC 10987] Length = 371 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 138/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 118 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 173 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + + Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + E FKC K R Q+ V VQ +++ V + ++ + GQA VFY Sbjct: 291 WVSNKAKE----KEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I RS + L Sbjct: 347 DGD----ECLGGATIDEVYRSGKKLDYL 370 >gi|218899565|ref|YP_002447976.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus G9842] gi|218543622|gb|ACK96016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus G9842] Length = 372 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 138/388 (35%), Positives = 204/388 (52%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 2 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 59 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 119 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 174 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 231 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + + Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 291 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + + E FKC K R Q+ V VQ +++ V + ++ + GQA VFY Sbjct: 292 WVSNKVKET----EFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 347 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I RS + L Sbjct: 348 DGD----ECLGGATIDEVYRSGKKLDYL 371 >gi|73919895|sp|Q812R6|MNMA_BACCR RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 371 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 138/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 118 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 173 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + + Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + E FKC K R Q+ V VQ +++ V + ++ + GQA VFY Sbjct: 291 WVSNKEKET----EFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I RS + L Sbjct: 347 DGD----ECLGGATIDEVYRSGKKLDYL 370 >gi|205829101|sp|B2IRK2|MNMA_STRPS RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 373 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 136/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAR----VVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ +G H Sbjct: 176 KPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG +SL + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFTEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373 >gi|260772624|ref|ZP_05881540.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio metschnikovii CIP 69.14] gi|260611763|gb|EEX36966.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio metschnikovii CIP 69.14] Length = 372 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 117/382 (30%), Positives = 191/382 (50%), Gaps = 26/382 (6%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72 D +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A +D Sbjct: 3 DNRSANSQKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEE---YCTAAED 59 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 + DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 60 LADAQAVCDKLGIYLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEF 119 Query: 133 TRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + L AD +A GHY+R + M R +D +DQSYFL+ + +Q+ FP Sbjct: 120 ADEVLDADYIAMGHYVRRTFPTQ---GEKPQMLRGLDSNKDQSYFLYTLSHEQVARSLFP 176 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 +G+++K VR +A E GL A K DS ICF+ + K+ D + R A G I G+ Sbjct: 177 VGELEKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGK 234 Query: 252 ILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRI 303 ++G H G++ +T+GQR+GL + +P +V D + +I L+ + Sbjct: 235 VIGEHQGLMYHTLGQRKGLHIGGLKDGSEQPWYVAEKDLQRNVLIAVQGADHPLLKSQGL 294 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASG 362 +++W+ + + +C VK R Q + + D+ + V F++ ++ V G Sbjct: 295 VASQLHWVS----RQTITEPTRCTVKTRYRQTDIACTIIPLDEQNIKVMFDEPQIAVTPG 350 Query: 363 QACVFYTSDSNEARVLGGGIIS 384 Q+ VFY + LGGGII Sbjct: 351 QSAVFYQGEV----CLGGGIIE 368 >gi|165872748|ref|ZP_02217376.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. A0488] gi|167636496|ref|ZP_02394793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. A0442] gi|167638584|ref|ZP_02396860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. A0193] gi|170689637|ref|ZP_02880819.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. A0465] gi|170709396|ref|ZP_02899807.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. A0389] gi|177653267|ref|ZP_02935519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. A0174] gi|190566853|ref|ZP_03019769.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis Tsiankovskii-I] gi|227817175|ref|YP_002817184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. CDC 684] gi|229601635|ref|YP_002868683.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. A0248] gi|164711524|gb|EDR17073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. A0488] gi|167513432|gb|EDR88802.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. A0193] gi|167528089|gb|EDR90886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. A0442] gi|170125695|gb|EDS94611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. A0389] gi|170666407|gb|EDT17188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. A0465] gi|172081549|gb|EDT66621.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. A0174] gi|190561844|gb|EDV15813.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis Tsiankovskii-I] gi|227004048|gb|ACP13791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. CDC 684] gi|229266043|gb|ACQ47680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. A0248] Length = 372 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 137/383 (35%), Positives = 201/383 (52%), Gaps = 23/383 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 2 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 59 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 119 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 174 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 231 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + + Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 291 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + E FKC K R Q+ V VQ +++ V + ++ + GQA VFY Sbjct: 292 WVSNEAKE----KEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 347 Query: 369 TSDSNEARVLGGGIISGSKRSDA 391 D LGG I RS Sbjct: 348 DGD----ECLGGATIDEVYRSGK 366 >gi|330828858|ref|YP_004391810.1| putative tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Aeromonas veronii B565] gi|328803994|gb|AEB49193.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Aeromonas veronii B565] Length = 368 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 123/377 (32%), Positives = 200/377 (53%), Gaps = 27/377 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + ++V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A QD+ DA Sbjct: 3 DNSQIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDTDE---YCSAAQDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L + Sbjct: 60 KAVCDKLGMKLHTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEE 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGA +ATGHY+R DD R + R +D +DQSYFL+ +++Q+ FP+GD+ Sbjct: 120 LGATYIATGHYVRR-----DDSTGRPRLLRGLDTNKDQSYFLYTLSEKQVGQSLFPVGDL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++ L A K DS ICF+ + K+ D + + A G I ++G+++G Sbjct: 175 EKPEVRRIAEQLDLITAKKKDSTGICFIGERKFKDFLAKFLP--AQPGKIETVDGKVIGE 232 Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV--GPRESLEVHRIYLREI 308 H G++ +T+GQR+GLG+ E +VV + + ++V G L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGRKDATEEAWYVVDKEVERNVLVVAQGEHPRLYSDGLIASQL 292 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVF 367 +W+ + + +C VK R Q +P +Q DD + V F++ + V GQ+ VF Sbjct: 293 HWVD----RTPIREPRRCTVKTRYRQQDIPCLIQPIDDETIRVIFDEKQAAVTPGQSAVF 348 Query: 368 YTSDSNEARVLGGGIIS 384 Y + LGGGII Sbjct: 349 YDGEV----CLGGGIIE 361 >gi|326623649|gb|EGE29994.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628111|gb|EGE34454.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 383 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 126/394 (31%), Positives = 202/394 (51%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 MV A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MVEYAALKFNVASIPMSESPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + C Sbjct: 61 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L LGAD +ATGHY+R D + + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVNGKSRLLRGLDGNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R Sbjct: 173 LGHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP-- 230 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP 294 A G I+ ++G +G H G++ +T+GQR+GLG+ +P +VV D ++ +IV Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQ 290 Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350 L + ++++W+ + +C VK R Q +P + +DD + V Sbjct: 291 GHEHPRLMSVGLIAQQLHWVD----REPFTGTLRCTVKTRYRQTDIPCTINALDDDRIEV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY+ + LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFYSGEV----CLGGGIIE 376 >gi|171778579|ref|ZP_02919706.1| hypothetical protein STRINF_00558 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171282802|gb|EDT48226.1| hypothetical protein STRINF_00558 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 406 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 136/388 (35%), Positives = 194/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 36 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 92 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 93 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 152 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R D +DQ+YFL +Q+QL + FPLG +K Sbjct: 153 GADYVATGHYAQ----VSRDEDGTVHMLRGADNNKDQTYFLSQLSQEQLEKVMFPLGHLK 208 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H Sbjct: 209 KPEVRKIAERAGLVTAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTVDGRDMGEH 266 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG ESL + I Sbjct: 267 AGLMYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSKNILYVGQGFYHESLMSTSLDASSI 326 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E + K R Q V V D V F++ + + GQA VFY Sbjct: 327 HFTRDMPEE----FTMEVTAKFRYRQPDSKVTVHVKGDKAEVIFDEPQRAITPGQAVVFY 382 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGGII + ++ + + Sbjct: 383 DGE----ECLGGGIIDMAYKNGVACQYI 406 >gi|320086325|emb|CBY96098.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 383 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 125/394 (31%), Positives = 202/394 (51%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MIEYAALKFNVASIPMSESPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + C Sbjct: 61 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L LGAD +ATGHY+R D + + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVNGKSRLLRGLDGNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R Sbjct: 173 LGHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP-- 230 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP 294 A G I+ ++G +G H G++ +T+GQR+GLG+ +P +VV D ++ +IV Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQ 290 Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350 L + ++++W+ + +C VK R Q +P + +DD + V Sbjct: 291 GHEHPRLMSVGLIAQQLHWVD----REPFTGTLRCTVKTRYRQTDIPCTINALDDDRIEV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY+ + LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFYSGEV----CLGGGIIE 376 >gi|307707803|ref|ZP_07644280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus mitis NCTC 12261] gi|307616063|gb|EFN95259.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus mitis NCTC 12261] Length = 373 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 138/391 (35%), Positives = 198/391 (50%), Gaps = 26/391 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + +N K RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSENSK-TRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 56 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D V D I + +Y ++E+ + ++V F + Y AG TP P V CN+ +KF L Sbjct: 57 KDVAAVADQIGIPYYSVNFEKEYWDSVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 116 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG Sbjct: 117 MTLGADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR LA E GL A K DS ICF+ + + + + A G ++ ++ + + Sbjct: 173 HLEKPEVRKLAEEAGLATAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDSRDM 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 G H G++ YTIGQR GLG+ P FVV D + + + VG +SL + Sbjct: 231 GEHAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEA 290 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 ++++ D E +C K R Q V V D V F + + + GQA Sbjct: 291 SQVHFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAV 346 Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEESL 396 VFY + LGGG+I + R V + + Sbjct: 347 VFYDGE----ECLGGGLIDNAYRDGQVCQYI 373 >gi|324328299|gb|ADY23559.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis serovar finitimus YBT-020] Length = 371 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 138/388 (35%), Positives = 204/388 (52%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 118 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 173 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + + Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + E FKC K R Q+ V VQ +++ V++ ++ + GQA VFY Sbjct: 291 WVSNEAKE----KEFKCTAKFRYRQEDNKVTVQIVDENTVHILCDEPIRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I RS + L Sbjct: 347 DGD----ECLGGATIDEVYRSGKKLDYL 370 >gi|326803425|ref|YP_004321243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aerococcus urinae ACS-120-V-Col10a] gi|326651703|gb|AEA01886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aerococcus urinae ACS-120-V-Col10a] Length = 374 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 126/389 (32%), Positives = 195/389 (50%), Gaps = 26/389 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + K+ +VV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DKKNKKVVLGMSGGVDSSVSALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYRDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + V I + +Y ++E+ + + V F Y TP P V CN+ +KF L L Sbjct: 60 QAVASQIGIPYYSVNFEKEYWDRVFEYFLDEYRHDRTPNPDVMCNKEIKFKAFLDYALDL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +A GHY R R + R +D +DQ+YFL +Q+QL FP+G+++ Sbjct: 120 GADYVAMGHYARVRTNDQ----GEVELLRGVDSNKDQTYFLNQLSQEQLQHALFPIGELE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A + L A K DS +CF+ + + + +A G + L+GQ++ H Sbjct: 176 KSEVRKIAEDHNLKTAHKKDSTGVCFIGERDFNAFLSNYL--LAKPGLMKTLDGQVMAEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308 +G++ YTIGQR+GLG+ EP FV+ ++ + + VG L + E+ Sbjct: 234 HGLMYYTIGQRKGLGIGGTKVGNNEPWFVIGKNQAKNELYVGQGYHHPLLYADYLLASEV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVF 367 ++ D + F C K R Q +PV V +DD + VDFE+ + GQ+ VF Sbjct: 294 SFTSDHF----PPEDFTCTAKFRYRQKDIPVKVSFLSDDHLRVDFEEPVRAITPGQSVVF 349 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396 Y + LGG I + + D + Sbjct: 350 YKDEV----CLGGATIDAAYKDDKKLQYQ 374 >gi|30264466|ref|NP_846843.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Ames] gi|47529924|ref|YP_021273.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. 'Ames Ancestor'] gi|49187287|ref|YP_030539.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Sterne] gi|254684152|ref|ZP_05148012.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. CNEVA-9066] gi|254736499|ref|ZP_05194205.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Western North America USA6153] gi|254741537|ref|ZP_05199224.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Kruger B] gi|254751364|ref|ZP_05203401.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Vollum] gi|254757696|ref|ZP_05209723.1| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. Australia 94] gi|73919893|sp|Q81JE5|MNMA_BACAN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|30259124|gb|AAP28329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. Ames] gi|47505072|gb|AAT33748.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. 'Ames Ancestor'] gi|49181214|gb|AAT56590.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus anthracis str. Sterne] Length = 371 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 137/383 (35%), Positives = 201/383 (52%), Gaps = 23/383 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 118 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 173 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + + Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + E FKC K R Q+ V VQ +++ V + ++ + GQA VFY Sbjct: 291 WVSNEAKE----KEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDA 391 D LGG I RS Sbjct: 347 DGD----ECLGGATIDEVYRSGK 365 >gi|328945150|gb|EGG39305.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis SK1087] Length = 373 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 133/388 (34%), Positives = 199/388 (51%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQVKR----DQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + + + A G ++ L G+ +G+H Sbjct: 176 KPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ EP FVV D + + + VG ++L + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V D V+F++ + + GQA VFY Sbjct: 294 HFTKEMPEE----FTMECTAKFRYRQPDSKVTVTVKGDKAAVNFDQPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGGG+I + ++ V + + Sbjct: 350 DGD----ECLGGGLIDRAYKNGQVLQYV 373 >gi|330016186|ref|ZP_08308416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Klebsiella sp. MS 92-3] gi|328529471|gb|EGF56376.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Klebsiella sp. MS 92-3] Length = 388 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 124/394 (31%), Positives = 203/394 (51%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 ++ A++ N + + +V+V MSGGVDSSV A LL + GY V G+ ++ + Sbjct: 6 VLEYAASKFNVASISMSESQKKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDG 65 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + C Sbjct: 66 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILC 122 Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L LGAD +ATGHY+R D + + R +D +DQSYFL+ Sbjct: 123 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVNGKSQLLRGLDGNKDQSYFLYT 177 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR +A E+ L A K DS ICF+ + K+ D + R Sbjct: 178 LSHEQIAQSLFPVGELEKPQVRKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP-- 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP 294 A G I+ ++G+ +G H G++ +T+GQR+GLG+ +P +VV D ++ +IV Sbjct: 236 AQPGKILTVDGEEIGTHQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQ 295 Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350 L + ++++W+ + + +C VK R Q +P V ++D + V Sbjct: 296 GHDHPRLMSVGLIAQQLHWVN----REPLQGTLRCTVKTRYRQTDIPCTVTALDEDRIEV 351 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY + LGGGII Sbjct: 352 RFDEPVAAVTPGQSAVFYLGEV----CLGGGIIE 381 >gi|118479554|ref|YP_896705.1| tRNA-specific 2-thiouridylase MnmA [Bacillus thuringiensis str. Al Hakam] gi|228929441|ref|ZP_04092462.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228935717|ref|ZP_04098530.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228948110|ref|ZP_04110394.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228987648|ref|ZP_04147762.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229093467|ref|ZP_04224570.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Rock3-42] gi|229123937|ref|ZP_04253129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus 95/8201] gi|229141133|ref|ZP_04269675.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus BDRD-ST26] gi|229158012|ref|ZP_04286083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus ATCC 4342] gi|118418779|gb|ABK87198.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis str. Al Hakam] gi|228625465|gb|EEK82221.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus ATCC 4342] gi|228642411|gb|EEK98700.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus BDRD-ST26] gi|228659239|gb|EEL14887.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus 95/8201] gi|228689938|gb|EEL43742.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Rock3-42] gi|228772108|gb|EEM20560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228811468|gb|EEM57805.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823955|gb|EEM69774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228830229|gb|EEM75845.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 376 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 138/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 6 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + + Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 295 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + E FKC K R Q+ V VQ +++ V + ++ + GQA VFY Sbjct: 296 WVSNEAKE----KEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 351 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I RS + L Sbjct: 352 DGD----ECLGGATIDEVYRSGKKLDYL 375 >gi|90961839|ref|YP_535755.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus salivarius UCC118] gi|122449023|sp|Q1WTT7|MNMA_LACS1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|90821033|gb|ABD99672.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus salivarius UCC118] Length = 375 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 132/390 (33%), Positives = 201/390 (51%), Gaps = 25/390 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+ +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + S G C +D D Sbjct: 2 KDKSQIRVVVGMSGGVDSSVSAYLLKQQGYDVVGVFMKNWDDKNDS---GVCTVTEDYQD 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 +V I + +Y ++E+ + + V F Y G TP P + CN+ VKF L Sbjct: 59 VAKVASQIGIPYYSVNFEKEYWDRVFTYFLDEYKNGRTPNPDIMCNKEVKFKAFLDYAMS 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 + AD +A GHY + R D R + R D +DQ+YFL +Q+QL + FP+G + Sbjct: 119 IDADYIAMGHYAQLRR----DEDGRVHLLRGADDNKDQTYFLSQLSQEQLQKVMFPIGHL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL A K DS ICF+ + + + A G++V L+G++ G Sbjct: 175 QKSEVRRIAEEAGLATAKKKDSTGICFIGERNFSKFLGEFLP--AQPGEMVTLDGEVKGN 232 Query: 256 HNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308 H G++NYTIGQR+GLG+ EP FV+ D ++ ++VG E L + + ++ Sbjct: 233 HFGLMNYTIGQRKGLGIGGDGKSNEPWFVIGKDLKTNTLLVGQGYHNEHLYANSLDASKL 292 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366 +++ D D F C K R Q V V+ N+D V V F++ + GQ V Sbjct: 293 SFVDDI---SDCGDEFHCTAKFRYRQKDTGVTVKFNEDRTKVEVIFDEPVRAITPGQEVV 349 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396 FY + LG G I + + + + + Sbjct: 350 FYDGE----ECLGSGTIDHAYKESKLLQYV 375 >gi|62127388|gb|AAX65091.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] Length = 383 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 126/394 (31%), Positives = 202/394 (51%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 MV A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MVEYAALKFNVASIPMSESPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + C Sbjct: 61 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L LGAD +ATGHY+R D + + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVNGKSRLLRGLDGNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R Sbjct: 173 LGHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP-- 230 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294 A G I+ ++G +G H G++ +T+GQR+GLG+ +P +VV D ++ +IV Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGTEDPWYVVDKDVENNVLIVAQ 290 Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350 L + ++++W+ + +C VK R Q +P + +DD + V Sbjct: 291 GHEHPRLMSVGLIAQQLHWVD----REPFTGTLRCTVKTRYRQTDIPCTINALDDDRIEV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY+ + LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFYSGEV----CLGGGIIE 376 >gi|149010994|ref|ZP_01832299.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP19-BS75] gi|147764630|gb|EDK71560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP19-BS75] Length = 373 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 136/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAR----VVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ +G H Sbjct: 176 KPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG +SL + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDEAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373 >gi|313498097|gb|ADR59463.1| MnmA [Pseudomonas putida BIRD-1] Length = 374 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 126/382 (32%), Positives = 197/382 (51%), Gaps = 26/382 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+P RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ D Sbjct: 7 KDPAKTRVIVGMSGGVDSSVSALLLIEQGYQVEGLFMKNWEEDDGTE---YCTAREDLAD 63 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ VCD I + + ++ + + V F Y AG TP P + CNR +KF L Sbjct: 64 AQAVCDRIGIKLHTANFAAEYWDNVFEHFLDEYKAGRTPNPDILCNREIKFKAFLDYALS 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD++ATGHY+R R D + + +D +DQSYFL A +++ FP+G++ Sbjct: 124 LGADLIATGHYVRRR-----DTGTLTELLKGLDPNKDQSYFLHAVGGKEIARTLFPVGEL 178 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + GL A K DS ICF+ + ++ D +K+ A GDI G+++GR Sbjct: 179 EKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGDIETTEGEVIGR 236 Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H+G++ +TIGQR+GLG+ EP +V++ D + ++VG L + E Sbjct: 237 HHGLMYHTIGQRQGLGIGGLKDASDEPWYVLHKDLARNVLVVGQGNEHPWLFSRALLASE 296 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 I W+ + + K+R Q ++R G F++ + V GQ+ VF Sbjct: 297 IFWVNPVD----LGSPRQLTAKVRYRQSDQRCTLERTASGYRAVFDEPQRAVTPGQSVVF 352 Query: 368 YTSDSNEARVLGGGIISGSKRS 389 Y + LGGG+I ++ Sbjct: 353 YDGEV----CLGGGVIEAAEPW 370 >gi|228923148|ref|ZP_04086439.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228941564|ref|ZP_04104113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228954681|ref|ZP_04116704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228960668|ref|ZP_04122313.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228974494|ref|ZP_04135061.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981088|ref|ZP_04141389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis Bt407] gi|229048104|ref|ZP_04193677.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH676] gi|229071905|ref|ZP_04205116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus F65185] gi|229081661|ref|ZP_04214156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Rock4-2] gi|229111869|ref|ZP_04241415.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Rock1-15] gi|229129677|ref|ZP_04258645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus BDRD-Cer4] gi|229146967|ref|ZP_04275331.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus BDRD-ST24] gi|229152600|ref|ZP_04280789.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus m1550] gi|229180672|ref|ZP_04308012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus 172560W] gi|229192608|ref|ZP_04319569.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus ATCC 10876] gi|228590915|gb|EEK48773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus ATCC 10876] gi|228602817|gb|EEK60298.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus 172560W] gi|228630861|gb|EEK87501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus m1550] gi|228636566|gb|EEK93032.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus BDRD-ST24] gi|228653794|gb|EEL09664.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus BDRD-Cer4] gi|228671625|gb|EEL26923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Rock1-15] gi|228701665|gb|EEL54156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Rock4-2] gi|228711201|gb|EEL63165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus F65185] gi|228723259|gb|EEL74631.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH676] gi|228778629|gb|EEM26895.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis Bt407] gi|228785211|gb|EEM33223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228799032|gb|EEM46004.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228805008|gb|EEM51604.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228818120|gb|EEM64196.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228836527|gb|EEM81877.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 376 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 138/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 6 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + + Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 295 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + E FKC K R Q+ V VQ +++ V + ++ + GQA VFY Sbjct: 296 WVSNKEKET----EFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 351 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I RS + L Sbjct: 352 DGD----ECLGGATIDEVYRSGKKLDYL 375 >gi|229032046|ref|ZP_04188029.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH1271] gi|228729291|gb|EEL80285.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH1271] Length = 376 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 139/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P++ RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 6 MNKLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A E GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 178 ELKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + I Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNIG 295 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + E FKC K R Q+ V VQ +++ V + ++ + GQA VFY Sbjct: 296 WVSNEAKE----KEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 351 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I RS + L Sbjct: 352 DGD----ECLGGATIDEVYRSGKKLDYL 375 >gi|148983522|ref|ZP_01816841.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP3-BS71] gi|221231050|ref|YP_002510202.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae ATCC 700669] gi|254811464|sp|B8ZK04|MNMA_STRPJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|147923669|gb|EDK74781.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP3-BS71] gi|220673510|emb|CAR67990.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae ATCC 700669] gi|301799298|emb|CBW31824.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae OXC141] Length = 373 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 136/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ +G H Sbjct: 176 KPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG +SL + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373 >gi|319746158|gb|EFV98430.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae ATCC 13813] Length = 397 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 141/391 (36%), Positives = 202/391 (51%), Gaps = 25/391 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 L + ++RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D Sbjct: 24 LMTDNSNIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDY 80 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 81 KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 140 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + V D M R +D +DQ+YFL +Q+QL FPLG Sbjct: 141 MTLGADYVATGHYAQ----VTRDKNGIVHMLRGVDNNKDQTYFLSQLSQEQLQKTLFPLG 196 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR +A E GL A K DS ICF+ + + D + + A G ++ ++G+ + Sbjct: 197 HLQKPEVRRIAEEAGLATAKKKDSTGICFIGEKNFKDFLGQYLP--AQPGRMMTVDGRDM 254 Query: 254 GRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 G H G++ YTIGQR GLG+ +P FVV D + + + VG +SL + Sbjct: 255 GEHAGLMYYTIGQRGGLGIGGQHGGDNKPWFVVGKDLSKNILYVGQGFYHDSLMSTSLTA 314 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 EI++ D E +C K R Q V V + V F+ + + GQA Sbjct: 315 SEIHFTRDMPNEFK----LECTAKFRYRQPDSKVTVYVKGNQARVVFDDLQRAITPGQAV 370 Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEESL 396 VFY NE LGGG+I + R D + + + Sbjct: 371 VFY----NEQECLGGGMIDQAYRDDKICQYI 397 >gi|308174451|ref|YP_003921156.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Bacillus amyloliquefaciens DSM 7] gi|307607315|emb|CBI43686.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Bacillus amyloliquefaciens DSM 7] gi|328912774|gb|AEB64370.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Bacillus amyloliquefaciens LL3] Length = 371 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 141/383 (36%), Positives = 198/383 (51%), Gaps = 22/383 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P+D RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVIRVCNQIGIPYYAVNFEKQYWEKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLDHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY R D M R +D +DQ+YFL Q+QL + FP+G Sbjct: 118 LSLGADYLATGHYARV-----DRSGDTVRMLRGLDENKDQTYFLNQLNQEQLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 D++K VR++A+E L A K DS ICF+ + + + + A GD++ ++G++ Sbjct: 173 DLQKSRVREIAKEAELATAAKKDSTGICFIGERNFKTFLSQYLP--AQPGDMMTMDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 GRH+G++ YTIGQR GLG+ GEP F V D + + V L +I I+ Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368 W GL + C K R Q+ V V+ D + F+ V GQA VFY Sbjct: 291 WTRPGLMDG---GEMTCTAKFRYRQEDHKVTVKMTGADEAEIIFDGQVRAVTPGQAVVFY 347 Query: 369 TSDSNEARVLGGGIISGSKRSDA 391 + LGGG I + Sbjct: 348 DGE----ECLGGGTIDDVYKDGT 366 >gi|315640033|ref|ZP_07895158.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus italicus DSM 15952] gi|315484161|gb|EFU74632.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus italicus DSM 15952] Length = 378 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 135/389 (34%), Positives = 201/389 (51%), Gaps = 25/389 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+ + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 7 KDNSNTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKD 63 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 +V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 64 VAKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALD 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY + V D M R +D +DQ+YFL +Q+QL FPLG M Sbjct: 124 LGADYVATGHYAQ----VVRDEDGLTHMLRGVDNNKDQTYFLSQLSQEQLAKTMFPLGGM 179 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A+ L A K DS +CF+ + + + A +G++V L+G++ G+ Sbjct: 180 EKSEVRAIAQRANLATAKKKDSTGVCFIGEKNFKQFLSHYLP--AQKGNMVTLDGEVKGQ 237 Query: 256 HNGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308 H+G++ YTI G G G EP FVV D ++ + VG +L + +I Sbjct: 238 HDGLMYYTIGQRQGLGIGGGGKTQEPWFVVGKDLATNTLYVGQGFHHPALYADHLDASDI 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVF 367 ++ + + FKC K R Q VPV V+ D+ V F++ + GQA VF Sbjct: 298 HFTN----QSGQPEEFKCTAKFRYRQQDVPVTVRLLADNRAEVYFDEPVRAITPGQAVVF 353 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396 Y LGGG+I + + + V + + Sbjct: 354 YDG----MECLGGGLIDRAFQENKVLQYV 378 >gi|21283300|ref|NP_646388.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus MW2] gi|49486454|ref|YP_043675.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus MSSA476] gi|297207658|ref|ZP_06924093.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300911740|ref|ZP_07129183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus TCH70] gi|24638304|sp|Q8NW84|MNMA_STAAW RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|56749706|sp|Q6G8U8|MNMA_STAAS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|21204740|dbj|BAB95436.1| (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Staphylococcus aureus subsp. aureus MW2] gi|49244897|emb|CAG43358.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus MSSA476] gi|296887675|gb|EFH26573.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300885986|gb|EFK81188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus TCH70] Length = 372 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 135/379 (35%), Positives = 204/379 (53%), Gaps = 20/379 (5%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + KD+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D D Sbjct: 2 SNKDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L L Sbjct: 59 IEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R + M R +D +DQ+YFL +QQQL + FP+GD++ Sbjct: 119 GADYVATGHYARIHRH----EDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIE 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A E GL A K DS ICF+ + + + + A GD++ L+G+ +G+H Sbjct: 175 KIEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKH 232 Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +G++ YTIGQR GLG+ G+P FVV + + + V ++L + + +++ Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFVN 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371 ++ + GF+C K R Q VFV+R +D + V F + + GQA VFY D Sbjct: 293 PE--DNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITPGQAVVFYQGD 350 Query: 372 SNEARVLGGGIISGSKRSD 390 LGG I +++ Sbjct: 351 V----CLGGATIDDVFKNE 365 >gi|330958166|gb|EGH58426.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. maculicola str. ES4326] Length = 366 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 124/382 (32%), Positives = 197/382 (51%), Gaps = 26/382 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VC Sbjct: 2 KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + + ++ + + V F Y AG TP P + CNR +KF L LGAD+ Sbjct: 59 DKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R D + + +D +DQSYFL A +Q+ FP+G+++K V Sbjct: 119 IATGHYVRRR-----DTDGHTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPQV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH+G++ Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLM 231 Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +TIGQR+GLG+ +P +V+ D ++ +IVG L + EI W+ Sbjct: 232 YHTIGQRQGLGIGGLKDASDDPWYVLVKDLQNNELIVGQGNDHPWLFSSALVSSEIYWVN 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + K+R Q P +++ DG F+ + V GQ+ VFY + Sbjct: 292 PIDLSSP----RRLTAKVRYRQSDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI 347 Query: 373 NEARVLGGGIISGSKRSDAVEE 394 LGGG+I ++ + ++ Sbjct: 348 ----CLGGGVIEVAEPWTSKDK 365 >gi|257485430|ref|ZP_05639471.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. tabaci ATCC 11528] gi|330987933|gb|EGH86036.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. lachrymans str. M301315] Length = 366 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 126/382 (32%), Positives = 199/382 (52%), Gaps = 26/382 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VC Sbjct: 2 KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + + ++ + + V F Y AG TP P + CNR +KF L LGAD+ Sbjct: 59 DKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K V Sbjct: 119 IATGHYVRRR-----DTDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH+G++ Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLM 231 Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +TIGQR+GLG+ +P +V+ D +++ +IVG L + EI W+ Sbjct: 232 YHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 K K+R Q P +++ DG F+ + V GQ+ VFY + Sbjct: 292 PIDLSSP----RKLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI 347 Query: 373 NEARVLGGGIISGSKRSDAVEE 394 LGGG+I ++ + ++ Sbjct: 348 ----CLGGGVIEIAEPWTSKDK 365 >gi|330875781|gb|EGH09930.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 366 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 126/382 (32%), Positives = 199/382 (52%), Gaps = 26/382 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VC Sbjct: 2 KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + + ++ + + V F Y AG TP P + CNR +KF L LGAD+ Sbjct: 59 DKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K V Sbjct: 119 IATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH+G++ Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLM 231 Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +TIGQR+GLG+ +P +V+ D +++ +IVG L + EI W+ Sbjct: 232 YHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 K K+R Q P +++ DG F+ + V GQ+ VFY + Sbjct: 292 PIDLSSP----RKLTAKVRYRQSDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI 347 Query: 373 NEARVLGGGIISGSKRSDAVEE 394 LGGG+I ++ + ++ Sbjct: 348 ----CLGGGVIEIAEPWTSKDK 365 >gi|228902924|ref|ZP_04067065.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis IBL 4222] gi|228967471|ref|ZP_04128500.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar sotto str. T04001] gi|228792248|gb|EEM39821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar sotto str. T04001] gi|228856708|gb|EEN01227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis IBL 4222] Length = 376 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 138/388 (35%), Positives = 204/388 (52%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 6 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + + Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 295 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + + E FKC K R Q+ V VQ +++ V + ++ + GQA VFY Sbjct: 296 WVSNKVKET----EFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 351 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I RS + L Sbjct: 352 DGD----ECLGGATIDEVYRSGKKLDYL 375 >gi|323137322|ref|ZP_08072400.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylocystis sp. ATCC 49242] gi|322397309|gb|EFX99832.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylocystis sp. ATCC 49242] Length = 412 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 213/387 (55%), Positives = 269/387 (69%), Gaps = 11/387 (2%) Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69 + L L +P D RVVVAMSGGVDSSVVAALLK GYDV+GVTLQLY+ +A+ RKG+CCA Sbjct: 9 DPLILPASPGDTRVVVAMSGGVDSSVVAALLKEQGYDVVGVTLQLYDHGEATHRKGACCA 68 Query: 70 GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 GQD+ DAR V + + H+V DYE RFR VI FA+SYA+GETP+PCV CN+ +KF+DL Sbjct: 69 GQDIQDARAVAARLGIPHFVLDYERRFREKVIDEFAASYASGETPVPCVACNQFIKFADL 128 Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 + LGA VLATGHYI SR DDG+ R + R D RDQSYFLFATT++QL LR Sbjct: 129 FETAKDLGAHVLATGHYISSR----DDGEGGRALYRAKDASRDQSYFLFATTREQLRMLR 184 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 FPLGD K VR++AR GL++ADK DSQDICFV G+Y DVV+R+ + GDIVH++ Sbjct: 185 FPLGDYTKAEVREMARNYGLEVADKPDSQDICFVPSGRYTDVVERLAPDAVVPGDIVHVD 244 Query: 250 GQILGRHNGIINYTIGQRRGLGVAM------GEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 G++LGRH G+++YTIGQRRGLG+ EPLFVV LD + V+VGPRE+LE + Sbjct: 245 GRVLGRHAGVVHYTIGQRRGLGLGASVAGRDAEPLFVVRLDAARAEVVVGPREALETRAV 304 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASG 362 LR++NW+G G F D G ++RS++ PVP + +D V F SE GV+ G Sbjct: 305 ALRDVNWIGSGEFNDMPPQGIDIMARVRSTRPPVPARLIAREDSSATVVFAASEFGVSPG 364 Query: 363 QACVFYTSDSNEARVLGGGIISGSKRS 389 QACVFY + ARVLGGG I+ + + Sbjct: 365 QACVFYDRADDAARVLGGGFIAAVEPA 391 >gi|227890864|ref|ZP_04008669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus salivarius ATCC 11741] gi|227867273|gb|EEJ74694.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus salivarius ATCC 11741] Length = 375 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 132/390 (33%), Positives = 201/390 (51%), Gaps = 25/390 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+ +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + S G C +D D Sbjct: 2 KDKSQIRVVVGMSGGVDSSVSAYLLKQQGYDVVGVFMKNWDDKNDS---GVCTVTEDYQD 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 +V I + +Y ++E+ + + V F Y G TP P + CN+ VKF L Sbjct: 59 VAKVASQIGIPYYSVNFEKEYWDRVFTYFLDEYKDGRTPNPDIMCNKEVKFKAFLDYAMS 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 + AD +A GHY + R D R + R D +DQ+YFL +Q+QL + FP+G + Sbjct: 119 IDADYIAMGHYAQLRR----DEDGRVHLLRGADDNKDQTYFLSQLSQEQLQKVMFPIGHL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL A K DS ICF+ + + + A G++V L+G++ G Sbjct: 175 QKSEVRRIAEEAGLATAKKKDSTGICFIGERNFSKFLGEFLP--AQPGEMVTLDGEVKGN 232 Query: 256 HNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308 H G++NYTIGQR+GLG+ EP FV+ D ++ ++VG E L + + ++ Sbjct: 233 HFGLMNYTIGQRKGLGIGGDGKSNEPWFVIGKDLKTNTLLVGQGYHNEHLYANSLDASKL 292 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366 +++ D D F C K R Q V V+ N+D V V F++ + GQ V Sbjct: 293 SFVDDISDRG---DEFHCTAKFRYRQKDTGVTVKFNEDRTKVEVIFDEPVRAITPGQEVV 349 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396 FY + LG G I + + + + + Sbjct: 350 FYDGE----ECLGSGTIDHAYKESKLLQYV 375 >gi|65321763|ref|ZP_00394722.1| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Bacillus anthracis str. A2012] Length = 376 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 137/383 (35%), Positives = 201/383 (52%), Gaps = 23/383 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 6 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + + Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 295 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + E FKC K R Q+ V VQ +++ V + ++ + GQA VFY Sbjct: 296 WVSNEAKE----KEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 351 Query: 369 TSDSNEARVLGGGIISGSKRSDA 391 D LGG I RS Sbjct: 352 DGD----ECLGGATIDEVYRSGK 370 >gi|330972900|gb|EGH72966.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. aceris str. M302273PT] Length = 366 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 125/382 (32%), Positives = 197/382 (51%), Gaps = 26/382 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VC Sbjct: 2 KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + + ++ + + V F Y AG TP P + CNR +KF L LGAD+ Sbjct: 59 DKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K V Sbjct: 119 IATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH+G++ Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLM 231 Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +TIGQR+GLG+ +P +V+ D ++ +IVG L + EI W+ Sbjct: 232 YHTIGQRQGLGIGGLKDASDDPWYVLVKDLENNELIVGQGNDHPWLFSRALVSSEIYWVN 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + K+R Q P +++ DG F+ + V GQ+ VFY + Sbjct: 292 PIDLSSP----RRLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI 347 Query: 373 NEARVLGGGIISGSKRSDAVEE 394 LGGG+I ++ ++ Sbjct: 348 ----CLGGGVIEIAEPWTTKDK 365 >gi|228917030|ref|ZP_04080590.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228842637|gb|EEM87725.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 376 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 139/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 6 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + + Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 295 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + E FKC K R QD V VQ +++ V + ++ + GQA VFY Sbjct: 296 WVSNEAKE----KEFKCTAKFRYRQDDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 351 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I RS + L Sbjct: 352 DGD----ECLGGATIDEVYRSGKKLDYL 375 >gi|148547054|ref|YP_001267156.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas putida F1] gi|166235073|sp|A5W1G2|MNMA_PSEP1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|148511112|gb|ABQ77972.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas putida F1] Length = 374 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 126/382 (32%), Positives = 197/382 (51%), Gaps = 26/382 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+P RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ D Sbjct: 7 KDPAKTRVIVGMSGGVDSSVSALLLIEQGYQVEGLFMKNWEEDDGTE---YCTAREDLAD 63 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ VCD I + + ++ + + V F Y AG TP P + CNR +KF L Sbjct: 64 AQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALS 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD++ATGHY+R R D + + +D +DQSYFL A Q++ FP+G++ Sbjct: 124 LGADLIATGHYVRRR-----DTGALTELLKGLDPNKDQSYFLHAVGGQEIARTLFPVGEL 178 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + GL A K DS ICF+ + ++ D +K+ A GDI G+++GR Sbjct: 179 EKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGDIETTEGEVIGR 236 Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H+G++ +TIGQR+GLG+ EP +V++ D + ++VG L + + Sbjct: 237 HHGLMYHTIGQRQGLGIGGLKDASDEPWYVLHKDLARNVLVVGQGNEHPWLFSRALLASD 296 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 I W+ + + K+R Q ++R G F++ + V GQ+ VF Sbjct: 297 IFWVNPVD----LGSPRQLTAKVRYRQSDQRCTLERTASGYRAVFDEPQRAVTPGQSVVF 352 Query: 368 YTSDSNEARVLGGGIISGSKRS 389 Y + LGGG+I ++ Sbjct: 353 YDGEV----CLGGGVIEAAEPW 370 >gi|117617943|ref|YP_855954.1| tRNA-specific 2-thiouridylase MnmA [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166234841|sp|A0KI53|MNMA_AERHH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|117559350|gb|ABK36298.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 368 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 123/377 (32%), Positives = 199/377 (52%), Gaps = 27/377 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + ++V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A QD+ DA Sbjct: 3 DNSQIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDTDE---YCSAAQDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L + Sbjct: 60 KAVCDKLGMKLHTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEE 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGA +ATGHY+R DD R + R +D +DQSYFL+ ++ Q+ FP+GD+ Sbjct: 120 LGATYIATGHYVRR-----DDSTGRPRLLRGLDTNKDQSYFLYTLSEAQVGQSLFPVGDL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++ L A K DS ICF+ + K+ D + + A G I ++G+++G Sbjct: 175 EKPEVRRIAEQLDLITAKKKDSTGICFIGERKFKDFLAKFLP--AQPGPIETVDGKVIGE 232 Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV--GPRESLEVHRIYLREI 308 H G++ +T+GQR+GLG+ E +VV + + ++V G L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGRKDATEEAWYVVDKEVERNTLVVAQGEHPRLYSDGLIASQL 292 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVF 367 +W+ + +C VK R Q+ +P +Q DD + V F++ + V GQ+ VF Sbjct: 293 HWVD----RTPIRAPRRCTVKTRYRQEDIPCLIQPIDDETIRVIFDEKQAAVTPGQSAVF 348 Query: 368 YTSDSNEARVLGGGIIS 384 Y + LGGGII Sbjct: 349 YDGEV----CLGGGIIE 361 >gi|26990719|ref|NP_746144.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas putida KT2440] gi|37999625|sp|Q88FR9|MNMA_PSEPK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|24985713|gb|AAN69608.1|AE016594_5 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas putida KT2440] Length = 374 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 127/382 (33%), Positives = 197/382 (51%), Gaps = 26/382 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+P RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ D Sbjct: 7 KDPAKTRVIVGMSGGVDSSVSALLLIEQGYQVEGLFMKNWEEDDGTE---YCTAREDLAD 63 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ VCD I + + ++ + + V F Y AG TP P + CNR +KF L Sbjct: 64 AQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALS 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD++ATGHY+R R D + + +D +DQSYFL A Q++ FP+G++ Sbjct: 124 LGADLIATGHYVRRR-----DTGALTELLKGLDPNKDQSYFLHAVGGQEIARTLFPVGEL 178 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + GL A K DS ICF+ + ++ D +K+ A GDI G+++GR Sbjct: 179 EKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGDIETTEGEVIGR 236 Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H+G++ +TIGQR+GLG+ EP +V++ D + ++VG L + E Sbjct: 237 HHGLMYHTIGQRQGLGIGGLKDASDEPWYVLHKDLARNVLVVGQGNEHPWLFSRALLASE 296 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 I W+ + + K+R Q ++R G F++ + V GQ+ VF Sbjct: 297 IFWVNPVD----LGSPRQLTAKVRYRQSDQRCTLERTASGYRAVFDEPQRAVTPGQSVVF 352 Query: 368 YTSDSNEARVLGGGIISGSKRS 389 Y + LGGG+I ++ Sbjct: 353 YDGEV----CLGGGVIEAAEPW 370 >gi|228910232|ref|ZP_04074050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis IBL 200] gi|228849396|gb|EEM94232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus thuringiensis IBL 200] Length = 376 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 138/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 6 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + + Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 295 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + E FKC K R Q+ V VQ +++ V + ++ + GQA VFY Sbjct: 296 WVSNKAKET----EFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 351 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I RS + L Sbjct: 352 DGD----ECLGGATIDEVYRSAKKLDYL 375 >gi|157150902|ref|YP_001449344.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus gordonii str. Challis substr. CH1] gi|189040513|sp|A8AU84|MNMA_STRGC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|157075696|gb|ABV10379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus gordonii str. Challis substr. CH1] Length = 373 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 133/388 (34%), Positives = 195/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQVKR----DQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + + + A G ++ L G+ +G+H Sbjct: 176 KPEVRSIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ EP FVV D + + + VG ++L + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTKEMPEE----FTMECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGKVCQYV 373 >gi|330965599|gb|EGH65859.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. actinidiae str. M302091] Length = 366 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 126/382 (32%), Positives = 199/382 (52%), Gaps = 26/382 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VC Sbjct: 2 KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + + ++ + + V F Y AG TP P + CNR +KF L LGAD+ Sbjct: 59 DKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K V Sbjct: 119 IATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH+G++ Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLM 231 Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +TIGQR+GLG+ +P +V+ D +++ +IVG L + EI W+ Sbjct: 232 YHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 K K+R Q P +++ DG F+ + V GQ+ VFY + Sbjct: 292 PIDLSSP----RKLTAKVRYRQSDQPCTLEKTTDGYRATFDDPQRAVTPGQSVVFYDGEI 347 Query: 373 NEARVLGGGIISGSKRSDAVEE 394 LGGG+I ++ + ++ Sbjct: 348 ----CLGGGVIEIAEPWTSKDK 365 >gi|319892675|ref|YP_004149550.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Staphylococcus pseudintermedius HKU10-03] gi|317162371|gb|ADV05914.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Staphylococcus pseudintermedius HKU10-03] gi|323464287|gb|ADX76440.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus pseudintermedius ED99] Length = 370 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 136/379 (35%), Positives = 200/379 (52%), Gaps = 22/379 (5%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 ++ RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 2 TNQNTRVVVGMSGGVDSSVTAHLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYNDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L +L Sbjct: 59 IAVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHALKL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R R + +DG M R +D +DQ+YFL T+ QL + FP+GD+ Sbjct: 119 GADYVATGHYARVRHH--EDGSVE--MLRGVDNNKDQTYFLNQLTEAQLSKVMFPIGDID 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ VR++A E L A K DS ICF+ + + + + A G++ LNG++ G+H Sbjct: 175 KQKVREIALEQDLATAKKKDSTGICFIGERNFKTFLSQYLP--AQPGEMRTLNGELKGQH 232 Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 G++ YTIGQR GLG+ G+P FVV + + + V ++L + +++++ Sbjct: 233 GGLMYYTIGQRHGLGIGGDGDPWFVVGKNLEDNILYVEQGFHHDALYSDYLIASDVSFVN 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 + + KC K R Q V V V DD V V F++ + GQA VFY D Sbjct: 293 ----ATDLTEPLKCTAKFRYRQKDVGVTVTAHGDDAVKVTFDEPVRAITPGQAVVFYDGD 348 Query: 372 SNEARVLGGGIISGSKRSD 390 LGG I + D Sbjct: 349 V----CLGGATIDDVYKKD 363 >gi|257870651|ref|ZP_05650304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus gallinarum EG2] gi|257804815|gb|EEV33637.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus gallinarum EG2] Length = 372 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 137/388 (35%), Positives = 201/388 (51%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + ++ RVVV MSGGVDSSV A LLK GYDV+G+ ++ ++ + G C A +D D Sbjct: 2 SNENTRVVVGMSGGVDSSVTALLLKEQGYDVVGIFMKNWDD---TDENGVCTATEDYKDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 59 AKVAAQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R +D +DQ+YFL +Q QL FPLG M+ Sbjct: 119 GADYVATGHYAQ----VETDENGVTHMLRGVDSNKDQTYFLSQLSQAQLSKTMFPLGGME 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS +CF+ + + + A +G++V L+G++ G+H Sbjct: 175 KSEVRAIAERAGLATAKKKDSTGVCFIGEKNFKQFLSNYLP--AKKGNMVTLDGEVKGQH 232 Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 +G++ YTIGQR+GLG+ EP FVV D ++ + VG +L R+ +I+ Sbjct: 233 DGLMYYTIGQRQGLGIGGGGTSQEPWFVVGKDLATNTLYVGQGFHHPALYADRLEASQIH 292 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368 + D FKC K R Q V V V+ D D V F++ + GQA VFY Sbjct: 293 FTTDTDRPS----EFKCTAKFRYRQQDVGVSVRLLDNDRAEVIFDEPVRAITPGQAVVFY 348 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGG+I + + + + Sbjct: 349 DG----MECLGGGLIDAAYQEAKELQYV 372 >gi|325273429|ref|ZP_08139681.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas sp. TJI-51] gi|324101442|gb|EGB99036.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas sp. TJI-51] Length = 374 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 125/382 (32%), Positives = 195/382 (51%), Gaps = 26/382 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+P RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ D Sbjct: 7 KDPAKTRVIVGMSGGVDSSVSALLLIEQGYQVEGLFMKNWEEDDGTE---YCTAREDLAD 63 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ VCD I + + ++ + + V F Y AG TP P + CNR +KF L Sbjct: 64 AQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALS 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD++ATGHY+R R D + + +D +DQSYFL A +++ FP+G++ Sbjct: 124 LGADLIATGHYVRRR-----DTGAVTELLKGLDPNKDQSYFLHAVGGKEIARTLFPVGEL 178 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + GL A K DS ICF+ + ++ D +K+ A G+I G+++GR Sbjct: 179 EKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGNIETTEGEVIGR 236 Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H+G++ +TIGQR+GLG+ EP +V++ D + ++VG L + E Sbjct: 237 HHGLMYHTIGQRQGLGIGGLKDAGDEPWYVLHKDLTRNVLVVGQGNEHPWLFSRALLASE 296 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 I W+ + K+R Q + D G F++ + V GQ+ VF Sbjct: 297 IFWVNSVDLSSP----RQLTAKVRYRQSDQRCTLALTDGGYRAVFDEPQRAVTPGQSVVF 352 Query: 368 YTSDSNEARVLGGGIISGSKRS 389 Y + LGGG+I ++ Sbjct: 353 YDGEV----CLGGGVIEAAEPW 370 >gi|196034345|ref|ZP_03101754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus W] gi|195992887|gb|EDX56846.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus W] Length = 372 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 137/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 2 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 59 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 119 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A++ GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 174 ELKKPQIREMAKKAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 231 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + + Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 291 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + E FKC K R Q+ V VQ +++ V + ++ + GQA VFY Sbjct: 292 WVSNEAKE----KEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 347 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I RS + L Sbjct: 348 DGD----ECLGGATIDEVYRSGKKLDYL 371 >gi|229163345|ref|ZP_04291297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus R309803] gi|228620126|gb|EEK77000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus R309803] Length = 372 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 138/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P++ RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 2 MNKLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 59 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 119 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 174 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 231 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + + Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 291 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + E FKC K R Q V VQ +++ V + ++ + GQA VFY Sbjct: 292 WVSNKAKE----AEFKCTAKFRYRQADNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 347 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I RS + L Sbjct: 348 DGD----ECLGGATIDEVYRSGNKLDYL 371 >gi|307131188|ref|YP_003883204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dickeya dadantii 3937] gi|306528717|gb|ADM98647.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dickeya dadantii 3937] Length = 370 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 123/386 (31%), Positives = 203/386 (52%), Gaps = 29/386 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + ++ C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYRVEGLFMKNWEEDDDTE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGIELHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + D + + R +D +DQSYFL+ + QQL FP+G++ Sbjct: 120 LGADYIATGHYVRRK-----DVDGKSRLLRGLDGNKDQSYFLYTLSHQQLAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254 +K VR++A ++ L A K DS ICF+ + K+ D + R A G I+ + +G+++G Sbjct: 175 EKPQVREIAEQLDLATARKKDSTGICFIGERKFRDFLARYLP--AQPGPILSVDDGKVMG 232 Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 H G++ +T+GQR+GLG+ +P +VV D ++ + V L + + Sbjct: 233 EHQGLMYHTLGQRKGLGIGGVKEGGDDPWYVVDKDVANNVLYVAQGHEHPRLMSVGLIAQ 292 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQAC 365 +++W+ + + +C VK R Q +P + D D + V F++ V GQ+ Sbjct: 293 QLHWVD----REPLTQPLRCAVKTRYRQADIPCLLTPLDADRIEVRFDEPVAAVTPGQSA 348 Query: 366 VFYTSDSNEARVLGGGIISGSKRSDA 391 VFY ++ LGGGII R+ Sbjct: 349 VFYQGEA----CLGGGIIEERLRAAQ 370 >gi|229175070|ref|ZP_04302588.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus MM3] gi|228608438|gb|EEK65742.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus MM3] Length = 376 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 140/388 (36%), Positives = 202/388 (52%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P++ RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 6 MNKLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A E GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 178 ELKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + I Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNIG 295 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368 W+ + E FKC K R Q+ V VQ D + V + ++ + GQA VFY Sbjct: 296 WVSNEAKE----KEFKCTAKFRYRQEDNKVTVQIVDGNTVRILCDEPIRAITPGQAVVFY 351 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I RS + L Sbjct: 352 DGD----ECLGGATIDEVYRSGKKLDYL 375 >gi|28870522|ref|NP_793141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas syringae pv. tomato str. DC3000] gi|37999578|sp|Q87ZR6|MNMA_PSESM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|28853770|gb|AAO56836.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas syringae pv. tomato str. DC3000] Length = 376 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 127/388 (32%), Positives = 200/388 (51%), Gaps = 26/388 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 N + RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ Sbjct: 6 PSNSEMKRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLA 62 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ VCD I + + ++ + + V F Y AG TP P + CNR +KF L Sbjct: 63 DAQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYAL 122 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+ Sbjct: 123 MLGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGE 177 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K VR +A + GL A K DS ICF+ + ++ D +++ A GDI G+++G Sbjct: 178 LEKPQVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGDIKTTEGEVIG 235 Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 RH+G++ +TIGQR+GLG+ +P +V+ D +++ +IVG L + Sbjct: 236 RHSGLMYHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSS 295 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 EI W+ K K+R Q P +++ G F+ + V GQ+ V Sbjct: 296 EIYWVNPIDLSSP----RKLTAKVRYRQSDQPCTLEKTAGGYRATFDDPQRAVTPGQSVV 351 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEE 394 FY + LGGG+I ++ + ++ Sbjct: 352 FYDGEI----CLGGGVIEIAEPWTSKDK 375 >gi|146293329|ref|YP_001183753.1| tRNA-specific 2-thiouridylase MnmA [Shewanella putrefaciens CN-32] gi|166235082|sp|A4Y7M1|MNMA_SHEPC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|145565019|gb|ABP75954.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella putrefaciens CN-32] Length = 372 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 126/385 (32%), Positives = 201/385 (52%), Gaps = 27/385 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ +V+V MSGGVDSSV A LL + GY V G+ ++ + ++ C A +D+ Sbjct: 4 IEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNE---YCAAAEDL 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 61 KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 120 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + L AD +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+ Sbjct: 121 DEILDADYIAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPV 176 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR++A+EMGL DK DS ICF+ + K+ + ++ A G+I G++ Sbjct: 177 GELEKHQVREIAKEMGLITHDKKDSTGICFIGERKFTEFLRTYLP--AQPGNIETPEGEV 234 Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304 +G H G++ +T+GQR+GLG+ +P +VV D + +IV G L + Sbjct: 235 IGTHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMT 294 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363 + +++W+ VDG VK R Q VP + D+ + V F++ V GQ Sbjct: 295 VNQLHWVD----RTGPVDGCHITVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQ 350 Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388 + VFY + LGGGII R Sbjct: 351 SAVFYDGEV----CLGGGIIDQLIR 371 >gi|323350805|ref|ZP_08086464.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis VMC66] gi|322122979|gb|EFX94682.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis VMC66] Length = 373 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 134/388 (34%), Positives = 196/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + N V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWNRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQIKR----DQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + + + A G ++ L G+ +G+H Sbjct: 176 KPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ EP FVV D + + + VG ++L + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTKEMPEE----FTMECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGKVCQYV 373 >gi|269967776|ref|ZP_06181823.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio alginolyticus 40B] gi|269827596|gb|EEZ81883.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio alginolyticus 40B] Length = 430 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 122/380 (32%), Positives = 197/380 (51%), Gaps = 28/380 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA Sbjct: 59 DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 115 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 116 QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 175 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY+R + + M R +D +DQSYFL+ + +Q+ FP+GD+ Sbjct: 176 LDADYIAMGHYVRRSF---PENGEKPQMLRGLDGNKDQSYFLYTLSNEQIARSLFPVGDL 232 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E L A K DS ICF+ + K+ + + R A G+I G+++G+ Sbjct: 233 EKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQ 290 Query: 256 HNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRV--IVG-PRESLEVHRIYL 305 H G++ +T+GQR+GL + +P FV D + + + G L+ + Sbjct: 291 HQGLMYHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLA 350 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQA 364 +++W+ + + D KC VK R Q+ +P + DD + V F++ ++ V GQ+ Sbjct: 351 SQLHWVD----REPIRDVMKCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQS 406 Query: 365 CVFYTSDSNEARVLGGGIIS 384 VFY D LGGGII Sbjct: 407 AVFYKGDV----CLGGGIIE 422 >gi|311029205|ref|ZP_07707295.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase [Bacillus sp. m3-13] Length = 368 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 137/380 (36%), Positives = 203/380 (53%), Gaps = 22/380 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K P+D RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MKKRPEDTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDESGFCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D +V + I + +Y ++E+++ + V F Y +G TP P V CN+ +KF L+ Sbjct: 58 EDVIKVSNQIGIPYYAVNFEKQYWDKVFTYFLEEYKSGRTPNPDVMCNKEIKFKAFLNHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +GAD +ATGHY R ++ + + R D +DQSYFL A +Q+QL FPLG Sbjct: 118 MSIGADYIATGHYARV-----EEKDGQYRLLRGADHNKDQSYFLNALSQKQLSKTMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 + K+ VR++A E GL A K DS ICF+ + + + + A G++ ++G++ Sbjct: 173 HLSKKEVREIAIEAGLATAKKKDSTGICFIGERNFKEFLSGFLP--AQPGEMQTVDGEMK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 G H+G++ YTIGQR+GLG+ GEP FV+ D + +IVG E L + +N Sbjct: 231 GHHDGLMYYTIGQRQGLGIGGSGEPWFVIGKDLKRNVLIVGQGFHNEGLYSEGLEAIGMN 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W+ L F C K+R Q+ V V +DG + F K + + GQA V Y Sbjct: 291 WIKRDL---TFKQEFSCTAKMRYRQEDQEVTVYPQEDGTAKIYFHKRQRAITPGQAVVLY 347 Query: 369 TSDSNEARVLGGGIISGSKR 388 D +GGG I + Sbjct: 348 DGDI----CIGGGTIDRVIK 363 >gi|302185016|ref|ZP_07261689.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. syringae 642] gi|330981378|gb|EGH79481.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 366 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 125/382 (32%), Positives = 199/382 (52%), Gaps = 26/382 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VC Sbjct: 2 KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + + ++ + + V F Y AG TP P + CNR +KF L LGAD+ Sbjct: 59 DKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K V Sbjct: 119 IATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH+G++ Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLM 231 Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +TIGQR+GLG+ +P +V+ D +++ +IVG L + EI W+ Sbjct: 232 YHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + K+R Q P +++ DG F+ + V GQ+ VFY + Sbjct: 292 PIDLSSP----RRLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI 347 Query: 373 NEARVLGGGIISGSKRSDAVEE 394 LGGG+I ++ + ++ Sbjct: 348 ----CLGGGVIEIAEPWTSKDK 365 >gi|261210711|ref|ZP_05925003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio sp. RC341] gi|260840196|gb|EEX66776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio sp. RC341] Length = 371 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 121/378 (32%), Positives = 192/378 (50%), Gaps = 26/378 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA Sbjct: 7 ANSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 63 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD +++ + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 64 QAVCDKLDIPLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY+R + M R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 124 LDADYIAMGHYVRRTF---PQNGEKPQMLRGLDNNKDQSYFLYTLSHEQVARSLFPVGEL 180 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL A K DS ICF+ + K+ D + R A G I G+++G Sbjct: 181 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGE 238 Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307 H G++ +T+GQR+GL + +P +V D + +I L+ H + + Sbjct: 239 HQGLMYHTLGQRKGLHIGGMKESSEQPWYVADKDLKRNVLIAVQGAEHPLLKSHGLVAAQ 298 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACV 366 ++W+ + + +C VK R Q + V DD + V F++ +V V GQ+ V Sbjct: 299 LHWVD----RTPITEPVRCSVKTRYRQSDIACTVVPVGDDRIKVMFDEPQVAVTPGQSAV 354 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 355 FYQGEI----CLGGGIIE 368 >gi|168492409|ref|ZP_02716552.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae CDC0288-04] gi|183573402|gb|EDT93930.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae CDC0288-04] Length = 373 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 135/388 (34%), Positives = 195/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAR----VVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ +G H Sbjct: 176 KPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG +SL + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V + V F + + + GQA VFY Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGEKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373 >gi|221310688|ref|ZP_03592535.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus subtilis subsp. subtilis str. 168] gi|221315011|ref|ZP_03596816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319932|ref|ZP_03601226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus subtilis subsp. subtilis str. JH642] gi|221324213|ref|ZP_03605507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus subtilis subsp. subtilis str. SMY] gi|255767628|ref|NP_390627.3| tRNA-specific 2-thiouridylase MnmA [Bacillus subtilis subsp. subtilis str. 168] gi|254763446|sp|O35020|MNMA_BACSU RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|225185256|emb|CAB14691.3| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Bacillus subtilis subsp. subtilis str. 168] Length = 371 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 138/383 (36%), Positives = 201/383 (52%), Gaps = 22/383 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P+D RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVIRVCNQIGIPYYAVNFEKQYYEKVFQYFLDEYKAGRTPNPDVLCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY R D + M R +D +DQ+YFL T+ L + FP+G Sbjct: 118 LSLGADYLATGHYARV-----DRSGGKVRMLRGIDENKDQTYFLNQLTEDTLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR++A+E L A K DS ICF+ + + + + A GD++ ++G++ Sbjct: 173 ELQKSRVREIAKEAELATATKKDSTGICFIGERNFKTFLSQYLP--AQPGDMMTMDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 GRH+G++ YTIGQR GLG+ GEP F V D + + V L +I I+ Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W+ + + + C K R Q+ V V+ +G V F++ V GQA VFY Sbjct: 291 WVRSDIMKG---EEISCTAKFRYRQEDHKVTVRMTGEGEAEVIFDEQVRAVTPGQAVVFY 347 Query: 369 TSDSNEARVLGGGIISGSKRSDA 391 + LGGG I + Sbjct: 348 DGE----ECLGGGTIDDVYKDGT 366 >gi|205822400|sp|Q030C8|MNMA_LACLS RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 376 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 137/390 (35%), Positives = 194/390 (49%), Gaps = 26/390 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+P RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 4 KSPAQTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 60 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 V D I V +Y ++E+ + + V F + Y AG TP P V CN+ +KF L + Sbjct: 61 VAAVADQIGVPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAME 120 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY + R D M R D +DQ+YFL TQ+QL FPLG + Sbjct: 121 LGADYVATGHYAQVRT----DEDGTVHMLRGADNNKDQTYFLSQLTQEQLKKTMFPLGHL 176 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + GL A K DS ICF+ + + + A G ++ L+G +G Sbjct: 177 EKPEVRRIAEKAGLATAKKKDSTGICFIGEKNFKKFLGEYLP--AQPGKMMTLDGVEMGN 234 Query: 256 HNGIINYTIGQRRGLGVA------MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLR 306 H G++ YTIGQR GLG+ +P FVV D ++ + VG E L + Sbjct: 235 HAGLMYYTIGQRGGLGIGGQHGQLTSDPWFVVGKDLTTNTLYVGQGFHHEHLYSTSLDAS 294 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 ++++ + C K R Q+ V + D V VDF++ + GQA V Sbjct: 295 DLSFTREM----PETFDLHCTAKFRYRQEDTGVTIHVKADKVTVDFDEPVRAITPGQAVV 350 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396 FY + LGG +I + + V + Sbjct: 351 FYDGE----ECLGGAMIDVAYKEQKVMQYQ 376 >gi|169834334|ref|YP_001693654.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae Hungary19A-6] gi|205828976|sp|B1I833|MNMA_STRPI RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|168996836|gb|ACA37448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae Hungary19A-6] Length = 373 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 136/388 (35%), Positives = 196/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS ICF+ + + +++ A G ++ ++G+ +G H Sbjct: 176 KPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKNLLSNYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG +SL + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373 >gi|81241404|gb|ABB62114.1| conserved hypothetical protein [Shigella dysenteriae Sd197] Length = 383 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 126/394 (31%), Positives = 204/394 (51%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 61 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L LGAD +ATGHY+R D + + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + + R Sbjct: 173 LSHEQIAKSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294 A G I+ ++G +G H G++ +T+GQR+GLG+ EP +VV D ++ +IV Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQ 290 Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350 L + ++++W+ + +C VK R Q +P V+ +DD + V Sbjct: 291 GHEHPRLMSIGLIAQQLHWVD----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY + LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 376 >gi|229198523|ref|ZP_04325227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus m1293] gi|228585026|gb|EEK43140.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus m1293] Length = 376 Score = 498 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 138/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 6 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 178 ELKKPQIREMAKEAGLVTAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + + Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 295 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + E FKC K R Q+ V VQ +++ V + ++ + GQA VFY Sbjct: 296 WVSNKAKE----KEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 351 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I RS + L Sbjct: 352 DGD----ECLGGATIDEVYRSGKKLDYL 375 >gi|170722583|ref|YP_001750271.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas putida W619] gi|205816891|sp|B1JBJ1|MNMA_PSEPW RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|169760586|gb|ACA73902.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas putida W619] Length = 374 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 124/382 (32%), Positives = 194/382 (50%), Gaps = 26/382 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+P RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ D Sbjct: 7 KDPAKTRVIVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLAD 63 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ VCD I + + ++ + + V F Y AG TP P + CNR +KF L Sbjct: 64 AQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALS 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD++ATGHY+R R D + + +D +DQSYFL A +++ FP+G++ Sbjct: 124 LGADLIATGHYVRRR-----DTGAVTELLKGLDPNKDQSYFLHAVGGKEIARTLFPVGEL 178 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + GL A K DS ICF+ + ++ D +K+ A G+I G+++GR Sbjct: 179 EKPEVRAIAEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGEIQTTEGEVIGR 236 Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H+G++ +TIGQR+GLG+ EP +V++ D + ++VG L + E Sbjct: 237 HHGLMYHTIGQRQGLGIGGLKDAGDEPWYVLHKDLTRNVLVVGQGNEHPWLFSRALLASE 296 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 I W+ K+R Q + + G F++ + V GQ+ VF Sbjct: 297 IFWVNPIDLSSPRT----LTAKVRYRQSDQRCTLALTESGYRAVFDEPQRAVTPGQSVVF 352 Query: 368 YTSDSNEARVLGGGIISGSKRS 389 Y + LGGG+I ++ Sbjct: 353 YDGEV----CLGGGVIETAEPW 370 >gi|238796003|ref|ZP_04639515.1| tRNA-specific 2-thiouridylase mnmA [Yersinia mollaretii ATCC 43969] gi|238720208|gb|EEQ12012.1| tRNA-specific 2-thiouridylase mnmA [Yersinia mollaretii ATCC 43969] Length = 373 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 125/378 (33%), Positives = 196/378 (51%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + D + + R +D +DQSYFL+ + +QL FP+G++ Sbjct: 120 LGADYIATGHYVRRQ-----DVNGKSRLLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++ L A K DS ICF+ + K+ D + R A G I+ ++GQ +G Sbjct: 175 EKPEVRRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHMGE 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ +P +VV D ++ ++V L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKDGGDDPWYVVDKDVANNILLVAQGHEHPRLMSVGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366 ++W+ + F+C VK R Q +P V DD V V F+ V GQ+ V Sbjct: 293 LHWVD----RQPITAAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDDPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 349 FYQGEV----CLGGGIIE 362 >gi|296333160|ref|ZP_06875613.1| tRNA-specific 2-thiouridylase MnmA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675334|ref|YP_003867006.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Bacillus subtilis subsp. spizizenii str. W23] gi|296149358|gb|EFG90254.1| tRNA-specific 2-thiouridylase MnmA [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413578|gb|ADM38697.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Bacillus subtilis subsp. spizizenii str. W23] Length = 371 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 138/383 (36%), Positives = 201/383 (52%), Gaps = 22/383 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P+D RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVIRVCNQIGIPYYAVNFEKQYYEKVFQYFLDEYKAGRTPNPDVLCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY R D + M R +D +DQ+YFL T+ L + FP+G Sbjct: 118 LSLGADYLATGHYARV-----DRSGGKVRMLRGIDENKDQTYFLNQLTEDTLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR++A+E L A K DS ICF+ + + + + A GD++ ++G++ Sbjct: 173 ELQKSRVREIAKEADLATATKKDSTGICFIGERNFKTFLSQYLP--AQPGDMMTMDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 GRH+G++ YTIGQR GLG+ GEP F V D + + V L +I I+ Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W+ + + C K R Q+ V V+ +G V F++ V GQA VFY Sbjct: 291 WVRSDIMKG---QEIACTAKFRYRQEDHKVTVRMTGEGEAEVIFDEQVRAVTPGQAVVFY 347 Query: 369 TSDSNEARVLGGGIISGSKRSDA 391 + LGGG I + + Sbjct: 348 DGE----ECLGGGTIDDVYKDET 366 >gi|145298399|ref|YP_001141240.1| tRNA-specific 2-thiouridylase MnmA [Aeromonas salmonicida subsp. salmonicida A449] gi|166234842|sp|A4SKS0|MNMA_AERS4 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|142851171|gb|ABO89492.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Aeromonas salmonicida subsp. salmonicida A449] Length = 368 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 122/377 (32%), Positives = 198/377 (52%), Gaps = 27/377 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + ++V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A QD+ DA Sbjct: 3 DNSQIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDTDE---YCSASQDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L + Sbjct: 60 KAVCDKLGMKLHTINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEE 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGA +ATGHY+R DD + R +D +DQSYFL+ +++Q+ FP+GD+ Sbjct: 120 LGATYIATGHYVRR-----DDSTGHPRLLRGLDSNKDQSYFLYTLSEKQVGQSLFPVGDL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++ L A K DS ICF+ + K+ D + + A G I ++G+++G Sbjct: 175 EKPEVRRIAEQLDLITAKKKDSTGICFIGERKFKDFLAKFLP--AQPGPIETVDGKVIGE 232 Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV--GPRESLEVHRIYLREI 308 H G++ +T+GQR+GLG+ E +VV + + ++V G L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGRKDATEEAWYVVDKEVERNTLVVAQGEHPRLYSDGLIASQL 292 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVF 367 +W+ + +C VK R Q +P +Q DD + V F++ + V GQ+ VF Sbjct: 293 HWVD----RTPIRAPRRCTVKTRYRQQDIPCLIQPIDDETIRVIFDEKQAAVTPGQSAVF 348 Query: 368 YTSDSNEARVLGGGIIS 384 Y + LGGGII Sbjct: 349 YDGEV----CLGGGIIE 361 >gi|237809068|ref|YP_002893508.1| tRNA-specific 2-thiouridylase MnmA [Tolumonas auensis DSM 9187] gi|259495840|sp|C4L952|MNMA_TOLAT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|237501329|gb|ACQ93922.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Tolumonas auensis DSM 9187] Length = 369 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 126/378 (33%), Positives = 199/378 (52%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N ++V+V MSGGVDSSV A LL++ GY V G+ ++ + + + C A D+ DA Sbjct: 3 NNSQIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDSDE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGIKLHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R DD + R +D +DQSYFL+ + +Q+ FP+GD+ Sbjct: 120 LGADYIATGHYVRR-----DDSTGHPRLLRGLDNNKDQSYFLYTLSSEQIAQSLFPVGDL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++GL A K DS ICF+ + K+ + + R A G I ++G+++G Sbjct: 175 EKPQVRAIAEQLGLATAKKKDSTGICFIGERKFTEFLGRYLP--AQPGVIETVDGKVIGE 232 Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ P +VV D + +IV L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGLKDGDENPWYVVDKDVARNVLIVAQGHDHPRLFSDGLIAKQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366 ++W+ + + F C VK R Q +P V+ +DD + V F + V GQ+ V Sbjct: 293 LDWVDRQVRR----EPFDCVVKTRYRQQDIPCHVEPLDDDTIKVTFASPQAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 349 FYLGE----ECLGGGIIE 362 >gi|146282652|ref|YP_001172805.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas stutzeri A1501] gi|166235074|sp|A4VLW2|MNMA_PSEU5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|145570857|gb|ABP79963.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas stutzeri A1501] Length = 375 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 129/381 (33%), Positives = 197/381 (51%), Gaps = 26/381 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 P+ RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA Sbjct: 8 APEKTRVIVGMSGGVDSSVSALLLLEQGYQVEGLFMKNWEEDDGTE---YCTAKEDLADA 64 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + VCD I + + ++ + + V F + Y AG TP P + CNR +KF L L Sbjct: 65 QAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALML 124 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD++ATGHY+R R D R + + +D +DQSYFL A +QL FP+G+++ Sbjct: 125 GADLIATGHYVRRR-----DRDGRSELLKGLDPNKDQSYFLHAVGGEQLAKTLFPVGELE 179 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A + L A K DS ICF+ + ++ D +K+ A G+I ++G+++GRH Sbjct: 180 KPEVRAIAEKHSLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGNIEAVDGEVIGRH 237 Query: 257 NGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 +G++ +TIGQR+GLG+ EP +V+ D + +IVG L + EI Sbjct: 238 HGLMYHTIGQRQGLGIGGLKDASDEPWYVLSKDLQRNVLIVGQGNDHPWLFSRALLASEI 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 W+ K K+R Q +++ DG FE + V GQ+ VFY Sbjct: 298 YWVNPVDLS----APLKLTAKVRYRQSDQACTLEQTSDGYRAVFEVPQRAVTPGQSVVFY 353 Query: 369 TSDSNEARVLGGGIISGSKRS 389 + LGGG+I ++ Sbjct: 354 DGEV----CLGGGVIEQAEPW 370 >gi|312961679|ref|ZP_07776177.1| tRNA-specific 2-thiouridylase [Pseudomonas fluorescens WH6] gi|311283938|gb|EFQ62521.1| tRNA-specific 2-thiouridylase [Pseudomonas fluorescens WH6] Length = 374 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 125/383 (32%), Positives = 197/383 (51%), Gaps = 26/383 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 + + RV+V MSGGVDSSV A LL GY+V G+ ++ + ++ C A D+ Sbjct: 6 PSDTQKKRVIVGMSGGVDSSVSAVLLMEQGYEVEGLFMKNWEEDDGTE---YCTAMDDLA 62 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ VCD I + + ++ + + V F + Y AG TP P + CNR +KF L Sbjct: 63 DAQAVCDKIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYAM 122 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+ Sbjct: 123 MLGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIAKTLFPVGE 177 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K VR +A + GL A K DS ICF+ + ++ D +K+ A G+I G+++G Sbjct: 178 LEKPEVRRIAEQHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGEIKTTEGEVIG 235 Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 RH+G++ +TIGQR+GLG+ EP +V+ D ++ ++VG L + Sbjct: 236 RHHGLMYHTIGQRQGLGIGGLKDAGEEPWYVLVKDLENNVLVVGQGNEHPLLFSGALLAS 295 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 EI W+ + K+R Q P +++ G F+ + V GQ+ V Sbjct: 296 EIYWVNPIDLSVP----RRLTAKVRYRQSDQPCTLEKTASGYRATFDDPQRAVTPGQSVV 351 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 FY + LGGG+I ++ Sbjct: 352 FYDGEI----CLGGGVIEVAEPW 370 >gi|22538278|ref|NP_689129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae 2603V/R] gi|25012138|ref|NP_736533.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus agalactiae NEM316] gi|76798859|ref|ZP_00781068.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae 18RS21] gi|77406508|ref|ZP_00783561.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae H36B] gi|77408912|ref|ZP_00785637.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae COH1] gi|54039756|sp|P66979|MNMA_STRA5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|54042260|sp|P66978|MNMA_STRA3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|22535193|gb|AAN01002.1|AE014289_2 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae 2603V/R] gi|24413682|emb|CAD47762.1| Unknown [Streptococcus agalactiae NEM316] gi|76585782|gb|EAO62331.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae 18RS21] gi|77172503|gb|EAO75647.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae COH1] gi|77174880|gb|EAO77696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae H36B] Length = 373 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 140/388 (36%), Positives = 200/388 (51%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + ++RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 3 DNSNIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQ----VTRDENGIVHMLRGADNNKDQTYFLSQLSQEQLQKTLFPLGHLQ 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A E GL A K DS ICF+ + + D + + A G ++ ++G+ +G H Sbjct: 176 KPEVRRIAEEAGLATAKKKDSTGICFIGEKNFKDFLGQYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ +P FVV D + + + VG +SL + EI Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNKPWFVVGKDLSKNILYVGQGFYHDSLMSTSLTASEI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E +C K R Q V V + V F+ + + GQA VFY Sbjct: 294 HFTRDMPNEFK----LECTAKFRYRQPDSKVTVYVKGNQARVVFDDLQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 NE LGGG+I + R D + + + Sbjct: 350 ----NEQECLGGGMIDQAYRDDKICQYI 373 >gi|78043170|ref|YP_361010.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Carboxydothermus hydrogenoformans Z-2901] gi|123575599|sp|Q3AA24|MNMA_CARHZ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|77995285|gb|ABB14184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Carboxydothermus hydrogenoformans Z-2901] Length = 365 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 145/368 (39%), Positives = 208/368 (56%), Gaps = 14/368 (3%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDARR 78 +V+VAMSGGVDSSV AALL GY+V+GVT+Q+++ + + CC+ V DARR Sbjct: 7 KKVLVAMSGGVDSSVTAALLLEQGYEVVGVTMQIWDPKIEVIGEEYVGCCSIYAVNDARR 66 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + +YV ++ E F VI F Y G TP PC+ CNR +KF LL LG Sbjct: 67 VADRLGIPYYVLNFRELFERKVIDYFTEEYLRGRTPNPCIACNRYIKFDALLKKALSLGM 126 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R V D + + R +D ++DQ+Y L+ TQ L L PLG+ KE Sbjct: 127 DYMATGHYAR---VVYKDDIGKYGLFRGVDRKKDQTYVLYNLTQDMLRRLLLPLGEYTKE 183 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR+LAR+ L ADK +SQ+ICFV Y +K G+ V +NG++LG+H G Sbjct: 184 QVRELARKYNLVTADKPESQEICFVPDNDYRKFLKERRGEEIKPGNFVDVNGRVLGQHQG 243 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 YTIGQR+GLG+A+G+P +VV + ++ V++G + + ++N+L + D Sbjct: 244 YPYYTIGQRKGLGLALGKPYYVVDIRPETNEVVIGEASEIFSPGLIASDLNFL----WFD 299 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + F+ +IR + P P V+R D V V F + + + GQA VFY D + Sbjct: 300 EIPERFEAQAQIRYNAKPQPAVVERIGKDKVKVVFNEPQRAITPGQAVVFYRGD----EL 355 Query: 378 LGGGIISG 385 LGGG I Sbjct: 356 LGGGTIEK 363 >gi|330889667|gb|EGH22328.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. mori str. 301020] Length = 366 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 126/382 (32%), Positives = 199/382 (52%), Gaps = 26/382 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VC Sbjct: 2 KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + + ++ + + V F Y AG TP P + CNR +KF L LGAD+ Sbjct: 59 DKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K V Sbjct: 119 IATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH+G++ Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLM 231 Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +TIGQR+GLG+ +P +V+ D +++ +IVG L + EI W+ Sbjct: 232 YHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 K K+R Q P +++ DG F+ + V GQ+ VFY + Sbjct: 292 PIDLSSP----RKLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI 347 Query: 373 NEARVLGGGIISGSKRSDAVEE 394 LGGG+I ++ + ++ Sbjct: 348 ----CLGGGVIEIAEPWTSKDK 365 >gi|304394517|ref|ZP_07376438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ahrensia sp. R2A130] gi|303293427|gb|EFL87806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ahrensia sp. R2A130] Length = 406 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 215/397 (54%), Positives = 287/397 (72%), Gaps = 4/397 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSL DK P D RVVVAMSGGVDSSVVA LLK GY+V+G+TLQLY+ A ++KG+CC Sbjct: 3 LNSLGFDKAPADTRVVVAMSGGVDSSVVACLLKEQGYEVLGMTLQLYDHGAAVQKKGACC 62 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DARRV + + HYV DYE++FR VI PFA +Y GETP+PCV CN+TVKFSD Sbjct: 63 AGQDIHDARRVSEQMGFPHYVLDYEQKFREQVIDPFAKAYINGETPIPCVACNQTVKFSD 122 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGK-RRRIMCRPMDLERDQSYFLFATTQQQLCD 187 LL+ R+LGAD LATGHYI S+ GDDG + R + RP D ++DQSYFLFATTQ+QL Sbjct: 123 LLTTARELGADCLATGHYIISKP--GDDGPLKNRQLFRPADADKDQSYFLFATTQEQLDF 180 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 LRFPLGD+ K R++A+EM L +A+KSDSQDICFV QGKY D++ +I + GDIVH Sbjct: 181 LRFPLGDVPKSRTREMAQEMDLIVAEKSDSQDICFVPQGKYADIIAKIRPDAGVAGDIVH 240 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 L+G++LGRH+GI N+TIGQRRG+G+A G+P++V+ +D ++ V VGPRE+L RI LR+ Sbjct: 241 LDGRVLGRHDGIFNFTIGQRRGIGIATGDPVYVISIDAKTATVTVGPREALATRRIALRD 300 Query: 308 INWLGDGLFEDAV-VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 +NWLGD EDAV +G V++RS++ P P + D ++ E G++ GQACV Sbjct: 301 VNWLGDETLEDAVSEEGIDLHVRVRSTRPPRPARLTLEDGTAFITLTDGEDGISPGQACV 360 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403 FY ++ + RVLGGG I+ + + ++ ++ + Sbjct: 361 FYVDENPQTRVLGGGWIAKTWSAAGAVDAAVTAPPSQ 397 >gi|152969695|ref|YP_001334804.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954544|gb|ABR76574.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 388 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 124/394 (31%), Positives = 203/394 (51%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 ++ A++ N + + +V+V MSGGVDSSV A LL + GY V G+ ++ + Sbjct: 6 VLEYAASKFNVASISMSESQKKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDG 65 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + C Sbjct: 66 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILC 122 Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L LGAD +ATGHY+R D + + R +D +DQSYFL+ Sbjct: 123 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSQLLRGLDGNKDQSYFLYT 177 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR +A E+ L A K DS ICF+ + K+ D + R Sbjct: 178 LSHEQIAQSLFPVGELEKPQVRKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP-- 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP 294 A G I+ ++G+ +G H G++ +T+GQR+GLG+ +P +VV D ++ +IV Sbjct: 236 AQPGKILTVDGEEIGTHQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQ 295 Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350 L + ++++W+ + + +C VK R Q +P V ++D + V Sbjct: 296 GHDHPRLMSVGLIAQQLHWVN----REPLQGTLRCTVKTRYRQTDIPCTVTALDEDRIEV 351 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY + LGGGII Sbjct: 352 RFDEPVAAVTPGQSAVFYLGEV----CLGGGIIE 381 >gi|321312277|ref|YP_004204564.1| tRNA-specific 2-thiouridylase MnmA [Bacillus subtilis BSn5] gi|291485158|dbj|BAI86233.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Bacillus subtilis subsp. natto BEST195] gi|320018551|gb|ADV93537.1| tRNA-specific 2-thiouridylase MnmA [Bacillus subtilis BSn5] Length = 371 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 138/383 (36%), Positives = 201/383 (52%), Gaps = 22/383 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P+D RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MEKRPEDTRVVVGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVIRVCNQIGIPYYAVNFEKQYYEKVFQYFLDEYKAGRTPNPDVLCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY R D + M R +D +DQ+YFL T+ L + FP+G Sbjct: 118 LSLGADYLATGHYARV-----DRSGEKVRMLRGIDENKDQTYFLNQLTEDTLSKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR++A+E L A K DS ICF+ + + + + A GD++ ++G++ Sbjct: 173 ELQKSRVREIAKEAELATATKKDSTGICFIGERNFKTFLSQYLP--AQPGDMMTMDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 GRH+G++ YTIGQR GLG+ GEP F V D + + V L +I I+ Sbjct: 231 GRHDGLMYYTIGQRHGLGIGGSGEPWFAVGKDLEKNILYVDQGFHNPLLYSDKITATNIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W+ + + + C K R Q+ V V+ +G V F++ V GQA VFY Sbjct: 291 WVRSDIMKG---EEISCTAKFRYRQEDHKVTVRMTGEGEAEVIFDEQVRAVTPGQAVVFY 347 Query: 369 TSDSNEARVLGGGIISGSKRSDA 391 + LGGG I + Sbjct: 348 DGE----ECLGGGTIDDVYKDGT 366 >gi|262043152|ref|ZP_06016290.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039540|gb|EEW40673.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 388 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 124/394 (31%), Positives = 203/394 (51%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 ++ A++ N + + +V+V MSGGVDSSV A LL + GY V G+ ++ + Sbjct: 6 VLEYAASKFNVASISMSESQKKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDG 65 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + C Sbjct: 66 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILC 122 Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L LGAD +ATGHY+R D + + R +D +DQSYFL+ Sbjct: 123 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSQLLRGLDGNKDQSYFLYT 177 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR +A E+ L A K DS ICF+ + K+ D + R Sbjct: 178 LSHEQIAQSLFPVGELEKPQVRKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP-- 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP 294 A G I+ ++G+ +G H G++ +T+GQR+GLG+ +P +VV D ++ +IV Sbjct: 236 AQPGKILTVDGEEIGTHQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQ 295 Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350 L + ++++W+ + + +C VK R Q +P V ++D + V Sbjct: 296 GHDHPRLMSVGLIAQQLHWVN----REPLQGTLRCTVKTRYRQTDIPCTVTALDEDRIEV 351 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY + LGGGII Sbjct: 352 RFDEPVAAVTPGQSAVFYLGEV----CLGGGIIE 381 >gi|253688256|ref|YP_003017446.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259495833|sp|C6DFW7|MNMA_PECCP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|251754834|gb|ACT12910.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 368 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 124/379 (32%), Positives = 195/379 (51%), Gaps = 29/379 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + ++ C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYHVEGLFMKNWEEDDDTE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R D + + R MD +DQSYFL+ + +Q+ FP+G++ Sbjct: 120 LGADYIATGHYVRRH-----DVDGKSRLLRGMDGNKDQSYFLYTLSHEQIAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI-LG 254 +K VR +A E+ L A K DS ICF+ + K+ D + R A G I+ ++ +G Sbjct: 175 EKPQVRKIAEELELATAKKKDSTGICFIGERKFTDFLARYLP--AQPGPILSVDDNKPMG 232 Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 +H G++ +T+GQR+GLG+ +P +VV D ++ + V L H + + Sbjct: 233 QHQGLMYHTLGQRKGLGIGGVKDGGEDPWYVVDKDVANNILYVAQGHEHPRLMSHGLIAQ 292 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365 +++W+ + +C VK R Q +P V DD + V F++ V GQ+ Sbjct: 293 QLHWVD----RQPLTAELRCTVKTRYRQADIPCTVTPLGDDRITVRFDEPVAAVTPGQSA 348 Query: 366 VFYTSDSNEARVLGGGIIS 384 VFY D LGGGII Sbjct: 349 VFYLDDV----CLGGGIIE 363 >gi|116492933|ref|YP_804668.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, PP-loop ATPase [Pediococcus pentosaceus ATCC 25745] gi|122265603|sp|Q03EZ6|MNMA_PEDPA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|116103083|gb|ABJ68226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pediococcus pentosaceus ATCC 25745] Length = 377 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 136/384 (35%), Positives = 197/384 (51%), Gaps = 24/384 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSVVA LLK+ GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVVAYLLKQQGYDVVGVFMKNWDD---TDENGYCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F Y G TP P V CN +KF L L Sbjct: 60 AKVAAKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPNPDVICNNEIKFKAFLDYAISL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D + + R D +DQ+YFL + +QL + FPLG M Sbjct: 120 GADYVATGHYAQ----VERDENGHQHLLRATDSNKDQTYFLSQLSAEQLDRVMFPLGGMI 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A E GL + DK DS ICF+ + + + + A G ++ L+G++ G H Sbjct: 176 KPEVRKVAEEAGLSVYDKKDSVGICFIGEKNFREFLGNYLP--AKAGKMMTLDGEVKGEH 233 Query: 257 NGIINYTIGQRRGLGVAMG----EPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G++ YTIGQRRGLG+ G EP FVV D + + + VG L + +++ Sbjct: 234 AGLMYYTIGQRRGLGIGGGSKNNEPWFVVGKDLSKNILYVGQGFENSHLYAASLDASDMH 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVF 367 ++ + F+C K R VPV V ++D V VDF+ + GQA V Sbjct: 294 FVN--KLGEERGRDFRCTAKFRYRAQDVPVTVHFSEDFSKVTVDFDDPARAITPGQALVL 351 Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391 Y + +GGGII + S+ Sbjct: 352 YDGE----ECIGGGIIDAAYNSEK 371 >gi|319426629|gb|ADV54703.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella putrefaciens 200] Length = 372 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 126/385 (32%), Positives = 200/385 (51%), Gaps = 27/385 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ +V+V MSGGVDSSV A LL + GY V G+ ++ + ++ C A +D+ Sbjct: 4 IEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNE---YCAAAEDL 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 61 KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 120 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + L AD +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+ Sbjct: 121 DEILDADYIAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPV 176 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR++A+EMGL DK DS ICF+ + K+ + + A G+I G++ Sbjct: 177 GELEKHQVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEV 234 Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304 +G H G++ +T+GQR+GLG+ +P +VV D + +IV G L + Sbjct: 235 IGTHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMT 294 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363 + +++W+ VDG VK R Q VP + D+ + V F++ V GQ Sbjct: 295 VNQLHWVD----RTGPVDGCHITVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQ 350 Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388 + VFY + LGGGII R Sbjct: 351 SAVFYDGEV----CLGGGIIDQLIR 371 >gi|196044752|ref|ZP_03111986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus 03BB108] gi|196024240|gb|EDX62913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus 03BB108] Length = 372 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 138/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 2 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 58 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 59 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 118 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 119 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 174 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 231 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + + Sbjct: 232 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 291 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + E FKC K R Q+ V VQ +++ V + ++ + GQA VFY Sbjct: 292 WVSNEAKE----KEFKCTAKFRYRQEDNKVSVQIVDENTVRILCDEPIRAITPGQAVVFY 347 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I RS + L Sbjct: 348 DGD----ECLGGATIDEVYRSGKKLDYL 371 >gi|262039106|ref|ZP_06012439.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Leptotrichia goodfellowii F0264] gi|261746895|gb|EEY34401.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Leptotrichia goodfellowii F0264] Length = 365 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 125/378 (33%), Positives = 201/378 (53%), Gaps = 22/378 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +VV+ MSGGVDSSV A LLK GYDVIGV ++ + + + G C + +D D Sbjct: 2 RNKKVVLGMSGGVDSSVAAILLKEQGYDVIGVFMKNWEEKDDN---GVCMSEEDYKDVVA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + +Y ++ + + + V F Y G TP P V CN+ +KF L ++GA Sbjct: 59 VAEQLEIPYYSVNFVKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDYAMKIGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R ++ DGK + +M R +D +DQ+YFL Q+QL + FP+G+ K Sbjct: 119 DHVATGHYARI-IHEEKDGKIKSVMLRGIDDNKDQTYFLCQLNQKQLEKVLFPIGEYTKP 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A + L A K DS ICF+ + + + + + A G+IV G LG+HNG Sbjct: 178 QIREIAEKYNLKTAKKKDSTGICFIGERDFNEFLSKYLP--AKTGNIVDTKGNTLGKHNG 235 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV--GPRESLEVHRIYLREINWL 311 ++ YTIGQR+G+G+ GEP FVV + +++ +IV G L + + N++ Sbjct: 236 LMYYTIGQRKGIGIGNTKEGTGEPWFVVDKNLDTNELIVTQGDNSVLYSKGLIATDFNFI 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTS 370 +D + +C VK R Q + + ND+ + F++ + + GQ V Y Sbjct: 296 N----KDELQFPLECTVKFRYRQKDAGAVINKLNDNEYEIIFDEPQKAITLGQIAVVYKG 351 Query: 371 DSNEARVLGGGIISGSKR 388 + LGGG+I + Sbjct: 352 E----ECLGGGVIDKVIK 365 >gi|332162070|ref|YP_004298647.1| tRNA-specific 2-thiouridylase MnmA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666300|gb|ADZ42944.1| tRNA-specific 2-thiouridylase MnmA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330860067|emb|CBX70393.1| tRNA-specific 2-thiouridylase mnmA [Yersinia enterocolitica W22703] Length = 373 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 126/378 (33%), Positives = 198/378 (52%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + D + + R +D +DQSYFL+ + +QL FP+G++ Sbjct: 120 LGADYIATGHYVRRQ-----DVNGKSRLLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++ L A K DS ICF+ + K+ D + R A G I+ ++GQ +G Sbjct: 175 EKPEVRRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHVGE 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ +P +VV D ++ ++V L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGGDDPWYVVDKDVANNILLVAQGHEHPRLMSVGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366 ++W+ + V F+C VK R Q +P V DD V V F++ V GQ+ V Sbjct: 293 LHWVD----REPVTAAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDEPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 349 FYQGEV----CLGGGIIE 362 >gi|300716270|ref|YP_003741073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erwinia billingiae Eb661] gi|299062106|emb|CAX59222.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erwinia billingiae Eb661] Length = 367 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 122/377 (32%), Positives = 195/377 (51%), Gaps = 28/377 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A +D+ DA+ Sbjct: 4 SQKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAEDLADAQA 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLG 137 VCD + + + ++ + + V F Y AG TP P + CN+ +KF L LG Sbjct: 61 VCDKLGIYLHTVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLG 120 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY+R + D + + R +D +DQSYFL+ +Q+ FP+G++ K Sbjct: 121 ADFIATGHYVRRQ-----DVDGKSRLLRGLDDNKDQSYFLYTLGHEQIAQSLFPVGELAK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR +A E+ L A K DS ICF+ + K+ D + R A G I++ G+++G H Sbjct: 176 PDVRRIAEELELITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPILNAEGEVVGEHQ 233 Query: 258 GIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G++ +T+GQR+GLG+ EP +VV D ++ ++V L + ++++ Sbjct: 234 GLMYHTLGQRKGLGIGGTKAGSEEPWYVVDKDVANNILVVAQGHEHPRLMSVGLVAQQLH 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368 W+ + + +C VK R Q +P V +D + V F++ V GQ+ VFY Sbjct: 294 WVD----REILTAPLRCTVKTRYRQADIPCTVTPLGEDRIEVRFDEPVAAVTPGQSAVFY 349 Query: 369 TSDSNEARVLGGGIISG 385 + LGGGII Sbjct: 350 LDEI----CLGGGIIEA 362 >gi|15900060|ref|NP_344664.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae TIGR4] gi|111656982|ref|ZP_01407790.1| hypothetical protein SpneT_02001784 [Streptococcus pneumoniae TIGR4] gi|225860166|ref|YP_002741675.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae Taiwan19F-14] gi|298229174|ref|ZP_06962855.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255779|ref|ZP_06979365.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501928|ref|YP_003723868.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|24638327|sp|Q97T38|MNMA_STRPN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|254811468|sp|C1CP03|MNMA_STRZT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|14971585|gb|AAK74304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae TIGR4] gi|225726555|gb|ACO22406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae Taiwan19F-14] gi|298237523|gb|ADI68654.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae TCH8431/19A] gi|327390539|gb|EGE88879.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae GA04375] Length = 373 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 135/388 (34%), Positives = 195/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ +G H Sbjct: 176 KPEVRRLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG +SL + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V + V F + + + GQA VFY Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGEKTEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373 >gi|77412483|ref|ZP_00788784.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae CJB111] gi|77161459|gb|EAO72469.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae CJB111] Length = 373 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 140/388 (36%), Positives = 201/388 (51%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + ++RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 3 DNSNIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQ----VTRDKNGIVHMLRGVDNNKDQTYFLSQLSQEQLQKTLFPLGHLQ 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A E GL A K DS ICF+ + + D + + A G ++ ++G+ +G H Sbjct: 176 KPEVRRIAEEAGLATAKKKDSTGICFIGEKNFKDFLGQYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ +P FVV D + + + VG +SL + EI Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNKPWFVVGKDLSKNILYVGQGFYHDSLMSTSLTASEI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E +C K R Q V V + V F+ + + GQA VFY Sbjct: 294 HFTRDMPNEFK----LECTAKFRYRQPDSKVTVYVKGNQARVVFDDLQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 NE LGGG+I + R D + + + Sbjct: 350 ----NEQECLGGGMIDQAYRDDKICQYI 373 >gi|227111563|ref|ZP_03825219.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227327064|ref|ZP_03831088.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 368 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 123/379 (32%), Positives = 195/379 (51%), Gaps = 29/379 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + ++ C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYHVEGLFMKNWEEDDDTE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R D + + R MD +DQSYFL+ + +Q+ FP+G++ Sbjct: 120 LGADYIATGHYVRRH-----DVDGKSRLLRGMDGNKDQSYFLYTLSHEQIAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI-LG 254 +K VR +A E+ L A K DS ICF+ + K+ D + R A G I+ ++ +G Sbjct: 175 EKPQVRKIAEELELATAKKKDSTGICFIGERKFTDFLARYLP--AQPGPILSVDDNKPMG 232 Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 +H G++ +T+GQR+GLG+ +P +VV D ++ + V L + + + Sbjct: 233 QHQGLMYHTLGQRKGLGIGGVKDGGEDPWYVVDKDVANNILYVAQGHEHPRLMSYGLIAQ 292 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365 +++W+ + +C VK R Q +P V DD + V F++ V GQ+ Sbjct: 293 QLHWVD----RQPLTAELRCTVKTRYRQADIPCTVTPLGDDRITVRFDEPVAAVTPGQSA 348 Query: 366 VFYTSDSNEARVLGGGIIS 384 VFY D LGGGII Sbjct: 349 VFYLDDV----CLGGGIIE 363 >gi|12514787|gb|AAG55959.1|AE005329_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] gi|13361069|dbj|BAB35028.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|209772838|gb|ACI84731.1| hypothetical protein ECs1605 [Escherichia coli] gi|209772840|gb|ACI84732.1| hypothetical protein ECs1605 [Escherichia coli] gi|209772842|gb|ACI84733.1| hypothetical protein ECs1605 [Escherichia coli] gi|209772844|gb|ACI84734.1| hypothetical protein ECs1605 [Escherichia coli] gi|209772846|gb|ACI84735.1| hypothetical protein ECs1605 [Escherichia coli] Length = 383 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 126/394 (31%), Positives = 204/394 (51%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 61 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L LGAD +ATGHY+R D + + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + + R Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294 A G I+ ++G +G H G++ +T+GQR+GLG+ EP +VV D ++ +IV Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQ 290 Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350 L + ++++W+ + +C VK R Q +P V+ +DD + V Sbjct: 291 GHEHPRLMSVGLIAQQLHWVD----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY + LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 376 >gi|222151508|ref|YP_002560664.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Macrococcus caseolyticus JCSC5402] gi|222120633|dbj|BAH17968.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Macrococcus caseolyticus JCSC5402] Length = 371 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 129/387 (33%), Positives = 201/387 (51%), Gaps = 23/387 (5%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +VVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 2 DNSKTKVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYEDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RVC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L +L Sbjct: 59 IRVCNQIGIPYYAVNFEQEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHAVKL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + R +DG M R +D +DQ+YFL TQ+QL + FPLG ++ Sbjct: 119 GADYVATGHYAQIRR--SEDG---VEMLRGVDNNKDQTYFLNQLTQEQLSRVMFPLGHLQ 173 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A + L A K DS ICF+ + + + + A G++ L+G+ +G H Sbjct: 174 KPEVREIALKHDLATAKKKDSTGICFIGERNFKEFLSGYLP--AQNGEMQTLDGKPMGTH 231 Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +G++ YTIGQR GLG+ G+P FVV + + + V ++L + +++++ Sbjct: 232 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFDHDALYSDYLIASDVSFVN 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371 + +C K R Q V V++ DD + V + + + GQA VFY + Sbjct: 292 PVD----LTTPLECTAKFRYRQRDTKVTVEKIDDNTIKVTYAEPVRAITPGQAVVFYNGE 347 Query: 372 SNEARVLGGGIISGSKRSDAVEESLLS 398 LGG I ++ E ++ Sbjct: 348 V----CLGGATIDDVYKTSGQLEYVVQ 370 >gi|152989329|ref|YP_001347945.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa PA7] gi|205816889|sp|A6V4G0|MNMA_PSEA7 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|150964487|gb|ABR86512.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas aeruginosa PA7] Length = 375 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 127/384 (33%), Positives = 201/384 (52%), Gaps = 26/384 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 P+ RV+V MSGGVDSSV A LL++ GY V G+ ++ ++ ++ C A +D+ Sbjct: 5 APTPRRERVIVGMSGGVDSSVSALLLQQQGYQVEGLFMKNWDEDDGTE---YCTAREDLA 61 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ VCD I + + ++ + + V F + Y AG TP P + CNR +KF L Sbjct: 62 DAQAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYAL 121 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+ Sbjct: 122 MLGADLIATGHYVRRR-----DLDGRTELLKGLDPNKDQSYFLHAVGGEQIARSLFPVGE 176 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K VR +A + GL A K DS ICF+ + ++ D +K+ A GDI G+++G Sbjct: 177 LEKPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLKQYLP--AQPGDIETTEGKVIG 234 Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 RH+G++ +TIGQR+GLG+ +P +V+ D + ++VG L + Sbjct: 235 RHSGLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLAS 294 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 I W+ E + K+R Q +++ DG F++ + V GQ+ V Sbjct: 295 RIYWVNPVELERP----RRLRAKVRYRQSDQDCVLEKTADGYRAVFDEPQRAVTPGQSVV 350 Query: 367 FYTSDSNEARVLGGGIISGSKRSD 390 FY + LGGG+I ++ D Sbjct: 351 FYDGEV----CLGGGVIETAEAWD 370 >gi|330900616|gb|EGH32035.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. japonica str. M301072PT] Length = 366 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 125/382 (32%), Positives = 199/382 (52%), Gaps = 26/382 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VC Sbjct: 2 KRVIVGMSGGVDSSVSAVLLIEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + + ++ + + V F Y AG TP P + CNR +KF L LGAD+ Sbjct: 59 DKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K V Sbjct: 119 IATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH+G++ Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLM 231 Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +TIGQR+GLG+ +P +V+ D +++ +IVG L + EI W+ Sbjct: 232 YHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + K+R Q P +++ DG F+ + V GQ+ VFY + Sbjct: 292 PIDLSSP----RRLTAKVRYRQGDQPCTLEKAADGYRATFDDPQRAVTPGQSVVFYDGEI 347 Query: 373 NEARVLGGGIISGSKRSDAVEE 394 LGGG+I ++ + ++ Sbjct: 348 ----CLGGGVIEIAEPWTSKDK 365 >gi|296875545|ref|ZP_06899617.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus parasanguinis ATCC 15912] gi|296433469|gb|EFH19244.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus parasanguinis ATCC 15912] Length = 373 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 135/388 (34%), Positives = 196/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQ----VVRDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ +G H Sbjct: 176 KPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKEFLGNYLP--AQPGRMMTIDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG E+L + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSQNILYVGQGFYHEALMSTSLQSSQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V+ D V F + + + GQA VFY Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVKVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGGII + + V + + Sbjct: 350 DG----QECLGGGIIDQAYKDGKVCQYV 373 >gi|288936092|ref|YP_003440151.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Klebsiella variicola At-22] gi|290510856|ref|ZP_06550226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Klebsiella sp. 1_1_55] gi|288890801|gb|ADC59119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Klebsiella variicola At-22] gi|289777572|gb|EFD85570.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Klebsiella sp. 1_1_55] Length = 388 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 124/394 (31%), Positives = 203/394 (51%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 ++ A++ N + + +V+V MSGGVDSSV A LL + GY V G+ ++ + Sbjct: 6 VLEYAASKFNVASISMSESQKKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDG 65 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + C Sbjct: 66 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILC 122 Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L LGAD +ATGHY+R D + + R +D +DQSYFL+ Sbjct: 123 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSQLLRGLDGNKDQSYFLYT 177 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR +A E+ L A K DS ICF+ + K+ D + R Sbjct: 178 LSHEQIAQSLFPVGELEKPQVRKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP-- 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP 294 A G I+ ++G+ +G H G++ +T+GQR+GLG+ +P +VV D ++ +IV Sbjct: 236 AQPGKILTVDGEEIGTHQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQ 295 Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350 L + ++++W+ + + +C VK R Q +P V ++D + V Sbjct: 296 GHDHPRLMSVGLIAQQLHWVD----REPLQGTLRCTVKTRYRQTDIPCTVTALDEDRIEV 351 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY + LGGGII Sbjct: 352 RFDEPVAAVTPGQSAVFYLGEV----CLGGGIIE 381 >gi|157146082|ref|YP_001453401.1| tRNA-specific 2-thiouridylase MnmA [Citrobacter koseri ATCC BAA-895] gi|157083287|gb|ABV12965.1| hypothetical protein CKO_01838 [Citrobacter koseri ATCC BAA-895] Length = 383 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 124/394 (31%), Positives = 204/394 (51%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ A + N + + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MIEYAALKFNVVSIPMSESPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + C Sbjct: 61 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L LGAD +ATGHY+R D + + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDGNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + + R Sbjct: 173 LGHEQIAQSLFPVGELEKPQVRKIAEDLGLITAKKKDSTGICFIGERKFREFLGRYLP-- 230 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294 A G I+ ++G +G+H G++ +T+GQR+GLG+ +P +VV D ++ ++V Sbjct: 231 AQPGKIITVDGDEIGQHQGLMYHTLGQRKGLGIGGTKEGTEDPWYVVDKDVENNILVVAQ 290 Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350 L + ++++W+ F +C VK R Q +P V+ +D+ + V Sbjct: 291 GHEHPRLMSVGLIAQQLHWVDREPFS----GTLRCTVKTRYRQTDIPCTVKALDDERIEV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY + LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 376 >gi|126698878|ref|YP_001087775.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile 630] gi|123174593|sp|Q18BE2|MNMA_CLOD6 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|115250315|emb|CAJ68137.1| transfer RNA-specific 2-thiouridylase MnmA [Clostridium difficile] Length = 361 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 140/368 (38%), Positives = 221/368 (60%), Gaps = 12/368 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + +V++ MSGGVDSSV A LLK+ GYDVIGVT++L+ + +G CC+ V DARRV Sbjct: 4 NKKVMIGMSGGVDSSVAAYLLKQQGYDVIGVTMKLWQDDDVVEIEGGCCSLSAVEDARRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + I + YV ++ E F+ VI F Y G+TP PC+ CN+ +KF D RQ+G D Sbjct: 64 ANKIGIPFYVLNFREVFKEKVIDYFIDEYLEGKTPNPCIACNKHIKFDDFYKKARQIGCD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + D+ R ++ + + ++DQ+Y L+ TQ+QL P+GD +K+ Sbjct: 124 YVATGHYAKIE---KDESTGRYLLKKSVTDKKDQTYALYNLTQEQLEHTLLPIGDYEKDR 180 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A+EMG+ + +K DSQ+ICFV+ Y + VK+ + EG V G ILG+H GI Sbjct: 181 VREIAKEMGMAVHNKPDSQEICFVKDNDYANYVKKHSKKRIEEGFFVDTKGNILGKHKGI 240 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 + YTIGQR+GLG+ G+P+FV+ ++ ++ +++G E L + +++N++ D Sbjct: 241 LYYTIGQRKGLGITFGKPMFVIDINPINNTIVLGDNEDLFKKELIAKDVNFISI----DT 296 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + + KIR S P P + R +D + + F++++ + GQ+ V Y D V+ Sbjct: 297 LEEPLRVQAKIRYSAKPSPATIHRVGEDTIKIVFDEAQRAITKGQSVVMYDGDI----VV 352 Query: 379 GGGIISGS 386 GGGII S Sbjct: 353 GGGIIEKS 360 >gi|327463811|gb|EGF10127.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis SK1057] Length = 373 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 134/388 (34%), Positives = 197/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQVKR----DKDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + + + A G ++ L G+ +G+H Sbjct: 176 KTEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLP--AQPGRMMTLEGRDMGQH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ EP FVV D + + + VG ++L + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V D V+F++ + V GQA VFY Sbjct: 294 HFTKEMPEE----FTMECTAKFRYRQPDSKVTVTVKGDKAVVNFDQPQRAVTPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGGG+I ++ V + + Sbjct: 350 DGD----ECLGGGLIDRVYKNGQVLQYI 373 >gi|37526694|ref|NP_930038.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Photorhabdus luminescens subsp. laumondii TTO1] gi|81571961|sp|Q7MB22|MNMA_PHOLL RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|36786126|emb|CAE15178.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Photorhabdus luminescens subsp. laumondii TTO1] Length = 367 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 123/378 (32%), Positives = 195/378 (51%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDDEE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 60 QSVCDKLGIELHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +ATGHY+R R D + + R +D +DQSYFL+ + QQ+ FP+G++ Sbjct: 120 LNADYIATGHYVRRR-----DINGKSQLLRGLDNNKDQSYFLYTLSHQQIAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++GL A K DS ICF+ + K+ D + R A G I+ ++G+ LG Sbjct: 175 EKPEVRRIAEKIGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AKPGPIMTVDGESLGE 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ EP +V+ D ++ +IV L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGSEEPWYVIDKDVQNNILIVAQGHEHPRLMSTGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366 + W+ + + C VK R Q +P V ++D + V F V GQ+ V Sbjct: 293 LYWVD----RQTLTEKIHCVVKTRYRQQDIPCSVTPISEDKIEVHFANPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGG+I Sbjct: 349 FYQGEV----CLGGGVIE 362 >gi|120598593|ref|YP_963167.1| tRNA-specific 2-thiouridylase MnmA [Shewanella sp. W3-18-1] gi|166235084|sp|A1RIW8|MNMA_SHESW RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|120558686|gb|ABM24613.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella sp. W3-18-1] Length = 372 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 126/385 (32%), Positives = 201/385 (52%), Gaps = 27/385 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ +V+V MSGGVDSSV A LL + GY V G+ ++ + ++ C A +D+ Sbjct: 4 IEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNE---YCAAAEDL 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 61 KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 120 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + L AD +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+ Sbjct: 121 DEILDADYIAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPV 176 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR++A+EMGL DK DS ICF+ + K+ + + A G+I G++ Sbjct: 177 GELEKHQVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEV 234 Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304 +G H G++ +T+GQR+GLG+ +P +VV D + +IV G L + + Sbjct: 235 IGTHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSNGMT 294 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363 + +++W+ VDG VK R Q VP + D+ + V F++ V GQ Sbjct: 295 VNQLHWVD----RTGPVDGCHITVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQ 350 Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388 + VFY + LGGGII R Sbjct: 351 SVVFYDGEV----CLGGGIIDQLIR 371 >gi|325698055|gb|EGD39936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis SK160] Length = 373 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 135/388 (34%), Positives = 200/388 (51%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I +S+Y ++E+ + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGISYYSVNFEKEYWERVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQVKR----DQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + + + A G ++ L G+ +G+H Sbjct: 176 KPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ EP FVV D + + + VG ++L + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E + +C K R Q V V D V+F++ + V GQA VFY Sbjct: 294 HFTKEMPEEFTI----ECTAKFRYRQPDSKVTVTVKGDKAVVNFDQPQRAVTPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGGG+I + ++ V + + Sbjct: 350 DGD----ECLGGGLIDRAYKNGQVLQYI 373 >gi|311694977|gb|ADP97850.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [marine bacterium HP15] Length = 395 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 134/384 (34%), Positives = 197/384 (51%), Gaps = 23/384 (5%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 + + RV+V MSGGVDSSV A LLK GY V G+ ++ ++ ++ C A D+ Sbjct: 10 PNSNANTRVIVGMSGGVDSSVAAWLLKDQGYQVEGLFMKNWDEDDGTE---YCTAMTDLA 66 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ V D I + + + + + V F S Y AG TP P + CN+ VKF L Sbjct: 67 DAQAVADAIGIKLHTASFAAEYWDRVFEHFLSEYQAGRTPNPDILCNKEVKFRAFLDYAI 126 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD +ATGHY R R G GK + + + +D +DQSYFL A + ++ FP+G+ Sbjct: 127 TLGADYIATGHYARQRPIAGSTGKAQ--LLKGLDPNKDQSYFLHAVSGDRIARTLFPVGE 184 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K VR +A + G DK DS ICF+ + K+ D +K+ A GDI +GQ +G Sbjct: 185 LEKPEVRRIAEQQGFVTHDKKDSTGICFIGERKFKDFLKQYLP--AQPGDIETPDGQKIG 242 Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLR 306 RH G++ +TIGQR+GLG+ EP +V D + + ++ L + Sbjct: 243 RHQGLMYHTIGQRQGLGIGGLSEFGDEPWYVAEKDLSRNVLVAVQGKHHPLLFSRGLVSG 302 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 I+W+ +A F+C K R Q V D GV VDF+ ++ V GQ+ V Sbjct: 303 PIDWVAG----EAPAGHFRCKAKTRYRQPDQDCQVLLIDGGVRVDFDDAQRAVTPGQSVV 358 Query: 367 FYTSDSNEARVLGGGIISGSKRSD 390 FY + LGGG+I + R D Sbjct: 359 FYDGEV----CLGGGVIEQTWRDD 378 >gi|320156716|ref|YP_004189095.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio vulnificus MO6-24/O] gi|319932028|gb|ADV86892.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio vulnificus MO6-24/O] Length = 374 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 127/381 (33%), Positives = 198/381 (51%), Gaps = 28/381 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LLK+ GY V G+ ++ + S+ C A +D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNSE---YCTAAEDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 60 QAVCDKLGIHLHKINFASEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY+R + + M R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 120 LDADYIAMGHYVRRSF---PENGEKPQMLRGLDGNKDQSYFLYTLSHEQVARSLFPVGEL 176 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL A K DS ICF+ + K+ D + R A G+I G++LG+ Sbjct: 177 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGNIESPEGEVLGQ 234 Query: 256 HNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRV--IVGP-RESLEVHRIYL 305 H G++ +T+GQR+GL + EP FV D + + + G L+ + Sbjct: 235 HQGLMYHTLGQRKGLHIGGRKGGGGNEEPWFVAEKDLKRNVLIAVQGQDHPMLKSEGLIA 294 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQA 364 +++W+ + + D KC VK R Q +P + DD + V F++ E+ V GQ+ Sbjct: 295 SQLHWV----EREPIRDVMKCTVKTRYRQQDIPCTIIPIDDENIKVIFDEPEIAVTPGQS 350 Query: 365 CVFYTSDSNEARVLGGGIISG 385 VFY D LGGGII Sbjct: 351 AVFYQGDV----CLGGGIIEK 367 >gi|254974826|ref|ZP_05271298.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile QCD-66c26] gi|255092214|ref|ZP_05321692.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile CIP 107932] gi|255100299|ref|ZP_05329276.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile QCD-63q42] gi|255306238|ref|ZP_05350410.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile ATCC 43255] gi|255313953|ref|ZP_05355536.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile QCD-76w55] gi|255516633|ref|ZP_05384309.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile QCD-97b34] gi|255649732|ref|ZP_05396634.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile QCD-37x79] gi|260682888|ref|YP_003214173.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile CD196] gi|260686486|ref|YP_003217619.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile R20291] gi|260209051|emb|CBA62172.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile CD196] gi|260212502|emb|CBE03431.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile R20291] Length = 359 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 140/368 (38%), Positives = 221/368 (60%), Gaps = 12/368 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + +V++ MSGGVDSSV A LLK+ GYDVIGVT++L+ + +G CC+ V DARRV Sbjct: 2 NKKVMIGMSGGVDSSVAAYLLKQQGYDVIGVTMKLWQDDDVVEIEGGCCSLSAVEDARRV 61 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + I + YV ++ E F+ VI F Y G+TP PC+ CN+ +KF D RQ+G D Sbjct: 62 ANKIGIPFYVLNFREVFKEKVIDYFIDEYLEGKTPNPCIACNKHIKFDDFYKKARQIGCD 121 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + D+ R ++ + + ++DQ+Y L+ TQ+QL P+GD +K+ Sbjct: 122 YVATGHYAKIE---KDESTGRYLLKKSVTDKKDQTYALYNLTQEQLEHTLLPIGDYEKDR 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A+EMG+ + +K DSQ+ICFV+ Y + VK+ + EG V G ILG+H GI Sbjct: 179 VREIAKEMGMAVHNKPDSQEICFVKDNDYANYVKKHSKKRIEEGFFVDTKGNILGKHKGI 238 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 + YTIGQR+GLG+ G+P+FV+ ++ ++ +++G E L + +++N++ D Sbjct: 239 LYYTIGQRKGLGITFGKPMFVIDINPINNTIVLGDNEDLFKKELIAKDVNFISI----DT 294 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + + KIR S P P + R +D + + F++++ + GQ+ V Y D V+ Sbjct: 295 LEEPLRVQAKIRYSAKPSPATIHRVGEDTIKIVFDEAQRAITKGQSVVMYDGDI----VV 350 Query: 379 GGGIISGS 386 GGGII S Sbjct: 351 GGGIIEKS 358 >gi|306834574|ref|ZP_07467687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus bovis ATCC 700338] gi|304423376|gb|EFM26529.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus bovis ATCC 700338] Length = 373 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 134/388 (34%), Positives = 194/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R D +DQ+YFL +Q+QL + FPLG ++ Sbjct: 120 GADYVATGHYAQ----VSRDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + + + A +G ++ ++G+ +G H Sbjct: 176 KPEVRKIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ +P FVV D + + + VG ESL + I Sbjct: 234 AGLMYYTIGQRGGLGIGGQQGGDNQPWFVVGKDLSKNILYVGQGFYHESLMSTSLDASSI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E + K R Q V + D V F + + + GQA VFY Sbjct: 294 HFTRDMPEE----FTMEVTAKFRYRQPDSKVTIHVKGDKAEVVFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGGII + ++ + + Sbjct: 350 DG----KECLGGGIIDMAYKNGVACQYI 373 >gi|322390500|ref|ZP_08064018.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus parasanguinis ATCC 903] gi|321142774|gb|EFX38234.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus parasanguinis ATCC 903] Length = 373 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 139/388 (35%), Positives = 195/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAR----VSRDEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ +G H Sbjct: 176 KPEVRRLAEEAGLATAKKKDSTGICFIGEKNFKEFLGNYLP--AQPGRMMTIDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG ESL + I Sbjct: 234 AGLMYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASMI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E +C K R Q V V+ D V F + + + GQA VFY Sbjct: 294 HFTRDMPEE----FEMECTAKFRYRQPDSKVTVKVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGGII + + V + + Sbjct: 350 DG----QECLGGGIIDQAYKYGKVCQYI 373 >gi|37679527|ref|NP_934136.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio vulnificus YJ016] gi|61217310|sp|Q7MLT4|MNMA_VIBVY RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|37198271|dbj|BAC94107.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Vibrio vulnificus YJ016] Length = 374 Score = 497 bits (1281), Expect = e-138, Method: Composition-based stats. Identities = 128/381 (33%), Positives = 198/381 (51%), Gaps = 28/381 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LLK+ GY V G+ ++ + S+ C A +D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDDSE---YCTAAEDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F S Y AG TP P + CN+ +KF L + Sbjct: 60 QAVCDKLGIHLHKINFAAEYWDNVFEYFLSEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY+R + + M R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 120 LDADYIAMGHYVRRSF---PENGEKPQMLRGLDGNKDQSYFLYTLSHEQVARSLFPVGEL 176 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL A K DS ICF+ + K+ D + R A G+I G++LG+ Sbjct: 177 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGNIESPEGEVLGQ 234 Query: 256 HNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRV--IVGP-RESLEVHRIYL 305 H G++ +T+GQR+GL + EP FV D + + + G L+ + Sbjct: 235 HQGLMYHTLGQRKGLHIGGRKGGGGNEEPWFVAEKDLKRNVLIAVQGQDHPMLKSEGLIA 294 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQA 364 +++W+ + + D KC VK R Q +P + DD + V F++ E+ V GQ+ Sbjct: 295 SQLHWV----EREPIRDVMKCTVKTRYRQQDIPCTIIPIDDENIKVIFDEPEIAVTPGQS 350 Query: 365 CVFYTSDSNEARVLGGGIISG 385 VFY D LGGGII Sbjct: 351 AVFYQGDV----CLGGGIIEK 367 >gi|284007318|emb|CBA72670.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arsenophonus nasoniae] Length = 364 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 129/375 (34%), Positives = 202/375 (53%), Gaps = 28/375 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A D+ DA+ VC Sbjct: 2 KKVIVGMSGGVDSSVSAYLLKQQGYQVAGLFMKNWEEDDNEE---YCAAATDLADAQSVC 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139 D +++ + ++ + + V F + Y AG TP P + CN+ +KF L L AD Sbjct: 59 DKLDIELHTVNFAAEYWDNVFAHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLAAD 118 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + G R + R +D +DQSYFL+ Q QL FP+G+++K + Sbjct: 119 YIATGHYARCKTVNG-----RHQLLRGLDNNKDQSYFLYTLDQAQLAQSLFPIGELEKST 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E+GL A K DS ICF+ + K+ D + R A G I+ ++G+ILG H+G+ Sbjct: 174 VRRIAEEIGLITAKKKDSTGICFIGERKFRDFLARYLP--AKPGVIITVDGKILGEHSGL 231 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +T+GQR+GLG+ +P +VV D ++R+IV L + +++I+W+ Sbjct: 232 MYHTLGQRKGLGIGGVKEANDDPWYVVDKDIKNNRLIVAQGHNHPRLMSTGLIVQQIHWI 291 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTS 370 A+ + + VK R Q +P + Q +D+ + V F+ V GQ+ VFY Sbjct: 292 N----PPALNETNQYTVKTRYRQPDIPCTIKQLSDNKIIVQFDYPIAAVTPGQSAVFYQG 347 Query: 371 DSNEARVLGGGIISG 385 + LGGG+I Sbjct: 348 EI----CLGGGVIET 358 >gi|110808325|gb|ABG91067.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Liberibacter asiaticus] Length = 357 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 356/356 (100%), Positives = 356/356 (100%) Query: 53 QLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGE 112 QLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGE Sbjct: 2 QLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGE 61 Query: 113 TPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD 172 TPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD Sbjct: 62 TPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD 121 Query: 173 QSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV 232 QSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV Sbjct: 122 QSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV 181 Query: 233 KRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV 292 KRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV Sbjct: 182 KRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV 241 Query: 293 GPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF 352 GPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF Sbjct: 242 GPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF 301 Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM 408 EKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM Sbjct: 302 EKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM 357 >gi|288906423|ref|YP_003431645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus gallolyticus UCN34] gi|288733149|emb|CBI14730.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus gallolyticus UCN34] Length = 373 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 133/388 (34%), Positives = 195/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R D +DQ+YFL +Q+QL + FPLG ++ Sbjct: 120 GADYVATGHYAQ----VSRDEDGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + + + A +G ++ ++G+ +G H Sbjct: 176 KPEVRKIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ +P FVV D + + + VG +SL + I Sbjct: 234 AGLMYYTIGQRGGLGIGGQQGGDNQPWFVVGKDLSKNILYVGQGFYHDSLMSTSLDASSI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E + K R Q V V V F++ + + GQA VFY Sbjct: 294 HFTRDMPEE----FTMEVTAKFRYRQPDSKVTVHVKGAKAEVVFDEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGGII + ++ + + Sbjct: 350 DGE----ECLGGGIIDMAYKNGVACQYI 373 >gi|293404489|ref|ZP_06648483.1| trmU [Escherichia coli FVEC1412] gi|298380264|ref|ZP_06989869.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli FVEC1302] gi|300896838|ref|ZP_07115333.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 198-1] gi|300938705|ref|ZP_07153429.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 21-1] gi|301024581|ref|ZP_07188253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 69-1] gi|331646392|ref|ZP_08347495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli M605] gi|281178243|dbj|BAI54573.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Escherichia coli SE15] gi|291429075|gb|EFF02100.1| trmU [Escherichia coli FVEC1412] gi|298279962|gb|EFI21470.1| tRNA-specific 2-thiouridylase mnmA [Escherichia coli FVEC1302] gi|300359320|gb|EFJ75190.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 198-1] gi|300396506|gb|EFJ80044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 69-1] gi|300456350|gb|EFK19843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 21-1] gi|331045144|gb|EGI17271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli M605] Length = 383 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 126/394 (31%), Positives = 204/394 (51%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 61 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L LGAD +ATGHY+R D + + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + + R Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294 A G I+ ++G +G H G++ +T+GQR+GLG+ EP +VV D ++ +IV Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQ 290 Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350 L + ++++W+ + +C VK R Q +P V+ +DD + V Sbjct: 291 GHEHPRLMSVGLIAQQLHWVD----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY + LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 376 >gi|300816836|ref|ZP_07097056.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 107-1] gi|300821083|ref|ZP_07101232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 119-7] gi|300906948|ref|ZP_07124620.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 84-1] gi|300917906|ref|ZP_07134539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 115-1] gi|300922663|ref|ZP_07138760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 182-1] gi|300928309|ref|ZP_07143845.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 187-1] gi|300949484|ref|ZP_07163481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 116-1] gi|300955539|ref|ZP_07167901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 175-1] gi|301306077|ref|ZP_07212155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 124-1] gi|301328492|ref|ZP_07221558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 78-1] gi|301644551|ref|ZP_07244544.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 146-1] gi|309796520|ref|ZP_07690927.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 145-7] gi|331641677|ref|ZP_08342812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli H736] gi|331652184|ref|ZP_08353203.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli M718] gi|331676926|ref|ZP_08377622.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli H591] gi|300317578|gb|EFJ67362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 175-1] gi|300401295|gb|EFJ84833.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 84-1] gi|300414896|gb|EFJ98206.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 115-1] gi|300421012|gb|EFK04323.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 182-1] gi|300451104|gb|EFK14724.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 116-1] gi|300463695|gb|EFK27188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 187-1] gi|300526382|gb|EFK47451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 119-7] gi|300530610|gb|EFK51672.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 107-1] gi|300838649|gb|EFK66409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 124-1] gi|300845099|gb|EFK72859.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 78-1] gi|301077133|gb|EFK91939.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 146-1] gi|308119832|gb|EFO57094.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 145-7] gi|315135765|dbj|BAJ42924.1| trmU [Escherichia coli DH1] gi|315254893|gb|EFU34861.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 85-1] gi|324017533|gb|EGB86752.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 117-3] gi|331038475|gb|EGI10695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli H736] gi|331050462|gb|EGI22520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli M718] gi|331075615|gb|EGI46913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli H591] gi|332102031|gb|EGJ05377.1| conserved hypothetical protein [Shigella sp. D9] Length = 383 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 125/394 (31%), Positives = 204/394 (51%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 61 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L LGAD +ATGHY+R D + + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + + R Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294 A G I+ ++G +G H G++ +T+GQR+GLG+ EP +VV D ++ ++V Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQ 290 Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350 L + ++++W+ + +C VK R Q +P V+ +DD + V Sbjct: 291 GHEHPRLMSVGLIAQQLHWVD----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY + LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 376 >gi|29376579|ref|NP_815733.1| tRNA-specific 2-thiouridylase MnmA [Enterococcus faecalis V583] gi|227520188|ref|ZP_03950237.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0104] gi|227555378|ref|ZP_03985425.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis HH22] gi|256762940|ref|ZP_05503520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis T3] gi|256853584|ref|ZP_05558949.1| tRNA-specific 2-thiouridylase mnmA [Enterococcus faecalis T8] gi|257079445|ref|ZP_05573806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis JH1] gi|257087270|ref|ZP_05581631.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis D6] gi|257090346|ref|ZP_05584707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis CH188] gi|257419691|ref|ZP_05596685.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis T11] gi|257422150|ref|ZP_05599140.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis X98] gi|294780347|ref|ZP_06745716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis PC1.1] gi|307270242|ref|ZP_07551555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX4248] gi|307295656|ref|ZP_07575491.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0411] gi|312900841|ref|ZP_07760135.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0470] gi|312902847|ref|ZP_07762051.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0635] gi|73920123|sp|Q820U1|MNMA_ENTFA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|29344043|gb|AAO81803.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis V583] gi|227072360|gb|EEI10323.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0104] gi|227175492|gb|EEI56464.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis HH22] gi|256684191|gb|EEU23886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis T3] gi|256710527|gb|EEU25570.1| tRNA-specific 2-thiouridylase mnmA [Enterococcus faecalis T8] gi|256987475|gb|EEU74777.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis JH1] gi|256995300|gb|EEU82602.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis D6] gi|256999158|gb|EEU85678.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis CH188] gi|257161519|gb|EEU91479.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis T11] gi|257163974|gb|EEU93934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis X98] gi|294452611|gb|EFG21044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis PC1.1] gi|306496368|gb|EFM65945.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0411] gi|306513458|gb|EFM82077.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX4248] gi|310633901|gb|EFQ17184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0635] gi|311291940|gb|EFQ70496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0470] gi|315025815|gb|EFT37747.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX2137] gi|315028590|gb|EFT40522.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX4000] gi|315031109|gb|EFT43041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0017] gi|315149261|gb|EFT93277.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0012] gi|315157187|gb|EFU01204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0043] gi|315171619|gb|EFU15636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX1342] gi|315173202|gb|EFU17219.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX1346] gi|315575062|gb|EFU87253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0309B] gi|315576621|gb|EFU88812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0630] gi|315582488|gb|EFU94679.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0309A] gi|327535526|gb|AEA94360.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis OG1RF] Length = 374 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 135/389 (34%), Positives = 197/389 (50%), Gaps = 26/389 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V D I + +Y ++E+ + + V F + Y G TP P V CN+ +KF L QL Sbjct: 60 AKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R +D +DQ+YFL +Q QL FPLG M+ Sbjct: 120 GADYVATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGME 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS +CF+ + + + + A +G++V +G+I G+H Sbjct: 176 KSEVRAIAERAGLATAKKKDSTGVCFIGEKNFKEFLSNYLP--AKKGNMVTEDGEIKGQH 233 Query: 257 NGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 +G++ YTI G G G EP FV+ D ++ + VG E L + E++ Sbjct: 234 DGLMYYTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVH 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVF 367 + D + F C K R Q +PV V ++DG V F++ V GQA VF Sbjct: 294 FTVDT----PMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVF 349 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396 Y LGGG+I + + + + + Sbjct: 350 YDG----MECLGGGLIDRAYQDEKELQYV 374 >gi|313608681|gb|EFR84517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes FSL F2-208] Length = 371 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 133/388 (34%), Positives = 198/388 (51%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + N D+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L Sbjct: 58 DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + + + R +D +DQ+YFL +Q QL + FPLG Sbjct: 118 ESLGADYVATGHYAQVKKVGDE-----IELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K VR++A++ GL A+K DS ICF+ + + + A G++ LNG++L Sbjct: 173 GMEKTEVREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLNGEVL 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP V D + + V E+L + +I+ Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWXXVGKDLKENVLFVEQGFHHETLYSDSLIATDIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 + + + +C K R Q V V +DG V F + GQA VFY Sbjct: 291 FTTNAEKPKTI----ECTAKFRYRQTDTKVTVHLREDGTAEVVFADPVRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D GGG I ++ A + + Sbjct: 347 DGDI----CFGGGTIDTVWKNGAKLDYV 370 >gi|262394626|ref|YP_003286480.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio sp. Ex25] gi|262338220|gb|ACY52015.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio sp. Ex25] Length = 374 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 126/380 (33%), Positives = 197/380 (51%), Gaps = 28/380 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 60 QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY+R D + M R +D +DQSYFL+ + +Q+ FP+GD+ Sbjct: 120 LDADYIAMGHYVRRSF---PDNGEKPAMLRGLDGNKDQSYFLYTLSHEQIGRSLFPVGDL 176 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL A K DS ICF+ + K+ D + R A G+I G+++G+ Sbjct: 177 EKPEVRRIAEEQGLVTAKKKDSTGICFIGERKFTDFLGRYLP--AQPGNIETPEGEVIGQ 234 Query: 256 HNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 H G++ +T+GQR+GL + EP FV D + +I L+ + Sbjct: 235 HQGLMYHTLGQRKGLHIGGRKGGGGNEEPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLA 294 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQA 364 +++W+ + + D KC VK R Q+ +P + DD + V F++ ++ V GQ+ Sbjct: 295 SQLHWVD----REPIRDVMKCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQS 350 Query: 365 CVFYTSDSNEARVLGGGIIS 384 VFY D LGGGII Sbjct: 351 AVFYKDDV----CLGGGIIE 366 >gi|73855169|gb|AAZ87876.1| conserved hypothetical protein [Shigella sonnei Ss046] Length = 383 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 125/394 (31%), Positives = 204/394 (51%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 61 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L LGAD +ATGHY+R D + + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + + R G Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPG- 231 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294 G I+ ++G +G H G++ +T+GQR+GLG+ EP +VV D ++ ++V Sbjct: 232 -QPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQ 290 Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350 L + ++++W+ + +C VK R Q +P V+ +DD + V Sbjct: 291 GHEHPRLMSVGLIAQQLHWVD----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY + LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 376 >gi|90021322|ref|YP_527149.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Saccharophagus degradans 2-40] gi|123090544|sp|Q21K42|MNMA_SACD2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|89950922|gb|ABD80937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Saccharophagus degradans 2-40] Length = 380 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 121/382 (31%), Positives = 197/382 (51%), Gaps = 23/382 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 + ++ V+V MSGGVDSSV A LLK+ GY V G+ ++ ++ ++ C A D+ Sbjct: 13 PRPANEITVIVGMSGGVDSSVSALLLKQQGYKVEGLFMKNWDEDDGTE---YCTAMTDLM 69 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA VC +++ + ++ ++ + V F Y A TP P + CNR +KF L + Sbjct: 70 DAAAVCQKLDIHLHTANFARQYWDNVFEYFLEEYKACRTPNPDILCNREIKFKVFLEYAK 129 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 +LGAD +ATGHY R+ + G + + +D +DQSYFL A +Q+ FP+GD Sbjct: 130 KLGADYIATGHYTRTSQHEG-----CTQLRKGLDPNKDQSYFLHAVGEQEFAQTLFPIGD 184 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K VR +A E GL +K DS ICF+ + ++ D ++ A G IV NG +G Sbjct: 185 IEKPQVRAIAEERGLVTHNKKDSTGICFIGERRFKDFLETYLP--AQPGVIVDENGVEIG 242 Query: 255 RHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 +H G++ +TIGQR+GLG+ P +V +++++V L + + Sbjct: 243 KHQGLMYHTIGQRQGLGIGGVPGRPEAPWYVAEKRLQTNQLVVVQGSNHPLLFSNELTTG 302 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 ++W+ L + + F+C K R Q + N DGV F++ + V GQ+ V Sbjct: 303 AMHWINPRLAP-TLSEPFRCTAKTRYRQPEQWCTLTANGDGVIAVFDEPQRAVTPGQSAV 361 Query: 367 FYTSDSNEARVLGGGIISGSKR 388 FY D LGG +I +++ Sbjct: 362 FYQGDI----CLGGAVIETTRK 379 >gi|24051447|gb|AAN42769.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30040928|gb|AAP16658.1| hypothetical protein S1235 [Shigella flexneri 2a str. 2457T] gi|281600566|gb|ADA73550.1| putative tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Shigella flexneri 2002017] Length = 383 Score = 497 bits (1280), Expect = e-138, Method: Composition-based stats. Identities = 125/394 (31%), Positives = 204/394 (51%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 61 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L LGAD +ATGHY+R D + + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + + R Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294 A G I+ ++G +G H G++ +T+GQR+GLG+ EP +VV D ++ ++V Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQ 290 Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350 L + ++++W+ + +C VK R Q +P V+ +DD + V Sbjct: 291 GHEHPRLMSVGLIAQQLHWVD----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIKV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY + LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 376 >gi|291085497|ref|ZP_06353231.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Citrobacter youngae ATCC 29220] gi|291071151|gb|EFE09260.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Citrobacter youngae ATCC 29220] Length = 383 Score = 496 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 123/394 (31%), Positives = 204/394 (51%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ A + N + + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MLEYAALKFNVVSIPMSESPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + C Sbjct: 61 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L LGAD +ATGHY+R D + + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDGNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + + R Sbjct: 173 LGHEQIAQSLFPVGELEKPQVRKIAEDLGLITAKKKDSTGICFIGERKFREFLGRYLP-- 230 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294 A G I+ ++G+ +G+H G++ +T+GQR+GLG+ +P +VV D ++ ++V Sbjct: 231 AQPGKIITVDGEDIGQHQGLMYHTLGQRKGLGIGGTKEGTEDPWYVVDKDVENNILVVAQ 290 Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYV 350 L + ++++W+ + +C VK R Q +P V+ D + + V Sbjct: 291 GHEHPRLMSVGLVAQQLHWVD----REPFTGTMRCTVKTRYRQTDIPCTVKALDAERIEV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY + LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 376 >gi|76788488|ref|YP_330692.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae A909] gi|123601021|sp|Q3JYG1|MNMA_STRA1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|76563545|gb|ABA46129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae A909] Length = 373 Score = 496 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 140/388 (36%), Positives = 200/388 (51%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + ++RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 3 DNSNIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQ----VTRDENGIVHMLRGADNNKDQTYFLSQLSQEQLQKTLFPLGHLQ 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A E GL A K DS ICF+ + + D + + A G ++ ++G+ +G H Sbjct: 176 KPEVRRIAEEAGLATAKKKDSTGICFIGEKNFKDFLGQYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ +P FVV D + + + VG +SL + EI Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNKPWFVVGKDLSKNILYVGQGFYHDSLMSTSLTASEI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E +C K R Q V V + V F+ + + GQA VFY Sbjct: 294 HFTRDMPNEFK----LECTAKFRYRQPDSKVKVYVKGNQARVVFDDLQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 NE LGGG+I + R D + + + Sbjct: 350 ----NEQECLGGGMIDQAYRDDKICQYI 373 >gi|319940179|ref|ZP_08014532.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus anginosus 1_2_62CV] gi|319810650|gb|EFW06980.1| tRNA-specific 2-thiouridylase mnmA [Streptococcus anginosus 1_2_62CV] Length = 373 Score = 496 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 131/386 (33%), Positives = 197/386 (51%), Gaps = 25/386 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 5 SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAA 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGA Sbjct: 62 VADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGA 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R++ D M R +D +DQ+YFL +Q+QL FPLG ++K Sbjct: 122 DYVATGHYARAKR----DEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKS 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A + GL A K DS ICF+ + + + + A G ++ ++G+ +G H G Sbjct: 178 EVRAIAEKAGLATAKKKDSTGICFIGEKNFKEFLGNYLP--AQPGRMMTVDGRDMGEHAG 235 Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 ++ YTIGQR GLG+ EP FVV D + + + VG ++L + ++++ Sbjct: 236 LMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYNDNLMSTSLDASQVHF 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 E +C K R Q V V D V+F + + + GQA VFY Sbjct: 296 TRKMPAE----FTMECTAKFRYRQPDSKVTVTVKGDKAIVNFAEPQRAITPGQAVVFYDG 351 Query: 371 DSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + + +++ + Sbjct: 352 E----ECLGGGLIDNAYKDGKLQQYI 373 >gi|228477995|ref|ZP_04062606.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus salivarius SK126] gi|228250175|gb|EEK09428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus salivarius SK126] Length = 373 Score = 496 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 137/388 (35%), Positives = 196/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQ----VVRDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKTMFPLGHLQ 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + + + A +G ++ ++G+ +G H Sbjct: 176 KPEVREIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308 NG++ YTIGQR G+G+ P FVV D + + + VG ESL + I Sbjct: 234 NGLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDASMI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E +C K R Q V V+ D V F + + + GQA VFY Sbjct: 294 HFTRDMPEE----FEMECTAKFRYRQPDSKVTVKVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGGII + + V + + Sbjct: 350 DG----QECLGGGIIDQAYKDGKVCQYV 373 >gi|126174691|ref|YP_001050840.1| tRNA-specific 2-thiouridylase MnmA [Shewanella baltica OS155] gi|125997896|gb|ABN61971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella baltica OS155] Length = 392 Score = 496 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 126/385 (32%), Positives = 200/385 (51%), Gaps = 27/385 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ +V+V MSGGVDSSV A LL + GY V G+ ++ + ++ C A +D+ Sbjct: 24 IEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNE---YCAAAEDL 80 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 81 KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 140 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + L AD +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+ Sbjct: 141 DEILDADYIAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPV 196 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR++A+EMGL DK DS ICF+ + K+ + + A G+I G++ Sbjct: 197 GELEKHEVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEV 254 Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304 +G H G++ +T+GQR+GLG+ +P +VV D + +IV G L + Sbjct: 255 IGTHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMT 314 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363 + +++W+ VDG VK R Q VP + D+ + V F++ V GQ Sbjct: 315 VNQLHWVD----RTGPVDGCHIAVKTRYRQQDVPCTLTYTDEHTLGVVFDEPVAAVTPGQ 370 Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388 + VFY + LGGGII R Sbjct: 371 SAVFYDGEV----CLGGGIIDQLIR 391 >gi|213970042|ref|ZP_03398174.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas syringae pv. tomato T1] gi|213925146|gb|EEB58709.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas syringae pv. tomato T1] Length = 376 Score = 496 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 127/388 (32%), Positives = 200/388 (51%), Gaps = 26/388 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 N + RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ Sbjct: 6 PSNSEMKRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLA 62 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ VCD I + + ++ + + V F Y AG TP P + CNR +KF L Sbjct: 63 DAQAVCDRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYAL 122 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+ Sbjct: 123 MLGADLIATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGE 177 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K VR +A + GL A K DS ICF+ + ++ D +++ A GDI G+++G Sbjct: 178 LEKPQVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGDIKTTEGEVIG 235 Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 RH+G++ +TIGQR+GLG+ +P +V+ D +++ +IVG L + Sbjct: 236 RHSGLMYHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSS 295 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 EI W+ K K+R Q P +++ G F+ + V GQ+ V Sbjct: 296 EIYWVNPIDLSSP----RKLTAKVRYRQSDQPCMLEKTAGGYRATFDDPQRAVTPGQSVV 351 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEE 394 FY + LGGG+I ++ + ++ Sbjct: 352 FYDGEI----CLGGGVIEIAEPWTSKDK 375 >gi|237731114|ref|ZP_04561595.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Citrobacter sp. 30_2] gi|226906653|gb|EEH92571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Citrobacter sp. 30_2] Length = 383 Score = 496 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 123/394 (31%), Positives = 204/394 (51%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ A + N + + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MLEYAALKFNVVSIPMSESPKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + C Sbjct: 61 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L LGAD +ATGHY+R D + + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDGNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + + R Sbjct: 173 LGHEQIAQSLFPVGELEKPQVRKIAEDLGLITAKKKDSTGICFIGERKFREFLGRYLP-- 230 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294 A G I+ ++G+ +G+H G++ +T+GQR+GLG+ +P +VV D ++ ++V Sbjct: 231 AQPGKIITVDGEEIGQHQGLMYHTLGQRKGLGIGGTKEGTEDPWYVVDKDVENNILVVAQ 290 Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYV 350 L + ++++W+ + +C VK R Q +P V+ D + + V Sbjct: 291 GHEHPRLMSVGLVAQQLHWVD----REPFTGTMRCTVKTRYRQTDIPCTVKALDAERIEV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY + LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 376 >gi|205821998|sp|A9L4G9|MNMA_SHEB9 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 372 Score = 496 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 125/385 (32%), Positives = 200/385 (51%), Gaps = 27/385 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ +V+V MSGGVDSSV A LL + GY V G+ ++ + ++ C A +D+ Sbjct: 4 IEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNE---YCAAAEDL 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 61 KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 120 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + L AD +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+ Sbjct: 121 DEILDADYIAMGHYVRRR----DNTDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPV 176 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR++A+EMGL DK DS ICF+ + K+ + + A G+I G++ Sbjct: 177 GELEKHEVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEV 234 Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304 +G H G++ +T+GQR+GLG+ +P +VV D + +IV G L + Sbjct: 235 IGTHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMT 294 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363 + +++W+ +DG VK R Q VP + D+ + V F++ V GQ Sbjct: 295 VNQLHWVD----RTGPIDGCHIAVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQ 350 Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388 + VFY + LGGGII R Sbjct: 351 SAVFYDGEV----CLGGGIIDQLIR 371 >gi|304409068|ref|ZP_07390689.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella baltica OS183] gi|307303071|ref|ZP_07582826.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella baltica BA175] gi|304352889|gb|EFM17286.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella baltica OS183] gi|306913431|gb|EFN43853.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella baltica BA175] Length = 372 Score = 496 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 125/385 (32%), Positives = 200/385 (51%), Gaps = 27/385 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ +V+V MSGGVDSSV A LL + GY V G+ ++ + ++ C A +D+ Sbjct: 4 IEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNE---YCAAAEDL 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 61 KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 120 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + L AD +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+ Sbjct: 121 DEILDADYIAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPV 176 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR++A+EMGL DK DS ICF+ + K+ + + A G+I G++ Sbjct: 177 GELEKHEVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEV 234 Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304 +G H G++ +T+GQR+GLG+ +P +VV D + +IV G L + Sbjct: 235 IGTHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMT 294 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363 + +++W+ +DG VK R Q VP + D+ + V F++ V GQ Sbjct: 295 VNQLHWVD----RTGPIDGCHIAVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQ 350 Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388 + VFY + LGGGII R Sbjct: 351 SAVFYDGEV----CLGGGIIDQLIR 371 >gi|318606118|emb|CBY27616.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia enterocolitica subsp. palearctica Y11] Length = 373 Score = 496 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 126/378 (33%), Positives = 198/378 (52%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + D + + R +D +DQSYFL+ + +QL FP+G++ Sbjct: 120 LGADYIATGHYVRRQ-----DVNGKSRLLRGLDGNKDQSYFLYTLSHEQLTQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++ L A K DS ICF+ + K+ D + R A G I+ ++GQ +G Sbjct: 175 EKPEVRRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHVGE 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ +P +VV D ++ ++V L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGGDDPWYVVDKDVANNILLVAQGHEHPRLMSVGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366 ++W+ + V F+C VK R Q +P V DD V V F++ V GQ+ V Sbjct: 293 LHWVD----REPVTAAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDEPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 349 FYQGEV----CLGGGIIE 362 >gi|255975449|ref|ZP_05426035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis T2] gi|256961498|ref|ZP_05565669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis Merz96] gi|293385188|ref|ZP_06631008.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis R712] gi|293388180|ref|ZP_06632702.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis S613] gi|307277736|ref|ZP_07558822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0860] gi|312908274|ref|ZP_07767238.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis DAPTO 512] gi|312910654|ref|ZP_07769495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis DAPTO 516] gi|255968321|gb|EET98943.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis T2] gi|256951994|gb|EEU68626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis Merz96] gi|291077561|gb|EFE14925.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis R712] gi|291082420|gb|EFE19383.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis S613] gi|306505615|gb|EFM74799.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0860] gi|310625688|gb|EFQ08971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis DAPTO 512] gi|311289030|gb|EFQ67586.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis DAPTO 516] Length = 374 Score = 496 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 135/389 (34%), Positives = 197/389 (50%), Gaps = 26/389 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V D I + +Y ++E+ + + V F + Y G TP P V CN+ +KF L QL Sbjct: 60 AKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R +D +DQ+YFL +Q QL FPLG M+ Sbjct: 120 GADYVATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQTQLAKTMFPLGGME 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS +CF+ + + + + A +G++V +G+I G+H Sbjct: 176 KSEVRAIAERAGLATAKKKDSTGVCFIGEKNFKEFLSNYLP--AKKGNMVTEDGEIKGQH 233 Query: 257 NGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 +G++ YTI G G G EP FV+ D ++ + VG E L + E++ Sbjct: 234 DGLMYYTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVH 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVF 367 + D + F C K R Q +PV V ++DG V F++ V GQA VF Sbjct: 294 FTVDT----PMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVF 349 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396 Y LGGG+I + + + + + Sbjct: 350 YDG----MECLGGGLIDRAYQDEKELQYV 374 >gi|261821429|ref|YP_003259535.1| tRNA-specific 2-thiouridylase MnmA [Pectobacterium wasabiae WPP163] gi|261605442|gb|ACX87928.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pectobacterium wasabiae WPP163] Length = 368 Score = 496 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 123/379 (32%), Positives = 194/379 (51%), Gaps = 29/379 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + ++ C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYHVEGLFMKNWEEDDDTE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R D + + R MD +DQSYFL+ +Q+ FP+G++ Sbjct: 120 LGADYIATGHYVRRH-----DVDGKSRLLRGMDGNKDQSYFLYTLGHEQIAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI-LG 254 +K VR +A E+ L A K DS ICF+ + K+ D + R A G I+ ++ +G Sbjct: 175 EKPQVRKIAEELELATAKKKDSTGICFIGERKFTDFLARYLP--AQPGPILSVDDNKPMG 232 Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 +H G++ +T+GQR+GLG+ +P +VV D ++ + V L + + + Sbjct: 233 QHQGLMYHTLGQRKGLGIGGVKDGGEDPWYVVDKDVANNILYVAQGHEHPRLMSYGLIAQ 292 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365 +++W+ + +C VK R Q +P V DD + V F++ V GQ+ Sbjct: 293 QLHWVD----RQPLTAELRCTVKTRYRQADIPCTVTPLGDDRITVRFDEPVAAVTPGQSA 348 Query: 366 VFYTSDSNEARVLGGGIIS 384 VFY D LGGGII Sbjct: 349 VFYLDDV----CLGGGIIE 363 >gi|257125929|ref|YP_003164043.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Leptotrichia buccalis C-1013-b] gi|257049868|gb|ACV39052.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Leptotrichia buccalis C-1013-b] Length = 364 Score = 496 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 129/375 (34%), Positives = 195/375 (52%), Gaps = 24/375 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + +VV+ MSGGVDSSV A LLK GYDVIGV ++ + + + G C A +D D Sbjct: 3 RRKKVVLGMSGGVDSSVAAILLKEQGYDVIGVFMKNWEEKDEN---GVCMAEEDYKDVIA 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + +Y ++ + + + V F Y G TP P V CN+ +KF L ++GA Sbjct: 60 VAEQLGIPYYSVNFVKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFRAFLDYAMKIGA 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R ++ DG+ + M R +D +DQ+YFL Q+QL + FPLG+ K Sbjct: 120 DYVATGHYARI-IHEEKDGEMKSTMLRGIDDNKDQTYFLCQLNQEQLEKVLFPLGEYTKP 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A + L A K DS ICF+ + + + + A G+IV+ G++LG HNG Sbjct: 179 KIREIAEKYNLATAKKKDSTGICFIGERDFNKFLSQYLP--AKGGNIVNTQGKVLGHHNG 236 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV--GPRESLEVHRIYLREINWL 311 ++ YTIGQR+G+G+ GEP FVV D + +IV G L + + N++ Sbjct: 237 LMYYTIGQRKGIGIGNTKEGTGEPWFVVDKDLEKNELIVTQGDNSVLYSKGLIATDFNFI 296 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTS 370 + F +C VK R Q + + N++ V F + + V GQ V Y Sbjct: 297 NEVQF------PLECTVKFRYRQKDTKAVISKLNENEYEVIFNEPQKAVTLGQIVVAYDG 350 Query: 371 DSNEARVLGGGIISG 385 + LGGGII Sbjct: 351 EV----CLGGGIIDK 361 >gi|205821993|sp|A6WP69|MNMA_SHEB8 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 372 Score = 496 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 126/385 (32%), Positives = 200/385 (51%), Gaps = 27/385 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ +V+V MSGGVDSSV A LL + GY V G+ ++ + ++ C A +D+ Sbjct: 4 IEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNE---YCAAAEDL 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 61 KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 120 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + L AD +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+ Sbjct: 121 DEILDADYIAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPV 176 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR++A+EMGL DK DS ICF+ + K+ + + A G+I G++ Sbjct: 177 GELEKHEVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEV 234 Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304 +G H G++ +T+GQR+GLG+ +P +VV D + +IV G L + Sbjct: 235 IGTHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMT 294 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363 + +++W+ VDG VK R Q VP + D+ + V F++ V GQ Sbjct: 295 VNQLHWVD----RTGPVDGCHIAVKTRYRQQDVPCTLTYTDEHTLRVVFDEPVAAVTPGQ 350 Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388 + VFY + LGGGII R Sbjct: 351 SAVFYDGEV----CLGGGIIDQLIR 371 >gi|229186636|ref|ZP_04313797.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus BGSC 6E1] gi|228596895|gb|EEK54554.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus BGSC 6E1] Length = 376 Score = 496 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 138/388 (35%), Positives = 203/388 (52%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 6 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A+E GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 178 ELKKPQIREMAKEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + + Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 295 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + E FKC K R Q+ V VQ +++ V + ++ + GQA VFY Sbjct: 296 WVSNEAKE----KEFKCTAKFRYRQEDNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 351 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I RS + L Sbjct: 352 GGD----ECLGGATIDEVYRSGKKLDYL 375 >gi|331017263|gb|EGH97319.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 366 Score = 496 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 126/382 (32%), Positives = 198/382 (51%), Gaps = 26/382 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VC Sbjct: 2 KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + + ++ + + V F Y AG TP P + CNR +KF L LGAD+ Sbjct: 59 DRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K V Sbjct: 119 IATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPQV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A K DS ICF+ + ++ D +++ A GDI G+++GRH+G++ Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGDIKTTEGEVIGRHSGLM 231 Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +TIGQR+GLG+ +P +V+ D +++ +IVG L + EI W+ Sbjct: 232 YHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 K K+R Q P +++ G F+ + V GQ+ VFY + Sbjct: 292 PIDLSSP----RKLTAKVRYRQSDQPCTLEKTAGGYRATFDDPQRAVTPGQSVVFYDGEI 347 Query: 373 NEARVLGGGIISGSKRSDAVEE 394 LGGG+I ++ + ++ Sbjct: 348 ----CLGGGVIEIAEPWTSKDK 365 >gi|39934381|ref|NP_946657.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris CGA009] gi|39648230|emb|CAE26749.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodopseudomonas palustris CGA009] Length = 401 Score = 496 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 214/382 (56%), Positives = 278/382 (72%), Gaps = 4/382 (1%) Query: 5 EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64 LNSLDL+ P+D RVVVAMSGGVDSS AALLK GYDV+G+TLQLY+ +A RK Sbjct: 2 TEPMLNSLDLEGRPQDTRVVVAMSGGVDSSATAALLKAQGYDVVGITLQLYDHGEAIHRK 61 Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 G+CCAGQD++DAR V + I + HYV DYE RFR +VI FA SYA+GETP+PC++CNR+V Sbjct: 62 GACCAGQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYASGETPVPCIECNRSV 121 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 KF DLL+ R+LGA LATGHY+ SR DDG R + D +RDQSYFLFATT++Q Sbjct: 122 KFRDLLATARELGASALATGHYVSSRRL--DDGS--RALVCAADRDRDQSYFLFATTREQ 177 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 L LRFPLGDM K R+LAR+ GL +ADK DSQDICFV G+Y DVV+R+ GD Sbjct: 178 LQFLRFPLGDMTKPQTRELARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGD 237 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 IV ++G++LG+H GI+++T+GQRRGLG+A PL+V+ LD +V+VGPRE+L + RI Sbjct: 238 IVDVDGRVLGQHPGIVHFTVGQRRGLGIASRSPLYVLRLDAAQRQVVVGPREALLMDRIV 297 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 LR+INW+GDG +D + DG + FV++RS++ P P +++ + G V+ E GV+ GQA Sbjct: 298 LRDINWIGDGSLDDVIGDGLELFVRVRSTRAPQPAWLRAANGGYEVELVVGEEGVSPGQA 357 Query: 365 CVFYTSDSNEARVLGGGIISGS 386 CVFY + +ARVLGGG I + Sbjct: 358 CVFYDAAEGQARVLGGGFIKSA 379 >gi|192289904|ref|YP_001990509.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris TIE-1] gi|192283653|gb|ACF00034.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodopseudomonas palustris TIE-1] Length = 401 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 214/382 (56%), Positives = 278/382 (72%), Gaps = 4/382 (1%) Query: 5 EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64 LNSLDL+ P+D RVVVAMSGGVDSS AALLK GYDV+G+TLQLY+ +A RK Sbjct: 2 TEPMLNSLDLEGRPQDTRVVVAMSGGVDSSATAALLKAQGYDVVGITLQLYDHGEAIHRK 61 Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 G+CCAGQD++DAR V + I + HYV DYE RFR +VI FA SYA+GETP+PC++CNR+V Sbjct: 62 GACCAGQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYASGETPVPCIECNRSV 121 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 KF DLL+ R+LGA LATGHY+ SR DDG R + D +RDQSYFLFATT++Q Sbjct: 122 KFRDLLATARELGASALATGHYVSSRRL--DDGS--RALVCAADRDRDQSYFLFATTREQ 177 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 L LRFPLGDM K R+LAR+ GL +ADK DSQDICFV G+Y DVV+R+ GD Sbjct: 178 LQFLRFPLGDMTKPQTRELARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGD 237 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 IV ++G++LG+H GI+++T+GQRRGLG+A PL+V+ LD +V+VGPRE+L + RI Sbjct: 238 IVDVDGRVLGQHPGIVHFTVGQRRGLGIASRSPLYVLRLDAARRQVVVGPREALLMDRIV 297 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 LR+INW+GDG +D + DG + FV++RS++ P P +++ + G V+ E GV+ GQA Sbjct: 298 LRDINWIGDGALDDVIGDGLELFVRVRSTRAPQPAWLRAANGGYEVELVVGEEGVSPGQA 357 Query: 365 CVFYTSDSNEARVLGGGIISGS 386 CVFY + +ARVLGGG I + Sbjct: 358 CVFYDAAEGQARVLGGGFIKSA 379 >gi|295396917|ref|ZP_06807041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aerococcus viridans ATCC 11563] gi|294974851|gb|EFG50554.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aerococcus viridans ATCC 11563] Length = 378 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 134/388 (34%), Positives = 198/388 (51%), Gaps = 25/388 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 + K+ RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D Sbjct: 4 NNPNKNTRVVVGMSGGVDSSVTALLLKQQGYDVIGIFMKNWDD---TDENGFCTATEDYK 60 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 D V I + +Y ++E+ + + V F Y TP P V CN+ +KF L Sbjct: 61 DVAAVAAQIGIPYYSINFEKEYWDKVFTYFLDEYKRDRTPNPDVMCNKEIKFKAFLDYAL 120 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 +LGAD +ATGHY + V D K + M R +D +DQ+YFL +Q QL + FPLG Sbjct: 121 ELGADYVATGHYAQ----VERDAKGKVHMLRGLDNNKDQTYFLNQLSQDQLQRVMFPLGH 176 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K VR +A E GL A K DS ICF+ + + + + A G ++ +G ++G Sbjct: 177 LEKPEVRRIAEEAGLATAKKKDSTGICFIGEKNFKEFLGNFLP--AQPGKMIAEDGTVMG 234 Query: 255 RHNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLRE 307 H G++ YTIGQR+GLG+ +P FVV D+ + + VG + L + + Sbjct: 235 DHMGLMYYTIGQRKGLGIGGGGESDQPWFVVGKDQAKNVLYVGQGFHNDKLYADYLMASD 294 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 ++++ D + F C K R Q V V N+DG + F + + GQA V Sbjct: 295 LSFVDD----EFTATSFDCTAKFRYRQKDTQVHVDINEDGTAKITFAEPVRAITPGQAVV 350 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEE 394 FY LGGG I + ++ V E Sbjct: 351 FYDG----PECLGGGTIDAAFKNSEVAE 374 >gi|315221594|ref|ZP_07863514.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus anginosus F0211] gi|315189428|gb|EFU23123.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus anginosus F0211] Length = 373 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 131/386 (33%), Positives = 198/386 (51%), Gaps = 25/386 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 5 SKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAA 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGA Sbjct: 62 VADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGA 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R++ D M R +D +DQ+YFL +Q+QL FPLG ++K Sbjct: 122 DYVATGHYARAKR----DEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLEKS 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A + GL A K DS ICF+ + + + + A G ++ ++G+ +G H G Sbjct: 178 EVRAIAEKAGLATAKKKDSTGICFIGEKNFKEFLGNYLP--AQPGRMMTVDGRDMGEHAG 235 Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 ++ YTIGQR GLG+ EP FVV D + + + VG ++L + ++++ Sbjct: 236 LMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQVHF 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 + E +C K R Q V V D V+F + + + GQA VFY Sbjct: 296 TREIPAE----FTMECTAKFRYRQPDSKVTVTVKGDKAIVNFAEPQRAITPGQAVVFYDE 351 Query: 371 DSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + + +++ + Sbjct: 352 E----ECLGGGLIDNAYKDGKLQQYI 373 >gi|218891213|ref|YP_002440079.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa LESB58] gi|226704774|sp|B7UV15|MNMA_PSEA8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|218771438|emb|CAW27205.1| tRNA methyltransferase [Pseudomonas aeruginosa LESB58] Length = 375 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 127/384 (33%), Positives = 201/384 (52%), Gaps = 26/384 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 P+ RV+V MSGGVDSSV A LL + GY V G+ ++ ++ ++ C A +D+ Sbjct: 5 APTPRRERVIVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWDEDDGTE---YCTAREDLA 61 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ VCD I + + ++ + + V F + Y AG TP P + CNR +KF L Sbjct: 62 DAQAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYAL 121 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+ Sbjct: 122 MLGADLIATGHYVRRR-----DRDGRTELLKGLDPNKDQSYFLHAVGGEQIARSLFPVGE 176 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K VR +A + GL A K DS ICF+ + ++ D +K+ A GDI + G+++G Sbjct: 177 LEKPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLKQYLP--AQPGDIETIEGKVIG 234 Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 RH+G++ +TIGQR+GLG+ +P +V+ D + ++VG L + Sbjct: 235 RHSGLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLAS 294 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 I W+ E + K+R Q +++ +G F++ + V GQ+ V Sbjct: 295 RIYWVNPVELERP----RRLRAKVRYRQSDQDCVLEKTAEGYRAVFDEPQRAVTPGQSVV 350 Query: 367 FYTSDSNEARVLGGGIISGSKRSD 390 FY D LGGG+I ++ D Sbjct: 351 FYDGDV----CLGGGVIETAEAWD 370 >gi|320323780|gb|EFW79864.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. glycinea str. B076] gi|320327920|gb|EFW83925.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. glycinea str. race 4] Length = 366 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 126/382 (32%), Positives = 198/382 (51%), Gaps = 26/382 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VC Sbjct: 2 KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + + ++ + + V F Y AG TP P + CNR +KF L LGAD+ Sbjct: 59 DKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K V Sbjct: 119 IATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH+G++ Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLM 231 Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +TIGQR+GLG+ +P +V+ D +++ +IVG L + EI W Sbjct: 232 YHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWAN 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 K K+R Q P +++ DG F+ + V GQ+ VFY + Sbjct: 292 PIDLSSP----RKLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI 347 Query: 373 NEARVLGGGIISGSKRSDAVEE 394 LGGG+I ++ + ++ Sbjct: 348 ----CLGGGVIEIAEPWTSKDK 365 >gi|15597822|ref|NP_251316.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa PAO1] gi|107102147|ref|ZP_01366065.1| hypothetical protein PaerPA_01003197 [Pseudomonas aeruginosa PACS2] gi|116050613|ref|YP_790568.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa UCBPP-PA14] gi|14195276|sp|Q9I0L2|MNMA_PSEAE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|122259736|sp|Q02NB8|MNMA_PSEAB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|9948693|gb|AAG06014.1|AE004691_5 tRNA methyltransferase [Pseudomonas aeruginosa PAO1] gi|115585834|gb|ABJ11849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas aeruginosa UCBPP-PA14] Length = 375 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 127/384 (33%), Positives = 200/384 (52%), Gaps = 26/384 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 P+ RV+V MSGGVDSSV A LL + GY V G+ ++ ++ ++ C A +D+ Sbjct: 5 APTPRRERVIVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWDEDDGTE---YCTAREDLA 61 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ VCD I + + ++ + + V F + Y AG TP P + CNR +KF L Sbjct: 62 DAQAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYAL 121 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+ Sbjct: 122 MLGADLIATGHYVRRR-----DRDGRTELLKGLDPNKDQSYFLHAVGGEQIARSLFPVGE 176 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K VR +A + GL A K DS ICF+ + ++ D +K+ A GDI G+++G Sbjct: 177 LEKPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLKQYLP--AQPGDIETTEGKVIG 234 Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 RH+G++ +TIGQR+GLG+ +P +V+ D + ++VG L + Sbjct: 235 RHSGLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLAS 294 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 I W+ E + K+R Q +++ +G F++ + V GQ+ V Sbjct: 295 RIYWVNPVELERP----RRLRAKVRYRQSDQDCVLEKTAEGYRAVFDEPQRAVTPGQSVV 350 Query: 367 FYTSDSNEARVLGGGIISGSKRSD 390 FY D LGGG+I ++ D Sbjct: 351 FYDGDV----CLGGGVIETAEAWD 370 >gi|125719134|ref|YP_001036267.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus sanguinis SK36] gi|166235087|sp|A3CRB2|MNMA_STRSV RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|125499051|gb|ABN45717.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Streptococcus sanguinis SK36] Length = 373 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 133/388 (34%), Positives = 198/388 (51%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQVKR----DQDGLVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + + + A G ++ L G+ +G+H Sbjct: 176 KPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ EP FVV D + + + VG ++L + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V D V+F+K + + GQ VFY Sbjct: 294 HFTKEMPEE----FTMECTAKFRYRQPDSKVTVTVKGDKAVVNFDKPQRAITPGQGVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGGG+I + ++ V + + Sbjct: 350 DGD----ECLGGGLIDRAYKNGQVLQYI 373 >gi|167623646|ref|YP_001673940.1| tRNA-specific 2-thiouridylase MnmA [Shewanella halifaxensis HAW-EB4] gi|189040508|sp|B0TQ02|MNMA_SHEHH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|167353668|gb|ABZ76281.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella halifaxensis HAW-EB4] Length = 371 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 128/380 (33%), Positives = 195/380 (51%), Gaps = 28/380 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A D+ DA+ V Sbjct: 10 GKKVIVGMSGGVDSSVSAYLLMKQGYQVEGLFMKNWEEDDTDE---YCAAADDLKDAQAV 66 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGA 138 CD + + + ++ + + V F + Y AG TP P + CN+ +KF L + L A Sbjct: 67 CDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDA 126 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +A GHY+R R D M R +D +DQSYFL+ +Q+ FP+G+++K Sbjct: 127 DYIAMGHYVRRR-----DIDGTSQMLRGIDGNKDQSYFLYTLGHEQVARSLFPVGELEKS 181 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+EMGL DK DS ICF+ + K+ D ++ A G+I G+++G H G Sbjct: 182 EVREIAKEMGLITHDKKDSTGICFIGERKFTDFLQTFLP--AQPGNIETSEGEVIGTHQG 239 Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 ++ +T+GQR+GLG+ +P +VV D + +IVG L + + +++W Sbjct: 240 LMYHTLGQRKGLGIGGLKNSNEDPWYVVEKDLVRNVLIVGQGGNHPRLMSNGLIANQLHW 299 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYT 369 + DG VK R Q VP V + DD + V F++ V GQ+ VFY Sbjct: 300 VD----RKGPADGSNITVKTRYRQQDVPCRVTYDSDDILRVIFDEPVAAVTPGQSAVFYD 355 Query: 370 SDSNEARVLGGGIISGSKRS 389 + LGGGII R Sbjct: 356 GEI----CLGGGIIDALIRD 371 >gi|283770696|ref|ZP_06343588.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp. aureus H19] gi|283460843|gb|EFC07933.1| tRNA-specific 2-thiouridylase mnmA [Staphylococcus aureus subsp. aureus H19] Length = 372 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 135/379 (35%), Positives = 204/379 (53%), Gaps = 20/379 (5%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + KD+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D D Sbjct: 2 SNKDIRVVVGMSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L L Sbjct: 59 IEVCNQIGIPYYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R + M R +D +DQ+YFL +QQQL + FP+GD++ Sbjct: 119 GADYVATGHYTRIHRH----EDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIE 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A E GL A K DS ICF+ + + + + A GD++ L+G+ +G+H Sbjct: 175 KSEVRRIAEEQGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKH 232 Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +G++ YTIGQR GLG+ G+P FVV + + + V ++L + + +++ Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFVN 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371 ++ + GF+C K R Q VFV+R +D + V F + + GQA VFY D Sbjct: 293 PE--DNDLDQGFECTAKFRYRQKDTKVFVKRENDHALRVTFAELVRAITPGQAVVFYQGD 350 Query: 372 SNEARVLGGGIISGSKRSD 390 LGG I +++ Sbjct: 351 V----CLGGATIDDVFKNE 365 >gi|251789549|ref|YP_003004270.1| tRNA-specific 2-thiouridylase MnmA [Dickeya zeae Ech1591] gi|247538170|gb|ACT06791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dickeya zeae Ech1591] Length = 372 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 123/386 (31%), Positives = 199/386 (51%), Gaps = 29/386 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + ++ C A D+ DA Sbjct: 5 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDDTE---YCSAATDLADA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 62 QAVCDKLGIELHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFAAED 121 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R D + + R +D +DQSYFL+ + QQL FP+G++ Sbjct: 122 LGADYIATGHYVRRH-----DIDGKSHLLRGLDGNKDQSYFLYTLSHQQLAQSLFPVGEL 176 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254 +K VR +A ++ L A K DS ICF+ + K+ D + R A G I+ + +G+++G Sbjct: 177 EKPQVRKIAEQLSLATARKKDSTGICFIGERKFRDFLARYLP--AQPGPILSVDDGKVMG 234 Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 H G++ +T+GQR+GLG+ +P +VV D + + V L + + Sbjct: 235 EHQGLMYHTLGQRKGLGIGGVKEGGDDPWYVVDKDVAGNVLYVAQGHEHPRLMSVGLIAQ 294 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQAC 365 +++W+ + + +C VK R Q +P + D D + V F++ V GQ+ Sbjct: 295 QLHWVD----REPLAAPLRCTVKTRYRQADIPCLLTPLDADRIEVRFDEPVAAVTPGQSA 350 Query: 366 VFYTSDSNEARVLGGGIISGSKRSDA 391 VFY + LGGGII R+ Sbjct: 351 VFYLGEV----CLGGGIIEERLRAAQ 372 >gi|258510943|ref|YP_003184377.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477669|gb|ACV57988.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 365 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 138/379 (36%), Positives = 198/379 (52%), Gaps = 26/379 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RVVV MSGGVDSSV A LLK+ GYDVIGV ++ ++ + G+C A QD D RRVC Sbjct: 3 TRVVVGMSGGVDSSVTALLLKQAGYDVIGVFMKNWDE---TDENGACTAEQDFEDVRRVC 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + I + +Y ++E + V F + G TP P V CNR +KF +LL+ LGAD Sbjct: 60 EQIGIPYYGVNFEREYEERVFQHFLEEFKRGRTPNPDVLCNREIKFKELLACALDLGADY 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY + R D + R D +DQ+YFL TQ L FP+G + K V Sbjct: 120 LATGHYAQVRK----DEDGTVALLRGRDKNKDQTYFLHMLTQAPLRRAMFPIGHLTKPEV 175 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +AR+ GL +A K DS ICF+ + + +++ A G I ++G++LG H+G++ Sbjct: 176 RQIARDHGLHVAQKKDSTGICFIGERNFRAFLQQYLP--AQPGLIEDVDGRVLGEHDGLM 233 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YTIGQR+GL + P FVV D + ++V L + ++++ Sbjct: 234 YYTIGQRKGLRLGGLPGRDPAPWFVVDKDLARNVLVVAQGHDHPRLYSRALTADTVSFVA 293 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSD 371 E F+C K R QD PV V+ +D V F++ + + GQ+ VFY + Sbjct: 294 ----ERPPAKRFRCTAKFRYRQDEQPVEVEMTGEDTCRVIFDEPQRAITPGQSVVFYDGE 349 Query: 372 SNEARVLGGGIISGSKRSD 390 LGGGII+ + D Sbjct: 350 V----CLGGGIIASREPVD 364 >gi|254241058|ref|ZP_04934380.1| tRNA methyltransferase [Pseudomonas aeruginosa 2192] gi|126194436|gb|EAZ58499.1| tRNA methyltransferase [Pseudomonas aeruginosa 2192] Length = 375 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 127/384 (33%), Positives = 200/384 (52%), Gaps = 26/384 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 P+ RV+V MSGGVDSSV A LL + GY V G+ ++ ++ ++ C A +D+ Sbjct: 5 APTPRRERVIVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWDEDDGTE---YCTAREDLA 61 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ VCD I + + ++ + + V F + Y AG TP P + CNR +KF L Sbjct: 62 DAQAVCDRIGIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYAL 121 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD++ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+ Sbjct: 122 MLGADLIATGHYVRRR-----DRDGRTELLKGLDPNKDQSYFLHAVGGEQIARSLFPVGE 176 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K VR +A + GL A K DS ICF+ + ++ D +K+ A GDI G+++G Sbjct: 177 LEKPEVRAIAEKHGLATAKKKDSTGICFIGERRFTDFLKQYLP--AQPGDIETTEGKVIG 234 Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 RH+G++ +TIGQR+GLG+ +P +V+ D + ++VG L + Sbjct: 235 RHSGLMYHTIGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLAS 294 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 I W+ E + K+R Q +++ +G F++ + V GQ+ V Sbjct: 295 RIYWVNPVELERP----RRLRAKVRYRQSDQDCVLEKTTEGYRAVFDEPQRAVTPGQSVV 350 Query: 367 FYTSDSNEARVLGGGIISGSKRSD 390 FY D LGGG+I ++ D Sbjct: 351 FYDGDV----CLGGGVIETAEAWD 370 >gi|218289827|ref|ZP_03494027.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alicyclobacillus acidocaldarius LAA1] gi|218240118|gb|EED07303.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alicyclobacillus acidocaldarius LAA1] Length = 365 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 140/379 (36%), Positives = 201/379 (53%), Gaps = 26/379 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RVVV MSGGVDSSV A LLK+ GYDVIGV ++ ++ + G+C A QD D RRVC Sbjct: 3 TRVVVGMSGGVDSSVTALLLKQAGYDVIGVFMKNWDE---TDENGACTAEQDFEDVRRVC 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + I + +Y ++E + V F + G TP P V CNR +KF +LL+ LGAD Sbjct: 60 EQIGIPYYGVNFEREYEERVFQHFLEEFRRGRTPNPDVLCNREIKFKELLACALDLGADY 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY + R +DG + R D +DQ+YFL TQ L FP+G + K V Sbjct: 120 LATGHYAQVRQL--EDGSV--ALVRGRDKNKDQTYFLHMLTQAPLRRAMFPIGHLTKPEV 175 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +AR+ GL +A K DS ICF+ + + +++ A G I ++G++LG H+G++ Sbjct: 176 RQIARDHGLHVAQKKDSTGICFIGERNFRAFLQQYLP--AQPGLIEDVDGRVLGEHDGLM 233 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YTIGQR+GL + P FVV D + ++V L + ++++ Sbjct: 234 YYTIGQRKGLRLGGLPGRDPAPWFVVDKDLARNVLVVAQGHDHPRLYSRALSADTVSFVA 293 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSD 371 E + F+C K R QD PV V+ +D V F++ + + GQ+ VFY D Sbjct: 294 ----ERPPAERFRCTAKFRYRQDDQPVKVEMTGEDTCRVIFDEPQRAITPGQSVVFYDGD 349 Query: 372 SNEARVLGGGIISGSKRSD 390 LGGGII+ + D Sbjct: 350 I----CLGGGIIASREPVD 364 >gi|238754412|ref|ZP_04615768.1| tRNA-specific 2-thiouridylase mnmA [Yersinia ruckeri ATCC 29473] gi|238707445|gb|EEP99806.1| tRNA-specific 2-thiouridylase mnmA [Yersinia ruckeri ATCC 29473] Length = 371 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 126/379 (33%), Positives = 194/379 (51%), Gaps = 28/379 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDNEE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R D + + R +D +DQSYFL+ QL FP+G++ Sbjct: 120 LGADYIATGHYVRRH-----DVNGKSQLLRGLDSNKDQSYFLYTLGHDQLAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + L A K DS ICF+ + K+ D + R A G I+ ++GQ LG Sbjct: 175 EKPEVRRIAETLDLVTAKKKDSTGICFIGERKFRDFLARYLP--AQPGQILSVDGQYLGE 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ +P +VV D ++ ++V L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGGDDPWYVVDKDVANNVLVVAQGHEHPRLMSTGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366 ++W+ V+ F+C VK R Q +P V DD + V F++ V GQ+ V Sbjct: 293 LHWVD----RQTVIAPFRCVVKTRYRQQDIPCTVTPLDDERIDVCFDQPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIISG 385 FY + LGGGII Sbjct: 349 FYQGEV----CLGGGIIES 363 >gi|330833760|ref|YP_004402585.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis ST3] gi|329307983|gb|AEB82399.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus suis ST3] Length = 419 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 133/391 (34%), Positives = 196/391 (50%), Gaps = 25/391 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 46 MSIDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGFCTATEDY 102 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 103 KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYA 162 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG Sbjct: 163 MNLGADYVATGHYAQ----VSRDEDGTVHMLRGADNGKDQTYFLSQLSQEQLQKTMFPLG 218 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR++A GL A K DS ICF+ + + + + + A G ++ ++G+ + Sbjct: 219 HLQKPQVREIAERAGLATAKKKDSTGICFIGEKNFKEFLGQYLP--AQPGRMMTVDGRDM 276 Query: 254 GRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 G H G++ YTIGQR GLG+ EP FVV D + + + VG ESL + Sbjct: 277 GEHTGLMYYTIGQRGGLGIGGQIGGDNEPWFVVGKDLSKNILYVGQGFYHESLMSTSLQA 336 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 ++++ D E +C K R Q V V+ D V F + + + G+A Sbjct: 337 SQVHFTRDMPEEFK----LECTAKFRYRQPDSQVTVKVKGDKAEVIFAEPQRAITPGKAV 392 Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEESL 396 VFY LGGG+I + + + + Sbjct: 393 VFYDG----QECLGGGMIDMAYKDGEACQYI 419 >gi|238894182|ref|YP_002918916.1| tRNA-specific 2-thiouridylase MnmA [Klebsiella pneumoniae NTUH-K2044] gi|238546498|dbj|BAH62849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 388 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 124/394 (31%), Positives = 203/394 (51%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 ++ A++ N + + +V+V MSGGVDSSV A LL + GY V G+ ++ + Sbjct: 6 VLEYAASKFNVASISMSESQKKVIVGMSGGVDSSVSAYLLLQQGYKVGGLFMKNWEEDDG 65 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + C Sbjct: 66 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILC 122 Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L LGAD +ATGHY+R D + + R +D +DQSYFL+ Sbjct: 123 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSQLLRGLDGNKDQSYFLYT 177 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR +A E+ L A K DS ICF+ + K+ D + R Sbjct: 178 LSHEQIAQSLFPVGELEKPQVRKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP-- 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP 294 A G I+ ++G+ +G H G++ +T+GQR+GLG+ +P +VV D ++ +IV Sbjct: 236 AQPGKILTVDGEEIGTHQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQ 295 Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350 L + ++++W+ + + +C VK R Q +P V ++D + V Sbjct: 296 GHDHPRLMSVGLIAQQLHWVN----REPLQGTLRCTVKTRYRQTDIPCTVTALDEDRIEV 351 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY + LGGGII Sbjct: 352 RFDEPVAAVTPGQSAVFYLGEV----CLGGGIIE 381 >gi|123442025|ref|YP_001006008.1| tRNA-specific 2-thiouridylase MnmA [Yersinia enterocolitica subsp. enterocolitica 8081] gi|205828986|sp|A1JLK6|MNMA_YERE8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|122088986|emb|CAL11797.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 373 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 126/378 (33%), Positives = 197/378 (52%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + D + + R +D +DQSYFL+ + +QL FP+G++ Sbjct: 120 LGADYIATGHYVRRQ-----DVNGKSRLLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++ L A K DS ICF+ + K+ D + R A G I+ ++GQ +G Sbjct: 175 EKPEVRRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHVGE 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ +P +VV D ++ ++V L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGGDDPWYVVDKDVANNILLVAQGHEHPRLMSVGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366 ++W+ + V F+C VK R Q +P V DD V V F+ V GQ+ V Sbjct: 293 LHWVD----REPVTAAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDDPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 349 FYQGEV----CLGGGIIE 362 >gi|328473137|gb|EGF43985.1| tRNA-specific 2-thiouridylase MnmA [Vibrio parahaemolyticus 10329] Length = 374 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 123/380 (32%), Positives = 197/380 (51%), Gaps = 28/380 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 60 QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY+R + + M R +D +DQSYFL+ + +Q+ FP+GD+ Sbjct: 120 LEADYIAMGHYVRRSF---PENGEKPQMLRGLDSNKDQSYFLYTLSHEQVARSLFPVGDL 176 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL A K DS ICF+ + K+ + + R A G+I G+++G+ Sbjct: 177 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGK 234 Query: 256 HNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 H G++ +T+GQR+GL + +P FV D + + +I L+ + Sbjct: 235 HQGLMYHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLDRNVLIAVQGKDHPMLKSEGLLA 294 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQA 364 +++W+ + + D KC VK R Q +P + DD + V F++ ++ V GQ+ Sbjct: 295 SQLHWVD----REPIRDVMKCTVKTRYRQQDIPCTIIPIDDENIKVIFDEPQIAVTPGQS 350 Query: 365 CVFYTSDSNEARVLGGGIIS 384 VFY D LGGGII Sbjct: 351 AVFYKDDV----CLGGGIIE 366 >gi|157693155|ref|YP_001487617.1| tRNA-specific 2-thiouridylase MnmA [Bacillus pumilus SAFR-032] gi|194017112|ref|ZP_03055724.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus pumilus ATCC 7061] gi|166991121|sp|A8FFP0|MNMA_BACP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|157681913|gb|ABV63057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus pumilus SAFR-032] gi|194010980|gb|EDW20550.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus pumilus ATCC 7061] Length = 372 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 139/388 (35%), Positives = 199/388 (51%), Gaps = 21/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K P+D RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MTKRPEDTRVVVGMSGGVDSSVAALMLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 EDVIRVCNQIGIPYYAVNFEKQYWDKVFQYFLDEYKAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY R D M R +D +DQ+YFL TQ+QL + FP+G Sbjct: 118 LSLGADYLATGHYARV-----DRTGDEVKMLRGLDANKDQTYFLNQLTQEQLDKVMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 D++K+ VR+LA+E L A K DS ICF+ + + + + A G + ++G++ Sbjct: 173 DLEKKRVRELAKEAELATATKKDSTGICFIGERNFKTFLSQYLP--AQPGVMQTMDGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G H+G++ YTIGQR+GLG+ G+P FVV D + + V L I I+ Sbjct: 231 GEHDGLMYYTIGQRQGLGIGGSGDPWFVVGKDLEQNILFVEQGFHNPLLYSESISAVNIS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368 W + + C K R Q+ V V+ + V F++ V GQA VFY Sbjct: 291 WTRPHIVGEN--GELTCTAKFRYRQEDHHVKVKMTGEQEAMVIFDEPVRAVTPGQAVVFY 348 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGGG I + + Sbjct: 349 DGD----ECLGGGTIDDVFKDGQKLSYV 372 >gi|27366203|ref|NP_761731.1| tRNA-specific 2-thiouridylase MnmA [Vibrio vulnificus CMCP6] gi|30173408|sp|Q8CWJ6|MNMA_VIBVU RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|27362403|gb|AAO11258.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio vulnificus CMCP6] Length = 374 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 128/381 (33%), Positives = 198/381 (51%), Gaps = 28/381 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LLK+ GY V G+ ++ + S+ C A +D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDDSE---YCTAAEDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 60 QAVCDKLGIHLHKINFASEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY+R + + M R +D +DQSYFL+ + +Q+ FP+GD+ Sbjct: 120 LDADYIAMGHYVRRSF---PENGEKPQMLRGLDGNKDQSYFLYTLSHEQVARSLFPVGDL 176 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL A K DS ICF+ + K+ D + R A G+I G++LG+ Sbjct: 177 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGNIESPEGEVLGQ 234 Query: 256 HNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRV--IVGP-RESLEVHRIYL 305 H G++ +T+GQR+GL + EP FV D + + + G L+ + Sbjct: 235 HQGLMYHTLGQRKGLHIGGRKGGGGNEEPWFVAEKDLKRNVLIAVQGQDHPMLKSEGLIA 294 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQA 364 +++W+ + + D KC VK R Q +P + DD + V F++ E+ V GQ+ Sbjct: 295 SQLHWV----EREPIRDVVKCTVKTRYRQQDIPCTIIPIDDENIKVIFDEPEIAVTPGQS 350 Query: 365 CVFYTSDSNEARVLGGGIISG 385 VFY D LGGGII Sbjct: 351 AVFYQGDV----CLGGGIIEK 367 >gi|149908394|ref|ZP_01897057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Moritella sp. PE36] gi|149808557|gb|EDM68492.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Moritella sp. PE36] Length = 379 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 122/379 (32%), Positives = 192/379 (50%), Gaps = 28/379 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A +D+ DA+ VC Sbjct: 17 KKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEDDDNDE---YCAAAEDLADAQAVC 73 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L + L AD Sbjct: 74 DKLGIELHAINFSAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLQFASEVLAAD 133 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +A GHY+ R + M R +D +DQSYFL+ Q+ FP+G+++K Sbjct: 134 YIAMGHYVSRRQTAD----GKFEMLRGLDSNKDQSYFLYTLDHVQVSRSLFPVGELEKPE 189 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E GL A+K DS ICF+ + K+ + + + A G I ++G+ +G H G+ Sbjct: 190 VRRIAEEQGLITANKKDSTGICFIGERKFTEFLSKYLP--AQPGKIESVDGEEIGEHQGL 247 Query: 260 INYTIGQRRGLGVAM------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + +T+GQR+GL + EP +VV D + ++V L + +++W Sbjct: 248 MYHTLGQRKGLHIGGMKNNNNQEPWYVVDKDMERNVLLVAQGHNHPRLFSTGLMASQLHW 307 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + + + +C VK R Q VP V +D + V F+K E+ V GQ+ VFY Sbjct: 308 IS----REPLTQPLRCTVKTRYRQTDVPCLVTPIGEDQIEVTFDKPELAVTPGQSAVFYL 363 Query: 370 SDSNEARVLGGGIISGSKR 388 D LGG II R Sbjct: 364 DDV----CLGGAIIDVQIR 378 >gi|148996542|ref|ZP_01824260.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP11-BS70] gi|307066804|ref|YP_003875770.1| putative tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Streptococcus pneumoniae AP200] gi|147757117|gb|EDK64156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae SP11-BS70] gi|306408341|gb|ADM83768.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Streptococcus pneumoniae AP200] Length = 373 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 135/388 (34%), Positives = 194/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ +G H Sbjct: 176 KPEVRRLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV + + + VG +SL + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKALSKNILYVGQGFYHDSLMSTSLEASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E +C K R Q V V + V F + + + GQA VFY Sbjct: 294 HFTRDMPEE----FTLECTAKFRYRQPDSKVTVHVKGEKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373 >gi|153838264|ref|ZP_01990931.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio parahaemolyticus AQ3810] gi|161511058|ref|NP_797509.2| tRNA-specific 2-thiouridylase MnmA [Vibrio parahaemolyticus RIMD 2210633] gi|260364461|ref|ZP_05777086.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio parahaemolyticus K5030] gi|260877061|ref|ZP_05889416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio parahaemolyticus AN-5034] gi|260896850|ref|ZP_05905346.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio parahaemolyticus Peru-466] gi|260902426|ref|ZP_05910821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio parahaemolyticus AQ4037] gi|32130287|sp|Q87QL9|MNMA_VIBPA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|149748319|gb|EDM59178.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio parahaemolyticus AQ3810] gi|308087006|gb|EFO36701.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio parahaemolyticus Peru-466] gi|308093683|gb|EFO43378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio parahaemolyticus AN-5034] gi|308110639|gb|EFO48179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio parahaemolyticus AQ4037] gi|308114601|gb|EFO52141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio parahaemolyticus K5030] Length = 374 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 123/380 (32%), Positives = 197/380 (51%), Gaps = 28/380 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 60 QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY+R + + M R +D +DQSYFL+ + +Q+ FP+GD+ Sbjct: 120 LEADYIAMGHYVRRSF---PENGEKPQMLRGLDSNKDQSYFLYTLSHEQVARSLFPVGDL 176 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL A K DS ICF+ + K+ + + R A G+I G+++G+ Sbjct: 177 EKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQ 234 Query: 256 HNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 H G++ +T+GQR+GL + +P FV D + + +I L+ + Sbjct: 235 HQGLMYHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLDRNVLIAVQGKDHPMLKSEGLLA 294 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQA 364 +++W+ + + D KC VK R Q +P + DD + V F++ ++ V GQ+ Sbjct: 295 SQLHWVD----REPIRDVMKCTVKTRYRQQDIPCTIIPIDDENIKVIFDEPQIAVTPGQS 350 Query: 365 CVFYTSDSNEARVLGGGIIS 384 VFY D LGGGII Sbjct: 351 AVFYKDDV----CLGGGIIE 366 >gi|238749636|ref|ZP_04611141.1| tRNA-specific 2-thiouridylase mnmA [Yersinia rohdei ATCC 43380] gi|238712291|gb|EEQ04504.1| tRNA-specific 2-thiouridylase mnmA [Yersinia rohdei ATCC 43380] Length = 373 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 125/378 (33%), Positives = 197/378 (52%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + D + + R +D +DQSYFL+ + +QL FP+G++ Sbjct: 120 LGADYIATGHYVRRQ-----DVDGKSRLLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++ L A K DS ICF+ + K+ D + R A G I+ ++G+ +G Sbjct: 175 EKPEVRRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGKHVGE 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ +P +VV D ++ ++V L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGGDDPWYVVDKDVANNILLVAQGHEHPRLMSVGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366 ++W+ V F+C VK R Q +P V DD V V F++ V GQ+ V Sbjct: 293 LHWVD----RQPVTAAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDEPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 349 FYQGEV----CLGGGIIE 362 >gi|257082170|ref|ZP_05576531.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis E1Sol] gi|256990200|gb|EEU77502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis E1Sol] Length = 374 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 135/389 (34%), Positives = 197/389 (50%), Gaps = 26/389 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V D I + +Y ++E+ + + V F + Y G TP P V CN+ +KF L QL Sbjct: 60 AKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAIQL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R +D +DQ+YFL +Q QL FPLG M+ Sbjct: 120 GADYVATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGME 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS +CF+ + + + + A +G++V +G+I G+H Sbjct: 176 KSEVRAIAERAGLATAKKKDSTGVCFIGEKNFKEFLSNYLP--AKKGNMVTEDGEIKGQH 233 Query: 257 NGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 +G++ YTI G G G EP FV+ D ++ + VG E L + E++ Sbjct: 234 DGLMYYTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVH 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVF 367 + D + F C K R Q +PV V ++DG V F++ V GQA VF Sbjct: 294 FTVDT----PMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVF 349 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396 Y LGGG+I + + + + + Sbjct: 350 YDG----MECLGGGLIDRAYQDEKELQYV 374 >gi|316935452|ref|YP_004110434.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodopseudomonas palustris DX-1] gi|315603166|gb|ADU45701.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodopseudomonas palustris DX-1] Length = 401 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 214/401 (53%), Positives = 280/401 (69%), Gaps = 10/401 (2%) Query: 5 EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64 LNSLDL+ P+D RVVVAMSGGVDSS AALLK GYDV+G+TLQLY+ A RK Sbjct: 2 TEPMLNSLDLEGRPQDTRVVVAMSGGVDSSATAALLKAQGYDVVGITLQLYDHGAAIHRK 61 Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 G+CCAGQD++DAR V + I + HYV DYE RFR +VI FA SYA+GETP+PC++CNR+V Sbjct: 62 GACCAGQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYASGETPVPCIECNRSV 121 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 KF DLL+ R+LGA LATGHY+ SR R + D +RDQSYFLFATT++Q Sbjct: 122 KFRDLLATARELGASALATGHYVSSRRL----ENGSRALVCAADRDRDQSYFLFATTREQ 177 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 L LRFPLGDM K R+LAR+ GL +ADK DSQDICFV G+Y DVV+R+ GD Sbjct: 178 LQFLRFPLGDMTKPQTRELARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGD 237 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 IV ++G++LG+H GI+++T+GQRRGLG+A PL+V+ LD +V+VGPRE+L + RI Sbjct: 238 IVDIDGRVLGQHPGIVHFTVGQRRGLGIASRAPLYVLRLDAARRQVVVGPREALLMDRIV 297 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 LR++NW+GDG +D V DG + FV++RS+++P P +++ + G V+ E GV+ GQA Sbjct: 298 LRDVNWIGDGALDDVVGDGLELFVRVRSTREPQPAWLRAANGGYEVELVVGEEGVSPGQA 357 Query: 365 CVFYTSDSNEARVLGGGIISGSKR------SDAVEESLLSV 399 CVFY + +ARVLGGG I + D +E L+ Sbjct: 358 CVFYDAAEGQARVLGGGFIKSAAPRRFEGGRDQIEAPALAA 398 >gi|91210289|ref|YP_540275.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli UTI89] gi|117623318|ref|YP_852231.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli APEC O1] gi|237706881|ref|ZP_04537362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia sp. 3_2_53FAA] gi|300982382|ref|ZP_07176080.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 200-1] gi|91071863|gb|ABE06744.1| probable ATPase YcfB [Escherichia coli UTI89] gi|115512442|gb|ABJ00517.1| putative ATPase [Escherichia coli APEC O1] gi|226898091|gb|EEH84350.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia sp. 3_2_53FAA] gi|300307219|gb|EFJ61739.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 200-1] gi|315287470|gb|EFU46881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 110-3] gi|315296602|gb|EFU55897.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 16-3] gi|324013226|gb|EGB82445.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 60-1] Length = 383 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 126/394 (31%), Positives = 203/394 (51%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 61 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L LGAD +ATGHY+R D + + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + + R Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294 A G I+ ++G +G H G++ +T+GQR+GLG+ EP +VV D ++ +IV Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQ 290 Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYV 350 L + ++++W+ + +C VK R Q +P V+ D D + V Sbjct: 291 GHEHPRLMSVGLIAQQLHWVD----REPFTGTMRCTVKTRYRQTDIPCTVKALDADRIEV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY + LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 376 >gi|290581402|ref|YP_003485794.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Streptococcus mutans NN2025] gi|254998301|dbj|BAH88902.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Streptococcus mutans NN2025] Length = 373 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 132/388 (34%), Positives = 200/388 (51%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R D +DQ+YFL +Q+QL + FPLG ++ Sbjct: 120 GADYVATGHYAQ----VSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLQ 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A + GL A K DS ICF+ + + + + A +G ++ ++G+ +G H Sbjct: 176 KPRVREIAEKAGLVTAKKKDSTGICFIGEKNFKEFLSSYLP--AQKGRMMTIDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 NG++ YTIGQR G+G+ P FVV D + + + VG ++L + ++ Sbjct: 234 NGLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSQNILYVGQGFYHDALMSTSLTASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + C K R Q V V+ N D V F++ + + GQA VFY Sbjct: 294 HFTQNM----PDKFTLNCTAKFRYRQPDSKVTVKVNGDKAEVIFDEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGGG+I + + + + + + Sbjct: 350 DGD----ECLGGGLIDNAYQEEKICQYI 373 >gi|77413211|ref|ZP_00789409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae 515] gi|77160751|gb|EAO71864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus agalactiae 515] Length = 373 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 139/388 (35%), Positives = 199/388 (51%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + ++RVVV MSGGVDSSV A LLK GYDVIG ++ ++ + G C A +D D Sbjct: 3 DNSNIRVVVGMSGGVDSSVTALLLKEQGYDVIGXFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQ----VTRDENGIVHMLRGADNNKDQTYFLSQLSQEQLQKTLFPLGHLQ 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A E GL A K DS ICF+ + + D + + A G ++ ++G+ +G H Sbjct: 176 KPEVRRIAEEAGLATAKKKDSTGICFIGEKNFKDFLGQYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ +P FVV D + + + VG +SL + EI Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNKPWFVVGKDLSKNILYVGQGFYHDSLMSTSLTASEI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E +C K R Q V V + V F+ + + GQA VFY Sbjct: 294 HFTRDMPNEFK----LECTAKFRYRQPDSKVTVYVKGNQARVVFDDLQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 NE LGGG+I + R D + + + Sbjct: 350 ----NEQECLGGGMIDQAYRDDKICQYI 373 >gi|256619544|ref|ZP_05476390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis ATCC 4200] gi|307276004|ref|ZP_07557137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX2134] gi|256599071|gb|EEU18247.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis ATCC 4200] gi|295113315|emb|CBL31952.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus sp. 7L76] gi|306507334|gb|EFM76471.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX2134] Length = 374 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 135/389 (34%), Positives = 197/389 (50%), Gaps = 26/389 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKRRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V D I + +Y ++E+ + + V F + Y G TP P V CN+ +KF L QL Sbjct: 60 AKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R +D +DQ+YFL +Q QL FPLG M+ Sbjct: 120 GADYVATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGME 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS +CF+ + + + + A +G++V +G+I G+H Sbjct: 176 KSEVRAIAERAGLATAKKKDSTGVCFIGEKNFKEFLSNYLP--AKKGNMVTEDGEIKGQH 233 Query: 257 NGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 +G++ YTI G G G EP FV+ D ++ + VG E L + E++ Sbjct: 234 DGLMYYTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVH 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVF 367 + D + F C K R Q +PV V ++DG V F++ V GQA VF Sbjct: 294 FTVDT----PMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVF 349 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396 Y LGGG+I + + + + + Sbjct: 350 YDG----MECLGGGLIDRAYQDEKELQYV 374 >gi|81245791|gb|ABB66499.1| conserved hypothetical protein [Shigella boydii Sb227] Length = 383 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 125/394 (31%), Positives = 204/394 (51%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 61 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L LGAD +ATGHY+R D + + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + + R Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294 A G I+ ++G +G H G++ +T+GQR+GLG+ EP +VV D ++ ++V Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQ 290 Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350 L + ++++W+ + +C VK R Q +P V+ +DD + V Sbjct: 291 GHEHPRLMSVGLIAQQLHWVD----REPFTGTMRCSVKTRYRQTDIPCTVKALDDDRIEV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY + LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 376 >gi|271500468|ref|YP_003333493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dickeya dadantii Ech586] gi|270344023|gb|ACZ76788.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dickeya dadantii Ech586] Length = 370 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 125/383 (32%), Positives = 201/383 (52%), Gaps = 29/383 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + ++ C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDDTE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + ++ + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGITLHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + D + + R +D +DQSYFL+ + QQL FP+G++ Sbjct: 120 LGADYIATGHYVRRQ-----DIDGKSRLLRGLDGNKDQSYFLYTLSHQQLAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254 +K VR +A ++ L A K DS ICF+ + K+ D + R A G I+ + +G+++G Sbjct: 175 EKPEVRKIAEQLDLATARKKDSTGICFIGERKFRDFLARYLP--AQPGPILSVDDGKVMG 232 Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 H G++ +T+GQR+GLG+ +P +VV D S+ + V L + + Sbjct: 233 EHQGLMYHTLGQRKGLGIGGVKEGGDDPWYVVDKDVASNVLYVAQGHEHPRLMSVGLIAQ 292 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQAC 365 +++W+ + + +C VK R Q +P + D D + V FE+ V GQ+ Sbjct: 293 QLHWVD----REPLSAPLRCTVKTRYRQADIPCLLTPLDADRIDVRFEEPVAAVTPGQSA 348 Query: 366 VFYTSDSNEARVLGGGIISGSKR 388 VFY + LGGGII R Sbjct: 349 VFYQGEV----CLGGGIIEERLR 367 >gi|307287836|ref|ZP_07567872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0109] gi|306501170|gb|EFM70476.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0109] gi|315164727|gb|EFU08744.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX1302] Length = 374 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 135/389 (34%), Positives = 197/389 (50%), Gaps = 26/389 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V D I + +Y ++E+ + + V F + Y G TP P V CN+ +KF L QL Sbjct: 60 AKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R +D +DQ+YFL +Q QL FPLG M+ Sbjct: 120 GADYVATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGME 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS +CF+ + + + + A +G++V +G+I G+H Sbjct: 176 KSEVRAIAERAGLATAKKKDSTGVCFIGEKNFKEFLSNYLP--AKKGNMVTEDGEIKGQH 233 Query: 257 NGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 +G++ YTI G G G EP FV+ D ++ + VG E L + E++ Sbjct: 234 DGLMYYTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVH 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVF 367 + D + F C K R Q +PV V ++DG V F++ V GQA VF Sbjct: 294 FTVDT----PMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVF 349 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396 Y LGGG+I + + + + + Sbjct: 350 YDG----MECLGGGLIDLAYQDEKELQYV 374 >gi|296451277|ref|ZP_06893017.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile NAP08] gi|296880371|ref|ZP_06904334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile NAP07] gi|296259883|gb|EFH06738.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile NAP08] gi|296428612|gb|EFH14496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile NAP07] Length = 361 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 140/368 (38%), Positives = 221/368 (60%), Gaps = 12/368 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + +V++ MSGGVDSSV A LLK+ GYDVIGVT++L+ + +G CC+ V DARRV Sbjct: 4 NKKVMIGMSGGVDSSVAAYLLKQQGYDVIGVTMKLWQDDDDVEIEGGCCSLSAVEDARRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + I + YV ++ E F+ VI F Y G+TP PC+ CN+ +KF D RQ+G D Sbjct: 64 ANKIGIPFYVLNFREVFKEKVIDYFIDEYLEGKTPNPCIACNKHIKFDDFYKKARQIGCD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + D+ R ++ + + ++DQ+Y L+ TQ+QL P+GD +K+ Sbjct: 124 YVATGHYAKIE---KDESTGRYLLKKSVTDKKDQTYALYNLTQEQLEHTLLPIGDYEKDR 180 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A+EMG+ + +K DSQ+ICFV+ Y + VK+ + EG V G ILG+H GI Sbjct: 181 VREIAKEMGMAVHNKPDSQEICFVKDNDYANYVKKHSKKRIEEGFFVDTKGNILGKHKGI 240 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 + YTIGQR+GLG+ G+P+FV+ ++ ++ +++G E+L + +++N++ D Sbjct: 241 LYYTIGQRKGLGITFGKPMFVIDINPINNTIVLGDNENLFKKELIAKDVNFISI----DT 296 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + + KIR S P P + R D + + F++++ + GQ+ V Y D V+ Sbjct: 297 LEEPLRVQAKIRYSAKPSPATIHRVGKDTIKIVFDEAQRAITKGQSVVMYDEDI----VV 352 Query: 379 GGGIISGS 386 GGGII S Sbjct: 353 GGGIIEKS 360 >gi|91226036|ref|ZP_01260963.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio alginolyticus 12G01] gi|91189477|gb|EAS75754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio alginolyticus 12G01] Length = 374 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 122/380 (32%), Positives = 196/380 (51%), Gaps = 28/380 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 60 QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY+R + + M R +D +DQSYFL+ + +Q+ FP+GD+ Sbjct: 120 LDADYIAMGHYVRRSF---PENGEKPQMLRGLDGNKDQSYFLYTLSNEQIARSLFPVGDL 176 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E L A K DS ICF+ + K+ + + R A G+I G+++G+ Sbjct: 177 EKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQ 234 Query: 256 HNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 H G++ +T+GQR+GL + +P FV D + +I L+ + Sbjct: 235 HQGLMYHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLA 294 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQA 364 +++W+ + + D KC VK R Q+ +P + DD + V F++ ++ V GQ+ Sbjct: 295 SQLHWVD----REPIRDVMKCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQS 350 Query: 365 CVFYTSDSNEARVLGGGIIS 384 VFY D LGGGII Sbjct: 351 AVFYKGDV----CLGGGIIE 366 >gi|114047179|ref|YP_737729.1| tRNA-specific 2-thiouridylase MnmA [Shewanella sp. MR-7] gi|122944742|sp|Q0HW33|MNMA_SHESR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|113888621|gb|ABI42672.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella sp. MR-7] Length = 372 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 123/385 (31%), Positives = 203/385 (52%), Gaps = 27/385 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A +D+ Sbjct: 4 IEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNDE---YCAAAEDL 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 61 KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLDFA 120 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 L AD +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+ Sbjct: 121 DDILDADYIAMGHYVRRR----DNADGTTQMLRGVDNNKDQSYFLYTLSHEQVARSLFPV 176 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR++A++MGL DK DS ICF+ + K+ + + A G+I G++ Sbjct: 177 GELEKHEVREIAKKMGLITHDKKDSTGICFIGERKFTEFLGNYLP--AQPGNIETAEGEV 234 Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304 +G+H G++ +T+GQR+GLG+ +P +VV D + ++V G L + ++ Sbjct: 235 IGKHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPRLMSNGMF 294 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363 + +++W+ V+G + VK R Q +P + +D+ + V F++ V GQ Sbjct: 295 VNQLHWVD----RKGPVEGSQIVVKTRYRQQDIPCTLTYLDDNTLKVVFDEPVAAVTPGQ 350 Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388 + VFY D LGGGII R Sbjct: 351 SAVFYDGDV----CLGGGIIDQLIR 371 >gi|255655293|ref|ZP_05400702.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium difficile QCD-23m63] Length = 359 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 140/368 (38%), Positives = 221/368 (60%), Gaps = 12/368 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + +V++ MSGGVDSSV A LLK+ GYDVIGVT++L+ + +G CC+ V DARRV Sbjct: 2 NKKVMIGMSGGVDSSVAAYLLKQQGYDVIGVTMKLWQDDDDVEIEGGCCSLSAVEDARRV 61 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + I + YV ++ E F+ VI F Y G+TP PC+ CN+ +KF D RQ+G D Sbjct: 62 ANKIGIPFYVLNFREVFKEKVIDYFIDEYLEGKTPNPCIACNKHIKFDDFYKKARQIGCD 121 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + D+ R ++ + + ++DQ+Y L+ TQ+QL P+GD +K+ Sbjct: 122 YVATGHYAKIE---KDESTGRYLLKKSVTDKKDQTYALYNLTQEQLEHTLLPIGDYEKDR 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A+EMG+ + +K DSQ+ICFV+ Y + VK+ + EG V G ILG+H GI Sbjct: 179 VREIAKEMGMAVHNKPDSQEICFVKDNDYANYVKKHSKKRIEEGFFVDTKGNILGKHKGI 238 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 + YTIGQR+GLG+ G+P+FV+ ++ ++ +++G E+L + +++N++ D Sbjct: 239 LYYTIGQRKGLGITFGKPMFVIDINPINNTIVLGDNENLFKKELIAKDVNFISI----DT 294 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + + KIR S P P + R D + + F++++ + GQ+ V Y D V+ Sbjct: 295 LEEPLRVQAKIRYSAKPSPATIHRVGKDTIKIVFDEAQRAITKGQSVVMYDEDI----VV 350 Query: 379 GGGIISGS 386 GGGII S Sbjct: 351 GGGIIEKS 358 >gi|238783798|ref|ZP_04627817.1| tRNA-specific 2-thiouridylase mnmA [Yersinia bercovieri ATCC 43970] gi|238715349|gb|EEQ07342.1| tRNA-specific 2-thiouridylase mnmA [Yersinia bercovieri ATCC 43970] Length = 373 Score = 495 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 125/382 (32%), Positives = 199/382 (52%), Gaps = 28/382 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGMELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + D + + R +D +DQSYFL+ + +QL FP+G++ Sbjct: 120 LGADYIATGHYVRRQ-----DVNGKSRLLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++ L A K DS ICF+ + K+ D + R A G I+ ++GQ +G Sbjct: 175 EKPEVRRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHVGE 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ +P +VV D ++ ++V L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKDGGDDPWYVVDKDVANNILLVAQGHEHPRLMSVGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366 ++W+ + F+C VK R Q +P V +DD V V F+ V GQ+ V Sbjct: 293 LHWVD----RQPITAAFRCVVKTRYRQQDIPCTVTPLDDDRVEVRFDNPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIISGSKR 388 FY ++ LGGGII Sbjct: 349 FYQAEV----CLGGGIIEARYP 366 >gi|194398405|ref|YP_002036838.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae G54] gi|229487424|sp|B5E605|MNMA_STRP4 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|194358072|gb|ACF56520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae G54] Length = 373 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 135/388 (34%), Positives = 194/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V + Y AG TP P V CN+ +KF L L Sbjct: 60 VAVADQIGIPYYSVNFEKEYWDRVFEYXXAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ +G H Sbjct: 176 KPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG +SL + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373 >gi|238791830|ref|ZP_04635467.1| tRNA-specific 2-thiouridylase mnmA [Yersinia intermedia ATCC 29909] gi|238728934|gb|EEQ20451.1| tRNA-specific 2-thiouridylase mnmA [Yersinia intermedia ATCC 29909] Length = 373 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 127/387 (32%), Positives = 200/387 (51%), Gaps = 29/387 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + D + + R +D +DQSYFL+ + +QL FP+G++ Sbjct: 120 LGADYIATGHYVRRQ-----DVDGKSRLLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++ L A K DS ICF+ + K+ D + R A G I+ ++GQ +G Sbjct: 175 EKPEVRRIAEQLELVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHMGE 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ +P +VV D ++ ++V L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKDGGDDPWYVVDKDVANNILLVAQGHEHPRLMSVGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366 ++W+ + F+C VK R Q +P V D+ V V F+ V GQ+ V Sbjct: 293 LHWVD----RQPITAAFRCVVKTRYRQQDIPCTVTPLDNERVEVRFDNPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIISGSKR-SDAV 392 FY + LGGGII +DAV Sbjct: 349 FYQGEV----CLGGGIIEERYPLTDAV 371 >gi|84391736|ref|ZP_00991638.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio splendidus 12B01] gi|84376449|gb|EAP93328.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio splendidus 12B01] Length = 378 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 119/387 (30%), Positives = 195/387 (50%), Gaps = 27/387 (6%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72 D+ + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A +D Sbjct: 3 DISSGNSEKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEE---YCTAAED 59 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 + DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 LADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEF 119 Query: 133 TRQ-LGADVLATGHYIRSRLYVGD--DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 + L AD +A GHY+R + D + M R +D +DQSYFL+ + Q+ Sbjct: 120 ADEVLDADYIAMGHYVRRTFPTQEELDAGVKPEMLRGLDGNKDQSYFLYTLSSDQVARSL 179 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 FP+G+++K VR +A E L A K DS ICF+ + K+ + + + A G+I Sbjct: 180 FPVGELEKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGNIETPE 237 Query: 250 GQILGRHNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLE 299 GQ++G+H G++ +T+GQR+GL + +P FV D + +I L+ Sbjct: 238 GQVIGQHQGLMYHTLGQRKGLHIGGTKGGGGNEDPWFVGEKDLKRNVLIAVQGKDHPLLK 297 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVG 358 + +++W+ + + C VK R Q +P + +DD + V F++ ++ Sbjct: 298 SEGLIASQLHWVN----RTPITEVMTCTVKTRYRQTDIPCTIIPIDDDNIKVIFDEPQIA 353 Query: 359 VASGQACVFYTSDSNEARVLGGGIISG 385 V GQ+ VFY + LGGGII Sbjct: 354 VTPGQSAVFYQDEV----CLGGGIIEK 376 >gi|229098868|ref|ZP_04229804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Rock3-29] gi|229105030|ref|ZP_04235684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Rock3-28] gi|229117893|ref|ZP_04247255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Rock1-3] gi|228665550|gb|EEL21030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Rock1-3] gi|228678407|gb|EEL32630.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Rock3-28] gi|228684541|gb|EEL38483.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus Rock3-29] Length = 376 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 137/388 (35%), Positives = 200/388 (51%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 6 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A E GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 178 ELKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + + Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKDNILYVDQGFHNELLYGDEVIATNVG 295 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + E FKC K R Q V VQ +++ V + ++ + GQA VFY Sbjct: 296 WVSNKAKET----EFKCTAKFRYRQADNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 351 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I S + L Sbjct: 352 DGD----ECLGGATIDEVYHSGKKLDYL 375 >gi|158319927|ref|YP_001512434.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alkaliphilus oremlandii OhILAs] gi|205811148|sp|A8MEV9|MNMA_ALKOO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|158140126|gb|ABW18438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alkaliphilus oremlandii OhILAs] Length = 364 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 132/378 (34%), Positives = 196/378 (51%), Gaps = 25/378 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K PKD +VV+ MSGGVDSSV A LLK+ GYDV+G+ ++ ++ S G C + +D Sbjct: 1 MSKAPKDTKVVIGMSGGVDSSVAALLLKQQGYDVVGIFMKNWDE---SDELGYCTSAEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RRVCD I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L Sbjct: 58 EDVRRVCDQIGIPYYSVNFEKEYWDRVFTYFLNEYKAGRTPNPDVMCNKEIKFKAFLDHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +LGAD LATGHY + G+ + R +D +DQ+YFL Q QL FP+G Sbjct: 118 IKLGADYLATGHYAQVDYSDGE-----YRLLRGVDTNKDQTYFLNQLNQYQLSKAMFPVG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K+ +R +A + GL A K DS ICF+ + + + + A G I+ L+G++ Sbjct: 173 HLQKKDLRQIALDAGLATASKKDSTGICFIGERNFKEFLSNYLP--AKPGKIISLDGEVK 230 Query: 254 GRHNGIINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 G+H+G++ YT+GQR+ G GEP FVV D + + V SL + + Sbjct: 231 GKHDGLMYYTLGQRKGLGIGGAGTGEPWFVVDKDLEKNILYVTQGETHPSLYSRGLIGAD 290 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366 + W+ E+ KC K R Q V V + + V F++ + + GQA V Sbjct: 291 LQWVS----ENPKPSVIKCTAKFRYRQPDQGVTVYVEEGNTCRVMFDEPQKAITPGQAVV 346 Query: 367 FYTSDSNEARVLGGGIIS 384 FY LGG I Sbjct: 347 FYDG----VVCLGGATID 360 >gi|24374174|ref|NP_718217.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella oneidensis MR-1] gi|30173411|sp|Q8CX40|MNMA_SHEON RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|24348681|gb|AAN55661.1|AE015704_12 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella oneidensis MR-1] Length = 372 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 121/385 (31%), Positives = 202/385 (52%), Gaps = 27/385 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A +D+ Sbjct: 4 IEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNDE---YCAAAEDL 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 61 KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 120 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 L AD +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+ Sbjct: 121 DDILDADYIAMGHYVRRR----DNEDGTTQMLRGVDNNKDQSYFLYTLSHEQVARSLFPV 176 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR++A++MGL DK DS ICF+ + K+ + + A G+I +G++ Sbjct: 177 GELEKHEVREIAKQMGLITHDKKDSTGICFIGERKFTEFLGNYLP--AQPGNIETADGEV 234 Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304 +G H G++ +T+GQR+GLG+ +P +VV D + ++V G L + + Sbjct: 235 IGTHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPRLMSNGML 294 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363 + +++W+ ++G + VK R Q +P + +D+ + V F++ V GQ Sbjct: 295 VNQLHWVD----RKGPINGSQIVVKTRYRQQDIPCTLTYLDDNTLKVVFDEPVAAVTPGQ 350 Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388 + VFY + LGGGII R Sbjct: 351 SAVFYDGEV----CLGGGIIDQLIR 371 >gi|312864108|ref|ZP_07724343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus vestibularis F0396] gi|322515817|ref|ZP_08068761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus vestibularis ATCC 49124] gi|311100340|gb|EFQ58548.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus vestibularis F0396] gi|322125703|gb|EFX97025.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus vestibularis ATCC 49124] Length = 373 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 137/388 (35%), Positives = 198/388 (51%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 3 DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQ----VVRDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKTMFPLGHLQ 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A +GL A K DS ICF+ + + + + + A +G ++ ++G+ +G H Sbjct: 176 KPEVREIAERVGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308 NG++ YTIGQR G+G+ P FVV D + + + VG ESL + I Sbjct: 234 NGLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDASMI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E +C K R Q V V+ D V F + + + GQA VFY Sbjct: 294 HFTRDMPEE----FEMECTAKFRYRQPDSKVTVKVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGGII + + V + + Sbjct: 350 DG----QECLGGGIIDQAYKDGKVCQYI 373 >gi|85059063|ref|YP_454765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sodalis glossinidius str. 'morsitans'] gi|123519587|sp|Q2NU15|MNMA_SODGM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|84779583|dbj|BAE74360.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Sodalis glossinidius str. 'morsitans'] Length = 369 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 129/376 (34%), Positives = 198/376 (52%), Gaps = 28/376 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DAR V Sbjct: 6 QKKVIVGMSGGVDSSVSAWLLQQQGYRVEGLFMKNWEEDDNEE---YCTAASDLADARAV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGA 138 CDT+ ++ + ++ + + V F + Y G TP P + CN+ +KF L LGA Sbjct: 63 CDTLGIALHTVNFAAEYWDNVFAHFLAEYQVGRTPNPDILCNKEIKFKAFLEFADDDLGA 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY+R D + + R +D +DQSYFL+ QL FP+G++ K Sbjct: 123 DYIATGHYVRRA-----DVNGKSRLLRGLDDNKDQSYFLYTLGHAQLARCLFPIGELAKP 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A ++GL A K DS ICF+ + K+ D + R G IV ++GQ +GRH G Sbjct: 178 EVRRIAADLGLATAAKKDSTGICFIGERKFRDFLGRYLP--VQPGAIVSVDGQEVGRHQG 235 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINW 310 ++ +T+GQR+GLG+ +P +VV D + +R+IV L + +++W Sbjct: 236 LMYHTLGQRKGLGIGGTRDGSEDPWYVVDKDLDHNRLIVAQGHQHPRLMSTGLTAGQLHW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + + + + +C VKIR Q + V DG + V F++ V GQ+ VFY Sbjct: 296 V----EREPLTEALRCTVKIRYRQPDIACLVTPQADGRLQVTFDQPVTAVTPGQSAVFYL 351 Query: 370 SDSNEARVLGGGIISG 385 ++ R LGGGII Sbjct: 352 AE----RCLGGGIIEA 363 >gi|310643522|ref|YP_003948280.1| tRNA-specific 2-thiouridylase mnma [Paenibacillus polymyxa SC2] gi|309248472|gb|ADO58039.1| tRNA-specific 2-thiouridylase mnmA [Paenibacillus polymyxa SC2] Length = 373 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 141/383 (36%), Positives = 202/383 (52%), Gaps = 24/383 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MAKANHETRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGRCTAEEDA 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RRVC+ I++ +Y ++E+ + + V F Y AG TP P V CNR +KF + L+ Sbjct: 58 EDVRRVCEQIDIPYYTVNFEKEYFDKVFSYFLDEYKAGRTPNPDVMCNREIKFGEFLNKA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R V +DG R + R +D +DQ+YFL A +Q QL FP+G Sbjct: 118 LDLGADYVATGHYAR---VVEEDG--RFTLLRGVDSNKDQTYFLNALSQAQLSRTMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252 + K VR +A GL A K DS +CF+ + + + + A GD+V + G++ Sbjct: 173 HLPKPEVRRIAEAAGLYTAKKKDSTGVCFIGERNFKEFLSGYLP--AKGGDMVDIATGEV 230 Query: 253 LGRHNGIINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 GRH+G++ YT+GQR+ G GEP FV D + + V SL + Sbjct: 231 KGRHDGLMYYTLGQRQGLGIGGSGSGEPWFVADKDLEKNILYVVQGDRHHSLYSTSLIAT 290 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365 ++NW+ F+C K R Q V +Q DG V+V F+ + + GQA Sbjct: 291 DVNWIEGADAR--PSGEFRCTAKFRYRQPDQQVTLQWLPDGTVHVVFDIHQKAITPGQAV 348 Query: 366 VFYTSDSNEARVLGGGIISGSKR 388 VFY + R LGGG I ++ Sbjct: 349 VFYDGE----RCLGGGTIDKVEK 367 >gi|254506120|ref|ZP_05118264.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio parahaemolyticus 16] gi|219550938|gb|EED27919.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio parahaemolyticus 16] Length = 374 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 120/383 (31%), Positives = 194/383 (50%), Gaps = 27/383 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A +D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 60 QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119 Query: 136 LGADVLATGHYIRSRLYVGD--DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 L AD +A GHY+R + D + M R +D +DQSYFL+ + Q+ FP+G Sbjct: 120 LDADYIAMGHYVRRTFPTQEELDAGAKPEMLRGLDSNKDQSYFLYTLSSDQVARSLFPVG 179 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR +A E L A K DS ICF+ + K+ + + + A G+I G+++ Sbjct: 180 ELEKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGNIETPEGKVI 237 Query: 254 GRHNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 G+H G++ +T+GQR+GL + EP FV D + +I L+ + Sbjct: 238 GKHQGLMYHTLGQRKGLHIGGQKGGGGNEEPWFVGDKDLKRNVLIAVQGKDHPLLKSEGL 297 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASG 362 +++W+ + D KC VK R Q +P + DD + V F++ ++ V G Sbjct: 298 IASQLHWVD----RTPITDVLKCTVKTRYRQTDIPCTIIPIDDENIKVIFDEPQIAVTPG 353 Query: 363 QACVFYTSDSNEARVLGGGIISG 385 Q+ VFY + LGGGII Sbjct: 354 QSAVFYQGEV----CLGGGIIEK 372 >gi|227886510|ref|ZP_04004315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 83972] gi|300975599|ref|ZP_07173078.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 45-1] gi|301051077|ref|ZP_07197911.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 185-1] gi|227836714|gb|EEJ47180.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 83972] gi|300297249|gb|EFJ53634.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 185-1] gi|300410262|gb|EFJ93800.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 45-1] gi|315293099|gb|EFU52451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 153-1] Length = 383 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 126/394 (31%), Positives = 202/394 (51%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 61 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L LGAD +ATGHY+R D + + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + R Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRKFLGRYLP-- 230 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294 A G I+ ++G +G H G++ +T+GQR+GLG+ EP +VV D ++ +IV Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQ 290 Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYV 350 L + ++++W+ + +C VK R Q +P V+ D D + V Sbjct: 291 GHEHPRLMSVGLIAQQLHWVD----REPFTGTMRCTVKTRYRQTDIPCTVKALDADRIEV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY + LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 376 >gi|225853749|ref|YP_002735261.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pneumoniae JJA] gi|254811466|sp|C1CBU0|MNMA_STRZJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|225723263|gb|ACO19116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pneumoniae JJA] Length = 373 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 136/388 (35%), Positives = 194/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 VAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAITL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAR----VVRDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ +G H Sbjct: 176 KPEVRKLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYLP--AQPGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV + + + VG +SL + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKALSKNILYVGQGFYHDSLMSTSLEASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E +C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTCDMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R V + + Sbjct: 350 DGE----ECLGGGLIDNAYRDGQVCQYI 373 >gi|163942146|ref|YP_001647030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus weihenstephanensis KBAB4] gi|205812536|sp|A9VIM2|MNMA_BACWK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|163864343|gb|ABY45402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus weihenstephanensis KBAB4] Length = 371 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 137/388 (35%), Positives = 201/388 (51%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P++ RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ A+ G C A +D Sbjct: 1 MNKLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDAN---GVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 58 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 118 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A E GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 173 ELKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + + Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + E F C K R Q V VQ +++ V + ++ + GQA VFY Sbjct: 291 WVSNKAKE----KEFTCTAKFRYRQADNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I S + L Sbjct: 347 DGD----ECLGGATIDEVYHSGKKLDYL 370 >gi|91978423|ref|YP_571082.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris BisB5] gi|91684879|gb|ABE41181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodopseudomonas palustris BisB5] Length = 402 Score = 495 bits (1275), Expect = e-138, Method: Composition-based stats. Identities = 221/405 (54%), Positives = 283/405 (69%), Gaps = 12/405 (2%) Query: 5 EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64 + LNSLDL+ P+D RVVVAMSGGVDSS AALLK GYDV+G+TLQLY+ A+ RK Sbjct: 2 TESMLNSLDLEGRPQDTRVVVAMSGGVDSSATAALLKSQGYDVVGITLQLYDHGAATHRK 61 Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 G+CCAGQD++DAR V + I + HYV DYE RFR +VI FA SYA GETP+PC++CNR+V Sbjct: 62 GACCAGQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYALGETPVPCIECNRSV 121 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 KF DLL+ R+LGA LATGHY+ SR DDG R + D +RDQSYFLFATT++Q Sbjct: 122 KFRDLLATARELGASALATGHYVSSRRL--DDGS--RALICAADRDRDQSYFLFATTREQ 177 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 L LRFPLGDM K R+LAR+ GL +ADK DSQDICFV G+Y DVV+R+ G+ Sbjct: 178 LDFLRFPLGDMTKPQTRELARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGE 237 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 IV LNG +LG H GI+++T+GQRRGLG+A PL+V+ LD RV+VGPRE+L + RI Sbjct: 238 IVDLNGHVLGSHPGIVHFTVGQRRGLGIASRAPLYVLRLDAAHRRVVVGPREALRMERIV 297 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 LR++NW+GDG + AV DG + FV++RS++ P P +++ G V+ E GV+ GQA Sbjct: 298 LRDVNWIGDGAIDQAVGDGLELFVRVRSTRAPQPAWLRAVGGGYEVELVAGEEGVSPGQA 357 Query: 365 CVFYTSDSNEARVLGGGIISGSK--------RSDAVEESLLSVIG 401 CVFY + +ARVLGGG I + R DA +L ++ G Sbjct: 358 CVFYDAADGQARVLGGGFIKSAAPRWSADGVRDDAASPALAAMRG 402 >gi|229549592|ref|ZP_04438317.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis ATCC 29200] gi|255972288|ref|ZP_05422874.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis T1] gi|256956522|ref|ZP_05560693.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis DS5] gi|256963413|ref|ZP_05567584.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis HIP11704] gi|300860987|ref|ZP_07107074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TUSoD Ef11] gi|307272736|ref|ZP_07553983.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0855] gi|312951194|ref|ZP_07770097.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0102] gi|229305257|gb|EEN71253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis ATCC 29200] gi|255963306|gb|EET95782.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis T1] gi|256947018|gb|EEU63650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis DS5] gi|256953909|gb|EEU70541.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis HIP11704] gi|300850026|gb|EFK77776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TUSoD Ef11] gi|306510350|gb|EFM79373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0855] gi|310630859|gb|EFQ14142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0102] gi|315034636|gb|EFT46568.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0027] gi|315143340|gb|EFT87356.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX2141] gi|315152679|gb|EFT96695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0031] gi|315159473|gb|EFU03490.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0312] gi|315161320|gb|EFU05337.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX0645] gi|323481203|gb|ADX80642.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis 62] Length = 374 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 135/389 (34%), Positives = 197/389 (50%), Gaps = 26/389 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V D I + +Y ++E+ + + V F + Y G TP P V CN+ +KF L QL Sbjct: 60 AKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R +D +DQ+YFL +Q QL FPLG M+ Sbjct: 120 GADYVATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGME 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS +CF+ + + + + A +G++V +G+I G+H Sbjct: 176 KSEVRAIADRAGLATAKKKDSTGVCFIGEKNFKEFLSNYLP--AKKGNMVTEDGEIKGQH 233 Query: 257 NGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 +G++ YTI G G G EP FV+ D ++ + VG E L + E++ Sbjct: 234 DGLMYYTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVH 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVF 367 + D + F C K R Q +PV V ++DG V F++ V GQA VF Sbjct: 294 FTVDT----PMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVF 349 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396 Y LGGG+I + + + + + Sbjct: 350 YDG----MECLGGGLIDRAYQDEKELQYV 374 >gi|205822121|sp|Q6NA79|MNMA_RHOPA RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 397 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 214/378 (56%), Positives = 278/378 (73%), Gaps = 4/378 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL+ P+D RVVVAMSGGVDSS AALLK GYDV+G+TLQLY+ +A RKG+CC Sbjct: 2 LNSLDLEGRPQDTRVVVAMSGGVDSSATAALLKAQGYDVVGITLQLYDHGEAIHRKGACC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V + I + HYV DYE RFR +VI FA SYA+GETP+PC++CNR+VKF D Sbjct: 62 AGQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYASGETPVPCIECNRSVKFRD 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R+LGA LATGHY+ SR DDG R + D +RDQSYFLFATT++QL L Sbjct: 122 LLATARELGASALATGHYVSSRRL--DDGS--RALVCAADRDRDQSYFLFATTREQLQFL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K R+LAR+ GL +ADK DSQDICFV G+Y DVV+R+ GDIV + Sbjct: 178 RFPLGDMTKPQTRELARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGDIVDV 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG+H GI+++T+GQRRGLG+A PL+V+ LD +V+VGPRE+L + RI LR+I Sbjct: 238 DGRVLGQHPGIVHFTVGQRRGLGIASRSPLYVLRLDAAQRQVVVGPREALLMDRIVLRDI 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GDG +D + DG + FV++RS++ P P +++ + G V+ E GV+ GQACVFY Sbjct: 298 NWIGDGSLDDVIGDGLELFVRVRSTRAPQPAWLRAANGGYEVELVVGEEGVSPGQACVFY 357 Query: 369 TSDSNEARVLGGGIISGS 386 + +ARVLGGG I + Sbjct: 358 DAAEGQARVLGGGFIKSA 375 >gi|251783539|ref|YP_002997844.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242392171|dbj|BAH82630.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 379 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 133/388 (34%), Positives = 194/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + + RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 9 DNSNTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 65 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 66 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 125 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 126 GADYVATGHYAQVKR----DEDGTVHMLRGADNGKDQTYFLSQLSQKQLQKTLFPLGHLQ 181 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H Sbjct: 182 KPEVRQIAERAGLATAKKKDSTGICFIGEKNFKTFLSQYLP--AQKGRMMTVDGRDMGEH 239 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ +P FVV D + + + VG ESL + + Sbjct: 240 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASVV 299 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V D V F + + + GQA VFY Sbjct: 300 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVVFAEPQRAITPGQAVVFY 355 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R + + Sbjct: 356 DGE----ECLGGGMIDMAYRDGQPCQYI 379 >gi|325695737|gb|EGD37636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sanguinis SK150] Length = 373 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 133/388 (34%), Positives = 198/388 (51%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D + M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQVKR----DQEGVVHMLRGKDNNKDQTYFLSQLSQEQLQKTMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + + + A G ++ L G+ +G+H Sbjct: 176 KPEVRAIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQPGRMMTLEGRDMGQH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ EP FVV D + + + VG ++L + ++ Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNEPWFVVGKDLSQNILYVGQGFYHDNLMSTSLDASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V D V+ ++ + V GQA VFY Sbjct: 294 HFTKEMPEE----FTMECTAKFRYRQPDSKVTVAVKGDKAVVNVDQPQRAVTPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGGG+I + ++ V + + Sbjct: 350 DGD----ECLGGGLIDRAYKNGQVLQYI 373 >gi|323128291|gb|ADX25588.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 373 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 133/388 (34%), Positives = 194/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + + RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 3 DNSNTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQVKR----DEDGTVHMLRGADNGKDQTYFLSQLSQKQLQKTLFPLGHLQ 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H Sbjct: 176 KPEVRQIAERAGLATAKKKDSTGICFIGEKNFKTFLSQYLP--AQKGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ +P FVV D + + + VG ESL + + Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASVV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGDKAEVVFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGG+I + R + + Sbjct: 350 DGE----ECLGGGMIDMAYRDGQPCQYI 373 >gi|119775197|ref|YP_927937.1| tRNA-specific 2-thiouridylase MnmA [Shewanella amazonensis SB2B] gi|205816912|sp|A1S7B1|MNMA_SHEAM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|119767697|gb|ABM00268.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella amazonensis SB2B] Length = 377 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 125/379 (32%), Positives = 192/379 (50%), Gaps = 28/379 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA Sbjct: 13 ANSSKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDTDE---YCAAAEDLKDA 69 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 70 QAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADDI 129 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY+R R D + M R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 130 LDADYIAMGHYVRRR-----DTDGKTEMLRGIDGNKDQSYFLYTLSHEQVARSLFPVGEL 184 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL DK DS ICF+ + K+ D + A G+I G I+GR Sbjct: 185 EKPEVRRIAEEQGLITHDKKDSTGICFIGERKFKDFLATYLP--AQPGNIETPEGDIIGR 242 Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ +P +VV D + ++V L + + + Sbjct: 243 HEGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDMARNVLVVAQGHEHPRLMSKGMRVNQ 302 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366 ++W+ DG VK R Q +P V+ D+ + V F++ V GQ+ V Sbjct: 303 LHWVD----RTGPADGATISVKTRYRQQDIPCTVKIIDEQTIEVLFDEPVAAVTPGQSAV 358 Query: 367 FYTSDSNEARVLGGGIISG 385 FY + LGGGII Sbjct: 359 FYDGEV----CLGGGIIDT 373 >gi|322374000|ref|ZP_08048534.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sp. C150] gi|321276966|gb|EFX54037.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus sp. C150] Length = 373 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 138/388 (35%), Positives = 197/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQ----VVRDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKTMFPLGHLQ 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + + + A +G ++ ++G+ +G H Sbjct: 176 KPEVREIAEHAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308 NG++ YTIGQR G+G+ P FVV D + + + VG ESL + I Sbjct: 234 NGLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDASMI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D L E +C K R Q V V+ D V F + + + GQA VFY Sbjct: 294 HFTRDMLEE----FDMECTAKFRYRQPDSKVTVKVKGDKAEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGGII + + V + + Sbjct: 350 DG----QECLGGGIIDQAYKDGKVCQYI 373 >gi|229013614|ref|ZP_04170745.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus mycoides DSM 2048] gi|229062091|ref|ZP_04199416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH603] gi|229169139|ref|ZP_04296854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH621] gi|228614367|gb|EEK71477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH621] gi|228717243|gb|EEL68918.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH603] gi|228747673|gb|EEL97545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus mycoides DSM 2048] Length = 376 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 137/388 (35%), Positives = 201/388 (51%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P++ RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ A+ G C A +D Sbjct: 6 MNKLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDAN---GVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A E GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 178 ELKKPQIREMATEAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + + Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 295 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + E F C K R Q V VQ +++ V + ++ + GQA VFY Sbjct: 296 WVSNKAKE----KEFTCTAKFRYRQADNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 351 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I S + L Sbjct: 352 DGD----ECLGGATIDEVYHSGKKLDYL 375 >gi|153835174|ref|ZP_01987841.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio harveyi HY01] gi|148868331|gb|EDL67456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio harveyi HY01] Length = 374 Score = 495 bits (1274), Expect = e-138, Method: Composition-based stats. Identities = 122/380 (32%), Positives = 196/380 (51%), Gaps = 28/380 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 60 QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY+R + + M R +D +DQSYFL+ + +Q+ FP+GD+ Sbjct: 120 LDADYIAMGHYVRRSF---PENGEKPQMLRGLDSNKDQSYFLYTLSNEQIARSLFPVGDL 176 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E L A K DS ICF+ + K+ + + R A G+I G+++G+ Sbjct: 177 EKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQ 234 Query: 256 HNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 H G++ +T+GQR+GL + +P FV D + +I L+ + Sbjct: 235 HQGLMYHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLA 294 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQA 364 +++W+ + + D KC VK R Q+ +P + DD + V F++ ++ V GQ+ Sbjct: 295 SQLHWVD----REPIRDVMKCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQS 350 Query: 365 CVFYTSDSNEARVLGGGIIS 384 VFY D LGGGII Sbjct: 351 AVFYKDDV----CLGGGIIE 366 >gi|296102847|ref|YP_003612993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057306|gb|ADF62044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 370 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 124/378 (32%), Positives = 198/378 (52%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEE---YCTAAADLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 120 LGADYIATGHYVRRA-----DVNGKSQLLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E+ L A K DS ICF+ + K+ D + R A G IV ++G +G+ Sbjct: 175 EKPEVRKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIVTVDGDEIGQ 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ +P +VV D ++ +IV L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNILIVAQGHDHPRLMSVGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366 ++W+ + + +C VK R Q +P + +DD + V F++ V GQ+ V Sbjct: 293 LHWVD----REPLKGTLRCTVKTRYRQTDIPCTITALDDDRIDVRFDEPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY+ D LGGGII Sbjct: 349 FYSGDI----CLGGGIIE 362 >gi|238762225|ref|ZP_04623197.1| tRNA-specific 2-thiouridylase mnmA [Yersinia kristensenii ATCC 33638] gi|238699572|gb|EEP92317.1| tRNA-specific 2-thiouridylase mnmA [Yersinia kristensenii ATCC 33638] Length = 373 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 126/378 (33%), Positives = 199/378 (52%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + D + + + R +D +DQSYFL+ + +QL FP+G++ Sbjct: 120 LGADYIATGHYVRRQ-----DVEGKSRLLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++ L A K DS ICF+ + K+ D + R A G I+ ++GQ +G Sbjct: 175 EKPEVRRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHVGE 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ +P +VV D ++ ++V L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGGDDPWYVVDKDVANNILLVAQGHEHPRLMSVGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366 ++W+ + V F+C VK R Q +P V DD V V F++ V GQ+ V Sbjct: 293 LHWVD----REPVTAAFRCVVKTRYRQQDIPCTVTPLDDERVEVRFDELVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 349 FYQGEV----CLGGGIIE 362 >gi|301381398|ref|ZP_07229816.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. tomato Max13] gi|302058396|ref|ZP_07249937.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. tomato K40] gi|302130355|ref|ZP_07256345.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 366 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 126/382 (32%), Positives = 198/382 (51%), Gaps = 26/382 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VC Sbjct: 2 KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + + ++ + + V F Y AG TP P + CNR +KF L LGAD+ Sbjct: 59 DRIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K V Sbjct: 119 IATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPQV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A K DS ICF+ + ++ D +++ A GDI G+++GRH+G++ Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGDIKTTEGEVIGRHSGLM 231 Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +TIGQR+GLG+ +P +V+ D +++ +IVG L + EI W+ Sbjct: 232 YHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVN 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 K K+R Q P +++ G F+ + V GQ+ VFY + Sbjct: 292 PIDLSSP----RKLTAKVRYRQSDQPCMLEKTAGGYRATFDDPQRAVTPGQSVVFYDGEI 347 Query: 373 NEARVLGGGIISGSKRSDAVEE 394 LGGG+I ++ + ++ Sbjct: 348 ----CLGGGVIEIAEPWTSKDK 365 >gi|257416449|ref|ZP_05593443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis AR01/DG] gi|257158277|gb|EEU88237.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis ARO1/DG] Length = 374 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 135/389 (34%), Positives = 196/389 (50%), Gaps = 26/389 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V D I + +Y ++E+ + + V F + Y G TP P V CN+ +KF L QL Sbjct: 60 AKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R +D +DQ+YFL +Q QL FPLG M Sbjct: 120 GADYVATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMG 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS +CF+ + + + + A +G++V +G+I G+H Sbjct: 176 KSEVRAIAERAGLATAKKKDSTGVCFIGEKNFKEFLSNYLP--AKKGNMVTEDGEIKGQH 233 Query: 257 NGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 +G++ YTI G G G EP FV+ D ++ + VG E L + E++ Sbjct: 234 DGLMYYTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVH 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVF 367 + D + F C K R Q +PV V ++DG V F++ V GQA VF Sbjct: 294 FTVDT----PMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVF 349 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396 Y LGGG+I + + + + + Sbjct: 350 YDG----MECLGGGLIDRAYQDEKELQYV 374 >gi|312881247|ref|ZP_07741045.1| tRNA-specific 2-thiouridylase MnmA [Vibrio caribbenthicus ATCC BAA-2122] gi|309371139|gb|EFP98593.1| tRNA-specific 2-thiouridylase MnmA [Vibrio caribbenthicus ATCC BAA-2122] Length = 369 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 126/383 (32%), Positives = 195/383 (50%), Gaps = 29/383 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + +N K +V+V MSGGVDSSV A LLK+ GY V G+ ++ + C A +D+ Sbjct: 1 MSENSK-KKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNED---YCTAAEDL 56 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 57 ADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLDFA 116 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 L AD +A GHY+R D ++ M R +D +DQSYFL+ + +Q+ FP+ Sbjct: 117 DDVLEADYIAMGHYVRRSCIESD---QKPQMLRGLDGNKDQSYFLYTLSHEQIGRSLFPV 173 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR +A E GL A K DS ICF+ + K+ D + + A G I G+ Sbjct: 174 GELEKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTDFLSKYLP--AQPGKIETPEGKE 231 Query: 253 LGRHNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIV---GPRESLEVHR 302 +G H G++ +T+GQR+GL + EP +V D + +I L+ Sbjct: 232 IGEHQGLMYHTLGQRKGLHIGGQKGGGGNEEPWYVADKDLKRNVLIAVQGADHPLLKSEG 291 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVAS 361 + +++W+ +V KC VK R Q+ +P + D+G + V F+ +V V Sbjct: 292 LIASQLHWVD----RSPLVSEIKCSVKTRYRQNDIPCTIVPIDNGSIKVIFDNPQVAVTP 347 Query: 362 GQACVFYTSDSNEARVLGGGIIS 384 GQ+ VFY D LGGGII Sbjct: 348 GQSAVFYQGDV----CLGGGIIE 366 >gi|113969944|ref|YP_733737.1| tRNA-specific 2-thiouridylase MnmA [Shewanella sp. MR-4] gi|123029751|sp|Q0HJT7|MNMA_SHESM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|113884628|gb|ABI38680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella sp. MR-4] Length = 372 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 121/385 (31%), Positives = 201/385 (52%), Gaps = 27/385 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A +D+ Sbjct: 4 IEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNDE---YCAAAEDL 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 61 KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLDFA 120 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 L AD +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+ Sbjct: 121 DDILDADYIAMGHYVRRR----DNADGTTQMLRGVDNNKDQSYFLYTLSHEQVARSLFPV 176 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR++A++MGL DK DS ICF+ + K+ + + A G+I G++ Sbjct: 177 GELEKHEVREIAKKMGLITHDKKDSTGICFIGERKFTEFLGNYLP--AQPGNIETAEGEV 234 Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304 +G+H G++ +T+GQR+GLG+ +P +VV D + ++V G L + + Sbjct: 235 IGKHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPRLMSNGML 294 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363 + +++W+ +G + VK R Q +P + +D+ + V F++ V GQ Sbjct: 295 VNQLHWVD----RKGPAEGSQIVVKTRYRQQDIPCTLTYLDDNTLKVVFDEPVAAVTPGQ 350 Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388 + VFY + LGGGII R Sbjct: 351 SAVFYDGEV----CLGGGIIDQLIR 371 >gi|86147101|ref|ZP_01065418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio sp. MED222] gi|218710012|ref|YP_002417633.1| tRNA-specific 2-thiouridylase MnmA [Vibrio splendidus LGP32] gi|85835166|gb|EAQ53307.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio sp. MED222] gi|218323031|emb|CAV19208.1| Probable tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Vibrio splendidus LGP32] Length = 378 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 120/387 (31%), Positives = 195/387 (50%), Gaps = 27/387 (6%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72 D+ + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A +D Sbjct: 3 DISSGNSEKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEE---YCTAAED 59 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 + DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 LADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEF 119 Query: 133 TRQ-LGADVLATGHYIRSRLYVGD--DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 + L AD +A GHY+R + D + M R +D +DQSYFL+ + Q+ Sbjct: 120 ADEVLDADYIAMGHYVRRTFPTQEELDAGAKPEMLRGLDGNKDQSYFLYTLSSDQVARSL 179 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 FP+G+++K VR +A E L A K DS ICF+ + K+ + + + A G+I Sbjct: 180 FPVGELEKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGNIETPE 237 Query: 250 GQILGRHNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRV--IVG-PRESLE 299 GQ++G+H G++ +T+GQR+GL + EP FV D + + + G L+ Sbjct: 238 GQVIGQHQGLMYHTLGQRKGLHIGGTKGGGGNEEPWFVGEKDLKRNVLIAVQGKDHPLLK 297 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVG 358 + +++W+ + + C VK R Q +P + DD + V F++ ++ Sbjct: 298 SEGLIASQLHWVN----RTPITEVMTCTVKTRYRQTDIPCTIIPIDDENIKVIFDEPQIA 353 Query: 359 VASGQACVFYTSDSNEARVLGGGIISG 385 V GQ+ VFY + LGGGII Sbjct: 354 VTPGQSAVFYLDNV----CLGGGIIEK 376 >gi|293409499|ref|ZP_06653075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli B354] gi|291469967|gb|EFF12451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli B354] Length = 395 Score = 494 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 125/394 (31%), Positives = 204/394 (51%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 ++ A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 13 VIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 72 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 73 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 129 Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L LGAD +ATGHY+R D + + R +D +DQSYFL+ Sbjct: 130 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYT 184 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + + R Sbjct: 185 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 242 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294 A G I+ ++G +G H G++ +T+GQR+GLG+ EP +VV D ++ +IV Sbjct: 243 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQ 302 Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYV 350 L + ++++W+ + +C VK R Q +P V+ +DD + V Sbjct: 303 GHEHPRLMSVGLIAQQLHWVD----REPFTSTMRCTVKTRYRQTDIPCTVKALDDDRIEV 358 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY + LGGGII Sbjct: 359 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 388 >gi|55821970|ref|YP_140412.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus thermophilus LMG 18311] gi|55823887|ref|YP_142328.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus thermophilus CNRZ1066] gi|81558821|sp|Q5LXJ9|MNMA_STRT1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|81560008|sp|Q5M249|MNMA_STRT2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|55737955|gb|AAV61597.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase [Streptococcus thermophilus LMG 18311] gi|55739872|gb|AAV63513.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase [Streptococcus thermophilus CNRZ1066] gi|312279316|gb|ADQ63973.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Streptococcus thermophilus ND03] Length = 373 Score = 494 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 137/388 (35%), Positives = 197/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I++ +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIDIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQ----VVRDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKTMFPLGHLQ 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + + + A +G ++ ++G+ +G H Sbjct: 176 KPEVREIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTIDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308 NG++ YTIGQR G+G+ P FVV D + + + VG ESL + I Sbjct: 234 NGLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDASMI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E +C K R Q V V+ D V F + + + GQA VFY Sbjct: 294 HFTRDMPEE----FEMECTAKFRYRQPDSKVTVKVKGDKSEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGGII + + V + + Sbjct: 350 DG----QECLGGGIIDQAYKDGKVCQYI 373 >gi|90408225|ref|ZP_01216392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Psychromonas sp. CNPT3] gi|90310671|gb|EAS38789.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Psychromonas sp. CNPT3] Length = 369 Score = 494 bits (1273), Expect = e-137, Method: Composition-based stats. Identities = 130/378 (34%), Positives = 208/378 (55%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + ++V+V MSGGVDSSV A LL++ GY V G+ ++ + +S+ C A QD+ DA Sbjct: 3 DNSQIKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDSSE---YCAAAQDLQDA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQ 135 + VCD +++ + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLDIKLHTVNFSAEYWDNVFEHFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R R G + R +D +DQSYFL+A ++Q+ FP+G++ Sbjct: 120 LGADFIATGHYVRRREVNG-----HVQLLRGLDTNKDQSYFLYAVGEKQIAQTLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + GL A+K DS ICF+ + K+ D ++ A GDIV G+++G+ Sbjct: 175 EKPEVRRIAEQQGLITANKKDSTGICFIGERKFTDFLQEYLP--AQPGDIVTPEGKVIGK 232 Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ +P +VV D ++R++V +L + + + Sbjct: 233 HQGLMYHTLGQRKGLGIGGRQDANEDPWYVVAKDMPNNRLLVAQGANNPALLSYGLIATK 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366 +W+ + ++A F C +K R Q VP V +DD + V FE + V GQ+ V Sbjct: 293 CDWVDRKILKEA----FTCTLKTRYRQQDVPCTVTPLDDDTLRVIFETPQSAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGG II Sbjct: 349 FYMQEV----CLGGAIIE 362 >gi|163790364|ref|ZP_02184796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Carnobacterium sp. AT7] gi|159874435|gb|EDP68507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Carnobacterium sp. AT7] Length = 374 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 129/390 (33%), Positives = 196/390 (50%), Gaps = 26/390 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 ++ RVVV MSGGVDSSV A +LK+ GYDV+G+ ++ ++ + G C A +D D Sbjct: 2 QDNSKTRVVVGMSGGVDSSVTALVLKQQGYDVVGIFMKNWDD---TDEFGMCTATEDYND 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 V + I + +Y ++E+++ + V F Y G TP P V CN+ +KF L + Sbjct: 59 VALVANQIGIPYYSINFEKQYWDKVFTYFLEEYKKGRTPNPDVMCNKEIKFKAFLDYAIE 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY + V D M R +D +DQ+YFL +Q+QL FPLG M Sbjct: 119 LGADYVATGHYAQ----VERDENGVTHMLRGVDNNKDQTYFLNQLSQEQLAKTLFPLGGM 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL A K DS +CF+ + + + A G+++ ++G+I G+ Sbjct: 175 QKPEVRRIAEEAGLATAKKKDSTGVCFIGERDFKKFLMTYLP--AQPGNMMTVDGEIKGQ 232 Query: 256 HNGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 H+G++ YTI G G G +P FVV D ++ + VG E L + ++ Sbjct: 233 HDGLMYYTIGQRQGLGIGGGGKSSDPWFVVGKDLETNTLYVGQGFNHEWLLATHLEASDL 292 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366 ++ + + FKC K R Q V V N+DG V+F++ + GQA V Sbjct: 293 HFTTN----EEKSRVFKCTAKFRYRQADTGVTVHLNEDGTAATVEFDEPVRAITPGQAVV 348 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396 FY LGGG I + + + Sbjct: 349 FYDG----MECLGGGTIDAAYNETKELQYV 374 >gi|323704672|ref|ZP_08116250.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacterium xylanolyticum LX-11] gi|323536134|gb|EGB25907.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacterium xylanolyticum LX-11] Length = 369 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 135/385 (35%), Positives = 204/385 (52%), Gaps = 24/385 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + ++++VVV MSGGVDSSV A LLK GYDVIG+ ++ ++ S G C A +D Sbjct: 1 MAYENQNVKVVVGMSGGVDSSVSALLLKEQGYDVIGIFMKNWDEEDDS---GYCTAAEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RVCD I + +Y ++ + + + V F + Y +G TP P V CN+ +KF L + Sbjct: 58 EDVVRVCDKIGIPYYSINFTKEYWDRVFQYFLNEYKSGRTPNPDVMCNKEIKFKAFLEFS 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 ++GAD +ATGHY R G M + +D +DQ+YFL Q+QL FP+G Sbjct: 118 MKIGADYIATGHYARIEHIDG-----HYKMLKGVDKNKDQTYFLCELGQKQLSKTMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 + K VR++AR+ GL ADK DS ICF+ + K+ + + + A G+I L+G++L Sbjct: 173 HLDKSEVREIARKAGLKTADKKDSTGICFIGERKFKEFLNQFLP--AKPGEIRDLSGRVL 230 Query: 254 GRHNGIINYTI---GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 GRH+G++ YT+ GV GEP FVV D ++ + V +L + ++ + Sbjct: 231 GRHDGLMFYTLGQRRGIGIGGVGTGEPWFVVDKDVENNILYVAQGDKNPALYSYGLFTKN 290 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 +NW+ D D +C K R Q V V + D+G V F+K + V GQ VF Sbjct: 291 VNWIDG----DMNFDELRCKAKFRYRQPDQDVMVFKKDNGYLVVFDKPQRAVTPGQFVVF 346 Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392 Y + LGGG+I + + Sbjct: 347 YDGE----YCLGGGVIETIYKDEKA 367 >gi|324005950|gb|EGB75169.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 57-2] Length = 383 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 126/394 (31%), Positives = 202/394 (51%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 61 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L LGAD +ATGHY+R D + + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + + R Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP-- 230 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294 A G I+ ++G +G H G++ +T+GQR+GLG+ EP +VV D ++ +IV Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQ 290 Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYV 350 L + +++W+ + +C VK R Q +P V+ D D + V Sbjct: 291 GHEHPRLMSVGLIALQLHWVD----REPFTGTMRCTVKTRYRQTDIPCTVKALDADRIEV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY + LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 376 >gi|163801953|ref|ZP_02195849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio sp. AND4] gi|159174094|gb|EDP58902.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio sp. AND4] Length = 374 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 121/380 (31%), Positives = 198/380 (52%), Gaps = 28/380 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 60 QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY+R + ++ M R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 120 LDADYIAMGHYVRRSF---PENGKKPQMLRGLDSNKDQSYFLYTLSNEQIARSLFPVGNL 176 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E L A K DS ICF+ + K+ + + R A G+I G+++G+ Sbjct: 177 EKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQ 234 Query: 256 HNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 H G++ +T+GQR+GL + +P FV D + +I L+ + Sbjct: 235 HQGLMYHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLKRNVLIAVQGKDHPLLKSEGLLA 294 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQA 364 +++W+ + + D KC VK R Q+ +P V +D+ + V F++ ++ V GQ+ Sbjct: 295 SQLHWVD----REPIRDVMKCTVKTRYRQEDIPCTIVPIDDENIKVIFDEPQIAVTPGQS 350 Query: 365 CVFYTSDSNEARVLGGGIIS 384 VFY D LGGGII Sbjct: 351 AVFYEGDV----CLGGGIIE 366 >gi|94991468|ref|YP_599568.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes MGAS10270] gi|94544976|gb|ABF35024.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pyogenes MGAS10270] Length = 379 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 133/388 (34%), Positives = 198/388 (51%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 9 DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 65 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 66 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 125 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 126 GADYVATGHYAQVKR----DENGTVYMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 181 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H Sbjct: 182 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEH 239 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ +P FVV D + + + VG E+L + + I Sbjct: 240 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVI 299 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E F+C K R Q V V +D V F + + + GQA VFY Sbjct: 300 HFTREMPEE----FTFECTAKFRYRQPDSQVTVHVREDKAEVVFAEPQRAITPGQAVVFY 355 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGG+I + ++ + + Sbjct: 356 DG----KECLGGGMIDMAYKNGQPCQYI 379 >gi|70726299|ref|YP_253213.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus haemolyticus JCSC1435] gi|123660380|sp|Q4L6W8|MNMA_STAHJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|68447023|dbj|BAE04607.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Staphylococcus haemolyticus JCSC1435] Length = 370 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 137/378 (36%), Positives = 204/378 (53%), Gaps = 22/378 (5%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + KD+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D D Sbjct: 2 SNKDIRVVVGMSGGVDSSVTAHVLKDQGYDVIGIFMKNWDD---TDENGVCTATEDYNDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 VC+ I + +Y ++E+ + + V F Y G TP P V CN+ +KF L +L Sbjct: 59 IAVCNQIGIPYYAVNFEQEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLEHALKL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R R + DDG M R +D +DQ+YFL +QQQL + FP+GD+ Sbjct: 119 GADYVATGHYARIRRH--DDG--HVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDID 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ VR +A E L A K DS ICF+ + + + + A G++ LNG +G H Sbjct: 175 KKEVRKIAEEQDLATAKKKDSTGICFIGERNFKTFLSQYLP--AQSGEMRTLNGDKMGMH 232 Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLG 312 +G++ YTIGQR GLG+ G+P FVV + + + V ++L + + +++ Sbjct: 233 SGLMYYTIGQRHGLGIGGDGDPWFVVGKNLEDNILYVEQGFHHDALYSDYLIASDFSFVN 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 + +GF+C K R Q VFVQR + + + V F++ + GQA VFY + Sbjct: 293 PVDLD----NGFECTAKFRYRQKDTKVFVQRESQNALRVTFDEPVRAITPGQAVVFYDEE 348 Query: 372 SNEARVLGGGIISGSKRS 389 LGG I ++ Sbjct: 349 V----CLGGATIDDVFKT 362 >gi|320547685|ref|ZP_08041970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus equinus ATCC 9812] gi|320447760|gb|EFW88518.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus equinus ATCC 9812] Length = 373 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 133/388 (34%), Positives = 192/388 (49%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D + + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQVGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R D +DQ+YFL +Q+QL + FPLG ++ Sbjct: 120 GADYVATGHYAQ----VSRDEDGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLE 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H Sbjct: 176 KPEVRKIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ P FVV D + + + VG ESL + + Sbjct: 234 AGLMYYTIGQRGGLGIGGQQGGDNAPWFVVGKDLSKNILYVGQGFYHESLMSTSLDASSV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E + K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTRDMPEE----FTMEVTAKFRYRQPDSKVTVHVKGDKAEVVFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGGII + + + + Sbjct: 350 DGE----ECLGGGIIDMAYKDGVACQYI 373 >gi|209560263|ref|YP_002286735.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes NZ131] gi|229487429|sp|B5XJA6|MNMA_STRPZ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|209541464|gb|ACI62040.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Streptococcus pyogenes NZ131] Length = 373 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 133/388 (34%), Positives = 198/388 (51%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 3 DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D + M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQVKR----DENGKVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H Sbjct: 176 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ +P FVV D + + + VG E+L + + I Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E F+C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTREMPEE----FTFECTAKFRYRQPDSHVTVHVRGDKAEVVFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGG+I + ++ + + Sbjct: 350 DG----KECLGGGMIDMAYKNGQPCQYI 373 >gi|205829105|sp|Q1JED4|MNMA_STRPD RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 373 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 133/388 (34%), Positives = 198/388 (51%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 3 DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQVKR----DENGTVYMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H Sbjct: 176 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ +P FVV D + + + VG E+L + + I Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E F+C K R Q V V +D V F + + + GQA VFY Sbjct: 294 HFTREMPEE----FTFECTAKFRYRQPDSQVTVHVREDKAEVVFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGG+I + ++ + + Sbjct: 350 DG----KECLGGGMIDMAYKNGQPCQYI 373 >gi|119944723|ref|YP_942403.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Psychromonas ingrahamii 37] gi|166235075|sp|A1STI9|MNMA_PSYIN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|119863327|gb|ABM02804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Psychromonas ingrahamii 37] Length = 367 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 125/378 (33%), Positives = 202/378 (53%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + ++V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A QD+ DA Sbjct: 3 DNSQVKVIVGMSGGVDSSVSAYLLQQQGYLVEGLFMKNWEEDDTDQ---YCAAAQDLEDA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQ 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 60 QSVCDKLGIPLHTINFAAEYWDNVFEHFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R R G + R +D +DQSYFL+A ++Q+ FP+G++ Sbjct: 120 LGADYIATGHYVRRREVDG-----HVQLLRGLDNNKDQSYFLYAIGEKQIAKSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + L +K DS ICF+ + K+ D ++ A GDIV G+++G+ Sbjct: 175 EKPEVRRIAEQQDLITHNKKDSTGICFIGERKFTDFLQEYLP--AQPGDIVTPTGEVIGQ 232 Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ P +VV D +++R++V +L + + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGLQNSNENPWYVVGKDMDNNRLLVAQGADHPALFSYGLIAKQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366 +W+ F+C VK R Q +P V +DD + V F+ ++ V GQ+ V Sbjct: 293 CDWVD----RTPKKSTFRCTVKTRYRQQDIPCTVTPLDDDTLKVIFDTAQAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGG II Sbjct: 349 FYNDEV----CLGGAIIE 362 >gi|229545347|ref|ZP_04434072.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX1322] gi|257084787|ref|ZP_05579148.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis Fly1] gi|229309554|gb|EEN75541.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX1322] gi|256992817|gb|EEU80119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis Fly1] Length = 374 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 135/389 (34%), Positives = 195/389 (50%), Gaps = 26/389 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V D I + +Y ++E+ + + V F + Y G TP P V CN+ +KF L QL Sbjct: 60 AKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R +D +DQ+YFL +Q QL FPLG M+ Sbjct: 120 GADYVATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGME 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS +CF+ + + + + A +G++V G+I G+H Sbjct: 176 KSEVRAIAERAGLATAKKKDSTGVCFIGEKNFKEFLSNYLP--AKKGNMVTEEGEIKGQH 233 Query: 257 NGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 +G++ YTI G G G EP FV+ D ++ + VG E L + E++ Sbjct: 234 DGLMYYTIGQRQGLGIGGGGKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVH 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVF 367 + D + F C K R Q +PV V ++DG V F++ V GQA VF Sbjct: 294 FTVDT----PMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVF 349 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396 Y LGGG+I + + + + Sbjct: 350 YDG----MECLGGGLIDRVYQDEKELQYV 374 >gi|90422506|ref|YP_530876.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris BisB18] gi|90104520|gb|ABD86557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodopseudomonas palustris BisB18] Length = 404 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 213/399 (53%), Positives = 280/399 (70%), Gaps = 4/399 (1%) Query: 5 EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64 A LNSLDL+ P+D R+VVAMSGGVDSS AALLK +GYDV+G+TLQLY+ A RK Sbjct: 2 TAAMLNSLDLEGRPQDTRIVVAMSGGVDSSTTAALLKSEGYDVVGITLQLYDHGAAIHRK 61 Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 G+CCAGQD++DAR V D I + HYV DYE RF+ +VI FA+SYA GETP+PC++CNR++ Sbjct: 62 GACCAGQDIHDARAVADRIGIPHYVLDYESRFQESVIDSFAASYATGETPVPCIECNRSI 121 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 KF DLLS R+LGA LATGHY+ SR R + D +RDQSYFLFATT+ Q Sbjct: 122 KFRDLLSTARELGASALATGHYVSSRRLAD----GSRALVCASDADRDQSYFLFATTRDQ 177 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 L LRFPLGDM K R+LAR+ GL +ADK DSQDICFV G+Y DVV R+ G+ Sbjct: 178 LDYLRFPLGDMTKPQTRELARKFGLSVADKHDSQDICFVPTGRYTDVVGRLKPNAMEPGE 237 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 IV L+G++LG+H GI+++T+GQRRGLG+A PL+V+ L+ ++ RV+VGPRE+L + RI Sbjct: 238 IVDLDGRVLGKHQGIVHFTVGQRRGLGIASTAPLYVLRLEPSTRRVVVGPREALRMDRIV 297 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 LR++NW+GD + AV DG + FV++RS++ P P +++ D G V+ E GV+ GQA Sbjct: 298 LRDVNWIGDSSLDRAVGDGLELFVRVRSTRRPQPAWLRAQDGGYQVELVAGEDGVSPGQA 357 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403 CVFY + + +ARVLGGG I + A + +L Sbjct: 358 CVFYDAPAGQARVLGGGFIKSATPRAAGKSALRGAPASR 396 >gi|116628661|ref|YP_821280.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus thermophilus LMD-9] gi|122266745|sp|Q03I88|MNMA_STRTD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|116101938|gb|ABJ67084.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus thermophilus LMD-9] Length = 373 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 137/388 (35%), Positives = 197/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I++ +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIDIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQ----VVRDEDGIVHMLRGADNNKDQTYFLSQLSQEQLQKAMFPLGHLQ 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + + + A +G ++ ++G+ +G H Sbjct: 176 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKEFLSQYLP--AQKGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308 NG++ YTIGQR G+G+ P FVV D + + + VG ESL + I Sbjct: 234 NGLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSKNILYVGQGFHHESLMSTSLDASTI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E +C K R Q V V+ D V F + + + GQA VFY Sbjct: 294 HFTRDMPEE----FEMECTAKFRYRQPDSKVTVKVKGDKSEVIFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGGII + + V + + Sbjct: 350 DG----QECLGGGIIDQAYKDGKVCQYI 373 >gi|238758422|ref|ZP_04619599.1| tRNA-specific 2-thiouridylase mnmA [Yersinia aldovae ATCC 35236] gi|238703326|gb|EEP95866.1| tRNA-specific 2-thiouridylase mnmA [Yersinia aldovae ATCC 35236] Length = 373 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 126/378 (33%), Positives = 196/378 (51%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGMELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + D + + R +D +DQSYFL+ + +QL FP+G++ Sbjct: 120 LGADYIATGHYVRRQ-----DVDGKSRLLRGLDGNKDQSYFLYTLSHEQLAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++ L A K DS ICF+ + K+ D + R A G I+ ++GQ +G Sbjct: 175 EKPEVRRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQHVGE 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ +P +VV D ++ ++V L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGGDDPWYVVDKDLANNILLVAQGHEHPRLMSVGLAAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366 ++W+ V F+C VK R Q +P V DD V V F+ V GQ+ V Sbjct: 293 LHWVD----RQPVTAPFRCVVKTRYRQQDIPCTVTPLDDERVDVRFDSPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 349 FYQGEV----CLGGGIIE 362 >gi|148980425|ref|ZP_01816047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrionales bacterium SWAT-3] gi|145961228|gb|EDK26541.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrionales bacterium SWAT-3] Length = 378 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 120/387 (31%), Positives = 196/387 (50%), Gaps = 27/387 (6%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72 D+ + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A +D Sbjct: 3 DISSGNSEKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEE---YCTAAED 59 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 + DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 60 LADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEF 119 Query: 133 TRQ-LGADVLATGHYIRSRLYVGD--DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 + L AD +A GHY+R + + + M R +D +DQSYFL+ + Q+ Sbjct: 120 ADEVLDADYIAMGHYVRRTFPTQEELEAGVKPEMLRGLDSNKDQSYFLYTLSSDQVARSL 179 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 FP+G+++K VR +A E L A K DS ICF+ + K+ + + + A GDI Sbjct: 180 FPVGELEKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGDIETPE 237 Query: 250 GQILGRHNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLE 299 G+++G+HNG++ +T+GQR+GL + +P FV D + +I L+ Sbjct: 238 GKVIGKHNGLMYHTLGQRKGLHIGGTKGGGGNEDPWFVGEKDLKRNVLIAVQGKDHPLLK 297 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVG 358 + +++W+ + + C VK R Q +P + DD + V F++ ++ Sbjct: 298 SEGLIASQLHWVN----RTPIAEVMTCTVKTRYRQTDIPCTIIPIDDENIKVIFDEPQIA 353 Query: 359 VASGQACVFYTSDSNEARVLGGGIISG 385 V GQ+ VFY D LGGGII Sbjct: 354 VTPGQSAVFYQDDV----CLGGGIIEK 376 >gi|294140592|ref|YP_003556570.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Shewanella violacea DSS12] gi|293327061|dbj|BAJ01792.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Shewanella violacea DSS12] Length = 376 Score = 494 bits (1272), Expect = e-137, Method: Composition-based stats. Identities = 130/402 (32%), Positives = 203/402 (50%), Gaps = 41/402 (10%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M E T LN + +V+V MSGGVDSSV A LL + GY V G+ ++ + Sbjct: 1 MAAIEPTALN---------NKKVIVGMSGGVDSSVSAYLLLKQGYQVEGLFMKNWEEDDT 51 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 52 DE---YCAAADDLKDAQAVCDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIIC 108 Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L + L AD +A GHY+R D + M R +D +DQSYFL+ Sbjct: 109 NKEIKFKAFLEFADEILDADFIAMGHYVRRS-----DETGQSRMLRGIDGNKDQSYFLYT 163 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR++A+EMGL DK DS ICF+ + K+ D + Sbjct: 164 LSHEQIARSLFPVGELEKSEVREIAKEMGLITHDKKDSTGICFIGERKFTDFLSTFLP-- 221 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294 A GDI G+++G+H G++ +T+GQR+GLG+ +P +VV + + + ++VG Sbjct: 222 AQPGDIETAEGEVIGKHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKEMDRNVLVVGQ 281 Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-----QRNDD 346 L Y +++W+ VD K VK R Q V + + +D Sbjct: 282 GGTHPRLMSLGFYADQLHWVD----RKGPVDEAKITVKTRYRQRDVACTLFLETNDKGED 337 Query: 347 GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388 + V F++ V GQ+ VFY+ + LGGGII R Sbjct: 338 TIRVLFDEPVAAVTPGQSAVFYSGE----LCLGGGIIDSLIR 375 >gi|50915203|ref|YP_061175.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes MGAS10394] gi|94995352|ref|YP_603450.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes MGAS10750] gi|50904277|gb|AAT87992.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pyogenes MGAS10394] gi|94548860|gb|ABF38906.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pyogenes MGAS10750] Length = 379 Score = 493 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 133/388 (34%), Positives = 197/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 9 DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 65 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 66 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 125 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 126 GADYVATGHYAQVKR----DENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 181 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H Sbjct: 182 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEH 239 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ +P FVV D + + + VG E+L + + I Sbjct: 240 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVI 299 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E F+C K R Q V V D V F + + + GQA VFY Sbjct: 300 HFTREMPEE----FTFECTAKFRYRQPDSQVTVHVRGDKAEVVFAEPQRAITPGQAVVFY 355 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGG+I + ++ + + Sbjct: 356 DG----KECLGGGMIDMAYKNGQPCQYI 379 >gi|139474609|ref|YP_001129325.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pyogenes str. Manfredo] gi|68053070|sp|Q5X9C1|MNMA_STRP6 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|166235086|sp|A2RH05|MNMA_STRPG RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205829106|sp|Q1J455|MNMA_STRPF RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|134272856|emb|CAM31137.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pyogenes str. Manfredo] Length = 373 Score = 493 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 133/388 (34%), Positives = 197/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 3 DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQVKR----DENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H Sbjct: 176 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ +P FVV D + + + VG E+L + + I Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E F+C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTREMPEE----FTFECTAKFRYRQPDSQVTVHVRGDKAEVVFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGG+I + ++ + + Sbjct: 350 DG----KECLGGGMIDMAYKNGQPCQYI 373 >gi|81615317|sp|Q6LT18|MNMA_PHOPR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|46912768|emb|CAG19558.1| putative (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Photobacterium profundum SS9] Length = 377 Score = 493 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 118/381 (30%), Positives = 197/381 (51%), Gaps = 28/381 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A +D+ DA Sbjct: 9 DNSQKKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDNEE---YCSAAEDLADA 65 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 66 QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 125 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY R + + M R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 126 LEADYIAMGHYTRRSFPTAE--GEKPKMLRGVDSNKDQSYFLYTLSHEQIARSLFPVGEL 183 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILG 254 +K VR +A E L A K DS ICF+ + K+ + + + A G I + G+++G Sbjct: 184 EKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGKIETADEGKVIG 241 Query: 255 RHNGIINYTIGQRRGL-------GVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304 H G++ +T+GQR+GL G + + +VV D + +IVG L+ + + Sbjct: 242 EHQGLMYHTLGQRKGLHIGGQKGGNGLEDAWYVVDKDLKRNVLIVGQGKDHPRLKSNGLV 301 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363 +++W+ + + C VK R Q+ +P + DD + V F++ ++ V GQ Sbjct: 302 ASQLDWVD----RQPIRETMTCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQ 357 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY+++ LGGGII Sbjct: 358 SAVFYSNEI----CLGGGIIE 374 >gi|114706635|ref|ZP_01439536.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fulvimarina pelagi HTCC2506] gi|114538027|gb|EAU41150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fulvimarina pelagi HTCC2506] Length = 394 Score = 493 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 213/384 (55%), Positives = 271/384 (70%), Gaps = 6/384 (1%) Query: 6 ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65 T LNSLD+ K P+D RV+VAMSGGVDSSV AA+LK +GYDV+G+TLQLY++ + G Sbjct: 2 TTHLNSLDIPKAPEDTRVIVAMSGGVDSSVTAAILKDEGYDVVGITLQLYDAGDTPAKAG 61 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 +CCAGQD+ DARRVCD + + HYV DYEE FR AVI PFA +Y AGETP+PCV CN+TVK Sbjct: 62 ACCAGQDIRDARRVCDLLGIPHYVLDYEENFREAVIDPFADAYVAGETPIPCVSCNQTVK 121 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F DLL LG D LATGHYI SR R + RP DL+RDQSYFL+ TTQ+Q+ Sbjct: 122 FRDLLKTAMDLGGDALATGHYIESRKR-----GNHRSLHRPFDLDRDQSYFLYGTTQKQV 176 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 LRFPL + K+ R++A + GL IA K DSQDICFV G+Y D+V+R+ G+I Sbjct: 177 DFLRFPLASLTKDETREIAAKHGLAIASKPDSQDICFVPTGRYSDLVRRLRPEAGDPGEI 236 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 VH++G++LG H GIINYT+GQRRGLGVA GEPL+VV LD + RV+VGPRE+L + L Sbjct: 237 VHIDGRVLGEHEGIINYTVGQRRGLGVAAGEPLYVVKLDPATRRVVVGPREALATRAVRL 296 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQA 364 RE+NWL + E + + FVK+RS++ P P + + +G + V+ +E GVA GQA Sbjct: 297 REVNWLAEESAEVYATETREIFVKLRSTRPPSPARLAADGEGGWMVELLAAEYGVAKGQA 356 Query: 365 CVFYTSDSNEARVLGGGIISGSKR 388 CVFY ++ A VLGGGII GS + Sbjct: 357 CVFYGAEGAGAEVLGGGIIDGSIQ 380 >gi|327480910|gb|AEA84220.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas stutzeri DSM 4166] Length = 362 Score = 493 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 127/374 (33%), Positives = 194/374 (51%), Gaps = 26/374 (6%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83 +V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VCD I Sbjct: 2 IVGMSGGVDSSVSALLLLEQGYQVEGLFMKNWEEDDGTE---YCTAKEDLADAQAVCDRI 58 Query: 84 NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143 + + ++ + + V F + Y AG TP P + CNR +KF L LGAD++AT Sbjct: 59 GIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLIAT 118 Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 GHY+R R D R + + +D +DQSYFL A +QL FP+G+++K VR + Sbjct: 119 GHYVRRR-----DRDGRSELLKGLDPNKDQSYFLHAVGGEQLAKTLFPVGELEKPEVRAI 173 Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263 A + GL A K DS ICF+ + ++ D +K+ A G+I ++G+++GRH+G++ +T Sbjct: 174 AEKHGLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGNIETVDGEVIGRHHGLMYHT 231 Query: 264 IGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315 IGQR+GLG+ EP +V+ D + +IVG L + EI W+ Sbjct: 232 IGQRQGLGIGGLKDASDEPWYVLSKDLQRNVLIVGQGNDHPWLFSRALLASEIYWVNPVD 291 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 K K+R Q +++ DG FE + V GQ+ VFY + Sbjct: 292 LS----APLKLTAKVRYRQSDQACTLEQTSDGYRAVFEVPQRAVTPGQSVVFYDGEV--- 344 Query: 376 RVLGGGIISGSKRS 389 LGGG+I ++ Sbjct: 345 -CLGGGVIEQAEPW 357 >gi|269960819|ref|ZP_06175190.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio harveyi 1DA3] gi|269834483|gb|EEZ88571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio harveyi 1DA3] Length = 380 Score = 493 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 122/383 (31%), Positives = 197/383 (51%), Gaps = 28/383 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 60 QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119 Query: 136 LGADVLATGHYIRSRLYVGD---DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 L AD +A GHY+R + + + M R +D +DQSYFL+ + +Q+ FP+ Sbjct: 120 LDADYIAMGHYVRRSFPENALPGEEQEKPQMLRGLDGNKDQSYFLYTLSNEQIARSLFPV 179 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 GD++K VR +A E L A K DS ICF+ + K+ + + R A G+I G++ Sbjct: 180 GDLEKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEV 237 Query: 253 LGRHNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLEVHR 302 +G+H G++ +T+GQR+GL + +P FV D + +I L+ Sbjct: 238 IGQHQGLMYHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEG 297 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVAS 361 + +++W+ + + D KC VK R Q+ +P + DD + V F++ ++ V Sbjct: 298 LLASQLHWVD----REPIRDVMKCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTP 353 Query: 362 GQACVFYTSDSNEARVLGGGIIS 384 GQ+ VFY D LGGGII Sbjct: 354 GQSAVFYKDDV----CLGGGIIE 372 >gi|329116668|ref|ZP_08245385.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus parauberis NCFD 2020] gi|326907073|gb|EGE53987.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus parauberis NCFD 2020] Length = 372 Score = 493 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 134/388 (34%), Positives = 197/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + + RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 2 DNSNTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDELGVCTATEDYKDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 59 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYKAGRTPNPDVMCNKEIKFKAFLDYAMTL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 119 GADYVATGHYAQ----IERDQYGTVHMLRGVDNGKDQTYFLSQLSQKQLQKTLFPLGHLQ 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A + GL A K DS ICF+ + + + + A +G ++ ++G+ +G H Sbjct: 175 KPEVRAIAEKAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMLTVDGRDMGEH 232 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ +P FVV D + + + VG ESL + I Sbjct: 233 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASTI 292 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E +C K R Q V V D V F++ + + GQA VFY Sbjct: 293 HFTKEMPEE----FTMECTAKFRYRQPDSKVTVHVKGDKAEVIFDEEQRAITPGQAVVFY 348 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGGII + ++ + + Sbjct: 349 DG----QECLGGGIIDMAFKNGQPCQYI 372 >gi|217973050|ref|YP_002357801.1| tRNA-specific 2-thiouridylase MnmA [Shewanella baltica OS223] gi|205821978|sp|A3D5F8|MNMA_SHEB5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|254811460|sp|B8E945|MNMA_SHEB2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|217498185|gb|ACK46378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella baltica OS223] Length = 372 Score = 493 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 126/385 (32%), Positives = 200/385 (51%), Gaps = 27/385 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ +V+V MSGGVDSSV A LL + GY V G+ ++ + ++ C A +D+ Sbjct: 4 IEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNNE---YCAAAEDL 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 61 KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 120 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + L AD +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+ Sbjct: 121 DEILDADYIAMGHYVRRR----DNSDGSTQMLRGVDGNKDQSYFLYTLSHEQVARSLFPV 176 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR++A+EMGL DK DS ICF+ + K+ + + A G+I G++ Sbjct: 177 GELEKHEVREIAKEMGLITHDKKDSTGICFIGERKFTEFLGTYLP--AQPGNIETPEGEV 234 Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304 +G H G++ +T+GQR+GLG+ +P +VV D + +IV G L + Sbjct: 235 IGTHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKDLERNVLIVGQGGHHPRLMSTGMT 294 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363 + +++W+ VDG VK R Q VP + D+ + V F++ V GQ Sbjct: 295 VNQLHWVD----RTGPVDGCHIAVKTRYRQQDVPCTLTYTDEHTLGVVFDEPVAAVTPGQ 350 Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388 + VFY + LGGGII R Sbjct: 351 SAVFYDGEV----CLGGGIIDQLIR 371 >gi|22125693|ref|NP_669116.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis KIM 10] gi|45441579|ref|NP_993118.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis biovar Microtus str. 91001] gi|51596752|ref|YP_070943.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pseudotuberculosis IP 32953] gi|108807881|ref|YP_651797.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis Antiqua] gi|108812155|ref|YP_647922.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis Nepal516] gi|145599092|ref|YP_001163168.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis Pestoides F] gi|149366398|ref|ZP_01888432.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis CA88-4125] gi|162421419|ref|YP_001607233.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis Angola] gi|165925423|ref|ZP_02221255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Orientalis str. F1991016] gi|165938528|ref|ZP_02227085.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Orientalis str. IP275] gi|166008070|ref|ZP_02228968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Antiqua str. E1979001] gi|166211105|ref|ZP_02237140.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Antiqua str. B42003004] gi|167401703|ref|ZP_02307194.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167421866|ref|ZP_02313619.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167426312|ref|ZP_02318065.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470788|ref|ZP_02335492.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis FV-1] gi|170023961|ref|YP_001720466.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pseudotuberculosis YPIII] gi|186895819|ref|YP_001872931.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pseudotuberculosis PB1/+] gi|218928774|ref|YP_002346649.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pestis CO92] gi|229841625|ref|ZP_04461783.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229843742|ref|ZP_04463885.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229894486|ref|ZP_04509668.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis Pestoides A] gi|229902476|ref|ZP_04517595.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis Nepal516] gi|270490345|ref|ZP_06207419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis KIM D27] gi|294504164|ref|YP_003568226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis Z176003] gi|24638321|sp|Q8ZFQ5|MNMA_YERPE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|73920130|sp|Q669Q4|MNMA_YERPS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|122980130|sp|Q1CI58|MNMA_YERPN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|123245748|sp|Q1C6S0|MNMA_YERPA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205828988|sp|B2K711|MNMA_YERPB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205828989|sp|A9R0L5|MNMA_YERPG RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205828990|sp|A4TLN3|MNMA_YERPP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205828991|sp|B1JI67|MNMA_YERPY RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|21958608|gb|AAM85367.1|AE013782_8 hypothetical protein y1799 [Yersinia pestis KIM 10] gi|45436440|gb|AAS61995.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Microtus str. 91001] gi|51590034|emb|CAH21668.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pseudotuberculosis IP 32953] gi|108775803|gb|ABG18322.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis Nepal516] gi|108779794|gb|ABG13852.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis Antiqua] gi|115347385|emb|CAL20283.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis CO92] gi|145210788|gb|ABP40195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis Pestoides F] gi|149290772|gb|EDM40847.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis CA88-4125] gi|162354234|gb|ABX88182.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis Angola] gi|165913643|gb|EDR32263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Orientalis str. IP275] gi|165922532|gb|EDR39683.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Orientalis str. F1991016] gi|165992452|gb|EDR44753.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Antiqua str. E1979001] gi|166208285|gb|EDR52765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Antiqua str. B42003004] gi|166960351|gb|EDR56372.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167048808|gb|EDR60216.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167054667|gb|EDR64471.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750495|gb|ACA68013.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pseudotuberculosis YPIII] gi|186698845|gb|ACC89474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pseudotuberculosis PB1/+] gi|229680522|gb|EEO76619.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis Nepal516] gi|229689350|gb|EEO81413.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Orientalis str. India 195] gi|229694088|gb|EEO84136.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229703505|gb|EEO90522.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis Pestoides A] gi|262362281|gb|ACY59002.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis D106004] gi|262366214|gb|ACY62771.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis D182038] gi|270338849|gb|EFA49626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis KIM D27] gi|294354623|gb|ADE64964.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pestis Z176003] gi|320014781|gb|ADV98352.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 371 Score = 493 bits (1271), Expect = e-137, Method: Composition-based stats. Identities = 126/378 (33%), Positives = 200/378 (52%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDDEE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGMELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + D + + R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 120 LGADYIATGHYVRRQ-----DVDGKSRLLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++ L A K DS ICF+ + K+ D + R A G I+ ++GQ++G+ Sbjct: 175 EKPEVRRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQLVGK 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ +P +VV D +S+ ++V L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGGDDPWYVVDKDLDSNTLLVAQGHEHPRLMSVGLVAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366 ++W+ V F+C VK R Q +P V DD V V F+ V GQ+ V Sbjct: 293 LHWVD----RQPVTAPFRCVVKTRYRQQDIPCTVTPLDDERVDVRFDDPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 349 FYQGEI----CLGGGIIE 362 >gi|161936317|ref|YP_129360.2| tRNA-specific 2-thiouridylase MnmA [Photobacterium profundum SS9] Length = 371 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 118/381 (30%), Positives = 197/381 (51%), Gaps = 28/381 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A +D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDNEE---YCSAAEDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 60 QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY R + + M R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 120 LEADYIAMGHYTRRSFPTAE--GEKPKMLRGVDSNKDQSYFLYTLSHEQIARSLFPVGEL 177 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILG 254 +K VR +A E L A K DS ICF+ + K+ + + + A G I + G+++G Sbjct: 178 EKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGKIETADEGKVIG 235 Query: 255 RHNGIINYTIGQRRGL-------GVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304 H G++ +T+GQR+GL G + + +VV D + +IVG L+ + + Sbjct: 236 EHQGLMYHTLGQRKGLHIGGQKGGNGLEDAWYVVDKDLKRNVLIVGQGKDHPRLKSNGLV 295 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363 +++W+ + + C VK R Q+ +P + DD + V F++ ++ V GQ Sbjct: 296 ASQLDWVD----RQPIRETMTCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQ 351 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY+++ LGGGII Sbjct: 352 SAVFYSNEI----CLGGGIIE 368 >gi|157375020|ref|YP_001473620.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella sediminis HAW-EB3] gi|189040509|sp|A8FUG9|MNMA_SHESH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|157317394|gb|ABV36492.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella sediminis HAW-EB3] Length = 372 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 129/398 (32%), Positives = 202/398 (50%), Gaps = 37/398 (9%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + E T +N + +V+V MSGGVDSSV A LL + GY V G+ ++ + Sbjct: 1 MALIEPTAIN---------NKKVIVGMSGGVDSSVSAYLLLKQGYQVEGLFMKNWEEDDT 51 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 52 DE---YCAAADDLKDAQAVCDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIIC 108 Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L L AD +A GHY+R D + M R D +DQSYFL+ Sbjct: 109 NKEIKFKAFLEFADDILDADYIAMGHYVRRS-----DESGQSQMLRGRDGNKDQSYFLYT 163 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR++A+EMGL DK DS ICF+ + K+ D + Sbjct: 164 LSHEQISRSLFPVGELEKSEVREIAKEMGLVTHDKKDSTGICFIGERKFTDFLSTFLP-- 221 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV-- 292 A G+I G+I+G+H G++ +T+GQR+GLG+ +P +VV + + + ++V Sbjct: 222 AQPGNIETAEGEIIGKHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKEMDRNVLVVGQ 281 Query: 293 -GPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYV 350 G L Y +++W+ +DG + VK R Q V + DD + V Sbjct: 282 GGHHPRLMSVGFYADQLHWVD----RKGPIDGAQITVKTRYRQRDVACTLTYEGDDRIKV 337 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388 F++ V GQ+ VFY ++ LGGGII R Sbjct: 338 IFDEPVAAVTPGQSAVFYDAE----LCLGGGIIDSLIR 371 >gi|229135219|ref|ZP_04264018.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus BDRD-ST196] gi|228648261|gb|EEL04297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus BDRD-ST196] Length = 376 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 136/388 (35%), Positives = 200/388 (51%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P++ RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ A+ G C A +D Sbjct: 6 MNKLPQETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDDTDAN---GVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A E GL A K DS ICF+ + + + A G + L+G++ Sbjct: 178 ELKKPQIREMATEAGLATAAKKDSTGICFIGERNFKGFLSNYLP--AQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + + Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 295 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + E F C K R Q V VQ +++ V + ++ + GQA VFY Sbjct: 296 WVSNKAKE----KEFTCTAKFRYRQADNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 351 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I S + L Sbjct: 352 DGD----ECLGGATIDEVYHSGKKLDYL 375 >gi|205822155|sp|Q131Q8|MNMA_RHOPS RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 398 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 221/401 (55%), Positives = 282/401 (70%), Gaps = 12/401 (2%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL+ P+D RVVVAMSGGVDSS AALLK GYDV+G+TLQLY+ A+ RKG+CC Sbjct: 2 LNSLDLEGRPQDTRVVVAMSGGVDSSATAALLKSQGYDVVGITLQLYDHGAATHRKGACC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V + I + HYV DYE RFR +VI FA SYA GETP+PC++CNR+VKF D Sbjct: 62 AGQDIHDARAVAERIGIPHYVLDYESRFRESVIDSFADSYALGETPVPCIECNRSVKFRD 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R+LGA LATGHY+ SR DDG R + D +RDQSYFLFATT++QL L Sbjct: 122 LLATARELGASALATGHYVSSRRL--DDGS--RALICAADRDRDQSYFLFATTREQLDFL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K R+LAR+ GL +ADK DSQDICFV G+Y DVV+R+ G+IV L Sbjct: 178 RFPLGDMTKPQTRELARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGEIVDL 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 NG +LG H GI+++T+GQRRGLG+A PL+V+ LD RV+VGPRE+L + RI LR++ Sbjct: 238 NGHVLGSHPGIVHFTVGQRRGLGIASRAPLYVLRLDAAHRRVVVGPREALRMERIVLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GDG + AV DG + FV++RS++ P P +++ G V+ E GV+ GQACVFY Sbjct: 298 NWIGDGAIDQAVGDGLELFVRVRSTRAPQPAWLRAVGGGYEVELVAGEEGVSPGQACVFY 357 Query: 369 TSDSNEARVLGGGIISGSK--------RSDAVEESLLSVIG 401 + +ARVLGGG I + R DA +L ++ G Sbjct: 358 DAADGQARVLGGGFIKSAAPRWSADGVRDDAASPALAAMRG 398 >gi|331682639|ref|ZP_08383258.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli H299] gi|331080270|gb|EGI51449.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli H299] Length = 368 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VC Sbjct: 6 KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L LGAD Sbjct: 63 DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G+ Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +T+GQR+GLG+ EP +VV D ++ +IV L + ++++W+ Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWV 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370 + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYDG 351 Query: 371 DSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 EV----CLGGGIIE 361 >gi|94989481|ref|YP_597582.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes MGAS9429] gi|94993368|ref|YP_601467.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes MGAS2096] gi|94542989|gb|ABF33038.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pyogenes MGAS9429] gi|94546876|gb|ABF36923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pyogenes MGAS2096] Length = 379 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 133/388 (34%), Positives = 197/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 9 DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 65 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 66 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 125 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 126 GADYVATGHYAQVKR----DENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 181 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H Sbjct: 182 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEH 239 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ +P FVV D + + + VG E+L + + I Sbjct: 240 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVI 299 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E F+C K R Q V V D V F + + + GQA VFY Sbjct: 300 HFTREMPEE----FTFECTAKFRYRQPDSHVTVHVRGDKAEVVFAEPQRAITPGQAVVFY 355 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGG+I + ++ + + Sbjct: 356 DG----KECLGGGMIDMAYKNGQPCQYI 379 >gi|261856534|ref|YP_003263817.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Halothiobacillus neapolitanus c2] gi|261837003|gb|ACX96770.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Halothiobacillus neapolitanus c2] Length = 377 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 126/380 (33%), Positives = 196/380 (51%), Gaps = 20/380 (5%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K P+D RV+V +SGGVDSSV A L GY V G+ ++ + + C A D+ D Sbjct: 7 KRPQDTRVIVGLSGGVDSSVAALRLIEAGYQVEGLFMKNWEGDDNDE---YCAAKADMLD 63 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A V D + + + ++ + + + V F Y AG TP P + CNR +KF L R Sbjct: 64 ALSVADRLGIEFHFVNFAQDYWDRVFAHFLDEYRAGRTPNPDILCNREIKFRAFLDHART 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY R + + DD + + +D +DQSYFL A +++QL FP+G+M Sbjct: 124 LGADYIATGHYARVQHALPDDS-GETCLLKGLDANKDQSYFLHALSREQLASALFPIGEM 182 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + G A K DS ICF+ + ++ + +K A GDIV ++GQ++G+ Sbjct: 183 EKPEVRRIAEQAGFKTATKKDSTGICFIGERRFSEFLKTYLP--AQPGDIVTVDGQVVGQ 240 Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +TIGQR+GLG+ +P +V + + +IV +L + + Sbjct: 241 HQGLMYHTIGQRQGLGIGGLRDQGDQPWYVAGKNLGDNTLIVAQGQDHPALFAPALRAGQ 300 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACV 366 I+W+ D + KIR Q P V + D + V F++ + + GQ+ V Sbjct: 301 IHWINDPTKLVGPY-PLRLTAKIRYRQPDQPCTVMTISKDQLQVVFDQPQRAITPGQSIV 359 Query: 367 FYTSDSNEARVLGGGIISGS 386 FY D LGG +I + Sbjct: 360 FYHGDV----CLGGAVIEEA 375 >gi|205829103|sp|Q1J988|MNMA_STRPB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205829104|sp|Q1JJD5|MNMA_STRPC RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 373 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 133/388 (34%), Positives = 197/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 3 DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQVKR----DENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H Sbjct: 176 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ +P FVV D + + + VG E+L + + I Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E F+C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTREMPEE----FTFECTAKFRYRQPDSHVTVHVRGDKAEVVFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGG+I + ++ + + Sbjct: 350 DG----KECLGGGMIDMAYKNGQPCQYI 373 >gi|205822040|sp|A9MG80|MNMA_SALAR RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 368 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 124/381 (32%), Positives = 199/381 (52%), Gaps = 30/381 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + ++PK +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ Sbjct: 1 MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 56 ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115 Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 LGAD +ATGHY+R D + + R +D +DQSYFL+ +Q+ FP+ Sbjct: 116 AEDLGADYIATGHYVRRV-----DINGKSRLLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR +A ++GL A K DS ICF+ + K+ D + R A G I+ ++G Sbjct: 171 GELEKPQVRKIAEDLGLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDE 228 Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304 +G H G++ +T+GQR+GLG+ +P +VV D ++ +IV L + Sbjct: 229 IGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGHEHPRLMSSGLI 288 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363 ++++W+ + C VK R Q +P + +DD + V F++ V GQ Sbjct: 289 AQQLHWVD----REPFTGTLSCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQ 344 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY+ + LGGGII Sbjct: 345 SAVFYSGEV----CLGGGIIE 361 >gi|261252577|ref|ZP_05945150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio orientalis CIP 102891] gi|260935968|gb|EEX91957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio orientalis CIP 102891] Length = 378 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 123/382 (32%), Positives = 197/382 (51%), Gaps = 27/382 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA Sbjct: 7 DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 63 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 64 QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 123 Query: 136 LGADVLATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 L AD +A GHY+R ++ + M R +D +DQSYFL+ + Q+ FP+G Sbjct: 124 LDADYIAMGHYVRRTFPTAEELAAGEKPKMLRGLDGNKDQSYFLYTLSSDQVARSLFPVG 183 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR +A E L A K DS ICF+ + K+ D + R A G+I G+++ Sbjct: 184 ELEKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTDFLGRYLP--AQPGNIETPEGKVI 241 Query: 254 GRHNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 G+HNG++ +T+GQR+GL + +P FV D + +I L+ + Sbjct: 242 GQHNGLMYHTLGQRKGLHIGGQKGGGGNEDPWFVGDKDLKRNVLIAVQGKDHPMLKSQGL 301 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASG 362 +++W+ DA+ + +C VK R Q +P + DD + V F++ +V V G Sbjct: 302 IASQLHWVD----RDAIKEPLQCTVKTRYRQTDIPCTIIPIDDENIKVIFDEPQVAVTPG 357 Query: 363 QACVFYTSDSNEARVLGGGIIS 384 Q+ VFY + LGGGII Sbjct: 358 QSAVFYKDEV----CLGGGIIE 375 >gi|306826439|ref|ZP_07459751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pyogenes ATCC 10782] gi|304431369|gb|EFM34366.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pyogenes ATCC 10782] Length = 378 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 133/388 (34%), Positives = 197/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 8 DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 64 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 65 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 124 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 125 GADYVATGHYAQVKR----DENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 180 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H Sbjct: 181 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEH 238 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ +P FVV D + + + VG E+L + + I Sbjct: 239 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVI 298 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E F+C K R Q V V D V F + + + GQA VFY Sbjct: 299 HFTREMPEE----FTFECTAKFRYRQPDSHVTVHVRGDKAEVVFAEPQRAITPGQAVVFY 354 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGG+I + ++ + + Sbjct: 355 DG----KECLGGGMIDMAYKNGQPCQYI 378 >gi|222153939|ref|YP_002563116.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus uberis 0140J] gi|254811465|sp|B9DWD3|MNMA_STRU0 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|222114752|emb|CAR43910.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus uberis 0140J] Length = 373 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 136/388 (35%), Positives = 198/388 (51%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 3 DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F S Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLSEYKAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + R D M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQVRR----DEDGIVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHLQ 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H Sbjct: 176 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ +P FVV D + + + VG ESL + I Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSKNILYVGQGFYHESLMSTSLQASVI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E +C K R Q V V + V F++ + + GQA VFY Sbjct: 294 HFTRDMPSE----FTLECTAKFRYRQPDSKVTVYVKGEHAEVVFDEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 ++ LGGGII + + + + Sbjct: 350 DAE----ECLGGGIIDMAFKDGVACQYI 373 >gi|153950153|ref|YP_001400589.1| tRNA-specific 2-thiouridylase MnmA [Yersinia pseudotuberculosis IP 31758] gi|205828987|sp|A7FH61|MNMA_YERP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|152961648|gb|ABS49109.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Yersinia pseudotuberculosis IP 31758] Length = 371 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 126/378 (33%), Positives = 200/378 (52%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDDEE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGMELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + D + + R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 120 LGADYIATGHYVRRQ-----DVDGKSRLLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++ L A K DS ICF+ + K+ D + R A G I+ ++GQ++G+ Sbjct: 175 EKPEVRRIAEQLDLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIMTVDGQLVGK 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ +P +VV D +S+ ++V L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGGDDPWYVVDKDLDSNTLLVAQGHEHPRLMSVGLVAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366 ++W+ V F+C VK R Q +P V DD V V F+ V GQ+ V Sbjct: 293 LHWVD----RQPVTAPFRCVVKTRYRQQDIPCTVTPLDDERVDVRFDDPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 349 FYQGEI----CLGGGIIE 362 >gi|260779096|ref|ZP_05887988.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio coralliilyticus ATCC BAA-450] gi|260605260|gb|EEX31555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio coralliilyticus ATCC BAA-450] Length = 373 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 121/381 (31%), Positives = 190/381 (49%), Gaps = 28/381 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA Sbjct: 7 DNSKKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 63 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 64 QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY+R D + M R +D +DQSYFL+ + Q+ FP+G++ Sbjct: 124 LDADYIAMGHYVRRTF---PDNGEKPQMLRGLDGNKDQSYFLYTLSSDQIARSLFPVGEL 180 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E L A K DS ICF+ + K+ D + R A G I G+++G Sbjct: 181 EKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTDFLSRYLP--AQPGKIETPEGKVIGE 238 Query: 256 HNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYL 305 H G++ +T+GQR+GL + +P +V D + +I L+ + Sbjct: 239 HQGLMYHTLGQRKGLHIGGQKGGGGNEDPWYVADKDLKRNVLIAVQGAEHPLLKSQGLIA 298 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQA 364 +++W+ + + +C VK R Q +P + DD + V F+ +V V GQ+ Sbjct: 299 SQLHWVD----REIIKAPLQCSVKTRYRQTDIPCTIIPIDDENIKVIFDDPQVAVTPGQS 354 Query: 365 CVFYTSDSNEARVLGGGIISG 385 VFY D LGGGII Sbjct: 355 AVFYKDDV----CLGGGIIEK 371 >gi|239994884|ref|ZP_04715408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alteromonas macleodii ATCC 27126] Length = 369 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 124/383 (32%), Positives = 196/383 (51%), Gaps = 28/383 (7%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 ++ +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A +D+ D Sbjct: 5 ESNASKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNDE---YCAAAEDLKD 61 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TR 134 A+ V D + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 62 AQAVADKLGIELHTINFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLEFAAE 121 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD +ATGHY+R R G + M R +D +DQSYFL+ ++ + FP+GD Sbjct: 122 DLGADYIATGHYVRRREVDG-----KWQMLRGLDNNKDQSYFLYTLGEEHVAKTLFPVGD 176 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K VR +A E GL DK DS ICF+ + K+ D + R A G I G+ +G Sbjct: 177 IEKPLVRKIAEEQGLITHDKKDSTGICFIGERKFKDFLARYLP--AQPGVIETAEGEEIG 234 Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 +H G++ +T+GQR+GL + +P +VV D + +IVG L + + Sbjct: 235 QHEGLMYHTLGQRKGLHIGGLAKYGDDPWYVVDKDVARNVLIVGQGADHPRLYSKGLVAK 294 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQAC 365 +++W+ + + + VK R Q +P + DD + V F++ + V GQ+ Sbjct: 295 QLHWVD----RKTITEPVRAVVKTRYRQADIPCTITPTQDDTIEVIFDEPQKAVTPGQSA 350 Query: 366 VFYTSDSNEARVLGGGIISGSKR 388 VFY+ + LGGGII R Sbjct: 351 VFYSDEV----CLGGGIIESYIR 369 >gi|161950103|ref|YP_403605.2| tRNA-specific 2-thiouridylase MnmA [Shigella dysenteriae Sd197] gi|309788203|ref|ZP_07682809.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shigella dysenteriae 1617] gi|205821961|sp|Q32EZ1|MNMA_SHIDS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|308924055|gb|EFP69556.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shigella dysenteriae 1617] Length = 368 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VC Sbjct: 6 KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L LGAD Sbjct: 63 DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAKSLFPVGELEKPQ 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G+ Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +T+GQR+GLG+ EP +VV D ++ +IV L + ++++W+ Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSIGLIAQQLHWV 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370 + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNG 351 Query: 371 DSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 EV----CLGGGIIE 361 >gi|188494195|ref|ZP_03001465.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 53638] gi|188489394|gb|EDU64497.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 53638] Length = 368 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 122/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VC Sbjct: 6 KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L LGAD Sbjct: 63 DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G+ Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +T+GQR+GLG+ EP +VV D ++ ++V L + ++++W+ Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWV 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370 + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYDG 351 Query: 371 DSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 EV----CLGGGIIE 361 >gi|304407559|ref|ZP_07389211.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paenibacillus curdlanolyticus YK9] gi|304343510|gb|EFM09352.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paenibacillus curdlanolyticus YK9] Length = 376 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 138/378 (36%), Positives = 192/378 (50%), Gaps = 25/378 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K + RVVV MSGGVDSSV A LLK++GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MVKTKAETRVVVGMSGGVDSSVTALLLKQEGYDVIGIFMKNWDD---TDEFGHCTAEEDA 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RRVCD I + +Y ++E+++ + V F Y G TP P V CNR +KF + L Sbjct: 58 EDVRRVCDQIGIPYYTVNFEQQYFDKVFTYFLDEYKRGRTPNPDVMCNREIKFGEFLQKA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD LATGHY R + R +D +DQ+YFL Q QL FP+G Sbjct: 118 IDLGADYLATGHYARVERTA----NGETKLLRGVDSNKDQTYFLHQLDQSQLAKAMFPIG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252 D+ K VR +A E GL A K DS +CF+ + + + A G ++ L +G+ Sbjct: 174 DLPKPEVRRIAEEAGLATAKKKDSTGVCFIGERNFKQFLSGYLP--AQPGPMIDLRSGET 231 Query: 253 LGRHNGIINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLR 306 G+H+G++ YT+GQR+ G GEP FV D + + V +S L R+ Sbjct: 232 KGQHDGLMYYTLGQRQGLGIGGSGNGEPWFVADKDLERNILYVVQGDSHARLYSERLTAE 291 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365 INW+ E + C K R Q V V + DG V F++ + + GQA Sbjct: 292 GINWISPNRPEGPIT----CTAKFRYRQADQGVTVTLSADGMAEVVFDQPQKAITPGQAV 347 Query: 366 VFYTSDSNEARVLGGGII 383 VFY D LGGG I Sbjct: 348 VFYDGDI----CLGGGTI 361 >gi|117920194|ref|YP_869386.1| tRNA-specific 2-thiouridylase MnmA [Shewanella sp. ANA-3] gi|166235083|sp|A0KW11|MNMA_SHESA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|117612526|gb|ABK47980.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella sp. ANA-3] Length = 372 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 122/385 (31%), Positives = 200/385 (51%), Gaps = 27/385 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A +D+ Sbjct: 4 IEPTHTGKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDNDE---YCAAAEDL 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 61 KDAQAVCDKLGIKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLDFA 120 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 L AD +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+ Sbjct: 121 DDILDADYIAMGHYVRRR----DNADGTTQMLRGVDNNKDQSYFLYTLSHEQVARSLFPV 176 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR++A++MGL DK DS ICF+ + K+ + + A G+I G+I Sbjct: 177 GELEKHEVREIAKKMGLITHDKKDSTGICFIGERKFTEFLGNYLP--AQPGNIETAEGEI 234 Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304 +G+H G++ T+GQR+GLG+ +P +VV D + ++V G L + + Sbjct: 235 IGKHQGLMYQTLGQRKGLGIGGMKNSNDDPWYVVDKDLKRNVLVVGQGGHHPRLMSNGML 294 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363 + +++W+ +G + VK R Q +P + +D+ + V F++ V GQ Sbjct: 295 VNQLHWVD----RKGPAEGSQIVVKTRYRQQDIPCTLTYLDDNTLKVVFDEPVAAVTPGQ 350 Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388 + VFY + LGGGII R Sbjct: 351 SAVFYDGEV----CLGGGIIDQLIR 371 >gi|308070334|ref|YP_003871939.1| Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paenibacillus polymyxa E681] gi|305859613|gb|ADM71401.1| Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paenibacillus polymyxa E681] Length = 373 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 139/383 (36%), Positives = 202/383 (52%), Gaps = 24/383 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MAKANHETRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDEFGRCTAEEDA 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RRVC+ I++ +Y ++E+ + + V F Y AG TP P V CNR +KF + L+ Sbjct: 58 EDVRRVCEQIDIPYYTVNFEKEYFDKVFSYFLDEYKAGRTPNPDVMCNREIKFGEFLNKA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + V +DG + R +D +DQ+YFL A +Q QL FP+G Sbjct: 118 LDLGADYVATGHYAQ---VVEEDG--HFTLLRGVDSNKDQTYFLNALSQTQLSRAMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252 + K VR +A GL A K DS +CF+ + + + + A GD+V + G++ Sbjct: 173 HLPKPEVRKIAEAAGLYTAKKKDSTGVCFIGERNFKEFLSGYLP--AKGGDMVDIATGEV 230 Query: 253 LGRHNGIINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 GRH+G++ YT+GQR+ G GEP FV D + + V SL + Sbjct: 231 KGRHDGLMYYTLGQRQGLGIGGSGSGEPWFVADKDLEKNILYVVQGDRHHSLYSTSLIAT 290 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365 ++NW+ + F+C K R Q V +Q DG V+V F+ + + GQA Sbjct: 291 DVNWIEGA--DTRPTSEFRCTAKFRYRQPDQQVTLQWLADGTVHVIFDVHQKAITPGQAV 348 Query: 366 VFYTSDSNEARVLGGGIISGSKR 388 VFY + R LGGG I ++ Sbjct: 349 VFYDGE----RCLGGGTIDKVEK 367 >gi|157962359|ref|YP_001502393.1| tRNA-specific 2-thiouridylase MnmA [Shewanella pealeana ATCC 700345] gi|157847359|gb|ABV87858.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella pealeana ATCC 700345] Length = 398 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 128/380 (33%), Positives = 195/380 (51%), Gaps = 28/380 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A D+ DA+ V Sbjct: 37 GKKVIVGMSGGVDSSVSAYLLMKQGYQVEGLFMKNWEEDDTDE---YCAAADDLKDAQAV 93 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGA 138 CD + + + ++ + + V F + Y AG TP P + CN+ +KF L + L A Sbjct: 94 CDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDA 153 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +A GHY+R R D M R +D +DQSYFL+ +Q+ FP+G++ K Sbjct: 154 DYIAMGHYVRRR-----DIDGTSQMLRGVDGNKDQSYFLYTLGYEQVARSLFPVGELDKS 208 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+EMGL DK DS ICF+ + K+ D ++ A G+I G+++G H G Sbjct: 209 EVREIAKEMGLITHDKKDSTGICFIGERKFTDFLQTFLP--AQPGNIETSEGEVIGTHQG 266 Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 ++ +T+GQR+GLG+ +P +VV D + +IVG L + + +++W Sbjct: 267 LMYHTLGQRKGLGIGGLKNSNDDPWYVVEKDLVRNVLIVGQGGNHPRLMSNGLVANQLHW 326 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYT 369 + +G K VK R Q VP V + DD + V F++ V GQ+ VFY Sbjct: 327 VD----RKGPANGSKITVKTRYRQQDVPCSVTYDSDDVLRVIFDEPVAAVTPGQSAVFYD 382 Query: 370 SDSNEARVLGGGIISGSKRS 389 + LGGGII R Sbjct: 383 GEI----CLGGGIIDALIRD 398 >gi|168239141|ref|ZP_02664199.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194738212|ref|YP_002114241.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713714|gb|ACF92935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288113|gb|EDY27500.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 368 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 125/381 (32%), Positives = 200/381 (52%), Gaps = 30/381 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + +NPK +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ Sbjct: 1 MSENPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 56 ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115 Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 LGAD +ATGHY+R D + + R +D +DQSYFL+ +Q+ FP+ Sbjct: 116 AEDLGADYIATGHYVRRA-----DVNGKSRLLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR +A ++GL A K DS ICF+ + K+ D + R A G I+ ++G Sbjct: 171 GELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDE 228 Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304 +G H G++ +T+GQR+GLG+ +P +VV D ++ +IV L + Sbjct: 229 IGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGHEHPRLMSVGLI 288 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363 ++++W+ + +C VK R Q +P + +DD + V F++ V GQ Sbjct: 289 AQQLHWVD----REPFTGTLRCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQ 344 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY+ + LGGGII Sbjct: 345 SAVFYSGEV----CLGGGIIE 361 >gi|170768217|ref|ZP_02902670.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia albertii TW07627] gi|170122983|gb|EDS91914.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia albertii TW07627] Length = 368 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VC Sbjct: 6 KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L LGAD Sbjct: 63 DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 123 YIATGHYVRRA-----DVNGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G+ Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +T+GQR+GLG+ EP +VV D ++ +IV L + ++++W+ Sbjct: 236 MYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWV 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370 + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNG 351 Query: 371 DSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 EV----CLGGGIIE 361 >gi|50121369|ref|YP_050536.1| tRNA-specific 2-thiouridylase MnmA [Pectobacterium atrosepticum SCRI1043] gi|71658013|sp|Q6D4E9|MNMA_ERWCT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|49611895|emb|CAG75344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pectobacterium atrosepticum SCRI1043] Length = 368 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 122/379 (32%), Positives = 194/379 (51%), Gaps = 29/379 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + ++ C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYHVEGLFMKNWEEDDDTE---YCSAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R D + + R MD +DQSYFL+ + +Q+ FP+G++ Sbjct: 120 LGADYIATGHYVRRH-----DVDGKSRLLRGMDGNKDQSYFLYTLSHEQIAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI-LG 254 +K VR +A E+ L A K DS ICF+ + K+ D + R A G I+ ++ +G Sbjct: 175 EKPQVRKIAEELELATAKKKDSTGICFIGERKFTDFLARYLP--AQPGPILSVDDNKPMG 232 Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 +H G++ +T+GQR+GLG+ +P +VV D ++ + V L + + + Sbjct: 233 QHQGLMYHTLGQRKGLGIGGVKDGGEDPWYVVDKDVANNILYVAQGHEHPRLMSYGLIAQ 292 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365 +++W+ + +C VK R Q + V DD + V F++ V GQ+ Sbjct: 293 QLHWVD----RQPLTAELRCTVKTRYRQADISCTVTPLGDDRITVRFDEPFAAVTPGQSA 348 Query: 366 VFYTSDSNEARVLGGGIIS 384 VFY D LGGGII Sbjct: 349 VFYLDDV----CLGGGIIE 363 >gi|59712391|ref|YP_205167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio fischeri ES114] gi|71658019|sp|Q5E3W7|MNMA_VIBF1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|59480492|gb|AAW86279.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio fischeri ES114] Length = 374 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 117/382 (30%), Positives = 194/382 (50%), Gaps = 27/382 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A +D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L + Sbjct: 60 QAVCDKLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119 Query: 136 LGADVLATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 L AD +A GHY+R ++ + M R +D +DQSYFL+ + +Q+ FP+G Sbjct: 120 LDADFIAMGHYVRRTFPTAEEIANGIKPQMLRGLDSNKDQSYFLYTLSSEQVARSLFPVG 179 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR +A E GL A K DS ICF+ + K+ + + + A G+I G+++ Sbjct: 180 ELEKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGNIETPEGKVI 237 Query: 254 GRHNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRV--IVG-PRESLEVHRI 303 G+H G++ +T+GQR+GL + +P FV D + + + G L+ + Sbjct: 238 GQHQGLMYHTLGQRKGLHIGGTKGGGGNEDPWFVGEKDLKRNVLIAVQGKDHPLLKSQGL 297 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASG 362 +++W+ + C VK R Q +P + DD + V F++ ++ V G Sbjct: 298 LASQLHWVD----RTPIKAPLSCTVKTRYRQTDIPCTIIPVDDENIKVIFDEPQIAVTPG 353 Query: 363 QACVFYTSDSNEARVLGGGIIS 384 Q+ VFY + LGGGII Sbjct: 354 QSAVFYLDEV----CLGGGIIE 371 >gi|197336343|ref|YP_002156606.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio fischeri MJ11] gi|229487426|sp|B5FG83|MNMA_VIBFM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|197317833|gb|ACH67280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio fischeri MJ11] Length = 374 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 117/382 (30%), Positives = 194/382 (50%), Gaps = 27/382 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A +D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L + Sbjct: 60 QAVCDKLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119 Query: 136 LGADVLATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 L AD +A GHY+R ++ + M R +D +DQSYFL+ + +Q+ FP+G Sbjct: 120 LDADFIAMGHYVRRTFPTAEEIANGVKPQMLRGLDSNKDQSYFLYTLSSEQVARSLFPVG 179 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR +A E GL A K DS ICF+ + K+ + + + A G+I G+++ Sbjct: 180 ELEKPEVRRIAEEQGLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGNIETPEGKVI 237 Query: 254 GRHNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRV--IVG-PRESLEVHRI 303 G+H G++ +T+GQR+GL + +P FV D + + + G L+ + Sbjct: 238 GQHQGLMYHTLGQRKGLHIGGTKGGGGNEDPWFVGEKDLKRNVLIAVQGKDHPLLKSQGL 297 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASG 362 +++W+ + C VK R Q +P + DD + V F++ ++ V G Sbjct: 298 LASQLHWVD----RTPIKAPLSCTVKTRYRQTDIPCTIIPVDDENIKVIFDEPQIAVTPG 353 Query: 363 QACVFYTSDSNEARVLGGGIIS 384 Q+ VFY + LGGGII Sbjct: 354 QSAVFYLDEV----CLGGGIIE 371 >gi|39546313|ref|NP_460204.2| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167991976|ref|ZP_02573075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168264253|ref|ZP_02686226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|197263918|ref|ZP_03163992.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200391023|ref|ZP_03217634.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|24638322|sp|Q8ZPZ4|MNMA_SALTY RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|197242173|gb|EDY24793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199603468|gb|EDZ02014.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205329792|gb|EDZ16556.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205347303|gb|EDZ33934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|267993013|gb|ACY87898.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157775|emb|CBW17268.1| Probable tRNA [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912222|dbj|BAJ36196.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321223852|gb|EFX48915.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 368 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 125/381 (32%), Positives = 200/381 (52%), Gaps = 30/381 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + ++PK +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ Sbjct: 1 MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 56 ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115 Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 LGAD +ATGHY+R D + + R +D +DQSYFL+ +Q+ FP+ Sbjct: 116 AEDLGADYIATGHYVRRA-----DVNGKSRLLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR +A ++GL A K DS ICF+ + K+ D + R A G I+ ++G Sbjct: 171 GELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDE 228 Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304 +G H G++ +T+GQR+GLG+ +P +VV D ++ +IV L + Sbjct: 229 IGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGHEHPRLMSVGLI 288 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363 ++++W+ + +C VK R Q +P + NDD + V F++ V GQ Sbjct: 289 AQQLHWVD----REPFTGTLRCTVKTRYRQTDIPCTINALNDDRIEVIFDEPVAAVTPGQ 344 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY+ + LGGGII Sbjct: 345 SAVFYSGEV----CLGGGIIE 361 >gi|322833617|ref|YP_004213644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rahnella sp. Y9602] gi|321168818|gb|ADW74517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rahnella sp. Y9602] Length = 369 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 122/378 (32%), Positives = 192/378 (50%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDDEE---YCTAATDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + D + R +D +DQSYFL+ +Q+ FP+G++ Sbjct: 120 LGADYIATGHYVRRQ-----DINGVSHLLRGIDGNKDQSYFLYTLGHEQVAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E+ L A K DS ICF+ + K+ D + R A G I ++GQ++G+ Sbjct: 175 EKPEVRRIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGVIKSVDGQVMGQ 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ EP + V D ++ + V L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGQKDGSEEPWYTVEKDVENNILYVAQGHEHPRLMNVGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366 ++W+ + C VK R Q+ +P V DD + V F+ V GQ+ V Sbjct: 293 LHWVD----RKTLTGPLTCTVKTRYRQEDIPCVVTPLGDDRIEVRFDAPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGG+I Sbjct: 349 FYLGEV----CLGGGVIE 362 >gi|300768828|ref|ZP_07078722.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|300493561|gb|EFK28735.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus plantarum subsp. plantarum ATCC 14917] Length = 379 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 135/387 (34%), Positives = 194/387 (50%), Gaps = 26/387 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + RVVV MSGGVDSSVVA LLK+ GYDV+GV ++ ++ + G C A +D D + Sbjct: 10 SNTRVVVGMSGGVDSSVVALLLKQQGYDVVGVFMKNWDD---TDENGVCTATEDYKDVAK 66 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + +Y ++E+ + + V F Y G TP P V CN+ +KF L LGA Sbjct: 67 VADKIGIPYYSINFEKEYWDRVFTYFLDEYKKGRTPNPDVICNKEIKFKAFLDYAMDLGA 126 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R + D + R +D +DQ+YFL + L + FPLG+M K Sbjct: 127 DYIATGHYARLQH----DEDGTMHLLRGVDSNKDQTYFLSQLDSKTLQKVMFPLGEMVKP 182 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR LA GL A K DS ICF+ + + + + A G ++ +GQ+ G H G Sbjct: 183 DVRKLALNAGLATAKKKDSVGICFIGEKNFKEFLGHYLP--ATPGKMMTFDGQVKGEHAG 240 Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWL 311 ++ YTIGQRRGLG+ EP FVV D + + VG L + +++++ Sbjct: 241 LMYYTIGQRRGLGIGGDGEDNEPWFVVGKDLKKNILYVGKGYHNPHLYATHLKASDLHFV 300 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVFYT 369 D + + + F K R Q V V NDD V V F+ + GQA VFY Sbjct: 301 TD----EDLGNDFHVTAKFRYRQKDSGVTVHFNDDHTEVTVTFDDPVRAITPGQAVVFYN 356 Query: 370 SDSNEARVLGGGIISGSKRSDAVEESL 396 + LG G+I + + V + + Sbjct: 357 GE----ECLGSGMIDAAYNDERVLQYV 379 >gi|205822022|sp|A8H5M1|MNMA_SHEPA RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 371 Score = 493 bits (1269), Expect = e-137, Method: Composition-based stats. Identities = 128/380 (33%), Positives = 195/380 (51%), Gaps = 28/380 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A D+ DA+ V Sbjct: 10 GKKVIVGMSGGVDSSVSAYLLMKQGYQVEGLFMKNWEEDDTDE---YCAAADDLKDAQAV 66 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGA 138 CD + + + ++ + + V F + Y AG TP P + CN+ +KF L + L A Sbjct: 67 CDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDA 126 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +A GHY+R R D M R +D +DQSYFL+ +Q+ FP+G++ K Sbjct: 127 DYIAMGHYVRRR-----DIDGTSQMLRGVDGNKDQSYFLYTLGYEQVARSLFPVGELDKS 181 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+EMGL DK DS ICF+ + K+ D ++ A G+I G+++G H G Sbjct: 182 EVREIAKEMGLITHDKKDSTGICFIGERKFTDFLQTFLP--AQPGNIETSEGEVIGTHQG 239 Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 ++ +T+GQR+GLG+ +P +VV D + +IVG L + + +++W Sbjct: 240 LMYHTLGQRKGLGIGGLKNSNDDPWYVVEKDLVRNVLIVGQGGNHPRLMSNGLVANQLHW 299 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYT 369 + +G K VK R Q VP V + DD + V F++ V GQ+ VFY Sbjct: 300 VD----RKGPANGSKITVKTRYRQQDVPCSVTYDSDDVLRVIFDEPVAAVTPGQSAVFYD 355 Query: 370 SDSNEARVLGGGIISGSKRS 389 + LGGGII R Sbjct: 356 GEI----CLGGGIIDALIRD 371 >gi|229822980|ref|ZP_04449050.1| hypothetical protein GCWU000282_00272 [Catonella morbi ATCC 51271] gi|229787793|gb|EEP23907.1| hypothetical protein GCWU000282_00272 [Catonella morbi ATCC 51271] Length = 375 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 133/389 (34%), Positives = 198/389 (50%), Gaps = 24/389 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVV+ MSGGVDSSV A LLK GY+VIG+ ++ ++ + G C A +D D Sbjct: 2 STNGKRVVLGMSGGVDSSVAALLLKEQGYEVIGLFMKNWDD---TDENGHCTATEDYQDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V + I + +Y ++E+ + + V F Y AG TP P V CN+ VKF L +L Sbjct: 59 VKVAEKIGIPYYSVNFEKEYWDRVFEYFLREYRAGRTPNPDVMCNKEVKFKAFLDYAMEL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +A GHY RS D + R +D +DQ+YFL +Q QL FPLG ++ Sbjct: 119 GADYIAMGHYARSER----DENGVVHLLRGLDNNKDQTYFLSQLSQAQLQKALFPLGHLQ 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA E GL A K DS +CF+ + + + + G +V L+GQ+ G H Sbjct: 175 KSEVRALAEEAGLATAKKKDSTGVCFIGERNFNEFLSNYLPN--KPGKMVTLDGQVKGEH 232 Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 G++ YTIGQR+GLG+ EP FV+ D+ + + VG +L + E++ Sbjct: 233 MGLMYYTIGQRQGLGIGGGGTSNEPWFVIGKDQTTQTLYVGQGFHHPNLYSDYLTASEVS 292 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVF 367 + L + V + F+C K R Q + V V+ + D V F++ + GQA VF Sbjct: 293 FTAPNLSD--VPEEFRCTAKFRYRQQDIGVTVKLSQDKTQATVMFDEPVRAITPGQAVVF 350 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396 Y LGGG+I + + + + Sbjct: 351 YDG----QECLGGGLIDAAYKEGVQRQYV 375 >gi|268589250|ref|ZP_06123471.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Providencia rettgeri DSM 1131] gi|291315435|gb|EFE55888.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Providencia rettgeri DSM 1131] Length = 366 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 126/379 (33%), Positives = 201/379 (53%), Gaps = 28/379 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + ++ C A D+ DA Sbjct: 2 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDDTE---YCSAAADLADA 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 59 QAVCDKLGIELHTINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEFAAED 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R R D + + R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 119 LGADYIATGHYVRRR-----DIDGKSQLLRGLDGNKDQSYFLYTLSHEQVAKSLFPVGEL 173 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E+GL A K DS ICF+ + K+ D + R A G IV ++G+ +G+ Sbjct: 174 EKPEVRRIAEEIGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVTVDGETIGQ 231 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ EP +VV D ++ +IV L + ++ Sbjct: 232 HEGLMYHTLGQRKGLGIGGTKEGSEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQ 291 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366 ++W+ + + +C VK R Q +P + +DD + V F+ V GQ+ V Sbjct: 292 LHWVD----RKTMTEPLRCVVKTRYRQADIPCTITPLSDDRIEVAFDYPVAAVTPGQSAV 347 Query: 367 FYTSDSNEARVLGGGIISG 385 FY + LGGGII Sbjct: 348 FYIDEV----CLGGGIIEA 362 >gi|311279962|ref|YP_003942193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterobacter cloacae SCF1] gi|308749157|gb|ADO48909.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterobacter cloacae SCF1] Length = 369 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 123/378 (32%), Positives = 195/378 (51%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEE---YCTAAADLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 120 LGADYIATGHYVRRA-----DVNGKSQLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E+ L A K DS ICF+ + K+ D + R A G I+ ++G +G Sbjct: 175 EKPQVRKIAEELELITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDEIGE 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ +P +VV D ++ ++V L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNILVVAQGHDHPRLMSVGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366 ++W+ + V +C VK R Q +P V DD + V F++ V GQ+ V Sbjct: 293 LHWVD----REPVTGTLRCTVKTRYRQTDIPCTVTAQDDSRIEVRFDEPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 349 FYLGEV----CLGGGIIE 362 >gi|26107782|gb|AAN79981.1|AE016759_255 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli CFT073] Length = 383 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 128/394 (32%), Positives = 203/394 (51%), Gaps = 28/394 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ A + N + + +V+V MSGGVDSSV A LL++ GY V G+ ++ + Sbjct: 1 MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDG 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 61 EE---YCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILC 117 Query: 121 NRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L L AD +ATGHY+R DGK R + R +D +DQSYFL+ Sbjct: 118 NKEIKFKAFLEFAAEDLCADYIATGHYVRRAXV---DGKSR--LLRGLDSNKDQSYFLYT 172 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + R Sbjct: 173 LSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRKFLGRYLP-- 230 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294 A G I+ ++G +G H G++ +T+GQR+GLG+ EP +VV D ++ +IV Sbjct: 231 AQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQ 290 Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYV 350 L + ++++W+ + +C VK R Q +P V+ D D + V Sbjct: 291 GHEHPRLMSVGLIAQQLHWVD----REPFTGTMRCTVKTRYRQTDIPCTVKALDADRIEV 346 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 F++ V GQ+ VFY + LGGGII Sbjct: 347 IFDEPVAAVTPGQSAVFYNGEV----CLGGGIIE 376 >gi|90413208|ref|ZP_01221203.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Photobacterium profundum 3TCK] gi|90325760|gb|EAS42218.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Photobacterium profundum 3TCK] Length = 371 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 118/381 (30%), Positives = 196/381 (51%), Gaps = 28/381 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A +D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDNEE---YCSAAEDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 60 QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY R + + M R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 120 LEADYIAMGHYTRRSFPTAE--GEKPKMLRGVDGNKDQSYFLYTLSHEQIARSLFPVGEL 177 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILG 254 +K VR +A E L A K DS ICF+ + K+ + + + A G I + G+++G Sbjct: 178 EKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGKIETADEGKVIG 235 Query: 255 RHNGIINYTIGQRRGL-------GVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304 H G++ +T+GQR+GL G + + +VV D + +IVG L+ + + Sbjct: 236 EHQGLMYHTLGQRKGLHIGGQKGGNGLEDAWYVVDKDLKRNVLIVGQGKDHPRLKSNGLV 295 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQ 363 +++W+ + C VK R Q+ +P + DD + V F++ ++ V GQ Sbjct: 296 ASQLDWVD----RQPIRQPMTCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQ 351 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY+++ LGGGII Sbjct: 352 SAVFYSNEI----CLGGGIIE 368 >gi|226944910|ref|YP_002799983.1| tRNA-specific 2-thiouridylase MnmA [Azotobacter vinelandii DJ] gi|226719837|gb|ACO79008.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Azotobacter vinelandii DJ] Length = 372 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 128/388 (32%), Positives = 202/388 (52%), Gaps = 26/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 +P RV+V MSGGVDSSV A LL + GY V G+ ++ + ++ C A +D+ DA Sbjct: 3 DPAHTRVIVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWEEDDGTE---YCTAKEDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + VCD I + + ++ + + V F + Y AG TP P + CNR +KF L L Sbjct: 60 QAVCDRIGMRLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALSL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD++ATGHY+R R D + R + + +D +DQSYFL A +QL FP+G+++ Sbjct: 120 GADMIATGHYVRRR-----DAEDRTELLKGLDPNKDQSYFLHAVASEQLAKSLFPVGELE 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K +VR +A GL A K DS ICF+ + ++ D +K+ A G I G+++G+H Sbjct: 175 KPAVRAIAELHGLATARKKDSTGICFIGERRFGDFLKQYLP--ARPGPIETTEGKVIGQH 232 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308 +G++ +TIGQR+GLG+ +P +V+ D + +IVG L ++ E+ Sbjct: 233 HGLMYHTIGQRQGLGIGGMKNATEDPWYVLAKDLTRNVLIVGQGNQHPWLFSRALHTSEM 292 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 W+ F + K+R Q +++ D G V F++ + V GQ+ V Y Sbjct: 293 FWVNPPDFPLP----RRLAAKVRYRQGDQTCTLEKTDQGFRVLFDEPQRAVTPGQSVVLY 348 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGGG+I ++ +E Sbjct: 349 DGDV----CLGGGVIETAEPWKREDEQP 372 >gi|322412887|gb|EFY03795.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 373 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 134/381 (35%), Positives = 192/381 (50%), Gaps = 25/381 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + + RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 3 DNSNTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQVKR----DEDGVVHMLRGADNGKDQTYFLSQLSQKQLQKTLFPLGHLQ 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H Sbjct: 176 KPEVRQIAERAGLATAKKKDSTGICFIGEKNFKTFLSQYLP--AQKGRMMTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ +P FVV D + + + VG ESL + + Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHESLMSTSLDASIV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E KC K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTREVPEE----FTLKCTAKFRYRQPDSKVTVHVKGDKAEVVFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRS 389 + LGGG+I + R Sbjct: 350 DGE----ECLGGGMIDMAYRD 366 >gi|221134862|ref|ZP_03561165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Glaciecola sp. HTCC2999] Length = 372 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 127/382 (33%), Positives = 195/382 (51%), Gaps = 28/382 (7%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P D +V+V MSGGVDSSV A LLK+ G+ V GV ++ + + C A +D+ DA Sbjct: 9 PADTKVIVGMSGGVDSSVSAYLLKQQGFQVEGVFMKNWEEDDNDE---YCAAAEDLADAH 65 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQL 136 V D + ++ + ++ + + V F + Y AG TP P + CN+ +KF L L Sbjct: 66 AVADKLGITLHSINFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEYAAEDL 125 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY+ + M R D +DQSYFL+ + + + FP+G ++ Sbjct: 126 GADYIATGHYVSRAKNGD-----KWEMLRGFDQNKDQSYFLYTLSHEHIAKTLFPIGHLE 180 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K +VR++A GL DK DS ICF+ + K+ D + + A GDI G+ +G H Sbjct: 181 KPTVREIAEAQGLVTHDKKDSTGICFIGERKFTDFLSQYLP--AQPGDIYTFEGEKIGEH 238 Query: 257 NGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ +T+GQR+GL + EP +VV D ++R+IVG L + + +++ Sbjct: 239 QGLMYHTLGQRKGLLIGGTRDHGDEPWYVVDKDMTNNRLIVGQGANHPRLYSNGLIAKQL 298 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVF 367 +W+ A+ + + VK R Q + V +DD V V F+ + V GQ+ VF Sbjct: 299 DWVS----RTALTEPTRMTVKTRYRQADIDCIVTPIDDDSVEVIFDTPQKAVTPGQSAVF 354 Query: 368 YTSDSNEARVLGGGIISGSKRS 389 Y LGGGII RS Sbjct: 355 YQG----PVCLGGGIIESYIRS 372 >gi|167464004|ref|ZP_02329093.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322382960|ref|ZP_08056792.1| tRNA-specific 2-thiouridylase MnmA-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153080|gb|EFX45538.1| tRNA-specific 2-thiouridylase MnmA-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 364 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 131/372 (35%), Positives = 190/372 (51%), Gaps = 25/372 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + R+++ MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D RRV Sbjct: 4 NKRIILGMSGGVDSSVSALLLKEQGYDVIGVFMKNWDD---TVEFGHCTAEEDAEDVRRV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + + Y ++E+++ V F + Y G TP P V CNR +KF + L LG D Sbjct: 61 CDQVGIPFYTVNFEKQYMEKVFSYFLNEYKRGRTPNPDVMCNREIKFGEFLQKGLDLGGD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R G+ ++ R D +DQ+YFL A Q QL FP+G + K Sbjct: 121 YIATGHYARVEERNGE-----YVLLRGNDPNKDQTYFLHALNQFQLSKAMFPIGHLPKPE 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA E GL A K DS +CF+ + + + + A G++ L G++ GRH+G+ Sbjct: 176 VRKLAEEAGLATAKKKDSTGVCFIGERNFKEFLSNYLP--AKPGEMRTLEGEVKGRHDGL 233 Query: 260 INYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 + YT+GQR+ G GEP FV D ++ + V SL + ++NW+ Sbjct: 234 MYYTLGQRQGLGIGGSGTGEPWFVADKDLQNNILYVVQGEKHPSLYSTGLSATDVNWISP 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDS 372 E ++C K R Q V + D+ V F++ + V GQ+ VFY + Sbjct: 294 VKPEGQ----YRCTAKFRYRQPDQGVTLTMGADNTCEVIFDEPQKAVTPGQSVVFYDGEV 349 Query: 373 NEARVLGGGIIS 384 LGGGII Sbjct: 350 ----CLGGGIID 357 >gi|205822138|sp|Q21AM9|MNMA_RHOPB RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 400 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 212/395 (53%), Positives = 279/395 (70%), Gaps = 4/395 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL+ P+D R+VVAMSGGVDSS AALLK +GYDV+G+TLQLY+ A RKG+CC Sbjct: 2 LNSLDLEGRPQDTRIVVAMSGGVDSSTTAALLKSEGYDVVGITLQLYDHGAAIHRKGACC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V D I + HYV DYE RF+ +VI FA+SYA GETP+PC++CNR++KF D Sbjct: 62 AGQDIHDARAVADRIGIPHYVLDYESRFQESVIDSFAASYATGETPVPCIECNRSIKFRD 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LLS R+LGA LATGHY+ SR R + D +RDQSYFLFATT+ QL L Sbjct: 122 LLSTARELGASALATGHYVSSRRLAD----GSRALVCASDADRDQSYFLFATTRDQLDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K R+LAR+ GL +ADK DSQDICFV G+Y DVV R+ G+IV L Sbjct: 178 RFPLGDMTKPQTRELARKFGLSVADKHDSQDICFVPTGRYTDVVGRLKPNAMEPGEIVDL 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG+H GI+++T+GQRRGLG+A PL+V+ L+ ++ RV+VGPRE+L + RI LR++ Sbjct: 238 DGRVLGKHQGIVHFTVGQRRGLGIASTAPLYVLRLEPSTRRVVVGPREALRMDRIVLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GD + AV DG + FV++RS++ P P +++ D G V+ E GV+ GQACVFY Sbjct: 298 NWIGDSSLDRAVGDGLELFVRVRSTRRPQPAWLRAQDGGYQVELVAGEDGVSPGQACVFY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403 + + +ARVLGGG I + A + +L Sbjct: 358 DAPAGQARVLGGGFIKSATPRAAGKSALRGAPASR 392 >gi|28378785|ref|NP_785677.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus plantarum WCFS1] gi|254556990|ref|YP_003063407.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus plantarum JDM1] gi|308180978|ref|YP_003925106.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus plantarum subsp. plantarum ST-III] gi|38258513|sp|Q88V96|MNMA_LACPL RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|28271622|emb|CAD64528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus plantarum WCFS1] gi|254045917|gb|ACT62710.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus plantarum JDM1] gi|308046469|gb|ADN99012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus plantarum subsp. plantarum ST-III] Length = 374 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 135/387 (34%), Positives = 194/387 (50%), Gaps = 26/387 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + RVVV MSGGVDSSVVA LLK+ GYDV+GV ++ ++ + G C A +D D + Sbjct: 5 SNTRVVVGMSGGVDSSVVALLLKQQGYDVVGVFMKNWDD---TDENGVCTATEDYKDVAK 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + +Y ++E+ + + V F Y G TP P V CN+ +KF L LGA Sbjct: 62 VADKIGIPYYSINFEKEYWDRVFTYFLDEYKKGRTPNPDVICNKEIKFKAFLDYAMDLGA 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R + D + R +D +DQ+YFL + L + FPLG+M K Sbjct: 122 DYIATGHYARLQH----DEDGTMHLLRGVDSNKDQTYFLSQLDSKTLQKVMFPLGEMVKP 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR LA GL A K DS ICF+ + + + + A G ++ +GQ+ G H G Sbjct: 178 DVRKLALNAGLATAKKKDSVGICFIGEKNFKEFLGHYLP--ATPGKMMTFDGQVKGEHAG 235 Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWL 311 ++ YTIGQRRGLG+ EP FVV D + + VG L + +++++ Sbjct: 236 LMYYTIGQRRGLGIGGDGEDNEPWFVVGKDLKKNILYVGKGYHNPHLYATHLKASDLHFV 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVFYT 369 D + + + F K R Q V V NDD V V F+ + GQA VFY Sbjct: 296 TD----EDLGNDFHVTAKFRYRQKDSGVTVHFNDDHTEVTVTFDDPVRAITPGQAVVFYN 351 Query: 370 SDSNEARVLGGGIISGSKRSDAVEESL 396 + LG G+I + + V + + Sbjct: 352 GE----ECLGSGMIDAAYNDERVLQYV 374 >gi|116334036|ref|YP_795563.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, PP-loop ATPase [Lactobacillus brevis ATCC 367] gi|122269280|sp|Q03QJ0|MNMA_LACBA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|116099383|gb|ABJ64532.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, PP-loop ATPase [Lactobacillus brevis ATCC 367] Length = 375 Score = 492 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 136/389 (34%), Positives = 197/389 (50%), Gaps = 27/389 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 ++ RVVV MSGGVDSSVVA LK+ GYDVIGV ++ ++ + G C A +D D Sbjct: 2 QDNSQTRVVVGMSGGVDSSVVALRLKQQGYDVIGVFMKNWDD---TDENGVCTATEDYKD 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 +V I + +Y ++E+ + + V F Y G TP P V CN+ +KF L + Sbjct: 59 VAKVAAKIGIPYYSVNFEKEYWDRVFTYFLDEYKKGRTPNPDVICNKEIKFKAFLDYALE 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY + + D + R +D +DQ+YFL + +QL + FP+GD+ Sbjct: 119 LGADYIATGHYAQ----LTRDEAGHAHLMRAVDQNKDQTYFLSQLSTEQLDRVMFPIGDL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILG 254 K VR++A+E GL A+K DS ICF+ + G + D +K A GD++ ++G+I G Sbjct: 175 VKPQVREIAKEAGLATAEKKDSMGICFIGEKGHFKDFLKTYLP--AKAGDMMTVDGEIKG 232 Query: 255 RHNGIINYTIGQRR----GLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLRE 307 H G++ YTIGQR+ G EP FV+ D + + VG L + + Sbjct: 233 HHAGLMYYTIGQRKGLGIGGDGIDNEPWFVIGKDLQKNILYVGKGYHNPHLYATHLSASD 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQAC 365 I+W+ F C K R Q V V NDDG V V+F+ + GQA Sbjct: 293 IHWVNTIDR----GSDFHCTAKFRYRQKDTGVTVHLNDDGQQVTVEFDDPARAITPGQAV 348 Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEE 394 VFY D LG II + + + Sbjct: 349 VFYNGD----ECLGSAIIDAAYNQERELQ 373 >gi|188534099|ref|YP_001907896.1| tRNA-specific 2-thiouridylase MnmA [Erwinia tasmaniensis Et1/99] gi|188029141|emb|CAO97013.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erwinia tasmaniensis Et1/99] Length = 369 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 120/378 (31%), Positives = 196/378 (51%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A +D+ DA Sbjct: 2 SNSQKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAEDLADA 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 59 QAVCDKLGIYLHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + D + + R +D +DQSYFL+ +Q+ FP+G++ Sbjct: 119 LGADYIATGHYVRRQ-----DVDGKSRLLRGLDGNKDQSYFLYTLGHEQIAQSLFPVGEL 173 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K VR +A ++ L A K DS ICF+ + K+ + + R A G I+ ++G +G+ Sbjct: 174 AKPEVRRIAEQLELVTAKKKDSTGICFIGERKFTEFLSRYLP--AQPGPILSVDGDNVGQ 231 Query: 256 HNGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ + P +VV D ++ ++V L + ++ Sbjct: 232 HQGLMYHTLGQRKGLGIGGRKEANDDPWYVVDKDVANNVLVVAQGHEHPRLMSTGLIAQQ 291 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366 ++W+ D++ +C VK R Q +P V D + + V F+ V GQ+ V Sbjct: 292 LHWVD----RDSLTTPLRCTVKTRYRQQDIPCTVTPVDAERIEVRFDFPVAAVTPGQSAV 347 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 348 FYLDEV----CLGGGIIE 361 >gi|24380473|ref|NP_722428.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus mutans UA159] gi|30173426|sp|Q8DRS4|MNMA_STRMU RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|24378503|gb|AAN59734.1|AE015035_3 putative tRNA [Streptococcus mutans UA159] Length = 373 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 132/388 (34%), Positives = 200/388 (51%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R D +DQ+YFL +Q+QL + FPLG ++ Sbjct: 120 GADYVATGHYAQ----VSRDADGTVHMLRGADNNKDQTYFLSQLSQEQLQKVMFPLGHLQ 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A + GL A K DS ICF+ + + + + A +G ++ ++G+ +G H Sbjct: 176 KPRVREIAEKAGLVTAKKKDSTGICFIGEKNFKEFLSSYLP--AQKGRMMTIDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 NG++ YTIGQR G+G+ P FVV D + + + VG ++L + ++ Sbjct: 234 NGLMYYTIGQRGGMGIGGQKGGDNAPWFVVGKDLSQNILYVGQGFYHDALMSTSLTASQV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + C K R Q V V+ N D V F++ + + GQA VFY Sbjct: 294 HFTQNM----PDKFTLNCTAKFRYRQPDSKVDVKVNGDKAEVIFDEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGGG+I + + + + + + Sbjct: 350 DGD----ECLGGGLIDNAYQEEKICQYI 373 >gi|38703944|ref|NP_309632.2| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str. Sakai] gi|161367616|ref|NP_287347.2| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 EDL933] gi|168749736|ref|ZP_02774758.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4113] gi|168756472|ref|ZP_02781479.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4401] gi|168762550|ref|ZP_02787557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4501] gi|168771001|ref|ZP_02796008.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4486] gi|168776054|ref|ZP_02801061.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4196] gi|168782470|ref|ZP_02807477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4076] gi|168787608|ref|ZP_02812615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC869] gi|168800455|ref|ZP_02825462.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC508] gi|195938765|ref|ZP_03084147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4024] gi|208808537|ref|ZP_03250874.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4206] gi|208814775|ref|ZP_03255954.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4045] gi|208822542|ref|ZP_03262861.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4042] gi|209397379|ref|YP_002270050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4115] gi|217328487|ref|ZP_03444569.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. TW14588] gi|254792593|ref|YP_003077430.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str. TW14359] gi|261227234|ref|ZP_05941515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. FRIK2000] gi|261258759|ref|ZP_05951292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. FRIK966] gi|291282168|ref|YP_003498986.1| putative tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Escherichia coli O55:H7 str. CB9615] gi|24638314|sp|Q8X735|MNMA_ECO57 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|187768490|gb|EDU32334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4196] gi|188016000|gb|EDU54122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4113] gi|189000055|gb|EDU69041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4076] gi|189356337|gb|EDU74756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4401] gi|189360141|gb|EDU78560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4486] gi|189367117|gb|EDU85533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4501] gi|189372405|gb|EDU90821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC869] gi|189377259|gb|EDU95675.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC508] gi|208728338|gb|EDZ77939.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4206] gi|208731423|gb|EDZ80111.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4045] gi|208738027|gb|EDZ85710.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4042] gi|209158779|gb|ACI36212.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. EC4115] gi|217318914|gb|EEC27340.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. TW14588] gi|254591993|gb|ACT71354.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O157:H7 str. TW14359] gi|290762041|gb|ADD56002.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Escherichia coli O55:H7 str. CB9615] gi|320187860|gb|EFW62530.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Escherichia coli O157:H7 str. EC1212] gi|320637601|gb|EFX07401.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str. G5101] gi|320643161|gb|EFX12362.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H- str. 493-89] gi|320648098|gb|EFX16774.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H- str. H 2687] gi|320653931|gb|EFX22005.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659411|gb|EFX26980.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O55:H7 str. USDA 5905] gi|320664548|gb|EFX31699.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str. LSU-61] gi|326339412|gb|EGD63224.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O157:H7 str. 1044] gi|326341465|gb|EGD65256.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Escherichia coli O157:H7 str. 1125] Length = 368 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VC Sbjct: 6 KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L LGAD Sbjct: 63 DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G+ Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +T+GQR+GLG+ EP +VV D ++ +IV L + ++++W+ Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWV 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370 + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNG 351 Query: 371 DSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 EV----CLGGGIIE 361 >gi|313889493|ref|ZP_07823139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pseudoporcinus SPIN 20026] gi|313122105|gb|EFR45198.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pseudoporcinus SPIN 20026] Length = 373 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 136/388 (35%), Positives = 197/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 3 DKSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYALNL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D R M R +D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQ----VERDSDGRVHMLRGVDNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A L A K DS ICF+ + + + + A +G + ++G+ +G H Sbjct: 176 KSQVREIAARADLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMKTVDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ +P FVV D + + + VG ESL + + Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNVLYVGQGFYHESLMSTSLDASMV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ D E +C K R Q V V+ + D V F + + + GQA VFY Sbjct: 294 HFTHDMPKE----FTLECTAKFRYRQPDCKVSVKVSGDKAKVLFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGGII + + V + + Sbjct: 350 DN----QECLGGGIIDQAYKDGLVCQYI 373 >gi|114793688|pdb|2DER|A Chain A, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And Trna-Glu In The Initial Trna Binding State gi|114793689|pdb|2DER|B Chain B, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And Trna-Glu In The Initial Trna Binding State gi|114793692|pdb|2DET|A Chain A, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And Trna-Glu In The Pre-Reaction State gi|114793694|pdb|2DEU|A Chain A, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And Trna-Glu In The Adenylated Intermediate State gi|114793695|pdb|2DEU|B Chain B, Cocrystal Structure Of An Rna Sulfuration Enzyme Mnma And Trna-Glu In The Adenylated Intermediate State Length = 380 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 122/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VC Sbjct: 18 KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 74 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L LGAD Sbjct: 75 DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 134 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 135 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 189 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G+ Sbjct: 190 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 247 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +T+GQR+GLG+ EP +VV D ++ ++V L + ++++W+ Sbjct: 248 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWV 307 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370 + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 308 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNG 363 Query: 371 DSNEARVLGGGIIS 384 + LGGGII Sbjct: 364 EV----CLGGGIIE 373 >gi|16760109|ref|NP_455726.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29142120|ref|NP_805462.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413780|ref|YP_150855.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161614531|ref|YP_001588496.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168233116|ref|ZP_02658174.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168244308|ref|ZP_02669240.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168467196|ref|ZP_02701038.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168822341|ref|ZP_02834341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444280|ref|YP_002040490.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449928|ref|YP_002045236.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194472097|ref|ZP_03078081.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197249278|ref|YP_002146807.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197362703|ref|YP_002142340.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198245672|ref|YP_002215901.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|204930753|ref|ZP_03221626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353032|ref|YP_002226833.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857259|ref|YP_002243910.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213428090|ref|ZP_03360840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580464|ref|ZP_03362290.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213612639|ref|ZP_03370465.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213648222|ref|ZP_03378275.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|224584258|ref|YP_002638056.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|24638320|sp|Q8Z7G9|MNMA_SALTI RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71658018|sp|Q5PMJ4|MNMA_SALPA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205816911|sp|A9N4K8|MNMA_SALPB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|25298380|pir||AC0647 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502403|emb|CAD08358.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi] gi|29137749|gb|AAO69311.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56128037|gb|AAV77543.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|161363895|gb|ABX67663.1| hypothetical protein SPAB_02280 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402943|gb|ACF63165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194408232|gb|ACF68451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458461|gb|EDX47300.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195630429|gb|EDX49055.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197094180|emb|CAR59684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197212981|gb|ACH50378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197940188|gb|ACH77521.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|204320212|gb|EDZ05416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205272813|emb|CAR37739.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205332653|gb|EDZ19417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205336786|gb|EDZ23550.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341217|gb|EDZ27981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206709062|emb|CAR33395.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468785|gb|ACN46615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322616610|gb|EFY13519.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619875|gb|EFY16749.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622443|gb|EFY19288.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629439|gb|EFY26216.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632935|gb|EFY29678.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636820|gb|EFY33523.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641380|gb|EFY38019.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645145|gb|EFY41674.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652308|gb|EFY48664.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655660|gb|EFY51962.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660965|gb|EFY57195.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665449|gb|EFY61637.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667574|gb|EFY63735.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673632|gb|EFY69734.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677558|gb|EFY73622.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322679777|gb|EFY75816.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687250|gb|EFY83222.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193058|gb|EFZ78280.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199445|gb|EFZ84538.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203633|gb|EFZ88655.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208826|gb|EFZ93764.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323217800|gb|EGA02515.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323218889|gb|EGA03400.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226637|gb|EGA10837.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229603|gb|EGA13726.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323232828|gb|EGA16924.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240136|gb|EGA24180.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242877|gb|EGA26898.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246793|gb|EGA30763.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254307|gb|EGA38124.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255573|gb|EGA39332.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259407|gb|EGA43043.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267003|gb|EGA50488.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272107|gb|EGA55521.1| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 368 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 124/381 (32%), Positives = 200/381 (52%), Gaps = 30/381 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + ++PK +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ Sbjct: 1 MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 56 ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115 Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 LGAD +ATGHY+R D + + R +D +DQSYFL+ +Q+ FP+ Sbjct: 116 AEDLGADYIATGHYVRRA-----DVNGKSRLLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR +A ++GL A K DS ICF+ + K+ D + R A G I+ ++G Sbjct: 171 GELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDE 228 Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304 +G H G++ +T+GQR+GLG+ +P +VV D ++ +IV L + Sbjct: 229 IGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGHEHPRLMSVGLI 288 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363 ++++W+ + +C VK R Q +P + +DD + V F++ V GQ Sbjct: 289 AQQLHWVD----REPFTGTLRCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQ 344 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY+ + LGGGII Sbjct: 345 SAVFYSGEV----CLGGGIIE 361 >gi|205822469|sp|A6T7K3|MNMA_KLEP7 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 368 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 122/376 (32%), Positives = 195/376 (51%), Gaps = 28/376 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A D+ DA+ Sbjct: 4 SQKKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEE---YCTAAADLADAQA 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLG 137 VCD + + + ++ + + V F Y AG TP P + CN+ +KF L LG Sbjct: 61 VCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLG 120 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 121 ADYIATGHYVRRA-----DVDGKSQLLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGELEK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR +A E+ L A K DS ICF+ + K+ D + R A G I+ ++G+ +G H Sbjct: 176 PQVRKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKILTVDGEEIGTHQ 233 Query: 258 GIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G++ +T+GQR+GLG+ +P +VV D ++ +IV L + ++++ Sbjct: 234 GLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGHDHPRLMSVGLIAQQLH 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + + +C VK R Q +P V ++D + V F++ V GQ+ VFY Sbjct: 294 WVN----REPLQGTLRCTVKTRYRQTDIPCTVTALDEDRIEVRFDEPVAAVTPGQSAVFY 349 Query: 369 TSDSNEARVLGGGIIS 384 + LGGGII Sbjct: 350 LGEV----CLGGGIIE 361 >gi|326791915|ref|YP_004309736.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium lentocellum DSM 5427] gi|326542679|gb|ADZ84538.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium lentocellum DSM 5427] Length = 360 Score = 491 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 140/365 (38%), Positives = 210/365 (57%), Gaps = 12/365 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GY+VIG+T+Q++ G CC V DARRV Sbjct: 6 KKKVVVGMSGGVDSSVTAYLLKEQGYEVIGMTMQIWQEGAPEDSDGGCCGLSAVDDARRV 65 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C +++ HYV ++ F+ VI F Y TP PC+ CNR VK+ +L Q+GAD Sbjct: 66 CQKLDIPHYVVNFRSDFKKHVIDYFLDEYQNARTPNPCIACNRYVKWESMLQKALQIGAD 125 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + D+ R + + L +DQ+Y L+ TQ QL PLGD K+ Sbjct: 126 YIATGHYAR---VIRDEVTGRYSLKQSKTLAKDQTYALYNLTQHQLAHTLMPLGDYTKDE 182 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A+E+GL +A K DSQ+ICFV Y ++ + G+ V+ +G++LG+H GI Sbjct: 183 VRAIAKEIGLAVATKPDSQEICFVPDNNYAKYIEEETGKKPVVGNFVNKDGKVLGKHKGI 242 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 I+YTIGQR+GLG+++G+P FV +++ ++ V++G E L + ++N++ E Sbjct: 243 IHYTIGQRKGLGLSLGKPGFVQRINQKTNEVVIGDNEDLFDTTVTANQVNFMPFEHLE-- 300 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 C KIR +Q P P ++ ++D + F++ + + GQA V Y D +++ Sbjct: 301 --GEMHCLGKIRYNQAPQPCTIKMIDEDTIQCIFDEKQRAITPGQALVLYDGD----KLI 354 Query: 379 GGGII 383 GGG I Sbjct: 355 GGGTI 359 >gi|162139594|ref|YP_216172.2| tRNA-specific 2-thiouridylase MnmA [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|71658017|sp|Q57QC0|MNMA_SALCH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|322714225|gb|EFZ05796.1| tRNA-specific 2-thiouridylase mnmA [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 368 Score = 491 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 124/381 (32%), Positives = 200/381 (52%), Gaps = 30/381 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + ++PK +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ Sbjct: 1 MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 56 ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115 Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 LGAD +ATGHY+R D + + R +D +DQSYFL+ +Q+ FP+ Sbjct: 116 AEDLGADYIATGHYVRRA-----DVNGKSRLLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR +A ++GL A K DS ICF+ + K+ D + R A G I+ ++G Sbjct: 171 GELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDE 228 Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304 +G H G++ +T+GQR+GLG+ +P +VV D ++ +IV L + Sbjct: 229 IGEHQGLMYHTLGQRKGLGIGGTKDGTEDPWYVVDKDVENNVLIVAQGHEHPRLMSVGLI 288 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363 ++++W+ + +C VK R Q +P + +DD + V F++ V GQ Sbjct: 289 AQQLHWVD----REPFTGTLRCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQ 344 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY+ + LGGGII Sbjct: 345 SAVFYSGEV----CLGGGIIE 361 >gi|170682526|ref|YP_001744044.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli SMS-3-5] gi|218549144|ref|YP_002382935.1| tRNA-specific 2-thiouridylase MnmA [Escherichia fergusonii ATCC 35469] gi|205816880|sp|B1LI10|MNMA_ECOSM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|170520244|gb|ACB18422.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli SMS-3-5] gi|218356685|emb|CAQ89312.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia fergusonii ATCC 35469] gi|323967072|gb|EGB62498.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli M863] gi|323976496|gb|EGB71584.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli TW10509] gi|324113924|gb|EGC07898.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia fergusonii B253] gi|325497565|gb|EGC95424.1| orf, hypothetical protein [Escherichia fergusonii ECD227] gi|327253837|gb|EGE65466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli STEC_7v] Length = 368 Score = 491 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VC Sbjct: 6 KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L LGAD Sbjct: 63 DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G+ Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +T+GQR+GLG+ EP +VV D ++ +IV L + ++++W+ Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWV 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370 + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNG 351 Query: 371 DSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 EV----CLGGGIIE 361 >gi|114563431|ref|YP_750944.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella frigidimarina NCIMB 400] gi|122299537|sp|Q081F9|MNMA_SHEFN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|114334724|gb|ABI72106.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella frigidimarina NCIMB 400] Length = 372 Score = 491 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 124/385 (32%), Positives = 196/385 (50%), Gaps = 27/385 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 L+ +V+V MSGGVDSSV A LL + G++V G+ ++ + + C A D+ Sbjct: 4 LNPTSNGKKVIVGMSGGVDSSVSAYLLMQQGFEVEGLFMKNWEEDDTDE---YCAAADDL 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 61 KDAQAVCDKLGIKMHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFA 120 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 L AD +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+ Sbjct: 121 DDILDADYIAMGHYVRRR----DNSDGSVEMLRGVDGNKDQSYFLYTLSHEQVARSLFPV 176 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR++A+++GL DK DS ICF+ + K+ D + A GDI G++ Sbjct: 177 GELEKHQVREIAQKLGLITHDKKDSTGICFIGERKFTDFLATYLP--AQPGDIETSEGEV 234 Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIY 304 +G H G++ +T+GQR+GLG+ +P +VV D + +IV G L + Sbjct: 235 IGTHQGLMYHTLGQRKGLGIGGLKNSNEDPWYVVEKDLVRNVLIVAQGGNHPRLMSTGMT 294 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQ 363 + +++W+ + VK R Q V + +D D + V F++ V GQ Sbjct: 295 VNQLHWVD----RTGPANNSTITVKTRYRQRDVGCTLTYDDADNITVMFDEPVAAVTPGQ 350 Query: 364 ACVFYTSDSNEARVLGGGIISGSKR 388 + VFY D LGGGII R Sbjct: 351 SAVFYDGDI----CLGGGIIDTLIR 371 >gi|109898694|ref|YP_661949.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudoalteromonas atlantica T6c] gi|122971887|sp|Q15T93|MNMA_PSEA6 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|109700975|gb|ABG40895.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudoalteromonas atlantica T6c] Length = 396 Score = 491 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 128/391 (32%), Positives = 198/391 (50%), Gaps = 29/391 (7%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 L++ +L N +V+V MSGGVDSSV A +L + GY V G+ ++ + + C Sbjct: 25 SLSATELASN-SQKKVIVGMSGGVDSSVSAYILLQQGYQVEGLFMKNWEEDDNDE---YC 80 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 A D+ DA+ V D + + + ++ + + V F Y +G TP P + CN+ +KF Sbjct: 81 AAADDLKDAQAVADKLGIVLHQINFAAEYWDNVFEYFLEEYKSGRTPNPDIMCNKEIKFK 140 Query: 128 DLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L +L AD +ATGHY+R R G M R MD +DQSYFL+ +Q + Sbjct: 141 AFLEFAAEELEADYIATGHYVRRREVDG-----HWQMLRGMDDNKDQSYFLYTLGEQHVG 195 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 FP+GD++K VR++A+E GL DK DS ICF+ + K+ D + + A G I Sbjct: 196 QTLFPIGDIEKPQVREIAQEQGLITHDKKDSTGICFIGERKFTDFLSQYLP--AQPGVIE 253 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298 GQ +G+H G++ +T+GQR+GL + +P +VV D + +IVG L Sbjct: 254 TPEGQEIGQHQGLMYHTLGQRKGLMIGGMKEFGDDPWYVVDKDMARNVLIVGQGADHPRL 313 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEV 357 + + +++W+ KC VK R Q+ + + DG V V F++ + Sbjct: 314 YSNGLIANQLHWVD----RTGPTSPMKCSVKTRYRQEDIACTLTPEPDGNVRVMFDEPQK 369 Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGSKR 388 V GQ+ VFY ++ LGGGII R Sbjct: 370 AVTPGQSAVFYLNEV----CLGGGIIESYIR 396 >gi|148263558|ref|YP_001230264.1| tRNA-specific 2-thiouridylase MnmA [Geobacter uraniireducens Rf4] gi|205816712|sp|A5GE36|MNMA_GEOUR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|146397058|gb|ABQ25691.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacter uraniireducens Rf4] Length = 375 Score = 491 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 158/384 (41%), Positives = 221/384 (57%), Gaps = 18/384 (4%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS----CCA 69 + KN K RVV+AMSGGVDSSV AALLK +G++VIG+++Q+++ + + +G CC+ Sbjct: 1 MVKNNKRKRVVIAMSGGVDSSVAAALLKEEGHEVIGISMQVWDYTRFTAEEGEKFDTCCS 60 Query: 70 GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 D++DARRV + + + YV ++EE F+N VI F + Y G TP PCV CN+ +KF L Sbjct: 61 LDDIHDARRVAEQLEIPFYVVNFEEEFQNLVIDDFVNEYLLGRTPNPCVRCNQWIKFELL 120 Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 L R LGAD++ATGHY R+ D R + + +D +DQSYFLF TQ+QL Sbjct: 121 LKKARGLGADMIATGHYARTEQ----DADGRYRLMKGVDPAKDQSYFLFTLTQEQLAMTL 176 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 FPLG M K+ VR LA GL +A+K +SQ+ICFV Y ++ L G+IV Sbjct: 177 FPLGGMTKQEVRALAAGYGLRVAEKGESQEICFVPDNDYVRFIEEERGKQLLSGNIVDRK 236 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 G++LG H+G YT+GQR+GLG+A EPL+V+ +D V VGPR++L + IN Sbjct: 237 GKVLGVHDGTYRYTVGQRKGLGIAHPEPLYVLGVDAARKEVTVGPRDALYSDGLIATAIN 296 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + KIR P+P + D+ V F + E V GQA VFY Sbjct: 297 WIA-----PTPETAIEASCKIRYRHHPIPCRILPLADNRAEVRFTEREKSVTPGQAVVFY 351 Query: 369 TSDSNEARVLGGGIISGSKRSDAV 392 D+ VLGGG I + + Sbjct: 352 DGDT----VLGGGWIEHAVNTKTA 371 >gi|86751223|ref|YP_487719.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris HaA2] gi|86574251|gb|ABD08808.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodopseudomonas palustris HaA2] Length = 402 Score = 491 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 216/389 (55%), Positives = 274/389 (70%), Gaps = 4/389 (1%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 T LNSLDL P+D RVVVAMSGGVDSS AALLK GYDV+G+TLQLY+ A+ RKG+ Sbjct: 4 TMLNSLDLAGRPQDTRVVVAMSGGVDSSATAALLKSQGYDVVGITLQLYDHGAATHRKGA 63 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 CCAGQD++DAR V + I + HYV DYE RFR +VI FA SYA GETP+PC++CNR+VKF Sbjct: 64 CCAGQDIHDARDVAERIGIPHYVLDYESRFRESVIDSFADSYALGETPVPCIECNRSVKF 123 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 DLL+ R+LGA LATGHY+ SR R + D +RDQSYFLFATT++QL Sbjct: 124 RDLLATARELGASALATGHYVSSRRLAD----GSRALICAADRDRDQSYFLFATTREQLD 179 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 LRFPLGDM K RDLAR+ GL +ADK DSQDICFV G+Y DVV+R+ G+IV Sbjct: 180 FLRFPLGDMTKPQTRDLARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGEIV 239 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 LNG++LG H GI+++T+GQRRGLG+A PL+V+ LD RV+VGPRE+L + RI LR Sbjct: 240 DLNGRVLGSHPGIVHFTVGQRRGLGIASRAPLYVLRLDAARRRVVVGPREALRMERIVLR 299 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 ++NW+GDG + AV DG + FV++RS++ P P +++ G V+ E GV+ GQACV Sbjct: 300 DVNWIGDGALDRAVGDGLELFVRVRSTRAPQPAWLRAVKGGYEVELVAGEEGVSPGQACV 359 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEES 395 FY + +ARVLGGG I + E + Sbjct: 360 FYDAAEGQARVLGGGFIKSAAPRSIAEPA 388 >gi|56460418|ref|YP_155699.1| tRNA-specific 2-thiouridylase MnmA [Idiomarina loihiensis L2TR] gi|73920125|sp|Q5QYZ7|MNMA_IDILO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|56179428|gb|AAV82150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Idiomarina loihiensis L2TR] Length = 371 Score = 491 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 127/378 (33%), Positives = 195/378 (51%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A D+ DA Sbjct: 2 SNASKKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDTDE---YCAASDDLADA 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 +VC+T+ + + ++ + + V F Y AG TP P + CN+ +KF L + Sbjct: 59 EKVCETLGIELHTINFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLEFAAEA 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +ATGHY+R + G + M R +D +DQSYFL+ + + + FP+G++ Sbjct: 119 LDADYIATGHYVRRQQRDG-----KWEMLRGLDSNKDQSYFLYTLSHEHIAQTLFPVGEL 173 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E GL ADK DS ICF+ + K+ D +++ A G I + G+ LG Sbjct: 174 EKPEVRRIAEEQGLVTADKKDSTGICFIGERKFKDFLQQYLP--AKPGPIESVEGEALGE 231 Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GL + GEP +VV D + +IV L + + Sbjct: 232 HEGLMYHTLGQRKGLHIGGMADNSGEPWYVVDKDVERNVLIVAQGKKHPRLYSQGLIAGQ 291 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 ++W+ +A + F C VK R Q +P V +G V F++ V GQ+ V Sbjct: 292 LHWVS----RNAPPEAFDCTVKTRYRQQDIPCRVTPLSNGDFQVQFKEPVAAVTPGQSAV 347 Query: 367 FYTSDSNEARVLGGGIIS 384 FY+ D LGGGII Sbjct: 348 FYSDDV----CLGGGIIE 361 >gi|323494972|ref|ZP_08100063.1| tRNA-specific 2-thiouridylase MnmA [Vibrio brasiliensis LMG 20546] gi|323310767|gb|EGA63940.1| tRNA-specific 2-thiouridylase MnmA [Vibrio brasiliensis LMG 20546] Length = 378 Score = 491 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 123/382 (32%), Positives = 196/382 (51%), Gaps = 27/382 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA Sbjct: 7 DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 63 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 64 QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 123 Query: 136 LGADVLATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 L AD +A GHY+R ++ + M R +D +DQSYFL+ + Q+ FP+G Sbjct: 124 LDADYIAMGHYVRRTFPTAEELAAGEKPKMLRGLDGNKDQSYFLYTLSSDQVARSLFPVG 183 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR +A E L A K DS ICF+ + K+ D + R A GDI G+++ Sbjct: 184 ELEKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTDFLGRYLP--AQPGDIETPEGKVI 241 Query: 254 GRHNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 G+HNG++ +T+GQR+GL + +P FV D + +I L+ + Sbjct: 242 GKHNGLMYHTLGQRKGLHIGGQKGGGGNEDPWFVGDKDLKRNVLIAVQGKDHPMLKSQGL 301 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASG 362 +++W+ A+ + +C VK R Q +P + DD + V F++ +V V G Sbjct: 302 IASQLHWVDRA----AIKEPLQCTVKTRYRQTDIPCTIIPIDDENIKVIFDEPQVAVTPG 357 Query: 363 QACVFYTSDSNEARVLGGGIIS 384 Q+ VFY + LGGGII Sbjct: 358 QSAVFYKDEV----CLGGGIIE 375 >gi|153875033|ref|ZP_02003007.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Beggiatoa sp. PS] gi|152068503|gb|EDN66993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Beggiatoa sp. PS] Length = 359 Score = 491 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 125/377 (33%), Positives = 187/377 (49%), Gaps = 27/377 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+V+V MSGGVDSSV A LLK+ GY+V G+ ++ + + C A +DV DA+ VC Sbjct: 1 MKVIVGMSGGVDSSVAALLLKKQGYEVQGLFMKNWEEDD---TENYCSAAEDVRDAQAVC 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 DT+ + + ++ + + V Y AG TP P + CNR +KF L LG Sbjct: 58 DTLEIPLHTVNFATEYWDNVFTHCLQEYQAGRTPNPDILCNREIKFKVFLEHALHLGGKA 117 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + + D +DQSYFL+ Q QL FP+G+++K V Sbjct: 118 IATGHYVRLG-----KNNAHYQLLKGHDPNKDQSYFLYTLGQSQLAHSLFPIGELQKTQV 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R LA + GL K DS ICF+ + + + R G + G++LG+H+G++ Sbjct: 173 RQLAEQAGLATYAKKDSTGICFIGERPFKAFLSRFLP--TQPGPMETPEGEVLGQHDGLM 230 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YT+GQR+GL + GEP +VV D ++R+IVG L + ++++W+ Sbjct: 231 YYTLGQRQGLNIGGQVGGSGEPWYVVAKDMPNNRLIVGQGHNHPLLFCDGLKAQQLHWIS 290 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371 A F C K R Q P + D+ V F + + V GQ+ VFY +D Sbjct: 291 GI----APSLPFSCSAKTRYRQTEQPCVITALDNETCEVHFNQPQRAVTPGQSVVFYQND 346 Query: 372 SNEARVLGGGIISGSKR 388 LGG II + Sbjct: 347 ----ECLGGAIIEMTYN 359 >gi|218700344|ref|YP_002407973.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli IAI39] gi|218704607|ref|YP_002412126.1| tRNA -specific 2-thiouridylase MnmA [Escherichia coli UMN026] gi|218370330|emb|CAR18133.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli IAI39] gi|218431704|emb|CAR12586.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli UMN026] gi|284920959|emb|CBG34022.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 042] gi|330910947|gb|EGH39457.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli AA86] Length = 368 Score = 491 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VC Sbjct: 6 KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L LGAD Sbjct: 63 DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G+ Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +T+GQR+GLG+ EP +VV D ++ +IV L + ++++W+ Sbjct: 236 MYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWV 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370 + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNG 351 Query: 371 DSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 EV----CLGGGIIE 361 >gi|89107979|ref|AP_001759.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Escherichia coli str. K-12 substr. W3110] gi|90111218|ref|NP_415651.4| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|157156703|ref|YP_001462402.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli E24377A] gi|157160657|ref|YP_001457975.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli HS] gi|170020474|ref|YP_001725428.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli ATCC 8739] gi|170080784|ref|YP_001730104.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|191168327|ref|ZP_03030119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli B7A] gi|193066260|ref|ZP_03047312.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli E22] gi|193071716|ref|ZP_03052616.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli E110019] gi|194436948|ref|ZP_03069047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 101-1] gi|209918390|ref|YP_002292474.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli SE11] gi|218553711|ref|YP_002386624.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli IAI1] gi|218694667|ref|YP_002402334.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli 55989] gi|238900387|ref|YP_002926183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli BW2952] gi|253773843|ref|YP_003036674.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161240|ref|YP_003044348.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli B str. REL606] gi|256018611|ref|ZP_05432476.1| tRNA-specific 2-thiouridylase MnmA [Shigella sp. D9] gi|256023169|ref|ZP_05437034.1| tRNA-specific 2-thiouridylase MnmA [Escherichia sp. 4_1_40B] gi|260843449|ref|YP_003221227.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Escherichia coli O103:H2 str. 12009] gi|260854815|ref|YP_003228706.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Escherichia coli O26:H11 str. 11368] gi|260867562|ref|YP_003233964.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Escherichia coli O111:H- str. 11128] gi|293433421|ref|ZP_06661849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli B088] gi|297518453|ref|ZP_06936839.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli OP50] gi|301029558|ref|ZP_07192636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 196-1] gi|307137768|ref|ZP_07497124.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli H736] gi|307310090|ref|ZP_07589740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli W] gi|331667534|ref|ZP_08368398.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli TA271] gi|8039808|sp|P25745|MNMA_ECOLI RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205816868|sp|A7ZZ88|MNMA_ECOHS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205816869|sp|B1XA43|MNMA_ECODH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205816870|sp|A7ZKS3|MNMA_ECO24 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205816881|sp|B1IUD4|MNMA_ECOLC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|4062697|dbj|BAA35955.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Escherichia coli str. K12 substr. W3110] gi|87081837|gb|AAC74217.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli str. K-12 substr. MG1655] gi|157066337|gb|ABV05592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli HS] gi|157078733|gb|ABV18441.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli E24377A] gi|169755402|gb|ACA78101.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli ATCC 8739] gi|169888619|gb|ACB02326.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli str. K-12 substr. DH10B] gi|190901622|gb|EDV61379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli B7A] gi|192926109|gb|EDV80751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli E22] gi|192954978|gb|EDV85481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli E110019] gi|194423931|gb|EDX39919.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 101-1] gi|209911649|dbj|BAG76723.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Escherichia coli SE11] gi|218351399|emb|CAU97105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 55989] gi|218360479|emb|CAQ98033.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli IAI1] gi|238863704|gb|ACR65702.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli BW2952] gi|242376935|emb|CAQ31656.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli BL21(DE3)] gi|253324887|gb|ACT29489.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973141|gb|ACT38812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli B str. REL606] gi|253977355|gb|ACT43025.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli BL21(DE3)] gi|257753464|dbj|BAI24966.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Escherichia coli O26:H11 str. 11368] gi|257758596|dbj|BAI30093.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Escherichia coli O103:H2 str. 12009] gi|257763918|dbj|BAI35413.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Escherichia coli O111:H- str. 11128] gi|260449728|gb|ACX40150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli DH1] gi|291324240|gb|EFE63662.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli B088] gi|299877553|gb|EFI85764.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli MS 196-1] gi|306909808|gb|EFN40302.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli W] gi|309701457|emb|CBJ00761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli ETEC H10407] gi|315060410|gb|ADT74737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli W] gi|315616009|gb|EFU96635.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 3431] gi|320175639|gb|EFW50731.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Shigella dysenteriae CDC 74-1112] gi|320184390|gb|EFW59201.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Shigella flexneri CDC 796-83] gi|320201029|gb|EFW75613.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Escherichia coli EC4100B] gi|323153179|gb|EFZ39443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli EPECa14] gi|323179331|gb|EFZ64901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 1180] gi|323185683|gb|EFZ71044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 1357] gi|323379030|gb|ADX51298.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli KO11] gi|323937873|gb|EGB34137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli E1520] gi|323942603|gb|EGB38770.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli E482] gi|323962732|gb|EGB58310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli H489] gi|323973277|gb|EGB68466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli TA007] gi|324117296|gb|EGC11203.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli E1167] gi|331065119|gb|EGI37014.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli TA271] Length = 368 Score = 491 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 122/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VC Sbjct: 6 KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L LGAD Sbjct: 63 DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G+ Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +T+GQR+GLG+ EP +VV D ++ ++V L + ++++W+ Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWV 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370 + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNG 351 Query: 371 DSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 EV----CLGGGIIE 361 >gi|113461819|ref|YP_719888.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus somnus 129PT] gi|123327501|sp|Q0I5Y6|MNMA_HAES1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|112823862|gb|ABI25951.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus somnus 129PT] Length = 383 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 125/394 (31%), Positives = 210/394 (53%), Gaps = 29/394 (7%) Query: 5 EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64 + +L SL++ KN K +V+ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 9 KLPKLTSLEIAKNSK-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD-- 65 Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ + Sbjct: 66 -YCTAANDLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEI 124 Query: 125 KFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183 KF L LGAD +ATGHY+R D + + R +D +DQSYFL+ ++ Sbjct: 125 KFKAFLEYAVEDLGADYIATGHYVRRS-----DVNGQTKLLRGLDSNKDQSYFLYTLSKD 179 Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243 Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ + + R A G Sbjct: 180 QVAQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKEFLARFLP--AQPG 237 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---R 295 +I ++G+++G+H+G++ YT+GQR+GLG+ +P +VV D ++ ++V Sbjct: 238 EIRMVDGKVIGKHDGLMYYTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGNDN 297 Query: 296 ESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEK 354 +L + ++ W+ + +C VK R Q + + NDD V V F++ Sbjct: 298 SALLSQGLIATQLYWVD----RLPIRQNLRCTVKTRYRQQDIACEVIPLNDDCVEVRFDE 353 Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388 ++ V GQ+ VFY + LGGG+I + Sbjct: 354 PQIAVTPGQSAVFYQGE----ECLGGGVIERQIK 383 >gi|161986546|ref|YP_310111.2| tRNA-specific 2-thiouridylase MnmA [Shigella sonnei Ss046] gi|205829110|sp|Q3Z2Y6|MNMA_SHISS RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 368 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 122/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VC Sbjct: 6 KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L LGAD Sbjct: 63 DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++GL A K DS ICF+ + K+ + + R G G I+ ++G +G H G+ Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPG--QPGKIITVDGDEIGEHQGL 235 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +T+GQR+GLG+ EP +VV D ++ ++V L + ++++W+ Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWV 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370 + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNG 351 Query: 371 DSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 EV----CLGGGIIE 361 >gi|187730842|ref|YP_001879941.1| tRNA-specific 2-thiouridylase MnmA [Shigella boydii CDC 3083-94] gi|205816914|sp|B2TZ86|MNMA_SHIB3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|187427834|gb|ACD07108.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shigella boydii CDC 3083-94] Length = 368 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VC Sbjct: 6 KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139 D + + + ++ + N V F + Y AG TP P + CN+ +KF L LGAD Sbjct: 63 DKLGIELHTVNFAAEYWNNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G+ Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +T+GQR+GLG+ EP +VV D ++ ++V L + ++++W+ Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWV 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370 + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNG 351 Query: 371 DSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 EV----CLGGGIIE 361 >gi|110805161|ref|YP_688681.1| tRNA-specific 2-thiouridylase MnmA [Shigella flexneri 5 str. 8401] gi|161485922|ref|NP_707062.2| tRNA-specific 2-thiouridylase MnmA [Shigella flexneri 2a str. 301] gi|161486505|ref|NP_836851.2| tRNA-specific 2-thiouridylase MnmA [Shigella flexneri 2a str. 2457T] gi|123342960|sp|Q0T5N9|MNMA_SHIF8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205828969|sp|Q83LF7|MNMA_SHIFL RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|110614709|gb|ABF03376.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] gi|313650389|gb|EFS14796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shigella flexneri 2a str. 2457T] Length = 368 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 122/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VC Sbjct: 6 KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L LGAD Sbjct: 63 DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G+ Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +T+GQR+GLG+ EP +VV D ++ ++V L + ++++W+ Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWV 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370 + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIKVIFDEPVAAVTPGQSAVFYNG 351 Query: 371 DSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 EV----CLGGGIIE 361 >gi|195979019|ref|YP_002124263.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|229487422|sp|B4U0P1|MNMA_STREM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|195975724|gb|ACG63250.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 374 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 133/391 (34%), Positives = 193/391 (49%), Gaps = 25/391 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + + RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D Sbjct: 1 MMTDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D V D I + +Y ++E+ + + V F + Y +G TP P V CN+ +KF L Sbjct: 58 KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRSGRTPNPDVMCNKEIKFKAFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + D M R +D +DQ+YFL +Q+QL FPLG Sbjct: 118 MTLGADYVATGHYAQIKR----DENGVVHMLRGLDKGKDQTYFLSQLSQEQLQKTMFPLG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR +A + GL A K DS ICF+ + + + A +G ++ ++G+ + Sbjct: 174 HLQKSEVRAIAEQAGLATAKKKDSTGICFIGEKNFKTFLSHYLP--AQKGRMMTVDGRDM 231 Query: 254 GRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 G H G++ YTIGQR GLG+ +P FVV D + + + VG ESL + Sbjct: 232 GEHAGLMYYTIGQRGGLGIGGQQGGDNKPWFVVGKDLSQNILYVGQGFYHESLMSTSLDA 291 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 I + + E +C K R Q V V D V F + + + GQA Sbjct: 292 SVIQFTREVPEE----FTLECTAKFRYRQPDSKVTVHVKKDKAKVVFAEPQRAITPGQAV 347 Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEESL 396 VFY LGGGII + + + + Sbjct: 348 VFYDG----HECLGGGIIDMAYKDGEPCQYI 374 >gi|323497848|ref|ZP_08102859.1| tRNA-specific 2-thiouridylase MnmA [Vibrio sinaloensis DSM 21326] gi|323317076|gb|EGA70076.1| tRNA-specific 2-thiouridylase MnmA [Vibrio sinaloensis DSM 21326] Length = 369 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 121/381 (31%), Positives = 193/381 (50%), Gaps = 28/381 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 60 QAVCDKLGIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY+R + + M R +D +DQSYFL+ + Q+ FP+G++ Sbjct: 120 LDADYIAMGHYVRRTF---PENGEKAQMLRGLDSNKDQSYFLYTLSSDQVERSLFPVGEL 176 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E L A K DS ICF+ + K+ + + + A GDI G+++G+ Sbjct: 177 EKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGDIETPEGKVIGQ 234 Query: 256 HNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 H G++ +T+GQR+GL + EP FV D + +I L+ + Sbjct: 235 HQGLMYHTLGQRKGLHIGGQKGGGGNEEPWFVGDKDLKRNVLIAVQGKDHPLLKSEGLIA 294 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQA 364 +++W+ + D KC VK R Q +P + DD + V F++ ++ V GQ+ Sbjct: 295 SQLHWVD----RTPIKDVLKCTVKTRYRQTDIPCTIIPIDDENIKVIFDEPQIAVTPGQS 350 Query: 365 CVFYTSDSNEARVLGGGIISG 385 VFY + LGGGII Sbjct: 351 AVFYQDEV----CLGGGIIEK 367 >gi|225871462|ref|YP_002747409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus equi subsp. equi 4047] gi|254811462|sp|C0MB53|MNMA_STRE4 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|225700866|emb|CAW95613.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus equi subsp. equi 4047] Length = 374 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 133/391 (34%), Positives = 193/391 (49%), Gaps = 25/391 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + + RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D Sbjct: 1 MMTDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D V D I + +Y ++E+ + + V F + Y +G TP P V CN+ +KF L Sbjct: 58 KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRSGRTPNPDVMCNKEIKFKAFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + D M R +D +DQ+YFL +Q+QL FPLG Sbjct: 118 MTLGADYVATGHYAQIKR----DENGVVHMLRGLDKGKDQTYFLSQLSQEQLQKTMFPLG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR +A + GL A K DS ICF+ + + + A +G ++ ++G+ + Sbjct: 174 HLQKSEVRAIAEQAGLATAKKKDSTGICFISEKNFKTFLSHYLP--AQKGRMMTVDGRDM 231 Query: 254 GRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 G H G++ YTIGQR GLG+ +P FVV D + + + VG ESL + Sbjct: 232 GEHAGLMYYTIGQRGGLGIGGQQGGDNKPWFVVGKDLSQNILYVGQGFYHESLMSTSLDA 291 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 I + + E +C K R Q V V D V F + + + GQA Sbjct: 292 SVIQFTREVPEE----FTLECTAKFRYRQPDSKVTVHVKKDKAKVVFAEPQRAITPGQAV 347 Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEESL 396 VFY LGGGII + + + + Sbjct: 348 VFYDG----HECLGGGIIDMAYKDGEPCQYI 374 >gi|315126737|ref|YP_004068740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudoalteromonas sp. SM9913] gi|315015251|gb|ADT68589.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudoalteromonas sp. SM9913] Length = 366 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 125/377 (33%), Positives = 195/377 (51%), Gaps = 28/377 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNDE---YCAAAEDLKDAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGIELHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAQALGADF 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R L + +MCR +D +DQSYFL+ + + FP+GD+ K V Sbjct: 125 IATGHYVRRELRDD-----KYVMCRGLDDNKDQSYFLYTLGHEHIAQTLFPVGDIAKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E L DK DS ICF+ + K+ D +++ A G I +G +G H G++ Sbjct: 180 RRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLP--AQPGVIEDTDGNNVGEHEGLM 237 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +T+GQR+GL + GEP +VV D + +IVG L + + +++W+ Sbjct: 238 YHTLGQRKGLLIGGMKEGSGEPWYVVDKDVERNVLIVGQGKNHPRLYSNGLNANQLHWVD 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 +C VK R Q+ + + +DG V F++ + V GQ+ VFY ++ Sbjct: 298 ----RVGPQGTTRCTVKTRYRQEDLSCTLLVGEDGMARVLFDEPQKAVTPGQSAVFYANE 353 Query: 372 SNEARVLGGGIISGSKR 388 LGGGII + Sbjct: 354 V----CLGGGIIDSVIK 366 >gi|251793304|ref|YP_003008032.1| tRNA-specific 2-thiouridylase MnmA [Aggregatibacter aphrophilus NJ8700] gi|247534699|gb|ACS97945.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aggregatibacter aphrophilus NJ8700] Length = 384 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 126/388 (32%), Positives = 208/388 (53%), Gaps = 29/388 (7%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 +L++ L +N +V+ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 12 AKLSAEQLAQNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 67 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 68 CTAAADLEDAQAVCDKLGIKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKEIKF 127 Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 L LGA+ +ATGHY+R R + + R +D +DQSYFL+ + +Q+ Sbjct: 128 KAFLEYAAEDLGANYIATGHYVRRRGADDN-----AQLLRGLDTNKDQSYFLYTLSTKQV 182 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+GD+ K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 183 GQSLFPVGDIAKPIVRAIAEDLGLVTAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 240 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297 ++G I+GRH+G++ +T+GQR+GLG+ E +VV D ++ +IV + Sbjct: 241 RTVDGDIIGRHDGLMYHTLGQRKGLGIGGVKGASEEAWYVVEKDLVNNELIVAQGHDHSA 300 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSE 356 L + ++++W+ + + +C VK R Q VP ++ DD + V F++ + Sbjct: 301 LLSTGLIAQQLHWVD----RQPIRESLRCTVKTRYRQTDVPCIIEPIDDESIKVIFDEPQ 356 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384 + V GQ+ VFY ++ LGGGII Sbjct: 357 IAVTPGQSAVFYLNEV----CLGGGIIE 380 >gi|19747021|ref|NP_608157.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pyogenes MGAS8232] gi|19749279|gb|AAL98656.1| tRNA-methyltransferase [Streptococcus pyogenes MGAS8232] Length = 379 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 133/388 (34%), Positives = 197/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 9 DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 65 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 66 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLGYAMTL 125 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 126 GADYVATGHYAQVKR----DENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 181 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H Sbjct: 182 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEH 239 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ +P FVV D + + + VG E+L + + I Sbjct: 240 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVI 299 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E F+C K R Q V V D V F + + + GQA VFY Sbjct: 300 HFTREMPEE----FTFECTAKFRYRQPDSQVTVHVRGDKAEVVFAEPQRAITPGQAVVFY 355 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGG+I + ++ + + Sbjct: 356 DG----KECLGGGMIDMAYKNGQPCQYI 379 >gi|24638305|sp|Q8NZ00|MNMA_STRP8 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 373 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 133/388 (34%), Positives = 197/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 3 DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLGYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQVKR----DENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H Sbjct: 176 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ +P FVV D + + + VG E+L + + I Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E F+C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTREMPEE----FTFECTAKFRYRQPDSQVTVHVRGDKAEVVFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGG+I + ++ + + Sbjct: 350 DG----KECLGGGMIDMAYKNGQPCQYI 373 >gi|56419544|ref|YP_146862.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus kaustophilus HTA426] gi|81347762|sp|Q5L186|MNMA1_GEOKA RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 gi|56379386|dbj|BAD75294.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Geobacillus kaustophilus HTA426] Length = 370 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 133/387 (34%), Positives = 198/387 (51%), Gaps = 25/387 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K RVVV MSGGVDSSV A LLK++GYDVIGV ++ ++ + G C A +D D +R Sbjct: 2 KKKRVVVGMSGGVDSSVAAYLLKQEGYDVIGVFMKNWDD---TNDDGVCTATEDYEDVKR 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + +Y ++E+ + + V F G TP P V CN +KF + L A Sbjct: 59 VANQLGIPYYSVNFEKEYWDRVFTYFIDELKRGRTPNPDVLCNTEIKFKAFVDYALSLDA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R G + + R D +DQ+YFL T + L + FP+G++ K+ Sbjct: 119 DYIATGHYARINRENG-----QIALLRGKDPNKDQTYFLSQLTAEHLSKVLFPIGELTKD 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A+E+ L A+K DS ICF+ + + + +K A G+I L+G++LG H+G Sbjct: 174 EVRKIAQELNLVNANKKDSTGICFIGERNFKNFLKNYLP--AQPGEIRSLDGEVLGTHDG 231 Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 ++ YTIGQR+ G GEP +VV D ++ ++V +L + I+++ Sbjct: 232 LMYYTIGQRKGLGIGGKGTGEPWYVVDKDLENNVLLVAQGKNHPALFSTGLIASNISFIN 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 D F C K R Q+ V V +G +V+FEK V GQ VFY +D Sbjct: 292 G----DVRPRTFACTAKFRYRQEDQKVTVHIRPNGTAFVEFEKPVKAVTPGQVAVFYDND 347 Query: 372 SNEARVLGGGIISGSKRSDAVEESLLS 398 LG II + DA + S Sbjct: 348 V----CLGSAIIDEVIKMDASTATAAS 370 >gi|302876907|ref|YP_003845540.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium cellulovorans 743B] gi|307687595|ref|ZP_07630041.1| tRNA-specific 2-thiouridylase MnmA [Clostridium cellulovorans 743B] gi|302579764|gb|ADL53776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium cellulovorans 743B] Length = 373 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 133/390 (34%), Positives = 203/390 (52%), Gaps = 23/390 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K K+++VV+ +SGGVDSSV A LK GYDVIGV + ++ + G C + QD Sbjct: 1 MEKENKNIKVVLGVSGGVDSSVAALELKNQGYDVIGVFMNNWDDEDEN---GVCTSVQDF 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D R+VCD+I+V +Y ++++ + + V F + Y +G TP P V CN+ +KF L Sbjct: 58 EDVRKVCDSISVPYYSVNFQKEYWDRVFEYFLAEYRSGRTPNPDVMCNKEIKFKAFLDFA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +GAD +A GHY + G+ + R D +DQ+YFL Q QL FP+G Sbjct: 118 LTVGADYIAMGHYAQVDFRDGE-----YKLLRAADENKDQTYFLCKLNQYQLSKSMFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR+ ARE L A K DS +CF+ + + + A G ++ L+G ++ Sbjct: 173 HLRKPEVREKAREANLVTATKKDSTGVCFIGEKNFRQFLNNYLP--AKSGPMMTLDGNVM 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309 G H G+++YT+GQR+GLG+ GEP FVV D + + V E L + + E++ Sbjct: 231 GEHIGLMHYTLGQRKGLGIGGAGEPWFVVDKDLKKNILYVVQGEQDPRLYSYGLTAVEVS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ E F C K R Q V V R D+ V+F + + + GQ VFY Sbjct: 291 WIS----EKEKPKTFNCTAKFRYRQKDQGVIVHQREDNTCIVEFIEPQKAITPGQIVVFY 346 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESLLS 398 D LGGG I +S +++L+ Sbjct: 347 DGD----ECLGGGTIDKYYKSKQHLQAVLN 372 >gi|192361469|ref|YP_001982951.1| tRNA-specific 2-thiouridylase MnmA [Cellvibrio japonicus Ueda107] gi|190687634|gb|ACE85312.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cellvibrio japonicus Ueda107] Length = 378 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 123/395 (31%), Positives = 201/395 (50%), Gaps = 27/395 (6%) Query: 3 VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62 +S+ T + +V+V MSGGVDSSV A LL++ GY V G+ ++ ++ ++ Sbjct: 1 MSDVTPSTAPVTTSRSPGAKVIVGMSGGVDSSVSALLLQQQGYAVEGLFMKNWDEDDGTE 60 Query: 63 RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122 C A D+ DA+RVCD + + + ++ + + V F Y AG TP P + CNR Sbjct: 61 ---YCTAKADLADAQRVCDKLGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNR 117 Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 +KF + + LG +++ATGHY+R D ++ + +D +DQSYFL A + Sbjct: 118 EIKFKVFMEYAQMLGGELIATGHYVRRA-----DRNGHTLLLKGLDPNKDQSYFLHAVGE 172 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 + FP+G+++K VR +A E GL +K DS ICF+ + ++ D +++ A Sbjct: 173 AEFAKSLFPVGELEKPEVRRIAEEHGLVTHNKKDSTGICFIGERRFKDFLQQYLP--AQP 230 Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP--- 294 G+I +GQ++G H G++ +TIGQR+GLG+ EP FV D + +IV Sbjct: 231 GEIQTPDGQVIGEHMGLMYHTIGQRQGLGIGGVKGANEEPWFVAQKDLGRNVLIVVQGTD 290 Query: 295 RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFE 353 L + + ++ +W+ A F+C K R Q VQ D+G + V F+ Sbjct: 291 HPLLYTNHLLAQQTHWINGS----APASEFRCMAKTRYRQPDQACRVQVLDNGRLDVFFD 346 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388 + + V GQ+ V Y D+ LGG +I + Sbjct: 347 EPQRAVTPGQSLVLYDGDT----CLGGAVIESTDN 377 >gi|254480686|ref|ZP_05093933.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [marine gamma proteobacterium HTCC2148] gi|214039269|gb|EEB79929.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [marine gamma proteobacterium HTCC2148] Length = 363 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 124/374 (33%), Positives = 193/374 (51%), Gaps = 26/374 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LLK GY V G+ ++ + ++ C A +D DA+ V Sbjct: 7 KKVIVGMSGGVDSSVSALLLKEQGYAVEGLFMKNWEEDDGTE---YCTAKEDFADAQAVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + + ++ + + V F Y AG TP P + CNR +KF L LGAD+ Sbjct: 64 DKLGIKLHGANFAAEYWDNVFEHFLDEYRAGRTPNPDILCNREIKFKAFLDYALTLGADL 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R L G + + + +D +DQSYFL A ++L FP+GD++K V Sbjct: 124 IATGHYTRLGLAAG-----QATLLKGLDPNKDQSYFLHAVGHRELAKTLFPVGDIEKPEV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R LA E L A K DS ICF+ + ++ D +++ A GDIV L+G+ LG+H G++ Sbjct: 179 RSLAEEYDLATAKKKDSTGICFIGERRFSDFLQQYLP--AQPGDIVSLDGEHLGQHQGLM 236 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +TIGQR+GLG+ +P +VV D +++ ++V +L + E+ W+ Sbjct: 237 YHTIGQRQGLGIGGLANHTDDPWYVVEKDLDNNVLLVAQGNDHPALFKSSLVTGEVFWVA 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 +C K+R Q + G V+F+ + + GQ+ VFY ++ Sbjct: 297 GA----PPPLPLQCTAKVRYRQSDQSCTITEQKGGYQVEFDAPQRAITPGQSVVFYLGET 352 Query: 373 NEARVLGGGIISGS 386 LGGG+I + Sbjct: 353 ----CLGGGVIERT 362 >gi|239828143|ref|YP_002950767.1| tRNA-specific 2-thiouridylase MnmA [Geobacillus sp. WCH70] gi|239808436|gb|ACS25501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus sp. WCH70] Length = 370 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 133/387 (34%), Positives = 198/387 (51%), Gaps = 25/387 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K RVVV MSGGVDSSV A LLK++GYDVIGV ++ ++ + G C A +D D +R Sbjct: 2 KKKRVVVGMSGGVDSSVAAYLLKQEGYDVIGVFMKNWDD---TNDDGVCTATEDYEDVKR 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + +Y ++E+ + + V F G TP P V CN +KF + L A Sbjct: 59 VANQLGIPYYSVNFEKEYWDRVFTYFIDELKRGRTPNPDVLCNTEIKFKAFVDYALSLDA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R G + + R D +DQ+YFL T + L + FP+G++ K+ Sbjct: 119 DYIATGHYARISRENG-----QIALLRGKDPNKDQTYFLSQLTAEHLSKVLFPIGELTKD 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A+E+ L A+K DS ICF+ + + + +K A G+I L+G++LG H+G Sbjct: 174 EVRKIAQELNLVNANKKDSTGICFIGERNFKNFLKNYLP--AQPGEIRSLDGEVLGTHDG 231 Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 ++ YTIGQR+ G GEP +VV D ++ ++V +L + I+++ Sbjct: 232 LMYYTIGQRKGLGIGGKGTGEPWYVVDKDLENNVLLVAQGKNHPALFSTGLIASNISFIN 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 D F C K R Q+ V V +G +V+FEK V GQ VFY +D Sbjct: 292 G----DVRPRTFACTAKFRYRQEDQKVTVHIRPNGTAFVEFEKPVKAVTPGQVAVFYDND 347 Query: 372 SNEARVLGGGIISGSKRSDAVEESLLS 398 LG II + DA + S Sbjct: 348 V----CLGSAIIDEVIKMDASTATAAS 370 >gi|206576946|ref|YP_002239233.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Klebsiella pneumoniae 342] gi|229486343|sp|B5XSN3|MNMA_KLEP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|206566004|gb|ACI07780.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Klebsiella pneumoniae 342] Length = 368 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 122/376 (32%), Positives = 195/376 (51%), Gaps = 28/376 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A D+ DA+ Sbjct: 4 SQKKVIVGMSGGVDSSVSAYLLLQQGYKVEGLFMKNWEEDDGEE---YCTAAADLADAQA 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLG 137 VCD + + + ++ + + V F Y AG TP P + CN+ +KF L LG Sbjct: 61 VCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLG 120 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 121 ADYIATGHYVRRA-----DVDGKSQLLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGELEK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR +A E+ L A K DS ICF+ + K+ D + R A G I+ ++G+ +G H Sbjct: 176 PQVRKIAEELDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKILTVDGEEIGTHQ 233 Query: 258 GIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G++ +T+GQR+GLG+ +P +VV D ++ +IV L + ++++ Sbjct: 234 GLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGHDHPRLMSVGLIAQQLH 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + + +C VK R Q +P V ++D + V F++ V GQ+ VFY Sbjct: 294 WVD----REPLQGTLRCTVKTRYRQTDIPCTVTALDEDRIEVRFDEPVAAVTPGQSAVFY 349 Query: 369 TSDSNEARVLGGGIIS 384 + LGGGII Sbjct: 350 LGEV----CLGGGIIE 361 >gi|27382106|ref|NP_773635.1| tRNA-specific 2-thiouridylase MnmA [Bradyrhizobium japonicum USDA 110] gi|81735060|sp|Q89ES7|MNMA_BRAJA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|27355276|dbj|BAC52260.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Bradyrhizobium japonicum USDA 110] Length = 393 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 215/378 (56%), Positives = 277/378 (73%), Gaps = 4/378 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL+ P+D RVVVAMSGGVDSS AALLK +GYDV+G+TLQLY+ A+ RKG+CC Sbjct: 2 LNSLDLEGRPQDTRVVVAMSGGVDSSTTAALLKAEGYDVVGITLQLYDHGAATHRKGACC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V + + HYV DYE+RFR +VI FA SYA GETP+PC++CNR++KF D Sbjct: 62 AGQDIHDARDVAAKLGIPHYVLDYEDRFRESVIDNFADSYALGETPVPCIECNRSIKFRD 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL R+LGA LATGHY+ SR DDG R++ D +RDQSYFLFATTQ+QL L Sbjct: 122 LLKTARELGAQALATGHYVASRRL--DDGS--RVLVCAADADRDQSYFLFATTQEQLDYL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K R+LAR GL +ADK DSQDICFV G+Y D++ R+ GDIV L Sbjct: 178 RFPLGDMTKPETRELARRFGLAVADKHDSQDICFVPTGRYTDIITRLRPNAMDPGDIVDL 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LGRHNGI N+T+GQRRGLG+A PLFVV L+ + RV+VGPRE+L++HRI LR++ Sbjct: 238 DGRVLGRHNGIANFTVGQRRGLGIAAHAPLFVVRLEAANRRVVVGPREALKMHRISLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NWLG G + A+ +G + FV++RS++ P P +++ ++ E GV+ GQACVFY Sbjct: 298 NWLGGGDIDSAIGNGLEMFVRVRSTRSPQPAWLRGAGGHYEIELVAGEEGVSPGQACVFY 357 Query: 369 TSDSNEARVLGGGIISGS 386 + S +ARVLGGG I + Sbjct: 358 DAPSGQARVLGGGFIQSA 375 >gi|119470125|ref|ZP_01612891.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alteromonadales bacterium TW-7] gi|119446546|gb|EAW27820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alteromonadales bacterium TW-7] Length = 366 Score = 491 bits (1264), Expect = e-136, Method: Composition-based stats. Identities = 125/377 (33%), Positives = 193/377 (51%), Gaps = 28/377 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A +D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNDE---YCAAAEDLKDAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLGADV 140 + + + ++ + + V F Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGIELHTVNFAAEYWDNVFEYFLEEYKAGRTPNPDIMCNKEIKFKAFLEFAAQALGADF 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R L + +MCR +D +DQSYFL+ + + + FP+GD+ K V Sbjct: 125 IATGHYVRRELRDD-----KYVMCRGLDNNKDQSYFLYTLSHEHIAQTLFPVGDIAKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E L DK DS ICF+ + K+ D +++ A G I G +G H G++ Sbjct: 180 RRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLP--AQPGVIEDTEGNNVGEHEGLM 237 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +T+GQR+GL + GEP +VV D + +IVG L + + +++W+ Sbjct: 238 YHTLGQRKGLLIGGMKEGSGEPWYVVDKDVERNVLIVGQGKDHPRLYSNGLNANQLHWVD 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 +C VK R Q+ + + DDG V F++ + V GQ+ VFY + Sbjct: 298 ----RVGPKGTTRCTVKTRYRQEDINCTLLVGDDGMARVLFDEPQKAVTPGQSAVFYAQE 353 Query: 372 SNEARVLGGGIISGSKR 388 LGGGII + Sbjct: 354 V----CLGGGIIDSVIK 366 >gi|329568350|gb|EGG50159.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX1467] Length = 374 Score = 490 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 136/389 (34%), Positives = 197/389 (50%), Gaps = 26/389 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V D I + +Y ++E+ + + V F + Y G TP P V CN+ +KF L QL Sbjct: 60 AKVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + V D M R +D +DQ+YFL +Q QL FPLG M+ Sbjct: 120 GADYVATGHYAQ----VETDENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGME 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A GL A K DS +CF+ + + + + A +G++V +G+I G+H Sbjct: 176 KSEVRAIAERAGLATAKKKDSTGVCFIGEKNFKEFLSNYLP--AKKGNMVTEDGEIKGQH 233 Query: 257 NGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 +G++ YTI G G G EP FV+ D + V+VG E L + E++ Sbjct: 234 DGLMYYTIGQRQGLGIGGGGKTQEPWFVIGKDLTTYNVLVGQGFHHEKLYATHLEASEVH 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVF 367 + D + F C K R Q +PV V ++DG V F++ V GQA VF Sbjct: 294 FTVDT----PMPKEFDCTAKFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVF 349 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396 Y LGGG+I + + + + + Sbjct: 350 YDG----MECLGGGLIDRAYQDEKELQYV 374 >gi|332035000|gb|EGI71520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudoalteromonas haloplanktis ANT/505] Length = 366 Score = 490 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 124/377 (32%), Positives = 195/377 (51%), Gaps = 28/377 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNDE---YCAAADDLKDAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGIELHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAQALGADF 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R L + +MCR +D +DQSYFL+ + + + FP+GD++K V Sbjct: 125 IATGHYVRRELRDD-----KYVMCRGLDNNKDQSYFLYTLSHEHIGQTLFPVGDIEKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E L DK DS ICF+ + K+ D +++ A G I +G +G H G++ Sbjct: 180 RRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLP--AQPGVIEDTDGNNVGEHEGLM 237 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +T+GQR+GL + GEP +VV D + ++VG L + + +++W+ Sbjct: 238 YHTLGQRKGLLIGGMKEGSGEPWYVVDKDLERNVLVVGQGKDHPRLYSNGLNANQLHWVD 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 +C VK R Q+ + + +DG V F++ + V GQ+ VFY D Sbjct: 298 ----RVGPKGTTRCTVKTRYRQEDLSCTLLVGEDGMARVLFDEPQKAVTPGQSAVFYAED 353 Query: 372 SNEARVLGGGIISGSKR 388 LGGGII + Sbjct: 354 V----CLGGGIIDSVIK 366 >gi|261339434|ref|ZP_05967292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterobacter cancerogenus ATCC 35316] gi|288318240|gb|EFC57178.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterobacter cancerogenus ATCC 35316] Length = 370 Score = 490 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 123/378 (32%), Positives = 197/378 (52%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEE---YCTAAADLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 120 LGADYIATGHYVRRA-----DVNGKSQLLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A + L A K DS ICF+ + K+ + + R A G IV ++G +G+ Sbjct: 175 EKPEVRKIAEALDLITAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIVTVDGDEIGQ 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ +P +VV D ++ +IV L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILIVAQGHDHPRLMSVGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366 ++W+ + V +C VK R Q +P V +DD + V F++ V GQ+ V Sbjct: 293 LHWVD----REPVKGTLRCTVKTRYRQTDIPCTVTALDDDRIDVRFDEPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY+ + LGGGII Sbjct: 349 FYSGEI----CLGGGIIE 362 >gi|238922133|ref|YP_002935647.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium eligens ATCC 27750] gi|238873805|gb|ACR73513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium eligens ATCC 27750] Length = 355 Score = 490 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 135/365 (36%), Positives = 206/365 (56%), Gaps = 13/365 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + CC V DARRV Sbjct: 2 KKKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDDATEAAENGCCGISAVDDARRV 61 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +++ +YV +++ F+ VI F Y G TP PC+ CNR VK+ LL + ++GAD Sbjct: 62 AGQLDIPYYVMNFKNEFKCNVIDYFVDEYKKGRTPNPCIACNRYVKWESLLKRSLEIGAD 121 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R +C + +DQ+Y L+ TQ+QL P+GD K+ Sbjct: 122 YIATGHYARIHQLP----NGRYTICNSVTARKDQTYALYNLTQEQLSHTLLPIGDYTKDQ 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A ++G+ +A K DS +ICF+ Y +KR ++ G+ + +NG ++GRH GI Sbjct: 178 VREIASKIGITVAKKPDSMEICFIPDNDYAGFIKRETGYTSVPGNFIDVNGNVIGRHQGI 237 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 I+YT+GQR+GLG+A+G+P FVV + ++ V++G + ++Y +N++ E Sbjct: 238 IHYTVGQRKGLGLALGKPAFVVAIRPETNEVVIGDNSDVFSPKLYANNLNFMSIPSLE-- 295 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + KIR S + ++ +++ + F++ V GQA V Y D+ VL Sbjct: 296 --GEMRAKGKIRYSHEGAMCTIRMFDENTLECTFDEPVRAVTPGQALVLYDGDN----VL 349 Query: 379 GGGII 383 GGG I Sbjct: 350 GGGTI 354 >gi|213052788|ref|ZP_03345666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 374 Score = 490 bits (1263), Expect = e-136, Method: Composition-based stats. Identities = 122/375 (32%), Positives = 195/375 (52%), Gaps = 28/375 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ V Sbjct: 11 QKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAV 67 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGA 138 CD + + + ++ + + V F Y AG TP P + CN+ +KF L LGA Sbjct: 68 CDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGA 127 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY+R D + + R +D +DQSYFL+ +Q+ FP+G+++K Sbjct: 128 DYIATGHYVRRA-----DVNGKSRLLRGLDGNKDQSYFLYTLGHEQIAQSLFPVGELEKP 182 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A ++GL A K DS ICF+ + K+ D + R A G I+ ++G +G H G Sbjct: 183 QVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDEIGEHQG 240 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 ++ +T+GQR+GLG+ +P +VV D ++ +IV L + ++++W Sbjct: 241 LMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGHEHPRLMSVGLIAQQLHW 300 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYT 369 + + +C VK R Q +P + +DD + V F++ V GQ+ VFY+ Sbjct: 301 VD----REPFTGTLRCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQSAVFYS 356 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 357 GEV----CLGGGIIE 367 >gi|215486387|ref|YP_002328818.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O127:H6 str. E2348/69] gi|215264459|emb|CAS08822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli O127:H6 str. E2348/69] Length = 368 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 196/374 (52%), Gaps = 28/374 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VC Sbjct: 6 KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L LGAD Sbjct: 63 DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G+ Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +T+GQR+GLG+ EP +VV D ++ +IV L + ++++W+ Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWV 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTS 370 + +C VK R Q +P V+ D D + V F++ V GQ+ VFY Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDADRIEVIFDEPVAAVTPGQSAVFYNG 351 Query: 371 DSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 EV----CLGGGIIE 361 >gi|225869459|ref|YP_002745407.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus equi subsp. zooepidemicus] gi|259495839|sp|C0MGQ2|MNMA_STRS7 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|225702735|emb|CAX00880.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus equi subsp. zooepidemicus] Length = 374 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 133/391 (34%), Positives = 192/391 (49%), Gaps = 25/391 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + + RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D Sbjct: 1 MMTDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D V D I + +Y ++E+ + + V F + Y +G TP P V CN+ +KF L Sbjct: 58 KDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRSGRTPNPDVMCNKEIKFKAFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG Sbjct: 118 MTLGADYVATGHYAQIKR----DENGVVHMLRGFDKGKDQTYFLSQLSQKQLQKTMFPLG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR +A + GL A K DS ICF+ + + + A +G ++ ++G+ + Sbjct: 174 HLQKSEVRAIAEQAGLATAKKKDSTGICFIGEKNFKTFLSHYLP--AQKGRMMTVDGRDM 231 Query: 254 GRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 G H G++ YTIGQR GLG+ +P FVV D + + + VG ESL + Sbjct: 232 GEHAGLMYYTIGQRGGLGIGGQQGGDNKPWFVVGKDLSQNILYVGQGFYHESLMSTSLDA 291 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 I + + E +C K R Q V V D V F + + + GQA Sbjct: 292 SVIQFTREVPEE----FTLECTAKFRYRQPDSKVTVHVKKDKAKVVFAEPQRAITPGQAV 347 Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEESL 396 VFY LGGGII + + + + Sbjct: 348 VFYDG----HECLGGGIIDMAYKDGEPCQYI 374 >gi|212634687|ref|YP_002311212.1| tRNA-specific 2-thiouridylase MnmA [Shewanella piezotolerans WP3] gi|226704776|sp|B8CLH4|MNMA_SHEPW RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|212556171|gb|ACJ28625.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella piezotolerans WP3] Length = 371 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 126/375 (33%), Positives = 197/375 (52%), Gaps = 28/375 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A D+ DA+ V Sbjct: 10 GKKVIVGMSGGVDSSVSAYLLMKQGYQVEGLFMKNWEEDDTDE---YCAAADDLKDAQAV 66 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGA 138 CD + + + ++ + + V F + Y AG TP P + CN+ +KF L + L A Sbjct: 67 CDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADEILDA 126 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +A GHY+R R D M R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 127 DYIAMGHYVRRR-----DIDGTSQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKS 181 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VRD+A+EMGL DK DS ICF+ + K+ D + A G+I G+++G+H G Sbjct: 182 EVRDIAKEMGLITHDKKDSTGICFIGERKFTDFLSTFLP--AQPGNIETSEGEVIGQHQG 239 Query: 259 IINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 ++ +T+GQR+GLG+ +P +VV D + ++VG L + + +++W Sbjct: 240 LMYHTLGQRKGLGIGGLKNSSEDPWYVVEKDLVRNVLVVGQGGNHPRLMSNGLLANQLHW 299 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYT 369 + +G K +K R Q VP V + DD + V F+++ V GQ+ VFY Sbjct: 300 VD----RKGPAEGAKITLKTRYRQHDVPCTVTYDSDDQIRVIFDEAVAAVTPGQSAVFYD 355 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 356 GEI----CLGGGIID 366 >gi|156974113|ref|YP_001445020.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio harveyi ATCC BAA-1116] gi|166235090|sp|A7MSW1|MNMA_VIBHB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|156525707|gb|ABU70793.1| hypothetical protein VIBHAR_01824 [Vibrio harveyi ATCC BAA-1116] Length = 374 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 122/380 (32%), Positives = 197/380 (51%), Gaps = 28/380 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD +++ + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 60 QAVCDKLDIHLHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +A GHY+R D+ + M R +D +DQSYFL+ + +Q+ FP+GD+ Sbjct: 120 LDADYIAMGHYVRRSFPENDE---KPQMLRGLDSNKDQSYFLYTLSNEQIARSLFPVGDL 176 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E L A K DS ICF+ + K+ + + R A G+I G+++G+ Sbjct: 177 EKPEVRRIAEEQDLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQ 234 Query: 256 HNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 H G++ +T+GQR+GL + +P FV D + +I L+ + Sbjct: 235 HQGLMYHTLGQRKGLHIGGRKGGGGNEDPWFVGEKDLERNVLIAVQGKDHPMLKSEGLLA 294 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQA 364 +++W+ + + D KC VK R Q+ +P + DD + V F++ ++ V GQ+ Sbjct: 295 SQLHWVD----REPIRDVMKCTVKTRYRQEDIPCTIIPIDDENIKVIFDEPQIAVTPGQS 350 Query: 365 CVFYTSDSNEARVLGGGIIS 384 VFY D LGG II Sbjct: 351 AVFYKDDV----CLGGSIIE 366 >gi|71904534|ref|YP_281337.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes MGAS6180] gi|71803629|gb|AAX72982.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pyogenes MGAS6180] Length = 379 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 133/388 (34%), Positives = 197/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 9 DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 65 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 66 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 125 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 126 GADYVATGHYAQVKR----DENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 181 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H Sbjct: 182 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEH 239 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ +P FVV D + + + VG E+L + + I Sbjct: 240 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVI 299 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E F+C K R Q V V D V F + + + GQA VFY Sbjct: 300 HFTREMPEE----FTFECTAKFRYRQPDSHVAVHVRGDKAEVVFAEPQRAITPGQAVVFY 355 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGG+I + ++ + + Sbjct: 356 DG----KECLGGGMIDMAYKNGQPCQYI 379 >gi|291617068|ref|YP_003519810.1| TrmU [Pantoea ananatis LMG 20103] gi|291152098|gb|ADD76682.1| TrmU [Pantoea ananatis LMG 20103] Length = 376 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 126/375 (33%), Positives = 197/375 (52%), Gaps = 28/375 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ V Sbjct: 12 QKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAADDLADAQAV 68 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGA 138 CD + + + ++ + + V F Y AG TP P + CN+ +KF L LGA Sbjct: 69 CDKLGIKLHKVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGA 128 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY+R + D R + R D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 129 DFIATGHYVRRQ-----DSDGRSHLLRGRDGNKDQSYFLYTLSHEQIAQSLFPVGELEKP 183 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E+ L A K DS ICF+ + K+ + + R A G+I ++GQ++G H G Sbjct: 184 EVRRIAEELELITAKKKDSTGICFIGERKFREFLARYLP--AQPGEIETVDGQVVGEHQG 241 Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINW 310 ++ +T+GQR+GLG+ +P +VV D +R+IV G L + ++++W Sbjct: 242 LMYHTLGQRKGLGIGGMKESKDDPWYVVDKDVARNRLIVAQGGDHPRLMSVGLIAQQLHW 301 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + +C VK R Q +P + + DD + V F++ V GQ+ VFY Sbjct: 302 VD----RQPLRAPLRCTVKTRYRQTDIPCEIIPQGDDKIEVRFDEPVAAVTPGQSAVFYL 357 Query: 370 SDSNEARVLGGGIIS 384 D LGGGII Sbjct: 358 GDV----CLGGGIIE 368 >gi|110641310|ref|YP_669040.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli 536] gi|191173062|ref|ZP_03034595.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli F11] gi|218558015|ref|YP_002390928.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli S88] gi|218689086|ref|YP_002397298.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli ED1a] gi|306814017|ref|ZP_07448190.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli NC101] gi|331657197|ref|ZP_08358159.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli TA206] gi|123344119|sp|Q0TIU0|MNMA_ECOL5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205822319|sp|A1AA27|MNMA_ECOK1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205822366|sp|Q1RD20|MNMA_ECOUT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|110342902|gb|ABG69139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 536] gi|190906607|gb|EDV66213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli F11] gi|218364784|emb|CAR02474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli S88] gi|218426650|emb|CAR07478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli ED1a] gi|294491197|gb|ADE89953.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli IHE3034] gi|305852654|gb|EFM53102.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli NC101] gi|307627395|gb|ADN71699.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli UM146] gi|323187621|gb|EFZ72928.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli RN587/1] gi|323953180|gb|EGB49046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli H252] gi|323957959|gb|EGB53671.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli H263] gi|331055445|gb|EGI27454.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli TA206] Length = 368 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 196/374 (52%), Gaps = 28/374 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VC Sbjct: 6 KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L LGAD Sbjct: 63 DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G+ Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +T+GQR+GLG+ EP +VV D ++ +IV L + ++++W+ Sbjct: 236 MYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWV 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTS 370 + +C VK R Q +P V+ D D + V F++ V GQ+ VFY Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDADRIEVIFDEPVAAVTPGQSAVFYNG 351 Query: 371 DSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 EV----CLGGGIIE 361 >gi|205829100|sp|Q48QM8|MNMA_STRPM RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 373 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 133/388 (34%), Positives = 197/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 3 DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQVKR----DENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H Sbjct: 176 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ +P FVV D + + + VG E+L + + I Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E F+C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTREMPEE----FTFECTAKFRYRQPDSHVAVHVRGDKAEVVFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGG+I + ++ + + Sbjct: 350 DG----KECLGGGMIDMAYKNGQPCQYI 373 >gi|295096181|emb|CBK85271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 370 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 121/378 (32%), Positives = 197/378 (52%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYKVEGLFMKNWEEDDGEE---YCTAAADLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 120 LGADYIATGHYVRRA-----DVNGKSQLLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++ L A K DS ICF+ + K+ + + R A G IV ++G +G+ Sbjct: 175 EKPEVRKIAEDLDLITAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIVTVDGDEIGQ 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ +P +VV D ++ ++V L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKEGSEDPWYVVDKDVENNILVVAQGHDHPRLMSVGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACV 366 ++W+ + + +C VK R Q +P V DD + V F++ V GQ+ V Sbjct: 293 LHWVD----REPLKGTLRCTVKTRYRQTDIPCTVTALYDDRIDVRFDEPVSAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY+ + LGGGII Sbjct: 349 FYSGEI----CLGGGIIE 362 >gi|161984923|ref|YP_408327.2| tRNA-specific 2-thiouridylase MnmA [Shigella boydii Sb227] gi|205821943|sp|Q31ZK9|MNMA_SHIBS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|332094391|gb|EGI99440.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shigella boydii 3594-74] Length = 368 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 122/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VC Sbjct: 6 KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L LGAD Sbjct: 63 DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G+ Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +T+GQR+GLG+ EP +VV D ++ ++V L + ++++W+ Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWV 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370 + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 296 D----REPFTGTMRCSVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNG 351 Query: 371 DSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 EV----CLGGGIIE 361 >gi|77360631|ref|YP_340206.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudoalteromonas haloplanktis TAC125] gi|123588218|sp|Q3IH16|MNMA_PSEHT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|76875542|emb|CAI86763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudoalteromonas haloplanktis TAC125] Length = 366 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 126/377 (33%), Positives = 194/377 (51%), Gaps = 28/377 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK+ GY V G+ ++ + + C A D+ DA+ VCD Sbjct: 8 KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNDE---YCAAADDLKDAQAVCD 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLGADV 140 + + + ++ + + V F + Y AG TP P + CN+ +KF L + LGAD Sbjct: 65 KLGIELHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAQALGADF 124 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R L + +MCR +D +DQSYFL+ + + + FP+GD+ K V Sbjct: 125 IATGHYVRRELRDD-----KYVMCRGLDDNKDQSYFLYTLSHEHIGQTLFPVGDIAKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E L DK DS ICF+ + K+ D +++ A G I +G +G H G++ Sbjct: 180 RRIAEEQDLITHDKKDSTGICFIGERKFKDFLQKFLP--AQPGVIEDTDGNNVGEHEGLM 237 Query: 261 NYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +T+GQR+GL + GEP +VV D + +IVG L + + +++W+ Sbjct: 238 YHTLGQRKGLLIGGMKEGSGEPWYVVDKDLERNVLIVGQGKDHPRLYSNGLNANQLHWVD 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 +C VK R Q+ + + +DG V F++ + V GQ+ VFY D Sbjct: 298 ----RIGPKGTTRCTVKTRYRQEDLSCTLLVGEDGMARVLFDEPQKAVTPGQSAVFYAED 353 Query: 372 SNEARVLGGGIISGSKR 388 LGGGII + Sbjct: 354 V----CLGGGIIDSVIK 366 >gi|15675922|ref|NP_270096.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes M1 GAS] gi|71911653|ref|YP_283203.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes MGAS5005] gi|14195262|sp|P58075|MNMA_STRP1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|13623161|gb|AAK34817.1| putative tRNA-(5-methylaminomethyl-2-thiouridylate) [Streptococcus pyogenes M1 GAS] gi|71854435|gb|AAZ52458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptococcus pyogenes MGAS5005] Length = 373 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 133/388 (34%), Positives = 197/388 (50%), Gaps = 25/388 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 3 DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 60 AAVADKIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 120 GADYVATGHYAQVKR----DENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H Sbjct: 176 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEH 233 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ +P FVV D + + + VG E+L + + I Sbjct: 234 AGLMYYTIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 ++ + E F+C K R Q V V D V F + + + GQA VFY Sbjct: 294 HFTREMPEE----FTFECTAKFRYRQPDSHVAVHVRGDKAEVVFAEPQRAITPGQAVVFY 349 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LGGG+I + ++ + + Sbjct: 350 DG----KECLGGGMIDMAYKNGQPCQYI 373 >gi|304413559|ref|ZP_07395032.1| putative tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Candidatus Regiella insecticola LSR1] gi|304284402|gb|EFL92795.1| putative tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Candidatus Regiella insecticola LSR1] Length = 367 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 131/376 (34%), Positives = 206/376 (54%), Gaps = 28/376 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 +++V MSGGVDSSV A LLK+ GY V G+ ++ + C A +D+ DA+ Sbjct: 5 SQKKIIVGMSGGVDSSVAAYLLKQQGYQVAGLFMKNWEEDDND---TYCGAAKDLADAQA 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLG 137 VCD +N++ + ++ + + V F + Y AG TP P + CN+ +KF+ LS +L Sbjct: 62 VCDKLNINLHRVNFAAEYWDNVFKLFLAEYQAGRTPNPDILCNKEIKFNAFLSFACEELE 121 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY+R G + + R +D +DQSYFL+ QQQL FP+GD+KK Sbjct: 122 ADYIATGHYVRRHTSAGKN-----CLLRGLDDNKDQSYFLYTLNQQQLARSLFPIGDLKK 176 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR++A ++ L A K DS ICF+ + K+ D + R A G I+ ++GQ LG+H+ Sbjct: 177 SEVRNIAEQLNLITAKKKDSTGICFIGERKFRDFLARYLP--AQPGSIISVDGQDLGQHH 234 Query: 258 GIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G++ +T+GQR+GLG+ G P +VV + ++ ++V L H + ++++ Sbjct: 235 GLMYHTLGQRKGLGIGGIKEGNGAPWYVVDKNIATNTLLVAQDHKHAKLMSHGLIAQQLS 294 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFY 368 W+ ++ +C VK R Q +P V + ++ + V FE+ V V GQ+ VFY Sbjct: 295 WIDL----PSLTFPLRCMVKTRYRQQDIPCTVFSKAENSIEVRFEQPIVAVTPGQSAVFY 350 Query: 369 TSDSNEARVLGGGIIS 384 D LGGGII Sbjct: 351 QGDI----CLGGGIIE 362 >gi|220929349|ref|YP_002506258.1| tRNA-specific 2-thiouridylase MnmA [Clostridium cellulolyticum H10] gi|219999677|gb|ACL76278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium cellulolyticum H10] Length = 359 Score = 490 bits (1262), Expect = e-136, Method: Composition-based stats. Identities = 136/367 (37%), Positives = 211/367 (57%), Gaps = 14/367 (3%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK--GSCCAGQDVYDARR 78 +V++ MSGGVDSSV AA+L R GY+VIGVTLQ++ +RK G CC+ V DARR Sbjct: 4 KKVMLGMSGGVDSSVAAAILLRQGYEVIGVTLQIWQDMDEERRKSEGGCCSLSAVDDARR 63 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + +YV ++++ F VI F Y G TP PC+ CNR VK+ +L +G Sbjct: 64 VANKLGIPYYVLNFKDIFSKTVIEYFKEEYFKGRTPNPCIACNRHVKWQAMLDKALSMGI 123 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + + D R I+ + + ++DQ+Y L+ TQQQL P+GD K+ Sbjct: 124 DYIATGHYAK---VIQDAETGRFILKKSVTDKKDQTYALYNLTQQQLSHTLMPVGDYTKD 180 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A+E+GL +A K DSQ+ICF+ Y + + G V G +LG H G Sbjct: 181 EIREIAKEIGLSVATKPDSQEICFIHDNDYGKFLSENCDKKIVPGKFVDTKGNVLGNHKG 240 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I++YTIGQR+GLG+A G+P+FVV +D ++ V++G + ++ ++N++ + Sbjct: 241 IVHYTIGQRKGLGIAFGKPMFVVAVDPVNNTVVLGDDSEVFSEKLTASDLNFISI----E 296 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 +DG + KIR S P + +++ + V F+ + + GQ+ VFY D V Sbjct: 297 KPIDGMRVNAKIRYSAKEAPATISIIDENRIRVVFDTPQRAITPGQSVVFYDGDV----V 352 Query: 378 LGGGIIS 384 +GGG I Sbjct: 353 VGGGTID 359 >gi|205822083|sp|Q2ISK2|MNMA_RHOP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 398 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 215/387 (55%), Positives = 273/387 (70%), Gaps = 4/387 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL P+D RVVVAMSGGVDSS AALLK GYDV+G+TLQLY+ A+ RKG+CC Sbjct: 2 LNSLDLAGRPQDTRVVVAMSGGVDSSATAALLKSQGYDVVGITLQLYDHGAATHRKGACC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V + I + HYV DYE RFR +VI FA SYA GETP+PC++CNR+VKF D Sbjct: 62 AGQDIHDARDVAERIGIPHYVLDYESRFRESVIDSFADSYALGETPVPCIECNRSVKFRD 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R+LGA LATGHY+ SR R + D +RDQSYFLFATT++QL L Sbjct: 122 LLATARELGASALATGHYVSSRRLAD----GSRALICAADRDRDQSYFLFATTREQLDFL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K RDLAR+ GL +ADK DSQDICFV G+Y DVV+R+ G+IV L Sbjct: 178 RFPLGDMTKPQTRDLARQFGLSVADKHDSQDICFVPTGRYTDVVERLKPNAMEPGEIVDL 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 NG++LG H GI+++T+GQRRGLG+A PL+V+ LD RV+VGPRE+L + RI LR++ Sbjct: 238 NGRVLGSHPGIVHFTVGQRRGLGIASRAPLYVLRLDAARRRVVVGPREALRMERIVLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GDG + AV DG + FV++RS++ P P +++ G V+ E GV+ GQACVFY Sbjct: 298 NWIGDGALDRAVGDGLELFVRVRSTRAPQPAWLRAVKGGYEVELVAGEEGVSPGQACVFY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEES 395 + +ARVLGGG I + E + Sbjct: 358 DAAEGQARVLGGGFIKSAAPRSIAEPA 384 >gi|194433661|ref|ZP_03065937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shigella dysenteriae 1012] gi|194418090|gb|EDX34183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shigella dysenteriae 1012] gi|320179167|gb|EFW54125.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Shigella boydii ATCC 9905] gi|332089265|gb|EGI94371.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shigella boydii 5216-82] gi|332092905|gb|EGI97973.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shigella dysenteriae 155-74] Length = 368 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 197/374 (52%), Gaps = 28/374 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VC Sbjct: 6 KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L LGAD Sbjct: 63 DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G+ Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGVHQGL 235 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +T+GQR+GLG+ EP +VV D ++ +IV L + ++++W+ Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWV 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370 + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNG 351 Query: 371 DSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 EV----CLGGGIIE 361 >gi|154252635|ref|YP_001413459.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Parvibaculum lavamentivorans DS-1] gi|154156585|gb|ABS63802.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Parvibaculum lavamentivorans DS-1] Length = 462 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 219/372 (58%), Positives = 264/372 (70%), Gaps = 9/372 (2%) Query: 2 VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61 E T LNSLDL P+D RVVVAMSGGVDSSV AALLK GYDV+G+TLQLY+ A Sbjct: 60 AFDEMTGLNSLDLPGRPEDTRVVVAMSGGVDSSVTAALLKEQGYDVVGITLQLYDHGAAV 119 Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 RKG+CCAGQD+ DARRV D I + HYV DYE+RFR AV+ FA SYAAGETP+PCV CN Sbjct: 120 SRKGACCAGQDIQDARRVADQIGIPHYVLDYEDRFRRAVMDDFADSYAAGETPIPCVRCN 179 Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181 VKF DLL R LGA LATGHYI SR G R + RP D ERDQSYFLFATT Sbjct: 180 ERVKFRDLLDTARDLGAAALATGHYIASRR-----GAAGRELHRPRDEERDQSYFLFATT 234 Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 Q+QL LRFPLG++ K R LA MGL++A K DSQDICFV G+Y +V+++ G + Sbjct: 235 QEQLEFLRFPLGELTKPEARALADRMGLEVAGKPDSQDICFVPTGRYTTIVEKLRPGASA 294 Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRES 297 G++VHL+G++LGRH+GI+N+TIGQRRGLG+ EPLFVV LD +VIVGPRE+ Sbjct: 295 PGEVVHLDGRVLGRHSGIVNFTIGQRRGLGIGASEPVSEPLFVVKLDPLKRQVIVGPREA 354 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV 357 LE ++ LR+INWLGDG F + +G K K+RS++ PVP + R +G V+ +SE Sbjct: 355 LETQKLTLRDINWLGDGPFAELPGEGLKIVAKVRSTRPPVPARLFRTGEGAVVELLESEG 414 Query: 358 GVASGQACVFYT 369 GVA GQACVFY Sbjct: 415 GVAPGQACVFYD 426 >gi|327393518|dbj|BAK10940.1| tRNA 5-methylaminomethyl-2- thiouridylate-methyltransferase TrmU [Pantoea ananatis AJ13355] Length = 370 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 126/375 (33%), Positives = 197/375 (52%), Gaps = 28/375 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ V Sbjct: 6 QKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAADDLADAQAV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGA 138 CD + + + ++ + + V F Y AG TP P + CN+ +KF L LGA Sbjct: 63 CDKLGIKLHKVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGA 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY+R + D R + R D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 123 DFIATGHYVRRQ-----DSDGRSHLLRGGDGNKDQSYFLYTLSHEQIAQSLFPVGELEKP 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E+ L A K DS ICF+ + K+ + + R A G+I ++GQ++G H G Sbjct: 178 EVRRIAEELELITAKKKDSTGICFIGERKFREFLARYLP--AQPGEIETVDGQVVGEHQG 235 Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINW 310 ++ +T+GQR+GLG+ +P +VV D +R+IV G L + ++++W Sbjct: 236 LMYHTLGQRKGLGIGGMKESKDDPWYVVDKDVARNRLIVAQGGDHPRLMSVGLIAQQLHW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + +C VK R Q +P + + DD + V F++ V GQ+ VFY Sbjct: 296 VD----RQPLRAPLRCTVKTRYRQTDIPCEIIPQGDDKIEVRFDEPVAAVTPGQSAVFYL 351 Query: 370 SDSNEARVLGGGIIS 384 D LGGGII Sbjct: 352 GDV----CLGGGIIE 362 >gi|205814741|sp|A8AHK2|MNMA_CITK8 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 368 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 123/381 (32%), Positives = 201/381 (52%), Gaps = 30/381 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + ++PK +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ Sbjct: 1 MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 56 ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115 Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 LGAD +ATGHY+R D + + R +D +DQSYFL+ +Q+ FP+ Sbjct: 116 AEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G Sbjct: 171 GELEKPQVRKIAEDLGLITAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDE 228 Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304 +G+H G++ +T+GQR+GLG+ +P +VV D ++ ++V L + Sbjct: 229 IGQHQGLMYHTLGQRKGLGIGGTKEGTEDPWYVVDKDVENNILVVAQGHEHPRLMSVGLI 288 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363 ++++W+ F +C VK R Q +P V+ +D+ + V F++ V GQ Sbjct: 289 AQQLHWVDREPFS----GTLRCTVKTRYRQTDIPCTVKALDDERIEVIFDEPVAAVTPGQ 344 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY + LGGGII Sbjct: 345 SAVFYNGEV----CLGGGIIE 361 >gi|296133414|ref|YP_003640661.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermincola sp. JR] gi|296031992|gb|ADG82760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermincola potens JR] Length = 358 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 156/363 (42%), Positives = 216/363 (59%), Gaps = 13/363 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVVAMSGGVDSS+ AALL+ GYDVIGVT+Q++ + +G CC+ V DARRV D Sbjct: 5 KVVVAMSGGVDSSLAAALLQEQGYDVIGVTMQIW--PAEEQAEGGCCSLAAVEDARRVAD 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 T+ + +YV ++ + FR VI F + Y AG TP PC+ CNR VKF LL LGA+ + Sbjct: 63 TLGIPYYVMNFRDLFRKTVIADFCAEYMAGRTPNPCIVCNRKVKFEALLQKALALGAEYI 122 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R D+ +RR +M R +D +DQ+Y L+ TQ QL PLG+ K R Sbjct: 123 ATGHYARLSY---DEARRRYLMRRALDRGKDQTYALYNLTQYQLKHTLMPLGNYTKAEAR 179 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++GL +A+K DSQ+ICFV Y ++ G + L G +LGRH GI Sbjct: 180 EMAAKLGLRVANKPDSQEICFVTDNNYRRFLEENVDQEIKPGPFLDLEGNVLGRHEGIPF 239 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQR+GLG+A+G+P++VV +D + VI+G E + + + N++ + + Sbjct: 240 YTIGQRKGLGIALGKPMYVVDIDPERNAVILGSNEDVFARGLISTDNNFI----YIPELK 295 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 D + VKIR S P + +DDGV V+FEK + V GQA VFY D V+GGG Sbjct: 296 DPMEVEVKIRYSAQPAKAIIYPHDDGVRVEFEKPQRAVTPGQAAVFYKDD----YVVGGG 351 Query: 382 IIS 384 I Sbjct: 352 TIK 354 >gi|312875501|ref|ZP_07735504.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LEAF 2053A-b] gi|325912819|ref|ZP_08175197.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners UPII 60-B] gi|311089012|gb|EFQ47453.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LEAF 2053A-b] gi|325477812|gb|EGC80946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners UPII 60-B] Length = 375 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 137/381 (35%), Positives = 200/381 (52%), Gaps = 25/381 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSHIRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDD---TDDSGVCTATEDFEDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +RV D I + +Y ++E+ + N V F S Y G TP P + CN+ +KF L +L Sbjct: 60 KRVADKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY ++ D M RP D +DQ+YFL TQ+QL FPL D+ Sbjct: 120 DADYIAMGHYAKTVT----DENGVVHMMRPKDGNKDQTYFLSQVTQEQLKKAIFPLADLS 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A + GL A K DS ICF+ + + + + A+ G+IV +G+I+G+H Sbjct: 176 KPQVRMIAEQAGLATAKKKDSTGICFIGERNFKNFLSEFLP--AMGGNIVTSDGRIVGKH 233 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 +G++ YTIGQR GLG+ + P FVV + + +IV E L + E++ Sbjct: 234 SGLMYYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSELLYASSLDASEVS 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367 + D + C K R Q V V V ++++ V+V+F++ V GQA VF Sbjct: 294 FFTGLPSNDTTI---HCTAKFRYRQPDVAVTVNYNKDNNTVHVEFDELARAVTPGQAIVF 350 Query: 368 YTSDSNEARVLGGGIISGSKR 388 Y + LGG II + R Sbjct: 351 YDGE----ECLGGAIIDKAYR 367 >gi|222055075|ref|YP_002537437.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacter sp. FRC-32] gi|221564364|gb|ACM20336.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacter sp. FRC-32] Length = 370 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 157/378 (41%), Positives = 215/378 (56%), Gaps = 18/378 (4%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK----ASKRKGSCCA 69 ++K RVV+AMSGGVDSSV AALL+ G++VIG+++Q+++ K ++ +CC+ Sbjct: 1 MNKEKSKKRVVIAMSGGVDSSVSAALLQEQGFEVIGISMQVWDYGKFAAAEGEKFDTCCS 60 Query: 70 GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 D++DARRV + + + YV ++E+ F + VI F Y G TP PCV CN+ +KF L Sbjct: 61 LDDIHDARRVAEQLGIPFYVVNFEDEFEDLVIKDFVDEYLKGRTPNPCVRCNQWIKFELL 120 Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 L R LGAD +ATGHY R+ D R + + +D +DQSYFLF TQ+QL Sbjct: 121 LKKARGLGADFIATGHYARTLR----DDTGRFHLLKGVDQTKDQSYFLFTLTQEQLAMTL 176 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 FPLG+M K VR LA L +A+K +SQ+ICFV Y ++ L G+IV + Sbjct: 177 FPLGEMTKTQVRALAARYNLRVAEKGESQEICFVPDNDYVRFIEEERGKELLSGNIVDRS 236 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 G+ILGRH G YTIGQRRGLG+A EPL V+ L+ + V+VGP+++L H + N Sbjct: 237 GKILGRHRGTYRYTIGQRRGLGIAHPEPLHVLELNAETKEVVVGPKDALFSHGLVAANTN 296 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368 W+ A KIR PV V+ V V F + E V GQA VFY Sbjct: 297 WIN-----PAPDAAIVATCKIRYRHQPVSCTVKPLPCSRVEVRFAEREKSVTPGQAVVFY 351 Query: 369 TSDSNEARVLGGGIISGS 386 D+ VLGGG I + Sbjct: 352 EGDT----VLGGGWIEKA 365 >gi|170718124|ref|YP_001785155.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus somnus 2336] gi|205816854|sp|B0UWF2|MNMA_HAES2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|168826253|gb|ACA31624.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus somnus 2336] Length = 383 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 125/394 (31%), Positives = 212/394 (53%), Gaps = 29/394 (7%) Query: 5 EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64 + +L +L++ KN K +V+ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 9 KLPKLTALEIAKNSK-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD-- 65 Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ + Sbjct: 66 -YCTAANDLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEI 124 Query: 125 KFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183 KF L LGAD +ATGHY+R D + + R +D +DQSYFL+ ++ Sbjct: 125 KFKAFLEYAVEDLGADYIATGHYVRRS-----DVNGQTKLLRGLDSNKDQSYFLYTLSKD 179 Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243 Q+ FP+G+++K VR +A ++GL A+K DS ICF+ + K+ D ++R A G Sbjct: 180 QVAQSLFPVGEIEKPIVRAIAGDLGLITAEKKDSTGICFIGERKFKDFLERFLP--AQPG 237 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---R 295 +I ++G+++G+H+G++ YT+GQR+GLG+ +P +VV D ++ ++V Sbjct: 238 EIRMVDGKVIGKHDGLMYYTLGQRKGLGIGGVKGLSEDPFYVVDKDLINNVLVVAQGNDN 297 Query: 296 ESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEK 354 +L + ++ W+ + +C VK R Q V + NDD + V F++ Sbjct: 298 SALLSQGLMATQLYWID----RLPIRQNLRCTVKTRYRQKDVACEVIPINDDCIEVRFDE 353 Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388 ++ V GQ+ VFY + LGGG+I + Sbjct: 354 PQIAVTPGQSAVFYQGEV----CLGGGVIERQIK 383 >gi|251798335|ref|YP_003013066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paenibacillus sp. JDR-2] gi|247545961|gb|ACT02980.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paenibacillus sp. JDR-2] Length = 377 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 140/388 (36%), Positives = 199/388 (51%), Gaps = 25/388 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K+ ++ RVVV MSGGVDSSV A LLK+ GYDV+G+ ++ ++ + G C A +D Sbjct: 1 MVKSKQETRVVVGMSGGVDSSVTALLLKQQGYDVVGIFMKNWDD---TDEFGHCTAEEDA 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RRVCD I + +Y ++E+++ + V F Y G TP P V CNR +KF D L Sbjct: 58 EDVRRVCDQIGIPYYTVNFEKQYFDKVFTYFLDEYKRGRTPNPDVMCNREIKFGDFLKKA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +LGAD LATGHY R +DG+ R + R +D +DQ+YFL A Q+QL FP+G Sbjct: 118 NELGADYLATGHYARVERN--EDGETR--LLRGVDGNKDQTYFLSALNQKQLEKAMFPIG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252 + K VR +A E GL A K DS +CF+ + + + + A GD+V + +G++ Sbjct: 174 HLPKPEVRRIAEEAGLYTAKKKDSTGVCFIGERNFKEFLSGYLP--ARPGDMVDIRSGEV 231 Query: 253 LGRHNGIINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 GRH+G++ YT+GQR+ G GEP FV D + + V SL + Sbjct: 232 KGRHDGLMYYTLGQRQGLGIGGSGNGEPWFVADKDLERNILYVVQGESHPSLYSTGLTAS 291 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365 +NW+ E F+C K R Q V V D V F+ + + GQA Sbjct: 292 GMNWIAPLRPE----GTFRCTAKFRYRQPDQGVSVTLHTDGTAEVVFDYPQKAITPGQAV 347 Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVE 393 V Y D L GG I + D Sbjct: 348 VLYDGDV----CLAGGTIDIVHKIDQAA 371 >gi|209695634|ref|YP_002263563.1| tRNA-specific 2-thiouridylase MnmA [Aliivibrio salmonicida LFI1238] gi|208009586|emb|CAQ79882.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aliivibrio salmonicida LFI1238] Length = 374 Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats. Identities = 119/382 (31%), Positives = 195/382 (51%), Gaps = 27/382 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A +D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L + Sbjct: 60 QAVCDKLGIHLHTINFAAEYWDNVFEYFLEEYKAGRTPNPDILCNKEIKFKAFLEFADEV 119 Query: 136 LGADVLATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 L AD +A GHY+R +D + M R +D +DQSYFL+ + +Q+ FP+G Sbjct: 120 LDADFIAMGHYVRRTFPTAEDIANGAKPQMLRGLDSNKDQSYFLYTLSSEQVARSLFPVG 179 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 D++K VR +A+E L A K DS ICF+ + K+ + + + A G+I G+++ Sbjct: 180 DLEKPEVRRIAQEQDLITAKKKDSTGICFIGERKFTEFLGKYLP--AQPGNIETPEGKVI 237 Query: 254 GRHNGIINYTIGQRRGLGVAM-------GEPLFVVYLDKNSSRV--IVGP-RESLEVHRI 303 G+H G++ +T+GQR+GL + +P FV D + + + G L+ + Sbjct: 238 GQHQGLMYHTLGQRKGLHIGGSKGGGGNEDPWFVGEKDLKRNVLIAVQGHDHPLLKSQGL 297 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASG 362 +++W+ A+ C VK R Q +P + DD + V F + ++ V G Sbjct: 298 LASQLDWVD----RTAIKAPLSCTVKTRYRQTDIPCTIIPIDDENIKVIFNEPQIAVTPG 353 Query: 363 QACVFYTSDSNEARVLGGGIIS 384 Q+ VFY+ + LGGGII Sbjct: 354 QSAVFYSGEI----CLGGGIIE 371 >gi|307553134|gb|ADN45909.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli ABU 83972] Length = 368 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 195/374 (52%), Gaps = 28/374 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VC Sbjct: 6 KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L LGAD Sbjct: 63 DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++GL A K DS ICF+ + K+ + R A G I+ ++G +G H G+ Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFRKFLGRYLP--AQPGKIITVDGDEIGEHQGL 235 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +T+GQR+GLG+ EP +VV D ++ +IV L + ++++W+ Sbjct: 236 MYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWV 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTS 370 + +C VK R Q +P V+ D D + V F++ V GQ+ VFY Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDADRIEVIFDEPVAAVTPGQSAVFYNG 351 Query: 371 DSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 EV----CLGGGIIE 361 >gi|209884347|ref|YP_002288204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oligotropha carboxidovorans OM5] gi|229486419|sp|B6JCC3|MNMA_OLICO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|209872543|gb|ACI92339.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oligotropha carboxidovorans OM5] Length = 393 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 212/381 (55%), Positives = 269/381 (70%), Gaps = 4/381 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL+ P RVVVAMSGGVDSS AALLK +GYDVIG+TLQLY+ +A+ RKG+CC Sbjct: 2 LNSLDLEGPPSSTRVVVAMSGGVDSSTTAALLKAEGYDVIGITLQLYDHGEATHRKGACC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V + I + HYV DYE RFR +VI FA SYA GETP+PC++CNR+VKF D Sbjct: 62 AGQDIHDARDVAERIGIPHYVLDYESRFRESVIDRFAESYALGETPVPCIECNRSVKFRD 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGA LATGHY+ SR R M D +RDQSYFLFATTQ QL L Sbjct: 122 LLTTAQELGAQALATGHYVASRRQPD----GSRAMVCAADADRDQSYFLFATTQDQLNHL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K R+LAR L +A+K DSQDICFV G+Y DV++R+ L GDIV L Sbjct: 178 RFPLGDMTKAQTRELARRFDLPVAEKHDSQDICFVPTGRYTDVIERMRPNAMLPGDIVDL 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 G++LG H GI N+T+GQRRG+G+A PL+VV LD S +VIVGPR +L + I LR+I Sbjct: 238 RGRVLGHHQGIANFTVGQRRGIGIAASMPLYVVALDAASRQVIVGPRAALRKNLITLRDI 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GDG F+D +G ++K+RS++ P P ++ N D V+ E GV+ GQACVFY Sbjct: 298 NWIGDGTFDDVAREGRDLYIKVRSTRPPQPAHLRMNGDHCEVELFAGEEGVSPGQACVFY 357 Query: 369 TSDSNEARVLGGGIISGSKRS 389 + + +ARVLGGG I+ + + Sbjct: 358 DAPTGQARVLGGGFITHASNN 378 >gi|312109803|ref|YP_003988119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus sp. Y4.1MC1] gi|311214904|gb|ADP73508.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus sp. Y4.1MC1] Length = 370 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 135/387 (34%), Positives = 200/387 (51%), Gaps = 25/387 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K RVVV MSGGVDSSV A LLK++GYDVIGV ++ ++ + G C A +D D +R Sbjct: 2 KKKRVVVGMSGGVDSSVAAYLLKQEGYDVIGVFMKNWDD---TNDDGVCTATEDYEDVKR 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + +Y ++E+ + + V F G TP P V CN +KF + L A Sbjct: 59 VANQLGIPYYSVNFEKEYWDRVFTYFMDELKRGRTPNPDVLCNTEIKFKAFVDYALSLDA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R G + + R DL +DQ+YFL T++ L + FPLG++ K+ Sbjct: 119 DYIATGHYARIRRENG-----QVTLLRGKDLNKDQTYFLSQLTEKHLAKVLFPLGELTKD 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A+E+ L A+K DS ICF+ + + +K A G+I L+G++LG H+G Sbjct: 174 EVRKIAKELNLVTANKKDSTGICFIGERNFKRFLKNFLP--AQPGEIRSLDGEVLGTHDG 231 Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 ++ YTIGQR+ G GEP +VV D ++ ++V +L + I+++ Sbjct: 232 LMYYTIGQRKGLGIGGKGTGEPWYVVDKDLENNVLLVAQGKNHPALFSTGLIASNISFIN 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 D F C K R Q+ V V +G V+FEK V GQ VFY +D Sbjct: 292 G----DVRPRTFACTAKFRYRQEDQKVTVHVRPNGTALVEFEKPVKAVTPGQVAVFYDND 347 Query: 372 SNEARVLGGGIISGSKRSDAVEESLLS 398 LG +I + DA ++ S Sbjct: 348 V----CLGSAVIDEVIKMDAANATIAS 370 >gi|88860122|ref|ZP_01134761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudoalteromonas tunicata D2] gi|88818116|gb|EAR27932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudoalteromonas tunicata D2] Length = 366 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 123/382 (32%), Positives = 195/382 (51%), Gaps = 28/382 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +++V+V MSGGVDSSV A LL + GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSNIKVIVGMSGGVDSSVSAYLLMQQGYQVEGLFMKNWEEDDTDE---YCAAADDLKDA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VC+ + + + ++ + + V F Y AG TP P + CN+ +KF L + Sbjct: 60 QAVCEKLGIPLHTVNFASEYWDNVFQYFLEEYKAGRTPNPDIMCNKEIKFKAFLQFAAEA 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +ATGHY+R L + +M R D +DQSYFL+ + + L FP+G++ Sbjct: 120 LNADFIATGHYVRRELRGD-----KYVMIRGDDDNKDQSYFLYTLSHEHLAQTLFPVGEI 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E L DK DS ICF+ + K+ D +++ A G I +G ++G Sbjct: 175 EKPEVRRIAEEQNLITHDKKDSTGICFIGERKFKDFLQKFLP--AQPGKIEDTDGNVVGD 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GL + GEP +VV D + ++VG L + + + Sbjct: 233 HEGLMYHTLGQRKGLLIGGMKEGSGEPWYVVDKDLIRNVLVVGQGKDHPRLYSNGLMANQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 ++W+ +C VK R Q +P + DDG V F++ E V GQ+ V Sbjct: 293 LHWVD----RVGPKTTLRCTVKTRYRQTDLPCTLLVGDDGYARVLFDQPEKAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIISGSKR 388 FY ++ LGGGII + Sbjct: 349 FYLNEV----CLGGGIIDSVIK 366 >gi|331006794|ref|ZP_08330060.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma proteobacterium IMCC1989] gi|330419412|gb|EGG93812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma proteobacterium IMCC1989] Length = 426 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 130/380 (34%), Positives = 208/380 (54%), Gaps = 26/380 (6%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P++ RV+V MSGGVDSSV A LL++ GY V G+ ++ ++ ++ C A D+ DA+ Sbjct: 58 PQETRVMVGMSGGVDSSVTALLLQQQGYLVEGLFMKNWDEDDGTE---YCSAKDDLADAQ 114 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RVCDT+ ++ + ++ + + V F Y AG TP P + CNR +KF L + LG Sbjct: 115 RVCDTLGITLHTANFAAEYWDNVFEYFLDEYKAGRTPNPDILCNREIKFKVFLDYAQVLG 174 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD++ATGHY+R Y ++ + + D +DQSYFL A +QL FP+G+++K Sbjct: 175 ADMIATGHYVRRDDYF-NNSAGSTRLLKGCDNNKDQSYFLHAVGGEQLAKTLFPVGELEK 233 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 +VR LA + L +K DS ICF+ + ++ D +++ A EG+IV GQ++G+H Sbjct: 234 PAVRLLAEQHNLITHNKKDSTGICFIGERRFKDFLEQYLP--AQEGEIVTDKGQVIGKHA 291 Query: 258 GIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 G++ +T+GQR+GLG+ P +VV D + +++IV L R+ +++ Sbjct: 292 GLMYHTMGQRQGLGIGGVKNAPDAPWYVVDKDLDKNQLIVVQGDQHPLLYHQRLTATDMH 351 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR----NDDGVYVDFEKSEVGVASGQAC 365 W+ +DAV F+C KIR Q V ND + V F++ + V GQ+ Sbjct: 352 WINPSD-QDAV---FRCHAKIRYRQADQACEVTVSRDNNDSSISVIFDEPQRAVTPGQSI 407 Query: 366 VFYTSDSNEARVLGGGIISG 385 V Y + LGG +I+ Sbjct: 408 VLYDGE----HCLGGAVIAS 423 >gi|313884882|ref|ZP_07818634.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eremococcus coleocola ACS-139-V-Col8] gi|312619573|gb|EFR31010.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eremococcus coleocola ACS-139-V-Col8] Length = 374 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 135/378 (35%), Positives = 192/378 (50%), Gaps = 26/378 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K RV+V MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 4 KKARVIVGMSGGVDSSVAALLLKEAGYDVIGLFMKNWDD---TDENGVCTATEDYKDVAL 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGA Sbjct: 61 VAEKIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMDLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +A GHY + V D + R +D +DQ+YFL +Q QL FPLG ++K Sbjct: 121 DYVAMGHYAQ----VETDADGTVHLLRGLDDNKDQTYFLSQLSQDQLKKSLFPLGHLQKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A + GL A K DS +CF+ + + + + G +V L+GQI+G H G Sbjct: 177 QVREIAEKAGLATAKKKDSTGVCFIGERNFNEFLSNYLPN--KSGKMVTLDGQIMGDHAG 234 Query: 259 IINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWL 311 ++ YTIGQR GLG+ EP FVV D ++ + VG +L + +I++ Sbjct: 235 LMYYTIGQRHGLGIGGGGESNEPWFVVGKDLETNTLYVGQGYHHPNLYSDYLDASQIHFT 294 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVFYT 369 D + F+C K R Q V V V N+D V F+ + GQA VFY Sbjct: 295 VDRD----MPQEFECTAKFRYRQKDVKVKVVLNEDQESGRVYFQDPVRAITPGQAVVFYD 350 Query: 370 SDSNEARVLGGGIISGSK 387 LGGGII + Sbjct: 351 G----LECLGGGIIDAAY 364 >gi|182679942|ref|YP_001834088.1| tRNA-specific 2-thiouridylase MnmA [Beijerinckia indica subsp. indica ATCC 9039] gi|205813049|sp|B2IBH3|MNMA_BEII9 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|182635825|gb|ACB96599.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Beijerinckia indica subsp. indica ATCC 9039] Length = 431 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 217/392 (55%), Positives = 284/392 (72%), Gaps = 9/392 (2%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSL L K P RVVVAMSGGVDSSVVAALLKR+GY+VIGVTLQLY+ +A RKG+CC Sbjct: 18 LNSLGLPKPPALTRVVVAMSGGVDSSVVAALLKREGYEVIGVTLQLYDHGEAVHRKGACC 77 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DAR+V D + + HYV DYEERFR VI PFA SYA GETP+PCV CN +KF+D Sbjct: 78 AGQDIQDARQVADQLGIPHYVLDYEERFRRKVIDPFAQSYATGETPIPCVSCNSEIKFAD 137 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 L + LGADVLATGHY+ S+ + R + R +D RDQSYFLFATT QL L Sbjct: 138 LFETAQHLGADVLATGHYVSSK----AEADGGRALYRSLDSSRDQSYFLFATTNAQLELL 193 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGD+ K VR +AR++GL +ADK+DSQDICFV GKY DV++R++ G + G+I+H+ Sbjct: 194 RFPLGDLAKPDVRQMARQLGLVVADKADSQDICFVPSGKYSDVIERLSPGAVVPGEILHV 253 Query: 249 NGQILGRHNGIINYTIGQRR-----GLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 +G++LGRH+G+I+YTIGQRR +G GEPL+V+ LD ++VIVGPR++L R+ Sbjct: 254 DGRVLGRHSGVIHYTIGQRRGLGLGAVGAGAGEPLYVIRLDAAKAQVIVGPRQALATRRV 313 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 +LR +NW+G G +D G + FV++RS++ P+P F+ ++ ++VDF E GV+ GQ Sbjct: 314 HLRGVNWIGPGSLQDMDEHGLEIFVQVRSTRAPIPGFLHAHESEIWVDFALDEDGVSPGQ 373 Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAVEES 395 ACVFY +D ARVLGGG IS ++ + + E Sbjct: 374 ACVFYENDQPRARVLGGGFISATESALQMREM 405 >gi|20807693|ref|NP_622864.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Thermoanaerobacter tengcongensis MB4] gi|24638309|sp|Q8RAH7|MNMA1_THETN RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 gi|20516242|gb|AAM24468.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Thermoanaerobacter tengcongensis MB4] Length = 364 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 146/372 (39%), Positives = 215/372 (57%), Gaps = 14/372 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDAR 77 + RVVV MSGGVDSSV A LLK G++VIGVT++++ KA SCC+ + ++DA+ Sbjct: 4 NNRVVVGMSGGVDSSVTAYLLKEQGFEVIGVTMRVWVDPYGKARDDDKSCCSLKAIHDAK 63 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 +V + + + HY + E F + ++ F Y G TP PCV CNR +KF DLL +LG Sbjct: 64 KVAEILGIPHYTVNLSEVFYDKIVKYFIDEYLKGRTPNPCVFCNRFIKFGDLLEKAHELG 123 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A +ATGHY+R D+ ++R ++ + +D ++DQSY L+ TQ+QL FPLG+ K Sbjct: 124 AYYIATGHYVRKEY---DEDRKRYLLKKGLDFKKDQSYMLYRLTQEQLKHALFPLGNYTK 180 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 E VR LA ++GL +ADK +SQ+ICF+ Y +KR G+ ++G LG H Sbjct: 181 EEVRALAEKIGLPVADKRESQEICFIPDNDYKAFIKRQIKKDVKPGEFRDIHGNFLGYHK 240 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GIINYTIGQR+GLG++ PL+VV +D ++ VIVG +E + + N++ Sbjct: 241 GIINYTIGQRKGLGLSSDRPLYVVDIDPENNVVIVGHQEDVWGEELISSNNNFISI---- 296 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + + K KIR + ++ DD V V F + + + GQ+ VFY D Sbjct: 297 EKLEEEIKVTAKIRYTAKEDEAIIKPYGDDKVLVRFLRPQRAITPGQSVVFYDGDV---- 352 Query: 377 VLGGGIISGSKR 388 V+GGGII R Sbjct: 353 VVGGGIIEKKVR 364 >gi|295402096|ref|ZP_06812056.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus thermoglucosidasius C56-YS93] gi|294975878|gb|EFG51496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacillus thermoglucosidasius C56-YS93] Length = 370 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 135/387 (34%), Positives = 200/387 (51%), Gaps = 25/387 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K RVVV MSGGVDSSV A LLK++GYDVIGV ++ ++ + G C A +D D +R Sbjct: 2 KKKRVVVGMSGGVDSSVAAYLLKQEGYDVIGVFMKNWDD---TNDDGVCTATEDYEDVKR 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + +Y ++E+ + + V F G TP P V CN +KF + L A Sbjct: 59 VANQLGIPYYSVNFEKEYWDRVFTYFMDELKRGRTPNPDVLCNTEIKFKAFVDYALSLDA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R G + + R DL +DQ+YFL T++ L + FPLG++ K+ Sbjct: 119 DYIATGHYARIRRENG-----QVTLLRGKDLNKDQTYFLSQLTEKHLAKVLFPLGELTKD 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A+E+ L A+K DS ICF+ + + +K A G+I L+G++LG H+G Sbjct: 174 EVRKIAKELNLVTANKKDSTGICFIGERNFKRFLKNFLP--AQPGEIRSLDGEVLGTHDG 231 Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 ++ YTIGQR+ G GEP +VV D ++ ++V +L + I+++ Sbjct: 232 LMYYTIGQRKGLGIGGKGTGEPWYVVDKDLENNVLLVAQGKNHPALFSTGLIASNISFIN 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 D F C K R Q+ V V +G V+FEK V GQ VFY +D Sbjct: 292 G----DVRPCTFACTAKFRYRQEDQKVTVHVRPNGTALVEFEKPVKAVTPGQVAVFYDND 347 Query: 372 SNEARVLGGGIISGSKRSDAVEESLLS 398 LG +I + DA ++ S Sbjct: 348 V----CLGSAVIDEVIKMDAANATIAS 370 >gi|170751444|ref|YP_001757704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacterium radiotolerans JCM 2831] gi|205816882|sp|B1LV15|MNMA_METRJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|170657966|gb|ACB27021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacterium radiotolerans JCM 2831] Length = 384 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 213/389 (54%), Positives = 273/389 (70%), Gaps = 10/389 (2%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +N+LDL K P + RVVVAMSGGVDSSVVA LLKR G+DV+GVTLQLY+ AS RKG+CC Sbjct: 1 MNALDLPKAPHETRVVVAMSGGVDSSVVAGLLKRQGFDVVGVTLQLYDHGAASHRKGACC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR + + + HYV DYE+RFR+ VI FA SY AGETP+PCV+CNRTVKF D Sbjct: 61 AGQDIHDARAAAEHLGIPHYVLDYEDRFRDEVIEKFAESYLAGETPIPCVECNRTVKFRD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL + R L AD LATGHY+ SR G R + R +D RDQSYFL+ATT +QL L Sbjct: 121 LLGLARDLDADALATGHYVASRALPG----GGRALHRALDPARDQSYFLYATTAEQLDFL 176 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG+M+K R LA+E+GL +A+K DSQDICFV QG+Y DV+ R+ A G+IV L Sbjct: 177 RFPLGEMEKTETRALAKELGLSLAEKPDSQDICFVPQGRYSDVIARLRPDAARPGEIVDL 236 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G +LGRH+GI++YT+GQR+GLG++ EPL+VV L+ +++RV+VGPR +L RI L ++ Sbjct: 237 DGHVLGRHDGIVHYTVGQRKGLGLSGPEPLYVVRLEPDAARVVVGPRTALATTRIRLSDL 296 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVF 367 NWLG+G E V V++RS++ P P + DG V V + E GV+ GQAC Sbjct: 297 NWLGEGPAE--AVRDLPVAVRVRSTRPPRPATLTVGPDGAVEVVLAEPEDGVSPGQACAI 354 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396 Y D ARVLGGG I +R DA+ Sbjct: 355 YADDGPRARVLGGGTI---RRVDALSARP 380 >gi|293414424|ref|ZP_06657073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli B185] gi|291434482|gb|EFF07455.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli B185] Length = 368 Score = 488 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 196/374 (52%), Gaps = 28/374 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VC Sbjct: 6 KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L LGAD Sbjct: 63 DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 123 YIATGHYVRRV-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G+ Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +T+GQR+GLG+ EP +VV D ++ +IV L + ++++W+ Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWV 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370 + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNG 351 Query: 371 DSNEARVLGGGIIS 384 LGGGII Sbjct: 352 KV----CLGGGIIE 361 >gi|170727050|ref|YP_001761076.1| tRNA-specific 2-thiouridylase MnmA [Shewanella woodyi ATCC 51908] gi|205816913|sp|B1KID0|MNMA_SHEWM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|169812397|gb|ACA86981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella woodyi ATCC 51908] Length = 377 Score = 488 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 128/398 (32%), Positives = 202/398 (50%), Gaps = 32/398 (8%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + E T L + + +V+V MSGGVDSSV A LL + GY V G+ ++ + Sbjct: 1 MAIIEPTA----ALIEPTANKKVIVGMSGGVDSSVSAYLLLKQGYQVEGLFMKNWEEDDT 56 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 57 DE---YCAAADDLKDAQAVCDKLGIKLHTVNFASEYWDNVFEYFLAEYKAGRTPNPDIIC 113 Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L L AD +A GHY+R D + M R +D +DQSYFL+ Sbjct: 114 NKEIKFKAFLEFADDILDADYIAMGHYVRRS-----DDSGQSQMLRGIDGNKDQSYFLYT 168 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VR++A+EMGL DK DS ICF+ + K+ D + Sbjct: 169 LSHEQVSRSLFPVGELEKSEVREIAKEMGLITHDKKDSTGICFIGERKFTDFLSTFLP-- 226 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP 294 A G+I G+++G H G++ +T+GQR+GLG+ +P +VV + + + ++VG Sbjct: 227 AQPGNIETAEGEVIGTHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKEMDRNVLVVGQ 286 Query: 295 ---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYV 350 L Y +++W+ +G K VK R Q V + + +D V V Sbjct: 287 GGNHPRLMSTGFYADQLHWVD----RIGPDNGAKITVKTRYRQRDVACSLHYDGEDRVKV 342 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388 F++ V GQ+ VFY ++ LGGGII R Sbjct: 343 LFDEPVAAVTPGQSAVFYDAEV----CLGGGIIDSLIR 376 >gi|294636777|ref|ZP_06715115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Edwardsiella tarda ATCC 23685] gi|291089992|gb|EFE22553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Edwardsiella tarda ATCC 23685] Length = 376 Score = 488 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 126/386 (32%), Positives = 198/386 (51%), Gaps = 28/386 (7%) Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69 + L + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A Sbjct: 5 DCESLMSDNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDNDE---YCSA 61 Query: 70 GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 D+ DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF Sbjct: 62 AADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLQEYRAGRTPNPDILCNKEIKFKAF 121 Query: 130 LSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 L LGAD +ATGHY+R R D + R +D +DQSYFL+ + QQ+ Sbjct: 122 LEFAAEDLGADYIATGHYVRRR-----DIDGTTQLLRGVDANKDQSYFLYTLSHQQVAQS 176 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 FP+G+++K VR +A ++ L A K DS ICF+ + K+ D + R A G I+ + Sbjct: 177 LFPVGELEKPEVRRIATQLDLATAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITV 234 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEV 300 +GQ +G H G++ +T+GQR+GLG+ EP +VV D ++ ++V L Sbjct: 235 DGQEIGEHQGLMYHTLGQRKGLGIGGTKEGNEEPWYVVDKDVANNVLLVAQGHDHPRLFS 294 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGV 359 + + ++++W+ + +C VK R Q +P V DD + V F++ V Sbjct: 295 NGLIAQQLHWVD----RRPLTAELRCTVKTRYRQADIPCRVIPIDDTRIEVRFDQPVAAV 350 Query: 360 ASGQACVFYTSDSNEARVLGGGIISG 385 GQ+ VFY + LGGGII Sbjct: 351 TPGQSAVFYQDEV----CLGGGIIEA 372 >gi|222032885|emb|CAP75625.1| hypothetical protein LF82_1359 [Escherichia coli LF82] gi|312945695|gb|ADR26522.1| tRNA-specific 2-thiouridylase MnmA [Escherichia coli O83:H1 str. NRG 857C] Length = 368 Score = 488 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 195/374 (52%), Gaps = 28/374 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VC Sbjct: 6 KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L LGAD Sbjct: 63 DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G+ Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +T+GQR+GLG+ EP +VV D ++ +IV L + +++W+ Sbjct: 236 MYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIALQLHWV 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTS 370 + +C VK R Q +P V+ D D + V F++ V GQ+ VFY Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDADRIEVIFDEPVAAVTPGQSAVFYNG 351 Query: 371 DSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 EV----CLGGGIIE 361 >gi|257453848|ref|ZP_05619126.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enhydrobacter aerosaccus SK60] gi|257448775|gb|EEV23740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enhydrobacter aerosaccus SK60] Length = 391 Score = 488 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 130/391 (33%), Positives = 205/391 (52%), Gaps = 24/391 (6%) Query: 6 ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65 +T +N D+ +P RV+V MSGGVDSSV A LLK+ G+DV G+ ++ + ++ Sbjct: 4 STAVNLSDIA-SPAQTRVIVGMSGGVDSSVTAVLLKQAGFDVEGLFMKNWEEDDGTE--- 59 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 C A D+ DA+ V D I + + ++ + + V F + Y+AG TP P + CN+ VK Sbjct: 60 YCTAMTDLADAQAVADKIGIKLHTANFAMEYWDRVFEHFLAEYSAGRTPNPDILCNKEVK 119 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F L LGAD +ATGHY R D + + R +D +DQSYFL A ++ Sbjct: 120 FKAFLDYALTLGADYIATGHYARRGFS---DETGKAPLLRGLDNNKDQSYFLHAVAGDKI 176 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+G ++K VR +A + L A K DS ICF+ + ++ D +++ A +GDI Sbjct: 177 AKTLFPVGALEKPEVRRIAEQYDLATAKKKDSTGICFIGERRFKDFLQQYLP--AQKGDI 234 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RES 297 +G+ +G H+G++ YT+GQR G+G+ P FV++ D +++R+IVG Sbjct: 235 YTDDGKKIGTHDGLMYYTLGQRGGIGIGGVKDRDEAPWFVLHKDLDNNRLIVGQGHDHPM 294 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEK 354 L+ + +++W+ D + G++C K R Q V D + V F++ Sbjct: 295 LQSTELTAYKLDWVVDAPAQLFTAQGYRCTAKTRYRQPDQACTVFALDETGDTIKVVFDE 354 Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGIISG 385 + V GQ+CVFY D LGGG+I Sbjct: 355 PQRAVTPGQSCVFYQDDI----CLGGGVIET 381 >gi|56963351|ref|YP_175082.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Bacillus clausii KSM-K16] gi|81366419|sp|Q5WHN4|MNMA_BACSK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|56909594|dbj|BAD64121.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Bacillus clausii KSM-K16] Length = 364 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 135/381 (35%), Positives = 205/381 (53%), Gaps = 23/381 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K +D RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ S G C A +D D Sbjct: 2 KKREDTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---SNDSGFCSATEDYED 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 RV + + +Y ++E+++ + V F Y AG TP P V CN+ +KF L+ Sbjct: 59 VERVAQQLGIPYYAVNFEKQYWDKVFTYFLEEYKAGRTPNPDVMCNKEIKFKAFLNHAIS 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY + + G+ + + D +DQ+YFL A +Q+QL + FPLG + Sbjct: 119 LGADYVATGHYAQLQELDGE-----YRLIKGADANKDQTYFLNALSQKQLSKVMFPLGHL 173 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E L A K DS ICF+ + + + ++ A G + ++G G+ Sbjct: 174 QKAEVRKIAAEAELATATKKDSTGICFIGERDFKEFLQTFLP--AQPGRMETMDGIDKGQ 231 Query: 256 HNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWL 311 H+G++ YT+GQR+GLG+ GEP FV+ D + +IVG L ++ ++NW+ Sbjct: 232 HDGLMYYTLGQRQGLGIGGAGEPWFVIDKDLERNVLIVGQGYHHPGLYSDGLWATDMNWI 291 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 ++ F C K R Q+ V V +DG ++ F++ + + GQA V Y Sbjct: 292 A----KEERTSPFTCKAKFRYRQEDQGVTVFPKEDGRAFIQFDQPQRAITPGQAVVLYEG 347 Query: 371 DSNEARVLGGGIISGSKRSDA 391 D R +GGG+I R +A Sbjct: 348 D----RCIGGGVIDKIHRENA 364 >gi|220925891|ref|YP_002501193.1| tRNA-specific 2-thiouridylase MnmA [Methylobacterium nodulans ORS 2060] gi|254811453|sp|B8IU32|MNMA_METNO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|219950498|gb|ACL60890.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacterium nodulans ORS 2060] Length = 382 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 215/388 (55%), Positives = 270/388 (69%), Gaps = 11/388 (2%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLDL K P+D RVVVAMSGGVDSSVVA LLKR GYDV+G+TLQLY+ A+ R+G+CC Sbjct: 1 MNSLDLPKAPQDTRVVVAMSGGVDSSVVAGLLKRQGYDVVGITLQLYDHGAATHRRGACC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DARR +T+ + HYV DYE+RFR AVI FA SY GETP+PCV+CNR++KF D Sbjct: 61 AGQDIHDARRAAETLGIPHYVLDYEDRFREAVIDRFADSYIHGETPIPCVECNRSIKFRD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ LGAD LATGHY+ SR G R + R +D RDQSYFL+ATT +QL L Sbjct: 121 LLATALDLGADALATGHYVASRPRPG----GSRALYRALDPARDQSYFLYATTAEQLDVL 176 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG++ K+ R LARE GL +ADK DSQDICFV QG+Y DV+ R+ G+IVHL Sbjct: 177 RFPLGELPKDETRRLAREFGLSVADKPDSQDICFVPQGRYQDVIARLRPDSVRPGEIVHL 236 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G+ LGRH+GII +T+GQRRGL +A GEPL+VV LD ++RV+VGPRE+L I L E Sbjct: 237 DGRTLGRHDGIIGFTVGQRRGLKLATGEPLYVVRLDPETARVVVGPREALATSVIRLAET 296 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACV 366 NWLGD + +DG V++RS+++P P ++ R V E GV+ GQAC Sbjct: 297 NWLGDEPLTE--LDGMPVAVRVRSTREPRPATLRWNRAASCAEVMLATPEDGVSPGQACA 354 Query: 367 FYTSDSNEARVLGGGII---SGSKRSDA 391 Y + ARVLGGG I S+R A Sbjct: 355 IYADEGPRARVLGGGTILRVEASRREAA 382 >gi|167553799|ref|ZP_02347544.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205321840|gb|EDZ09679.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 368 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 124/381 (32%), Positives = 200/381 (52%), Gaps = 30/381 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + ++PK +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ Sbjct: 1 MSESPK--KVIVGMSGGVDSSVSAWLLQQLGYQVEGLFMKNWEEDDGEE---YCTAAADL 55 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 56 ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115 Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 LGAD +ATGHY+R D + + R +D +DQSYFL+ +Q+ FP+ Sbjct: 116 AEDLGADYIATGHYVRRA-----DVNGKSRLLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR +A ++GL A K DS ICF+ + K+ D + R A G I+ ++G Sbjct: 171 GELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGKIITVDGDE 228 Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304 +G H G++ +T+GQR+GLG+ +P +VV D ++ +IV L + Sbjct: 229 IGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKDVENNVLIVAQGHEHPRLMSVGLI 288 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363 ++++W+ + +C VK R Q +P + +DD + V F++ V GQ Sbjct: 289 AQQLHWVD----REPFTGTLRCTVKTRYRQTDIPCTINALDDDRIEVIFDEPVAAVTPGQ 344 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY+ + LGGGII Sbjct: 345 SAVFYSGEV----CLGGGIIE 361 >gi|296388914|ref|ZP_06878389.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas aeruginosa PAb1] gi|313107663|ref|ZP_07793846.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas aeruginosa 39016] gi|310880348|gb|EFQ38942.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudomonas aeruginosa 39016] Length = 363 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 124/375 (33%), Positives = 196/375 (52%), Gaps = 26/375 (6%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83 +V MSGGVDSSV A LL + GY V G+ ++ ++ ++ C A +D+ DA+ VCD I Sbjct: 2 IVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWDEDDGTE---YCTAREDLADAQAVCDRI 58 Query: 84 NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143 + + ++ + + V F + Y AG TP P + CNR +KF L LGAD++AT Sbjct: 59 GIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLIAT 118 Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 GHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K VR + Sbjct: 119 GHYVRRR-----DRDGRTELLKGLDPNKDQSYFLHAVGGEQIARSLFPVGELEKPEVRAI 173 Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263 A + GL A K DS ICF+ + ++ D +K+ A GDI G+++GRH+G++ +T Sbjct: 174 AEKHGLATAKKKDSTGICFIGERRFTDFLKQYLP--AQPGDIETTEGKVIGRHSGLMYHT 231 Query: 264 IGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315 IGQR+GLG+ +P +V+ D + ++VG L + I W+ Sbjct: 232 IGQRQGLGIGGLKEAGDDPWYVLGKDLQRNVLLVGQGNDHPLLFSRALLASRIYWVNPVE 291 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 E + K+R Q +++ +G F++ + V GQ+ VFY D Sbjct: 292 LERP----RRLRAKVRYRQSDQDCVLEKTAEGYRAVFDEPQRAVTPGQSVVFYDGDV--- 344 Query: 376 RVLGGGIISGSKRSD 390 LGGG+I ++ D Sbjct: 345 -CLGGGVIETAEAWD 358 >gi|163751230|ref|ZP_02158458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella benthica KT99] gi|161328944|gb|EDQ00018.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella benthica KT99] Length = 376 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 121/388 (31%), Positives = 198/388 (51%), Gaps = 32/388 (8%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A D+ Sbjct: 6 PTANSSKKVIVGMSGGVDSSVSAYLLLKQGYRVEGLFMKNWEEDDTDE---YCAAADDLK 62 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 63 DAQAVCDKLGIKLHTVNFAAEYWDKVFEYFLAEYKAGRTPNPDIICNKEIKFKAFLEFAD 122 Query: 135 Q-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + L AD +A GHY+R D + M R +D +DQSYFL+ + +Q+ FP+G Sbjct: 123 EILDADYIAMGHYVRRC-----DETGQSRMLRGVDGNKDQSYFLYTLSHEQIARSLFPVG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR++A+EMGL DK DS ICF+ + K+ D ++ A G+I G+++ Sbjct: 178 ELEKSEVREIAKEMGLITHDKKDSTGICFIGERKFTDFLRTFLP--AQPGNIETAEGEVI 235 Query: 254 GRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 G+H G++ +T+GQR+GLG+ +P +VV + + + ++VG L Y Sbjct: 236 GKHQGLMYHTLGQRKGLGIGGMKNSNDDPWYVVDKEMDRNVLVVGQGGTHPRLMSMGFYA 295 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-----QRNDDGVYVDFEKSEVGVA 360 +++W+ ++ + VK R Q V + + +D + V F++ V Sbjct: 296 DQLHWVD----RKGPINEARITVKTRYRQRDVACTLFLENNDKGEDTIRVLFDEPVAAVT 351 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKR 388 GQ+ VFY+ + LGGGII R Sbjct: 352 PGQSAVFYSDE----LCLGGGIIDSLIR 375 >gi|326794627|ref|YP_004312447.1| tRNA-specific 2-thiouridylase mnmA [Marinomonas mediterranea MMB-1] gi|326545391|gb|ADZ90611.1| tRNA-specific 2-thiouridylase mnmA [Marinomonas mediterranea MMB-1] Length = 371 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 121/381 (31%), Positives = 194/381 (50%), Gaps = 26/381 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++ + + +V+V MSGGVDSSV A LL + GY V G+ ++ ++ ++ C A + Sbjct: 1 MNSSEQNSNTKVIVGMSGGVDSSVSALLLMQQGYQVEGLFMKNWDEDDGTE---YCTAKE 57 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 58 DLADAQAVCDKLGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLE 117 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 L AD +ATGHY+R G D ++ + +D +DQSYFL+A + ++ FP Sbjct: 118 YAMALKADYIATGHYVRK----GFDENGNALLLKGLDNNKDQSYFLYAVGKGEIAKTFFP 173 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 +G+++K VR LA E L +K DS ICF+ + ++ D +++ A GDI L G Sbjct: 174 VGELEKPEVRRLAEEHDLITHNKKDSTGICFIGERRFKDFLEQYLP--AQPGDIETLEGD 231 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRI 303 +GRH+G++ +TIGQR+GLG+ EP +VV D + + V G SL + Sbjct: 232 KIGRHHGLMYHTIGQRQGLGIGGLSKYPDEPWYVVAKDLERNVLQVTQGGQHPSLYKTHL 291 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASG 362 +W+ + C K R Q + + D + V F + + + G Sbjct: 292 IADNFDWVA----REKPSLPLTCKAKCRYRQPDQDCTISELKDGRIEVSFSEPQRAITPG 347 Query: 363 QACVFYTSDSNEARVLGGGII 383 Q+ VFY ++ LGGGII Sbjct: 348 QSVVFYLDEN----CLGGGII 364 >gi|121535962|ref|ZP_01667756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermosinus carboxydivorans Nor1] gi|121305454|gb|EAX46402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermosinus carboxydivorans Nor1] Length = 364 Score = 488 bits (1256), Expect = e-135, Method: Composition-based stats. Identities = 151/372 (40%), Positives = 212/372 (56%), Gaps = 14/372 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDAR 77 RVVVAMSGGVDSS+ AALL GYDVIGVT+Q++ + + CC+ V DAR Sbjct: 4 KPRVVVAMSGGVDSSLTAALLVHQGYDVIGVTMQIWENDLPEIDPEHRGCCSLSAVNDAR 63 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV D + + +YV ++ E F+ V+ F YAAG+TP PC+ CNR VKF LL L Sbjct: 64 RVADKLGIPYYVLNFREMFQETVVDYFIREYAAGKTPNPCIACNRYVKFEGLLQKALALD 123 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A +ATGHY R D G+ R I+ + +D +DQSY L+ Q L PLG+ K Sbjct: 124 AQYVATGHYARIEY---DKGRGRYILRKGVDRTKDQSYALYHLNQHTLRHFLMPLGEYTK 180 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 R +AR+ GL +A+K DSQ+ICF+ Y ++ G+IV +G+ILGRH Sbjct: 181 VQTRQMARQFGLAVAEKPDSQEICFIPNDDYKSFLEEKAPETLRPGNIVDTHGRILGRHK 240 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 G+ YT+GQR+GLG+A+G+PL+VV LD + VIVG E + + ++N++ Sbjct: 241 GLPLYTVGQRKGLGIAVGKPLYVVALDYERNEVIVGSDEDVFASELIAEDLNFITV---- 296 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 D + + KIR S P + +G VYV F++ + + GQ+ VFY D+ Sbjct: 297 DKLASPLRVAAKIRYSAREAPATITPEREGAVYVRFDEPQRAITPGQSVVFYDGDT---- 352 Query: 377 VLGGGIISGSKR 388 V+GGGII + R Sbjct: 353 VVGGGIIRKAIR 364 >gi|299131958|ref|ZP_07025153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Afipia sp. 1NLS2] gi|298592095|gb|EFI52295.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Afipia sp. 1NLS2] Length = 393 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 213/378 (56%), Positives = 266/378 (70%), Gaps = 4/378 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL+ P RVVVAMSGGVDSS AALLK +GYDVIG+TLQLY+ A+ RKG+CC Sbjct: 2 LNSLDLEGPPSGTRVVVAMSGGVDSSTTAALLKAEGYDVIGITLQLYDHGAATHRKGACC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V + I + HYV DYE RFR +VI FA SY GETP+PC++CNR+VKF D Sbjct: 62 AGQDIHDARDVAERIGIPHYVLDYESRFRESVIDRFAESYVLGETPVPCIECNRSVKFRD 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R+LGA LATGHY+ SR R M D +RDQSYFLFATTQ QL DL Sbjct: 122 LLTTARELGAKALATGHYVASRRQAD----GSRAMVCAADADRDQSYFLFATTQDQLNDL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K R+LAR L +A+K DSQDICFV G+Y DV++R+ GDIV L Sbjct: 178 RFPLGDMTKTQTRELARRFDLPVAEKHDSQDICFVPTGRYTDVIERMKPNALQPGDIVDL 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 G++LG H GI+N+TIGQRRG+G+A EPL+VV LD + RVIVGPR +L I LR+I Sbjct: 238 RGRVLGHHQGIVNFTIGQRRGIGIAAAEPLYVVALDAAARRVIVGPRAALRKSVITLRDI 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GDG FE A +G ++K+RS++ P ++ N D V+ E G++ GQACVFY Sbjct: 298 NWIGDGSFERAATEGRDLYIKVRSTRPPQAAHLRMNGDHCEVELLAGEEGISPGQACVFY 357 Query: 369 TSDSNEARVLGGGIISGS 386 + + +ARVLGGG I+ + Sbjct: 358 DAPAGQARVLGGGFITHA 375 >gi|317047745|ref|YP_004115393.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pantoea sp. At-9b] gi|316949362|gb|ADU68837.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pantoea sp. At-9b] Length = 370 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 126/386 (32%), Positives = 198/386 (51%), Gaps = 28/386 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAADDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGIKLHKVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + D + + R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 120 LGADFIATGHYVRRQ-----DIDGQSRLLRGLDGNKDQSYFLYTLSHEQVAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++ L A K DS ICF+ + K+ D + R A G I ++G+I+G Sbjct: 175 EKPEVRRIAEQLDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGAIETVDGEIVGE 232 Query: 256 HNGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ + P +VV D +R+IV G L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGRKESNDDPWYVVDKDVARNRLIVAQGGDHPRLMSVGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACV 366 ++W+ + +C VK R Q +P + DD + V F++ V GQ+ V Sbjct: 293 LHWVD----RQPITAPLRCTVKTRYRQTDIPCEIIPHGDDRIEVRFDEPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAV 392 FY D LGGGII A Sbjct: 349 FYLGDV----CLGGGIIEQRLPWAAA 370 >gi|21911376|ref|NP_665644.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes MGAS315] gi|28896748|ref|NP_803098.1| tRNA-specific 2-thiouridylase MnmA [Streptococcus pyogenes SSI-1] gi|25091447|sp|Q8K5H5|MNMA_STRP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|21905592|gb|AAM80447.1| putative tRNA-(5-methylaminomethyl-2-thiouridylate) [Streptococcus pyogenes MGAS315] gi|28812002|dbj|BAC64931.1| putative tRNA-(5-methylaminomethyl-2- thiouridylate) [Streptococcus pyogenes SSI-1] Length = 373 Score = 487 bits (1255), Expect = e-135, Method: Composition-based stats. Identities = 132/382 (34%), Positives = 194/382 (50%), Gaps = 25/382 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D V D Sbjct: 9 VVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWHD---TDEFGVCTATEDYKDVAAVADQ 65 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L LGAD +A Sbjct: 66 IGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYVA 125 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + + D M R D +DQ+YFL +Q+QL FPLG ++K VR+ Sbjct: 126 TGHYAQVKR----DENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQKSEVRE 181 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H G++ Y Sbjct: 182 IAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEHAGLMYY 239 Query: 263 TIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314 TIGQR GLG+ +P FVV D + + + VG E+L + + I++ + Sbjct: 240 TIGQRGGLGIGGQHGGDNQPWFVVGKDLSQNILYVGQGFYHEALMSNSLDASVIHFTREM 299 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 E F+C K R Q V V D V F + + + GQA VFY Sbjct: 300 PEE----FTFECTAKFRYRQPDSHVRVHVRGDKAEVVFAEPQRAITPGQAVVFYDG---- 351 Query: 375 ARVLGGGIISGSKRSDAVEESL 396 LGGG+I + ++ + + Sbjct: 352 KECLGGGMIDMAYKNGQPCQYI 373 >gi|87162110|ref|YP_494273.1| tRNA-specific 2-thiouridylase MnmA [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87128084|gb|ABD22598.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|298694901|gb|ADI98123.1| 5-methylaminomethyl-2-thiouridylate- methyltransferase tRNA [Staphylococcus aureus subsp. aureus ED133] Length = 361 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 129/369 (34%), Positives = 196/369 (53%), Gaps = 20/369 (5%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D D VC+ I + Sbjct: 1 MSGGVDSSVTAHVLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYNDVIEVCNQIGIP 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 +Y ++E+ + + V F Y G TP P V CN+ +KF L LGAD +ATGHY Sbjct: 58 YYAVNFEKEYWDKVFTYFLDEYKKGRTPNPDVMCNKEIKFKAFLDHAMNLGADYVATGHY 117 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 R + M R +D +DQ+YFL +QQQL + FP+GD++K VR +A E Sbjct: 118 ARIHRH----EDGHVEMLRGVDNNKDQTYFLNQLSQQQLSKVMFPIGDIEKSEVRRIAEE 173 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 GL A K DS ICF+ + + + + A GD++ L+G+ +G+H+G++ YTIGQ Sbjct: 174 QGLVTAKKKDSTGICFIGEKNFKTFLSQYLP--AQPGDMITLDGKKMGKHSGLMYYTIGQ 231 Query: 267 RRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGDGLFEDAVVD 322 R GLG+ G+P FVV + + + V ++L + + +++ ++ + Sbjct: 232 RHGLGIGGDGDPWFVVGKNLKDNVLYVEQGFHHDALYSDYLIASDYSFVNPE--DNDLDQ 289 Query: 323 GFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 GF+C K R Q VFV+R +D + V F + + GQA VFY D LGG Sbjct: 290 GFECTAKFRYRQKDTKVFVKRENDHALRVTFAEPVRAITPGQAVVFYQGDV----CLGGA 345 Query: 382 IISGSKRSD 390 I +++ Sbjct: 346 TIDDVFKNE 354 >gi|259500706|ref|ZP_05743608.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners DSM 13335] gi|302191396|ref|ZP_07267650.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus iners AB-1] gi|309803957|ref|ZP_07698040.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LactinV 11V1-d] gi|309809301|ref|ZP_07703170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners SPIN 2503V10-D] gi|312873992|ref|ZP_07734028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LEAF 2052A-d] gi|315653459|ref|ZP_07906380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners ATCC 55195] gi|325911482|ref|ZP_08173893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners UPII 143-D] gi|329921278|ref|ZP_08277716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners SPIN 1401G] gi|259168090|gb|EEW52585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners DSM 13335] gi|308163959|gb|EFO66223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LactinV 11V1-d] gi|308170414|gb|EFO72438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners SPIN 2503V10-D] gi|311090541|gb|EFQ48949.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LEAF 2052A-d] gi|315489150|gb|EFU78791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners ATCC 55195] gi|325476682|gb|EGC79837.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners UPII 143-D] gi|328934570|gb|EGG31074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners SPIN 1401G] Length = 375 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 136/381 (35%), Positives = 199/381 (52%), Gaps = 25/381 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSHIRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDD---TDDSGVCTATEDFEDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +RV D I + +Y ++E+ + N V F S Y G TP P + CN+ +KF L +L Sbjct: 60 KRVADKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY ++ D M RP D +DQ+YFL TQ+QL FPL D+ Sbjct: 120 DADYIAMGHYAKTVT----DENGVVHMMRPKDGNKDQTYFLSQVTQEQLKKAIFPLADLS 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A + GL A K DS ICF+ + + + + A+ G+IV +G+I+G+H Sbjct: 176 KPQVRMIAEQAGLATAKKKDSTGICFIGERNFKNFLSEFLP--AMGGNIVTSDGRIVGKH 233 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 +G++ YTIGQR GLG+ + P FVV + + +IV + L + E++ Sbjct: 234 SGLMYYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSDLLYASSLDASEVS 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVF 367 + D + C K R Q V V + N ++ V+V+F++ V GQA VF Sbjct: 294 FFTGLPSNDTTI---HCTAKFRYRQPDVAVTMNYNKANNTVHVEFDELARAVTPGQAIVF 350 Query: 368 YTSDSNEARVLGGGIISGSKR 388 Y + LGG II + R Sbjct: 351 YDGE----ECLGGAIIDKAYR 367 >gi|330503284|ref|YP_004380153.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas mendocina NK-01] gi|328917570|gb|AEB58401.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas mendocina NK-01] Length = 362 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 123/372 (33%), Positives = 191/372 (51%), Gaps = 26/372 (6%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83 +V MSGGVDSSV A LL GY V G+ ++ ++ ++ C A D+ DA+ VCD I Sbjct: 2 IVGMSGGVDSSVSALLLMEQGYQVEGLFMKNWDEDDGTE---YCTAMDDLADAQAVCDRI 58 Query: 84 NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143 + + ++ + + V F + Y AG TP P + CNR +KF L LGAD++AT Sbjct: 59 GIKLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKAFLDYALSLGADLIAT 118 Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 GHY+R R D R + + +D +DQSYFL A Q+ FP+G+++K VR + Sbjct: 119 GHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGVQIAKTLFPVGELEKPQVRAI 173 Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263 A + L A K DS ICF+ + ++ D +K+ A GDI GQ++GRH+G++ +T Sbjct: 174 AEKYELATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGDIETTEGQVIGRHHGLMYHT 231 Query: 264 IGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315 IGQR+GLG+ +P +V+ D + +IVG L + EI W+ Sbjct: 232 IGQRQGLGIGGLKDASDDPWYVLRKDLTRNVLIVGQGNAHPWLFSRALLASEIYWVNPVD 291 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + K+R Q +++ + G F++ + V GQ+ VFY + Sbjct: 292 LSSP----RRLTAKVRYRQSDQLCTLEKTETGYRAVFDEPQRAVTPGQSVVFYDGEV--- 344 Query: 376 RVLGGGIISGSK 387 LGGG+I ++ Sbjct: 345 -CLGGGVIETAE 355 >gi|161486247|ref|NP_753421.2| tRNA-specific 2-thiouridylase MnmA [Escherichia coli CFT073] gi|30173414|sp|Q8CXZ8|MNMA_ECOL6 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 368 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 125/374 (33%), Positives = 196/374 (52%), Gaps = 28/374 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VC Sbjct: 6 KKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L L AD Sbjct: 63 DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLCAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R DGK R + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 123 YIATGHYVRRAXV---DGKSR--LLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++GL A K DS ICF+ + K+ + R A G I+ ++G +G H G+ Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFRKFLGRYLP--AQPGKIITVDGDEIGEHQGL 235 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +T+GQR+GLG+ EP +VV D ++ +IV L + ++++W+ Sbjct: 236 MYHTLGQRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWV 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTS 370 + +C VK R Q +P V+ D D + V F++ V GQ+ VFY Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDADRIEVIFDEPVAAVTPGQSAVFYNG 351 Query: 371 DSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 EV----CLGGGIIE 361 >gi|308186449|ref|YP_003930580.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Pantoea vagans C9-1] gi|308056959|gb|ADO09131.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Pantoea vagans C9-1] Length = 370 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 126/378 (33%), Positives = 197/378 (52%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAADDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGMKLHKVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + D + + R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 120 LGADFIATGHYVRRK-----DVDGQSQLLRGLDGNKDQSYFLYTLSHEQIAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++ L A K DS ICF+ + K+ D + R A G+I GQI+G Sbjct: 175 EKPEVRRIAEQLDLITAKKKDSTGICFIGERKFRDFLARYLP--AQPGEIETTEGQIVGE 232 Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ +P +VV D +R+IV G L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGLKESKDDPWYVVDKDVARNRLIVAQGGDHPRLMSVGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACV 366 ++W+ + +C VK R Q +P + + DD + V F++ V GQ+ V Sbjct: 293 LHWVD----RQPITAPLRCTVKTRYRQTDIPCEIIPQGDDRIEVRFDEPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY D LGGGII Sbjct: 349 FYLGDV----CLGGGIIE 362 >gi|308049705|ref|YP_003913271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ferrimonas balearica DSM 9799] gi|307631895|gb|ADN76197.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ferrimonas balearica DSM 9799] Length = 367 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 126/382 (32%), Positives = 194/382 (50%), Gaps = 27/382 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + ++ +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A QD+ DA Sbjct: 3 DNRNKKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDTEE---YCAASQDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L + Sbjct: 60 QAVCDKLGIELHSVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAAEA 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R R + M R +D +DQSYFL+ + + FP+G++ Sbjct: 120 LGADYIATGHYVRRRQR----EDGQFEMLRGLDGNKDQSYFLYTLGHEHVAQTLFPVGEL 175 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E L A K DS ICF+ + K+ D + + A GDI G+++G+ Sbjct: 176 EKPEVRRIAEEQDLITAGKKDSTGICFIGERKFKDFLAKYLP--AQPGDIETTEGEVIGQ 233 Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H+G++ +T+GQR+GL + P +VV D + +IVG L + + + Sbjct: 234 HDGLMYHTLGQRKGLRIGGLKDAGEAPWYVVDKDLERNVLIVGQGADNPRLFSNGLVANQ 293 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 ++W+ + V VK R Q +P V DG + V F + V GQ+ V Sbjct: 294 LHWVDRTGPQGETV----VSVKTRYRQQDIPCTVTPLADGELEVRFHEPVSSVTPGQSAV 349 Query: 367 FYTSDSNEARVLGGGIISGSKR 388 FY D LGGGII R Sbjct: 350 FYQGDV----CLGGGIIDRVIR 367 >gi|331091036|ref|ZP_08339878.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium 2_1_46FAA] gi|330405258|gb|EGG84794.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium 2_1_46FAA] Length = 360 Score = 487 bits (1254), Expect = e-135, Method: Composition-based stats. Identities = 138/368 (37%), Positives = 202/368 (54%), Gaps = 15/368 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDA 76 + +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + G CC V DA Sbjct: 2 EKKKVVVGMSGGVDSSVAAHLLKEQGYDVIGVTMQIWQDEDRAIQEENGGCCGLSAVDDA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV + + +YV ++++ F+ VI F Y G TP PC+ CNR VK+ LL + + Sbjct: 62 RRVAGQLEIPYYVMNFKKEFKKEVIDYFIEEYRQGRTPNPCIACNRYVKWESLLKRSMDI 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R R + R L +DQ+Y L+ TQ QL P+G+ Sbjct: 122 GADYIATGHYARIVKL----ENGRYTLKRSATLAKDQTYALYNLTQNQLSHTLMPVGEYT 177 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ +R +A ++ L +A+K DSQDICFV G Y ++ G+ V LNG ILG+H Sbjct: 178 KDEIRQIAEKIHLQVANKPDSQDICFVPDGDYASFIEETTGERIQTGNFVDLNGNILGQH 237 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GII+YT+GQR+GLG+++G P FV+ + ++ V++G E + + +N++ Sbjct: 238 KGIIHYTVGQRKGLGLSLGRPAFVLEIRPETNEVVIGTNEDAMSYTLRANHLNFMSISDL 297 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 E F KIR + +++ +D V F++ + + GQA VFY + Sbjct: 298 E----GEMHVFAKIRYNHKGAWCTIKKTSEDEVLCTFDEPQRAITPGQAVVFYDDE---- 349 Query: 376 RVLGGGII 383 V+GGG I Sbjct: 350 YVIGGGTI 357 >gi|312966389|ref|ZP_07780611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 2362-75] gi|312288842|gb|EFR16740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli 2362-75] Length = 368 Score = 486 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 122/374 (32%), Positives = 196/374 (52%), Gaps = 28/374 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V +SGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VC Sbjct: 6 KKVIVGISGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVC 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L LGAD Sbjct: 63 DKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 123 YIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQ 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G+ Sbjct: 178 VRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGL 235 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +T+GQR+GLG+ EP +VV D ++ +IV L + ++++W+ Sbjct: 236 MYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWV 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTS 370 + +C VK R Q +P V+ D D + V F++ V GQ+ VFY Sbjct: 296 D----REPFTGTMRCTVKTRYRQTDIPCTVKALDADRIEVIFDEPVAAVTPGQSAVFYNG 351 Query: 371 DSNEARVLGGGIIS 384 + LGGGII Sbjct: 352 EV----CLGGGIIE 361 >gi|125973240|ref|YP_001037150.1| tRNA-specific 2-thiouridylase MnmA [Clostridium thermocellum ATCC 27405] gi|256003718|ref|ZP_05428706.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium thermocellum DSM 2360] gi|281417440|ref|ZP_06248460.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium thermocellum JW20] gi|205813738|sp|A3DDC8|MNMA_CLOTH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|125713465|gb|ABN51957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium thermocellum ATCC 27405] gi|255992279|gb|EEU02373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium thermocellum DSM 2360] gi|281408842|gb|EFB39100.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium thermocellum JW20] gi|316940529|gb|ADU74563.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium thermocellum DSM 1313] Length = 359 Score = 486 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 137/368 (37%), Positives = 210/368 (57%), Gaps = 14/368 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDA 76 +V+V MSGGVDSSV AA+L GY+VIG T+Q++ + +G CC+ V DA Sbjct: 2 SKKKVMVGMSGGVDSSVAAAILLEQGYEVIGATMQIWPDTDEETKLVEGGCCSLSAVDDA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R V + + + +YV ++++ F +VI F Y G TP PC+ CNR VKF +L+ + Sbjct: 62 RSVANKLGIPYYVLNFKDIFEKSVINYFKDEYLKGRTPNPCIACNRFVKFESMLNKALSM 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 G D +ATGHY + DD K+R ++ + + ++DQ+Y L+ TQ+QL + P+G+ Sbjct: 122 GIDYIATGHYA---IITYDDNKKRYLLKKSVTQQKDQTYALYNVTQEQLKHILMPIGNFT 178 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 KE VR A+E+GL +A K DSQ+ICFV Y ++ G V G ILG+H Sbjct: 179 KEQVRAKAKELGLYVASKPDSQEICFVNDNDYGKFIEENTDKEIKPGYFVDTKGNILGKH 238 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GII+YT+GQR+GLG+A+G+P++VV +D ++ V++G + + ++N++ Sbjct: 239 RGIIHYTVGQRKGLGIALGKPMYVVRIDAENNTVVLGDENEVYSKELTAYDLNFISI--- 295 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375 D + + + KIR S + +DG V V F+ + V GQ+ VFY D Sbjct: 296 -DKLEEPMRVKAKIRYSAKEADAVIYPLEDGKVRVVFDTPQRAVTPGQSVVFYDGDI--- 351 Query: 376 RVLGGGII 383 V+GGGII Sbjct: 352 -VVGGGII 358 >gi|283784944|ref|YP_003364809.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Citrobacter rodentium ICC168] gi|282948398|emb|CBG87986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Citrobacter rodentium ICC168] Length = 368 Score = 486 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 124/381 (32%), Positives = 199/381 (52%), Gaps = 30/381 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + ++PK +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ Sbjct: 1 MSESPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 56 ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115 Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 LGAD +ATGHY+R D + + R +D +DQSYFL+ +Q+ FP+ Sbjct: 116 AEDLGADYIATGHYVRRA-----DVDGKSRLLRGLDGNKDQSYFLYTLGHEQIAQSLFPV 170 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G++ K VR +A ++ L A K DS ICF+ + K+ + + R A G IV ++G Sbjct: 171 GELSKPQVRKIAEDLELVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIVTVDGDE 228 Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304 +G+H G++ +T+GQR+GLG+ +P +VV D ++ +IV L + Sbjct: 229 IGQHQGLMYHTLGQRKGLGIGGTKEGTEDPWYVVDKDVENNILIVAQGHDHPRLMSVGLI 288 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363 ++++W+ F +C VK R Q +P V+ ++D + V F++ V GQ Sbjct: 289 AQQLHWVDRLPF----TGTMRCTVKTRYRQTDIPCTVKALDNDRIEVIFDEPVAAVTPGQ 344 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY + LGGGII Sbjct: 345 SAVFYNGEV----CLGGGIIE 361 >gi|312871416|ref|ZP_07731511.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LEAF 3008A-a] gi|311093069|gb|EFQ51418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LEAF 3008A-a] Length = 375 Score = 486 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 136/381 (35%), Positives = 199/381 (52%), Gaps = 25/381 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSHIRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDD---TDDSGVCTATEDFEDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +RV D I + +Y ++E+ + N V F S Y G TP P + CN+ +KF L +L Sbjct: 60 KRVADKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY ++ D M RP D +DQ+YFL TQ+QL FPL D+ Sbjct: 120 DADYIAMGHYAKTVT----DKNGVVHMMRPKDGNKDQTYFLSQVTQEQLKKAIFPLADLS 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A + GL A K DS ICF+ + + + + A+ G+IV +G+I+G+H Sbjct: 176 KPQVRMIAEQAGLATAKKKDSTGICFIGERNFKNFLSEFLP--AMGGNIVTSDGRIVGKH 233 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 +G++ YTIGQR GLG+ + P FVV + + +IV + L + E++ Sbjct: 234 SGLMYYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSDLLYASSLDASEVS 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVF 367 + D + C K R Q V V + N ++ V+V+F++ V GQA VF Sbjct: 294 FFTGLPSNDTTI---HCTAKFRYRQPDVAVTMNYNKANNTVHVEFDELARAVTPGQAIVF 350 Query: 368 YTSDSNEARVLGGGIISGSKR 388 Y + LGG II + R Sbjct: 351 YDGE----ECLGGAIIDKAYR 367 >gi|312872357|ref|ZP_07732427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LEAF 2062A-h1] gi|311092180|gb|EFQ50554.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LEAF 2062A-h1] Length = 375 Score = 486 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 136/381 (35%), Positives = 199/381 (52%), Gaps = 25/381 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSHIRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDD---TDDSGVCTATEDFEDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +RV D I + +Y ++E+ + N V F S Y G TP P + CN+ +KF L +L Sbjct: 60 KRVADKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY ++ D M RP D +DQ+YFL TQ+QL FPL D+ Sbjct: 120 DADYIAMGHYAKTVT----DKNGVVHMMRPKDGNKDQTYFLSQVTQEQLKKAIFPLADLS 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A + GL A K DS ICF+ + + + + A+ G+IV +G+I+G+H Sbjct: 176 KPQVRMIAEQAGLATATKKDSTGICFIGERNFKNFLSEFLP--AMGGNIVTADGRIVGKH 233 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 +G++ YTIGQR GLG+ + P FVV + + +IV + L + E++ Sbjct: 234 SGLMYYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSDLLYASSLDASEVS 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVF 367 + D + C K R Q V V + N ++ V+V+F++ V GQA VF Sbjct: 294 FFTGLPSNDTTI---HCTAKFRYRQPDVAVTMNYNKANNTVHVEFDELARAVTPGQAIVF 350 Query: 368 YTSDSNEARVLGGGIISGSKR 388 Y + LGG II + R Sbjct: 351 YDGE----ECLGGAIIDKAYR 367 >gi|300723601|ref|YP_003712906.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xenorhabdus nematophila ATCC 19061] gi|297630123|emb|CBJ90760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xenorhabdus nematophila ATCC 19061] Length = 367 Score = 486 bits (1253), Expect = e-135, Method: Composition-based stats. Identities = 125/378 (33%), Positives = 199/378 (52%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVAGLFMKNWEEDDGEE---YCSAADDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGIELHTINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R R D + R +D +DQSYFL+ + QQ+ FP+G++ Sbjct: 120 LGADYIATGHYVRRR-----DADGISQLLRGLDGNKDQSYFLYTLSHQQIAKSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E+GL A K DS ICF+ + K+ D + R A G IV +GQ +G+ Sbjct: 175 EKPEVRRIAEEIGLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGPIVTEDGQTIGQ 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H+G++ +T+GQR+GLG+ +P +VV + ++ +IV L + ++ Sbjct: 233 HSGLMYHTLGQRKGLGIGGTKDGSEDPWYVVDKELENNTLIVAQGHEHPRLMSVGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACV 366 ++W+ ++ +C VK R Q +P V ++D + V F+ V GQ+ V Sbjct: 293 LHWVN----RQSLKTEIRCVVKTRYRQHDIPCTVIPLSEDKIEVRFDSPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGG+I Sbjct: 349 FYQDEI----CLGGGVIE 362 >gi|302389695|ref|YP_003825516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermosediminibacter oceani DSM 16646] gi|302200323|gb|ADL07893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermosediminibacter oceani DSM 16646] Length = 364 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 158/376 (42%), Positives = 220/376 (58%), Gaps = 19/376 (5%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCA 69 + L+KN RVVVAMSGGVDSS A LLK+ GY+VIG+T+Q++ + R+G CC+ Sbjct: 1 MSLNKN----RVVVAMSGGVDSSTCAYLLKKQGYEVIGITMQIWQDPSEDYTYREGGCCS 56 Query: 70 GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 VYDAR+V + + + +YV +++E F VI F Y G TP PC+ CNR +KF L Sbjct: 57 IGAVYDARKVAEKLGIPYYVLNFKEEFNQKVIEYFIEEYLRGRTPNPCIACNRYIKFEAL 116 Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 L ++ A LATGHY R D R ++ + +D +DQSY L+ TQ QL L Sbjct: 117 LQKAMEVDAYYLATGHYARIEY---DSASGRYLLKKAVDKSKDQSYALYNLTQGQLEHLI 173 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 PLG K +RD+A+E GL +A+K DSQ+ICFV Y + +K +G G IV N Sbjct: 174 MPLGYFTKSQIRDIAKEAGLPVAEKPDSQEICFVND-DYKEFLKEKASGRIKPGPIVDKN 232 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 G+ILG+H GI YTIGQRRGLG++ G+PL+V+ +D+ + V+VG + L +N Sbjct: 233 GRILGQHKGIAFYTIGQRRGLGISAGKPLYVIDIDRKRNAVVVGEEKDLLTKEFTADHVN 292 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W+ + +D + F KIR + D P + + G V V F++ + V GQ+ VFY Sbjct: 293 WIAFDVLDDK----KRVFAKIRYNFDEKPAQIMPLNSGMVKVVFDEPQKSVTPGQSVVFY 348 Query: 369 TSDSNEARVLGGGIIS 384 D VLGGGIIS Sbjct: 349 DGDV----VLGGGIIS 360 >gi|90415927|ref|ZP_01223860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [marine gamma proteobacterium HTCC2207] gi|90332301|gb|EAS47498.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [marine gamma proteobacterium HTCC2207] Length = 370 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 124/380 (32%), Positives = 190/380 (50%), Gaps = 27/380 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LL GY V G+ ++ ++ ++ C A D+ DA++VCD Sbjct: 6 KVIVGMSGGVDSSVAALLLMEQGYSVEGLFMKNWDEDDETE---YCTAKADLADAQQVCD 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + ++ + ++ + + V F Y AG TP P + CNR +KF L + LGAD + Sbjct: 63 KLGITLHTANFAADYWDNVFEHFLEEYRAGRTPNPDILCNREIKFKVFLDYAQILGADAI 122 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R G + + + +D +DQSYFL A Q FP+G+++K VR Sbjct: 123 ATGHYTRLAEVDG-----QTRLLKGLDGNKDQSYFLHAVEQSAFAKSLFPVGELEKPEVR 177 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A E G + K DS ICF+ + ++ D +++ A G++V G ++G+H G++ Sbjct: 178 RIAEEHGFVTSTKKDSTGICFIGERRFKDFLEQYIP--AQPGEMVTPEGVVIGQHQGLMF 235 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313 YTIGQR+GLG+ EP F + D ++R++VG L ++ INW+ Sbjct: 236 YTIGQRQGLGIGGVKNSPDEPWFTLQKDLANNRLVVGQGAQHPLLFTDQLRAEGINWING 295 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F+C K R Q V G V F+ + + GQ+ VFY +D Sbjct: 296 -----TPSSSFRCMAKARYRQPDQECLVTPTATGCEVLFDTPQRAITPGQSVVFYRAD-- 348 Query: 374 EARVLGGGIISGSKRSDAVE 393 LGGGII + Sbjct: 349 --HCLGGGIIEATWNGQMAA 366 >gi|309805355|ref|ZP_07699405.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LactinV 09V1-c] gi|308165355|gb|EFO67588.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LactinV 09V1-c] Length = 375 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 136/381 (35%), Positives = 198/381 (51%), Gaps = 25/381 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSHIRVVVGMSGGVDSSVSALLLKEQGYDVVGVFMKNWDD---TDDSGVCTATEDFEDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +RV D I + +Y ++E+ + N V F S Y G TP P + CN+ +KF L +L Sbjct: 60 KRVADKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY ++ D M RP D +DQ+YFL TQ+QL FPL D+ Sbjct: 120 DADYIAMGHYAKTVT----DKNGVVHMMRPKDGNKDQTYFLSQVTQEQLKKAIFPLADLS 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A + GL A K DS ICF+ + + + + A+ G IV +G+I+G+H Sbjct: 176 KPQVRMIAEQAGLATATKKDSTGICFIGERNFKNFLSEFLP--AMGGKIVTADGRIVGKH 233 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 +G++ YTIGQR GLG+ + P FVV + + +IV + L + E++ Sbjct: 234 SGLMYYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSDLLYASSLDASEVS 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVF 367 + D + C K R Q V V + N ++ V+V+F++ V GQA VF Sbjct: 294 FFTGLPSNDTTI---HCTAKFRYRQPDVAVTMNYNKANNTVHVEFDELARAVTPGQAIVF 350 Query: 368 YTSDSNEARVLGGGIISGSKR 388 Y + LGG II + R Sbjct: 351 YDGE----ECLGGAIIDKAYR 367 >gi|160881034|ref|YP_001560002.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium phytofermentans ISDg] gi|205813731|sp|A9KPI9|MNMA_CLOPH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|160429700|gb|ABX43263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium phytofermentans ISDg] Length = 357 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 143/366 (39%), Positives = 210/366 (57%), Gaps = 15/366 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDARR 78 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + G CC V DARR Sbjct: 2 KKVVVGMSGGVDSSVAAYLLKEAGYDVIGVTMQIWQDEDNQTVEENGGCCGLSAVDDARR 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V +++++ +YV +++ F+ V+ F Y AG TP PC+ CNR VK+ LL+ + Q+GA Sbjct: 62 VANSLDIPYYVMNFKSEFKANVMDYFVKEYQAGRTPNPCIACNRYVKWESLLTRSLQIGA 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R + + +DQ+Y L+ TQ QL P+G+ KE Sbjct: 122 DYIATGHYARIVTLP----NGRFALKKSATAAKDQTYALYNLTQDQLSKTLMPVGEYTKE 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A ++GL +A+K DSQ+ICFV Y ++ + G+ V G ILGRH G Sbjct: 178 EVREIAAKIGLLVANKPDSQEICFVPDNNYAGFIEDYTGQKIIPGNFVDTKGNILGRHQG 237 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 II+YT+GQR+GLG+A+G P FVV + ++ V++G + + R+ ++N + FED Sbjct: 238 IIHYTVGQRKGLGIALGRPAFVVEIRPETNEVVIGSNDDIFTDRLIANKLNAMAVEEFED 297 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 G + KIR + + +++ +D + +FE + V GQA VFY D V Sbjct: 298 ----GMEVIAKIRYNHEGSKCTIRKVSDTEIACEFETPQRAVTPGQAVVFYQGDI----V 349 Query: 378 LGGGII 383 +GGG I Sbjct: 350 VGGGTI 355 >gi|87122222|ref|ZP_01078105.1| tRNA methyltransferase [Marinomonas sp. MED121] gi|86162542|gb|EAQ63824.1| tRNA methyltransferase [Marinomonas sp. MED121] Length = 377 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 127/395 (32%), Positives = 208/395 (52%), Gaps = 30/395 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ T N++ + K+ +V+V MSGGVDSSV A LL + GY V G+ ++ ++ Sbjct: 1 MITETNTPENTIH---SIKNTKVIVGMSGGVDSSVSALLLIQQGYQVEGLFMKNWDEDDG 57 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 ++ C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + C Sbjct: 58 TE---YCTAKDDLADAQSVCDKLGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILC 114 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N+ +KF L LGAD +ATGHY+R DD + + + + +D +DQSYFL+A Sbjct: 115 NKEIKFKAFLEYANALGADYIATGHYVRRTH---DDNQAK--LLKGLDNNKDQSYFLYAV 169 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 + ++ FP+G+++K VR LA+E L +K DS ICF+ + ++ D +++ A Sbjct: 170 GKDEIAKSLFPVGELEKPEVRRLAQEHDLITHNKKDSTGICFIGERRFKDFLEQYLP--A 227 Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIV--- 292 GDI L G +GRH+G++ +TIGQR+GLG+ EP +VV D +++ ++V Sbjct: 228 QPGDIKTLEGDTIGRHSGLMYHTIGQRQGLGIGGLANYSDEPWYVVEKDLDNNVLLVTQS 287 Query: 293 GPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVD 351 + L + ++W+ E + C K R Q + N DG + V Sbjct: 288 SDDKPLYKTHLNASNMDWVARVAPELPLT----CKAKCRYRQADQDCTISANPDGSIEVS 343 Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 F +++ + GQ+ VFY + LGGGII+ + Sbjct: 344 FVEAQRAITPGQSVVFYLDE----ECLGGGIINRA 374 >gi|332173678|gb|AEE22932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Glaciecola agarilytica 4H-3-7+YE-5] Length = 377 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 128/391 (32%), Positives = 199/391 (50%), Gaps = 29/391 (7%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 L++ +L N +V+V MSGGVDSSV A +L + GY V G+ ++ + + C Sbjct: 6 SLSAAELASN-SQKKVIVGMSGGVDSSVSAYILLQQGYQVEGLFMKNWEEDDNDE---YC 61 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 A +D+ DA+ V D + + + ++ + + V F Y +G TP P + CN+ +KF Sbjct: 62 AAAEDLKDAQAVADKLGIELHQINFAAEYWDNVFEYFLEEYKSGRTPNPDIMCNKEIKFK 121 Query: 128 DLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L +L AD +ATGHY+R R G M R MD +DQSYFL+ +Q + Sbjct: 122 AFLEFAAEELEADYIATGHYVRRREVDG-----HWQMLRGMDDNKDQSYFLYTLGEQHVG 176 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 FP+GD++K VR++A+E GL DK DS ICF+ + K+ D + + A G I Sbjct: 177 QTLFPIGDIEKPQVREIAQEQGLITHDKKDSTGICFIGERKFTDFLSQYLP--AQPGVIE 234 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESL 298 GQ +G+H G++ +T+GQR+GL + +P +VV D + +IVG L Sbjct: 235 TPEGQEIGQHQGLMYHTLGQRKGLMIGGMKEFGDDPWYVVDKDMARNVLIVGQGADHPRL 294 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEV 357 + +++W+ KC VK R Q+ +P + + DG V F++ + Sbjct: 295 FSKGLVANQLHWVD----RVGPTCAIKCSVKTRYRQEDIPCSLTLDSDGSARVIFDQPQK 350 Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGSKR 388 V GQ+ VFY ++ LGGGII R Sbjct: 351 AVTPGQSAVFYLNEV----CLGGGIIESYIR 377 >gi|119503231|ref|ZP_01625315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [marine gamma proteobacterium HTCC2080] gi|119460877|gb|EAW41968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [marine gamma proteobacterium HTCC2080] Length = 363 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 126/378 (33%), Positives = 193/378 (51%), Gaps = 26/378 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 NP V+V MSGGVDSSV A LL+ GY V G+ ++ ++ + C A +D+ DA Sbjct: 3 NPSPSTVIVGMSGGVDSSVAALLLRDQGYRVEGLFMKNWDEDDGTD---YCTAKEDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V ++ + + ++ + + V F + Y +G TP P + CNR +KF L +L Sbjct: 60 EAVAASLGIKLHSANFAAEYWDGVFEHFLAEYQSGRTPNPDILCNREIKFRAFLDYATEL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY+R DD R + + +D ++DQSYFL ++L FP+GD+ Sbjct: 120 GADFIATGHYVRR-----DDSGERTALLKGLDPDKDQSYFLHQVGHRELSRSLFPVGDLA 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A + GL A K DS ICF+ + ++ D +++ A G I NGQ LG H Sbjct: 175 KPEVRKIAEQAGLTTARKKDSTGICFIGERRFKDFLQQYLP--AQPGVIEDTNGQALGEH 232 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ +TIGQR+GLG+ P +VV + +IV L H ++ + Sbjct: 233 QGLMYHTIGQRQGLGIGGLADRNAAPWYVVEKHVERNVLIVAQGNDHPRLYKHSLHASTL 292 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 W+ E A +C K+R Q V + G V+F+ + + GQ+ VFY Sbjct: 293 FWIS----EQAPTFPLQCTAKVRYRQPDQSCVVTKTASGFLVEFDVPQRAITPGQSVVFY 348 Query: 369 TSDSNEARVLGGGIISGS 386 +D+ +GGGII G+ Sbjct: 349 HNDT----CMGGGIIEGA 362 >gi|146311302|ref|YP_001176376.1| tRNA-specific 2-thiouridylase MnmA [Enterobacter sp. 638] gi|205816867|sp|A4W9E5|MNMA_ENT38 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|145318178|gb|ABP60325.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterobacter sp. 638] Length = 369 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 122/381 (32%), Positives = 196/381 (51%), Gaps = 30/381 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + +PK +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ Sbjct: 1 MSASPK--KVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADL 55 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 56 ADAQAVCDKLGIELHTVNFAAEYWDNVFELFLEEYKAGRTPNPDILCNKEIKFKAFLEFA 115 Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 LGAD +ATGHY+R D + + R +D +DQSYFL+ Q+ FP+ Sbjct: 116 AEDLGADFIATGHYVRRA-----DVDGKSQLLRGLDGNKDQSYFLYTLGHDQIVQSLFPV 170 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR +A + L A K DS ICF+ + K+ + + R A G I+ ++G Sbjct: 171 GELEKPEVRKIAENLDLITAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDD 228 Query: 253 LGRHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304 +G H G++ +T+GQR+GLG+ EP +VV D ++ ++V L + Sbjct: 229 VGEHQGLMYHTLGQRKGLGIGGTKEGSEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLI 288 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363 ++++W+ + +C VK R Q +P V +++ V V F++ V GQ Sbjct: 289 AQQLHWVD----REPFTGTLRCTVKTRYRQTDIPCTVTALDEERVEVRFDEPVSAVTPGQ 344 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + VFY+ + LGGGII Sbjct: 345 SAVFYSGEI----CLGGGIIE 361 >gi|205822308|sp|A7HV69|MNMA_PARL1 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 399 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 218/367 (59%), Positives = 263/367 (71%), Gaps = 9/367 (2%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 T LNSLDL P+D RVVVAMSGGVDSSV AALLK GYDV+G+TLQLY+ A RKG+ Sbjct: 2 TGLNSLDLPGRPEDTRVVVAMSGGVDSSVTAALLKEQGYDVVGITLQLYDHGAAVSRKGA 61 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 CCAGQD+ DARRV D I + HYV DYE+RFR AV+ FA SYAAGETP+PCV CN VKF Sbjct: 62 CCAGQDIQDARRVADQIGIPHYVLDYEDRFRRAVMDDFADSYAAGETPIPCVRCNERVKF 121 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 DLL R LGA LATGHYI SR G R + RP D ERDQSYFLFATTQ+QL Sbjct: 122 RDLLDTARDLGAAALATGHYIASRR-----GAAGRELHRPRDEERDQSYFLFATTQEQLE 176 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 LRFPLG++ K R LA MGL++A K DSQDICFV G+Y +V+++ G + G++V Sbjct: 177 FLRFPLGELTKPEARALADRMGLEVAGKPDSQDICFVPTGRYTTIVEKLRPGASAPGEVV 236 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHR 302 HL+G++LGRH+GI+N+TIGQRRGLG+ EPLFVV LD +VIVGPRE+LE + Sbjct: 237 HLDGRVLGRHSGIVNFTIGQRRGLGIGASEPVSEPLFVVKLDPLKRQVIVGPREALETQK 296 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362 + LR+INWLGDG F + +G K K+RS++ PVP + R +G V+ +SE GVA G Sbjct: 297 LTLRDINWLGDGPFAELPGEGLKIVAKVRSTRPPVPARLFRTGEGAVVELLESEGGVAPG 356 Query: 363 QACVFYT 369 QACVFY Sbjct: 357 QACVFYD 363 >gi|153814505|ref|ZP_01967173.1| hypothetical protein RUMTOR_00719 [Ruminococcus torques ATCC 27756] gi|317500546|ref|ZP_07958768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|331089354|ref|ZP_08338254.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium 3_1_46FAA] gi|145847999|gb|EDK24917.1| hypothetical protein RUMTOR_00719 [Ruminococcus torques ATCC 27756] gi|316898056|gb|EFV20105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lachnospiraceae bacterium 8_1_57FAA] gi|330405417|gb|EGG84952.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium 3_1_46FAA] Length = 356 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 149/366 (40%), Positives = 210/366 (57%), Gaps = 15/366 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARR 78 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + G CC V DARR Sbjct: 2 KKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEEDVCTVEENGGCCGLSAVEDARR 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + +YV ++ E F+ VI FA SY G+TP PC+ CNR VK+ LL + +GA Sbjct: 62 VAAALGIPYYVMNFREEFQKNVIDYFADSYVNGQTPNPCIACNRYVKWEALLKRSISIGA 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R + R +DQ+Y L+ TQ+QL P+G+ KE Sbjct: 122 DFIATGHYARVEQLS----NGRYALRRSATAAKDQTYALYNLTQEQLKRTLMPVGEYTKE 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A ++GL +ADK DSQDICFVQ G Y ++ A EG+ V +G ++GRH G Sbjct: 178 EVRVIAEKIGLLVADKPDSQDICFVQDGNYAAFIEEHTGKKASEGNFVTSDGTVIGRHKG 237 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 II+YT+GQR+GLG+A+G P FV+ + ++ V++G E + +++N++ + Sbjct: 238 IIHYTVGQRKGLGLALGYPAFVLEIRPETNEVVIGTYEESLTTVVRAKQLNFMSV----E 293 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + + F KIR + V+R +D V FE+ + V GQA VFY + V Sbjct: 294 DLKEPLRVFAKIRYNHKGAWCTVERTKEDEVTCCFEEPQRAVTPGQAIVFYDGE----YV 349 Query: 378 LGGGII 383 LGGG I Sbjct: 350 LGGGTI 355 >gi|83719254|ref|YP_441804.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia thailandensis E264] gi|257137971|ref|ZP_05586233.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia thailandensis E264] gi|123537507|sp|Q2SZ45|MNMA_BURTA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|83653079|gb|ABC37142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia thailandensis E264] Length = 386 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 132/400 (33%), Positives = 185/400 (46%), Gaps = 35/400 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVVV MSGGVDSSV A LLK GYDVIG+ ++ + + C QD D V Sbjct: 3 KRRVVVGMSGGVDSSVTAWLLKEQGYDVIGLFMKNWEDDDDGE---YCSTRQDWIDVVSV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + ++ +++ V F Y+AG TP P V CN +KF L LGA+ Sbjct: 60 ADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAE 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K Sbjct: 120 TIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTK 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A ++GL A K DS ICF+ + + D + R G + +G+ +G H G+ Sbjct: 175 VREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TQPGPMKTPDGKTVGEHIGL 232 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 YT GQR+G+G+ GEP FV D S+ + V L + ++W+ Sbjct: 233 AFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWV 292 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-------RNDDGVYVDFEKSEVGVASGQA 364 + DG +C K R Q P + + F++ + V GQ+ Sbjct: 293 AG----EPPSDGARCGAKTRYRQADAPCAFSSAAPGEAAGGERFSLVFDEPQWAVTPGQS 348 Query: 365 CVFYTSDSNEARVLGGGIIS--GSKRSDAVEESLLSVIGD 402 V Y D LGGGII + R DA S S + + Sbjct: 349 AVLYDGDV----CLGGGIIEAAATGRPDAAPASCESALAE 384 >gi|13472503|ref|NP_104070.1| tRNA-specific 2-thiouridylase MnmA [Mesorhizobium loti MAFF303099] gi|14023249|dbj|BAB49856.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Mesorhizobium loti MAFF303099] Length = 378 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 221/377 (58%), Positives = 272/377 (72%), Gaps = 5/377 (1%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSVVA LLKR+GYDV+GVTLQLY+ A+ R GSCCAGQD+ DARRV +T+ + Sbjct: 1 MSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRAGSCCAGQDIDDARRVSETLGIP 60 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 HYV DYEERFR AVI PFA SY AGETP+PCV CN+TVKF+DLL+ ++LGAD LATGHY Sbjct: 61 HYVLDYEERFRKAVIDPFAESYVAGETPIPCVSCNQTVKFADLLATAKELGADALATGHY 120 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 IRS G +G R + RP+D +RDQSYFLFATTQ Q+ LRFPLG + K VR +A E Sbjct: 121 IRS----GANG-AHRALYRPVDADRDQSYFLFATTQAQIDYLRFPLGGLSKPQVRAIAEE 175 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 MGL +A K DSQDICFV QGKY D++ ++ A GDIVH++G++LGRH GI+ YTIGQ Sbjct: 176 MGLTVAAKQDSQDICFVPQGKYSDIIAKLKPAAANPGDIVHIDGRVLGRHEGILRYTIGQ 235 Query: 267 RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKC 326 RRG+G+A GEPL+VV+LD +RV+VGPRE+LE H+IYLR +NWLGDG D G + Sbjct: 236 RRGIGIASGEPLYVVHLDAERARVVVGPREALETHKIYLRNMNWLGDGPLGDIPEGGLEL 295 Query: 327 FVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 F K+RS++ P P ++ V+ E G+A GQACV Y+ D NEARV GGG I S Sbjct: 296 FAKVRSTRPPRPAVLRYVAGVTSVELADGESGIAPGQACVLYSDDGNEARVFGGGFIERS 355 Query: 387 KRSDAVEESLLSVIGDE 403 +R E L + Sbjct: 356 ERGAEAEAMLTKLAARP 372 >gi|115523063|ref|YP_779974.1| tRNA-specific 2-thiouridylase MnmA [Rhodopseudomonas palustris BisA53] gi|115517010|gb|ABJ04994.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodopseudomonas palustris BisA53] Length = 419 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 212/391 (54%), Positives = 279/391 (71%), Gaps = 4/391 (1%) Query: 5 EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64 LNSLDL+ P+D RVVVAMSGGVDSS AALLK +GYDV+G+TLQLY+ +A RK Sbjct: 17 TGAMLNSLDLEGRPQDTRVVVAMSGGVDSSTTAALLKAEGYDVVGITLQLYDHGEAIHRK 76 Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 G+CCAGQD++DAR V + I + HYV DYE RFR +VI FA+SYA GETP+PC++CNR++ Sbjct: 77 GACCAGQDIHDARTVAERIGIPHYVLDYESRFRESVIDSFATSYATGETPVPCIECNRSI 136 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 KF DLLS R+LGA VLATGHY+ SR R + D +RDQSYFLFATT++Q Sbjct: 137 KFRDLLSTARELGAAVLATGHYVSSRRLPD----GSRALVCAADADRDQSYFLFATTREQ 192 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 L LRFPLGDM K R+LAR GL +ADK DSQDICFV G+Y DVV R+ GD Sbjct: 193 LDFLRFPLGDMTKPQTRELARSFGLSVADKHDSQDICFVPSGRYSDVVGRLKPNAMEPGD 252 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 IV L+G++LG+H+GI+++T+GQRRGLG+A PL+V+ L+ ++ RV+VGPR +L + RI Sbjct: 253 IVDLDGRVLGKHHGIVHFTVGQRRGLGIASHAPLYVLRLEPSTRRVVVGPRAALRMDRIL 312 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 LR++NW+GD + AV DG + FV++RS++ P P +++ D V+ E GV+ GQA Sbjct: 313 LRDVNWIGDNSLDLAVGDGLEMFVRVRSTRRPQPAWLRAIDGEYQVELIAGEDGVSPGQA 372 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEES 395 CVFY + +ARVLGGG I + A +++ Sbjct: 373 CVFYDAPEGQARVLGGGFIKSAAPRAANKDA 403 >gi|240140914|ref|YP_002965394.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacterium extorquens AM1] gi|254563424|ref|YP_003070519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacterium extorquens DM4] gi|240010891|gb|ACS42117.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacterium extorquens AM1] gi|254270702|emb|CAX26706.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacterium extorquens DM4] Length = 410 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 209/382 (54%), Positives = 272/382 (71%), Gaps = 8/382 (2%) Query: 4 SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63 + + +NSLDL K P + RVVVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+ A+ R Sbjct: 21 APSPAMNSLDLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHR 80 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 KG+CCAG+D++DAR V +T+ + HYV DYE+RFR +VI FA SY +GETP+PCV+CNR+ Sbjct: 81 KGACCAGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFAESYLSGETPIPCVECNRS 140 Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183 VKF DLL + R+LGA+ LATGHY+ SR + R + R +D RDQSYFL+ATT + Sbjct: 141 VKFRDLLGLARELGAEALATGHYVASRARP----EGGRALYRALDPARDQSYFLYATTPE 196 Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243 QL LRFPLG+ K+ R LARE+GL +ADK+DSQDICFV QG Y DV+ ++ G Sbjct: 197 QLAYLRFPLGERPKDETRALARELGLAVADKADSQDICFVPQGGYADVIAKLRPEATRPG 256 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 +IV L+G+ LG H GII+YT+GQRRGL ++ GEPL+VV L+ ++RV+VGPR +L RI Sbjct: 257 EIVDLDGRRLGEHEGIIHYTVGQRRGLKLSAGEPLYVVRLEPETARVVVGPRAALATRRI 316 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVAS 361 L ++NWLGDG ED V V++RS+++P P + N + V+ E GV+ Sbjct: 317 RLTDLNWLGDGAPEDIVERP--VAVRVRSTREPRPARLSWNAAEACAEVELLVPEDGVSP 374 Query: 362 GQACVFYTSDSNEARVLGGGII 383 GQACV Y D A+VLGGG I Sbjct: 375 GQACVIYADDDPRAQVLGGGTI 396 >gi|167618733|ref|ZP_02387364.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia thailandensis Bt4] Length = 386 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 132/400 (33%), Positives = 185/400 (46%), Gaps = 35/400 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVVV MSGGVDSSV A LLK GYDVIG+ ++ + + C QD D V Sbjct: 3 KRRVVVGMSGGVDSSVTAWLLKEQGYDVIGLFMKNWEDDDDGE---YCSTRQDWIDVVSV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + ++ +++ V F Y+AG TP P V CN +KF L LGA+ Sbjct: 60 ADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAE 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K Sbjct: 120 TIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTK 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A ++GL A K DS ICF+ + + D + R G + +G+ +G H G+ Sbjct: 175 VREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TQPGPMKTPDGKTVGEHIGL 232 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 YT GQR+G+G+ GEP FV D S+ + V L + ++W+ Sbjct: 233 AFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWV 292 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-------RNDDGVYVDFEKSEVGVASGQA 364 + DG +C K R Q P + + F++ + V GQ+ Sbjct: 293 AG----EPPADGARCGAKTRYRQADAPCAFSSAAPGEAAGGERFSLVFDEPQWAVTPGQS 348 Query: 365 CVFYTSDSNEARVLGGGIIS--GSKRSDAVEESLLSVIGD 402 V Y D LGGGII + R DA S S + + Sbjct: 349 AVLYDGDV----CLGGGIIEAAATGRPDAAPASCESALAE 384 >gi|33151616|ref|NP_872969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus ducreyi 35000HP] gi|71153355|sp|Q7U342|MNMA_HAEDU RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|33147837|gb|AAP95358.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus ducreyi 35000HP] Length = 384 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 122/379 (32%), Positives = 201/379 (53%), Gaps = 28/379 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + K+ +V++ MSGGVDSSV A +L++ GY V G+ ++ + + C A D+ DA Sbjct: 21 DNKNKKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADA 77 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQ 135 + V D + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 78 QNVADRLGIKLHKINFAAEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLEYAAED 137 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + + R +D +DQSYFL+ + QQ+ FP+G++ Sbjct: 138 LGADYIATGHYVRRSADNEN-----AQLLRGLDANKDQSYFLYTLSNQQVAKSLFPVGEI 192 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++GL A K DS ICF+ + K+ + + R A GDI + G+I+GR Sbjct: 193 EKPMVRQIATDLGLVTAKKKDSTGICFIGERKFKEFLARFLP--AQPGDISTVEGEIVGR 250 Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLRE 307 H+G++ YT+GQR+GLG+ +P +VV D ++ +IV L + + Sbjct: 251 HDGLMYYTLGQRKGLGIGGVKGLSEDPFYVVEKDLVNNVLIVAQGHDNSALLSTGLIANQ 310 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366 ++W+ + D +C VK R Q + V+ D + + V F++ ++ V GQ+ V Sbjct: 311 LHWVD----RKTIGDTLRCTVKTRYRQTDIACLVEPIDAENIRVIFDEPQIAVTPGQSAV 366 Query: 367 FYTSDSNEARVLGGGIISG 385 FY + LGGG+I Sbjct: 367 FYQGEV----CLGGGVIEA 381 >gi|170743223|ref|YP_001771878.1| tRNA-specific 2-thiouridylase MnmA [Methylobacterium sp. 4-46] gi|205816883|sp|B0UIW7|MNMA_METS4 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|168197497|gb|ACA19444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacterium sp. 4-46] Length = 382 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 217/388 (55%), Positives = 272/388 (70%), Gaps = 11/388 (2%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLDL K P+D RVVVAMSGGVDSSVVA LL+R GYDV+G+TLQLY+ A+ R+G+CC Sbjct: 1 MNSLDLPKAPQDTRVVVAMSGGVDSSVVAGLLRRQGYDVVGITLQLYDHGAATHRRGACC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DARR +T+ + HYV DYE+RFR AVI FA SY GETP+PCV+CNR++KF D Sbjct: 61 AGQDIHDARRAAETLGIPHYVLDYEDRFREAVIDRFAESYIHGETPIPCVECNRSIKFRD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ LGAD LATGHY+ SR G R + R +D RDQSYFL+ATT +QL L Sbjct: 121 LLATALDLGADALATGHYVASRARPG----GGRALYRALDPARDQSYFLYATTPEQLDVL 176 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG++ K+ R LARE GL +ADK DSQDICFV QG+Y DV+ R+ A G+IVHL Sbjct: 177 RFPLGELPKDETRRLAREFGLAVADKPDSQDICFVPQGRYQDVIARLRPDAARPGEIVHL 236 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G+ LGRH GII +T+GQRRGLG+A GEPL+VV LD ++RV+VGPRE+L I + E Sbjct: 237 DGRTLGRHEGIIGFTVGQRRGLGLATGEPLYVVRLDPETARVVVGPREALATSVIRIAET 296 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND--DGVYVDFEKSEVGVASGQACV 366 NWLGD D +DG V++RS+++P P ++ N V E E GV+ GQAC Sbjct: 297 NWLGDEPLAD--LDGMPVAVRVRSTREPRPAALRWNRALACAEVVLETPEDGVSPGQACA 354 Query: 367 FYTSDSNEARVLGGGII---SGSKRSDA 391 Y D ARVLGGG I ++R A Sbjct: 355 IYADDGPRARVLGGGTIQKVEAARREAA 382 >gi|254478804|ref|ZP_05092171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Carboxydibrachium pacificum DSM 12653] gi|214035259|gb|EEB75966.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Carboxydibrachium pacificum DSM 12653] Length = 376 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 145/384 (37%), Positives = 217/384 (56%), Gaps = 17/384 (4%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KG 65 RL +L + KN RVVV MSGGVDSSV A LLK GY+VIGVT+Q++ + +G Sbjct: 7 RLENLSMQKNN---RVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDKDEEAVRVEG 63 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 CC+ V DARRV + I + +YV ++++ F+ VI F Y G TP PC+ CN+ +K Sbjct: 64 GCCSLAAVNDARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNKYIK 123 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F +LL + A +ATGHY D+ + R ++ + +D +DQ+Y L+ TQ QL Sbjct: 124 FEELLKRAWMIDAYYVATGHYAIKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQL 180 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 + FPLG KK+ VR+LA+ +GL +A K DSQ+ICFV Y ++ G+ Sbjct: 181 EHILFPLGKYKKDEVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEF 240 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 G+ LG H GII+YTIGQR+GLG+++G+PL+VV +D ++ V++G + + + Sbjct: 241 RDTRGRFLGYHKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVYGDELIS 300 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364 N++ D + + KIR + ++ +DG V+V F+ + + GQ+ Sbjct: 301 YNNNFISI----DKLEKEMRVKAKIRYTAKEQDAVIRPLEDGRVFVKFDNPQRAITPGQS 356 Query: 365 CVFYTSDSNEARVLGGGIISGSKR 388 VFY D V+GGGII R Sbjct: 357 VVFYDGDI----VVGGGIIERKVR 376 >gi|269120194|ref|YP_003308371.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Sebaldella termitidis ATCC 33386] gi|268614072|gb|ACZ08440.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Sebaldella termitidis ATCC 33386] Length = 359 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 135/374 (36%), Positives = 193/374 (51%), Gaps = 29/374 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVV+ MSGGVDSSV A LLK GY+VIGV ++ ++ + G C A +D D V Sbjct: 2 KKRVVLGMSGGVDSSVAAILLKEQGYEVIGVFMKNWDE---TDENGVCPADEDYKDVIAV 58 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + ++V +Y ++ + + + V F Y AG TP P V CN+ +KF L ++GAD Sbjct: 59 AEQLDVPYYSVNFVKEYWDRVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLDYAVKIGAD 118 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R D GK R + R +D +DQ+YFL +Q+QL + FP+G+ K+ Sbjct: 119 YIATGHYARIER---DSGKVR--LLRGLDDNKDQTYFLCQLSQEQLDKVIFPIGEYNKKD 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R +A + L A K DS ICF+ + + + + R A G IV +G+ LG H G+ Sbjct: 174 IRAIAEKYNLKTAKKKDSTGICFIGERDFAEFLNRYLP--AKPGKIVTADGENLGNHVGL 231 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWL 311 ++YTIGQR+G+G+ GEP FV D + +IV G E L + N++ Sbjct: 232 MHYTIGQRKGIGIGNTKDGSGEPWFVADKDLEKNELIVVQGGDHEKLYSKALIADNFNFI 291 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTS 370 KC K R Q V V V++ D V F+K E V GQ V Y + Sbjct: 292 NKREL------PLKCTAKFRYRQKDVGVTVEKAGTDSYRVTFDKPEKAVTLGQIVVLYDN 345 Query: 371 DSNEARVLGGGIIS 384 + LGGGII Sbjct: 346 E----ECLGGGIIK 355 >gi|309807240|ref|ZP_07701212.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LactinV 03V1-b] gi|308166378|gb|EFO68585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus iners LactinV 03V1-b] Length = 375 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 136/381 (35%), Positives = 199/381 (52%), Gaps = 25/381 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK YDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSHIRVVVGMSGGVDSSVSALLLKEQRYDVVGVFMKNWDD---TDDSGVCTATEDFEDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +RV D I + +Y ++E+ + N V F S Y G TP P + CN+ +KF L +L Sbjct: 60 KRVADKIGIPYYSINFEKEYWNKVFEYFLSEYKRGRTPNPDIMCNKEIKFKSFLDFAMKL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY ++ D M RP D +DQ+YFL TQ+QL FPL D+ Sbjct: 120 DADYIAMGHYAKTVT----DENGIVHMMRPKDGNKDQTYFLSQVTQEQLKKAIFPLADLS 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A + GL A K DS ICF+ + + + + A+ G+IV +G+I+G+H Sbjct: 176 KPQVRMIAEQAGLATAKKKDSTGICFIGERNFKNFLSEFLP--AMGGNIVTSDGRIVGKH 233 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 +G++ YTIGQR GLG+ + P FVV + + +IV E L + E++ Sbjct: 234 SGLMYYTIGQRSGLGLGGNQSSCAPWFVVGKNLQKNELIVEQGYDSELLYASSLDASEVS 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367 + D + C K R Q V V V ++++ V+V+F++ V GQA VF Sbjct: 294 FFTGLPSNDTTI---HCTAKFRYRQPDVAVTVNYNKDNNTVHVEFDELARAVTPGQAIVF 350 Query: 368 YTSDSNEARVLGGGIISGSKR 388 Y + LGG II + R Sbjct: 351 YDGE----ECLGGAIIDKAYR 367 >gi|259046678|ref|ZP_05737079.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Granulicatella adiacens ATCC 49175] gi|259036843|gb|EEW38098.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Granulicatella adiacens ATCC 49175] Length = 374 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 127/378 (33%), Positives = 188/378 (49%), Gaps = 27/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + + +RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D Sbjct: 2 SNEKIRVVVGMSGGVDSSVTALLLKEAGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V + I + +Y ++E+ + + V F Y G TP P V CN+ VKF L QL Sbjct: 59 AAVAEQIGIPYYSVNFEKEYWDRVFEYFLREYRLGRTPNPDVMCNKEVKFQAFLDYALQL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +A GHY R V D + R D +DQ+YFL Q+QL FP+G ++ Sbjct: 119 GADYVAMGHYAR----VEKDENGIVHLLRGKDNNKDQTYFLSQLNQKQLEKAMFPIGHLE 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ VR++A + L A K DS +CF+ + + + + A G +V L+G++ G H Sbjct: 175 KKEVREIAEKYDLATAKKKDSTGVCFIGERNFNEFLSNYLP--AKPGKMVTLDGEVKGDH 232 Query: 257 NGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 G++ YTI G G G +P FV+ D +++ + VG +L + +I Sbjct: 233 AGLMYYTIGQRQGLGIGGGGKTNDPWFVIGKDLSTNTLYVGQGFHHPNLYSDSLTATDIQ 292 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVASGQACV 366 + D E F+C K R Q V V +++ V F++ + GQA V Sbjct: 293 FTNDLPRE----KTFECTAKFRYRQQDTKVKVVLDEKDPTRATVIFDEPVRAITPGQAVV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 349 FYNGE----ECLGGGIID 362 >gi|205821605|sp|Q07SU0|MNMA_RHOP5 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 400 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 212/387 (54%), Positives = 279/387 (72%), Gaps = 4/387 (1%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 LNSLDL+ P+D RVVVAMSGGVDSS AALLK +GYDV+G+TLQLY+ +A RKG+CC Sbjct: 2 LNSLDLEGRPQDTRVVVAMSGGVDSSTTAALLKAEGYDVVGITLQLYDHGEAIHRKGACC 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD++DAR V + I + HYV DYE RFR +VI FA+SYA GETP+PC++CNR++KF D Sbjct: 62 AGQDIHDARTVAERIGIPHYVLDYESRFRESVIDSFATSYATGETPVPCIECNRSIKFRD 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LLS R+LGA VLATGHY+ SR R + D +RDQSYFLFATT++QL L Sbjct: 122 LLSTARELGAAVLATGHYVSSRRLPD----GSRALVCAADADRDQSYFLFATTREQLDFL 177 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLGDM K R+LAR GL +ADK DSQDICFV G+Y DVV R+ GDIV L Sbjct: 178 RFPLGDMTKPQTRELARSFGLSVADKHDSQDICFVPSGRYSDVVGRLKPNAMEPGDIVDL 237 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG+H+GI+++T+GQRRGLG+A PL+V+ L+ ++ RV+VGPR +L + RI LR++ Sbjct: 238 DGRVLGKHHGIVHFTVGQRRGLGIASHAPLYVLRLEPSTRRVVVGPRAALRMDRILLRDV 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 NW+GD + AV DG + FV++RS++ P P +++ D V+ E GV+ GQACVFY Sbjct: 298 NWIGDNSLDLAVGDGLEMFVRVRSTRRPQPAWLRAIDGEYQVELIAGEDGVSPGQACVFY 357 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEES 395 + +ARVLGGG I + A +++ Sbjct: 358 DAPEGQARVLGGGFIKSAAPRAANKDA 384 >gi|307728482|ref|YP_003905706.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia sp. CCGE1003] gi|307583017|gb|ADN56415.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia sp. CCGE1003] Length = 385 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 125/396 (31%), Positives = 184/396 (46%), Gaps = 33/396 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 +VVV MSGGVDSSV A LLK GYDV+G+ ++ + S+ C QD D Sbjct: 2 SKQKVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADLIGIDVEAVNFASEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R R + R + + D +DQSYFL Q QL FPLG++ K Sbjct: 119 ETIATGHYARVR-----ENNGRFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A ++ L A K DS ICF+ + + D + R G + +G+++G H G Sbjct: 174 KVREIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTTDGKVVGEHIG 231 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT GQR+G+G+ GEP FV D S+ + V L H + ++W Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAGKDIASNTLFVAQGHDHPWLLSHTLTAGNVSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-------NDDGVYVDFEKSEVGVASGQ 363 + + +GF C K R Q + +D + F++++ V GQ Sbjct: 292 VAG----EPPPEGFACGAKTRYRQADARCTFRSASGATTNGEDLFELTFDEAQWAVTPGQ 347 Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSV 399 + V Y D LGGGII + + + Sbjct: 348 SAVLYDGDV----CLGGGIIEHAATAQPAARTPQKA 379 >gi|307265916|ref|ZP_07547465.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter wiegelii Rt8.B1] gi|306919085|gb|EFN49310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter wiegelii Rt8.B1] Length = 376 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 144/390 (36%), Positives = 217/390 (55%), Gaps = 17/390 (4%) Query: 2 VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61 ++ RL +L + KN RVVV MSGGVDSSV A LLK GY+VIGVT+Q++ + Sbjct: 1 MIESTRRLENLSMQKNN---RVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDKDEE 57 Query: 62 KR--KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119 +G CC+ V DARRV + I + +YV ++++ F+ VI F Y G TP PC+ Sbjct: 58 AVRVEGGCCSLSAVNDARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLKGRTPNPCIA 117 Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 CN+ +KF +LL + A +ATGHY D+ + R ++ + +D +DQ+Y L+ Sbjct: 118 CNKYIKFEELLKRAWMIDAYYVATGHYAIKEY---DEERGRYLLKKSVDTSKDQTYVLYN 174 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 TQ QL + FPLG KK+ VR LA+ +GL +A K DSQ+ICFV Y ++ Sbjct: 175 LTQTQLEHILFPLGKYKKDEVRKLAQNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEE 234 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE 299 G+ G+ LG H GII+YTIGQR+GLG+++G+PL+VV +D ++ V++G + + Sbjct: 235 IKPGEFRDTRGRFLGYHKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVF 294 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVG 358 + N++ D + + KIR + ++ +DG V+V F+ + Sbjct: 295 GDELISYNNNFISI----DKLEGEMRVKAKIRYTAKEQDAVIRPLEDGRVFVKFDNPQRA 350 Query: 359 VASGQACVFYTSDSNEARVLGGGIISGSKR 388 + GQ+ VFY D V+GGG I R Sbjct: 351 ITPGQSVVFYDGDI----VVGGGTIERKVR 376 >gi|85712895|ref|ZP_01043936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Idiomarina baltica OS145] gi|85693275|gb|EAQ31232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Idiomarina baltica OS145] Length = 376 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 124/379 (32%), Positives = 195/379 (51%), Gaps = 28/379 (7%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 KNP + +V+V MSGGVDSSV A LL + GY V G+ ++ + + C A D+ D Sbjct: 6 KNPSETKVIVGMSGGVDSSVSAYLLLQQGYQVEGLFMKNWEEDDDDE---YCAAADDLAD 62 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A VC+ + + + ++ + + V F Y AG TP P + CN+ +KF L + Sbjct: 63 AEAVCEKLGIELHTVNFAAEYWDNVFEHFLDEYKAGRTPNPDIMCNKEIKFKAFLEFAAE 122 Query: 136 -LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD +ATGHY+R G + + R +D +DQSYFL+ + + + FP+G+ Sbjct: 123 ALGADYIATGHYVRRAFNDG-----KWQLLRGLDNNKDQSYFLYTLSHEHVAQTLFPVGE 177 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K VR +A E GL ADK DS ICF+ + K+ D +++ A G I ++G+ LG Sbjct: 178 LEKPEVRRIAEEQGLVTADKKDSTGICFIGERKFKDFLQQYLP--AQPGKIESVDGEELG 235 Query: 255 RHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 H G++ +TIGQR+GL + +P +VV D + ++V L + Sbjct: 236 DHEGLMYHTIGQRKGLHIGGLADAGDDPWYVVDKDVERNVLVVAQGKNHPRLFSKGLIAN 295 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365 +++W+ + + + +C VK R Q + + DG + V F++ V GQ+ Sbjct: 296 QLHWVN----REEITEPLRCVVKTRYRQADIACQITPAADGRITVSFDEPVAAVTPGQSA 351 Query: 366 VFYTSDSNEARVLGGGIIS 384 VFY D LGGGII Sbjct: 352 VFYIDDV----CLGGGIIE 366 >gi|91793184|ref|YP_562835.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella denitrificans OS217] gi|91715186|gb|ABE55112.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shewanella denitrificans OS217] Length = 377 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 129/398 (32%), Positives = 200/398 (50%), Gaps = 32/398 (8%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 MV+ T + + +V+V MSGGVDSSV A LL + GY+V G+ ++ + Sbjct: 1 MVLGSMTSIKPIH-----NGKKVIVGMSGGVDSSVSAYLLMQQGYEVEGLFMKNWEEDDT 55 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 + C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + C Sbjct: 56 DE---YCAAADDLKDAQAVCDKLGIKMHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMC 112 Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 N+ +KF L L AD +A GHY+R R D+ M R +D +DQSYFL+ Sbjct: 113 NKEIKFKAFLEFADDILDADYIAMGHYVRRR----DNSDGSVQMLRGVDGNKDQSYFLYT 168 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 + +Q+ FP+G+++K VRD+A++MGL DK DS ICF+ + K+ D + Sbjct: 169 LSHEQVARSLFPVGELEKHEVRDIAKQMGLITHDKKDSTGICFIGERKFTDFLATYLP-- 226 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV-- 292 A GDI G+++G+H G++ +T+GQR+GLG+ +P +VV D + +IV Sbjct: 227 AQPGDIETPEGEVIGKHQGLMYHTLGQRKGLGIGGLKDSNEDPWYVVEKDLLRNVLIVAQ 286 Query: 293 -GPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYV 350 G L + + +++W+ + VK R Q VP + +D + V Sbjct: 287 GGNHPRLMSQGMTVNQLHWVD----RKGPATDSQLVVKTRYRQTDVPCRISFDDPQRITV 342 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388 F+ V GQ+ VFY D LGGGII R Sbjct: 343 IFDSPVAAVTPGQSAVFYDGDV----CLGGGIIDSLIR 376 >gi|53804157|ref|YP_114223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylococcus capsulatus str. Bath] gi|81681831|sp|Q607H5|MNMA_METCA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|53757918|gb|AAU92209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylococcus capsulatus str. Bath] Length = 371 Score = 484 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 192/386 (49%), Gaps = 25/386 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 VVV MSGGVDSSV A LL R GY V G+ ++ + ++ C A QD DA++V Sbjct: 2 KPHVVVGMSGGVDSSVTALLLLRQGYRVSGLFMKNWEEDDGTE---YCTAAQDFADAKQV 58 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C+ + V + ++ + + V F S Y AG TP P + CN+ +KF L LGAD Sbjct: 59 CERLGVELHTVNFAAEYWDEVFEVFLSEYRAGRTPNPDILCNKQIKFRAFLDYAEDLGAD 118 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++A GHY R + + R + + D +DQSYFL+ Q+QL FPLG ++K Sbjct: 119 LIAMGHYARVA-----EEEGRLQLLKGCDPGKDQSYFLYTLQQEQLARTLFPLGGLRKTE 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA G K DS ICF+ + ++ D + R A GDI G +LGRH+G+ Sbjct: 174 VRALAAGAGFANDAKKDSTGICFIGERRFKDFLARYLP--ARPGDIRTPEGVLLGRHDGL 231 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + YT+GQR GLG+ EP +V+ D + ++VG L + ++W+ Sbjct: 232 MYYTLGQRSGLGIGGTRAGGQEPWYVLDKDLARNVLVVGQGHDHPLLYRDGLLASRLHWV 291 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTS 370 A + +C K R Q ++ +D + V F + + V GQ+ VFY Sbjct: 292 DGAGP--APGEILRCAAKTRYRQSDQDCRIRLIGEDRLEVVFAQPQRAVTPGQSVVFYQD 349 Query: 371 DSNEARVLGGGIISGSKRSDAVEESL 396 D LGGG+I + +D+ ++ Sbjct: 350 DC----CLGGGVIDLTFNADSRADAA 371 >gi|291550046|emb|CBL26308.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ruminococcus torques L2-14] Length = 358 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 141/368 (38%), Positives = 208/368 (56%), Gaps = 15/368 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDA 76 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + + G CC V DA Sbjct: 2 SKGKVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEENEVQEENGGCCGLSAVDDA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV +I + +YV ++++ F+ VI F Y G TP PC+ CNR VK+ LL + + Sbjct: 62 RRVASSIGIPYYVMNFKQEFQKNVIDYFTKEYLNGRTPNPCIACNRYVKWEALLQRSLSI 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R R + R L +DQ+Y L+ TQ+QL P+G+ Sbjct: 122 GADYIATGHYARIDKLS----NGRYAIRRSATLAKDQTYALYNLTQEQLEHTLMPVGNYS 177 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ +R++A ++GL +A+K DSQDICFV G Y ++ +G+ V +G+ILG+H Sbjct: 178 KDQIREMAEKIGLQVANKPDSQDICFVPDGDYASFIEENADTPIRQGNFVTPDGKILGKH 237 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GII+YT+GQR+GLG+A+G P FV+ + + V++G E H + E+N++ Sbjct: 238 KGIIHYTVGQRKGLGLALGYPAFVLEIRPETDEVVIGTYEESLTHTLRANELNFMSV--- 294 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + + + + F KIR + V++ +D + F++ V GQA V Y + Sbjct: 295 -EDLTEPMRVFAKIRYNHKGAWCTVEKTGEDEITCTFDEPIRAVTPGQAVVLYDGE---- 349 Query: 376 RVLGGGII 383 VLGGG I Sbjct: 350 YVLGGGTI 357 >gi|163853494|ref|YP_001641537.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacterium extorquens PA1] gi|163665099|gb|ABY32466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacterium extorquens PA1] Length = 410 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 208/382 (54%), Positives = 270/382 (70%), Gaps = 8/382 (2%) Query: 4 SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63 + + +NSLDL K P + RVVVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+ A+ R Sbjct: 21 APSPAMNSLDLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHR 80 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 KG+CCAG+D++DAR V +T+ + HYV DYE+RFR +VI FA SY +GETP+PCV+CNR+ Sbjct: 81 KGACCAGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFAESYLSGETPIPCVECNRS 140 Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183 VKF DLL + R LGA+ LATGHY+ SR + R + R +D RDQSYFL+ATT + Sbjct: 141 VKFRDLLGLARDLGAEALATGHYVASRARP----EGGRALYRALDPARDQSYFLYATTPE 196 Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243 QL LRFPLG+ K+ R LARE+GL +ADK+DSQDICFV QG Y DV+ ++ G Sbjct: 197 QLAYLRFPLGERPKDETRALARELGLAVADKADSQDICFVPQGGYADVIAKLRPEATRPG 256 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 +IV L+G+ LG H GII+YT+GQRRGL ++ GEPL+VV L+ ++RV+VGPR +L RI Sbjct: 257 EIVDLDGRRLGEHEGIIHYTVGQRRGLKLSAGEPLYVVRLEPETARVVVGPRAALATRRI 316 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVAS 361 L ++NWLGDG ED V++RS+++P P + N + V+ E GV+ Sbjct: 317 RLTDLNWLGDGAPEDIAERP--VAVRVRSTREPRPARLSWNAAEACAEVELLVPEDGVSP 374 Query: 362 GQACVFYTSDSNEARVLGGGII 383 GQACV Y D A+VLGGG I Sbjct: 375 GQACVIYADDDPRAQVLGGGTI 396 >gi|16272139|ref|NP_438342.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus influenzae Rd KW20] gi|260580945|ref|ZP_05848769.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae RdAW] gi|1074294|pir||D64144 probable ATPase HI0174 - Haemophilus influenzae (strain Rd KW20) gi|1573129|gb|AAC21843.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] gi|260092434|gb|EEW76373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae RdAW] Length = 418 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 125/388 (32%), Positives = 207/388 (53%), Gaps = 29/388 (7%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 +L L +N +V+ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 47 PQLTQEQLARNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 102 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 103 CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 162 Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 L LGAD +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ Sbjct: 163 KAFLEYAAEDLGADYIATGHYVRRA---GDNENAK--LLRGLDPNKDQSYFLYTLSHKQV 217 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 218 GQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 275 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297 ++ +I+GRH+G++ +T+GQR+GLG+ E +VV D ++ +IV Sbjct: 276 RTVDDEIIGRHDGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR 335 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356 L + +++W+ + + + +C VK R Q +P ++ DD + V F++ + Sbjct: 336 LFSKGLIASQLHWVD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQ 391 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGGII+ Sbjct: 392 SAVTPGQSAVFYLGEV----CLGGGIIA 415 >gi|304397251|ref|ZP_07379130.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pantoea sp. aB] gi|304355400|gb|EFM19768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pantoea sp. aB] Length = 370 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 127/378 (33%), Positives = 195/378 (51%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAADDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGMKLHKVNFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R D + + R +D +DQSYFL+ + QQ+ FP+G++ Sbjct: 120 LGADFIATGHYVRRH-----DVDGQSQLLRGLDGNKDQSYFLYTLSHQQIAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++ L A K DS ICF+ + K+ D + R A G+I GQI+G Sbjct: 175 EKPEVRRIAEQLDLITAKKKDSTGICFIGERKFRDFLARYLP--AQPGEIETTEGQIVGE 232 Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ +P +VV D +R+IV G L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGLKESKDDPWYVVDKDVARNRLIVAQGGDHPRLMSVGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACV 366 ++W+ + +C VK R Q +P + DD + V F++ V GQ+ V Sbjct: 293 LHWVD----RQPITAPLRCTVKTRYRQTDIPCEIIPHGDDRIEVRFDEPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY D LGGGII Sbjct: 349 FYLGDV----CLGGGIIE 362 >gi|301168825|emb|CBW28416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae 10810] Length = 418 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 122/374 (32%), Positives = 202/374 (54%), Gaps = 28/374 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+ MSGGVDSSV A +L++ GY V G+ ++ + + C A D+ DA+ VC Sbjct: 60 KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQAVC 116 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L LGAD Sbjct: 117 DKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGAD 176 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 177 YIATGHYVRRA---GDNENAK--LLRGLDPNKDQSYFLYTLSHKQVGQSLFPVGEIEKPI 231 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++GL A K DS ICF+ + K+ D + R A G+I ++ +I+GRH+G+ Sbjct: 232 VRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDDEIIGRHDGL 289 Query: 260 INYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +T+GQR+GLG+ E +VV D ++ +IV L + +++W+ Sbjct: 290 MYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPRLFSKGLIASQLHWV 349 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTS 370 + + + +C VK R Q +P ++ DD + V F++ + V GQ+ VFY Sbjct: 350 D----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYLG 405 Query: 371 DSNEARVLGGGIIS 384 + LGGGII+ Sbjct: 406 EV----CLGGGIIA 415 >gi|168218238|ref|ZP_02643863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium perfringens NCTC 8239] gi|182379744|gb|EDT77223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium perfringens NCTC 8239] Length = 359 Score = 484 bits (1247), Expect = e-134, Method: Composition-based stats. Identities = 139/368 (37%), Positives = 211/368 (57%), Gaps = 15/368 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARR 78 +VV+ MSGGVDSSV A LLK GYDVIGVT+Q++ K +R+G CC+ V DARR Sbjct: 3 KKKVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARR 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V +++ YV ++ + F+ VI F Y G TP PC+ CN+ +KF +LL + +GA Sbjct: 63 VAQKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGA 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + ++ R + R D +DQ+Y L+ TQ+QL P G+ K+ Sbjct: 123 DYVATGHYAKI-----EERDGRFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKD 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A+E+GLD+ +K DS++ICF+ + + G+ V G +LG+H G Sbjct: 178 KIREIAKEIGLDVHNKKDSEEICFIPDNNHGRYICEAAPNKVRPGNFVDKYGNVLGKHKG 237 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I+ YTIGQR+GLG+A+G P+FV ++ ++ V+VGP E + + ++IN++ D Sbjct: 238 IVYYTIGQRKGLGLALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISI----D 293 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + KIR S P + ++G V V FE + + GQ+ VFY D V Sbjct: 294 KLEGPMEVEAKIRYSARPAKATISPMENGKVKVSFEDKQRAITKGQSVVFYKDD----LV 349 Query: 378 LGGGIISG 385 +GGGII Sbjct: 350 VGGGIIES 357 >gi|331085021|ref|ZP_08334108.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408721|gb|EGG88186.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium 9_1_43BFAA] Length = 357 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 137/367 (37%), Positives = 207/367 (56%), Gaps = 15/367 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDAR 77 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + G CC V DAR Sbjct: 2 KKKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDRAVEEENGGCCGLSAVDDAR 61 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV + + +YV ++++ F+ VI F Y G TP PC+ CNR VK+ LL + +G Sbjct: 62 RVAAALEIPYYVMNFKKEFKEKVIDYFVQEYLHGRTPNPCIACNRYVKWESLLKRSMDIG 121 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY R R + L +DQ+Y L+ TQ+QL P+G+ K Sbjct: 122 ADYIATGHYARVVQL----ENGRYTLKCSATLAKDQTYALYNLTQEQLKRTLMPVGEYTK 177 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + VR++A ++ L IA+K DSQDICFV G Y ++ A EG+ V L+G++LGRH Sbjct: 178 DQVREIAEKINLRIANKPDSQDICFVPDGDYASFIEEEAAVKIPEGNFVDLDGRVLGRHK 237 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI +YT+GQR+GLG+++G P FV+ + ++ +++G E + + ++N++ Sbjct: 238 GITHYTVGQRKGLGLSLGHPAFVLEIRPETNEIVIGSNEDSMSYTLRANQLNFMSI---- 293 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + + + KIR + ++++ D V FE+ + + GQA VFY + Sbjct: 294 EDLTGEMRVWTKIRYNHKGAWCTIRKSGKDEVTCTFEEPQRAITPGQAVVFYDGE----Y 349 Query: 377 VLGGGII 383 V+GGG I Sbjct: 350 VVGGGTI 356 >gi|260583885|ref|ZP_05851633.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Granulicatella elegans ATCC 700633] gi|260158511|gb|EEW93579.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Granulicatella elegans ATCC 700633] Length = 374 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 131/381 (34%), Positives = 192/381 (50%), Gaps = 27/381 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N +++RV+V MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G C A +D D Sbjct: 2 NKENIRVIVGMSGGVDSSVTALLLKQAGYDVIGIFMKNWDD---TDENGVCTATEDYKDV 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V + I + +Y ++E+ + + V F Y G TP P V CN+ VKF L QL Sbjct: 59 AAVAEQIGIPYYSVNFEKEYWDRVFEYFLKEYRLGRTPNPDVMCNKEVKFQAFLEYALQL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +A GHY R V D + R +D +DQ+YFL QQQL FP+G ++ Sbjct: 119 GADYVAMGHYAR----VEKDENGVVRLLRGVDNNKDQTYFLSQLNQQQLSKAMFPIGHLE 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ VR +A E L A K DS +CF+ + + + + A G +V L+G++ G H Sbjct: 175 KKEVRKIAEEFDLATAKKKDSTGVCFIGERNFNEFLSHYLP--AKPGKMVTLDGEVKGDH 232 Query: 257 NGIINYTI----GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 G++ YTI G G G +P FVV D +++ + VG +L ++ ++ Sbjct: 233 AGLMYYTIGQRQGLGIGGGGKTNDPWFVVGKDLSTNTLYVGQGFHHPNLYSDSLFATDLQ 292 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD---GVYVDFEKSEVGVASGQACV 366 + D + + F+C K R Q V V +D V FE+ + GQA V Sbjct: 293 FNTD----EEKPNEFECTAKFRYRQQDTKVRVVFQEDDKTKAMVYFEEPVRAITPGQAVV 348 Query: 367 FYTSDSNEARVLGGGIISGSK 387 FY D LGGGII + Sbjct: 349 FYDGDI----CLGGGIIDKAY 365 >gi|164688541|ref|ZP_02212569.1| hypothetical protein CLOBAR_02186 [Clostridium bartlettii DSM 16795] gi|164602954|gb|EDQ96419.1| hypothetical protein CLOBAR_02186 [Clostridium bartlettii DSM 16795] Length = 362 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 142/371 (38%), Positives = 222/371 (59%), Gaps = 15/371 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA---SKRKGSCCAGQDVYDA 76 +V++ MSGGVDSSV A LLK GYDVIGVT++L+ + + G CC+ + V DA Sbjct: 2 KKKVMIGMSGGVDSSVAAYLLKEQGYDVIGVTMKLWQDDEEYELIENDGGCCSLEAVEDA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R V +++ YV +++E F+ VI F Y G TP PC+ CN+ +KF DL RQ+ Sbjct: 62 RSVAQKLDIPFYVLNFKEVFKEKVIDYFIDEYINGRTPNPCIACNKYIKFEDLYRRARQI 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 G D +ATGHY R D+ R ++ + + ++DQ+Y L+ TQ QL P+GD + Sbjct: 122 GCDYVATGHYARIE---KDEETGRYLLTKSVTDKKDQTYALYNMTQDQLEHTLLPIGDFE 178 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 KE VR++A+E+GL + +K DSQ+ICFV+ Y + VKR + EG+ V G +LGRH Sbjct: 179 KEKVREMAKELGLVVHNKPDSQEICFVKDNDYANYVKRHSNASIKEGNFVDTKGNVLGRH 238 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GI+NYTIGQR+GLG+A G+P+FV+ ++ ++ VI+G + L H + +++N++ Sbjct: 239 KGIVNYTIGQRKGLGIAFGKPMFVIDINAKNNTVILGDNKDLFQHNLIAKDVNFISI--- 295 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + + + + K+R + P V + D + + F++++ + GQ+ V Y D Sbjct: 296 -EDIKEPIRVKAKVRYAAKPADATVYKVGQDKIKIVFDEAQRAITKGQSVVMYDGD---- 350 Query: 376 RVLGGGIISGS 386 +V+GGGII S Sbjct: 351 KVVGGGIIESS 361 >gi|110801338|ref|YP_696468.1| tRNA-specific 2-thiouridylase MnmA [Clostridium perfringens ATCC 13124] gi|168211408|ref|ZP_02637033.1| tRNA -methyltransferase [Clostridium perfringens B str. ATCC 3626] gi|24638315|sp|Q8XJH3|MNMA_CLOPE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|123049729|sp|Q0TPH2|MNMA_CLOP1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|110675985|gb|ABG84972.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium perfringens ATCC 13124] gi|170710614|gb|EDT22796.1| tRNA -methyltransferase [Clostridium perfringens B str. ATCC 3626] Length = 359 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 139/368 (37%), Positives = 211/368 (57%), Gaps = 15/368 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARR 78 +VV+ MSGGVDSSV A LLK GYDVIGVT+Q++ K +R+G CC+ V DARR Sbjct: 3 KKKVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARR 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V +++ YV ++ + F+ VI F Y G TP PC+ CN+ +KF +LL + +GA Sbjct: 63 VAQKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGA 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + ++ R + R D +DQ+Y L+ TQ+QL P G+ K+ Sbjct: 123 DYVATGHYAKI-----EERDGRFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKD 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A+E+GLD+ +K DS++ICF+ + + G+ V G +LG+H G Sbjct: 178 KIREIAKEIGLDVHNKKDSEEICFIPDNNHGRYICEAAPNKVRPGNFVDKYGNVLGKHKG 237 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I+ YTIGQR+GLG+A+G P+FV ++ ++ V+VGP E + + ++IN++ D Sbjct: 238 IVYYTIGQRKGLGLALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISI----D 293 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + KIR S P + ++G V V FE + + GQ+ VFY D V Sbjct: 294 KLEGPMEVEAKIRYSARPAKATISPMENGRVKVSFEDKQRAITKGQSVVFYKDD----LV 349 Query: 378 LGGGIISG 385 +GGGII Sbjct: 350 VGGGIIES 357 >gi|81428407|ref|YP_395407.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase [Lactobacillus sakei subsp. sakei 23K] gi|123564381|sp|Q38XI3|MNMA_LACSS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|78610049|emb|CAI55098.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus sakei subsp. sakei 23K] Length = 379 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 134/392 (34%), Positives = 191/392 (48%), Gaps = 27/392 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + RVVV MSGGVDSSV A LLK+ GYDVIGV ++ ++ + G C A +D D + Sbjct: 5 SNTRVVVGMSGGVDSSVTALLLKQQGYDVIGVFMKNWDD---TDENGVCTATEDYEDVAK 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V I + +Y ++E+ + + V F Y G TP P V CN+ VKF L +L A Sbjct: 62 VASKIGIPYYSVNFEKEYWDRVFEYFLDEYKHGRTPNPDVMCNKEVKFKAFLDYAMELDA 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +A GHY + + D M R D +DQ+YFL A +Q QL FP+G M+K Sbjct: 122 DFIAMGHYAQ----IERDENGIAHMLRGGDSNKDQTYFLSALSQDQLQKSMFPIGHMQKS 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR LA E GL A K DS ICF+ + + + A G ++ ++G G H+G Sbjct: 178 EVRRLAEEAGLATAKKKDSTGICFIGERNFKQFLGEYLP--AQPGKMMTVDGLEKGTHDG 235 Query: 259 IINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWL 311 ++ YTIGQR GLG+ +P FVV D + + VG E L ++ ++ W+ Sbjct: 236 LMYYTIGQRSGLGIGGGGESNDPWFVVGKDLEQNILYVGQGYHNELLYADQLDASKMTWI 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTS 370 F C K R Q V + V + V F+ + GQA VFY Sbjct: 296 TPVDH----GTDFHCTAKFRYRQQDVGITVHMTSETTATVVFDAPVRAITPGQAVVFYDG 351 Query: 371 DSNEARVLGGGIISGSKR--SDAVEESLLSVI 400 A LGGG I + + +D ++ +L + Sbjct: 352 ----AECLGGGTIDVAYKVATDDADKQVLQYV 379 >gi|167580628|ref|ZP_02373502.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia thailandensis TXDOH] Length = 386 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 131/400 (32%), Positives = 185/400 (46%), Gaps = 35/400 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V Sbjct: 3 KRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + ++ +++ V F Y+AG TP P V CN +KF L LGA+ Sbjct: 60 ADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAE 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K Sbjct: 120 TIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTK 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A ++GL A K DS ICF+ + + D + R G + +G+ +G H G+ Sbjct: 175 VREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TQPGPMKTPDGKTVGEHIGL 232 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 YT GQR+G+G+ GEP FV D S+ + V L + ++W+ Sbjct: 233 AFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWV 292 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-------RNDDGVYVDFEKSEVGVASGQA 364 + DG +C K R Q P + + F++ + V GQ+ Sbjct: 293 AG----EPPADGARCGAKTRYRQADAPCAFSSAAPGEAAGGERFSLVFDEPQWAVTPGQS 348 Query: 365 CVFYTSDSNEARVLGGGIIS--GSKRSDAVEESLLSVIGD 402 V Y D LGGGII + R DA S S + + Sbjct: 349 AVLYDGDV----CLGGGIIEAAATGRPDAAPASRESTLAE 384 >gi|88798697|ref|ZP_01114280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Reinekea sp. MED297] gi|88778460|gb|EAR09652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Reinekea sp. MED297] Length = 364 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 128/380 (33%), Positives = 191/380 (50%), Gaps = 26/380 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + + +V+V MSGGVDSSV AALL GY V G+ ++ ++ ++ C A +D+ DA Sbjct: 3 SNSETKVIVGMSGGVDSSVTAALLLEQGYQVEGLFMKNWDEDDGTE---YCTAKEDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + V D + + + ++ + + V F Y AG TP P + CNR +KF L L Sbjct: 60 QAVADRLGIHLHKANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLEYALTL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R+ +GK R + R D +DQ+YFL A +Q FP+G+++ Sbjct: 120 GADKIATGHYARTDTM---NGKGR--LLRGNDHNKDQTYFLHAVGHEQFEKTLFPVGELE 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A + L A K DS ICF+ + ++ D +K+ A G IV L G++LG H Sbjct: 175 KPQVRAIAEKYKLATAKKKDSTGICFIGERRFSDFLKQYLP--AQPGKIVTLEGEVLGDH 232 Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G++ YTIGQR+GLG+ P FV + ++ ++V +L + L I Sbjct: 233 QGLMYYTIGQRQGLGIGGTRHGEAPWFVAQKNLATNELVVVQGTDHPALFTTYMSLNNIY 292 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W+ D E V K R Q + RN G V F + + + GQ+ VFY Sbjct: 293 WVDDTGPELPVT----LACKHRYRQPDQSCELSRNAQGEYQVTFHEPQRAITPGQSAVFY 348 Query: 369 TSDSNEARVLGGGIISGSKR 388 D LGGG+I + Sbjct: 349 LGDV----CLGGGVIETTWN 364 >gi|269123624|ref|YP_003306201.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Streptobacillus moniliformis DSM 12112] gi|268314950|gb|ACZ01324.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Streptobacillus moniliformis DSM 12112] Length = 359 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 126/373 (33%), Positives = 198/373 (53%), Gaps = 27/373 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVV+ MSGGVDSSV A LLK GY+VIGV ++ + + + G C + D D V Sbjct: 2 KKRVVLGMSGGVDSSVAAILLKEAGYEVIGVFMKNWEEKDEN---GVCMSDIDYEDVISV 58 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + + +Y ++ + + + V F S Y TP P V CN+ +KF L +LGAD Sbjct: 59 AEQLEIPYYSVNFVKEYWDRVFEYFLSEYRLARTPNPDVMCNKEIKFKAFLDYANKLGAD 118 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + + K +++ R +D +DQSYFL Q+QL + FP+G+ +K Sbjct: 119 YIATGHYAR----LTTNEKGEKVLLRGVDNNKDQSYFLCGLNQKQLEKVLFPIGEYEKTE 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R +A + L A K DS ICF+ + + + + + A +G+IV +NG ILG H+G+ Sbjct: 175 IRKIAEKYNLKTAKKKDSTGICFIGERNFNEFLSKYLP--AKDGNIVDINGNILGSHHGL 232 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGPRES--LEVHRIYLREINWLG 312 + YTIGQR+G+G+ GEP FVV + + +IV + L + + N++ Sbjct: 233 MYYTIGQRKGIGLGNTKEGTGEPYFVVDKNVEKNELIVAQGDDNLLYSKGLIANKFNFIN 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + + F+C VK R Q+ V + + +D + F++ + V GQ V Y + Sbjct: 293 E------IELPFRCTVKFRYRQNDVSAVIDKIEEDRYQIIFDEKQRAVTLGQIVVLYDGE 346 Query: 372 SNEARVLGGGIIS 384 + LGGGII Sbjct: 347 ----KCLGGGIID 355 >gi|309972705|gb|ADO95906.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Haemophilus influenzae R2846] Length = 413 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 126/388 (32%), Positives = 207/388 (53%), Gaps = 29/388 (7%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 +L L +N +V+ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 42 PQLTQEQLARNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 97 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 98 CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 157 Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 L LGAD +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ Sbjct: 158 KAFLEYAAEDLGADYIATGHYVRRA---GDNENAK--LLRGLDTNKDQSYFLYTLSHKQV 212 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 213 GQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 270 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297 +N +I+GRH+G++ +T+GQR+GLG+ E +VV D ++ +IV Sbjct: 271 RTVNDEIIGRHDGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR 330 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356 L + +++W+ + + + +C VK R Q +P ++ DD + V F++ + Sbjct: 331 LFSKGLIASQLHWVD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQ 386 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGGII+ Sbjct: 387 SAVTPGQSAVFYLGEV----CLGGGIIA 410 >gi|23012016|ref|ZP_00052207.1| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Magnetospirillum magnetotacticum MS-1] Length = 403 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 206/380 (54%), Positives = 270/380 (71%), Gaps = 8/380 (2%) Query: 6 ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65 + +NSLDL K P + RVVVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+ A+ RKG Sbjct: 16 SPAMNSLDLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRKG 75 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 +CCAG+D++DAR V +T+ + HYV DYE++FR +VI FA SY +GETP+PCV+CNR+VK Sbjct: 76 ACCAGRDIHDARAVAETLGIPHYVLDYEDKFRESVIDRFAESYLSGETPIPCVECNRSVK 135 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F DLL++ R LGA+ LATGHY+ SR + R + R +D RDQSYFL+ATT +QL Sbjct: 136 FRDLLALARDLGAEALATGHYVASRPLA----EGGRGLFRALDPARDQSYFLYATTPEQL 191 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 LRFPLG+ K+ R LARE+GL +ADK+DSQDICFV QG Y DV+ ++ A G I Sbjct: 192 AFLRFPLGERPKDETRALARELGLAVADKADSQDICFVPQGGYADVIAKLRPEAARPGAI 251 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 V L+G+ LG H GII+YT+GQRRGL +++GEPL+VV L+ ++RV+VGPR +L RI L Sbjct: 252 VDLDGRHLGEHEGIIHYTVGQRRGLKLSVGEPLYVVRLEPETARVVVGPRAALATRRIRL 311 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQ 363 ++NWLG G E + V++RS+++P P + N + V+ E GV+ GQ Sbjct: 312 TDLNWLGGGTPES--LAELPVAVRVRSTREPRPARLSWNAEAACAEVELVAPEDGVSPGQ 369 Query: 364 ACVFYTSDSNEARVLGGGII 383 ACV Y D A+VLGGG I Sbjct: 370 ACVIYADDGPRAQVLGGGTI 389 >gi|218532352|ref|YP_002423168.1| tRNA-specific 2-thiouridylase MnmA [Methylobacterium chloromethanicum CM4] gi|218524655|gb|ACK85240.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacterium chloromethanicum CM4] Length = 410 Score = 484 bits (1246), Expect = e-134, Method: Composition-based stats. Identities = 209/382 (54%), Positives = 272/382 (71%), Gaps = 8/382 (2%) Query: 4 SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63 + + +NSLDL K P + RVVVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+ A+ R Sbjct: 21 APSPAMNSLDLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHR 80 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 KG+CCAG+D++DAR V +T+ + HYV DYE+RFR +VI FA SY +GETP+PCV+CNR+ Sbjct: 81 KGACCAGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFADSYLSGETPIPCVECNRS 140 Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183 VKF DLL + R+LGA+ LATGHY+ SR + R + R +D RDQSYFL+ATT + Sbjct: 141 VKFRDLLGLARELGAEALATGHYVASRARP----EGGRALYRALDPARDQSYFLYATTPE 196 Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243 QL LRFPLG+ K+ R LARE+GL +ADK+DSQDICFV QG Y DV+ ++ G Sbjct: 197 QLAYLRFPLGERPKDETRALARELGLAVADKADSQDICFVPQGGYADVIAKLRPEATRPG 256 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 +IV L+G+ LG H GII+YT+GQRRGL ++ GEPL+VV L+ ++RV+VGPR +L RI Sbjct: 257 EIVDLDGRRLGEHEGIIHYTVGQRRGLKLSAGEPLYVVRLEPETARVVVGPRAALATRRI 316 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVAS 361 L ++NWLGDG ED V V++RS+++P P + N + V+ E GV+ Sbjct: 317 RLTDLNWLGDGTPEDIVERP--VAVRVRSTREPRPGRLSWNAAEACAEVELLVPEDGVSP 374 Query: 362 GQACVFYTSDSNEARVLGGGII 383 GQACV Y D A+VLGGG I Sbjct: 375 GQACVIYADDDPRAQVLGGGTI 396 >gi|210615810|ref|ZP_03290791.1| hypothetical protein CLONEX_03009 [Clostridium nexile DSM 1787] gi|210150146|gb|EEA81155.1| hypothetical protein CLONEX_03009 [Clostridium nexile DSM 1787] Length = 362 Score = 483 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 143/368 (38%), Positives = 210/368 (57%), Gaps = 13/368 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDA 76 + +VVV MSGGVDSSV A LLK +GYDVIGVT+Q++ + G CC V DA Sbjct: 2 EKKKVVVGMSGGVDSSVAAYLLKEEGYDVIGVTMQIWQDEDRAIQEENGGCCGLTAVDDA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV + + +YV ++++ F+ VI F Y G TP PC+ CNR VK+ LL + + Sbjct: 62 RRVASDLGIPYYVMNFKKEFKENVIDYFVDEYLNGRTPNPCIACNRYVKWESLLKRSMDI 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R R + R L +DQ+Y L+ TQ+QL P+G Sbjct: 122 GADYIATGHYARIEKLP----NGRYSLRRSATLAKDQTYALYNLTQEQLKRTLMPVGAYA 177 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 KE VR++A ++GL +A+K DSQDICFV G Y + ++ EG+ V +G ++GRH Sbjct: 178 KEEVREIAEKIGLRVANKPDSQDICFVPDGNYAEFIEETIEKKIPEGNFVLSDGTVVGRH 237 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GI +YT+GQR+GLG+++G P+FV+ + ++ V++G E + + ++N++ Sbjct: 238 KGITHYTVGQRKGLGLSLGHPVFVLEIRPETNEVVIGSNEESLTYTLRANQLNFMSIEDL 297 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 ++ + + F KIR + V+R +D V FE+ + V GQA VFY D Sbjct: 298 KEG--EKIRVFAKIRYNHKGAWCEVERIGEDEVRCTFEEQQRAVTPGQAVVFYDGD---- 351 Query: 376 RVLGGGII 383 VLGGG I Sbjct: 352 YVLGGGTI 359 >gi|145639770|ref|ZP_01795372.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae PittII] gi|145271138|gb|EDK11053.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae PittII] gi|309750410|gb|ADO80394.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Haemophilus influenzae R2866] Length = 418 Score = 483 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 125/388 (32%), Positives = 208/388 (53%), Gaps = 29/388 (7%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 +L L +N +V+ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 47 PQLTQEQLARNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 102 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 103 CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 162 Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 L LGAD +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ Sbjct: 163 KAFLEYAAEDLGADYIATGHYVRRA---GDNENAK--LLRGLDPNKDQSYFLYTLSHKQV 217 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 218 GQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 275 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297 ++ +I+GRH+G++ +T+GQR+GLG+ E +VV D ++ +IV Sbjct: 276 RTVDDEIIGRHDGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR 335 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356 L + +++W+ + + + +C VK R Q +P ++ DD + V F++ + Sbjct: 336 LFSKGLIASQLHWVD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQ 391 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY ++ LGGGII+ Sbjct: 392 SAVTPGQSAVFYLGEA----CLGGGIIA 415 >gi|312172139|emb|CBX80396.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erwinia amylovora ATCC BAA-2158] Length = 369 Score = 483 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 119/378 (31%), Positives = 197/378 (52%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ G+ V G+ ++ + + C A +D+ DA Sbjct: 2 SNSQKKVIVGMSGGVDSSVSAWLLQQQGFQVEGLFMKNWEEEDGEE---YCTAAEDLADA 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQ 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 59 QAVCDKLGIYLHTINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEYAAED 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY R + D + + R +D +DQSYFL+ + QQ+ FP+G++ Sbjct: 119 LGADYIATGHYARRQ-----DVDGKSRLLRGLDGNKDQSYFLYTLSHQQIAQSLFPVGEL 173 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K VR +A ++ L A K DS ICF+ + K+ + + R A G I+ ++G +G+ Sbjct: 174 AKPEVRRIAEQLELVTAKKKDSTGICFIGERKFTEFLARYLP--AQPGAIISVDGVNVGQ 231 Query: 256 HNGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ + P +VV D ++ ++V L + ++ Sbjct: 232 HQGLMYHTLGQRKGLGIGGRKEANEDPWYVVDKDVTNNLLVVAQGHDHPRLMSQGLTAQQ 291 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366 ++W+ + + +C VK R Q+ +P V D + + V F+ V GQ+ V Sbjct: 292 LHWVD----RNVLSAPLRCAVKTRYRQEDIPCTVIPLDAERIEVRFDYPVAAVTPGQSAV 347 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 348 FYLDEV----CLGGGIIE 361 >gi|159185866|ref|NP_356917.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Agrobacterium tumefaciens str. C58] gi|25298384|pir||AC3012 hypothetical protein trmU [imported] - Agrobacterium tumefaciens (strain C58, Dupont) gi|159141000|gb|AAK89702.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Agrobacterium tumefaciens str. C58] Length = 380 Score = 483 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 222/377 (58%), Positives = 279/377 (74%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSVVA +LKR+GYDV+G+TLQLY+ A R GSCCAGQD+ DARRVC+T+ + Sbjct: 1 MSGGVDSSVVAGILKREGYDVLGITLQLYDHGAAVHRAGSCCAGQDIDDARRVCETLGIP 60 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 HYV DYE RFR VI PFA +YA GETP+PCV CN+TVKF+DLL+ ++LGAD LATGHY Sbjct: 61 HYVLDYEARFRETVINPFAEAYAMGETPIPCVACNQTVKFADLLATAQELGADALATGHY 120 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 IRSR RR + RP+D +RDQS+FLFATTQ+Q+ LRFPLG + K R LA E Sbjct: 121 IRSRPNPVSGQPGRRALYRPIDSDRDQSWFLFATTQEQIDYLRFPLGGLSKAETRALAEE 180 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 MGL +A K+DSQDICFV QGKY D++ ++ AL GDIVHL+G++LGRH+GI++YTIGQ Sbjct: 181 MGLVVAKKADSQDICFVPQGKYTDIINKLKPNAALAGDIVHLDGRVLGRHDGIVHYTIGQ 240 Query: 267 RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKC 326 RRG+GVA GEPL+VV+LD RVIVGPRE+LE R+YLR++NWLGDG GF C Sbjct: 241 RRGIGVATGEPLYVVHLDARGRRVIVGPREALETRRVYLRDMNWLGDGALAADAGQGFTC 300 Query: 327 FVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 F K+RS++ P + +++G+YVD E GVA GQACV Y++ +ARV GGG I S Sbjct: 301 FAKVRSTRPPTEAVLHADENGIYVDLMTGEAGVAPGQACVLYSAPGPDARVYGGGFIDRS 360 Query: 387 KRSDAVEESLLSVIGDE 403 +RS E SL +++ Sbjct: 361 ERSVDAEASLKALLEKP 377 >gi|260582389|ref|ZP_05850181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae NT127] gi|260094540|gb|EEW78436.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae NT127] Length = 418 Score = 483 bits (1245), Expect = e-134, Method: Composition-based stats. Identities = 127/388 (32%), Positives = 207/388 (53%), Gaps = 29/388 (7%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 +L L N +V+ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 47 PQLTQEQLASNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 102 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 103 CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 162 Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 L LGAD +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ Sbjct: 163 KAFLEYAAEDLGADYIATGHYVRRA---GDNENAK--LLRGLDPNKDQSYFLYTLSHKQV 217 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R A GDI Sbjct: 218 GQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGDI 275 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297 ++G+I+GRH+G++ +T+GQR+GLG+ E +VV D ++ +IV Sbjct: 276 RTVDGEIIGRHDGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR 335 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356 L + +++W+ + + + +C VK R Q +P ++ DD + V F++ + Sbjct: 336 LFSKGLIASQLHWVD----REPIRELLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQ 391 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGGII+ Sbjct: 392 SAVTPGQSAVFYLCEV----CLGGGIIA 415 >gi|205822016|sp|Q12N64|MNMA_SHEDO RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 372 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 126/379 (33%), Positives = 194/379 (51%), Gaps = 27/379 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +V+V MSGGVDSSV A LL + GY+V G+ ++ + + C A D+ DA+ V Sbjct: 10 GKKVIVGMSGGVDSSVSAYLLMQQGYEVEGLFMKNWEEDDTDE---YCAAADDLKDAQAV 66 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGA 138 CD + + + ++ + + V F + Y AG TP P + CN+ +KF L L A Sbjct: 67 CDKLGIKMHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADDILDA 126 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +A GHY+R R D+ M R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 127 DYIAMGHYVRRR----DNSDGSVQMLRGVDGNKDQSYFLYTLSHEQVARSLFPVGELEKH 182 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VRD+A++MGL DK DS ICF+ + K+ D + A GDI G+++G+H G Sbjct: 183 EVRDIAKQMGLITHDKKDSTGICFIGERKFTDFLATYLP--AQPGDIETPEGEVIGKHQG 240 Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINW 310 ++ +T+GQR+GLG+ +P +VV D + +IV G L + + +++W Sbjct: 241 LMYHTLGQRKGLGIGGLKDSNEDPWYVVEKDLLRNVLIVAQGGNHPRLMSQGMTVNQLHW 300 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYT 369 + + VK R Q VP + +D + V F+ V GQ+ VFY Sbjct: 301 VD----RKGPATDSQLVVKTRYRQTDVPCRISFDDPQRITVIFDSPVAAVTPGQSAVFYD 356 Query: 370 SDSNEARVLGGGIISGSKR 388 D LGGGII R Sbjct: 357 GDV----CLGGGIIDSLIR 371 >gi|110802009|ref|YP_699068.1| tRNA-specific 2-thiouridylase MnmA [Clostridium perfringens SM101] gi|123047295|sp|Q0SS39|MNMA_CLOPS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|110682510|gb|ABG85880.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium perfringens SM101] Length = 359 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 140/368 (38%), Positives = 212/368 (57%), Gaps = 15/368 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARR 78 +VV+ MSGGVDSSV A LLK GYDVIGVT+Q++ K +R+G CC+ V DARR Sbjct: 3 KKKVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARR 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V +++ YV ++ + F+ VI F Y G TP PC+ CN+ +KF +LL + +GA Sbjct: 63 VAQKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGA 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + ++ R + R D +DQ+Y L+ TQ+QL P G+ K+ Sbjct: 123 DYVATGHYAKI-----EERDGRFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKD 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A+E+GLD+ +K DS++ICF+ + + G+ V G +LG+H G Sbjct: 178 KIREIAKEIGLDVHNKKDSEEICFIPDNNHGRYICEAAPNKVRTGNFVDKYGNVLGKHKG 237 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I+ YTIGQR+GLG+A+G P+FV ++ ++ V+VGP E + + ++IN++ D Sbjct: 238 IVYYTIGQRKGLGLALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISI----D 293 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + D + KIR S P + ++G V V FE + + GQ+ VFY D V Sbjct: 294 KLEDPMEVEAKIRYSAKPAKATISPMENGRVKVSFEDKQRAITKGQSVVFYKDD----LV 349 Query: 378 LGGGIISG 385 +GGGII Sbjct: 350 VGGGIIES 357 >gi|28806117|dbj|BAC59393.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Vibrio parahaemolyticus RIMD 2210633] Length = 362 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 121/370 (32%), Positives = 192/370 (51%), Gaps = 28/370 (7%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LLK+ GY V G+ ++ + + C A +D+ DA+ VCD + + Sbjct: 1 MSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDNEE---YCTAAEDLADAQAVCDKLGIH 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGH 145 + ++ + + V F + Y AG TP P + CN+ +KF L + L AD +A GH Sbjct: 58 LHTINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKEIKFKAFLEFADEVLEADYIAMGH 117 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y+R + + M R +D +DQSYFL+ + +Q+ FP+GD++K VR +A Sbjct: 118 YVRRSF---PENGEKPQMLRGLDSNKDQSYFLYTLSHEQVARSLFPVGDLEKPEVRRIAE 174 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 E GL A K DS ICF+ + K+ + + R A G+I G+++G+H G++ +T+G Sbjct: 175 EQGLITAKKKDSTGICFIGERKFTEFLGRYLP--AQPGNIETPEGEVIGQHQGLMYHTLG 232 Query: 266 QRRGLGVAM-------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315 QR+GL + +P FV D + + +I L+ + +++W+ Sbjct: 233 QRKGLHIGGRKGGGGNEDPWFVGEKDLDRNVLIAVQGKDHPMLKSEGLLASQLHWVD--- 289 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNE 374 + + D KC VK R Q +P + DD + V F++ ++ V GQ+ VFY D Sbjct: 290 -REPIRDVMKCTVKTRYRQQDIPCTIIPIDDENIKVIFDEPQIAVTPGQSAVFYKDDV-- 346 Query: 375 ARVLGGGIIS 384 LGGGII Sbjct: 347 --CLGGGIIE 354 >gi|148652768|ref|YP_001279861.1| tRNA-specific 2-thiouridylase MnmA [Psychrobacter sp. PRwf-1] gi|205816892|sp|A5WE20|MNMA_PSYWF RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|148571852|gb|ABQ93911.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Psychrobacter sp. PRwf-1] Length = 398 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 134/405 (33%), Positives = 206/405 (50%), Gaps = 29/405 (7%) Query: 1 MVVSEATRLNSLDLD-------KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ 53 M S N+ +L NP RVVV MSGGVDSSV A LL++ G+ V G+ ++ Sbjct: 1 MTTSTGFDNNAYNLPALRLSDVPNPAQTRVVVGMSGGVDSSVSAVLLQQAGFQVEGLFMK 60 Query: 54 LYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET 113 + ++ C A +D+ DA+ VCD I ++ + ++ + + V F + Y AG T Sbjct: 61 NWEEDDGTE---YCTAMEDLADAQAVCDKIGINLHTANFAMEYWDRVFEHFLAEYQAGRT 117 Query: 114 PLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRL-YVGDDGKRRRIMCRPMDLERD 172 P P + CN+ +KF L LGAD +ATGHY R + Y +DG + R +D +D Sbjct: 118 PNPDILCNKEIKFKAFLDYAVTLGADYIATGHYTRRSVNYTREDGLEVAHLMRGLDNNKD 177 Query: 173 QSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV 232 QSYFL A ++ FP+G+++K VR +A E L A K DS ICF+ + ++ D + Sbjct: 178 QSYFLHAVGGDKIAKTLFPVGELEKPEVRRIAEEHDLITAKKKDSTGICFIGERRFKDFL 237 Query: 233 KRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNS 287 ++ A G+IV +G +G+H+G++ YT+GQR G+G+ EP FV+ D ++ Sbjct: 238 QQYLP--AKPGNIVTDDGITIGKHDGLMYYTLGQRGGIGIGGVKDRPEEPWFVLQKDLSN 295 Query: 288 SRVIVGP---RESLEVHRIYLREINWL-GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR 343 + +IVG L R+ +++W+ G KC K R Q V Sbjct: 296 NELIVGQGHDHPMLLSQRLTAYKLDWVERIAPAAIFSEQGLKCMAKTRYRQPDQSCTVFA 355 Query: 344 NDD---GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385 + D V V F++ + V GQ+ VFY + LGGG+I Sbjct: 356 DSDDGSRVKVIFDEPQRAVTPGQSAVFYIGEV----CLGGGVIES 396 >gi|226951365|ref|ZP_03821829.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter sp. ATCC 27244] gi|226837887|gb|EEH70270.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter sp. ATCC 27244] Length = 377 Score = 483 bits (1244), Expect = e-134, Method: Composition-based stats. Identities = 124/379 (32%), Positives = 205/379 (54%), Gaps = 23/379 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ V Sbjct: 2 QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTALEDLADAQAV 58 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + + ++ + + V F + YAAG TP P + CN+ +KF L LGAD Sbjct: 59 ADKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGAD 118 Query: 140 VLATGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R + + G+ + R +D +DQ+YFL A +++ FP+G+++K Sbjct: 119 FIATGHYARRGASMQNSRGETYAPLLRGVDNNKDQTYFLHAVHGREISKTLFPVGEIEKP 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E+ L A K DS ICF+ + ++ D +K+ A G IV NG+ +G H+G Sbjct: 179 QVRKIAEELDLATAKKKDSTGICFIGERRFSDFLKQYLP--AQAGKIVLDNGKEVGEHHG 236 Query: 259 IINYTIGQR-----RGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 ++ YT+GQR G+ A FV++ D ++R+++G ++ +++ I+W Sbjct: 237 LMYYTLGQRGGIGIGGMKGAQEGAWFVLHKDVANNRLVIGQGHEHPLMQSTQLWSESIDW 296 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND---DGVYVDFEKSEVGVASGQACVF 367 + ++ GF+C K R Q + R+D +G+ V+F++ + V GQ+ VF Sbjct: 297 VAGE--QEIPTSGFRCTAKTRYRQPDQACTIYRDDHNENGIRVEFDEPQRAVTPGQSVVF 354 Query: 368 YTSDSNEARVLGGGIISGS 386 Y+ + LGGG+I + Sbjct: 355 YSGEV----CLGGGVIHHT 369 >gi|17547442|ref|NP_520844.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia solanacearum GMI1000] gi|24638316|sp|Q8XVV4|MNMA_RALSO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|17429745|emb|CAD16430.1| probable trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase protein [Ralstonia solanacearum GMI1000] Length = 370 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 130/387 (33%), Positives = 195/387 (50%), Gaps = 28/387 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ + S+ C QD D Sbjct: 2 SGKRVVVGMSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I V ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADLIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R + R + + D +DQSYFL Q QL FPLG+M K Sbjct: 119 DTIATGHYARVR-----EAGGRFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEMPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A E+GL A K DS ICF+ + + D + R G I +G+ +G+H G Sbjct: 174 RVREIAAEIGLPNARKKDSTGICFIGERPFRDFLNRYLP--TKPGPIRTPDGKTIGQHIG 231 Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT+GQR+G+G+ G+ +V D ++ + V L H ++ +++W Sbjct: 232 LAFYTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVAQGHDHPWLLAHTVHADDLSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + +G + K R Q P V R D + + F++++ V GQ+ V Y Sbjct: 292 VAGH----PPAEGTQLAAKTRYRQADAPCAVTRATGDALTLTFQQAQWAVTPGQSAVLYD 347 Query: 370 SDSNEARVLGGGIISGSKRSDAVEESL 396 D LGGGII+ ++ + ++E+++ Sbjct: 348 GDI----CLGGGIIASTE-AASLEQAV 369 >gi|168214260|ref|ZP_02639885.1| tRNA -methyltransferase [Clostridium perfringens CPE str. F4969] gi|170714272|gb|EDT26454.1| tRNA -methyltransferase [Clostridium perfringens CPE str. F4969] Length = 359 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 139/368 (37%), Positives = 210/368 (57%), Gaps = 15/368 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARR 78 +VV+ MSGGVDSSV A LLK GYDVIGVT+Q++ K +R+G CC+ V DARR Sbjct: 3 KKKVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARR 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V +++ YV ++ + F+ VI F Y G TP PC+ CN+ +KF +LL + +GA Sbjct: 63 VAQKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGA 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + ++ R + R D +DQ+Y L+ TQ+QL P G+ K+ Sbjct: 123 DYVATGHYAKI-----EERDGRFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKD 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A+E+GLD+ +K DS++ICF+ + + G+ V G LG+H G Sbjct: 178 KIREIAKEIGLDVHNKKDSEEICFIPDNNHGRYICEAAPNKVRPGNFVDKYGNALGKHKG 237 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I+ YTIGQR+GLG+A+G P+FV ++ ++ V+VGP E + + ++IN++ D Sbjct: 238 IVYYTIGQRKGLGLALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISI----D 293 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + KIR S P + ++G V V FE + + GQ+ VFY D V Sbjct: 294 KLEGPMEVEAKIRYSARPAKATISPMENGRVKVSFEDKQRAITKGQSVVFYKDD----LV 349 Query: 378 LGGGIISG 385 +GGGII Sbjct: 350 VGGGIIES 357 >gi|325577519|ref|ZP_08147881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus parainfluenzae ATCC 33392] gi|325160623|gb|EGC72747.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus parainfluenzae ATCC 33392] Length = 384 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 128/388 (32%), Positives = 206/388 (53%), Gaps = 29/388 (7%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 +L L +N +V+ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 12 PQLTQEQLARNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 67 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 68 CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 127 Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 L LGA +ATGHY+R GDD + + R +D +DQSYFL+ + +Q+ Sbjct: 128 KAFLEYAAEDLGAHYIATGHYVRRA---GDDENAK--LLRGLDANKDQSYFLYTLSHKQV 182 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+G+++K VR +A E+GL A K DS ICF+ + K+ D + R A GDI Sbjct: 183 GQSLFPVGEIEKPIVRAIAEELGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGDI 240 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297 ++G+I+GRH+G++ +T+GQR+GLG+ E +VV D ++ +IV Sbjct: 241 RTVDGEIIGRHDGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR 300 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356 L + +++W+ + + + +C VK R Q +P ++ DD + V F++ + Sbjct: 301 LFSKGLIASQLHWVD----REPIRELVRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQ 356 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGGII Sbjct: 357 SAVTPGQSAVFYLGEI----CLGGGIIE 380 >gi|182625650|ref|ZP_02953419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium perfringens D str. JGS1721] gi|177909052|gb|EDT71527.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium perfringens D str. JGS1721] Length = 359 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 138/368 (37%), Positives = 210/368 (57%), Gaps = 15/368 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARR 78 +VV+ MSGGVDSSV A LLK GYDVIGVT+Q++ K +R+G CC+ V DARR Sbjct: 3 KKKVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARR 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V +++ YV ++ + F+ VI F Y G TP PC+ CN+ +KF +LL + +GA Sbjct: 63 VAQKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGA 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + ++ R + R D +DQ+Y L+ TQ+QL P G+ K+ Sbjct: 123 DYVATGHYAKI-----EERDGRFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKD 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A+E+GLD+ +K DS++ICF+ + + G+ V G +LG+H G Sbjct: 178 KIREIAKEIGLDVHNKKDSEEICFIPDNNHGRYICEAAPNKVRPGNFVDKYGNVLGKHKG 237 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I+ YTIGQR+GLG+A+G P+FV ++ ++ V+VGP E + + ++IN++ D Sbjct: 238 IVYYTIGQRKGLGLALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISI----D 293 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + KIR S P + ++ V V FE + + GQ+ VFY D V Sbjct: 294 KLEGPMEVEAKIRYSARPAKATISPMENVRVKVSFEDKQRAITKGQSVVFYKDD----LV 349 Query: 378 LGGGIISG 385 +GGGII Sbjct: 350 VGGGIIES 357 >gi|329297165|ref|ZP_08254501.1| tRNA-specific 2-thiouridylase MnmA [Plautia stali symbiont] Length = 370 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 125/378 (33%), Positives = 193/378 (51%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAADDLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGIKLHKINFAAEYWDNVFEHFLEEYKAGRTPNPDILCNKEIKFKAFLEFAADD 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R D + R +D +DQSYFL+ + QQ+ FP+G + Sbjct: 120 LGADYIATGHYVRRA-----DVDGTSQLLRGLDGNKDQSYFLYTLSHQQIAQSLFPVGKL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A ++ L A K DS ICF+ + K+ D + R A G I ++G+++G Sbjct: 175 EKPEVRRIAEQLDLITAKKKDSTGICFIGERKFRDFLGRYLP--AQPGVIETVDGEVVGE 232 Query: 256 HNGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ + P +VV D + +IV G L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGRKESSDDPWYVVDKDVARNTLIVAQGGDHPRLMSVGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACV 366 ++W+ V +C VK R Q +P + DD + V F++ V GQ+ V Sbjct: 293 LHWVD----RQPVTAALRCTVKTRYRQSDIPCEIIPHGDDRIEVRFDEPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY D LGGGII Sbjct: 349 FYLGDV----CLGGGIIE 362 >gi|329123820|ref|ZP_08252378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus aegyptius ATCC 11116] gi|327469307|gb|EGF14778.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus aegyptius ATCC 11116] Length = 418 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 126/388 (32%), Positives = 205/388 (52%), Gaps = 29/388 (7%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 +L L N +V+ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 47 PQLTQEQLASNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 102 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 103 CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 162 Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 L LGAD +ATGHY+R GDD + + R +D +DQSYFL+ + +Q+ Sbjct: 163 KAFLEYAAEDLGADYIATGHYVRRA---GDDENAK--LLRGLDANKDQSYFLYTLSHKQV 217 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+G ++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 218 GQSLFPVGKIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 275 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297 ++ +I+GRH+G++ +T+GQR+GLG+ E +VV D ++ +IV Sbjct: 276 RTVDDEIIGRHDGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR 335 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356 L + +++W+ + + + +C VK R Q +P ++ DD + V F++ + Sbjct: 336 LFSKGLIASQLHWVD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQ 391 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGGII+ Sbjct: 392 SAVTPGQSAVFYLGEV----CLGGGIIA 415 >gi|292488015|ref|YP_003530892.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erwinia amylovora CFBP1430] gi|292899233|ref|YP_003538602.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erwinia amylovora ATCC 49946] gi|291199081|emb|CBJ46192.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erwinia amylovora ATCC 49946] gi|291553439|emb|CBA20484.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erwinia amylovora CFBP1430] Length = 369 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 119/378 (31%), Positives = 198/378 (52%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ G+ V G+ ++ + + C A +D+ DA Sbjct: 2 SNSQKKVIVGMSGGVDSSVSAWLLQQQGFQVEGLFMKNWEEEDGEE---YCTAAEDLADA 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQ 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 59 QAVCDKLGIYLHTINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEYAAED 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + D + + R +D +DQSYFL+ + QQ+ FP+G++ Sbjct: 119 LGADYIATGHYVRRQ-----DVDGKSRLLRGLDGNKDQSYFLYTLSHQQIAQSLFPVGEL 173 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K VR +A ++ L A K DS ICF+ + K+ + + R A G I+ ++G +G+ Sbjct: 174 AKPEVRRIAEQLELVTAKKKDSTGICFIGERKFTEFLARYLP--AQPGAIISVDGVNVGQ 231 Query: 256 HNGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ + P +VV D ++ ++V L + ++ Sbjct: 232 HQGLMYHTLGQRKGLGIGGRKEANEDPWYVVDKDVTNNLLVVAQGHDHPRLMSQGLTAQQ 291 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366 ++W+ + + +C VK R Q+ +P V D + + V F+ V GQ+ V Sbjct: 292 LHWVD----RNVLSAPLRCAVKTRYRQEDIPCTVIPLDAERIEVRFDYPVAAVTPGQSAV 347 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 348 FYLDEV----CLGGGIIE 361 >gi|170755439|ref|YP_001780808.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum B1 str. Okra] gi|205810574|sp|B1IIY2|MNMA2_CLOBK RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|169120651|gb|ACA44487.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum B1 str. Okra] Length = 356 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 139/368 (37%), Positives = 209/368 (56%), Gaps = 15/368 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78 +V+V MSGGVDSSV A LLK GY+VIGVT+Q++ + + +++G CC+ V DARR Sbjct: 2 KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARR 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + I + YV ++++ F+ VI F Y G TP PC+ CN+ +KFS L +G Sbjct: 62 VANKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAMGI 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + R I+ + D +DQ+Y L+ TQ QL P G KK Sbjct: 122 DYVATGHYAIIEKHND-----RYIIKKSEDDRKDQTYALYNLTQFQLERTLMPCGQYKKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A+E+GL + +K DS++ICF+ + +K EG+ V G ILG H G Sbjct: 177 KIREIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNILGTHKG 236 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I+ YTIGQR+GLG+A G+P++VV ++ + V++G E L + ++IN++ D Sbjct: 237 IVYYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDINYI----PFD 292 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + D + KIR SQ P + +DG V V+F + + + GQ+ VFY D + Sbjct: 293 TLKDPMEVEAKIRYSQTPSKAIITPIEDGRVRVNFHEKQRAITKGQSVVFYKDD----LL 348 Query: 378 LGGGIISG 385 +GGGII Sbjct: 349 IGGGIIEK 356 >gi|326201928|ref|ZP_08191798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium papyrosolvens DSM 2782] gi|325987723|gb|EGD48549.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium papyrosolvens DSM 2782] Length = 359 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 131/368 (35%), Positives = 207/368 (56%), Gaps = 14/368 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDAR 77 +V++ MSGGVDSSV AA+L + GY+VIGVTLQ++ K +G CC+ V DAR Sbjct: 3 PKKVMLGMSGGVDSSVAAAILLKQGYEVIGVTLQIWQDMDEERQKSEGGCCSLSAVDDAR 62 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV + + + +YV ++++ F VI F Y G TP PC+ CNR VK+ +L +G Sbjct: 63 RVANKLGIPYYVLNFKDIFNKTVIEYFKEEYFKGRTPNPCIACNRHVKWQAMLDKALSMG 122 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D +ATGHY + + D R I+ + + +DQ+Y L+ TQQQL P+GD K Sbjct: 123 IDYIATGHYAK---VMQDAKTGRFILKKSVTDRKDQTYALYNLTQQQLSHTLMPVGDYTK 179 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + +R++A+E+GL +A K DSQ+ICF+ Y + + G + G +LG H Sbjct: 180 DEIREIAKEIGLSVATKPDSQEICFIHDNDYGKFLSENCDKKIVPGKFLDTKGNVLGNHK 239 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI++YT+GQR+GLG+A G+P+FVV ++ ++ V++G + + ++N++ Sbjct: 240 GIVHYTVGQRKGLGIAFGKPMFVVAVNPENNTVVLGDDSEVFSETLTASDLNFISI---- 295 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 +DG + KIR S P + +++ + V F+ + + GQ+ VFY D Sbjct: 296 PKPIDGMRVNAKIRYSAKEAPATINVIDENRISVVFDIPQRAITPGQSVVFYDGDV---- 351 Query: 377 VLGGGIIS 384 V+GGG I Sbjct: 352 VVGGGTIE 359 >gi|168207849|ref|ZP_02633854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium perfringens E str. JGS1987] gi|169343749|ref|ZP_02864748.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium perfringens C str. JGS1495] gi|169298309|gb|EDS80399.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium perfringens C str. JGS1495] gi|170660837|gb|EDT13520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium perfringens E str. JGS1987] Length = 359 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 139/368 (37%), Positives = 211/368 (57%), Gaps = 15/368 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARR 78 +VV+ MSGGVDSSV A LLK GYDVIGVT+Q++ K +R+G CC+ V DARR Sbjct: 3 KKKVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARR 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V +++ YV ++ + F+ VI F Y G TP PC+ CN+ +KF +LL + +GA Sbjct: 63 VAQKLDIPFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGA 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + ++ R + R D +DQ+Y L+ TQ+QL P G+ K+ Sbjct: 123 DYVATGHYAKI-----EERDGRFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKD 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A+E+GLD+ +K DS++ICF+ + + G+ V G +LG+H G Sbjct: 178 KIREIAKEIGLDVHNKKDSEEICFIPDNNHGRYICEAAPNKVRPGNFVDKYGNVLGKHKG 237 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I+ YTIGQR+GLG+A+G P+FV ++ ++ V+VGP E + + ++IN++ D Sbjct: 238 IVYYTIGQRKGLGLALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISI----D 293 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + KIR S P + ++G V V FE + + GQ+ VFY D V Sbjct: 294 KLEGHMEVEAKIRYSARPAKATISPMENGRVKVSFEDKQRAITKGQSVVFYKDD----LV 349 Query: 378 LGGGIISG 385 +GGGII Sbjct: 350 VGGGIIES 357 >gi|68248779|ref|YP_247891.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus influenzae 86-028NP] gi|68056978|gb|AAX87231.1| probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae 86-028NP] Length = 397 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 125/388 (32%), Positives = 207/388 (53%), Gaps = 29/388 (7%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 +L L +N +V+ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 26 PQLTQEQLARNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 81 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 82 CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 141 Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 L LGAD +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ Sbjct: 142 KAFLEYAAEDLGADYIATGHYVRRA---GDNENAK--LLRGLDANKDQSYFLYTLSHKQV 196 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 197 GQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 254 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297 ++ +I+GRH+G++ +T+GQR+GLG+ E +VV D ++ +IV Sbjct: 255 RTVDDEIIGRHDGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR 314 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356 L + +++W+ + + + +C VK R Q +P ++ DD + V F++ + Sbjct: 315 LFSKGLIASQLHWVD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQ 370 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGGII+ Sbjct: 371 SAVTPGQSAVFYLGEV----CLGGGIIA 394 >gi|145637334|ref|ZP_01792994.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae PittHH] gi|145269426|gb|EDK09369.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae PittHH] Length = 383 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 127/388 (32%), Positives = 207/388 (53%), Gaps = 29/388 (7%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 +L L N +V+ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 12 PQLTQEQLASNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 67 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 68 CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 127 Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 L LGAD +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ Sbjct: 128 KAFLEYAAEDLGADYIATGHYVRRA---GDNENAK--LLRGLDANKDQSYFLYTLSHKQV 182 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R A GDI Sbjct: 183 GQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGDI 240 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297 ++G+I+GRH+G++ +T+GQR+GLG+ E +VV D ++ +IV Sbjct: 241 RTVDGEIIGRHDGLMYHTLGQRKGLGIGGLKNTGDEAWYVVDKDVENNELIVAQGHDHPR 300 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSE 356 L + +++W+ + + + +C VK R Q +P ++ DD + V F++ + Sbjct: 301 LFSKGLIAGQLHWVD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDEIIRVIFDEPQ 356 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGGII+ Sbjct: 357 SAVTPGQSAVFYLGEV----CLGGGIIA 380 >gi|323485784|ref|ZP_08091119.1| hypothetical protein HMPREF9474_02870 [Clostridium symbiosum WAL-14163] gi|323693136|ref|ZP_08107354.1| hypothetical protein HMPREF9475_02217 [Clostridium symbiosum WAL-14673] gi|323400772|gb|EGA93135.1| hypothetical protein HMPREF9474_02870 [Clostridium symbiosum WAL-14163] gi|323502619|gb|EGB18463.1| hypothetical protein HMPREF9475_02217 [Clostridium symbiosum WAL-14673] Length = 359 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 137/368 (37%), Positives = 205/368 (55%), Gaps = 14/368 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDA 76 + +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + + G CC V DA Sbjct: 2 EKKKVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEEPEIQEENGGCCGLSAVDDA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV + + + +YV +++ F+ V+ F Y G+TP PC+ CNR VK+ LL + + Sbjct: 62 RRVAENLGIPYYVMNFKREFKENVMDYFVQEYIEGKTPNPCIACNRFVKWESLLKRSMDI 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R R + + +DQ+Y L+ TQ QL P+G+ Sbjct: 122 GADYIATGHYARIEQL----ENGRYTLRKSATAAKDQTYALYNLTQHQLSHTLMPVGEYT 177 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ +R +A ++GL++A K DSQ+ICF+ Y ++ EG+ V +G++LGRH Sbjct: 178 KDEIRGMADKIGLNVAHKPDSQEICFIPDHDYAKFIEENTDCRLPEGNFVDKDGRVLGRH 237 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GI +YT+GQR+GL +A+G P+FV + +++ V++G E + R+ ++NW+ Sbjct: 238 KGITHYTVGQRKGLNLALGRPVFVTEIRPDTNEVVIGDNEDVFSRRLTCGKLNWMA---V 294 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 E DG K KIR S P ++ +D V F+ + GQA VFY + Sbjct: 295 EGLPDDGMKVTAKIRYSHKGAPCMIRTIGEDLVECVFDDPQRAATPGQAVVFYDGE---- 350 Query: 376 RVLGGGII 383 V+GGG I Sbjct: 351 YVVGGGTI 358 >gi|126667269|ref|ZP_01738242.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Marinobacter sp. ELB17] gi|126628214|gb|EAZ98838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Marinobacter sp. ELB17] Length = 374 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 129/381 (33%), Positives = 188/381 (49%), Gaps = 23/381 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LLK GY V G+ ++ ++ ++ C A D+ DA+ V D I + Sbjct: 1 MSGGVDSSVAAWLLKEQGYQVEGLFMKNWDEDDGTE---YCTAMTDLADAQAVADHIGIK 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 + + + + V F S Y AG TP P + CN+ VKF L LGAD +ATGHY Sbjct: 58 LHTASFAAEYWDRVFEHFLSEYKAGRTPNPDILCNKEVKFRAFLDYAITLGADYIATGHY 117 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 R DDG + + + +D +DQSYFL A + ++ FP+G+++K VR +A Sbjct: 118 TRQCPL--DDGSGKAQLLKGLDDNKDQSYFLHAVSGDRIARTLFPVGELEKPEVRRIAEA 175 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 GL DK DS ICF+ + K+ D +K+ A G I G I+GRH G++ +TIGQ Sbjct: 176 QGLVTHDKKDSTGICFIGERKFTDFLKQYLP--AQPGTIETPEGDIIGRHQGLMYHTIGQ 233 Query: 267 RRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFED 318 R+GLG+ EP +V D + +I L + ++W+ + Sbjct: 234 RQGLGIGGLNGYSDEPWYVAEKDLARNVLIAAQGKNHPLLFSRGLVSGPVDWVA----AE 289 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 A F+C K R Q V D GV V F+ ++ V GQ+ VFY + L Sbjct: 290 APSAKFRCMAKTRYRQPDQLCEVTVIDGGVKVVFDDAQRAVTPGQSAVFYDGEI----CL 345 Query: 379 GGGIISGSKRSDAVEESLLSV 399 GGG+I + R + L+ Sbjct: 346 GGGVIEHTWRDGEPLPARLTT 366 >gi|294650884|ref|ZP_06728231.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter haemolyticus ATCC 19194] gi|292823302|gb|EFF82158.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter haemolyticus ATCC 19194] Length = 377 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 124/379 (32%), Positives = 205/379 (54%), Gaps = 23/379 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ V Sbjct: 2 QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTALEDLADAQAV 58 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + + ++ + + V F + YAAG TP P + CN+ +KF L LGAD Sbjct: 59 ADKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGAD 118 Query: 140 VLATGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R + + G+ + R +D +DQ+YFL A +++ FP+G+++K Sbjct: 119 FIATGHYARRGASMQNSRGETYAPLLRGVDNNKDQTYFLHAVHGREINKTLFPVGEIEKP 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E+ L A K DS ICF+ + ++ D +K+ A G IV NG+ +G H+G Sbjct: 179 QVRKIAEELDLATAKKKDSTGICFIGERRFSDFLKQYLP--AQAGKIVLDNGKEVGEHHG 236 Query: 259 IINYTIGQR-----RGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 ++ YT+GQR G+ A FV++ D ++R+++G ++ +++ I+W Sbjct: 237 LMYYTLGQRGGIGIGGMKGAQEGAWFVLHKDVANNRLVIGQGHEHPLMQSTQLWSESIDW 296 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND---DGVYVDFEKSEVGVASGQACVF 367 + ++ GF+C K R Q + R+D +G+ V+F++ + V GQ+ VF Sbjct: 297 VAGE--QEIPTSGFRCTAKTRYRQPDQACTIYRDDHNENGIRVEFDEPQRAVTPGQSVVF 354 Query: 368 YTSDSNEARVLGGGIISGS 386 Y+ + LGGG+I + Sbjct: 355 YSGEV----CLGGGVIHHT 369 >gi|323340632|ref|ZP_08080884.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus ruminis ATCC 25644] gi|323091755|gb|EFZ34375.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus ruminis ATCC 25644] Length = 375 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 132/384 (34%), Positives = 195/384 (50%), Gaps = 25/384 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLKR GYDV+GV ++ ++ +K S G C +D D +V + Sbjct: 8 RVVVGMSGGVDSSVCAYLLKRQGYDVVGVFMKNWDEKKDS---GVCTVTEDYQDVAKVAN 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + +Y ++E+ + + V F Y G TP P V CN+ VKF L +L AD + Sbjct: 65 EIGIPYYSVNFEKEYWDGVFTYFLDEYRHGRTPNPDVMCNKEVKFKAFLDYAMELDADYI 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 A GHY + + DDG + R D +DQ+YFL + +QL FP+G M+K VR Sbjct: 125 AMGHYAQIKR--DDDGTVH--LMRGADQNKDQTYFLSQLSGKQLEKAMFPIGGMQKSEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A++ GL ADK DS +CF+ + + + A G ++ G+ G H G++N Sbjct: 181 EIAKKAGLATADKKDSTGVCFIGERNFSKFLSEFLP--AKPGKMMTFEGEYKGEHFGLMN 238 Query: 262 YTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDG 314 YTIGQRRGLG+ EP FVV D ++ + VG E L + +++++ Sbjct: 239 YTIGQRRGLGIGGDGKSNEPWFVVGKDLKTNTLYVGQGYHNEHLYATSLDATKLSFVA-- 296 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDS 372 + F C K R Q V V ND+ V V F+ + GQ VFY + Sbjct: 297 -PIEDRGQSFHCTAKFRYRQKDSGVTVNFNDERNKVEVVFDNPVRAITPGQEIVFYDGE- 354 Query: 373 NEARVLGGGIISGSKRSDAVEESL 396 LG G I + ++ + + + Sbjct: 355 ---ECLGSGTIDHAYQNGRLLQYV 375 >gi|8039809|sp|P44551|MNMA_HAEIN RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 383 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 125/388 (32%), Positives = 207/388 (53%), Gaps = 29/388 (7%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 +L L +N +V+ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 12 PQLTQEQLARNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 67 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 68 CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 127 Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 L LGAD +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ Sbjct: 128 KAFLEYAAEDLGADYIATGHYVRRA---GDNENAK--LLRGLDPNKDQSYFLYTLSHKQV 182 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 183 GQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 240 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297 ++ +I+GRH+G++ +T+GQR+GLG+ E +VV D ++ +IV Sbjct: 241 RTVDDEIIGRHDGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR 300 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356 L + +++W+ + + + +C VK R Q +P ++ DD + V F++ + Sbjct: 301 LFSKGLIASQLHWVD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQ 356 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGGII+ Sbjct: 357 SAVTPGQSAVFYLGEV----CLGGGIIA 380 >gi|310767364|gb|ADP12314.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erwinia sp. Ejp617] Length = 369 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 116/378 (30%), Positives = 194/378 (51%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ G+ V G+ ++ + C A +D+ DA Sbjct: 2 SNSQKKVIVGMSGGVDSSVSAWLLQQQGFQVEGLFMKNWEEDDDEA---YCTAAEDLADA 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQ 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 59 QAVCDKLGIYLHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAED 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + D + + R +D +DQSYFL+ + + FP+G++ Sbjct: 119 LGADYIATGHYVRRQ-----DVGGKSRLLRGLDGNKDQSYFLYTLGHEHIAQSLFPVGEL 173 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K VR +A ++ L A K DS ICF+ + K+ + + R A G I+ ++G +G+ Sbjct: 174 AKPEVRRIAEQLKLVTAKKKDSTGICFIGERKFTEFLARYLP--AQPGAIISVDGVNVGQ 231 Query: 256 HNGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ + P +VV D ++ ++V L + ++ Sbjct: 232 HQGLMYHTLGQRKGLGIGGRKEANEDPWYVVDKDVTNNLLVVAQGHDHPRLMSQGLTAQQ 291 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366 ++W+ + +C VK R Q+ +P V D + + V F+ V GQ+ V Sbjct: 292 LHWVDRSVLS----APLRCTVKTRYRQEDIPCTVIPLDAERIEVRFDYPVAAVTPGQSAV 347 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGG+I Sbjct: 348 FYLDEV----CLGGGVIE 361 >gi|71281561|ref|YP_269601.1| tRNA-specific 2-thiouridylase MnmA [Colwellia psychrerythraea 34H] gi|123632113|sp|Q480B8|MNMA_COLP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71147301|gb|AAZ27774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Colwellia psychrerythraea 34H] Length = 375 Score = 481 bits (1240), Expect = e-134, Method: Composition-based stats. Identities = 128/387 (33%), Positives = 192/387 (49%), Gaps = 31/387 (8%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 K P+ +V+V MSGGVDSSV A LLK GY V G+ ++ + + C A QD+ Sbjct: 7 TKAPEQTKVIVGMSGGVDSSVSAYLLKEQGYQVEGLFMKNWEEDDTDE---YCAASQDLE 63 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133 DA+ +CD +++ + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 64 DAQAICDKLDIKLHTINFATEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFAC 123 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY++ L M R +D +DQSYFL+ + QL FP+G Sbjct: 124 EDLGADYIATGHYVQRELRDNS-----WKMIRGLDNNKDQSYFLYTLDEAQLAHTLFPVG 178 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR +A + GL +K DS ICF+ + K+ D + + A G I G + Sbjct: 179 HIEKPEVRAIAEKAGLITHNKKDSTGICFIGERKFKDFLGQYLP--AQPGIIESAEGVAV 236 Query: 254 GRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 G H+G++ +T+GQR+GL + EP +VV D + +IVG L + Sbjct: 237 GHHDGLMYHTLGQRKGLRIGGLADAGEEPWYVVEKDLLRNVLIVGQGHNHPRLFSKGLIA 296 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY----VDFEKSEVGVAS 361 +++W+ A+ +C VK R Q+ V V D +DF + + V Sbjct: 297 NQLHWVD----RKALTSSIQCTVKTRYRQEDVSCTVTPITDSATEEYQIDFTEQQSSVTP 352 Query: 362 GQACVFYTSDSNEARVLGGGIISGSKR 388 GQ+ VFY D LGGGII R Sbjct: 353 GQSVVFYKDDV----CLGGGIIDTLIR 375 >gi|205822340|sp|A9W8W7|MNMA_METEP RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 385 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 208/377 (55%), Positives = 268/377 (71%), Gaps = 8/377 (2%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLDL K P + RVVVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+ A+ RKG+CC Sbjct: 1 MNSLDLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRKGACC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AG+D++DAR V +T+ + HYV DYE+RFR +VI FA SY +GETP+PCV+CNR+VKF D Sbjct: 61 AGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFAESYLSGETPIPCVECNRSVKFRD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL + R LGA+ LATGHY+ SR + R + R +D RDQSYFL+ATT +QL L Sbjct: 121 LLGLARDLGAEALATGHYVASRARP----EGGRALYRALDPARDQSYFLYATTPEQLAYL 176 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG+ K+ R LARE+GL +ADK+DSQDICFV QG Y DV+ ++ G+IV L Sbjct: 177 RFPLGERPKDETRALARELGLAVADKADSQDICFVPQGGYADVIAKLRPEATRPGEIVDL 236 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G+ LG H GII+YT+GQRRGL ++ GEPL+VV L+ ++RV+VGPR +L RI L ++ Sbjct: 237 DGRRLGEHEGIIHYTVGQRRGLKLSAGEPLYVVRLEPETARVVVGPRAALATRRIRLTDL 296 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACV 366 NWLGDG ED V++RS+++P P + N + V+ E GV+ GQACV Sbjct: 297 NWLGDGAPEDIAERP--VAVRVRSTREPRPARLSWNAAEACAEVELLVPEDGVSPGQACV 354 Query: 367 FYTSDSNEARVLGGGII 383 Y D A+VLGGG I Sbjct: 355 IYADDDPRAQVLGGGTI 371 >gi|170760751|ref|YP_001786568.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum A3 str. Loch Maree] gi|205810328|sp|B1KZE1|MNMA1_CLOBM RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 gi|169407740|gb|ACA56151.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A3 str. Loch Maree] Length = 356 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 138/368 (37%), Positives = 212/368 (57%), Gaps = 15/368 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78 +V+V MSGGVDSSV A LLK GY+VIGVT+Q++ + + +++G CC+ V DARR Sbjct: 2 KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARR 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + I + YV ++++ F+ VI F Y G TP PC+ CN+ +KFS L +G Sbjct: 62 VANKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCITCNKFIKFSSFLDKAMAMGI 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + R I+ + D ++DQ+Y L+ TQ QL P G KK Sbjct: 122 DYVATGHYAIIEKHND-----RYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A+E+GL + +K DS++ICF+ + +K EG+ V G +LGRH G Sbjct: 177 KIREIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNVLGRHKG 236 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I+ YTIGQR+GLG+A G+P++VV ++ + V++G E L + ++IN++ D Sbjct: 237 IVYYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDINYI----PFD 292 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + + KIR SQ P + +DG V V+F++ + + GQ+ VFY D + Sbjct: 293 TLKEPMEVEAKIRYSQTPSKAIITPIEDGRVRVNFQEKQRAITKGQSVVFYKDD----LL 348 Query: 378 LGGGIISG 385 +GGGII Sbjct: 349 IGGGIIEK 356 >gi|283478712|emb|CAY74628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erwinia pyrifoliae DSM 12163] Length = 384 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 116/378 (30%), Positives = 194/378 (51%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ G+ V G+ ++ + C A +D+ DA Sbjct: 17 SNSQKKVIVGMSGGVDSSVSAWLLQQQGFQVEGLFMKNWEEDDDEA---YCTAAEDLADA 73 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQ 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 74 QAVCDKLGIYLHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAED 133 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + D + + R +D +DQSYFL+ + + FP+G++ Sbjct: 134 LGADYIATGHYVRRQ-----DMGGKSRLLRGLDGNKDQSYFLYTLGHEHIAQSLFPVGEL 188 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K VR +A ++ L A K DS ICF+ + K+ + + R A G I+ ++G +G+ Sbjct: 189 AKPEVRRIAEQLKLVTAKKKDSTGICFIGERKFTEFLARYLP--AQPGAIISVDGVNVGQ 246 Query: 256 HNGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ + P +VV D ++ ++V L + ++ Sbjct: 247 HQGLMYHTLGQRKGLGIGGRKEANEDPWYVVDKDVTNNLLVVAQGHDHPRLMSQGLTAQQ 306 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366 ++W+ + +C VK R Q+ +P V D + + V F+ V GQ+ V Sbjct: 307 LHWVDRSVLS----ASLRCTVKTRYRQEDIPCTVIPLDAERIEVRFDYPVAAVTPGQSAV 362 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGG+I Sbjct: 363 FYLDEV----CLGGGVIE 376 >gi|259908739|ref|YP_002649095.1| tRNA-specific 2-thiouridylase MnmA [Erwinia pyrifoliae Ep1/96] gi|224964361|emb|CAX55870.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erwinia pyrifoliae Ep1/96] Length = 369 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 116/378 (30%), Positives = 194/378 (51%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ G+ V G+ ++ + C A +D+ DA Sbjct: 2 SNSQKKVIVGMSGGVDSSVSAWLLQQQGFQVEGLFMKNWEEDDDEA---YCTAAEDLADA 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQ 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 59 QAVCDKLGIYLHTVNFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAED 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + D + + R +D +DQSYFL+ + + FP+G++ Sbjct: 119 LGADYIATGHYVRRQ-----DMGGKSRLLRGLDGNKDQSYFLYTLGHEHIAQSLFPVGEL 173 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K VR +A ++ L A K DS ICF+ + K+ + + R A G I+ ++G +G+ Sbjct: 174 AKPEVRRIAEQLKLVTAKKKDSTGICFIGERKFTEFLARYLP--AQPGAIISVDGVNVGQ 231 Query: 256 HNGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ + P +VV D ++ ++V L + ++ Sbjct: 232 HQGLMYHTLGQRKGLGIGGRKEANEDPWYVVDKDVTNNLLVVAQGHDHPRLMSQGLTAQQ 291 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366 ++W+ + +C VK R Q+ +P V D + + V F+ V GQ+ V Sbjct: 292 LHWVDRSVLS----ASLRCTVKTRYRQEDIPCTVIPLDAERIEVRFDYPVAAVTPGQSAV 347 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGG+I Sbjct: 348 FYLDEV----CLGGGVIE 361 >gi|168178604|ref|ZP_02613268.1| tRNA -methyltransferase [Clostridium botulinum NCTC 2916] gi|226948452|ref|YP_002803543.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum A2 str. Kyoto] gi|182670342|gb|EDT82316.1| tRNA -methyltransferase [Clostridium botulinum NCTC 2916] gi|226842334|gb|ACO85000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A2 str. Kyoto] Length = 356 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 137/368 (37%), Positives = 208/368 (56%), Gaps = 15/368 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78 +V+V MSGGVDSSV A LLK GY+VIGVT+Q++ + + +++G CC+ V DARR Sbjct: 2 KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARR 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + I + YV ++++ F+ VI F Y G TP PC+ CN+ +KFS L +G Sbjct: 62 VANKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAMGI 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + R I+ + D ++DQ+Y L+ TQ QL P G KK Sbjct: 122 DYVATGHYAIIEKHND-----RYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A+E+GL + +K DS++ICF+ + +K EG+ V G ILG H G Sbjct: 177 KIREIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNILGTHKG 236 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I+ YTIGQR+GLG+A G+P++VV ++ + V++G E L + ++ N++ D Sbjct: 237 IVYYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDTNYI----PFD 292 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + + KIR SQ P + DD V V+F + + + GQ+ VFY D + Sbjct: 293 TLKEPMEVEAKIRYSQTPSKAIITPIEDDRVRVNFHEKQRAITKGQSVVFYKDD----LL 348 Query: 378 LGGGIISG 385 +GGGII Sbjct: 349 IGGGIIEK 356 >gi|154503928|ref|ZP_02040988.1| hypothetical protein RUMGNA_01754 [Ruminococcus gnavus ATCC 29149] gi|153795527|gb|EDN77947.1| hypothetical protein RUMGNA_01754 [Ruminococcus gnavus ATCC 29149] Length = 356 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 141/365 (38%), Positives = 206/365 (56%), Gaps = 15/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + A + G CC V DARRV Sbjct: 3 KVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEEQAAQEENGGCCGLSAVDDARRV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + +YV ++++ F+ VI F Y G TP PC+ CNR VK+ LL + +GA+ Sbjct: 63 AAALEIPYYVMNFKKEFKENVIDYFVEEYQNGRTPNPCIACNRYVKWESLLQRSLSIGAE 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R + R L +DQ+Y L+ TQ+QL P+G K+ Sbjct: 123 YIATGHYARVVQL----ENGRYTLRRSATLAKDQTYALYNLTQEQLKRTLMPVGKYTKDE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++ L IA+K DSQDICFV G Y ++ EG+ V +G +LGRH GI Sbjct: 179 VRAIAEKINLRIANKPDSQDICFVPDGDYAAYIEEEAGVKVPEGNFVLTDGTVLGRHKGI 238 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YT+GQR+GLG+A+G P FV+ + ++ V++G +E ++ R +N++ + Sbjct: 239 THYTVGQRKGLGLALGYPAFVLEIRPETNEVVIGTKEESMTTQLRARNLNFMAV----ED 294 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + F KIR + +++ +D V F++ + V GQA VFY + VL Sbjct: 295 LTEPLHVFTKIRYNHKGAWCTIEKTGEDEVLCTFDEPQRAVTPGQAVVFYDGE----YVL 350 Query: 379 GGGII 383 GGG I Sbjct: 351 GGGTI 355 >gi|145641507|ref|ZP_01797085.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae R3021] gi|145273798|gb|EDK13666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae 22.4-21] Length = 362 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 124/376 (32%), Positives = 204/376 (54%), Gaps = 28/376 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + +V+ MSGGVDSSV A +L++ GY V G+ ++ + + C A D+ DA+ Sbjct: 2 RQKKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLG 137 VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L LG Sbjct: 59 VCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLG 118 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ FP+G++KK Sbjct: 119 ADYIATGHYVRR---TGDNENAK--LLRGLDANKDQSYFLYTLSHKQVGQSLFPVGEIKK 173 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR +A ++GL A K DS ICF+ + K+ D + R A G+I ++G+I+GRH+ Sbjct: 174 PIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDGEIIGRHD 231 Query: 258 GIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G++ +T+GQR+GLG+ E +VV D ++ +IV L + +++ Sbjct: 232 GLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPRLFSKGLIASQLH 291 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W+ + + + +C VK R Q +P ++ DD + V F++ + V GQ+ VFY Sbjct: 292 WVD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDEIIRVIFDEPQSAVTPGQSAVFY 347 Query: 369 TSDSNEARVLGGGIIS 384 + LGGGII+ Sbjct: 348 LGEV----CLGGGIIA 359 >gi|322805504|emb|CBZ03068.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum H04402 065] Length = 356 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 137/368 (37%), Positives = 209/368 (56%), Gaps = 15/368 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78 +V+V MSGGVDSSV A LLK GY+VIGVT+Q++ + + +++G CC+ V DARR Sbjct: 2 KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARR 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + I + YV ++++ F+ VI F Y G TP PC+ CN+ +KFS L +G Sbjct: 62 VANKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAMGI 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + R I+ + D ++DQ+Y L+ TQ QL P G KK Sbjct: 122 DYVATGHYAIIEKHND-----RYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A+E+GL + +K DS++ICF+ + +K EG+ V G ILG H G Sbjct: 177 KIREIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNILGTHKG 236 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I+ YTIGQR+GLG+A G+P++VV ++ + V++G E L + ++ N++ D Sbjct: 237 IVYYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDTNYI----PFD 292 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + + KIR SQ P + +DG V V+F + + + GQ+ VFY D + Sbjct: 293 TLKEPMEVEAKIRYSQTPSKAIITPIEDGRVRVNFHEKQRAITKGQSVVFYKDD----LL 348 Query: 378 LGGGIISG 385 +GGGII Sbjct: 349 IGGGIIEK 356 >gi|145635278|ref|ZP_01790981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae PittAA] gi|205822421|sp|Q4QP16|MNMA_HAEI8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|145267422|gb|EDK07423.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae PittAA] Length = 383 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 125/388 (32%), Positives = 207/388 (53%), Gaps = 29/388 (7%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 +L L +N +V+ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 12 PQLTQEQLARNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 67 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 68 CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 127 Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 L LGAD +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ Sbjct: 128 KAFLEYAAEDLGADYIATGHYVRRA---GDNENAK--LLRGLDANKDQSYFLYTLSHKQV 182 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 183 GQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 240 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297 ++ +I+GRH+G++ +T+GQR+GLG+ E +VV D ++ +IV Sbjct: 241 RTVDDEIIGRHDGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR 300 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356 L + +++W+ + + + +C VK R Q +P ++ DD + V F++ + Sbjct: 301 LFSKGLIASQLHWVD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQ 356 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGGII+ Sbjct: 357 SAVTPGQSAVFYLGEV----CLGGGIIA 380 >gi|282851667|ref|ZP_06261032.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus gasseri 224-1] gi|311110534|ref|ZP_07711931.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus gasseri MV-22] gi|205822450|sp|Q042R4|MNMA_LACGA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|282557635|gb|EFB63232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus gasseri 224-1] gi|311065688|gb|EFQ46028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus gasseri MV-22] Length = 375 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 128/384 (33%), Positives = 195/384 (50%), Gaps = 25/384 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + ++RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++ + G C A +D D Sbjct: 3 DNSEIRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDD---TDDSGVCTATEDYEDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++V D I + +Y ++E+ + V F + Y G TP P V CN+ +KF L L Sbjct: 60 KKVADEIGIPYYSINFEKDYWERVFEYFLNEYKKGRTPNPDVMCNKEIKFKSFLDFAMDL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY +++ D M RP D +DQ+YFL +Q QL + FPL ++ Sbjct: 120 DADYIAMGHYAATKV----DENGIVHMMRPKDGNKDQTYFLSQLSQDQLKKVIFPLANLT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A + GL A K DS ICF+ + + + A G +V +G+++G H Sbjct: 176 KPQVREIAIDAGLATAKKKDSTGICFIGERNFKKFLSEFLP--AQSGKMVTPDGKVVGEH 233 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309 G++ YTIGQR GLG+ + P FVV D + +IV L + ++ Sbjct: 234 AGLMYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYATSLDASGVS 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVF 367 + D KC K R Q V V + + D+ V+V+F++ V GQA VF Sbjct: 294 FFTGQPEHDI---DLKCTAKFRYRQPDVGVTMHYHAKDNTVHVEFDEPARAVTPGQAIVF 350 Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391 Y + LGG I + +++ Sbjct: 351 YNGE----ECLGGATIDRAYQNEK 370 >gi|323524770|ref|YP_004226923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia sp. CCGE1001] gi|323381772|gb|ADX53863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia sp. CCGE1001] Length = 381 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 128/394 (32%), Positives = 182/394 (46%), Gaps = 30/394 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 +VVV MSGGVDSSV A LLK GYDV+G+ ++ + S+ C QD D Sbjct: 2 SKQKVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADLIGIDVEAVNFASEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R R + R + + D +DQSYFL Q QL FPLG++ K Sbjct: 119 ETIATGHYARVR-----ENNGRFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A ++ L A K DS ICF+ + + D + R G + +G+++G H G Sbjct: 174 RVRKIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLP--TQPGPMKTTDGKVVGEHIG 231 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT GQR+G+G+ GEP FV D S+ + V L HR+ +W Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAGKDIASNTLYVAQGHDHPWLLSHRLTAGNTSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ---RNDDGVYVDFEKSEVGVASGQACVF 367 + + +GF C K R Q D + F+ ++ V GQ+ V Sbjct: 292 VAG----EPPAEGFACGAKTRYRQADARCTFSAAGAGGDLFQLTFDDAQWAVTPGQSAVL 347 Query: 368 YTSDSNEARVLGGGIIS-GSKRSDAVEESLLSVI 400 Y D LGGGII + A E + + Sbjct: 348 YDGDV----CLGGGIIEQAATAQPAAREPQKAAL 377 >gi|116629824|ref|YP_814996.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, PP-loop ATPase [Lactobacillus gasseri ATCC 33323] gi|116095406|gb|ABJ60558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus gasseri ATCC 33323] Length = 383 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 128/384 (33%), Positives = 195/384 (50%), Gaps = 25/384 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + ++RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++ + G C A +D D Sbjct: 11 DNSEIRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDD---TDDSGVCTATEDYEDV 67 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++V D I + +Y ++E+ + V F + Y G TP P V CN+ +KF L L Sbjct: 68 KKVADEIGIPYYSINFEKDYWERVFEYFLNEYKKGRTPNPDVMCNKEIKFKSFLDFAMDL 127 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY +++ D M RP D +DQ+YFL +Q QL + FPL ++ Sbjct: 128 DADYIAMGHYAATKV----DENGIVHMMRPKDGNKDQTYFLSQLSQDQLKKVIFPLANLT 183 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A + GL A K DS ICF+ + + + A G +V +G+++G H Sbjct: 184 KPQVREIAIDAGLATAKKKDSTGICFIGERNFKKFLSEFLP--AQSGKMVTPDGKVVGEH 241 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309 G++ YTIGQR GLG+ + P FVV D + +IV L + ++ Sbjct: 242 AGLMYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYATSLDASGVS 301 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVF 367 + D KC K R Q V V + + D+ V+V+F++ V GQA VF Sbjct: 302 FFTGQPEHDI---DLKCTAKFRYRQPDVGVTMHYHAKDNTVHVEFDEPARAVTPGQAIVF 358 Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391 Y + LGG I + +++ Sbjct: 359 YNGE----ECLGGATIDRAYQNEK 378 >gi|152997270|ref|YP_001342105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Marinomonas sp. MWYL1] gi|205816876|sp|A6W0E1|MNMA_MARMS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|150838194|gb|ABR72170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Marinomonas sp. MWYL1] Length = 390 Score = 481 bits (1238), Expect = e-133, Method: Composition-based stats. Identities = 124/384 (32%), Positives = 194/384 (50%), Gaps = 27/384 (7%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L D +V+V MSGGVDSSV A +L + GY V G+ ++ ++ ++ C A Sbjct: 22 LTAQPANHDKKVIVGMSGGVDSSVSALILMQQGYQVEGLFMKNWDEDDGTE---YCTAKD 78 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DA+ V D + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 79 DLADAQAVSDKLGIKLHTANFASEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLE 138 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 L AD +ATGHY+R G+ ++ + +D +DQSYFL+A + ++ FP Sbjct: 139 YAMALNADYIATGHYVRRGEKNGE-----PLLLKGLDGNKDQSYFLYAVGKDEIAKTLFP 193 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 +G+++K VR LA E GL +K DS ICF+ + ++ D +++ A GDI L G Sbjct: 194 VGELEKTEVRRLAEEFGLITHNKKDSTGICFIGERRFKDFLEQYLP--AQPGDIETLEGD 251 Query: 252 ILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIV---GPRESLEVHRI 303 + RH+G++ +TIGQR+GLG+ +P +VV D + +IV G ESL + Sbjct: 252 KIARHHGLMYHTIGQRQGLGIGGLAKYSDDPWYVVEKDLERNVLIVTQGGQHESLFKTHL 311 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASG 362 +W+ + C K R Q + + D V V F + + V G Sbjct: 312 IADNFDWVA----REKPTFPLTCKAKCRYRQSDQECTINELADGRVEVSFVEPQRAVTPG 367 Query: 363 QACVFYTSDSNEARVLGGGIISGS 386 Q+ VFY D LGGGII+ + Sbjct: 368 QSVVFYVDDV----CLGGGIINVA 387 >gi|184155064|ref|YP_001843404.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus fermentum IFO 3956] gi|229486413|sp|B2GB92|MNMA_LACF3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|183226408|dbj|BAG26924.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Lactobacillus fermentum IFO 3956] Length = 377 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 131/390 (33%), Positives = 198/390 (50%), Gaps = 25/390 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSHTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F + G TP P V CN+ +KF + QL Sbjct: 60 AKVATQIGIPYYSVNFEKEYWDRVFTYFIDEFKKGRTPNPDVICNKEIKFKAFIEYANQL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + D + R D +DQ+YFL QL + FPL Sbjct: 120 GADYVATGHYADLKR----DEAGNMHLMRAKDQTKDQTYFLSQLDHAQLDKVLFPLAGYT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K+ VR LA++ GL +ADK DS ICF+ + G + + + + A +G++ ++G+++G Sbjct: 176 KKEVRQLAKDAGLVVADKKDSVGICFIGEDGHFREFLSQYLP--AQQGEMQTVDGKVVGT 233 Query: 256 HNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 H G++ YTIGQR+GLG+ +P FV+ D + + VG E L + +I Sbjct: 234 HAGLMYYTIGQRKGLGLGGTKENNDPWFVIGKDITKNVLYVGQGYENEHLYATHMEASDI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366 +W+ D + + F C K R Q V V+ +DDG V V + + GQA V Sbjct: 294 HWVDDVVSRYGM--EFHCTAKFRYRQKDEGVTVKLSDDGQMVTVTSDDPARAITPGQAVV 351 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396 FY D LG II + + + + Sbjct: 352 FYDGD----ECLGSAIIDRAYNQERQLQYV 377 >gi|325479285|gb|EGC82381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaerococcus prevotii ACS-065-V-Col13] Length = 367 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 135/381 (35%), Positives = 202/381 (53%), Gaps = 24/381 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K KD +VVV +SGGVDSSV A LLK +GYDV+G+ ++ ++ + G C A D D Sbjct: 2 KEKKDTKVVVGISGGVDSSVAALLLKEEGYDVVGIFMKNWDD---TDENGVCTAEVDYED 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A V + I + +Y ++E+ + + V F Y G TP P + CN+ +KF L + Sbjct: 59 AVAVSNQIGIPYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAKS 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY R+ D +M R +D +DQ+YFL +Q+Q+ D+ FP+G+ Sbjct: 119 LGADYVATGHYARA-----DRSNGETVMLRGVDNNKDQTYFLSQLSQEQIKDVLFPVGEF 173 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K+ VR++A + L ADK DS ICF+ + + + + A G+IV G ILG+ Sbjct: 174 EKKEVREIAHKYNLATADKKDSTGICFIGERDFNEFLSNYLP--AQPGNIVDTEGHILGK 231 Query: 256 HNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 H+G++ +TIGQRRGLG+ GE FV D ++ +IV L +++Y E + + Sbjct: 232 HDGLMFHTIGQRRGLGIGGEGEAWFVCGKDLKNNELIVCQGRNNPLLFSNKLYASEFSTI 291 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 D + F C K R Q + V+ +G V V ++K+ V GQA VFY Sbjct: 292 SD----KKCPEEFDCTAKFRYRQKDINAHVKVLGEGKVEVTYDKT-KAVTPGQAAVFYQG 346 Query: 371 DSNEARVLGGGIISGSKRSDA 391 + LG II D Sbjct: 347 EV----CLGSAIIDEVYNDDK 363 >gi|76810425|ref|YP_334767.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia pseudomallei 1710b] gi|126451955|ref|YP_001067626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 1106a] gi|242317503|ref|ZP_04816519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 1106b] gi|254191526|ref|ZP_04898029.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei Pasteur 52237] gi|254194966|ref|ZP_04901396.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei S13] gi|254261623|ref|ZP_04952677.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 1710a] gi|254299216|ref|ZP_04966666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 406e] gi|123598034|sp|Q3JNT6|MNMA_BURP1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205811476|sp|A3NZ55|MNMA_BURP0 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|76579878|gb|ABA49353.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 1710b] gi|126225597|gb|ABN89137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 1106a] gi|157808903|gb|EDO86073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 406e] gi|157939197|gb|EDO94867.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei Pasteur 52237] gi|169651715|gb|EDS84408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei S13] gi|242140742|gb|EES27144.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 1106b] gi|254220312|gb|EET09696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 1710a] Length = 383 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 129/395 (32%), Positives = 183/395 (46%), Gaps = 32/395 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V Sbjct: 3 KRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 60 ADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQ 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K Sbjct: 120 TIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTR 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A ++GL A K DS ICF+ + + D + R G + +G+ +G+H G+ Sbjct: 175 VREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGKHIGL 232 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 YT GQR+G+G+ GEP FV D S+ + V L + ++W+ Sbjct: 233 AFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWV 292 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVGVASGQACVF 367 + DG +C K R Q P Q D+ + F++ + V GQ+ V Sbjct: 293 AG----EPPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWAVTPGQSAVL 348 Query: 368 YTSDSNEARVLGGGIIS--GSKRSDAVEESLLSVI 400 Y D LGGGII + R+ + Sbjct: 349 YDGDV----CLGGGIIESAATGRAGTAPAGRAPAL 379 >gi|326390968|ref|ZP_08212518.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter ethanolicus JW 200] gi|325993010|gb|EGD51452.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter ethanolicus JW 200] Length = 376 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 141/374 (37%), Positives = 212/374 (56%), Gaps = 14/374 (3%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYD 75 K+ RVVV MSGGVDSSV A LLK G+DVIGVT+Q++ + +G CC+ V D Sbjct: 14 KKNNRVVVGMSGGVDSSVSAYLLKEQGFDVIGVTMQIWQDKDEEAVRVEGGCCSLSAVND 73 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 ARRV + I + +YV ++++ F+ VI F Y G TP PC+ CN+ +KF +LL Sbjct: 74 ARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLKGRTPNPCIACNKYIKFEELLKRAWM 133 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 + A +ATGHY D+ +RR ++ + +D +DQ+Y L+ TQ QL + FPLG Sbjct: 134 IDAYYVATGHYAIKEY---DEERRRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKY 190 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 KK+ VR+LA+ +GL +A K DSQ+ICFV Y ++ G+ G+ LG Sbjct: 191 KKDEVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGY 250 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H GII+YTIGQR+GLG+++G+PL+VV +D ++ V++G + + + N++ Sbjct: 251 HKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVFGDELISYNNNFISI-- 308 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374 D + + KIR + ++ +DG V+V F+ + + GQ+ VFY D Sbjct: 309 --DKLEGEMRVKAKIRYTAKEQDAVIRPLEDGRVFVKFDNPQRAITPGQSVVFYDGDI-- 364 Query: 375 ARVLGGGIISGSKR 388 V+GGG I R Sbjct: 365 --VVGGGTIERKVR 376 >gi|330954571|gb|EGH54831.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae Cit 7] Length = 357 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 121/374 (32%), Positives = 193/374 (51%), Gaps = 26/374 (6%) Query: 29 GGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHY 88 GGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VCD I + + Sbjct: 1 GGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVCDKIGIKLH 57 Query: 89 VFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIR 148 ++ + + V F Y AG TP P + CNR +KF L LGAD++ATGHY+R Sbjct: 58 TANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADLIATGHYVR 117 Query: 149 SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMG 208 R D R + + +D +DQSYFL A +Q+ FP+G+++K VR +A + G Sbjct: 118 RR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEVRAIAEKHG 172 Query: 209 LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRR 268 L A K DS ICF+ + ++ D +++ A G+I G+++GRH+G++ +TIGQR+ Sbjct: 173 LATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLMYHTIGQRQ 230 Query: 269 GLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAV 320 GLG+ +P +V+ D +++ +IVG L + EI W+ Sbjct: 231 GLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWVNPIDLSSP- 289 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 K K+R Q P +++ DG F+ + V GQ+ VFY + LGG Sbjct: 290 ---RKLTAKVRYRQGDQPCTLEKTADGYRATFDDPQRAVTPGQSVVFYDGEI----CLGG 342 Query: 381 GIISGSKRSDAVEE 394 G+I ++ + ++ Sbjct: 343 GVIEIAEPWTSKDK 356 >gi|290475827|ref|YP_003468719.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xenorhabdus bovienii SS-2004] gi|289175152|emb|CBJ81955.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xenorhabdus bovienii SS-2004] Length = 367 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 127/378 (33%), Positives = 198/378 (52%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYKVAGLFMKNWEEDDDEE---YCSAAADLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGIELHTINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R R D + R +D +DQSYFL+ + QQ+ FP+G++ Sbjct: 120 LGADYIATGHYVRRR-----DVDGISQLLRGLDGNKDQSYFLYTLSHQQIAKSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR LA E+GL A K DS ICF+ + K+ D + R A G I+ ++GQ +G+ Sbjct: 175 EKPEVRRLAEEIGLVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGSIITVDGQTIGQ 232 Query: 256 HNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ E +VV D ++ +IV L + ++ Sbjct: 233 HTGLMYHTLGQRKGLGIGGTKDGSEEAWYVVDKDVENNTLIVAQGHDHPRLMSVGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACV 366 ++W+ A+ +C VK R Q +P V ++D + V F+ V GQ+ V Sbjct: 293 LDWVD----RQALKTEIRCVVKTRYRQHDIPCTVIPLSEDKIEVRFDSPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGG+I Sbjct: 349 FYQGEI----CLGGGVIE 362 >gi|167847243|ref|ZP_02472751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei B7210] Length = 373 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 128/379 (33%), Positives = 180/379 (47%), Gaps = 30/379 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V Sbjct: 3 KRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 60 ADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQ 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K Sbjct: 120 TIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTR 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A ++GL A K DS ICF+ + + D + R G + +G+ +G+H G+ Sbjct: 175 VREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGKHIGL 232 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 YT GQR+G+G+ GEP FV D S+ + V L + ++W+ Sbjct: 233 AFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWV 292 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVGVASGQACVF 367 + DG +C K R Q P Q D+ + F++ + V GQ+ V Sbjct: 293 AG----EPPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWAVTPGQSAVL 348 Query: 368 YTSDSNEARVLGGGIISGS 386 Y D LGGGII + Sbjct: 349 YDGDV----CLGGGIIESA 363 >gi|83590486|ref|YP_430495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Moorella thermoacetica ATCC 39073] gi|123524262|sp|Q2RHY7|MNMA_MOOTA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|83573400|gb|ABC19952.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Moorella thermoacetica ATCC 39073] Length = 357 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 147/364 (40%), Positives = 206/364 (56%), Gaps = 13/364 (3%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAGQDVYDARRVCDT 82 +VAMSGGVDSS AALLK GY+VIGVTL L+ + CC+ + V DARRV + Sbjct: 1 MVAMSGGVDSSTAAALLKEAGYEVIGVTLALWPEDTPPPPGETGCCSLKAVDDARRVANI 60 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 +++ +YV ++ + F VI F +SY GETP PC+ CNR +KF LL+ R LG D +A Sbjct: 61 LDIPYYVLNFRDLFEREVIDYFIASYLEGETPNPCIACNRRIKFGALLAKARALGIDYIA 120 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R D K R ++ R D +DQSY L+ TQ+QL PLGD K VR+ Sbjct: 121 TGHYARRWY---DKEKGRYLLARGRDAGKDQSYALYTFTQEQLAHTLLPLGDYTKVEVRE 177 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A GL +A K++SQ+ICFV +G Y D ++ G I+ G++LG+H G+ Y Sbjct: 178 IAARYGLPVARKAESQEICFVTEGDYRDYIQSRAREKIKPGPILDTRGRVLGQHRGLPFY 237 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A+G+P FVV LD + VIVG +E LE +Y R+ N++ + Sbjct: 238 TIGQRKGLGLALGKPCFVVALDPERNAVIVGDKEDLERRVLYARDNNYI----LWGELPG 293 Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + +IR G ++F++ + + GQA V+Y D V+GGG Sbjct: 294 KARVTARIRYRAPEAAATWHPLAGGRARLEFDEPQRAITPGQAVVYYQGD----LVVGGG 349 Query: 382 IISG 385 I Sbjct: 350 TIES 353 >gi|53720497|ref|YP_109483.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia pseudomallei K96243] gi|126440060|ref|YP_001060365.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia pseudomallei 668] gi|167817350|ref|ZP_02449030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 91] gi|167904220|ref|ZP_02491425.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei NCTC 13177] gi|217421190|ref|ZP_03452695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 576] gi|81379110|sp|Q63QY5|MNMA_BURPS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205813851|sp|A3NDE4|MNMA_BURP6 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|52210911|emb|CAH36899.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei K96243] gi|126219553|gb|ABN83059.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 668] gi|217396602|gb|EEC36619.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 576] Length = 383 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 129/395 (32%), Positives = 182/395 (46%), Gaps = 32/395 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V Sbjct: 3 KRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 60 ADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQ 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K Sbjct: 120 TIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTR 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A ++GL A K DS ICF+ + + D + R G + +G+ +G H G+ Sbjct: 175 VREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGL 232 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 YT GQR+G+G+ GEP FV D S+ + V L + ++W+ Sbjct: 233 AFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWV 292 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVGVASGQACVF 367 + DG +C K R Q P Q D+ + F++ + V GQ+ V Sbjct: 293 AG----EPPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWAVTPGQSAVL 348 Query: 368 YTSDSNEARVLGGGIIS--GSKRSDAVEESLLSVI 400 Y D LGGGII + R+ + Sbjct: 349 YDGDV----CLGGGIIESAATGRAGTAPAGRAPAL 379 >gi|299065725|emb|CBJ36899.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia solanacearum CMR15] Length = 370 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 131/385 (34%), Positives = 191/385 (49%), Gaps = 28/385 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ + S+ C QD D Sbjct: 2 SGKRVVVGMSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I V ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADLIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R G R + + D +DQSYFL Q QL FPL +M K Sbjct: 119 DTIATGHYARVREVDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLSEMPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A E+GL A K DS ICF+ + + D + R G I +G+ +G+H G Sbjct: 174 RVREIAAEIGLPNARKKDSTGICFIGERPFRDFLNRYLP--TQPGPIRTPDGKTIGQHIG 231 Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT+GQR+G+G+ G+ +V D ++ + V L H ++ +++W Sbjct: 232 LAFYTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVAQGHDHPWLLAHTVHADDLSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYT 369 + +G + K R Q P V + D + + FE+++ V GQ+ V Y Sbjct: 292 VAGH----PPAEGTQLAAKTRYRQADAPCAVTSASGDALTLTFEQAQWAVTPGQSAVLYD 347 Query: 370 SDSNEARVLGGGIISGSKRSDAVEE 394 D LGGGII+ ++ + VE+ Sbjct: 348 GDI----CLGGGIIASTE-AAPVEQ 367 >gi|323172490|gb|EFZ58127.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli LT-68] gi|323947563|gb|EGB43567.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli H120] Length = 357 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 120/368 (32%), Positives = 193/368 (52%), Gaps = 28/368 (7%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD + + Sbjct: 1 MSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCDKLGIE 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLATGH 145 + ++ + + V F + Y AG TP P + CN+ +KF L LGAD +ATGH Sbjct: 58 LHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGH 117 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K VR +A Sbjct: 118 YVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAE 172 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G++ +T+G Sbjct: 173 DLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLMYHTLG 230 Query: 266 QRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFE 317 QR+GLG+ EP +VV D ++ ++V L + ++++W+ Sbjct: 231 QRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVD----R 286 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY + Sbjct: 287 EPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNGEV---- 342 Query: 377 VLGGGIIS 384 LGGGII Sbjct: 343 CLGGGIIE 350 >gi|237794471|ref|YP_002862023.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum Ba4 str. 657] gi|229260617|gb|ACQ51650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum Ba4 str. 657] Length = 356 Score = 480 bits (1237), Expect = e-133, Method: Composition-based stats. Identities = 138/368 (37%), Positives = 210/368 (57%), Gaps = 15/368 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78 +V+V MSGGVDSSV A LLK GY+VIGVT+Q++ + + +++G CC+ V DARR Sbjct: 2 KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARR 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + I + YV ++++ F+ VI F Y G TP PC+ CN+ +KFS L +G Sbjct: 62 VANKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAMGI 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + + R I+ + D ++DQ+Y L+ TQ QL P G KK Sbjct: 122 DYVATGHYAIIKKHND-----RYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A+E+GL + +K DS++ICF+ + +K EG+ V G ILG H G Sbjct: 177 KIREIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNILGTHKG 236 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I+ YTIGQR+GLG+A G+P++VV ++ + V++G E L + ++ N++ D Sbjct: 237 IVYYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDTNYI----PFD 292 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + + KIR SQ P + DDG V V+F + + + GQ+ VFY D + Sbjct: 293 TLKEPMEVEAKIRYSQIPSKAIITPIDDGRVRVNFHEKQRAITKGQSVVFYKDD----LL 348 Query: 378 LGGGIISG 385 +GGGII Sbjct: 349 IGGGIIEK 356 >gi|331662546|ref|ZP_08363469.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli TA143] gi|331060968|gb|EGI32932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Escherichia coli TA143] Length = 357 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 121/368 (32%), Positives = 193/368 (52%), Gaps = 28/368 (7%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD + + Sbjct: 1 MSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCDKLGIE 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLATGH 145 + ++ + + V F + Y AG TP P + CN+ +KF L LGAD +ATGH Sbjct: 58 LHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGH 117 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K VR +A Sbjct: 118 YVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAE 172 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H G++ +T+G Sbjct: 173 DLGLVTAKKKDSTGICFIGERKFREFLGRYLP--AQPGKIITVDGDEIGEHQGLMYHTLG 230 Query: 266 QRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFE 317 QR+GLG+ EP +VV D ++ +IV L + ++++W+ Sbjct: 231 QRKGLGIGGTKDGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVD----R 286 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY + Sbjct: 287 EPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNGEV---- 342 Query: 377 VLGGGIIS 384 LGGGII Sbjct: 343 CLGGGIIE 350 >gi|145633601|ref|ZP_01789329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae 3655] gi|229847290|ref|ZP_04467393.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae 7P49H1] gi|144985807|gb|EDJ92421.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae 3655] gi|229809833|gb|EEP45556.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae 7P49H1] Length = 383 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 125/388 (32%), Positives = 207/388 (53%), Gaps = 29/388 (7%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 +L L +N +V+ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 12 PQLTQEQLARNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 67 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 68 CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 127 Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 L L AD +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ Sbjct: 128 KAFLEYAAEDLCADYIATGHYVRR---TGDNENAK--LLRGLDANKDQSYFLYTLSHKQV 182 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 183 GQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 240 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297 ++G+I+GRH+G++ +T+GQR+GLG+ E +VV D ++ +IV Sbjct: 241 RTVDGEIIGRHDGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR 300 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356 L + +++W+ + + + +C VK R Q +P ++ DD + V F++ + Sbjct: 301 LFSKGLIASQLHWVD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQ 356 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGGII+ Sbjct: 357 SAVTPGQSAVFYLDEV----CLGGGIIA 380 >gi|227514810|ref|ZP_03944859.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus fermentum ATCC 14931] gi|260663608|ref|ZP_05864497.1| tRNA methyl transferase [Lactobacillus fermentum 28-3-CHN] gi|227086800|gb|EEI22112.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus fermentum ATCC 14931] gi|260551834|gb|EEX24949.1| tRNA methyl transferase [Lactobacillus fermentum 28-3-CHN] Length = 377 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 131/390 (33%), Positives = 197/390 (50%), Gaps = 25/390 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSHTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F + G TP P V CN+ +KF + QL Sbjct: 60 AKVATQIGIPYYSVNFEKEYWDRVFTYFIDEFKKGRTPNPDVICNKEIKFKAFIEYANQL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + D + R D +DQ+YFL QL + FPL Sbjct: 120 GADYVATGHYADLKR----DEAGNMHLMRAKDQTKDQTYFLSQLDHAQLDKVLFPLAGYT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K+ VR LA++ GL +ADK DS ICF+ + G + + + + A +G++ ++G+++G Sbjct: 176 KKEVRQLAKDAGLVVADKKDSVGICFIGEDGHFREFLSQYLP--AQQGEMQTVDGKVVGT 233 Query: 256 HNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 H G++ YTIGQR+GLG+ +P FV+ D + + VG E L + +I Sbjct: 234 HAGLMYYTIGQRKGLGLGGTKENNDPWFVIGKDITKNVLYVGQGYENEHLYATHMEASDI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366 +W+ D + F C K R Q V V+ +DDG V V + + GQA V Sbjct: 294 HWVDDVVSRYGT--EFHCTAKFRYRQKDEGVTVKLSDDGQMVTVTSDDPARAITPGQAVV 351 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396 FY D LG II + + + + Sbjct: 352 FYDGD----ECLGSAIIDRAYNQERQLQYV 377 >gi|229845165|ref|ZP_04465299.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae 6P18H1] gi|229811876|gb|EEP47571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae 6P18H1] Length = 383 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 125/388 (32%), Positives = 207/388 (53%), Gaps = 29/388 (7%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 +L L +N +V+ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 12 PQLTQEQLARNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 67 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 68 CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 127 Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 L L AD +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ Sbjct: 128 KAFLEYAAEDLCADYIATGHYVRR---TGDNENAK--LLRGLDANKDQSYFLYTLSHKQV 182 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 183 GQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 240 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297 ++G+I+GRH+G++ +T+GQR+GLG+ E +VV D ++ +IV Sbjct: 241 RTVDGEIIGRHDGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR 300 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356 L + +++W+ + + + +C VK R Q +P ++ DD + V F++ + Sbjct: 301 LFSKGLIASQLHWVD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQ 356 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGGII+ Sbjct: 357 SAVTPGQSAVFYLDEV----CLGGGIIA 380 >gi|242239492|ref|YP_002987673.1| tRNA-specific 2-thiouridylase MnmA [Dickeya dadantii Ech703] gi|242131549|gb|ACS85851.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dickeya dadantii Ech703] Length = 370 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 120/379 (31%), Positives = 195/379 (51%), Gaps = 29/379 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V MSGGVDSSV A LL++ GY V G+ ++ + ++ C A D+ DA Sbjct: 3 DNSQKKVIVGMSGGVDSSVSAYLLQQQGYQVEGLFMKNWEEDDDTE---YCSAAADLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQ 135 + VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGIELHTVNFAAEYWDNVFEHFLAEYRAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +ATGHY+R + D + + R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 120 LCADYIATGHYVRRQ-----DIAGKSRLLRGLDNNKDQSYFLYTLSHEQVAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254 +K VR +A E+ L A K DS ICF+ + K+ D + R A G I+ + +G+ +G Sbjct: 175 EKPQVRRIAEELDLATAKKKDSTGICFIGERKFRDFLARYLP--AQPGAIISVDDGKTMG 232 Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 H G++ +T+GQR+GLG+ +P +VV D ++ + V L + + Sbjct: 233 EHQGLMYHTLGQRKGLGIGGVRDGGDDPWYVVDKDVANNILYVAQGHEHPRLMSQGLIAQ 292 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQAC 365 +++W+ + + C VK R Q +P + ++ V V FE V GQ+ Sbjct: 293 QLHWVD----REPLSQPQTCTVKTRYRQADIPCTLTPLGEERVEVRFESPVAAVTPGQSA 348 Query: 366 VFYTSDSNEARVLGGGIIS 384 VFY + LGGGII Sbjct: 349 VFYQGEV----CLGGGIIE 363 >gi|323165641|gb|EFZ51428.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Shigella sonnei 53G] Length = 357 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 120/368 (32%), Positives = 193/368 (52%), Gaps = 28/368 (7%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA+ VCD + + Sbjct: 1 MSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEE---YCTAAADLADAQAVCDKLGIE 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLATGH 145 + ++ + + V F + Y AG TP P + CN+ +KF L LGAD +ATGH Sbjct: 58 LHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGH 117 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K VR +A Sbjct: 118 YVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAE 172 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 ++GL A K DS ICF+ + K+ + + R G G I+ ++G +G H G++ +T+G Sbjct: 173 DLGLVTAKKKDSTGICFIGERKFREFLGRYLPG--QPGKIITVDGDEIGEHQGLMYHTLG 230 Query: 266 QRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFE 317 QR+GLG+ EP +VV D ++ ++V L + ++++W+ Sbjct: 231 QRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVD----R 286 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + +C VK R Q +P V+ +DD + V F++ V GQ+ VFY + Sbjct: 287 EPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNGEV---- 342 Query: 377 VLGGGIIS 384 LGGGII Sbjct: 343 CLGGGIIE 350 >gi|325844820|ref|ZP_08168272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Turicibacter sp. HGF1] gi|325489007|gb|EGC91395.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Turicibacter sp. HGF1] Length = 377 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 123/391 (31%), Positives = 192/391 (49%), Gaps = 28/391 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCA 69 K +V+V MSGGVDSSV A LLK GY+V GV ++ ++S + G+ C Sbjct: 3 ANKGKKVIVGMSGGVDSSVAAYLLKEQGYEVEGVFMRNWDSAANADVLGNPTLNDEVCPQ 62 Query: 70 GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 D DA+ V D + + + D+ + + + V + F Y AG TP P + CN+ VKF Sbjct: 63 EVDYNDAKAVADQLGIKLHRVDFVQEYWDRVFMYFLDEYRAGRTPNPDIMCNKEVKFKAF 122 Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 L LG D +A GHY R + M R +D +DQ+YFL TQ QL Sbjct: 123 LDYAMNLGCDYIAMGHYARVSH------EGEVQMLRGLDNNKDQTYFLSQLTQAQLSKTL 176 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 FP+G+++K VR +A ++ L A K DS +CF+ + + ++ A G + L Sbjct: 177 FPVGELQKSEVRAIAEKLDLATAKKKDSTGVCFIGERNFTQFLQNYLP--AQPGQMRTLE 234 Query: 250 GQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 G+++G H G++ YTIGQR+GLG+ G+ FV+ + + ++VG E + + Sbjct: 235 GEVVGEHIGLMYYTIGQRKGLGIGGKGDAWFVIGKNLKDNVLLVGQGFDHEYVYADEALV 294 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQA 364 +NW+ + V ++C K R Q +PV + +D+ + V + V GQA Sbjct: 295 SNVNWI----PSERFVGTYRCTAKFRYRQPDIPVELTWIDDETLNVKMLEPVRAVTPGQA 350 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEES 395 VFY + LGGG I + + + Sbjct: 351 AVFYLDEV----CLGGGRIEVAYKDKEARQY 377 >gi|328957187|ref|YP_004374573.1| tRNA-specific 2-thiouridylase MnmA [Carnobacterium sp. 17-4] gi|328673511|gb|AEB29557.1| tRNA-specific 2-thiouridylase MnmA [Carnobacterium sp. 17-4] Length = 362 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 125/379 (32%), Positives = 190/379 (50%), Gaps = 26/379 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A +LK+ GYDV+G+ ++ ++ + G C A +D D V + I + Sbjct: 1 MSGGVDSSVTALVLKQQGYDVVGIFMKNWDD---TDEFGVCTATEDYNDVALVANQIGIP 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 +Y ++E+++ + V F Y G TP P V CN+ +KF L +LGAD +ATGHY Sbjct: 58 YYSINFEKQYWDKVFTYFLEEYKKGRTPNPDVMCNKEIKFKAFLDYAIELGADYVATGHY 117 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 + V D M R +D +DQ+YFL +Q+QL FPLG M+K VR +A E Sbjct: 118 AQ----VERDENGVTHMLRGLDNNKDQTYFLNQLSQEQLAKTLFPLGGMQKSEVRKIAEE 173 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI-- 264 GL A K DS +CF+ + + + A G ++ ++G++ G+H+G++ YTI Sbjct: 174 AGLATAKKKDSTGVCFIGERDFKKFLMTYLP--AQPGSMMTVDGEVKGQHDGLMYYTIGQ 231 Query: 265 --GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDA 319 G G G +P FVV D ++ + VG E L + ++++ + + Sbjct: 232 RQGLGIGGGGKSSDPWFVVGKDLETNTLYVGQGFNHEWLLATHLEASDLHFTTN----EE 287 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 FKC K R Q V VQ N+DG V+F++ + GQA VFY Sbjct: 288 KPRTFKCTAKFRYRQADTGVTVQLNEDGTAATVEFDEPVRAITPGQAVVFYDG----LEC 343 Query: 378 LGGGIISGSKRSDAVEESL 396 LGGG I + + + Sbjct: 344 LGGGTIDAAYNEKKELQYV 362 >gi|148379169|ref|YP_001253710.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A str. ATCC 3502] gi|153931319|ref|YP_001383546.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum A str. ATCC 19397] gi|153936775|ref|YP_001387095.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum A str. Hall] gi|205810260|sp|A7FT69|MNMA1_CLOB1 RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 gi|205810283|sp|A5I123|MNMA1_CLOBH RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 gi|148288653|emb|CAL82734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A str. ATCC 3502] gi|152927363|gb|ABS32863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A str. ATCC 19397] gi|152932689|gb|ABS38188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A str. Hall] Length = 356 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 137/368 (37%), Positives = 210/368 (57%), Gaps = 15/368 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78 +V+V MSGGVDSSV A LLK GY+VIGVT+Q++ + + +++G CC+ V DARR Sbjct: 2 KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARR 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + I + YV ++++ F+ VI F Y G TP PC+ CN+ +KFS L +G Sbjct: 62 VANKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAIGI 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + R I+ + D ++DQ+Y L+ TQ QL P G KK Sbjct: 122 DYVATGHYAIIEKHND-----RYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A+E+GL + +K DS++ICF+ + +K EG+ V G ILG H G Sbjct: 177 KIREIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNILGTHKG 236 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I+ YTIGQR+GLG+A G+P++VV ++ + V++G E L ++ ++ N++ D Sbjct: 237 IVYYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTKLIAKDTNYI----PFD 292 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + + KIR SQ P + +DG V V+F + + + GQ+ VFY D + Sbjct: 293 TLKEPMEVEAKIRYSQTPSKAIITPIEDGRVRVNFHEKQRAITKGQSVVFYKDD----LL 348 Query: 378 LGGGIISG 385 +GGGII Sbjct: 349 IGGGIIEK 356 >gi|308513324|ref|NP_953615.2| tRNA-specific 2-thiouridylase MnmA [Geobacter sulfurreducens PCA] gi|81701559|sp|Q74A22|MNMA_GEOSL RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|41152729|gb|AAR35942.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacter sulfurreducens PCA] gi|298506604|gb|ADI85327.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34)-thioltransferase [Geobacter sulfurreducens KN400] Length = 365 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 165/373 (44%), Positives = 213/373 (57%), Gaps = 18/373 (4%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN----SRKASKRKGSCCAGQDV 73 R+V+AMSGGVDSSV AALLK +G++VIG+++Q+++ + ++ +CC+ D+ Sbjct: 4 KHRQRIVIAMSGGVDSSVAAALLKEEGHEVIGISMQVWDYANFAAPEGEKFDTCCSLDDI 63 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DARRV + I + YV ++EE FR VI F Y G TP PCV CN+ VKF LL Sbjct: 64 HDARRVAEQIGIPFYVVNFEEEFRRLVIDDFVDEYFRGRTPNPCVRCNQRVKFELLLHKA 123 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 R+LGAD LATGHY R G+DG + R +D +DQSYFLF TQ QL FPLG Sbjct: 124 RELGADFLATGHYARR--VRGEDG--LYHLLRGLDPAKDQSYFLFTLTQDQLARTLFPLG 179 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +M KE VR LA E GL +A+K +SQ+ICFV Y ++ + G+IV G +L Sbjct: 180 EMTKEQVRRLAAERGLRVAEKGESQEICFVPDDDYVRFLEEERGTGLMAGEIVDRKGNVL 239 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 GRH G YT+GQRRGLG+A PL+VV +D +VIVGP E L + E+ W+ Sbjct: 240 GRHGGTYRYTVGQRRGLGIAHPTPLYVVGVDAERRQVIVGPAEELLATGLTATEVTWVV- 298 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 + KIR PVP V DG V F + E V GQA VFY D Sbjct: 299 ----PPQGQTVEASCKIRYRHQPVPCTVAVRADGSAEVRFRQPEKSVTPGQAVVFYRDD- 353 Query: 373 NEARVLGGGIISG 385 VLGGG I G Sbjct: 354 ---EVLGGGWIEG 363 >gi|226322606|ref|ZP_03798124.1| hypothetical protein COPCOM_00378 [Coprococcus comes ATCC 27758] gi|225208943|gb|EEG91297.1| hypothetical protein COPCOM_00378 [Coprococcus comes ATCC 27758] Length = 359 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 144/367 (39%), Positives = 210/367 (57%), Gaps = 15/367 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDAR 77 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ ++ + G CC V DAR Sbjct: 3 KKKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEESKIQEENGGCCGLSAVDDAR 62 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 +V I + +YV ++++ F+ VI F Y G TP PC+ CNR VK+ LL+ + ++G Sbjct: 63 KVAAQIGIPYYVMNFKKDFQEKVIDYFVDEYLHGRTPNPCIACNRYVKWESLLTRSMEIG 122 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY R R + +DQ+Y L+ TQ QL P+G+ +K Sbjct: 123 ADYIATGHYARVEQLP----NGRYAIRHSATWSKDQTYALYNLTQDQLRRTLMPVGEYEK 178 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + +R++A+E+GL IA+K DSQDICFV Y ++ + EG+ V +G+ILGRH Sbjct: 179 DQIREIAKEIGLQIANKPDSQDICFVSDDDYASFIEEESDQKIPEGNFVTPDGKILGRHK 238 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GII+YTIGQR+GLG+++G P FV+ + +++ V++G E L R+ ++N++ E Sbjct: 239 GIIHYTIGQRKGLGLSLGYPAFVLEIRPDTNEVVIGTNEDLMTTRVRANKLNFMTVEDLE 298 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + F KIR + V++ +D + FE + V GQA V Y D Sbjct: 299 ----GEMRVFAKIRYNHKGDWCTVRKTGEDEIECIFETPQRAVTPGQALVLYDGD----Y 350 Query: 377 VLGGGII 383 VLGGG I Sbjct: 351 VLGGGTI 357 >gi|170691401|ref|ZP_02882566.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia graminis C4D1M] gi|170143606|gb|EDT11769.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia graminis C4D1M] Length = 381 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 128/394 (32%), Positives = 184/394 (46%), Gaps = 30/394 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 +VVV MSGGVDSSV A LLK GYDV+G+ ++ + S+ C QD D Sbjct: 2 SKQKVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R R + R + + D +DQSYFL Q QL FPLG++ K Sbjct: 119 ETIATGHYARVR-----ENNGRFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A ++ L A K DS ICF+ + + D + R G + +G+++G H G Sbjct: 174 KVREIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLP--TQPGPMKTTDGKVVGEHIG 231 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT GQR+G+G+ GEP FV D S+ + V L H + +W Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAGKDIPSNTLYVAQGHDHPWLLSHTLSAGNTSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG---VYVDFEKSEVGVASGQACVF 367 + + +GF C K R Q R + + F+ ++ V GQ+ V Sbjct: 292 VAG----EPPAEGFACGAKTRYRQADARCTFSRANQREGLFELTFDDAQWAVTPGQSAVL 347 Query: 368 YTSDSNEARVLGGGIIS-GSKRSDAVEESLLSVI 400 Y D LGGGII + AV E + + Sbjct: 348 YDGDV----CLGGGIIEHAATGQPAVREPQKAAL 377 >gi|325661222|ref|ZP_08149849.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium 4_1_37FAA] gi|325472729|gb|EGC75940.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium 4_1_37FAA] Length = 357 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 137/367 (37%), Positives = 207/367 (56%), Gaps = 15/367 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDAR 77 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + G CC V DAR Sbjct: 2 KKKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDRAVEEENGGCCGLSAVDDAR 61 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV + + +YV ++++ F+ VI F Y G TP PC+ CNR VK+ LL + +G Sbjct: 62 RVAAALEIPYYVMNFKKEFKEKVIDYFVQEYLHGRTPNPCIACNRYVKWESLLKRSMDIG 121 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY R R + L +DQ+Y L+ TQ+QL P+G+ K Sbjct: 122 ADYIATGHYARVVQL----ENGRYTLKCSATLAKDQTYALYNLTQEQLKRTLMPVGEYTK 177 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + VR++A ++ L IA+K DSQDICFV G Y ++ A EG+ V L+G++LGRH Sbjct: 178 DQVREIAEKINLRIANKPDSQDICFVPDGDYASFIEEEAAVKIPEGNFVDLDGRVLGRHK 237 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI +YT+GQR+GLG+++G P FV+ + ++ +++G E + + ++N++ Sbjct: 238 GITHYTVGQRKGLGLSLGHPAFVLEIRPETNEIVIGSNEDSLSYTLKANQLNFMSI---- 293 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + + + KIR + ++++ D V FE+ + + GQA VFY + Sbjct: 294 EDLTGEMRVWTKIRYNHKGAWGTIRKSGKDEVTCTFEEPQRAITPGQAVVFYDGE----Y 349 Query: 377 VLGGGII 383 V+GGG I Sbjct: 350 VVGGGTI 356 >gi|254514300|ref|ZP_05126361.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma proteobacterium NOR5-3] gi|219676543|gb|EED32908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma proteobacterium NOR5-3] Length = 368 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 119/383 (31%), Positives = 192/383 (50%), Gaps = 26/383 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +V+V MSGGVDSSV A +L GY V G+ ++ ++ ++ C A D DA+ V Sbjct: 4 PQKVIVGMSGGVDSSVAALMLLEQGYHVEGLFMKNWDEDDGTE---YCTAKADFADAQAV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + ++ + ++ + + V F + Y +G TP P + CNR +KF L +LGAD Sbjct: 61 ADKLQITLHSANFAAEYWDNVFEHFLAEYQSGRTPNPDILCNREIKFRAFLDYALELGAD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + G R + + +D +DQSYFL A +L FPLG++ K Sbjct: 121 SIATGHYARRGVMQG-----RPALLKGLDANKDQSYFLHAVGHAELAKTLFPLGEIAKPE 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A L DK DS ICF+ + ++ D ++R A G I L G +G H+G+ Sbjct: 176 VRARAAAADLTTHDKKDSTGICFIGERRFKDFLQRYLP--AQPGVIKTLEGDTIGEHSGL 233 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +TIGQR+GLG+ P +V D ++ + V +L ++ +E+ W+ Sbjct: 234 MYHTIGQRQGLGIGGLATHNEAPWYVAGKDLGNNVLWVVQGNDHPALFSDELWAQELFWI 293 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 +A +C K+R Q V ++ D V F++ + + GQ+ VFY + Sbjct: 294 SG----EAPSLPLRCKAKVRYRQPDQDCTVIQDKDHYRVSFDQPQRAITPGQSVVFYQDN 349 Query: 372 SNEARVLGGGIISGSKRSDAVEE 394 + LGGG+I+ + + A+ Sbjct: 350 A----CLGGGVITDTGAALAIAA 368 >gi|315634990|ref|ZP_07890271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aggregatibacter segnis ATCC 33393] gi|315476252|gb|EFU67003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aggregatibacter segnis ATCC 33393] Length = 383 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 126/388 (32%), Positives = 208/388 (53%), Gaps = 29/388 (7%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 +L++ L +N +V+ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 11 PKLSAEQLAEN-GTKKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 66 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 67 CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKEIKF 126 Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 L LGA+ +ATGHY+R R + + R +D +DQSYFL+ +++Q+ Sbjct: 127 KAFLEYAAEDLGANYIATGHYVRRRGADDN-----AQLLRGLDANKDQSYFLYTLSKKQV 181 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+GD++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 182 GQSLFPVGDIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 239 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297 + G I+GRH+G++ +T+GQR+GLG+ E +VV D ++ +IV + Sbjct: 240 RTVEGDIIGRHDGLMYHTLGQRKGLGIGGVKGASEEAWYVVEKDLVNNELIVAQGHDHSA 299 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSE 356 L + ++++W+ + + +C VK R Q VP ++ DD + V F++ + Sbjct: 300 LLSTGLIAQQLHWVD----RQPIREPLRCTVKTRYRQTDVPCTIEPIDDESIKVIFDEPQ 355 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384 + V GQ+ VFY + LGGGII Sbjct: 356 IAVTPGQSAVFYLDEV----CLGGGIIE 379 >gi|299783033|gb|ADJ41031.1| tRNA methyl transferase [Lactobacillus fermentum CECT 5716] Length = 377 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 131/390 (33%), Positives = 197/390 (50%), Gaps = 25/390 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSHTRVVVGMSGGVDSSVTALLLKQQGYDVVGVFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F + G TP P V CN+ +KF + QL Sbjct: 60 AKVATQIGIPYYSVNFEKEYWDRVFTYFIDEFKKGRTPNPDVICNKEIKFKAFIEYANQL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + D + R D +DQ+YFL QL + FPL Sbjct: 120 GADYVATGHYADLKR----DEAGNMHLMRAKDQTKDQTYFLSQLDHAQLDKVLFPLAGYT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K+ VR LA++ GL +ADK DS ICF+ + G + + + + A +G++ ++G+++G Sbjct: 176 KKEVRQLAKDAGLVVADKKDSVGICFIGEDGHFREFLSQYLP--AQQGEMQTVDGKVVGT 233 Query: 256 HNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 H G++ YTIGQR+GLG+ +P FV+ D + + VG E L + +I Sbjct: 234 HAGLMYYTIGQRKGLGLGGTKENNDPWFVIGKDITKNVLYVGQGYENEHLYATHMEASDI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366 +W+ D + F C K R Q V V+ +DDG V V + + GQA V Sbjct: 294 HWVDDVVSRYG--XEFHCTAKFRYRQKDEGVTVKLSDDGQMVTVTSDDPARAITPGQAVV 351 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396 FY D LG II + + + + Sbjct: 352 FYDGD----ECLGSAIIDRAYNQERQLQYV 377 >gi|153938615|ref|YP_001390533.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum F str. Langeland] gi|205810312|sp|A7GCM3|MNMA1_CLOBL RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 gi|152934511|gb|ABS40009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum F str. Langeland] gi|295318614|gb|ADF98991.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum F str. 230613] Length = 356 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 137/368 (37%), Positives = 209/368 (56%), Gaps = 15/368 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78 +V+V MSGGVDSSV A LLK GY+VIGVT+Q++ + + +++G CC+ V DARR Sbjct: 2 KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARR 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + I + YV ++++ F+ VI F Y G TP PC+ CN+ +KFS L +G Sbjct: 62 VANKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAMGI 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + R I+ + D ++DQ+Y L+ TQ QL P G KK Sbjct: 122 DYVATGHYAIIEKHND-----RYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A+E+GL + +K DS++ICF+ + +K EG+ V G ILG H G Sbjct: 177 KIREIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGSILGTHKG 236 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I+ YTIGQR+GLG+A G+P++VV ++ + V++G E L + ++ N++ D Sbjct: 237 IVYYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDTNYI----PFD 292 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + + KIR SQ P + +DG V V+F + + + GQ+ VFY D + Sbjct: 293 TLKEPMEVEAKIRYSQTPSKAIITPIEDGRVRVNFHEKQRAITKGQSVVFYKDD----LL 348 Query: 378 LGGGIISG 385 +GGGII Sbjct: 349 IGGGIIEK 356 >gi|227877338|ref|ZP_03995411.1| tRNA-methyltransferase [Lactobacillus crispatus JV-V01] gi|256842900|ref|ZP_05548388.1| tRNA methyl transferase [Lactobacillus crispatus 125-2-CHN] gi|256848726|ref|ZP_05554160.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus MV-1A-US] gi|262045866|ref|ZP_06018830.1| tRNA methyl transferase [Lactobacillus crispatus MV-3A-US] gi|293381734|ref|ZP_06627715.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus crispatus 214-1] gi|312977582|ref|ZP_07789329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus crispatus CTV-05] gi|227863194|gb|EEJ70640.1| tRNA-methyltransferase [Lactobacillus crispatus JV-V01] gi|256614320|gb|EEU19521.1| tRNA methyl transferase [Lactobacillus crispatus 125-2-CHN] gi|256714265|gb|EEU29252.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus MV-1A-US] gi|260573825|gb|EEX30381.1| tRNA methyl transferase [Lactobacillus crispatus MV-3A-US] gi|290921781|gb|EFD98802.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus crispatus 214-1] gi|310895321|gb|EFQ44388.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus crispatus CTV-05] Length = 375 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 130/393 (33%), Positives = 192/393 (48%), Gaps = 29/393 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TDDSGVCTATEDYEDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++V D I + +Y ++E+ + + V F Y G TP P V CN +KF L L Sbjct: 60 KKVADKIGIPYYSINFEKEYWHRVFEYFLDEYKKGRTPNPDVMCNSQIKFKSFLEFAMDL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY ++ D M RP D +DQ+YFL +Q+Q+ + FPL ++ Sbjct: 120 DADYIAMGHYAKTVK----DTNGVTHMMRPKDGNKDQTYFLSQLSQEQISKVIFPLANLT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + A G +V +G+++G H Sbjct: 176 KPQVREIALANGLATAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGKVVGEH 233 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G++ YTIGQR+GLG+ + P FVV D + +IV L R+ +++ Sbjct: 234 AGLMYYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSPLLYASRLNASDMS 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367 + D C K R Q + V V D+ V F++ V GQA V Sbjct: 294 FFTGKPDHDF---EMHCTAKFRYRQCDIGVTVKYHAADNTADVYFDEPARAVTPGQALVL 350 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 Y + LGGG I + + EE L ++ Sbjct: 351 YKGE----ECLGGGNIDAAYQ----EEKQLQLV 375 >gi|20808819|ref|NP_623990.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Thermoanaerobacter tengcongensis MB4] gi|24638308|sp|Q8R7F0|MNMA2_THETN RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|20517470|gb|AAM25594.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Thermoanaerobacter tengcongensis MB4] Length = 364 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 141/373 (37%), Positives = 212/373 (56%), Gaps = 14/373 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDA 76 K+ RVVV MSGGVDSSV A LLK GY+VIGVT+Q++ + +G CC+ V DA Sbjct: 3 KNNRVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDKDEEAVRVEGGCCSLAAVNDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV + I + +YV ++++ F+ VI F Y G TP PC+ CN+ +KF +LL + Sbjct: 63 RRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNKYIKFEELLKRAWMI 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 A +ATGHY D+ + R ++ + +D +DQ+Y L+ TQ QL + FPLG K Sbjct: 123 DAYYVATGHYAIKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKYK 179 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ VR+LA+ +GL +A K DSQ+ICFV Y ++ G+ G+ LG H Sbjct: 180 KDKVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGYH 239 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GII+YTIGQR+GLG+++G+PL+VV +D ++ V++G + + + N++ Sbjct: 240 KGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVYGDELISYNNNFISI--- 296 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375 D + + KIR + ++ +DG V+V F+ + + GQ+ VFY D Sbjct: 297 -DKLEKEMRVKAKIRYTAKEQDAVIRPLEDGRVFVKFDNPQRAITPGQSVVFYDGDI--- 352 Query: 376 RVLGGGIISGSKR 388 V+GGGII R Sbjct: 353 -VVGGGIIERKVR 364 >gi|167920433|ref|ZP_02507524.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei BCC215] gi|237813753|ref|YP_002898204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei MSHR346] gi|254180696|ref|ZP_04887294.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 1655] gi|184211235|gb|EDU08278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 1655] gi|237503455|gb|ACQ95773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei MSHR346] Length = 383 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 128/379 (33%), Positives = 179/379 (47%), Gaps = 30/379 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V Sbjct: 3 KRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 60 ADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQ 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K Sbjct: 120 TIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTR 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A ++GL A K DS ICF+ + + D + R G + +G+ +G H G+ Sbjct: 175 VREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGL 232 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 YT GQR+G+G+ GEP FV D S+ + V L + ++W+ Sbjct: 233 AFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWV 292 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVGVASGQACVF 367 + DG +C K R Q P Q D+ + F++ + V GQ+ V Sbjct: 293 AG----EPPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWAVTPGQSAVL 348 Query: 368 YTSDSNEARVLGGGIISGS 386 Y D LGGGII + Sbjct: 349 YDGDV----CLGGGIIESA 363 >gi|289578840|ref|YP_003477467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter italicus Ab9] gi|289528553|gb|ADD02905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter italicus Ab9] Length = 364 Score = 480 bits (1235), Expect = e-133, Method: Composition-based stats. Identities = 140/371 (37%), Positives = 211/371 (56%), Gaps = 14/371 (3%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYD 75 K+ RVVV MSGGVDSSV A LLK GY+VIGVT+Q++ + +G CC+ V D Sbjct: 2 KKNNRVVVGMSGGVDSSVSAYLLKEQGYEVIGVTMQIWQDKDEEAVRVEGGCCSLSAVND 61 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 ARRV + I + +YV ++++ F+ VI F Y G TP PC+ CN+ +KF +LL Sbjct: 62 ARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNKYIKFEELLKRAWM 121 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 + A +ATGHY D+ + R ++ + +D +DQ+Y L+ TQ QL + FPLG Sbjct: 122 IEAYYVATGHYAIKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKY 178 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 KK+ VR LA+++GL +A K DSQ+ICFV Y ++ G+ G+ LG Sbjct: 179 KKDEVRKLAKDLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGY 238 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H GII+YTIGQR+GLG+++G+PL+VV +D ++ V++G + + + N++ Sbjct: 239 HKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVYGDELISYNNNFISI-- 296 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374 D + + KIR + ++ +DG V+V F+ + + GQ+ VFY D Sbjct: 297 --DKLEGEMRVKAKIRYTAKEQDAVIRPLEDGKVFVKFDSPQRAITPGQSVVFYDGDI-- 352 Query: 375 ARVLGGGIISG 385 V+GGGII Sbjct: 353 --VVGGGIIER 361 >gi|254519285|ref|ZP_05131341.1| tRNA-specific 2-thiouridylase mnmA [Clostridium sp. 7_2_43FAA] gi|226913034|gb|EEH98235.1| tRNA-specific 2-thiouridylase mnmA [Clostridium sp. 7_2_43FAA] Length = 360 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 134/368 (36%), Positives = 215/368 (58%), Gaps = 15/368 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDAR 77 +VVV MSGGVDSSV A LLK GY+VIGVT++ ++ +R+G CC+ V DAR Sbjct: 2 KKKVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMKHFDDEDEDYIEREGGCCSLSSVEDAR 61 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV D + + YV ++++ F+ VI F Y G+TP PC+ CN+ +KF + L + +G Sbjct: 62 RVADKLGIPFYVLNFKDSFKEKVIDYFVQEYMEGKTPNPCIACNKHIKFDEFLRRAKGIG 121 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY + + + R ++ + D ++DQ+Y L+ TQ+QL P GD K Sbjct: 122 ADYVATGHYAK----IEKNEDGRYLLIKADDDKKDQTYALYNFTQEQLSQTLMPCGDYTK 177 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + +R++A+E+GL + +K DS++ICF+ + + EG+ V NG ILG+H Sbjct: 178 DKIREIAKEIGLAVHNKKDSEEICFIPDNNHGKYILNARPNQVREGNFVDKNGNILGKHK 237 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI+ YTIGQR+GLG+A+G P+FV ++ ++ V++GP E + + +++N++ Sbjct: 238 GIVYYTIGQRKGLGLALGTPIFVTDINPRTNEVVIGPEEDVFKTDLVAKDVNFI----PF 293 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 +++ + F K+R P + DG V V F++ + + GQ+ VFY + Sbjct: 294 NSLSEEITVFAKVRYQAKPSEAIISPLADGRVKVSFKEKQRAITKGQSVVFYDGNV---- 349 Query: 377 VLGGGIIS 384 V+GGGII Sbjct: 350 VVGGGIIE 357 >gi|53726189|ref|YP_103922.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia mallei ATCC 23344] gi|67642326|ref|ZP_00441084.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei GB8 horse 4] gi|121599684|ref|YP_991629.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia mallei SAVP1] gi|124385119|ref|YP_001027125.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia mallei NCTC 10229] gi|126448036|ref|YP_001082070.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia mallei NCTC 10247] gi|167000516|ref|ZP_02266328.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei PRL-20] gi|254178980|ref|ZP_04885634.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei ATCC 10399] gi|254202634|ref|ZP_04908997.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei FMH] gi|254207974|ref|ZP_04914324.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei JHU] gi|254355888|ref|ZP_04972166.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei 2002721280] gi|81604334|sp|Q62H98|MNMA_BURMA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205811421|sp|A3MP84|MNMA_BURM7 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205811429|sp|A2S5A6|MNMA_BURM9 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205811467|sp|A1V076|MNMA_BURMS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|52429612|gb|AAU50205.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei ATCC 23344] gi|121228494|gb|ABM51012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei SAVP1] gi|124293139|gb|ABN02408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei NCTC 10229] gi|126240906|gb|ABO03999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei NCTC 10247] gi|147746881|gb|EDK53958.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei FMH] gi|147751868|gb|EDK58935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei JHU] gi|148024863|gb|EDK83041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei 2002721280] gi|160694894|gb|EDP84902.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei ATCC 10399] gi|238523456|gb|EEP86894.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei GB8 horse 4] gi|243063570|gb|EES45756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia mallei PRL-20] Length = 383 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 129/395 (32%), Positives = 182/395 (46%), Gaps = 32/395 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V Sbjct: 3 KRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 60 ADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQ 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K Sbjct: 120 TIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTR 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A ++GL A K DS ICF+ + + D + R G + +G+ +G H G+ Sbjct: 175 VREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGL 232 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 YT GQR+G+G+ GEP FV D S+ + V L + ++W+ Sbjct: 233 AFYTFGQRKGIGLGGSKDGSGEPWFVAVKDIASNTLYVVQGHDHPWLRSRELVAGNVSWV 292 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVGVASGQACVF 367 + DG +C K R Q P Q D+ + F++ + V GQ+ V Sbjct: 293 AG----EPPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWAVTPGQSAVL 348 Query: 368 YTSDSNEARVLGGGIIS--GSKRSDAVEESLLSVI 400 Y D LGGGII + R+ + Sbjct: 349 YDGDV----CLGGGIIESAATGRAGTAPAGRAPAL 379 >gi|300361472|ref|ZP_07057649.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus gasseri JV-V03] gi|300354091|gb|EFJ69962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus gasseri JV-V03] Length = 383 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 128/384 (33%), Positives = 193/384 (50%), Gaps = 25/384 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++ + G C A +D D Sbjct: 11 DNSKIRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDD---TDDSGVCTATEDYEDV 67 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++V D I + +Y ++E+ + V F + Y G TP P V CN+ +KF L L Sbjct: 68 KKVADEIGIPYYSINFEKDYWERVFEYFLNEYKKGRTPNPDVMCNKEIKFKSFLDFAMDL 127 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY +++ D M RP D +DQ+YFL +Q QL + FPL ++ Sbjct: 128 DADYIAMGHYAATKV----DENGIVHMMRPKDGNKDQTYFLSQLSQDQLKKVIFPLANLT 183 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + A G +V +G+++G H Sbjct: 184 KPQVREIAIAAGLATAKKKDSTGICFIGERNFRKFLSEFLP--AQSGKMVTPDGKVVGEH 241 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309 G++ YTIGQR GLG+ + P FVV D + +IV L + ++ Sbjct: 242 AGLMYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYATSLDASGVS 301 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVF 367 + D KC K R Q V V + + D+ V+V+F++ V GQA VF Sbjct: 302 FFTGLPDHDI---DLKCTAKFRYRQPDVGVTMHYHAKDNTVHVEFDEPARAVTPGQAIVF 358 Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391 Y + LGG I + +++ Sbjct: 359 YNGE----ECLGGATIDRAYQNEK 378 >gi|330432069|gb|AEC17128.1| tRNA-specific 2-thiouridylase MnmA [Gallibacterium anatis UMN179] Length = 384 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 127/393 (32%), Positives = 206/393 (52%), Gaps = 29/393 (7%) Query: 2 VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61 ++ ++ +N + +V+V MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 7 TFTDLMTISPQQFAEN-QQKKVIVGMSGGVDSSVSAYILQQQGYQVEGLFMKNWEEDDDT 65 Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + CN Sbjct: 66 D---YCTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLQEYKAGRTPNPDILCN 122 Query: 122 RTVKFSDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 + +KF L LGAD +ATGHY+R R GDD + + R +D +DQSYFL+ Sbjct: 123 KEIKFKAFLEYAAEDLGADYIATGHYVRRR---GDDENAQ--LLRGLDGNKDQSYFLYTL 177 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R A Sbjct: 178 SHKQVGQSLFPVGELEKPVVRQIAEDLGLVTAKKKDSTGICFIGERKFKDFLARYLP--A 235 Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP- 294 GDI ++G+++GRH+G++ +T+GQR+GL + E +VV D + +IV Sbjct: 236 QPGDIRTVDGEVIGRHDGLMYHTLGQRKGLRIGGLKNAGDEAWYVVDKDLEHNELIVAQG 295 Query: 295 --RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVD 351 L + +++W+ + +C VK R Q VP + NDD + V Sbjct: 296 HNHPRLFSKGLIAGQLHWVD----RQPLKQPLRCTVKTRYRQQDVPCQIIPLNDDLIEVR 351 Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 ++ ++ V GQ+ VFY + LGGGII Sbjct: 352 LDEPQIAVTPGQSAVFYLDE----LCLGGGIIE 380 >gi|295695739|ref|YP_003588977.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Bacillus tusciae DSM 2912] gi|295411341|gb|ADG05833.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Bacillus tusciae DSM 2912] Length = 363 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 151/366 (41%), Positives = 213/366 (58%), Gaps = 14/366 (3%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVVAMSGGVDSSV AALLK GYDVIG+T++L + S +G CC+ DV DARRVC + Sbjct: 6 VVVAMSGGVDSSVTAALLKERGYDVIGITMRLRGGEETSSGRG-CCSVDDVSDARRVCQS 64 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + Y +Y E F VI F Y G TP PC+ CN +K+ LL LGAD LA Sbjct: 65 LGIPFYAVNYREAFEKRVIQYFEDEYKRGRTPNPCIACNMYMKYDLLLEQAVDLGADYLA 124 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R D+ + R ++ + D +DQ+Y L+ TQ+QL FPLG+ +K VR+ Sbjct: 125 TGHYARVLY---DESRGRYVLRKAEDRRKDQTYVLYHLTQEQLARTLFPLGEYEKSEVRE 181 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNGQILGRHNGIIN 261 +AR+ GL +A+K++SQDICF+ G Y + ++R A+ GD V G ++GRH G+ Sbjct: 182 MARKFGLRVANKAESQDICFIPNGDYGEFLRRRMGDSAVAPGDFVDTEGHVVGRHEGVSF 241 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQR+GLGVA+G P++VV + +RV++GP+E + + ++NWL + Sbjct: 242 YTIGQRKGLGVAVGHPVYVVDIQPERNRVVLGPKERVFSPGLVASKVNWLSLPRPNGPI- 300 Query: 322 DGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 + KIR + + V V+F++ + V GQA VFY + V+GG Sbjct: 301 ---RVSAKIRYGAPEAAATLYPEEAGRVRVEFDEPQRAVTPGQAVVFYRGE----EVVGG 353 Query: 381 GIISGS 386 G I S Sbjct: 354 GTIEKS 359 >gi|15603201|ref|NP_246275.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pasteurella multocida subsp. multocida str. Pm70] gi|14195272|sp|Q9CLA3|MNMA_PASMU RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|12721705|gb|AAK03420.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 383 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 122/395 (30%), Positives = 209/395 (52%), Gaps = 29/395 (7%) Query: 4 SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63 + L++ L +N + +V+ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 8 THFPPLSAEQLAEN-RKKKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD- 65 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + CN+ Sbjct: 66 --YCTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLQEYKAGRTPNPDILCNKE 123 Query: 124 VKFSDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 +KF L LGAD +ATGHY+R + + + R +D +DQSYFL+ ++ Sbjct: 124 IKFKAFLDYAAEDLGADYIATGHYVRRG-----EKDGQCQLLRGLDNNKDQSYFLYTLSK 178 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R A Sbjct: 179 DQVAQSLFPVGEIEKPIVRAIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQP 236 Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES 297 G+I + G+++GRH+G++ +T+GQR+GLG+ +P +VV D ++ ++V Sbjct: 237 GEIRTVEGKVVGRHDGLMYHTLGQRKGLGIGGVKGMGEDPFYVVEKDLVNNVLVVAQGHD 296 Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFE 353 L + +++W+ + +C VK R Q+ +P +Q ND+ + V F+ Sbjct: 297 NSALLSSGLIASQLHWVD----RQPIRQPVRCTVKTRYRQEDIPCEIQPINDETIRVVFD 352 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388 + ++ V GQ+ VFY + LGGG+I + Sbjct: 353 EPQIAVTPGQSAVFYQGEI----CLGGGVIETQIK 383 >gi|262372981|ref|ZP_06066260.1| tRNA methyl transferase [Acinetobacter junii SH205] gi|262313006|gb|EEY94091.1| tRNA methyl transferase [Acinetobacter junii SH205] Length = 377 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 122/384 (31%), Positives = 205/384 (53%), Gaps = 23/384 (5%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ V Sbjct: 2 QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTALEDLADAQAV 58 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + + ++ + + V F + YAAG TP P + CN+ +KF L LGAD Sbjct: 59 ADKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGAD 118 Query: 140 VLATGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R + + G+ + R +D +DQ+YFL A +++ FP+G+++K Sbjct: 119 FIATGHYARRGVSTQNSRGETYAPLLRGVDNNKDQTYFLHAVHGREINKTLFPVGEIEKP 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A ++ L A K DS ICF+ + ++ D +K+ A G IV NG+ +G H+G Sbjct: 179 EVRRIAEQLDLATAKKKDSTGICFIGERRFTDFLKQYLP--AQAGKIVLDNGKEVGEHHG 236 Query: 259 IINYTIGQR-----RGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 ++ YT+GQR G+ A FV++ D ++R+++G ++ +++ I+W Sbjct: 237 LMYYTLGQRGGIGIGGMKGAQEGAWFVLHKDIANNRLVIGQGHEHPLMQSKQLWSEAIDW 296 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN---DDGVYVDFEKSEVGVASGQACVF 367 + ++ GF+C K R Q + R+ ++G+ V+F++ + V GQ+ VF Sbjct: 297 VAGE--QEIPTTGFRCTAKTRYRQPDQACTIYRDEHTENGIRVEFDEPQRAVTPGQSVVF 354 Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391 Y+ + LGGG+I + Sbjct: 355 YSGEV----CLGGGVIHHTDAPQP 374 >gi|168183036|ref|ZP_02617700.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum Bf] gi|182673881|gb|EDT85842.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum Bf] Length = 356 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 137/368 (37%), Positives = 209/368 (56%), Gaps = 15/368 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78 +V+V MSGGVDSSV A LLK GY+VIGVT+Q++ + + +++G CC+ V DARR Sbjct: 2 KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARR 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + I + YV ++++ F+ VI F Y G TP PC+ CN+ +KFS L +G Sbjct: 62 VANKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAMGI 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + + R I+ + D ++DQ+Y L+ TQ QL P G KK Sbjct: 122 DYVATGHYAIIKKHND-----RYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A+E+GL + +K DS++ICF+ + +K EG+ V G ILG H G Sbjct: 177 KIREIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNILGTHKG 236 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I+ YTIGQR+GL +A G+P++VV ++ + V++G E L + ++ N++ D Sbjct: 237 IVYYTIGQRKGLSIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDTNYI----PFD 292 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + + KIR SQ P + DDG V V+F + + + GQ+ VFY D + Sbjct: 293 TLKEPMEVEAKIRYSQIPSKAIITPIDDGRVRVNFHEKQRAITKGQSVVFYKDD----LL 348 Query: 378 LGGGIISG 385 +GGGII Sbjct: 349 IGGGIIEK 356 >gi|295692704|ref|YP_003601314.1| tRNA-specific 2-thiouridylase mnma [Lactobacillus crispatus ST1] gi|295030810|emb|CBL50289.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus crispatus ST1] Length = 375 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 130/393 (33%), Positives = 192/393 (48%), Gaps = 29/393 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TDDSGVCTATEDYEDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++V D I + +Y ++E+ + + V F Y G TP P V CN +KF L L Sbjct: 60 KKVADKIGIPYYSINFEKEYWHRVFEYFLDEYKKGRTPNPDVMCNSQIKFKSFLEFAMDL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY ++ D M RP D +DQ+YFL +Q+Q+ + FPL ++ Sbjct: 120 DADYIAMGHYAKTVK----DANGVTHMMRPKDGNKDQTYFLSQLSQEQISKVIFPLANLT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + A G +V +G+++G H Sbjct: 176 KPQVREIALANGLATAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGKVVGEH 233 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G++ YTIGQR+GLG+ + P FVV D + +IV L R+ +++ Sbjct: 234 AGLMYYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSPLLYASRLKASDMS 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367 + D C K R Q + V V D+ V F++ V GQA V Sbjct: 294 FFTGKPDHDF---EMHCTAKFRYRQCDIGVTVKYHAADNTADVYFDEPARAVTPGQALVL 350 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 Y + LGGG I + + EE L ++ Sbjct: 351 YKGE----ECLGGGNIDAAYQ----EEKQLQLV 375 >gi|297545060|ref|YP_003677362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842835|gb|ADH61351.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 364 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 141/371 (38%), Positives = 212/371 (57%), Gaps = 14/371 (3%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYD 75 K+ RVVV MSGGVDSSV A LLK GY+VIGVT+Q++ + +G CC+ V D Sbjct: 2 KKNNRVVVGMSGGVDSSVSAYLLKEQGYEVIGVTMQIWQDKDEEAVRVEGGCCSLAAVND 61 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 ARRV + I + +YV ++++ F+ VI F Y G TP PC+ CN+ +KF +LL Sbjct: 62 ARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNKYIKFEELLKRAWM 121 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 + A +ATGHY D+ +RR ++ + +D +DQ+Y L+ TQ QL + FPLG Sbjct: 122 IDAYYVATGHYAIKEY---DEERRRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKY 178 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 KK+ VR LA+++GL +A K DSQ+ICFV Y ++ G+ G+ LG Sbjct: 179 KKDEVRKLAKDLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGY 238 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H GII+YTIGQR+GLG+++G+PL+VV +D ++ V++G + + + N++ Sbjct: 239 HKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVYGDELISYNNNFISI-- 296 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374 D + + KIR + ++ +DG V+V F+ + + GQ+ VFY D Sbjct: 297 --DKLEGEMRVKAKIRYTAKEQDAVIRPLEDGRVFVKFDSPQRAITPGQSVVFYDGDI-- 352 Query: 375 ARVLGGGIISG 385 V+GGGII Sbjct: 353 --VVGGGIIER 361 >gi|238853983|ref|ZP_04644340.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus gasseri 202-4] gi|238833428|gb|EEQ25708.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus gasseri 202-4] Length = 375 Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 128/384 (33%), Positives = 194/384 (50%), Gaps = 25/384 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + ++RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++ + G C A +D D Sbjct: 3 DNSEIRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDD---TDDSGVCTATEDYEDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++V D I + +Y ++E+ + V F + Y G TP P V CN+ +KF L L Sbjct: 60 KKVADEIGIPYYSINFEKDYWERVFEYFLNEYKKGRTPNPDVMCNKEIKFKSFLDFAMDL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY +++ D M RP D +DQ+YFL +Q QL + FPL ++ Sbjct: 120 DADYIAMGHYAATKV----DENGIVHMMRPKDGNKDQTYFLSQLSQDQLKKVIFPLANLT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + A G +V +G+++G H Sbjct: 176 KPQVREIAIYAGLATAKKKDSTGICFIGERNFKKFLSEFLP--AQSGKMVTPDGKVVGEH 233 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309 G++ YTIGQR GLG+ + P FVV D + +IV L + ++ Sbjct: 234 AGLMYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYATSLDASGVS 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVF 367 + D KC K R Q V V + + D+ V+V+F++ V GQA VF Sbjct: 294 FFTGQPEHDI---DLKCTAKFRYRQPDVGVTMHYHAKDNTVHVEFDEPARAVTPGQAIVF 350 Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391 Y + LGG I + +++ Sbjct: 351 YNGE----ECLGGATIDRAYQNEK 370 >gi|188583764|ref|YP_001927209.1| tRNA-specific 2-thiouridylase MnmA [Methylobacterium populi BJ001] gi|179347262|gb|ACB82674.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacterium populi BJ001] Length = 395 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 205/381 (53%), Positives = 270/381 (70%), Gaps = 8/381 (2%) Query: 5 EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64 + +NSLDL K P + RVVVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+ A+ RK Sbjct: 7 SSPAMNSLDLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRK 66 Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 G+CCAG+D++DAR V +T+ + HYV DYE+RFR +VI FA SY +GETP+PCV+CNR+V Sbjct: 67 GACCAGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFAESYLSGETPIPCVECNRSV 126 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 KF DLL + R LGA+ LATGHY+ SR + R + R +D RDQSYFL+ATT +Q Sbjct: 127 KFRDLLGMARDLGAEALATGHYVASRAQP----EGGRALYRALDPARDQSYFLYATTPEQ 182 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 L LRFPLG+ K+ R LARE+GL +ADK+DSQDICFV QG Y DV+ ++ A G+ Sbjct: 183 LAFLRFPLGERPKDETRALARELGLAVADKADSQDICFVPQGGYADVIAKLRPEAARPGE 242 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 IV L+G+ LG H GII+YT+GQRRGL +++GEPL+VV L+ ++RV+VGPR +L RI Sbjct: 243 IVDLDGRRLGEHEGIIHYTVGQRRGLKLSVGEPLYVVRLEPETARVVVGPRAALATRRIR 302 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASG 362 L ++NWLG + + V++RS+++P P + N + + V+ E GV+ G Sbjct: 303 LTDLNWLGSRAPDG--LADLPVAVRVRSTREPRPARLSWNAAEACLEVELVVPEDGVSPG 360 Query: 363 QACVFYTSDSNEARVLGGGII 383 QACV Y D A+VLGGG I Sbjct: 361 QACVIYADDGPRAQVLGGGTI 381 >gi|167039428|ref|YP_001662413.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter sp. X514] gi|300915481|ref|ZP_07132794.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter sp. X561] gi|307725247|ref|YP_003904998.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter sp. X513] gi|166853668|gb|ABY92077.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter sp. X514] gi|300888541|gb|EFK83690.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter sp. X561] gi|307582308|gb|ADN55707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter sp. X513] Length = 376 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 140/374 (37%), Positives = 211/374 (56%), Gaps = 14/374 (3%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYD 75 K+ RVVV MSGGVDSSV A LLK G+DVIGVT+Q++ + +G CC+ V D Sbjct: 14 KKNNRVVVGMSGGVDSSVSAYLLKEQGFDVIGVTMQIWQDKDEEAVRVEGGCCSLSAVND 73 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 ARRV + I + +YV ++++ F+ VI F Y G TP PC+ CN+ +KF +LL Sbjct: 74 ARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNKYIKFEELLKRAWM 133 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 + A +ATGHY D+ + R ++ + +D +DQ+Y L+ TQ QL + FPLG Sbjct: 134 IDAYYVATGHYAVKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKY 190 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 KK+ VR+LA+ +GL +A K DSQ+ICFV Y ++ G+ G+ LG Sbjct: 191 KKDEVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGY 250 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H GII+YTIGQR+GLG+++G+PL+VV +D ++ V++G + + + N++ Sbjct: 251 HKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVFGDELISYNNNFISI-- 308 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374 D + + KIR + ++ +DG V+V F+ + + GQ+ VFY D Sbjct: 309 --DKLEREMRVKAKIRYNAKEQDAVIRPLEDGKVFVKFDNPQRAITPGQSVVFYDGDI-- 364 Query: 375 ARVLGGGIISGSKR 388 V+GGG I R Sbjct: 365 --VVGGGTIERKVR 376 >gi|291562415|emb|CBL41231.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [butyrate-producing bacterium SS3/4] Length = 358 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 139/367 (37%), Positives = 201/367 (54%), Gaps = 14/367 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDAR 77 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + + G CC V DAR Sbjct: 2 KKKVVVGMSGGVDSSVAACLLKEQGYDVIGVTMQIWQEEDSCTVEENGGCCGLSAVEDAR 61 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV T+ + +YV ++ + F+ VI F + Y G TP PC+ CNR VK+ LL + ++G Sbjct: 62 RVAWTLGIPYYVMNFRKEFQKNVIDYFVAEYLHGRTPNPCIACNRYVKWEALLERSLEIG 121 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY R R + + +DQ+Y L+ TQ QL P+GD K Sbjct: 122 ADYIATGHYARISQLP----NGRYTIRNSVTAAKDQTYALYNLTQFQLSKTLMPIGDYTK 177 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + VR +A + GL +A K DS +ICFV Y ++R + + G+ V NG ILG+H Sbjct: 178 DEVRKIAEDRGLAVAKKKDSMEICFVPDNDYAGFIEREASDVPGCGNFVDKNGVILGKHK 237 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI +YT+GQR+GL +AMG P+FV + ++ V++G + + R++NW+ Sbjct: 238 GITHYTVGQRKGLNLAMGHPVFVTGIRPETNEVVIGDGNDVFSDHLICRDVNWMAIDGLH 297 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + KIR S P ++ DG V F++ + + GQA VFY + Sbjct: 298 G---EEKEVLAKIRYSHKGSPCIIRELPDGTVECQFKEPQRAITPGQAVVFYEDEC---- 350 Query: 377 VLGGGII 383 V+GGG I Sbjct: 351 VVGGGTI 357 >gi|256752949|ref|ZP_05493777.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter ethanolicus CCSD1] gi|256748170|gb|EEU61246.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter ethanolicus CCSD1] Length = 376 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 140/374 (37%), Positives = 211/374 (56%), Gaps = 14/374 (3%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYD 75 K+ RVVV MSGGVDSSV A LLK G+DVIGVT+Q++ + +G CC+ V D Sbjct: 14 KKNNRVVVGMSGGVDSSVSAYLLKEQGFDVIGVTMQIWQDKDEEAVRVEGGCCSLSAVND 73 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 ARRV + I + +YV ++++ F+ VI F Y G TP PC+ CN+ +KF +LL Sbjct: 74 ARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLKGRTPNPCIACNKYIKFEELLKRAWM 133 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 + A +ATGHY D+ + R ++ + +D +DQ+Y L+ TQ QL + FPLG Sbjct: 134 IDAYYVATGHYAVKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKY 190 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 KK+ VR+LA+ +GL +A K DSQ+ICFV Y ++ G+ G+ LG Sbjct: 191 KKDEVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGY 250 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H GII+YTIGQR+GLG+++G+PL+VV +D ++ V++G + + + N++ Sbjct: 251 HKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVFGDELISYNNNFISI-- 308 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374 D + + KIR + ++ +DG V+V F+ + + GQ+ VFY D Sbjct: 309 --DKLEREMRVKAKIRYNAKEQDAVIRPLEDGRVFVKFDNPQRAITPGQSVVFYDGDI-- 364 Query: 375 ARVLGGGIISGSKR 388 V+GGG I R Sbjct: 365 --VVGGGTIERKVR 376 >gi|295425130|ref|ZP_06817835.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus amylolyticus DSM 11664] gi|295065189|gb|EFG56092.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus amylolyticus DSM 11664] Length = 375 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 131/384 (34%), Positives = 190/384 (49%), Gaps = 25/384 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + K RVVV MSGGVDSSV A LLK+ GYDVIGV ++ ++ + G C A +D D Sbjct: 3 DNKKKRVVVGMSGGVDSSVSALLLKQQGYDVIGVFMKNWDD---TDDAGVCTATEDYEDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++V D I + +Y ++E+ + + V F + Y G TP P V CN +KF L L Sbjct: 60 KKVADKIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLEFAMDL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY ++ D M RP D +DQ+YFL +Q+Q+ + FPL D+ Sbjct: 120 DADYIAMGHYAKTVK----DENGIVHMMRPKDGNKDQTYFLSQLSQEQIKKVIFPLADLT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + A G +V +G ++G H Sbjct: 176 KPQVREIALANGLATAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGHVVGEH 233 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309 G++ YTIGQR+GLG+ + P FVV D + +IV L + +++ Sbjct: 234 AGLMYYTIGQRQGLGLGSTKQSTDPWFVVGKDLKKNELIVEQGYDSKLLYATELKASDMS 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367 + D F C K R Q V V V ++ V V F++ V GQA V Sbjct: 294 FFTGKPDHD---VEFHCSAKFRYRQCDVGVTVKYHAAENSVDVFFDEPARAVTPGQALVL 350 Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391 Y + LGGG I + + + Sbjct: 351 YNGE----ECLGGGFIDAAYQHEK 370 >gi|293374251|ref|ZP_06620579.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Turicibacter sanguinis PC909] gi|292647084|gb|EFF65066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Turicibacter sanguinis PC909] Length = 377 Score = 478 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 123/391 (31%), Positives = 192/391 (49%), Gaps = 28/391 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCA 69 K +V+V MSGGVDSSV A LLK GY+V GV ++ ++S + G+ C Sbjct: 3 ANKGKKVIVGMSGGVDSSVAAYLLKEQGYEVEGVFMRNWDSAANADVLGNPTLNDEVCPQ 62 Query: 70 GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 D DA+ V D + + + D+ + + + V + F Y AG TP P + CN+ VKF Sbjct: 63 EVDYNDAKTVADQLGIKLHRVDFVQEYWDRVFMYFLDEYRAGRTPNPDIMCNKEVKFKAF 122 Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 L LG D +A GHY R + M R +D +DQ+YFL TQ QL Sbjct: 123 LDYAMNLGCDYIAMGHYARVSH------EGEVQMLRGLDNNKDQTYFLSQLTQAQLSKTL 176 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 FP+G+++K VR +A ++ L A K DS +CF+ + + ++ A G + L Sbjct: 177 FPVGELQKSEVRAIAAKLDLATAKKKDSTGVCFIGERNFTQFLQNYLP--AQPGQMRTLE 234 Query: 250 GQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 G+++G H G++ YTIGQR+GLG+ G+ FV+ + + ++VG E + + Sbjct: 235 GEVVGEHIGLMYYTIGQRKGLGIGGKGDAWFVIGKNLKDNVLLVGQGFDHEYVYADEALV 294 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQA 364 +NW+ + V ++C K R Q +PV + +D+ + V + V GQA Sbjct: 295 SNVNWI----PSERFVGTYRCTAKFRYRQPDIPVELTWIDDETLNVKMLEPVRAVTPGQA 350 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEES 395 VFY + LGGG I + + + Sbjct: 351 AVFYLDEV----CLGGGRIEVAYKDKEARQY 377 >gi|229019618|ref|ZP_04176430.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH1273] gi|228741666|gb|EEL91854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus cereus AH1273] Length = 376 Score = 478 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 136/388 (35%), Positives = 199/388 (51%), Gaps = 23/388 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K P + RVV+ MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D Sbjct: 6 MNKLPHETRVVIGMSGGVDSSVAALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D VC+ I + +Y ++E+++ + V F Y AG TP P V CN+ +KF L Sbjct: 63 NDVIEVCNQIGIPYYAVNFEKQYWDKVFTYFLDEYRAGRTPNPDVMCNKEIKFKAFLEHA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G+ M R +D +DQ+YFL +Q+QL FPLG Sbjct: 123 IALGADYVATGHYARVAYMDGE-----YKMLRGVDDNKDQTYFLNQLSQEQLSKTMFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++KK +R++A GL A K DS ICF+ + + D + A G + L+G++ Sbjct: 178 ELKKPQIREMATAAGLATAAKKDSTGICFIGERNFKDFLSNYLP--AQPGVMQTLSGEVK 235 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ G+P F V + + + V E L + + Sbjct: 236 GKHDGLMYYTIGQRHGLGIGGNGDPWFAVGKNLKENILYVDQGFHNELLYGDEVIATNVG 295 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + E FKC K R Q V VQ +++ V + ++ + GQA VFY Sbjct: 296 WVSNKAKET----EFKCTAKFRYRQADNKVTVQIVDENTVRILCDEPIRAITPGQAVVFY 351 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 D LGG I S + L Sbjct: 352 DGD----ECLGGATIDEVYHSGKKLDYL 375 >gi|307822309|ref|ZP_07652541.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacter tundripaludum SV96] gi|307736875|gb|EFO07720.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacter tundripaludum SV96] Length = 363 Score = 478 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 111/375 (29%), Positives = 189/375 (50%), Gaps = 28/375 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LL G+ V G+ ++ + ++ C A +D+ DA++VC Sbjct: 3 KKVIVGMSGGVDSSVTALLLLEQGHQVTGLFMKNWEEDDGTE---QCTAMEDLADAQQVC 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139 D + + ++ + + V F S + AG TP P + CN+ VKF L+ LGA+ Sbjct: 60 DKLGIELKTVNFAAEYWDEVFEVFLSEFKAGRTPNPDILCNKHVKFKAFLNYAIEDLGAE 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + + + +D ++QSYFL+ Q+QL FP+G + K Sbjct: 120 YIATGHYARVS-----EQDCEYFLLKGLDPNKEQSYFLYTLGQKQLSRTLFPIGHLHKPE 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R +A + G + K DS ICF+ + K+ + ++R G++ GQ +G+H+G+ Sbjct: 175 IRAMADKAGFANSRKKDSTGICFIGERKFTEFLQRYLP--TQPGEMRTPQGQHIGKHHGL 232 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + YT+GQR+GLG+ EP +V+ D ++ +IVG + + + +++W Sbjct: 233 MYYTLGQRQGLGIGGVKNAPDEPWYVLEKDLENNILIVGQGHDHPLMLHNTLEASQLDWC 292 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTS 370 + + +C K R Q ++ +D F++ + + GQ+ VFY Sbjct: 293 SNR----PLTKTIRCTAKTRYRQADQLCSLEPIGNDRCKAVFDQPQRAITPGQSVVFYDG 348 Query: 371 DSNEARVLGGGIISG 385 + LGGGII Sbjct: 349 EI----CLGGGIIES 359 >gi|227499265|ref|ZP_03929377.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaerococcus tetradius ATCC 35098] gi|227218674|gb|EEI83905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaerococcus tetradius ATCC 35098] Length = 367 Score = 478 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 137/381 (35%), Positives = 204/381 (53%), Gaps = 24/381 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+ KD +VVV +SGGVDSSV A LLK +GYDV+G+ ++ ++ + G C A D D Sbjct: 2 KDKKDTKVVVGISGGVDSSVAALLLKEEGYDVVGIFMKNWDD---TDENGVCTAEVDYED 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A VC+ I++ +Y ++E+ + + V F Y G TP P + CN+ +KF L + Sbjct: 59 AVAVCNQIDIPYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAKS 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY R + +M R +D +DQ+YFL +Q+Q+ D+ FP+G++ Sbjct: 119 LGADFVATGHYARVDRSADE-----TVMLRGVDSNKDQTYFLSQLSQEQIKDVLFPVGEL 173 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR++A + L ADK DS ICF+ + + + + A EG+IV G ILGR Sbjct: 174 EKSQVREIAHKYKLATADKKDSTGICFIGERDFNEFLSNYLP--AQEGNIVDTEGNILGR 231 Query: 256 HNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 H G++ +TIGQRRGLG+ GE FV D + +IV L +++Y E + + Sbjct: 232 HEGLMFHTIGQRRGLGIGGEGEAWFVCGKDLKKNELIVCQGKNNPLLFSNKLYASEFSTI 291 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 D + + F C K R Q + V+ DG + V ++++ V GQA VFY Sbjct: 292 SD----KEIPEEFSCTAKFRYRQADINAHVKVLGDGKIEVTYDRT-KAVTPGQAAVFYLG 346 Query: 371 DSNEARVLGGGIISGSKRSDA 391 D LG II D Sbjct: 347 DV----CLGSAIIDEVYNDDK 363 >gi|319898139|ref|YP_004136336.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae F3031] gi|317433645|emb|CBY82030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae F3031] Length = 383 Score = 478 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 123/388 (31%), Positives = 206/388 (53%), Gaps = 29/388 (7%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 +L L +N +V+ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 12 PQLTQEQLARNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 67 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 68 CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 127 Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 L LGAD +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ Sbjct: 128 KAFLEYAAEDLGADYIATGHYVRR---TGDNENAK--LLRGLDPNKDQSYFLYTLSHKQV 182 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 183 GQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 240 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297 ++ +I+GRH+G++ +T+GQR+GL + + +VV D ++ +IV Sbjct: 241 RTVDDEIIGRHDGLMYHTLGQRKGLDIGGLKNAGDKAWYVVDKDVENNELIVAQGHDHPR 300 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356 L + +++W+ + + + +C VK R Q +P ++ DD + V F++ + Sbjct: 301 LFSKGLIASQLHWVD----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQ 356 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGGII+ Sbjct: 357 SAVTPGQSAVFYLGEV----CLGGGIIA 380 >gi|241664140|ref|YP_002982500.1| tRNA-specific 2-thiouridylase MnmA [Ralstonia pickettii 12D] gi|240866167|gb|ACS63828.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia pickettii 12D] Length = 370 Score = 478 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 132/380 (34%), Positives = 189/380 (49%), Gaps = 27/380 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 R+VV MSGGVDSSV A LLK+ GYDV+G+ ++ + S+ C QD D Sbjct: 2 SKKRIVVGMSGGVDSSVTAWLLKQQGYDVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I V ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADLIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R G R + + D +DQSYFL Q QL FPLG+M K Sbjct: 119 DTIATGHYARVREVDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEMPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A E+GL A K DS ICF+ + + D + R G I +G+ +G H G Sbjct: 174 KVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPIKTPDGKTIGEHIG 231 Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT+GQR+G+G+ G+ +V D ++ + V L H ++ +++W Sbjct: 232 LAFYTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + A V+G K R Q P V R DG + + F +++ V GQ+ V Y Sbjct: 292 VAG----QAPVEGTDLGAKTRYRQADAPCTVARAGDGALTLAFPEAQWAVTPGQSAVLYD 347 Query: 370 SDSNEARVLGGGIISGSKRS 389 + LGGGIIS ++ + Sbjct: 348 GEV----CLGGGIISAAEPA 363 >gi|83645146|ref|YP_433581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Hahella chejuensis KCTC 2396] gi|123533626|sp|Q2SJL8|MNMA_HAHCH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|83633189|gb|ABC29156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Hahella chejuensis KCTC 2396] Length = 364 Score = 478 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 127/378 (33%), Positives = 193/378 (51%), Gaps = 26/378 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV+V +SGGVDSSV A LLK GY+V G+ ++ ++ ++ C A D+ DA++ Sbjct: 5 RNQRVIVGISGGVDSSVSAYLLKALGYEVEGLFMKNWDEDDGTE---YCTALSDLEDAQK 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD + + + + + + V F Y AG TP P + CN+ +KF L + LG Sbjct: 62 VCDKLGIKLHTASFSAEYWDRVFEHFLDEYRAGRTPNPDILCNKEIKFKAFLDYAQALGG 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ATGHY + + + + D ++QSYFL A Q L FP+G + K+ Sbjct: 122 DLIATGHYAQFSRF-----GEHTYLMKGADPSKEQSYFLHAVPGQALARTLFPVGGLLKK 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +ARE+ L DK DS ICF+ + K+ D +K A G IV G+ +GRH G Sbjct: 177 EVRRIARELDLITHDKKDSTGICFIGERKFSDFLKTYLP--AQPGKIVTDKGEEIGRHQG 234 Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINW 310 ++ +TIGQR+GLG+ P +VV D +++ ++V G L + +++W Sbjct: 235 LMYHTIGQRQGLGIGGLKGYDDAPWYVVEKDLDNNELVVAQGGDHPRLFSAGLTASKLDW 294 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 + F C+ K R Q V D GV V F+K + V GQ+ VFY Sbjct: 295 INGV----PAKSSFSCYAKTRYRQPDQLCRVDVQDGGVRVTFDKRQRAVTPGQSVVFYDG 350 Query: 371 DSNEARVLGGGIISGSKR 388 AR LGGG+I + Sbjct: 351 ----ARCLGGGVIESVFK 364 >gi|187780204|ref|ZP_02996677.1| hypothetical protein CLOSPO_03800 [Clostridium sporogenes ATCC 15579] gi|187773829|gb|EDU37631.1| hypothetical protein CLOSPO_03800 [Clostridium sporogenes ATCC 15579] Length = 359 Score = 478 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 137/368 (37%), Positives = 209/368 (56%), Gaps = 15/368 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78 +V+V MSGGVDSSV A LLK GY+VIGVT+Q++ + + +++G CC+ V DARR Sbjct: 5 KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDDEEFIEKEGGCCSLSAVADARR 64 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + I + YV ++++ F+ VI F Y G TP PC+ CN+ +KFS L +G Sbjct: 65 VANKIGIPFYVMNFKDAFKRNVIDYFVDEYMEGRTPNPCIACNKFIKFSSFLDKAMAMGI 124 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + R I+ + D ++DQ+Y L+ TQ QL P G KK Sbjct: 125 DYVATGHYAIIEKHND-----RYIIKKSEDDKKDQTYALYNLTQFQLERTLMPCGQYKKS 179 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A+E+GL + +K DS++ICF+ + +K EG+ V G ILG H G Sbjct: 180 KIREIAKEIGLRVHNKKDSEEICFIPDNDHGRYIKNRFPNKVREGNFVDKQGNILGTHKG 239 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I+ YTIGQR+GLG+A G+P++VV ++ + V++G E L + ++ N++ D Sbjct: 240 IVYYTIGQRKGLGIAFGKPMYVVDINPFRNEVVLGDLEDLLNTELIAKDTNYI----PFD 295 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + + KIR SQ P + +DG V V+F + + + GQ+ VFY D + Sbjct: 296 TLKEPMEVEAKIRYSQIPSKAIITTVEDGRVRVNFHEKQRAITKGQSVVFYKDD----LL 351 Query: 378 LGGGIISG 385 +GGGII Sbjct: 352 IGGGIIEK 359 >gi|119476176|ref|ZP_01616528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [marine gamma proteobacterium HTCC2143] gi|119450803|gb|EAW32037.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [marine gamma proteobacterium HTCC2143] Length = 372 Score = 478 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 124/390 (31%), Positives = 204/390 (52%), Gaps = 27/390 (6%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +N++ K P D +V+V MSGGVDSSV A LL++ GY V G+ ++ ++ S+ C Sbjct: 1 MNNIAATK-PSDQKVIVGMSGGVDSSVSALLLQQQGYQVEGLFMKNWDEDDGSE---YCT 56 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 A D+ DA+ VCD + ++ + ++ + + V F + Y AG TP P V CNR +KF Sbjct: 57 AKDDLADAQAVCDQLKITLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDVLCNREIKFKA 116 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 L LGAD +ATGHY+R R + + D +DQSYFL A + ++ Sbjct: 117 FLDYALVLGADYIATGHYVRKHQMGD-----RAQLIKGRDNNKDQSYFLHAVSGTEIAKT 171 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 FP+GD++K VR +A + L +K DS ICF+ + ++ D +++ A G I Sbjct: 172 LFPVGDLEKPDVRAIAEKYSLTTHNKKDSTGICFIGERRFKDFLQQYLP--AQPGMIEDT 229 Query: 249 NGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVG---PRESLEV 300 +G I+G H+G++ +TIGQR+GLG+ P +VV D + +I+ L Sbjct: 230 DGSIMGGHSGLMYHTIGQRQGLGIGGVSGAGDAPWYVVDKDLKRNVLIIAQGSQHHRLFK 289 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360 +++ EI+W+ + D + +C KIR Q +++ G + F+ + + Sbjct: 290 QGLFVSEIHWINN----DGITLPHRCKAKIRYRQVDQNCEIRKLSVGYEIVFDLPQRAIT 345 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSD 390 GQ+ VFY ++ LGGG+I + ++ Sbjct: 346 PGQSVVFYDNEI----CLGGGVIEAAFNAN 371 >gi|325265024|ref|ZP_08131751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium sp. D5] gi|324029714|gb|EGB91002.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium sp. D5] Length = 356 Score = 478 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 141/365 (38%), Positives = 206/365 (56%), Gaps = 15/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + G CC V DARRV Sbjct: 3 KVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDRAVQEENGGCCGLSAVEDARRV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + +YV ++++ F+ VI F Y G TP PC+ CNR VK+ LL + +GA+ Sbjct: 63 AAELEIPYYVMNFKQEFKEHVIDYFVEEYRNGRTPNPCIACNRYVKWESLLHRSMAIGAE 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R + R L +DQ+Y L+ TQ+QL P+G+ K+ Sbjct: 123 YIATGHYARVVKLD----NGRFTLRRSATLAKDQTYALYNLTQEQLEHTLMPVGEYSKDE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++GL +A+K DSQDICFV G Y ++ EG+ V +G++LGRH GI Sbjct: 179 VRRIAEKIGLMVANKPDSQDICFVPDGDYASYIEETAGIRMPEGNFVSSDGRVLGRHKGI 238 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YT+GQR+GLG+A+G P FV+ + +++ V++G E H + +N++ + Sbjct: 239 THYTVGQRKGLGLALGYPAFVLEIRPDTNEVVIGTNEESMTHTLKADRLNFMSV----ED 294 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + + F KIR + +++ D V FE+ + V GQA VFY + VL Sbjct: 295 LTEPLRVFTKIRYNHKGAWCIIEKTGTDEVLCTFEEPQRAVTPGQAVVFYDGE----YVL 350 Query: 379 GGGII 383 GGG I Sbjct: 351 GGGTI 355 >gi|268319690|ref|YP_003293346.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus johnsonii FI9785] gi|262398065|emb|CAX67079.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus johnsonii FI9785] Length = 375 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 129/384 (33%), Positives = 191/384 (49%), Gaps = 25/384 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++ + G C A +D D Sbjct: 3 DNSKIRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDD---TDDSGVCTATEDYEDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++V D I + +Y ++E+ + V F Y G TP P V CN+ +KF L L Sbjct: 60 KKVADEIGIPYYSINFEKDYWERVFEYFLDEYKKGRTPNPDVMCNKEIKFKSFLDFAMDL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY +R+ D M RP D +DQ+YFL +Q QL + FPL ++ Sbjct: 120 DADYIAMGHYAATRV----DDNGVVHMMRPKDGNKDQTYFLSQLSQDQLKKVIFPLANLT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + A G +V +G+++G H Sbjct: 176 KPQVREIAIASGLATAKKKDSTGICFIGERNFRKFLSEFLP--AQSGKMVTPDGKVVGEH 233 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309 G++ YTIGQR GLG+ + P FVV D + +IV L + ++ Sbjct: 234 AGLMYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIVDQGYDSKLLYATSLDASGVS 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACVF 367 + D KC K R Q V V + D+ V+V+F++ V GQA VF Sbjct: 294 FFTGQPDHD---VDLKCTAKFRYRQPDVGVTMHYRAKDNTVHVEFDEPARAVTPGQAIVF 350 Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391 Y + LGG I + +++ Sbjct: 351 YNGE----ECLGGATIDRAYQNEK 370 >gi|187922695|ref|YP_001894337.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia phytofirmans PsJN] gi|229486336|sp|B2SX74|MNMA_BURPP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|187713889|gb|ACD15113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia phytofirmans PsJN] Length = 383 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 128/392 (32%), Positives = 182/392 (46%), Gaps = 27/392 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 +VVV MSGGVDSSV A LLK GYDV+G+ ++ + S+ C QD D Sbjct: 2 SKQKVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R R ++ R + + D +DQSYFL Q QL FPLG++ K Sbjct: 119 ETIATGHYARVR---QNERNGRFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKT 175 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A ++ L A K DS ICF+ + + D + R G + +G+++G H G Sbjct: 176 KVREIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTTDGKVVGEHIG 233 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT GQR+G+G+ GEP FV D S+ + V L H + +W Sbjct: 234 LAFYTFGQRKGIGLGGSKDGSGEPWFVAGKDIASNTLYVAQGHDHAWLLSHTLSAGNTSW 293 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG---VYVDFEKSEVGVASGQACVF 367 + + DGF C K R Q P G ++F+ ++ V GQ+ V Sbjct: 294 VAG----EPPADGFACGAKTRYRQADAPCTFSSAGSGEGLFELNFDAAQWAVTPGQSAVL 349 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSV 399 Y D LGGGII + V Sbjct: 350 YDGDV----CLGGGIIEHAVTGQPVAREPQKA 377 >gi|241667518|ref|ZP_04755096.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876064|ref|ZP_05248774.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842085|gb|EET20499.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 359 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 133/374 (35%), Positives = 206/374 (55%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +++V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ Sbjct: 2 QNKKIIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F + Y AG TP P + CN+ +KF LS LG Sbjct: 59 VCDSIGIPFKKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R++ V DDG + + + +D +DQ+YFL+ Q+QL FP+GD++K Sbjct: 119 DYIATGHYARTK--VADDGSVQ--LVKGLDDSKDQTYFLYTLGQEQLKQTMFPIGDIEKS 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ D + + A +G+I NG +G H+G Sbjct: 175 RVREIAKENNLVTFDKKDSTGICFIGERKFKDFLSKFLP--AQKGEIHDENGIKIGMHDG 232 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310 ++ YTIGQR+GLG+ + P F D ++ + + G L + +++W Sbjct: 233 LMYYTIGQRQGLGIGGVKNRPEIPWFAAQKDLENNVLIAVQGHDHPMLFKDTLQAIDLSW 292 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + A D F+C K+R Q V+ N+DG V V F++ + + GQ+ VFY Sbjct: 293 VAGS----APADSFRCSAKVRYRQKDQSCSVEVNNDGSVNVVFDEPQRAITPGQSVVFYD 348 Query: 370 SDSNEARVLGGGII 383 +D LGGGII Sbjct: 349 NDV----CLGGGII 358 >gi|254785838|ref|YP_003073267.1| tRNA U34 sulfurtransferase [Teredinibacter turnerae T7901] gi|237686421|gb|ACR13685.1| tRNA U34 sulfurtransferase [Teredinibacter turnerae T7901] Length = 367 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 122/382 (31%), Positives = 194/382 (50%), Gaps = 28/382 (7%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 + K +V+V MSGGVDSSV A LL + GY V G+ ++ +N ++ C A Sbjct: 1 MATSKPASQTKVIVGMSGGVDSSVSALLLLQQGYQVEGLFMKNWNEDDGTE---YCTAMT 57 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DA VC + + + ++ ++ + V F Y AG TP P + CNR +KF L Sbjct: 58 DLLDAANVCQKLGIPLHTANFATQYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKVFLD 117 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 QLGA+ +ATGHY R+R + + +C+ +D +DQSYFL A ++ FP Sbjct: 118 YAEQLGANYIATGHYARTR-----NKAGQTQLCKGLDGNKDQSYFLHAVEEKAFAKTLFP 172 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 +G+++K VR+LA L +K DS ICF+ + ++ D ++ A G IV G+ Sbjct: 173 IGELEKPRVRELAEAHDLVTHNKKDSTGICFIGERRFKDFLQTYLP--AQPGKIVTPEGE 230 Query: 252 ILGRHNGIINYTIGQRR-----GLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRI 303 ILG H G++ YTIGQR+ G+ A + +V + + + +IV G E L + Sbjct: 231 ILGDHQGLMYYTIGQRQGLGIGGIAGAHEDAWYVARKNLSDNTLIVVQGGSHELLLETAL 290 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASG 362 ++W+ +GF+C+ K R Q +Q+ + D + V F++ + + G Sbjct: 291 VANGMHWIN-----QPQEEGFRCYAKTRYRQPDQRCTLQKVSGDTITVVFDEPQRAITPG 345 Query: 363 QACVFYTSDSNEARVLGGGIIS 384 Q+ V Y D LGGG+I Sbjct: 346 QSIVLYDGDV----CLGGGVID 363 >gi|42518912|ref|NP_964842.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus johnsonii NCC 533] gi|73920127|sp|Q74JW9|MNMA_LACJO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|41583198|gb|AAS08808.1| probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus johnsonii NCC 533] Length = 375 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 129/384 (33%), Positives = 191/384 (49%), Gaps = 25/384 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++ + G C A +D D Sbjct: 3 DNSKIRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDD---TDDSGVCTATEDYEDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++V D I + +Y ++E+ + V F Y G TP P V CN+ +KF L L Sbjct: 60 KKVADEIGIPYYSINFEKDYWERVFEYFLDEYKKGRTPNPDVMCNKEIKFKSFLDFAMDL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY +R+ D M RP D +DQ+YFL +Q QL + FPL ++ Sbjct: 120 DADYIAMGHYAATRV----DDNGVVHMMRPKDGNKDQTYFLSQLSQDQLKKVIFPLANLT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + A G +V +G+++G H Sbjct: 176 KPQVREIAIASGLATAKKKDSTGICFIGERNFKKFLSEFLP--AQSGKMVTPDGKVVGEH 233 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309 G++ YTIGQR GLG+ + P FVV D + +IV L + ++ Sbjct: 234 AGLMYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYATSLDASGVS 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACVF 367 + D KC K R Q V V + D+ V+V+F++ V GQA VF Sbjct: 294 FFTGQPDHD---VDLKCTAKFRYRQPDVGVTMHYRAKDNTVHVEFDEPARAVTPGQAIVF 350 Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391 Y + LGG I + +++ Sbjct: 351 YNGE----ECLGGATIDRAYQNEK 370 >gi|329667542|gb|AEB93490.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus johnsonii DPC 6026] Length = 375 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 129/384 (33%), Positives = 191/384 (49%), Gaps = 25/384 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++ + G C A +D D Sbjct: 3 DNSKIRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDD---TDDSGVCTATEDYEDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++V D I + +Y ++E+ + V F Y G TP P V CN+ +KF L L Sbjct: 60 KKVADEIGIPYYSINFEKDYWERVFEYFLDEYKKGRTPNPDVMCNKEIKFKSFLDFAMDL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY +R+ D M RP D +DQ+YFL +Q QL + FPL ++ Sbjct: 120 DADYIAMGHYAATRV----DDNGVVHMMRPKDGNKDQTYFLSQLSQDQLKKVIFPLANLT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + A G +V +G+++G H Sbjct: 176 KPQVREIAIASGLATAKKKDSTGICFIGERNFRKFLSEFLP--AQSGKMVTPDGKVVGEH 233 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309 G++ YTIGQR GLG+ + P FVV D + +IV L + ++ Sbjct: 234 AGLMYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYATSLDASGVS 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACVF 367 + D KC K R Q V V + D+ V+V+F++ V GQA VF Sbjct: 294 FFTGQPDHD---VDLKCTAKFRYRQPDVGVTMHYRAKDNTVHVEFDEPARAVTPGQAIVF 350 Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391 Y + LGG I + +++ Sbjct: 351 YNGE----ECLGGATIDRAYQNEK 370 >gi|309781297|ref|ZP_07676033.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia sp. 5_7_47FAA] gi|308919710|gb|EFP65371.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia sp. 5_7_47FAA] Length = 370 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 132/380 (34%), Positives = 188/380 (49%), Gaps = 27/380 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 R+VV MSGGVDSSV A LLK+ GYDV+G+ ++ + S+ C QD D Sbjct: 2 SKKRIVVGMSGGVDSSVTAWLLKQQGYDVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I V ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADLIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R G R + D +DQSYFL Q QL FPLG+M K Sbjct: 119 DTIATGHYARVREVDG-----RFELLTAFDHTKDQSYFLHRLNQAQLSRTLFPLGEMPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A E+GL A K DS ICF+ + + D + R G I +G+ +G H G Sbjct: 174 KVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPIKTPDGKTIGEHIG 231 Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT+GQR+G+G+ G+ +V D ++ + V L H ++ +++W Sbjct: 232 LAFYTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + A V+G K R Q P V R DG + + F +++ V GQ+ V Y Sbjct: 292 VAG----QAPVEGTNLGAKTRYRQADAPCTVARAGDGALTLAFPEAQWAVTPGQSAVLYD 347 Query: 370 SDSNEARVLGGGIISGSKRS 389 + LGGGIIS ++ + Sbjct: 348 GEV----CLGGGIISAAEPA 363 >gi|302879502|ref|YP_003848066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Gallionella capsiferriformans ES-2] gi|302582291|gb|ADL56302.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Gallionella capsiferriformans ES-2] Length = 366 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 127/380 (33%), Positives = 187/380 (49%), Gaps = 27/380 (7%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 K+ RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ + S+ C + QD+ DA Sbjct: 2 NKNKRVVVGMSGGVDSSVTALLLKQQGYDVIGLFMKNWEDDDNSE---YCSSRQDLLDAV 58 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 V DTI + ++ + +++ V F Y +G TP P + CN +KF L +LG Sbjct: 59 SVADTIGIPIEAVNFAKEYKDRVFSAFLREYQSGRTPNPDILCNAEIKFKAFLDHAIELG 118 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY + R G + + D +DQSYFL Q QL FPLG + K Sbjct: 119 ADTIATGHYAQVREVDG-----LFQLLKATDASKDQSYFLHRLNQAQLSRAMFPLGRLLK 173 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 +R +A + GL K DS ICF+ + + + + G++ G+ +GRH Sbjct: 174 SEIRKIAEQHGLCNFAKKDSTGICFIGERPFREFLSGYLP--TQPGEMRTPEGKRVGRHI 231 Query: 258 GIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G+ YT+GQR+GLG+ GEP FV D ++R+IV +L H + + + Sbjct: 232 GLSFYTLGQRQGLGIGGEKNSSGEPWFVAAKDMENNRLIVVQGHDHPALLSHTLTALDAH 291 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFY 368 W+ A K R Q P F +++ D + F++ + V GQ+ V Y Sbjct: 292 WISGS----APKTNHPYAAKTRYRQADAPCHFTEQSGDQCSIAFDQPQWAVTPGQSVVLY 347 Query: 369 TSDSNEARVLGGGIISGSKR 388 + LGG II +R Sbjct: 348 EGEV----CLGGAIIEAGQR 363 >gi|205815331|sp|B0K584|MNMA1_THEPX RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 Length = 364 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 140/374 (37%), Positives = 211/374 (56%), Gaps = 14/374 (3%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYD 75 K+ RVVV MSGGVDSSV A LLK G+DVIGVT+Q++ + +G CC+ V D Sbjct: 2 KKNNRVVVGMSGGVDSSVSAYLLKEQGFDVIGVTMQIWQDKDEEAVRVEGGCCSLSAVND 61 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 ARRV + I + +YV ++++ F+ VI F Y G TP PC+ CN+ +KF +LL Sbjct: 62 ARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLRGRTPNPCIACNKYIKFEELLKRAWM 121 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 + A +ATGHY D+ + R ++ + +D +DQ+Y L+ TQ QL + FPLG Sbjct: 122 IDAYYVATGHYAVKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKY 178 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 KK+ VR+LA+ +GL +A K DSQ+ICFV Y ++ G+ G+ LG Sbjct: 179 KKDEVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGY 238 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H GII+YTIGQR+GLG+++G+PL+VV +D ++ V++G + + + N++ Sbjct: 239 HKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVFGDELISYNNNFISI-- 296 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374 D + + KIR + ++ +DG V+V F+ + + GQ+ VFY D Sbjct: 297 --DKLEREMRVKAKIRYNAKEQDAVIRPLEDGKVFVKFDNPQRAITPGQSVVFYDGDI-- 352 Query: 375 ARVLGGGIISGSKR 388 V+GGG I R Sbjct: 353 --VVGGGTIERKVR 364 >gi|114798727|ref|YP_759370.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Hyphomonas neptunium ATCC 15444] gi|123323559|sp|Q0C4H3|MNMA_HYPNA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|114738901|gb|ABI77026.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Hyphomonas neptunium ATCC 15444] Length = 394 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 207/386 (53%), Positives = 264/386 (68%), Gaps = 6/386 (1%) Query: 5 EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64 A R+NSL K P + RVV AMSGGVDSSVVAA+LK +GYDVIG+TLQLY+ A ++K Sbjct: 9 PAGRVNSLGFAKPPHETRVVAAMSGGVDSSVVAAMLKAEGYDVIGITLQLYDHGAAIEKK 68 Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 G+CCAGQD++DAR V D I + HYV DYE RFR V+ FA +Y +G TP+PC+ CN+TV Sbjct: 69 GACCAGQDIHDARNVSDAIGIPHYVLDYESRFREQVMEDFADTYLSGSTPIPCIRCNQTV 128 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 KF+DLL+ ++LGAD LATGHYIR DG + R D RDQSYFLFATT+ Q Sbjct: 129 KFADLLATAKELGADCLATGHYIRR-----TDGPEGPELHRAQDASRDQSYFLFATTRAQ 183 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 L LRFPLG + K VR+LA + L +A K DSQDICFV G Y VV+++ G G+ Sbjct: 184 LDFLRFPLGSLPKSEVRELAEKFALQVAAKPDSQDICFVPDGSYAKVVEKLRPGSGRGGE 243 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 IVHL+G++LG+H G+I+YTIGQRRGLGVA G+PLFVV +D + RVIVGPRE+L + Sbjct: 244 IVHLDGRVLGKHEGVIHYTIGQRRGLGVATGDPLFVVKIDAPARRVIVGPREALMTRGLL 303 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 L E+NWLG G E+A G + +++RS++ PVP + D V F+ E GVA GQA Sbjct: 304 LEELNWLGQGSLEEAATHGARVLIRVRSTRPPVPGRLGYEDGVPAVFFDAPEEGVARGQA 363 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSD 390 V Y + R+LGGG I+ +D Sbjct: 364 AVLYDLE-GSTRILGGGFIARPLPAD 388 >gi|293390912|ref|ZP_06635246.1| tRNA-specific 2-thiouridylase mnmA [Aggregatibacter actinomycetemcomitans D7S-1] gi|290951446|gb|EFE01565.1| tRNA-specific 2-thiouridylase mnmA [Aggregatibacter actinomycetemcomitans D7S-1] Length = 383 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 125/389 (32%), Positives = 207/389 (53%), Gaps = 29/389 (7%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 +L + L +N +++ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 11 PKLTAQQLAENAT-KKIICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 66 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C A D+ DA+ VCD + + + ++ + + V F S Y AG TP P + CN+ +KF Sbjct: 67 CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKF 126 Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 L LGA+ +ATGHY+R R + + R +D +DQSYFL+ ++ Q+ Sbjct: 127 KAFLEYAAEDLGANYIATGHYVRRRGADDN-----AQLLRGLDNNKDQSYFLYTLSKIQV 181 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+G+++K VR +A E+GL A K DS ICF+ + K+ D + R A G+I Sbjct: 182 GQSLFPVGNIEKPIVRAIAEELGLVTAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 239 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297 ++G+I+GRH+G++ +T+GQR+GLG+ + +VV D ++ +IV + Sbjct: 240 RTVDGEIIGRHDGLMYHTLGQRKGLGIGGVKGAGEDAWYVVEKDLINNELIVAQGHEHSA 299 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356 L + ++++W+ + +C VK R Q VP ++ DD + V F++ + Sbjct: 300 LLSTGLIAQQLHWVD----RLPIRAPLRCTVKTRYRQTDVPCTIEPIDDETIKVIFDEPQ 355 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIISG 385 + V GQ+ VFY + LGGGII Sbjct: 356 IAVTPGQSAVFYLDEI----CLGGGIIEK 380 >gi|167036708|ref|YP_001664286.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115132|ref|YP_004185291.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855542|gb|ABY93950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928223|gb|ADV78908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 376 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 140/374 (37%), Positives = 211/374 (56%), Gaps = 14/374 (3%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYD 75 K+ RVVV MSGGVDSSV A LLK G+DVIGVT+Q++ + +G CC+ V D Sbjct: 14 KKNNRVVVGMSGGVDSSVSAYLLKEQGFDVIGVTMQIWQDKDEEAVRVEGGCCSLSAVND 73 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 ARRV + I + +YV ++++ F+ VI F Y G TP PC+ CN+ +KF +LL Sbjct: 74 ARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLKGRTPNPCIACNKYIKFEELLKRAWM 133 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 + A +ATGHY D+ + R ++ + +D +DQ+Y L+ TQ QL + FPLG Sbjct: 134 IDAYYVATGHYAIKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKY 190 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 KK+ VR+LA+ +GL +A K DSQ+ICFV Y ++ G+ G+ LG Sbjct: 191 KKDEVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGY 250 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H GII+YTIGQR+GLG+++G+PL+VV +D ++ V++G + + + N++ Sbjct: 251 HKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVFGDELISYNNNFISI-- 308 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374 D + + KIR + ++ +DG V+V F+ + + GQ+ VFY D Sbjct: 309 --DKLEREMRVKAKIRYNAKEQDAVIRPLEDGKVFVKFDNPQRAITPGQSVVFYEGDI-- 364 Query: 375 ARVLGGGIISGSKR 388 V+GGG I R Sbjct: 365 --VVGGGTIERKVR 376 >gi|167040124|ref|YP_001663109.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter sp. X514] gi|166854364|gb|ABY92773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter sp. X514] Length = 387 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 139/369 (37%), Positives = 211/369 (57%), Gaps = 14/369 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDAR 77 + RV + MSGGVDSSV A LLK+ G+DVIG+T++++ +A SCC+ + DA+ Sbjct: 27 NNRVAIGMSGGVDSSVAAYLLKKQGFDVIGLTMRVWVDHEAKAFDSDKSCCSLKATQDAK 86 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 +V + + + HY D + F + ++ F + Y G TP PCV CNR +KF +LL +LG Sbjct: 87 KVAEILGIPHYTVDLSKIFYDKIVNYFVNEYLKGRTPNPCVLCNRQIKFGELLEKAFELG 146 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A +ATGHY+R D+ +R ++ + +D +DQSY L+ TQ+QL FPLG+ KK Sbjct: 147 AYYIATGHYVRKEY---DEKTKRYLLKKGIDSSKDQSYVLYRLTQKQLEHALFPLGNYKK 203 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 E +R LA E+ L +A K +SQ+ICF+ Y ++KR G+ ++G+ LG H Sbjct: 204 EEIRALAEELKLPVAKKPESQEICFIPDNDYSGLIKRQVKDEIKPGEFRDVHGKFLGYHK 263 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GII+YTIGQRRGLG++ PL+VV +D ++ V+VG +E + + N++ Sbjct: 264 GIIHYTIGQRRGLGLSSDRPLYVVDIDVKNNVVVVGHQEDVWGEELISSNNNFISI---- 319 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + K KIR + ++ +D V V F K + + GQ+ VFY D Sbjct: 320 EKLEKEMKVTAKIRYTAKEEEAIIKPYEEDKVLVKFLKPQRAITPGQSVVFYDKDV---- 375 Query: 377 VLGGGIISG 385 V+GGGII Sbjct: 376 VVGGGIIER 384 >gi|227486632|ref|ZP_03916948.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaerococcus lactolyticus ATCC 51172] gi|227235344|gb|EEI85359.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaerococcus lactolyticus ATCC 51172] Length = 367 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 135/380 (35%), Positives = 202/380 (53%), Gaps = 24/380 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + KD++V+V +SGGVDSSV A LLK +GYDV G+ ++ ++ + G C A +D DA Sbjct: 3 DKKDIKVIVGISGGVDSSVAALLLKEEGYDVTGIFMKNWDD---TDENGFCTAEEDFEDA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 VC+ I + +Y ++E+ + + V F Y G TP P + CN+ +KF L + L Sbjct: 60 VAVCNQIGIPYYSINFEKEYYDRVFSYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAKNL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD LATGHY R D M R +D +DQ+YFL +Q+Q+ D+ FP+GD++ Sbjct: 120 GADYLATGHYARV-----DRTDGETKMLRGLDNNKDQTYFLSQLSQEQIKDVLFPVGDLQ 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A++ GL A+K DS ICF+ + + + + A G+IV G I+G+H Sbjct: 175 KSEVREIAKKAGLATANKKDSTGICFIGERDFNEFLSHYLP--AQPGNIVDTEGHIMGKH 232 Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +G++ +TIGQRRGLG+ GE FV D + ++V L +++Y E + + Sbjct: 233 DGLMYHTIGQRRGLGIGGEGEAWFVYGKDLEKNELLVCQGKNNPLLFSNKLYGSEFSTIS 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 D F C K R Q + V+ DG V V ++K+ V GQA VFY + Sbjct: 293 D----KECPKEFDCTAKFRYRQADIKAHVKVLGDGKVEVTYDKT-KAVTPGQAAVFYDGE 347 Query: 372 SNEARVLGGGIISGSKRSDA 391 LG II D Sbjct: 348 V----CLGSAIIDEVYMDDR 363 >gi|167626941|ref|YP_001677441.1| tRNA-specific 2-thiouridylase MnmA [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189040504|sp|B0TW32|MNMA_FRAP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|167596942|gb|ABZ86940.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 359 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 132/374 (35%), Positives = 206/374 (55%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +++V +SGGVDSSV A LLK+ GYDV GV ++ + + C A Q + DA+ Sbjct: 2 QNNKIIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQHIADAQA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F + Y AG TP P + CN+ +KF LS LG Sbjct: 59 VCDSIGIPFKKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R+++ DDG + + + +D +DQ+YFL+ Q+QL FP+GD++K Sbjct: 119 DYIATGHYARTKVI--DDGSVQ--LVKGLDDSKDQTYFLYTLGQEQLKQTMFPIGDIEKS 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ D + + A +G+I NG +G H+G Sbjct: 175 RVREIAKENNLVTFDKKDSTGICFIGERKFKDFLSKFLP--AQKGEIHDENGIKIGMHDG 232 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310 ++ YTIGQR+GLG+ + P F D ++ + + G L + +++W Sbjct: 233 LMYYTIGQRQGLGIGGVKNRPEIPWFAAQKDLENNVLIAVQGHDHPMLFKDTLQAIDLSW 292 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + A D F+C K+R Q P V+ N+DG V V F++ + + GQ+ VFY Sbjct: 293 VAGS----APADSFRCSAKVRYRQKDQPCSVEVNNDGSVNVVFDEPQRAITPGQSVVFYD 348 Query: 370 SDSNEARVLGGGII 383 +D LGGGII Sbjct: 349 NDV----CLGGGII 358 >gi|145631293|ref|ZP_01787065.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae R3021] gi|144983078|gb|EDJ90578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae R3021] Length = 362 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 122/376 (32%), Positives = 203/376 (53%), Gaps = 28/376 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + +V+ MSGGVDSSV A +L++ GY V G+ ++ + + C A D+ DA+ Sbjct: 2 RQKKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---YCTAAADLADAQA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLG 137 VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L LG Sbjct: 59 VCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLG 118 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A +ATGHY+R GDD + + R +D +DQSYFL+ + +Q+ FP+G++KK Sbjct: 119 AHYIATGHYVRRA---GDDENAK--LLRGLDANKDQSYFLYTLSHKQVGQSLFPVGEIKK 173 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR +A ++GL A K DS ICF+ + K+ D + R A G+I ++ +I+GRH+ Sbjct: 174 PIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDDEIIGRHD 231 Query: 258 GIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G++ +T+GQR+GLG+ E +VV D ++ +IV L + +++ Sbjct: 232 GLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPRLFSRGLIASQLH 291 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 W+ + + + +C VK R Q +P ++ +D+ + V F++ + V GQ+ VFY Sbjct: 292 WVD----REPIRESLRCTVKTRYRQQDIPCVIESIDDETIRVIFDEPQSAVTPGQSAVFY 347 Query: 369 TSDSNEARVLGGGIIS 384 + LGGGII+ Sbjct: 348 LGEV----CLGGGIIA 359 >gi|227889771|ref|ZP_04007576.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus johnsonii ATCC 33200] gi|227849635|gb|EEJ59721.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus johnsonii ATCC 33200] Length = 383 Score = 478 bits (1230), Expect = e-132, Method: Composition-based stats. Identities = 129/384 (33%), Positives = 192/384 (50%), Gaps = 25/384 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK+ G+DV+GV ++ ++ + G C A +D D Sbjct: 11 DNSKIRVVVGMSGGVDSSVSALLLKQQGFDVVGVFMKNWDD---TDDSGVCTATEDYEDV 67 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++V D I + +Y ++E+ + + V F Y G TP P V CN+ +KF L L Sbjct: 68 KKVADEIGIPYYSINFEKDYWDRVFEYFLDEYKKGRTPNPDVMCNKEIKFKSFLDFAMDL 127 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY +R+ D M RP D +DQ+YFL +Q QL + FPL ++ Sbjct: 128 DADYIAMGHYAATRV----DDNGVVHMMRPKDGNKDQTYFLNQLSQDQLKKVIFPLANLT 183 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + A G +V +G+++G H Sbjct: 184 KPQVREIAIASGLATAKKKDSTGICFIGERNFRKFLSEFLP--AQSGKMVTPDGKVVGEH 241 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309 G++ YTIGQR GLG+ + P FVV D + +IV L + ++ Sbjct: 242 AGLMYYTIGQRSGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYATSLDASGVS 301 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACVF 367 + D KC K R Q V V + D+ V+V+F++ V GQA VF Sbjct: 302 FFTGQPDHD---VDLKCTAKFRYRQPDVGVTMHYRAKDNTVHVEFDEPARAVTPGQAIVF 358 Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391 Y + LGG I + +++ Sbjct: 359 YNGE----ECLGGATIDRAYQNEK 378 >gi|220935011|ref|YP_002513910.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thioalkalivibrio sp. HL-EbGR7] gi|219996321|gb|ACL72923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thioalkalivibrio sp. HL-EbGR7] Length = 364 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 132/371 (35%), Positives = 199/371 (53%), Gaps = 27/371 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++V MSGGVDSSV A LL + GY V G+ ++ + G C A +D+ DA+ VC+ Sbjct: 6 HIIVGMSGGVDSSVAALLLIQAGYRVEGLFMKNWEEDD---EPGYCAAAEDLADAKAVCE 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + ++ + + V F Y AG TP P + CN+ +KF L RQLGAD + Sbjct: 63 VLEIPLHKVNFSADYWHRVFSHFLDEYQAGRTPNPDILCNKEIKFRAFLDYARQLGADGI 122 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R +G DG+ + D +DQ+YFL+ Q+QL FP+G+++K VR Sbjct: 123 ATGHYAR----IGRDGES-YTLLAGRDANKDQTYFLYTLGQEQLSKSLFPIGELEKPRVR 177 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 DLAR GL + K DS ICF+ + ++ D ++ A G+IV G LG H G++ Sbjct: 178 DLARAHGLPVFAKKDSTGICFIGERRFRDFLQTYLP--ARPGEIVDPEGNRLGEHQGLMY 235 Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YT+GQR+GLG+ P +VV D +R+IV + + ++++W+ Sbjct: 236 YTLGQRQGLGIGGVHDAGEAPWYVVDKDMAHNRLIVAQGHDHPLMHHRGLEAQDLHWVSG 295 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 +A + F C +IR Q V+ + DG V V F++++ +A GQ+ VFY D Sbjct: 296 ----EAPREAFSCRARIRHRQPLQACRVEPHADGRVRVLFDEAQRAIAPGQSVVFYQED- 350 Query: 373 NEARVLGGGII 383 R LGGGII Sbjct: 351 ---RCLGGGII 358 >gi|187930035|ref|YP_001900522.1| tRNA-specific 2-thiouridylase MnmA [Ralstonia pickettii 12J] gi|229486417|sp|B2UC85|MNMA_RALPJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|187726925|gb|ACD28090.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia pickettii 12J] Length = 370 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 130/380 (34%), Positives = 187/380 (49%), Gaps = 27/380 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 R+VV MSGGVDSSV A LLK+ GYDV+G+ ++ + S+ C QD D Sbjct: 2 SKKRIVVGMSGGVDSSVTAWLLKQQGYDVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I V ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADLIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R G R + + D +DQSYFL Q QL FPLG+M K Sbjct: 119 DTIATGHYARVREVDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEMPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A E+GL A K DS ICF+ + + D + R G I +G+ +G H G Sbjct: 174 KVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPIKTPDGKTIGEHIG 231 Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT+GQR+G+G+ G+ +V D ++ + V L H ++ +++W Sbjct: 232 LAFYTLGQRKGIGIGGSRDGTGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + A +G K R Q P V R G + + F +++ V GQ+ V Y Sbjct: 292 VAGH----APAEGTHLGAKTRYRQADAPCTVARAAGGALTLTFSEAQWAVTPGQSAVLYD 347 Query: 370 SDSNEARVLGGGIISGSKRS 389 + LGGGIIS ++ + Sbjct: 348 GEV----CLGGGIISAAEPA 363 >gi|307545655|ref|YP_003898134.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase [Halomonas elongata DSM 2581] gi|307217679|emb|CBV42949.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Halomonas elongata DSM 2581] Length = 370 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 121/387 (31%), Positives = 189/387 (48%), Gaps = 27/387 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + + +V+V MSGGVDSSV A LL G+DV G+ ++ ++ ++ C A +D+ DA Sbjct: 2 SASNGKVIVGMSGGVDSSVSAQLLLEQGFDVEGLFMKNWDEDDGTE---YCTAKEDLADA 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 VC + + + ++ + + V F + Y AG TP P + CNR +KF L L Sbjct: 59 EAVCAKLGIHLHTANFAAEYWDNVFEHFLAEYQAGRTPNPDILCNREIKFKVFLEYAEML 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY+R G + + +D +DQSYFL A + + FP+G+++ Sbjct: 119 GADWIATGHYVRRAERDG-----HARLLKGLDANKDQSYFLHAVPEAAIARSLFPVGELE 173 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VRD+A GL A K DS ICF+ + ++ D +++ A G I +G ++G H Sbjct: 174 KSEVRDIAERHGLATARKKDSTGICFIGERRFRDFLRQYLP--AQPGTIATPDGDVIGEH 231 Query: 257 NGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSS--RVIVG-PRESLEVHRIYLREI 308 G++ YT+GQR+GLG+ P +V D + V+ G L + + Sbjct: 232 MGLMYYTLGQRQGLGIGGLANYSDAPWYVAGKDLERNVLTVVQGKHHPLLYTDSLATEAM 291 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVF 367 +W+ + K R QD VP ++ DDGV V F+ + V GQ+ V Sbjct: 292 DWVAGT----PPAREGRYHAKTRYRQDDVPCTMRVAEDDGVEVHFDDPQRAVTPGQSLVL 347 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEE 394 Y D LGGG+I + + Sbjct: 348 YDGDI----CLGGGVIRATWNATEAAA 370 >gi|89094503|ref|ZP_01167442.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oceanospirillum sp. MED92] gi|89081239|gb|EAR60472.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oceanospirillum sp. MED92] Length = 371 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 119/384 (30%), Positives = 196/384 (51%), Gaps = 27/384 (7%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 + + +V+V MSGGVDSSV A LL + GY V G+ ++ ++ ++ C A +D+ Sbjct: 6 NTDNSSAKVIVGMSGGVDSSVSALLLMQQGYQVEGLFMKNWDEDDGTE---YCTAKEDLA 62 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ VCD + + + ++ + + V F Y AG TP P + CNR +KF L Sbjct: 63 DAQAVCDKLGIHLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLEYAV 122 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 +LGAD +ATGHY+R D + + + +D +DQSYFL Q ++ FP+G+ Sbjct: 123 ELGADFIATGHYVRRG-----DRDGKTRLLKGLDNNKDQSYFLHQVGQLEIEKTLFPVGE 177 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K +VR LA E L +K DS ICF+ + ++ D +K+ A G I NG ++G Sbjct: 178 LEKPAVRKLAEEHDLVTHNKKDSTGICFIGERRFSDFLKQYLP--AQPGKIETPNGDVIG 235 Query: 255 RHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRV--IVG-PRESLEVHRIYLR 306 H G++ YTIGQR+GL + EP FV D + + + + G + L + Sbjct: 236 EHAGLMYYTIGQRQGLQIGGLKDYPEEPWFVGAKDLDRNVLIAVQGKQNDLLFTDWLTAD 295 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQAC 365 E+ W+ + ++C K+R Q ++R+ + G + F + + + GQ+ Sbjct: 296 ELFWING----EEPQLPYQCTAKVRYRQSDQGCIIERHGESGYRIVFNEPQRAITPGQSV 351 Query: 366 VFYTSDSNEARVLGGGIISGSKRS 389 V Y D LGGG+I + ++ Sbjct: 352 VIYQDDI----CLGGGVIEHTGKN 371 >gi|88703376|ref|ZP_01101092.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Congregibacter litoralis KT71] gi|88702090|gb|EAQ99193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Congregibacter litoralis KT71] Length = 372 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 120/379 (31%), Positives = 186/379 (49%), Gaps = 27/379 (7%) Query: 14 LDKNPKDM-RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72 + K+ +V+V MSGGVDSSV A +L GYDV G+ ++ ++ ++ C A D Sbjct: 1 MTAPAKNTEKVIVGMSGGVDSSVAALILLEQGYDVEGLFMKNWDEDDGTE---YCTAKVD 57 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DA+ V D + ++ + ++ + + V F Y AG TP P + CNR +KF L Sbjct: 58 YADAQAVADKLGITLHAANFAAEYWDNVFEHFLDEYRAGRTPNPDILCNREIKFRAFLDY 117 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 +LGAD +ATGHY R + G R +C+ +D +DQSYFL A +L FPL Sbjct: 118 ALELGADRIATGHYARRGMRHG-----RPALCKGLDNNKDQSYFLHAVGHAELSKTLFPL 172 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR LA GL DK DS ICF+ + ++ D +++ A G I L G Sbjct: 173 GEIEKPEVRALAERAGLRTHDKKDSTGICFIGERRFKDFLQQYLP--AQPGIIKTLEGDT 230 Query: 253 LGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSR--VIVG-PRESLEVHRIY 304 +G H+G++ +TIGQR+GLG+ P +V D ++ V+ G +L ++ Sbjct: 231 IGEHSGLMYHTIGQRQGLGIGGLARHNEAPWYVAGKDLANNVLLVVQGNDHPALFSQELW 290 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 + W+ A C K+R Q V + ++F + + GQ+ Sbjct: 291 TDTLFWIAG----QAPQFPLHCAAKVRYRQADQKCTVFEDGGRYRINFSAPQRAITPGQS 346 Query: 365 CVFYTSDSNEARVLGGGII 383 V Y + LGGG+I Sbjct: 347 VVLYDGNI----CLGGGVI 361 >gi|262376077|ref|ZP_06069308.1| tRNA methyl transferase [Acinetobacter lwoffii SH145] gi|262309171|gb|EEY90303.1| tRNA methyl transferase [Acinetobacter lwoffii SH145] Length = 379 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 125/379 (32%), Positives = 200/379 (52%), Gaps = 23/379 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ V Sbjct: 2 QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAV 58 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD I + + ++ + + V F + YAAG TP P + CN+ +KF L LGAD Sbjct: 59 CDKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAVNLGAD 118 Query: 140 VLATGHYIRS-RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R G+ + R +D +DQ+YFL A +++ FP+G+++K Sbjct: 119 FIATGHYCRRGETMTNSRGEEYAPLLRGVDNNKDQTYFLHAVHGREINKTLFPVGEIEKP 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E+ L A K DS ICF+ + ++ D +K+ A G IV +G+ +G H+G Sbjct: 179 QVRKIAEELDLVTAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLEDGKEVGDHHG 236 Query: 259 IINYTIGQR-----RGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 ++ YT+GQR G+ FV++ D +R++VG ++ ++ I+W Sbjct: 237 LMYYTLGQRGGIGIGGMKGVAEGAWFVLHKDIEGNRLVVGQGHEHPLMQSTTLWSEAIDW 296 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN---DDGVYVDFEKSEVGVASGQACVF 367 + +D GF+C K R Q V ++ +GV V+F++ + V GQ+ VF Sbjct: 297 VAGE--QDIPETGFRCTAKTRYRQTDQACTVYQDSESPNGVRVEFDEPQRAVTPGQSVVF 354 Query: 368 YTSDSNEARVLGGGIISGS 386 Y+ + LGGG+I + Sbjct: 355 YSGEV----CLGGGVIHHT 369 >gi|28211134|ref|NP_782078.1| tRNA-specific 2-thiouridylase MnmA [Clostridium tetani E88] gi|75542384|sp|Q894S7|MNMA2_CLOTE RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|28203574|gb|AAO36015.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Clostridium tetani E88] Length = 358 Score = 477 bits (1229), Expect = e-132, Method: Composition-based stats. Identities = 135/367 (36%), Positives = 209/367 (56%), Gaps = 15/367 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARR 78 +V+V MSGGVDSSV A LLK GY+VIG T+Q++ K +R+G CC+ V DARR Sbjct: 5 KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGATMQIWQDDKEFIEREGGCCSLSAVADARR 64 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + I + YV ++++ F+ VI F Y G TP PCV CN+ +KFS L LG Sbjct: 65 VANKIGIPFYVMNFKDAFKKNVIDYFVDEYMEGRTPNPCVACNKFIKFSSFLDKAMTLGI 124 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + + R I+ + D ++DQ+Y L+ TQ QL P G KK Sbjct: 125 DYVATGHYA-----IIEKQNNRYIVRKSEDDKKDQTYALYNLTQFQLERTLMPCGRYKKS 179 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A+++GL + +K DSQ+ICF+ + +K +G+ V +G +LG H G Sbjct: 180 EIREIAKKIGLRVHNKKDSQEICFIPDNDHGKYIKNRFPSKVRQGNFVDKSGNVLGTHKG 239 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I+ YTIGQR+GL +A+G+P++VV ++ + V++G + L + +++N++ D Sbjct: 240 IVYYTIGQRKGLDIALGKPMYVVDINPFRNEVVLGNLDDLLNTELIAKDVNYI----PFD 295 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + + KIR SQ P + +D V V+F + + + GQ+ VFY D + Sbjct: 296 NLKEPMEVEAKIRYSQIPSKAVITPMENDKVKVNFTEKQRAITKGQSVVFYKGD----LL 351 Query: 378 LGGGIIS 384 +GGGII Sbjct: 352 IGGGIIE 358 >gi|260102614|ref|ZP_05752851.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus helveticus DSM 20075] gi|260083568|gb|EEW67688.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus helveticus DSM 20075] gi|328468659|gb|EGF39653.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus helveticus MTCC 5463] Length = 375 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 130/384 (33%), Positives = 189/384 (49%), Gaps = 25/384 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TDDSGVCTATEDYEDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++V D I + +Y ++E+ + + V F + Y G TP P V CN +KF L L Sbjct: 60 KKVADKIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLDFAMDL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY ++ D M RP D +DQ+YFL Q Q+ + FPL ++ Sbjct: 120 DADYIAMGHYAKTVK----DADGLTHMMRPKDGNKDQTYFLSQLNQDQIKKVIFPLANLT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + A G +V +G+++G H Sbjct: 176 KPQVREIALANGLATAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGKVVGEH 233 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309 G++ YTIGQR+GLG+ + P FVV D + +IV L R+ +++ Sbjct: 234 AGLMYYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYASRLKASDMS 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367 + D F C K R Q V V V +D+ V F++ V GQA V Sbjct: 294 FFTGKPDHD---VEFHCSAKFRYRQCDVGVTVKYHADDNTADVYFDEPARAVTPGQALVL 350 Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391 Y + LGGG I + + D Sbjct: 351 YQGE----ECLGGGNIDAAYQEDK 370 >gi|312869501|ref|ZP_07729656.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus oris PB013-T2-3] gi|311094948|gb|EFQ53237.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus oris PB013-T2-3] Length = 377 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 136/386 (35%), Positives = 198/386 (51%), Gaps = 25/386 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RVVV MSGGVDSSV A LLKR GYDVIGV ++ ++ + G C A +D D +V Sbjct: 7 TRVVVGMSGGVDSSVTALLLKRQGYDVIGVFMKNWDD---TDENGVCTATEDYKDVAKVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 I + +Y ++E+ + + V F + Y G TP P V CN+ +KF + QLGAD Sbjct: 64 AKIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQLGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + D R + R D +DQ+YFL QL + FPL + K + Sbjct: 124 VATGHYADLKR----DADGRMHLMRAADQHKDQTYFLSQLDYHQLDKVLFPLANYTKPQI 179 Query: 201 RDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R++A+E GL A+K DS ICF+ + G + + + + A G++ ++G+++G+H G+ Sbjct: 180 REIAKEAGLATAEKKDSVGICFIGEDGHFREFLSQYIP--AQPGNMETVDGKVVGQHMGL 237 Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLG 312 + YTIGQRRGLG+ EP FV+ D + + VG E L + +I+W+ Sbjct: 238 MYYTIGQRRGLGLGGNKESNEPWFVIGKDIEKNVLYVGQGYHNEHLYATHLEASDIHWVD 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTS 370 D + F C K R Q V V V+ DD V V F+ + GQA VFY Sbjct: 298 DVVSRYG--REFHCTAKFRYRQKDVGVTVRIADDDQMVTVTFDDPARAITPGQAVVFYDG 355 Query: 371 DSNEARVLGGGIISGSKRSDAVEESL 396 LG II + +D + + Sbjct: 356 ----QECLGSAIIDRAYNADRQLQYV 377 >gi|319775956|ref|YP_004138444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae F3047] gi|317450547|emb|CBY86764.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae F3047] Length = 418 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 125/388 (32%), Positives = 203/388 (52%), Gaps = 29/388 (7%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 +L L N +V+ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 47 PQLTQEQLASNAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 102 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 103 CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 162 Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 L LGAD +ATGHY+R GDD + + R +D +DQSYFL+ + +Q+ Sbjct: 163 KAFLEYAAEDLGADYIATGHYVRRA---GDDENAK--LLRGLDANKDQSYFLYTLSHKQV 217 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+G ++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 218 GQSLFPVGKIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 275 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297 ++ +I+GRH+G++ +T+GQR+GLG+ E +VV D ++ +IV Sbjct: 276 RTVDNEIIGRHDGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVKNNELIVAQGHDHPR 335 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356 L + +++W+ + + +C VK R Q + ++ DD + V F++ + Sbjct: 336 LFSKGLIASQLHWVD----RQPIRELLRCTVKTRYRQQDISCAIEPIDDETIRVIFDEPQ 391 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGGII+ Sbjct: 392 SAVTPGQSAVFYLGEV----CLGGGIIA 415 >gi|331082285|ref|ZP_08331411.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium 6_1_63FAA] gi|330400771|gb|EGG80372.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae bacterium 6_1_63FAA] Length = 361 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 139/368 (37%), Positives = 204/368 (55%), Gaps = 15/368 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDA 76 +VVV +SGGVDSSV A LLK+ GYDVIGVT+Q++ + G CC V DA Sbjct: 2 SGKKVVVGLSGGVDSSVAAYLLKKQGYDVIGVTMQIWQEEDNEFQEENGGCCGLSAVDDA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV +++ +YV ++ + F+ VI F Y G TP PC+ CNR VK+ LL + + Sbjct: 62 RRVAQILDIPYYVMNFRKEFKEKVIDYFNQEYLEGRTPNPCIACNRYVKWESLLKRSLDI 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R R + + ++DQ+Y L+ TQ+QL P+G+ Sbjct: 122 GADYIATGHYARVEQLP----NGRYAIRNSVTAKKDQTYALYNLTQEQLSRTLMPVGEYT 177 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 KE +R +A+E GL +A K DSQ+ICFV Y ++ EG+ V +G ++G+H Sbjct: 178 KEEIRRIAQEAGLPVAHKKDSQEICFVPDNDYAGFIEESTGKKLEEGNYVLEDGTVIGKH 237 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GII+YTIGQR+GL ++MG P+FV + +++ V++G E L V + +N++ Sbjct: 238 KGIIHYTIGQRKGLNLSMGHPVFVTEIRPDTNEVVIGENEDLFVTDLICDRVNFMAIDHL 297 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375 E +G + KIR + ++ +G V V F + + V GQA VFY + Sbjct: 298 E----EGKEFTAKIRYNHPGAVCTLEDLGEGKVKVLFREPQRAVTPGQAVVFYDGE---- 349 Query: 376 RVLGGGII 383 V GGGII Sbjct: 350 YVAGGGII 357 >gi|301154862|emb|CBW14325.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus parainfluenzae T3T1] Length = 382 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 127/388 (32%), Positives = 208/388 (53%), Gaps = 29/388 (7%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 +L++ L +N +V+ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 11 PKLSAEQLAENAT-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 66 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 67 CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKF 126 Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 L LGA+ +ATGHY+R R + + R +D +DQSYFL+ ++ Q+ Sbjct: 127 KAFLEYAAEDLGANYIATGHYVRRRG-----ADNQAELLRGLDSNKDQSYFLYTLSKHQV 181 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R A GDI Sbjct: 182 GQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGDI 239 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297 ++G+I+GRH G++ +T+GQR+GLG+ E +VV D ++ +IV Sbjct: 240 RTVDGEIIGRHEGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPR 299 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSE 356 L + ++++W+ + V + F+C VK R Q + V+ +DD + V F++ + Sbjct: 300 LFSKGLIAKQLHWVN----REPVREAFRCTVKTRYRQTDIACLVEPIDDDCIRVIFDEPQ 355 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ VFY + LGGGII Sbjct: 356 AAVTPGQSAVFYLDEV----CLGGGIIE 379 >gi|256850945|ref|ZP_05556334.1| tRNA methyl transferase [Lactobacillus jensenii 27-2-CHN] gi|260661159|ref|ZP_05862073.1| tRNA methyl transferase [Lactobacillus jensenii 115-3-CHN] gi|282934142|ref|ZP_06339420.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus jensenii 208-1] gi|256616007|gb|EEU21195.1| tRNA methyl transferase [Lactobacillus jensenii 27-2-CHN] gi|260548096|gb|EEX24072.1| tRNA methyl transferase [Lactobacillus jensenii 115-3-CHN] gi|281301756|gb|EFA94022.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus jensenii 208-1] Length = 375 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 132/393 (33%), Positives = 190/393 (48%), Gaps = 29/393 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSKIRVVVGMSGGVDSSVSALLLKEAGYDVVGVFMKNWDD---TDDAGVCTATEDYEDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +RV D I + +Y ++E+ + V F S Y G TP P + CN +KF L L Sbjct: 60 KRVADKIGIPYYSINFEKEYWQRVFEYFLSEYKKGRTPNPDIMCNTEIKFKSFLEFAMSL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY ++ D M RP D +DQ+YFL +Q+Q+ + FPL ++ Sbjct: 120 DADYIAMGHYAKTVK----DKNGVTHMMRPKDGNKDQTYFLSQLSQEQIKHVIFPLANLT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + A G +V +G ++G H Sbjct: 176 KPQVREIAERAGLATAKKKDSTGICFIGERNFKKFLSEFLP--AKPGKMVTPDGNVVGNH 233 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 +G++ YTIGQR+GLG+ + P FVV D + +IV L + ++ Sbjct: 234 SGLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLKKNELIVEQGYDSPRLYATSLKASGMS 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367 + D F C K R Q V V V D V F++ V GQA V Sbjct: 294 FYTGNPDHD---VEFDCTAKFRYRQADVAVHVKYHAADKTCDVYFDEPARAVTPGQALVL 350 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 Y + LGGG I + + EE L ++ Sbjct: 351 YKGE----ECLGGGNIDAAYQ----EEKQLQLV 375 >gi|161507327|ref|YP_001577281.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus helveticus DPC 4571] gi|205816860|sp|A8YUQ2|MNMA_LACH4 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|160348316|gb|ABX26990.1| tRNA-methyltransferase [Lactobacillus helveticus DPC 4571] Length = 375 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 130/384 (33%), Positives = 189/384 (49%), Gaps = 25/384 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TDDSGVCTATEDYEDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++V D I + +Y ++E+ + + V F + Y G TP P V CN +KF L L Sbjct: 60 KKVADKIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLDFAMDL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY ++ D M RP D +DQ+YFL Q Q+ + FPL ++ Sbjct: 120 DADYIAMGHYAKTVK----DADGLTHMMRPKDGNKDQTYFLSQLNQDQIKKVIFPLANLT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + A G +V +G+++G H Sbjct: 176 KPQVREIALANGLATAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGKVVGEH 233 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309 G++ YTIGQR+GLG+ + P FVV D + +IV L R+ +++ Sbjct: 234 AGLMYYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYASRLKASDMS 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367 + D F C K R Q V V V +D+ V F++ V GQA V Sbjct: 294 FFTGKPDHD---VEFHCSAKFRYRQCDVGVTVKYHADDNTADVYFDEPARAVTPGQALVL 350 Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391 Y + LGGG I + + D Sbjct: 351 YQGE----ECLGGGNIDAAYQEDK 370 >gi|205815324|sp|B0KC14|MNMA1_THEP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 Length = 364 Score = 476 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 140/374 (37%), Positives = 211/374 (56%), Gaps = 14/374 (3%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYD 75 K+ RVVV MSGGVDSSV A LLK G+DVIGVT+Q++ + +G CC+ V D Sbjct: 2 KKNNRVVVGMSGGVDSSVSAYLLKEQGFDVIGVTMQIWQDKDEEAVRVEGGCCSLSAVND 61 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 ARRV + I + +YV ++++ F+ VI F Y G TP PC+ CN+ +KF +LL Sbjct: 62 ARRVANKIGIKYYVMNFKDVFKEKVIDYFVDEYLKGRTPNPCIACNKYIKFEELLKRAWM 121 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 + A +ATGHY D+ + R ++ + +D +DQ+Y L+ TQ QL + FPLG Sbjct: 122 IDAYYVATGHYAIKEY---DEERGRYLLKKSVDTSKDQTYVLYNLTQTQLEHILFPLGKY 178 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 KK+ VR+LA+ +GL +A K DSQ+ICFV Y ++ G+ G+ LG Sbjct: 179 KKDEVRELAKNLGLPVASKPDSQEICFVTDNDYGKFIRENAKEEIKPGEFRDTRGRFLGY 238 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H GII+YTIGQR+GLG+++G+PL+VV +D ++ V++G + + + N++ Sbjct: 239 HKGIIHYTIGQRKGLGISVGKPLYVVDIDAENNVVVLGYGDEVFGDELISYNNNFISI-- 296 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374 D + + KIR + ++ +DG V+V F+ + + GQ+ VFY D Sbjct: 297 --DKLEREMRVKAKIRYNAKEQDAVIRPLEDGKVFVKFDNPQRAITPGQSVVFYEGDI-- 352 Query: 375 ARVLGGGIISGSKR 388 V+GGG I R Sbjct: 353 --VVGGGTIERKVR 364 >gi|205822346|sp|B1ZGZ6|MNMA_METPB RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 385 Score = 476 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 205/377 (54%), Positives = 269/377 (71%), Gaps = 8/377 (2%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSLDL K P + RVVVAMSGGVDSSVVA LLKR+GYDV+GVTLQLY+ A+ RKG+CC Sbjct: 1 MNSLDLPKPPHETRVVVAMSGGVDSSVVAGLLKREGYDVVGVTLQLYDHGAATHRKGACC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AG+D++DAR V +T+ + HYV DYE+RFR +VI FA SY +GETP+PCV+CNR+VKF D Sbjct: 61 AGRDIHDARAVAETLGIPHYVLDYEDRFRESVIDRFAESYLSGETPIPCVECNRSVKFRD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL + R LGA+ LATGHY+ SR + R + R +D RDQSYFL+ATT +QL L Sbjct: 121 LLGMARDLGAEALATGHYVASRAQP----EGGRALYRALDPARDQSYFLYATTPEQLAFL 176 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG+ K+ R LARE+GL +ADK+DSQDICFV QG Y DV+ ++ A G+IV L Sbjct: 177 RFPLGERPKDETRALARELGLAVADKADSQDICFVPQGGYADVIAKLRPEAARPGEIVDL 236 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G+ LG H GII+YT+GQRRGL +++GEPL+VV L+ ++RV+VGPR +L RI L ++ Sbjct: 237 DGRRLGEHEGIIHYTVGQRRGLKLSVGEPLYVVRLEPETARVVVGPRAALATRRIRLTDL 296 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACV 366 NWLG + + V++RS+++P P + N + + V+ E GV+ GQACV Sbjct: 297 NWLGSRAPDG--LADLPVAVRVRSTREPRPARLSWNAAEACLEVELVVPEDGVSPGQACV 354 Query: 367 FYTSDSNEARVLGGGII 383 Y D A+VLGGG I Sbjct: 355 IYADDGPRAQVLGGGTI 371 >gi|255283411|ref|ZP_05347966.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bryantella formatexigens DSM 14469] gi|255266059|gb|EET59264.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bryantella formatexigens DSM 14469] Length = 357 Score = 476 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 139/367 (37%), Positives = 203/367 (55%), Gaps = 15/367 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDAR 77 +VVV MSGGVDSSV A LLK GYDV+GVT+Q++ + + G CC V DAR Sbjct: 2 KKKVVVGMSGGVDSSVAAWLLKEQGYDVVGVTMQIWQDEEEQTQEENGGCCGLSAVEDAR 61 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV T+ + +YV +++ F+ V+ FA Y G TP PC+ CNR VK+ LL + +G Sbjct: 62 RVAQTLEIPYYVMNFKAEFKEKVMDYFAQEYLCGRTPNPCIACNRYVKWEALLQRSLAIG 121 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY R R G R +CR +DQ+Y L+ TQ+QL P+G+ K Sbjct: 122 ADYIATGHYARIRQLPG----GRYTICRSATAAKDQTYALYNLTQEQLAHTLMPVGEYTK 177 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 E +R +A ++GL +A+K DSQ+ICFV Y ++ G+ V +G +LG+H Sbjct: 178 EEIRGIAEKIGLRVANKPDSQEICFVPDDDYASFIEEYTGREMPAGNFVTADGTVLGQHR 237 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI +YTIGQRRGL + MG +FV + ++ V++G E L R+ ++N++ Sbjct: 238 GITHYTIGQRRGLQLPMGHRVFVTDIRPETNEVVIGENEELFKRRLLANKLNFMSV---- 293 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + KIR + P ++ D V F++ + + GQA VFY ++ Sbjct: 294 PEIDGDTRVTAKIRYNHRGAPATIRMAGPDMVECIFDEPQRAMTPGQAVVFYDGEN---- 349 Query: 377 VLGGGII 383 VLGGG I Sbjct: 350 VLGGGTI 356 >gi|330815569|ref|YP_004359274.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia gladioli BSR3] gi|327367962|gb|AEA59318.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia gladioli BSR3] Length = 390 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 127/381 (33%), Positives = 178/381 (46%), Gaps = 32/381 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D Sbjct: 2 KKQRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R R + + R + + D +DQSYFL Q QL FPLG+M K Sbjct: 119 ETIATGHYARVR-----EREGRFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEMPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A ++GL A K DS ICF+ + + D + R G + G+ +G H G Sbjct: 174 RVREIAEQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPEGKRVGEHIG 231 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT GQR+G+G+ GEP FV D S+ + V L + ++W Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAGKDIASNTLYVAQGHEHPWLLSRELVAGNVSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV------QRNDDGVYVDFEKSEVGVASGQA 364 + + DGF C K R Q P + + + F+ + V GQ+ Sbjct: 292 VAG----EPPADGFACGAKTRYRQADAPCSFARAKAGEAGEARFSLGFDTPQWAVTPGQS 347 Query: 365 CVFYTSDSNEARVLGGGIISG 385 V Y + LGGGII Sbjct: 348 AVLYDGEI----CLGGGIIES 364 >gi|220931733|ref|YP_002508641.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Halothermothrix orenii H 168] gi|259495830|sp|B8CWH7|MNMA_HALOH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|219993043|gb|ACL69646.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Halothermothrix orenii H 168] Length = 358 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 140/365 (38%), Positives = 208/365 (56%), Gaps = 14/365 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80 RV+VAMSGGVDSSV AALLK GY+VIG T++++ + + +G CC+ + DARRV Sbjct: 3 RVLVAMSGGVDSSVTAALLKEQGYEVIGGTMEIFPDYEQPPLDEGGCCSLSSIEDARRVA 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 I + HY F+ ++ F VI F + Y TP PCV CN +KF LL +L AD Sbjct: 63 HHIGIRHYTFNLKKVFEEEVINNFVNEYKNARTPNPCVVCNNEIKFRSLLKKALELDADY 122 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY V + + ++ + D+++DQ+Y L+ TQ QL PLG+ K+ V Sbjct: 123 IATGHYA----IVEHNVNGKHLLKKAKDVDKDQTYMLYGLTQFQLSHTLMPLGNYTKQEV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A++ G I +K +SQ+ICFV Y + G+ G ++ +G ILG+H G+ Sbjct: 179 RQMAKDFGFRIHNKPESQEICFVPDNNYTRFLDENYPGLGKPGPVMDTDGNILGKHKGLH 238 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +YTIGQRRGLG+++G P++VV LD+ + VI+GP E + + ++NW+ D + Sbjct: 239 HYTIGQRRGLGISLGYPVYVVKLDREKNAVIIGPEEEVYSKSLIANKVNWISI----DKL 294 Query: 321 VDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + K +IR + + ND+ V V F+K + V GQ+ VFY V+G Sbjct: 295 TEPIKVTARIRYNSPESHAKIYPVNDNEVKVVFDKKQRAVTPGQSVVFYDGKV----VVG 350 Query: 380 GGIIS 384 GGII Sbjct: 351 GGIIK 355 >gi|255659674|ref|ZP_05405083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mitsuokella multacida DSM 20544] gi|260848239|gb|EEX68246.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mitsuokella multacida DSM 20544] Length = 366 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 153/376 (40%), Positives = 207/376 (55%), Gaps = 14/376 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS-RKASKRKGSCCAGQDVYDARR 78 +VVVAMSGGVDSS+ AALLK GY+ IGVT++L R + CC+ V DARR Sbjct: 3 KKKVVVAMSGGVDSSLTAALLKEQGYEAIGVTMRLSEESRDFDENDRGCCSLSSVDDARR 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + I + HY +++E F+ VI F + YA G TP PC+ CNR VKF LL +LGA Sbjct: 63 VAEIIGIPHYTMNFKEMFQEKVIDYFLADYAKGWTPNPCIACNRYVKFEGLLQKAMELGA 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R + D R ++ + +D +DQSY L+ QQ L PLGD K Sbjct: 123 DYVATGHYAR----IAQDESGRYVLKKGIDTHKDQSYALYHLNQQSLAHFLMPLGDYTKV 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R++A L +A K DSQ+ICFV Y ++ N GDIV G +LG H G Sbjct: 179 ETREMAERYKLPVAHKPDSQEICFVPHDDYKAYLRAKNPSCLHPGDIVDKEGHVLGHHEG 238 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 + YTIGQR+GLG+A EPL+VV LD +RV+VG + + ++NW+ D Sbjct: 239 VPLYTIGQRKGLGIAHPEPLYVVDLDMAHNRVVVGGAGDVFSDGLIAGDLNWIAI----D 294 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 A+ + K+R + V+ G V V F + + V GQ+ VFY D+ V Sbjct: 295 ALEAPIEVTAKVRYGRREGRAHVEPLAGGKVRVHFAEPQRAVTPGQSVVFYAGDT----V 350 Query: 378 LGGGIISGSKRSDAVE 393 +GGGII + R +A E Sbjct: 351 VGGGIIEKAIRKEAAE 366 >gi|225174584|ref|ZP_03728582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dethiobacter alkaliphilus AHT 1] gi|225169711|gb|EEG78507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dethiobacter alkaliphilus AHT 1] Length = 366 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 146/376 (38%), Positives = 209/376 (55%), Gaps = 16/376 (4%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG----SCCAGQDV 73 K+ RV+VAMSGGVDSS+ AALLK GY+ IGVT++L+ S CC+ V Sbjct: 2 KKNNRVLVAMSGGVDSSLCAALLKEQGYEAIGVTMRLWVSPDFEDEAKHSGRGCCSLSAV 61 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DARRV D + + YV +++E FR V+ F Y G TP PC+ CNR +KF LL Sbjct: 62 DDARRVADKMEMPFYVLNFKESFRTQVVDYFVDEYRRGRTPNPCIACNRYLKFDLLLKKA 121 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +L A +ATGHY R D+ R + + D +DQ+Y L+ TQ+QL FPLG Sbjct: 122 FELEAWYVATGHYARVEY---DESLERFRLKKAADARKDQTYTLYNLTQKQLAHTLFPLG 178 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 K VR++A + GL +ADK DSQ+ICF+ Y ++ + G I+ L+G L Sbjct: 179 GFLKSEVREMAAKYGLAVADKPDSQEICFIPDDDYKRFLREETDVESKPGPILDLDGNRL 238 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G H G++NYT+GQR+GLG+A+G P+FVV LD ++ +IVG + + ++N++ Sbjct: 239 GTHQGLVNYTVGQRKGLGIAVGRPIFVVELDVENNTLIVGDDRDVFFRALVADDLNFI-- 296 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 D + + + KIR VP + G ++F++ E V GQ+ VFY D Sbjct: 297 --LIDELKEPRRVMAKIRYHAKEVPALLSPLPHGQAKLEFDEPERAVTPGQSVVFYEGDD 354 Query: 373 NEARVLGGGIISGSKR 388 V+GGGII + R Sbjct: 355 ----VVGGGIIQQAIR 366 >gi|167037462|ref|YP_001665040.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300914208|ref|ZP_07131524.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter sp. X561] gi|307724557|ref|YP_003904308.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter sp. X513] gi|320115876|ref|YP_004186035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|205810696|sp|B0K991|MNMA2_THEP3 RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|205815314|sp|B0K0P8|MNMA2_THEPX RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|166856296|gb|ABY94704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300889143|gb|EFK84289.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter sp. X561] gi|307581618|gb|ADN55017.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter sp. X513] gi|319928967|gb|ADV79652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 364 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 139/369 (37%), Positives = 211/369 (57%), Gaps = 14/369 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDAR 77 + RV + MSGGVDSSV A LLK+ G+DVIG+T++++ +A SCC+ + DA+ Sbjct: 4 NNRVAIGMSGGVDSSVAAYLLKKQGFDVIGLTMRVWVDHEAKAFDSDKSCCSLKATQDAK 63 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 +V + + + HY D + F + ++ F + Y G TP PCV CNR +KF +LL +LG Sbjct: 64 KVAEILGIPHYTVDLSKIFYDKIVNYFVNEYLKGRTPNPCVLCNRQIKFGELLEKAFELG 123 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A +ATGHY+R D+ +R ++ + +D +DQSY L+ TQ+QL FPLG+ KK Sbjct: 124 AYYIATGHYVRKEY---DEKTKRYLLKKGIDSSKDQSYVLYRLTQKQLEHALFPLGNYKK 180 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 E +R LA E+ L +A K +SQ+ICF+ Y ++KR G+ ++G+ LG H Sbjct: 181 EEIRALAEELKLPVAKKPESQEICFIPDNDYSGLIKRQVKDEIKPGEFRDVHGKFLGYHK 240 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GII+YTIGQRRGLG++ PL+VV +D ++ V+VG +E + + N++ Sbjct: 241 GIIHYTIGQRRGLGLSSDRPLYVVDIDVKNNVVVVGHQEDVWGEELISSNNNFISI---- 296 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + K KIR + ++ +D V V F K + + GQ+ VFY D Sbjct: 297 EKLEKEMKVTAKIRYTAKEEEAIIKPYEEDKVLVKFLKPQRAITPGQSVVFYDKDV---- 352 Query: 377 VLGGGIISG 385 V+GGGII Sbjct: 353 VVGGGIIER 361 >gi|260913335|ref|ZP_05919816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pasteurella dagmatis ATCC 43325] gi|260632566|gb|EEX50736.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pasteurella dagmatis ATCC 43325] Length = 383 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 125/392 (31%), Positives = 209/392 (53%), Gaps = 29/392 (7%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 L++ L +N K +V+ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 11 PPLSTAQLSENSK-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 66 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C A D+ DA+ VCD + + + ++ + + V F Y AG TP P + CN+ +KF Sbjct: 67 CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLQEYKAGRTPNPDILCNKEIKF 126 Query: 127 SDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 L LGAD +ATGHY+R G+ + R +D +DQSYFL+ ++ Q+ Sbjct: 127 KAFLEYAAEDLGADYIATGHYVRRSEKDGEC-----QLLRGLDNNKDQSYFLYTLSKDQV 181 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 182 AQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGEI 239 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES--- 297 ++G ++GRH+G++ +T+GQR+GLG+ +P +VV D ++ ++V Sbjct: 240 KTVDGVVVGRHDGLMYHTLGQRKGLGIGGVKGMSEDPFYVVEKDLANNVLVVAQGHDNSA 299 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356 L + +++W+ + V +C VK R Q+ +P +Q DD + V F++++ Sbjct: 300 LLSSGLIASQLHWVDRKVIRKPV----RCTVKTRYRQEDIPCEIQPIDDETIRVVFDEAQ 355 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIISGSKR 388 + V GQ+ VFY + LGGG+I + Sbjct: 356 IAVTPGQSAVFYQGEV----CLGGGVIETQIK 383 >gi|78222093|ref|YP_383840.1| tRNA-specific 2-thiouridylase MnmA [Geobacter metallireducens GS-15] gi|123572471|sp|Q39XA9|MNMA_GEOMG RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|78193348|gb|ABB31115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacter metallireducens GS-15] Length = 368 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 158/371 (42%), Positives = 210/371 (56%), Gaps = 18/371 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN----SRKASKRKGSCCAGQDVYDA 76 R+VVAMSGGVDSSV AALLK +G++VIG+++Q+++ S ++ +CC+ D++DA Sbjct: 7 KRIVVAMSGGVDSSVTAALLKEEGHEVIGISMQVWDYSKFSAPEGEKFDTCCSLDDIHDA 66 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV + I + YV ++EE F+ VI F Y G TP PCV CN+ VKF LL R+L Sbjct: 67 RRVAEQIGIPFYVVNFEEEFQRLVIDDFVDEYFRGRTPNPCVRCNQRVKFELLLRKAREL 126 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD+LATGHY R + G + R D +DQSYFLF TQ+QL + FPLG M Sbjct: 127 GADLLATGHYAR----IERGGDGLFHLLRGDDPGKDQSYFLFTLTQEQLARVTFPLGGMT 182 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA GL +A+K +SQ+ICFV Y ++ L G+IV G +LG H Sbjct: 183 KPEVRQLATRFGLRVAEKGESQEICFVPDNDYVRFLEDERGAGQLVGEIVDRAGTVLGHH 242 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G YT+GQRRGLG+A PL+VV +D +VIVGP+E L + ++ W+ Sbjct: 243 EGTYRYTVGQRRGLGIAHPHPLYVVGVDAERRQVIVGPKEELLAPGLVATDVTWV----- 297 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + + KIR PVP V + V F + E V GQA VFY D Sbjct: 298 IALATETLEAACKIRYRHHPVPCTVTVLAGNRAQVRFREPEKSVTPGQAVVFYHGD---- 353 Query: 376 RVLGGGIISGS 386 VLGGG I + Sbjct: 354 EVLGGGWIDAA 364 >gi|227529026|ref|ZP_03959075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus vaginalis ATCC 49540] gi|227351038|gb|EEJ41329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus vaginalis ATCC 49540] Length = 377 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 134/390 (34%), Positives = 198/390 (50%), Gaps = 25/390 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLKR GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DKSHTRVVVGMSGGVDSSVTALLLKRQGYDVVGVFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F + Y G TP P V CN+ +KF + QL Sbjct: 60 AKVATKIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIDYANQL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + D R + R D +DQ+YFL QQL + FPL + Sbjct: 120 GADYVATGHYADLKR----DADGRMHLMRAKDQNKDQTYFLSQLDYQQLDKVLFPLANYT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K +R +A E GL A K DS ICF+ + G + + + + A G++ ++G+++G+ Sbjct: 176 KPEIRQIAEEAGLATAKKKDSVGICFIGEDGHFREFLSQYIP--AQPGNMETVDGKVVGQ 233 Query: 256 HNGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 H G++ YTIGQRRGLG+ + P FV+ D + + VG E L + +I Sbjct: 234 HMGLMYYTIGQRRGLGLGGNKKSNAPWFVIGKDIKKNVLYVGQGYENEHLYATHLEASDI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366 +W+ D + F C K R Q V V V ++D V V F+ + GQA V Sbjct: 294 HWVDDAVSRYG--HDFHCTAKFRYRQKDVGVTVHISEDEQMVTVTFDDPARAITPGQAVV 351 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396 FY + LG II + D + + + Sbjct: 352 FYDGE----ECLGSAIIDRAYNHDHLCQYV 377 >gi|297205825|ref|ZP_06923220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus jensenii JV-V16] gi|297148951|gb|EFH29249.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus jensenii JV-V16] Length = 375 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 132/393 (33%), Positives = 190/393 (48%), Gaps = 29/393 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSKIRVVVGMSGGVDSSVSALLLKEAGYDVVGVFMKNWDD---TDDAGVCTATEDYEDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +RV D I + +Y ++E+ + V F S Y G TP P + CN +KF L L Sbjct: 60 KRVADKIGIPYYSINFEKEYWQRVFEYFLSEYKKGRTPNPDIMCNTEIKFKSFLEFAMSL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY ++ D M RP D +DQ+YFL +Q+Q+ + FPL ++ Sbjct: 120 DADYIAMGHYAKTVK----DKNGVTHMMRPKDGNKDQTYFLSQLSQEQIKHVIFPLANLT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + A G +V +G ++G H Sbjct: 176 KPQVREIAERSGLATAKKKDSTGICFIGERNFKKFLSEFLP--AKPGKMVTPDGNVVGNH 233 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 +G++ YTIGQR+GLG+ + P FVV D + +IV L + ++ Sbjct: 234 SGLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLKKNELIVEQGYDSPRLYATSLKASGMS 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367 + D F C K R Q V V V D V F++ V GQA V Sbjct: 294 FYTGNPDHD---VEFDCTAKFRYRQADVAVHVKYHAADKTCDVYFDEPARAVTPGQALVL 350 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 Y + LGGG I + + EE L ++ Sbjct: 351 YKGE----ECLGGGNIDAAYQ----EEKQLQLV 375 >gi|148543839|ref|YP_001271209.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus reuteri DSM 20016] gi|184153240|ref|YP_001841581.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus reuteri JCM 1112] gi|227364743|ref|ZP_03848792.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus reuteri MM2-3] gi|325682630|ref|ZP_08162147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus reuteri MM4-1A] gi|166991123|sp|A5VJ48|MNMA_LACRD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|229486414|sp|B2G6L9|MNMA_LACRJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|148530873|gb|ABQ82872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus reuteri DSM 20016] gi|183224584|dbj|BAG25101.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Lactobacillus reuteri JCM 1112] gi|227070202|gb|EEI08576.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus reuteri MM2-3] gi|324978469|gb|EGC15419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus reuteri MM4-1A] Length = 377 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 136/390 (34%), Positives = 197/390 (50%), Gaps = 25/390 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLKR GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSHTRVVVGMSGGVDSSVTALLLKRQGYDVVGVFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F + Y G TP P V CN+ +KF + QL Sbjct: 60 AKVASKIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + D R + R D +DQ+YFL +QL + FPL Sbjct: 120 GADYVATGHYADVKR----DENGRMHLMRAKDQHKDQTYFLSQLDYKQLDKVMFPLAGYT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K +R +A E GL ADK DS ICF+ + G + + + + A G++ L+G+++G+ Sbjct: 176 KPEIRKIAEEAGLATADKKDSVGICFIGEDGHFREFLSQYIP--AQPGNMETLDGKVVGQ 233 Query: 256 HNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 H G++ YTIGQRRGLG+ EP FV+ D + + VG L + +I Sbjct: 234 HMGLMYYTIGQRRGLGLGGNKESNEPWFVIGKDMKKNVLYVGQGYENSHLYATHLEASDI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366 +W+ D + F C K R Q V V V +DD V V+F+ + GQA V Sbjct: 294 HWVDDVVSRYG--RDFHCTAKFRYRQTDVGVTVHLSDDDQMVTVEFDDPARAITPGQAVV 351 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396 FY + LG II + D + + Sbjct: 352 FYDGE----ECLGSAIIDRAYSHDRQLQYV 377 >gi|300811318|ref|ZP_07091815.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497682|gb|EFK32707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 375 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 135/387 (34%), Positives = 192/387 (49%), Gaps = 25/387 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSKIRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TNDDGVCTATEDYEDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++V D I + +Y ++E+ + V F Y AG TP P + CN +KF L L Sbjct: 60 KKVADKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEIKFKSFLEYALDL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD LA GHY ++ + D M RP D +DQ+YFL TQ+Q+ + FPL D+ Sbjct: 120 DADYLAMGHYAKTMV----DENGVTHMMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQDLT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A E GL A K DS ICF+ + + + A GD+V +G+++G+H Sbjct: 176 KPEVRRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLP--AQGGDMVTPDGKVVGQH 233 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G++ YTIGQR+GLG+ + P FVV D +++IV L R+ + Sbjct: 234 AGLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIVEQGYDSPRLYADRLQASGMT 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367 + ED FK K R Q V V V V F++ V GQA V Sbjct: 294 FFTGNPEEDT---EFKATAKFRYRQCDVGVTVKYHAASKTADVYFDEPARAVTPGQALVL 350 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEE 394 Y + LGGG I + + D + Sbjct: 351 YNGE----ECLGGGNIDAAFKDDKKLQ 373 >gi|302392703|ref|YP_003828523.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acetohalobium arabaticum DSM 5501] gi|302204780|gb|ADL13458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acetohalobium arabaticum DSM 5501] Length = 361 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 137/375 (36%), Positives = 217/375 (57%), Gaps = 18/375 (4%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAG 70 L LD+N RVVVAMSGGVDSS+ AA+LK++GY+VIG+T++++ S + + CC+ Sbjct: 2 LGLDQN----RVVVAMSGGVDSSLAAAILKKEGYEVIGITMKIWPSEETPVDNENGCCSL 57 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 V DARRV +++ YV ++E+ F+ VI F + YA TP PCV CN+ +KF+ L Sbjct: 58 SAVNDARRVAYKLDIPFYVINFEDLFKRTVIQNFKNEYAQARTPNPCVVCNKVIKFNAFL 117 Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 + ++LGA +ATGHY ++ +DG R ++ + ++DQ+Y L+ TQ+QL F Sbjct: 118 NKAKELGAYYMATGHYA--KIIQNEDG--RYLLKKSAAPDKDQTYMLYNLTQEQLKHTIF 173 Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250 PL + K+ R+LA++ L + DK +SQ+ICF+ Y ++ + I G I+ + G Sbjct: 174 PLAEYTKQQTRELAKDYDLKVYDKPESQEICFIPDDDYRRFLQENHPEIIEPGPILDVEG 233 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 LG H G+ YTIGQRRGLG+ + L+VV +D + +IVG E + + + EINW Sbjct: 234 NKLGEHKGLPFYTIGQRRGLGLENNKKLYVVDMDPERNALIVGDNEDVFAKELIVEEINW 293 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYT 369 + + + + + KIR + + ++ V V F + + + GQ+ VFY Sbjct: 294 ISI----EKLTEPKEVQAKIRYNSPAAEATIYPVEENVAKVVFAEPQRAITPGQSAVFY- 348 Query: 370 SDSNEARVLGGGIIS 384 N+ V+GGG+I Sbjct: 349 ---NQNIVVGGGVIK 360 >gi|302387623|ref|YP_003823445.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium saccharolyticum WM1] gi|302198251|gb|ADL05822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium saccharolyticum WM1] Length = 372 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 136/365 (37%), Positives = 201/365 (55%), Gaps = 14/365 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + G CC V DARRV Sbjct: 18 KVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEDTGTQEENGGCCGLSAVDDARRV 77 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + +YV +++E F++ VI F Y G TP PC+ CNR VK+ LL + +GAD Sbjct: 78 AWDLGIPYYVMNFKEEFKSQVIDYFVGEYQKGRTPNPCIACNRYVKWESLLKRSLDIGAD 137 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + R + + + +DQ+Y L+ TQ QL P+G K+ Sbjct: 138 YIATGHYAQIEKLP----NGRYALKKSVTAAKDQTYALYNLTQHQLSHTLMPVGAYSKDQ 193 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R++A + L +A K DSQ+ICF+ Y ++ A EG+ V L+GQ++GRH GI Sbjct: 194 IREIADRINLMVAHKPDSQEICFIPDNDYAGFIEESAGEKAPEGNFVDLSGQVIGRHKGI 253 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YT+GQR+GL ++MG P+FVV + ++ V++G + + + INW+ Sbjct: 254 THYTVGQRKGLNLSMGRPVFVVEIRPEANEVVIGTGDDVFSQTLRANHINWMAVDGLHG- 312 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + KIR S ++ +DG V F++ + + GQA VFY D V+ Sbjct: 313 --ESMRVLAKIRYSHKGAMCTIREAEDGVVECRFDEPQRAITPGQAVVFYEGD----YVV 366 Query: 379 GGGII 383 GGG I Sbjct: 367 GGGTI 371 >gi|94499665|ref|ZP_01306202.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oceanobacter sp. RED65] gi|94428419|gb|EAT13392.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oceanobacter sp. RED65] Length = 369 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 120/379 (31%), Positives = 193/379 (50%), Gaps = 26/379 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + +V+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ V Sbjct: 8 NTKVIVGMSGGVDSSVSAYLLMEQGYHVEGLFMKNWEEDDGTE---YCTAKEDLADAQAV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + + + ++ + + V F Y AG TP P + CNR +KF L + LGAD Sbjct: 65 CDKLGIKLHSANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYAKILGAD 124 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R G + + +D +DQSYFL A + ++ FP+G+++K Sbjct: 125 YIATGHYVRRYEKDGS-----TYLLKGLDNNKDQSYFLHAVGEDEIKQTLFPVGELEKPE 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E GL A K DS ICF+ + ++ D +K+ A G I G+ +GRH G+ Sbjct: 180 VRRIAEEQGLATAKKKDSTGICFIGERRFKDFLKQYIP--AQPGTIKTPEGEEMGRHEGL 237 Query: 260 INYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + YT+GQR+G+G+ + P +VV D + ++VG L + I W+ Sbjct: 238 MYYTLGQRQGIGIGGSKHHGEAPWYVVGKDLERNELMVGQGKDHPLLFSKSLDCFNIYWV 297 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + +C K+R Q + + D G ++ F++ + V GQ+ V Y + Sbjct: 298 NG----EPADLPKRCKAKVRYRQADQDCTIDKTDSGYHIIFDEPQRAVTPGQSLVLYDGE 353 Query: 372 SNEARVLGGGIISGSKRSD 390 LGGGII ++ ++ Sbjct: 354 I----CLGGGIIERTQLAE 368 >gi|194468395|ref|ZP_03074381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus reuteri 100-23] gi|194453248|gb|EDX42146.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus reuteri 100-23] Length = 377 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 135/390 (34%), Positives = 197/390 (50%), Gaps = 25/390 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLKR GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSHTRVVVGMSGGVDSSVTALLLKRQGYDVVGVFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F + Y G TP P V CN+ +KF + QL Sbjct: 60 AKVASKIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + D R + R D +DQ+YFL +QL + FPL Sbjct: 120 GADYVATGHYADVKR----DENGRMHLMRAKDQHKDQTYFLSQLDYKQLDKVMFPLAGYT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K +R +A E GL ADK DS ICF+ + G + + + + A G++ L+G+++G+ Sbjct: 176 KPEIRKIAEEAGLATADKKDSVGICFIGEDGHFREFLSQYIP--AQPGNMETLDGKVVGQ 233 Query: 256 HNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 H G++ YTIGQRRGLG+ EP FV+ D + + VG L + ++ Sbjct: 234 HMGLMYYTIGQRRGLGLGGNKESNEPWFVIGKDMKKNVLYVGQGYENSHLYATHLEASDV 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366 +W+ D + F C K R Q V V V +DD V V+F+ + GQA V Sbjct: 294 HWVDDVVSRYG--RDFHCTAKFRYRQTDVGVTVHLSDDDQMVTVEFDDPARAITPGQAVV 351 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396 FY + LG II + D + + Sbjct: 352 FYDGE----ECLGSAIIDRAYSHDRQLQYV 377 >gi|329770388|ref|ZP_08261770.1| tRNA-specific 2-thiouridylase mnmA [Gemella sanguinis M325] gi|328836511|gb|EGF86171.1| tRNA-specific 2-thiouridylase mnmA [Gemella sanguinis M325] Length = 370 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 128/381 (33%), Positives = 191/381 (50%), Gaps = 21/381 (5%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GYDVIGV ++ + + KG C A +D D +V Sbjct: 4 GKKVVVGMSGGVDSSVTAYLLKEQGYDVIGVFMKNWEEKDD---KGVCVAEKDYADVIKV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C+ +++ +Y ++E+ + + V F Y G TP P + CN+ +KF L LGAD Sbjct: 61 CEQLDIPYYSINFEKEYWDKVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLEYAEDLGAD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + D +R++ R +D +DQ+YFL Q Q+ ++ FP+G+++K+ Sbjct: 121 YVATGHYARVK-----DENGQRLLLRGVDNNKDQTYFLSQLKQHQIKNILFPVGELEKKD 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E GL A K DS ICF+ + + + + + + G +V L+G + G H G+ Sbjct: 176 VRRIAEEAGLATAKKKDSTGICFIGEKNFREFLSQYLP--SQSGKMVDLDGNVRGEHIGL 233 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 ++YTIGQR GLG+ GE F D ++ + V E + Sbjct: 234 MHYTIGQRHGLGIGGTKDTDGEAWFACGKDLENNILYVCQGFHNEKLYSDSLLAS-SLSF 292 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 +D + F C K R Q V V+ D V V +++ V GQA VFY D Sbjct: 293 TTKDPQPNKFTCTAKFRYRQPDTEVEVEILEGDKVRVVYKEPVRAVTPGQAVVFYDGDI- 351 Query: 374 EARVLGGGIISGSKRSDAVEE 394 LGG I + + Sbjct: 352 ---CLGGATIDEVYKDGKKLQ 369 >gi|261867343|ref|YP_003255265.1| tRNA-specific 2-thiouridylase MnmA [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412675|gb|ACX82046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aggregatibacter actinomycetemcomitans D11S-1] Length = 383 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 125/389 (32%), Positives = 207/389 (53%), Gaps = 29/389 (7%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 +L + L +N +++ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 11 PKLTAQQLAENAT-KKIICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 66 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C A D+ DA+ VCD + + + ++ + + V F S Y AG TP P + CN+ +KF Sbjct: 67 CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKF 126 Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 L LGA+ +ATGHY+R R + + R +D +DQSYFL+ ++ Q+ Sbjct: 127 KAFLEYAAEDLGANYIATGHYVRRRGADDN-----AQLLRGLDNNKDQSYFLYTLSKTQV 181 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+G+++K VR +A E+GL A K DS ICF+ + K+ D + R A G+I Sbjct: 182 GQSLFPVGNIEKPIVRAIAEELGLVTAKKKDSTGICFIGERKFKDFLARYLP--AQPGNI 239 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RES 297 ++G+I+GRH+G++ +T+GQR+GLG+ + +VV D ++ +IV + Sbjct: 240 RTVDGEIIGRHDGLMYHTLGQRKGLGIGGVKGAGEDAWYVVEKDLINNELIVAQGHDHSA 299 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356 L + ++++W+ + +C VK R Q VP ++ DD + V F++ + Sbjct: 300 LLSTGLIAQQLHWVDCL----PIRAPLRCTVKTRYRQTDVPCIIEPIDDETIKVIFDEPQ 355 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIISG 385 + V GQ+ VFY + LGGGII Sbjct: 356 IAVTPGQSAVFYLDEI----CLGGGIIEK 380 >gi|150015984|ref|YP_001308238.1| tRNA-specific 2-thiouridylase MnmA [Clostridium beijerinckii NCIMB 8052] gi|205813680|sp|A6LSF2|MNMA_CLOB8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|149902449|gb|ABR33282.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium beijerinckii NCIMB 8052] Length = 358 Score = 475 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 134/368 (36%), Positives = 211/368 (57%), Gaps = 15/368 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARR 78 +V+V MSGGVDSSV A LLK+ GYDVIG T+Q++ + +R+G CC+ V DARR Sbjct: 2 KKKVLVGMSGGVDSSVAAYLLKQQGYDVIGATMQIWQHDEEFEEREGGCCSLSAVDDARR 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD +++ YV ++ + F+ VI F Y G+TP PC++CN+ +KF +LL R +GA Sbjct: 62 VCDKLDIPFYVLNFRDYFKEKVIDKFVQEYIDGKTPNPCIECNKHLKFDELLRRARGIGA 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + R ++ R D +DQ+Y L+ TQ QL P GD +K Sbjct: 122 DYVATGHYAKIEKRDD-----RYLLIRSDDDRKDQTYALYNFTQDQLEHTLMPCGDYEKT 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A+E+GL + +K DS++ICF+ + + G+ V +G ILG+H G Sbjct: 177 KIREIAKEIGLAVHNKKDSEEICFISDNNHGKYISEAEPNRVKPGNFVDKSGNILGKHKG 236 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I+ YTIGQR+GLG+++G P+FV ++ ++ V++G + + + ++N++ D Sbjct: 237 IVYYTIGQRKGLGLSLGRPVFVTNINAKTNEVVLGSEDDIFKTELIATDVNFI----PFD 292 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + KIR S P + +G V V F++ + + GQ+ VFY + V Sbjct: 293 KLEKEIEVTAKIRYSARPAEATLIPLPNGRVKVIFKEKQRAITKGQSVVFYDDEI----V 348 Query: 378 LGGGIISG 385 +GGGII Sbjct: 349 VGGGIIES 356 >gi|266623735|ref|ZP_06116670.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium hathewayi DSM 13479] gi|288864455|gb|EFC96753.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium hathewayi DSM 13479] Length = 369 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 135/367 (36%), Positives = 194/367 (52%), Gaps = 14/367 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDAR 77 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + + G CC V DAR Sbjct: 13 KPKVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEETEVQEESGGCCGLSAVDDAR 72 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV + + +YV +++E FR VI F Y G TP PC+ CNR VK+ LL + +G Sbjct: 73 RVAWDLGIPYYVMNFKEEFRENVIDYFVDEYRNGRTPNPCIACNRYVKWESLLKRSLDIG 132 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY R R + + +DQ+Y L+ TQ QL P+G K Sbjct: 133 ADYIATGHYARIEQL----ENGRYALKMSVTAAKDQTYALYNLTQYQLAHTLMPVGAYSK 188 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + +R++A + L +A K DSQ+ICF+ Y ++ +G+ V L+G +LGRH Sbjct: 189 DQIREIADRINLKVAHKPDSQEICFIPDHDYARFIEENTGKEPAKGNFVDLDGNVLGRHE 248 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI +YT+GQR+GL ++MG P+FV + ++ V++G + + INW+ Sbjct: 249 GITHYTVGQRKGLNLSMGHPVFVTEIRPETNEVVIGNSADVFSDTLRCSRINWMAIDGLH 308 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + KIR S P + + +D V F++ + + GQA VFY E Sbjct: 309 G---GEMRVTAKIRYSHKGAPCTIREVGEDLVECRFDEPQRAITPGQAVVFYL----ENY 361 Query: 377 VLGGGII 383 V GGG I Sbjct: 362 VAGGGTI 368 >gi|227544860|ref|ZP_03974909.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus reuteri CF48-3A] gi|300909920|ref|ZP_07127380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus reuteri SD2112] gi|227185134|gb|EEI65205.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus reuteri CF48-3A] gi|300892568|gb|EFK85928.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus reuteri SD2112] Length = 377 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 135/390 (34%), Positives = 197/390 (50%), Gaps = 25/390 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLKR GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSHTRVVVGMSGGVDSSVTALLLKRQGYDVVGVFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F + Y G TP P V CN+ +KF + QL Sbjct: 60 AKVASKIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + D R + R D +DQ+YFL +QL + FPL Sbjct: 120 GADYVATGHYADVKR----DENGRMHLMRAKDQHKDQTYFLSQLDYKQLDKVMFPLAGYT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K +R +A E GL ADK DS ICF+ + G + + + + A G++ L+G+++G+ Sbjct: 176 KPEIRKIAEEAGLATADKKDSVGICFIGEDGHFREFLSQYIP--AQPGNMETLDGKVVGQ 233 Query: 256 HNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 H G++ YTIGQRRGLG+ EP FV+ D + + VG L + +I Sbjct: 234 HMGLMYYTIGQRRGLGLGGNKESNEPWFVIGKDMKKNVLYVGQGYENSHLYATHLEASDI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACV 366 +W+ D + F C K R Q V V V ++D V V+F+ + GQA V Sbjct: 294 HWVDDVVSRYG--RDFHCTAKFRYRQTDVGVTVHLSEDDQMVTVEFDDPARAITPGQAVV 351 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396 FY + LG II + D + + Sbjct: 352 FYDGE----ECLGSAIIDRAYSHDRQLQYV 377 >gi|167759055|ref|ZP_02431182.1| hypothetical protein CLOSCI_01402 [Clostridium scindens ATCC 35704] gi|167663462|gb|EDS07592.1| hypothetical protein CLOSCI_01402 [Clostridium scindens ATCC 35704] Length = 361 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 141/368 (38%), Positives = 213/368 (57%), Gaps = 15/368 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDA 76 + +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + + +G CC V DA Sbjct: 2 EKKKVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEERIVEEEQGGCCGLSAVDDA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV ++ + +YV ++++ F+ VI F Y G TP PC+ CNR VK+ LL + ++ Sbjct: 62 RRVAASLGIPYYVMNFKQEFKTYVIDYFMDEYLHGRTPNPCIACNRYVKWESLLKRSMEI 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R G R + +DQ+Y L++ TQ+QL P+G+ Sbjct: 122 GADYIATGHYARIERL----GNGRCSLRTSAASAKDQTYALYSLTQEQLKRTLMPVGEYT 177 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ +R LA ++GL++ADK DSQDICFV G Y ++ + L G+ V +G ++GRH Sbjct: 178 KDEIRKLAGKIGLNVADKPDSQDICFVPDGDYASYIEANSGARILPGNFVLSDGTVVGRH 237 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GI++YT+GQR+GLG+++G P+FV+ + ++ +IVG E + IN++ Sbjct: 238 KGIVHYTVGQRKGLGLSLGHPVFVLDIRPETNEIIVGTNEESLTCHVRADRINFMAI--- 294 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + + D + + KIR + V++ +D + FE+ + VA GQA V Y + Sbjct: 295 -EDLADKKRVWAKIRYNHRGAWCTVEKTGEDEILCIFEEPQRAVAPGQAVVLYDGE---- 349 Query: 376 RVLGGGII 383 VLGGG I Sbjct: 350 YVLGGGTI 357 >gi|148827312|ref|YP_001292065.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus influenzae PittGG] gi|205816853|sp|A5UFX6|MNMA_HAEIG RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|148718554|gb|ABQ99681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae PittGG] Length = 385 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 122/374 (32%), Positives = 201/374 (53%), Gaps = 26/374 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+ MSGGVDSSV A +L++ GY V G+ ++ + C A D+ DA+ VC Sbjct: 25 KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNW-EEDDDDDTDYCTAAADLADAQAVC 83 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLGAD 139 D + + + ++ + + V F + Y AG TP P + CN+ +KF L LGAD Sbjct: 84 DKLGIKLHKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLEYAAEDLGAD 143 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R GD+ + + R +D +DQSYFL+ + +Q+ FP+G+++K Sbjct: 144 YIATGHYVRRA---GDNENAK--LLRGLDANKDQSYFLYTLSHKQVGQSLFPVGEIEKPI 198 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++GL A K DS ICF+ + K+ D + R A G+I ++ +I+GRH+G+ Sbjct: 199 VRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARYLP--AQPGNIRTVDDEIIGRHDGL 256 Query: 260 INYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +T+GQR+GLG+ E +VV D ++ +IV L + +++W+ Sbjct: 257 MYHTLGQRKGLGIGGLKNAGDEAWYVVDKDVENNELIVAQGHDHPRLFSKGLIASQLHWV 316 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTS 370 + + + +C VK R Q +P ++ DD + V F++ + V GQ+ VFY Sbjct: 317 D----REPIRESLRCTVKTRYRQQDIPCVIEPIDDETIRVIFDEPQSAVTPGQSAVFYLG 372 Query: 371 DSNEARVLGGGIIS 384 + LGGGII+ Sbjct: 373 EV----CLGGGIIA 382 >gi|296161025|ref|ZP_06843836.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia sp. Ch1-1] gi|295888724|gb|EFG68531.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia sp. Ch1-1] Length = 381 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 128/392 (32%), Positives = 179/392 (45%), Gaps = 29/392 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 +VVV MSGGVDSSV A LLK GYDV+G+ ++ + S+ C QD D Sbjct: 2 SKQKVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAISLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R R + R + + D +DQSYFL Q QL FPLG+ K Sbjct: 119 ETIATGHYARVR-----ENNGRFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGETPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A ++ L A K DS ICF+ + + D + R G + G+++G H G Sbjct: 174 KVREIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTTEGKVVGEHIG 231 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT GQR+G+G+ GEP FV D S+ + V L H + +W Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAGKDIPSNTLYVAQGHDHPWLLSHTLSAGNTSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG---VYVDFEKSEVGVASGQACVF 367 + + DGF C K R Q P G ++F+ ++ V GQ+ V Sbjct: 292 VAG----EPPADGFACGAKTRYRQADAPCTFSSAGAGEGLFELNFDTAQWAVTPGQSAVL 347 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSV 399 Y D LGGGII + V Sbjct: 348 YDGDV----CLGGGIIEHAVTGQPVTRQPQKA 375 >gi|209519013|ref|ZP_03267821.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia sp. H160] gi|209500525|gb|EEA00573.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia sp. H160] Length = 416 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 124/394 (31%), Positives = 180/394 (45%), Gaps = 31/394 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 +VVV MSGGVDSSV A LLK GYDV+G+ ++ + S+ C QD D Sbjct: 2 SKRKVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R R + R + + +D +DQSYFL Q QL FPLG++ K Sbjct: 119 ETIATGHYARVR-----ENDGRFELLKALDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A ++GL A K DS ICF+ + + D + R G + +G+ +G H G Sbjct: 174 KVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTTDGKTVGEHIG 231 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT GQR+G+G+ GEP F D ++ + V L H + +W Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFAAGKDIPTNTLYVAQGHDHPWLLCHTLSAGNTSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-----QRNDDGVYVDFEKSEVGVASGQAC 365 + + +GF C K R Q ++ + F+ ++ V GQ+ Sbjct: 292 VAG----EPPAEGFACGAKTRYRQADAACTFNAASGNASEGLFDLTFDAAQWAVTPGQSA 347 Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVEESLLSV 399 V Y D LGGGII + E Sbjct: 348 VLYDGDV----CLGGGIIERAMTGQPAELPQDQA 377 >gi|157273520|gb|ABV27419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Chloracidobacterium thermophilum] Length = 392 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 156/396 (39%), Positives = 213/396 (53%), Gaps = 45/396 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN------SRKASKRKGSCCAGQDVYD 75 R+ VAMSGGVDSS AALLK GYDV+G ++QL+N + + CC+ D+YD Sbjct: 4 RIAVAMSGGVDSSTAAALLKEQGYDVVGFSMQLWNQRRINVDAEGNPLPSRCCSLDDLYD 63 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 AR V + + + YV ++EE F V+ PF SY G TP PCV CN +KF L+++ R Sbjct: 64 ARAVAEALGIPFYVLNFEEEFEARVVRPFVVSYLNGNTPSPCVACNSRMKFDTLVALARD 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 +GA +ATGHY R + +D R + + DL +DQSYFLF TQ+QL FPLG++ Sbjct: 124 VGAAKVATGHYARVQF---NDTTGRWELRKGRDLHKDQSYFLFELTQEQLAWALFPLGEL 180 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI---------------- 239 K R LAR GL A+K++SQ+ICF+ G Y ++R A Sbjct: 181 SKAETRALARRYGLPTAEKAESQEICFIPDGNYARFIERYLAEAGGTVAGEPQSPVAPTL 240 Query: 240 ---------ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV--AMGEPLFVVYLDKNSS 288 G+IV +G++LGRHNGI +YT+GQRRGLGV G PL+VV +D Sbjct: 241 VQLGLRRNMPQPGEIVTTDGRVLGRHNGIHHYTVGQRRGLGVTAGDGRPLYVVRIDAARG 300 Query: 289 RVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG- 347 +VIVGP E+L + +NW+ + +C +IR P + DG Sbjct: 301 QVIVGPEEALTGKTLTATRVNWITL----PELTAPRRCAARIRYRHLEAPATIYPLPDGN 356 Query: 348 VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 V V F+ + + GQA VFY + VLGGG I Sbjct: 357 VRVVFDIPQKAITPGQAVVFYDGE----LVLGGGWI 388 >gi|323466789|gb|ADX70476.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus helveticus H10] Length = 375 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 131/384 (34%), Positives = 191/384 (49%), Gaps = 25/384 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSKIRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TDDSGVCTATEDYEDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++V D I + +Y ++E+ + + V F + Y G TP P V CN +KF L L Sbjct: 60 KKVADKIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLDFAMDL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY ++ D M RP D +DQ+YFL Q Q+ + FPL ++ Sbjct: 120 DADYIAMGHYAKTVK----DADGLTHMMRPKDGNKDQTYFLNQLNQDQIKKVIFPLANLT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL IA K DS ICF+ + + + A G +V +G+++G H Sbjct: 176 KPQVREIALANGLAIAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGKVVGEH 233 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309 G++ YTIGQR+GLG+ + P FVV D + +IV L R+ +++ Sbjct: 234 AGLMYYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSKLLYASRLKASDMS 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367 + D F C K R Q V V V +D+ V F++ V GQA V Sbjct: 294 FFTGKPDHD---VEFHCSAKFRYRQCDVGVTVKYHADDNTADVYFDEPARAVTPGQALVL 350 Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391 Y + LGGG I + + D Sbjct: 351 YQGE----ECLGGGNIDAAYQEDK 370 >gi|326390151|ref|ZP_08211712.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter ethanolicus JW 200] gi|325993799|gb|EGD52230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter ethanolicus JW 200] Length = 364 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 142/372 (38%), Positives = 213/372 (57%), Gaps = 14/372 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDAR 77 + RV + MSGGVDSSV A LLK++G+DVIG+T++++ +A SCC+ + DA+ Sbjct: 4 NNRVAIGMSGGVDSSVAAYLLKKEGFDVIGLTMKVWVDHEAKAFDSDKSCCSLRATQDAK 63 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 +V + + V HY D+ E F + ++ F + Y G TP PCV CNR +KF +LL +LG Sbjct: 64 KVAEMLGVPHYTVDFSEVFYDKIVNYFINEYLKGRTPNPCVLCNRQIKFGELLEKAFELG 123 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A +ATGHY+R D+ +R ++ + +D +DQSY L+ TQ+QL FPLG+ KK Sbjct: 124 AYYIATGHYVRKDY---DEKTKRYLLKKGIDSSKDQSYVLYRLTQKQLEHALFPLGNYKK 180 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 E +R LA E+ L +A K +SQ+ICF+ Y +KR G+ ++G+ LG H Sbjct: 181 EEIRALAEELKLPVAKKPESQEICFIPDNDYSGFIKRQVKDEIKPGEFRDVHGKFLGYHK 240 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GII+YTIGQRRGLG++ PL+VV +D ++ V+VG +E + + N++ Sbjct: 241 GIIHYTIGQRRGLGLSSDRPLYVVDIDVKNNVVVVGHQEDVWGEELISSNNNFISI---- 296 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + K KIR + ++ +D V V F K + + GQ+ VFY D Sbjct: 297 EKLKREMKVTAKIRYTAKEEEAIIKPYEEDKVLVKFLKPQRAITPGQSVVFYDKDV---- 352 Query: 377 VLGGGIISGSKR 388 V+GGGII R Sbjct: 353 VVGGGIIEKKVR 364 >gi|325684365|gb|EGD26534.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 375 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 135/387 (34%), Positives = 191/387 (49%), Gaps = 25/387 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSKIRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TNDDGVCTATEDYEDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++V D I + +Y ++E+ + V F Y AG TP P + CN +KF L L Sbjct: 60 KKVADKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEIKFKSFLEYALDL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD LA GHY ++ + D M RP D +DQ+YFL TQ+Q+ + FPL D+ Sbjct: 120 DADYLAMGHYAKTMV----DENGVTHMMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQDLT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A E GL A K DS ICF+ + + + A GD+V +G+++G H Sbjct: 176 KPEVRRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLP--AQGGDMVTPDGKVVGHH 233 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G++ YTIGQR+GLG+ + P FVV D +++IV L R+ + Sbjct: 234 AGLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIVEQGYDSPRLYADRLQASGMT 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367 + ED FK K R Q V V V V F++ V GQA V Sbjct: 294 FFTGNPEEDT---EFKATAKFRYRQCDVGVTVKYHAASKTADVYFDEPARAVTPGQALVL 350 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEE 394 Y + LGGG I + + D + Sbjct: 351 YNGE----ECLGGGNIDAAFKDDKKLQ 373 >gi|91781835|ref|YP_557041.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia xenovorans LB400] gi|123359156|sp|Q145K0|MNMA_BURXL RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|91685789|gb|ABE28989.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia xenovorans LB400] Length = 381 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 127/392 (32%), Positives = 179/392 (45%), Gaps = 29/392 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 +VVV MSGGVDSSV A LLK GYDV+G+ ++ + S+ C QD D Sbjct: 2 SKQKVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R R + R + + +D +DQSYFL Q QL FPLG++ K Sbjct: 119 QTIATGHYARVR-----ENNGRFELLKALDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A ++ L A K DS ICF+ + + D + R G + G+++G H G Sbjct: 174 RVREIAEQIALPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTTEGKVVGEHIG 231 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT GQR+G+G+ GEP FV D S+ + V L H + +W Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAGKDIPSNTLYVAQGHDHPWLLSHTLSAGNTSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG---VYVDFEKSEVGVASGQACVF 367 + + DGF C K R Q P G ++F+ ++ V GQ+ V Sbjct: 292 VAG----EPPADGFACGAKTRYRQADAPCTFSSAGAGEGLFELNFDVAQWAVTPGQSAVL 347 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSV 399 Y D LGGGII + Sbjct: 348 YDGDV----CLGGGIIEHAVTGQPATRQPQKA 375 >gi|291522307|emb|CBK80600.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coprococcus catus GD/7] Length = 368 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 148/368 (40%), Positives = 200/368 (54%), Gaps = 15/368 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDARR 78 +VVV MSGGVDSSV A LLK+ GYDVIGVT+Q++ + G CC V DARR Sbjct: 4 KKVVVGMSGGVDSSVAAWLLKQQGYDVIGVTMQIWQEEEDEIVEENGGCCGLSAVDDARR 63 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + I + +YV ++ E FR VI F S Y G TP PC+ CNR VK+ LL LGA Sbjct: 64 VAERIGIPYYVMNFREVFREKVIDNFVSEYEKGRTPNPCIVCNRYVKWEALLEKALALGA 123 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R + + +DQ+Y L+ Q QL P+G K Sbjct: 124 DYIATGHYARIVHLP----NGRYAIEKAAFDRKDQTYALYNLNQHQLAHTLMPVGAYDKS 179 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E+GL +A+K DSQDICFV G Y ++ EGD V NG++LG H G Sbjct: 180 EVRRIAGEIGLSVANKMDSQDICFVSDGNYQAFIEDYTGKKLPEGDFVDKNGKVLGHHRG 239 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I YTIGQR+GL +AMG P+FV ++ +++I+G + L +Y +N + ++ Sbjct: 240 IGAYTIGQRKGLNLAMGHPVFVTGINPEENKIIIGENDELFQRALYASNVNLMSRASLDE 299 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 V + KIR + P ++ DG +YV F++ + + GQA V Y D V Sbjct: 300 PV----RLTAKIRYAHKAAPCIARQLPDGSLYVCFDEPQRAITPGQAVVLYDGD----LV 351 Query: 378 LGGGIISG 385 GGGII Sbjct: 352 AGGGIIEK 359 >gi|320540371|ref|ZP_08040021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Serratia symbiotica str. Tucson] gi|320029302|gb|EFW11331.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Serratia symbiotica str. Tucson] Length = 366 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 122/378 (32%), Positives = 195/378 (51%), Gaps = 28/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +V+V +SGGVDSSV A LL++ GY V G+ ++ + + C A D+ DA Sbjct: 3 DNSQKKVIVGISGGVDSSVTAYLLQQQGYQVAGLFMKNWEEDDDEE---YCSAAADLADA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQ 135 + VCD + + + ++ + + V F Y AG TP P + CN+ +KF L Sbjct: 60 QAVCDKLGIKLHTVNFAAEYWDNVFELFLEEYQAGRTPNPDILCNKEIKFKAFLEFAAED 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L AD +ATGHY+R + D + + R +D +DQSYFL+ + +Q+ FP+G++ Sbjct: 120 LDADFIATGHYVRRQ-----DVDGKSHLLRGIDSNKDQSYFLYTLSHEQVAQSLFPVGEL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 KK VR +A ++ L A K DS ICF+ + K+ D + R A G I ++GQ +G+ Sbjct: 175 KKPQVRCIAEQLALVTAKKKDSTGICFIGERKFRDFLGRYLP--AQPGLIASVDGQTVGK 232 Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ EP +VV D ++ ++V L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGMKDSSEEPWYVVDKDVANNMLVVAQGHDHPRLMSAGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366 ++W+ + F+C VK R Q + V DD + V F++ V GQ+ V Sbjct: 293 LHWVD----RMPRSEPFRCTVKTRYRQQDILCRVTPLDDQRIEVRFDEPVAAVTPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + LGGGII Sbjct: 349 FYQGEI----CLGGGIIE 362 >gi|71065801|ref|YP_264528.1| tRNA-specific 2-thiouridylase MnmA [Psychrobacter arcticus 273-4] gi|123648512|sp|Q4FSB4|MNMA_PSYA2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71038786|gb|AAZ19094.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Psychrobacter arcticus 273-4] Length = 408 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 131/397 (32%), Positives = 207/397 (52%), Gaps = 22/397 (5%) Query: 2 VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61 +A R +L NP V+V MSGGVDSSV A LL++ G+ V G+ ++ + + Sbjct: 14 AAFDAHRPLTLTYIDNPSTKHVIVGMSGGVDSSVSAVLLQQAGFVVEGLFMKNWEEDDGT 73 Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 + C A D+ DA+ VCD I + + ++ + + V F + Y AG TP P + CN Sbjct: 74 E---YCTAMDDLADAQAVCDKIGIKLHTANFAMEYWDRVFEHFLAEYKAGRTPNPDILCN 130 Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRL-YVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 + +KF L LGAD +ATGHY R + Y +DG + R +D +DQSYFL A Sbjct: 131 KEIKFKAFLDYALTLGADYIATGHYTRRSVNYKNNDGIEVAQLLRGLDNNKDQSYFLHAV 190 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 +L FP+G+++K VR +A E L A+K DS ICF+ + ++ D +++ A Sbjct: 191 GGDKLAKTLFPVGELEKPVVRQIAEEHDLITANKKDSTGICFIGERRFKDFLQQYLP--A 248 Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP- 294 +GDIV +G +G H+G++ YT+GQR G+G+ EP FV+ D +++R+IVG Sbjct: 249 QKGDIVTDDGINIGTHDGLMYYTLGQRGGIGIGGVKDRPEEPWFVLAKDLDNNRLIVGQG 308 Query: 295 --RESLEVHRIYLREINWLGDGLFEDA-VVDGFKCFVKIRSSQDPVPVF---VQRNDDGV 348 + + ++ +++W D ++G +C K R Q V + V Sbjct: 309 HEHPMMLSNELHAYKLDWTDGLPPTDIFSLEGLRCMAKSRYRQPDQACRVFAVNADGSEV 368 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385 V F++ + V GQ+ VFY + LGGG+I+ Sbjct: 369 RVIFDEPQRAVTPGQSAVFYIEEV----CLGGGVIAS 401 >gi|323702190|ref|ZP_08113857.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfotomaculum nigrificans DSM 574] gi|323532877|gb|EGB22749.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfotomaculum nigrificans DSM 574] Length = 366 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 139/370 (37%), Positives = 206/370 (55%), Gaps = 14/370 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDAR 77 +V+ AMSGGVDSSV AALL++ GY+V+GVT+Q+++ CC+ V DAR Sbjct: 4 KGKVIAAMSGGVDSSVTAALLQQQGYEVVGVTMQIWDPDVTVVDGDYVGCCSLSAVDDAR 63 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV + + + +YVF++ E F VI F Y G TP PC+ CNR +KF LL RQ+G Sbjct: 64 RVANILGIPYYVFNFRELFTEKVIQYFVDEYLRGRTPNPCIACNRFIKFEALLQKARQMG 123 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D +ATGHY R + +R + + D +DQ+Y L+ TQ Q+ PL D K Sbjct: 124 FDYIATGHYARLGYS---EEYKRYTVRKARDERKDQTYVLYGFTQDQIAHTLMPLADYTK 180 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 E VR++AR GL A K +SQ+ICFV Y + ++ + G + L G ++G+H Sbjct: 181 EQVREMARRWGLPTATKPESQEICFVHDNNYRNFLEERSVEGIKPGPFLDLKGNVIGQHR 240 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI YTIGQRRGLG+A GE ++VV +D + VIVGP E++ + + N++ Sbjct: 241 GIPFYTIGQRRGLGIATGERVYVVDIDPERNAVIVGPEEAIWGTELIASDNNFI----LY 296 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 D + + ++R + P P ++ ++G V V F+ + + GQA V+Y D Sbjct: 297 DKITGPTEVEAQVRYNSKPSPALLEPLENGLVKVTFKYPQRSITPGQAVVYYQGD----Y 352 Query: 377 VLGGGIISGS 386 ++GGG I S Sbjct: 353 LVGGGTIEKS 362 >gi|300690463|ref|YP_003751458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia solanacearum PSI07] gi|299077523|emb|CBJ50149.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia solanacearum PSI07] Length = 370 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 128/378 (33%), Positives = 187/378 (49%), Gaps = 27/378 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RVVV MSGGVDSSV A LLK+ GY+V+G+ ++ + S+ C QD D Sbjct: 2 SGKRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I V ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADLIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R G R + + D +DQSYFL Q QLC FPLG++ K Sbjct: 119 DTIATGHYARVREVDG-----RFELLKAFDHTKDQSYFLHRLNQAQLCRTLFPLGEIPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A E+GL A K DS ICF+ + + D + R G I + + +G+H G Sbjct: 174 RVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPIKTPDDKTIGQHIG 231 Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT+GQR+G+G+ G+ +V D ++ + V L H ++ +++W Sbjct: 232 LAFYTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + +G + K R Q P V R G + + F +++ V GQ+ V Y Sbjct: 292 VAGH----PPAEGTQLAAKTRYRQTDAPCAVTRAAGGALTLTFPQAQWAVTPGQSAVLYD 347 Query: 370 SDSNEARVLGGGIISGSK 387 D LGGGII+ ++ Sbjct: 348 GDV----CLGGGIIASTE 361 >gi|58337130|ref|YP_193715.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus acidophilus NCFM] gi|227903706|ref|ZP_04021511.1| tRNA-methyltransferase [Lactobacillus acidophilus ATCC 4796] gi|73920126|sp|Q5FKU0|MNMA_LACAC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|58254447|gb|AAV42684.1| tRNA-methyltransferase [Lactobacillus acidophilus NCFM] gi|227868593|gb|EEJ76014.1| tRNA-methyltransferase [Lactobacillus acidophilus ATCC 4796] Length = 375 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 128/384 (33%), Positives = 189/384 (49%), Gaps = 25/384 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSKIRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TDDSGVCTATEDYEDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++V D I + +Y ++E+ + + V F Y G TP P V CN +KF L L Sbjct: 60 KKVADKIGIPYYSINFEKEYWHRVFEYFLDEYKKGRTPNPDVMCNSQIKFKSFLEFAMDL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY ++ D M RP D +DQ+YFL +Q Q+ + FPL ++ Sbjct: 120 DADYIAMGHYAKTIT----DANGVTHMMRPKDGNKDQTYFLSQLSQDQIKKVIFPLANLT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + A G +V G+++G H Sbjct: 176 KPQVREIALANGLVTAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPEGKVVGEH 233 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G++ YTIGQR+GLG+ + P FVV D + +IV L R+ +++ Sbjct: 234 AGLMYYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSPLLYASRLKASDMS 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367 + D C K R Q + V V +D+ V V F++ V GQA V Sbjct: 294 FFTGKPDHDF---EMHCTAKFRYRQCDIGVTVKYHADDNTVDVYFDEPARAVTPGQALVL 350 Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391 Y + +GGG I + + D Sbjct: 351 YNGE----ECIGGGNIDAAFQEDK 370 >gi|134280393|ref|ZP_01767104.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 305] gi|226198381|ref|ZP_03793950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei Pakistan 9] gi|134248400|gb|EBA48483.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 305] gi|225929564|gb|EEH25582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei Pakistan 9] Length = 377 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 126/391 (32%), Positives = 180/391 (46%), Gaps = 32/391 (8%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83 +V MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D I Sbjct: 1 MVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVADLI 57 Query: 84 NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143 + ++ +++ V F Y+AG TP P V CN +KF L LGA +AT Sbjct: 58 GIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTIAT 117 Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 GHY R R G R + + D +DQSYFL Q QL FPLG++ K VR++ Sbjct: 118 GHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVREI 172 Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263 A ++GL A K DS ICF+ + + D + R G + +G+ +G H G+ YT Sbjct: 173 AAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAFYT 230 Query: 264 IGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315 GQR+G+G+ GEP FV D S+ + V L + ++W+ Sbjct: 231 FGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG-- 288 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + DG +C K R Q P Q D+ + F++ + V GQ+ V Y D Sbjct: 289 --EPPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWAVTPGQSAVLYDGD 346 Query: 372 SNEARVLGGGIIS--GSKRSDAVEESLLSVI 400 LGGGII + R+ + Sbjct: 347 V----CLGGGIIESAATGRAGTAPAGRAPAL 373 >gi|93005976|ref|YP_580413.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Psychrobacter cryohalolentis K5] gi|122415456|sp|Q1QBM4|MNMA_PSYCK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|92393654|gb|ABE74929.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Psychrobacter cryohalolentis K5] Length = 408 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 132/396 (33%), Positives = 207/396 (52%), Gaps = 23/396 (5%) Query: 3 VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62 L D++ +P V+V MSGGVDSSV A LL++ G+ V G+ ++ + ++ Sbjct: 16 FDAHRPLTLADIN-DPSTKHVIVGMSGGVDSSVSAVLLQQAGFMVEGLFMKNWEEDDGTE 74 Query: 63 RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122 C A D+ DA+ VCD I + + ++ + + V F + Y AG TP P + CN+ Sbjct: 75 ---YCTAMDDLADAQAVCDKIGIKLHTANFAMEYWDRVFEHFLAEYKAGRTPNPDILCNK 131 Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRL-YVGDDGKRRRIMCRPMDLERDQSYFLFATT 181 +KF L LGAD +ATGHY R + Y +DG + R +D +DQSYFL A Sbjct: 132 EIKFKAFLDYALTLGADYIATGHYTRRSVNYKNNDGIEVAQLLRGLDNNKDQSYFLHAVG 191 Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 +L FP+G++KK VR +A E L A+K DS ICF+ + ++ D +++ A Sbjct: 192 GDKLAKTLFPVGELKKPVVRQIAEEHDLITANKKDSTGICFIGERRFKDFLQQYLP--AQ 249 Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRE 296 +GDIV +G +G H+G++ YT+GQR G+G+ EP FV+ D +++R+IVG Sbjct: 250 KGDIVTDDGITIGTHDGLMYYTLGQRGGIGIGGVKDRPEEPWFVLAKDLDNNRLIVGQGH 309 Query: 297 S---LEVHRIYLREINWLGDGLFEDA-VVDGFKCFVKIRSSQDPVPVFVQRNDDG---VY 349 + + + +++W+ D DG +C K R Q V N++ V Sbjct: 310 EHAMMLSNELQAYKLDWVDVLPPADIFSEDGLRCMAKSRYRQPDQACTVFANNENGSEVR 369 Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385 V F++ + V GQ+ VFY + LGGG+I+ Sbjct: 370 VVFDEPQRAVTPGQSAVFYIDEV----CLGGGVIAS 401 >gi|295091002|emb|CBK77109.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium cf. saccharolyticum K10] Length = 359 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 133/368 (36%), Positives = 199/368 (54%), Gaps = 14/368 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDA 76 + +VVV MSGGVDSSV A LLK+ GYDVIGVT+Q++ + + G CC V DA Sbjct: 2 EKKKVVVGMSGGVDSSVAAWLLKKQGYDVIGVTMQIWQDEEPEAVEENGGCCGLSAVDDA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV + + + +YV ++++ FR V+ F + Y G TP PC+ CNR VK+ LL + ++ Sbjct: 62 RRVAEDLAIPYYVMNFKKEFRENVMDYFVAEYLRGRTPNPCIACNRFVKWESLLKRSLEI 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R R + + +DQ+Y L+ TQ+QL P+G+ Sbjct: 122 GADYIATGHYARIEKLP----NGRYALKKSATAAKDQTYALYNLTQEQLAHTLMPVGEYT 177 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ +R +A+E+ L +A K DSQ+ICF+ Y ++ EG+ V L G +LGRH Sbjct: 178 KDEIRKMAQELNLRVAHKPDSQEICFIPDNDYARFIREDIGKELPEGNFVDLQGNVLGRH 237 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GI +YT+GQR+GL ++MG P+FVV + ++ V++G + + INW+ Sbjct: 238 KGITHYTVGQRKGLNLSMGHPVFVVEIRPETNEVVIGENSDVFSRTLRFNRINWMAVDGL 297 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + + KIR P V+ D F++ + + GQA V Y + Sbjct: 298 HG---EEHRFIAKIRYGHKGAPCTVREIGSDLAECVFDEPQRAITPGQAVVLYDGE---- 350 Query: 376 RVLGGGII 383 V GGG I Sbjct: 351 YVAGGGTI 358 >gi|283795899|ref|ZP_06345052.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium sp. M62/1] gi|291076535|gb|EFE13899.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium sp. M62/1] Length = 359 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 133/368 (36%), Positives = 199/368 (54%), Gaps = 14/368 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDA 76 + +VVV MSGGVDSSV A LLK+ GYDVIGVT+Q++ + + G CC V DA Sbjct: 2 EKKKVVVGMSGGVDSSVAAWLLKKQGYDVIGVTMQIWQDEEPEAVEENGGCCGLSAVDDA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV + + + +YV ++++ FR V+ F + Y G TP PC+ CNR VK+ LL + ++ Sbjct: 62 RRVAEDLAIPYYVMNFKKEFRENVMDYFVAEYLRGRTPNPCIACNRFVKWESLLKRSLEI 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R R + + +DQ+Y L+ TQ+QL P+G+ Sbjct: 122 GADYIATGHYARIEKLP----NGRYALKKSATAAKDQTYALYNLTQEQLAHTLMPVGEYT 177 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ +R +A+E+ L +A K DSQ+ICF+ Y ++ EG+ V L G +LGRH Sbjct: 178 KDEIRKMAQELNLRVAHKPDSQEICFIPDNDYAKFIREDIGKELPEGNFVDLQGNVLGRH 237 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GI +YT+GQR+GL ++MG P+FVV + ++ V++G + + INW+ Sbjct: 238 KGITHYTVGQRKGLNLSMGHPVFVVEIRPETNEVVIGENSDVFSRTLRFNRINWMAVDGL 297 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + + KIR P V+ D F++ + + GQA V Y + Sbjct: 298 HG---EEHRFIAKIRYGHKGAPCTVREIGSDLAECVFDEPQRAITPGQAVVLYDGE---- 350 Query: 376 RVLGGGII 383 V GGG I Sbjct: 351 YVAGGGTI 358 >gi|182418877|ref|ZP_02950134.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium butyricum 5521] gi|237667388|ref|ZP_04527372.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182377160|gb|EDT74728.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium butyricum 5521] gi|237655736|gb|EEP53292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 360 Score = 474 bits (1221), Expect = e-131, Method: Composition-based stats. Identities = 133/369 (36%), Positives = 208/369 (56%), Gaps = 15/369 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDAR 77 +V++ MSGGVDSSV A LLK GY+VIG T+Q++ K +R+G CC+ V DAR Sbjct: 3 SKKKVLIGMSGGVDSSVAAYLLKEQGYEVIGATMQIWQEDKEFEEREGGCCSLSAVEDAR 62 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RVCD + + YV ++ + F+ VI PF Y G TP PC++CN+ +KF +LL R +G Sbjct: 63 RVCDKLGIPFYVLNFRDYFKEKVIEPFIQEYMDGRTPNPCIECNKHLKFDELLRRARGIG 122 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY + ++ R ++ R D +DQ+Y L+ TQ QL P G +K Sbjct: 123 ADYVATGHYAKI-----EERDGRYLLIRSDDDSKDQTYALYNFTQDQLAHTLMPCGAYEK 177 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 +R++A+E+GL + +K DS++ICF+ + + G+ V G +LG+H Sbjct: 178 TKIREIAKEIGLAVHNKKDSEEICFISDNNHGKYISEARPSRVKPGNFVDKEGNVLGKHK 237 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI+ YTIGQR+GLG+++G P+FV ++ ++ VI+G + + + + ++N++ Sbjct: 238 GIVYYTIGQRKGLGLSLGRPVFVTGINAKTNEVIIGSEDEIFKNDLIATDVNFISF---- 293 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 D + KIR S P + +G V V F+ + + GQ+ VFY + Sbjct: 294 DKLEGELNVQAKIRYSARPAEAIIYPLPNGKVKVSFKDKQRAITKGQSVVFYDKEV---- 349 Query: 377 VLGGGIISG 385 V+GGGII Sbjct: 350 VVGGGIIES 358 >gi|238855258|ref|ZP_04645577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus jensenii 269-3] gi|260664617|ref|ZP_05865469.1| tRNA methyl transferase [Lactobacillus jensenii SJ-7A-US] gi|282932449|ref|ZP_06337874.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus jensenii 208-1] gi|313471923|ref|ZP_07812415.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus jensenii 1153] gi|238832150|gb|EEQ24468.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus jensenii 269-3] gi|239529151|gb|EEQ68152.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus jensenii 1153] gi|260561682|gb|EEX27654.1| tRNA methyl transferase [Lactobacillus jensenii SJ-7A-US] gi|281303398|gb|EFA95575.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus jensenii 208-1] Length = 375 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 131/393 (33%), Positives = 192/393 (48%), Gaps = 29/393 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSKIRVVVGMSGGVDSSVSALLLKEAGYDVVGVFMKNWDD---TDDAGVCTATEDYEDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +RV D I + +Y ++E+ + V F S Y G TP P + CN +KF L L Sbjct: 60 KRVADKIGIPYYSINFEKEYWQRVFEYFLSEYKKGRTPNPDIMCNTEIKFKSFLEFAMSL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY ++ D M RP D +DQ+YFL +Q+Q+ + FPL ++ Sbjct: 120 DADYIAMGHYAKTVK----DANGVTHMMRPKDGNKDQTYFLSQLSQEQIKHVIFPLANLT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A + GL A K DS ICF+ + + + A G +V +G ++G+H Sbjct: 176 KPQVREIAEKAGLATAKKKDSTGICFIGERNFKKFLSEFLP--AKPGKMVTPDGNVVGQH 233 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G++ YTIGQR+GLG+ + P FVV D + +IV L + ++ Sbjct: 234 GGLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLKKNELIVEQGYDSPRLYATSLKASGMS 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND--DGVYVDFEKSEVGVASGQACVF 367 + D F C K R Q V V V+ + V F++ V GQA V Sbjct: 294 FYTGNPDHD---VEFDCTAKFRYRQADVGVHVKYHAATKTCDVYFDEPARAVTPGQALVL 350 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400 Y + LGGG I + + EE L ++ Sbjct: 351 YKGE----ECLGGGNIDAAYQ----EEKQLQLV 375 >gi|167765590|ref|ZP_02437654.1| hypothetical protein CLOSS21_00084 [Clostridium sp. SS2/1] gi|167712775|gb|EDS23354.1| hypothetical protein CLOSS21_00084 [Clostridium sp. SS2/1] Length = 363 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 145/365 (39%), Positives = 204/365 (55%), Gaps = 16/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK+ GYDVIGVT+Q++ + G CC V DARRV Sbjct: 4 KVVVGMSGGVDSSVAAYLLKKQGYDVIGVTMQIWQEEDEFVQEENGGCCGLSAVDDARRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 I + HYV ++ + F++ VI F Y TP PC+ CNR VK+ LL +GAD Sbjct: 64 AQMIGIPHYVMNFRKDFKDKVIDYFCEEYLNARTPNPCIACNRYVKWESLLKRCLDIGAD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + R + ++DQ+Y L+ TQ QL P+G K+ Sbjct: 124 YIATGHYSQITKLD----NGRYALKCSKTQKKDQTYALYNLTQNQLSKTLMPIGAYTKDE 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E+GL +A+K DSQDICFV Y + ++ +G+ V G +LG H GI Sbjct: 180 VRQIAEEIGLLVANKPDSQDICFVDD-NYGEFIEETTGTKIPKGNFVDPEGNVLGEHKGI 238 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 I YT+GQRRGLG+++ +P +V+ +DK+++ V+VG ++ L + +Y ++N + FED Sbjct: 239 IYYTVGQRRGLGLSLKKPGYVIKVDKDTNEVVVGDKQDLFANVLYGNKVNCMSVPEFED- 297 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 G K KIR + VP V +D V V F++ + + GQA VFY D V Sbjct: 298 ---GMKLMAKIRYNSPEVPCRVYMTGEDEVRVVFDEPQRAITPGQAVVFYDGDI----VA 350 Query: 379 GGGII 383 GG I Sbjct: 351 GGATI 355 >gi|315038064|ref|YP_004031632.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus amylovorus GRL 1112] gi|325956515|ref|YP_004291927.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus acidophilus 30SC] gi|312276197|gb|ADQ58837.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus amylovorus GRL 1112] gi|325333080|gb|ADZ06988.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus acidophilus 30SC] gi|327183344|gb|AEA31791.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus amylovorus GRL 1118] Length = 375 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 128/384 (33%), Positives = 188/384 (48%), Gaps = 25/384 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSKIRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TDDAGVCTATEDYEDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++V D I + +Y ++E+ + + V F + Y G TP P V CN +KF L L Sbjct: 60 KKVADKIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLEFAMDL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY ++ D M RP D +DQ+YFL Q Q+ + FPL ++ Sbjct: 120 DADYIAMGHYAKTVK----DANGVTHMMRPKDGNKDQTYFLSQLNQDQIKKVIFPLANLT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + A G +V +G+++G H Sbjct: 176 KPQVREIALANGLATAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGKVVGEH 233 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G++ YTIGQR+GLG+ + P FVV D + +IV L R+ +++ Sbjct: 234 AGLMYYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSPLLYASRLKASDMS 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367 + D C K R Q + V V D+ V F++ V GQA V Sbjct: 294 FFTGKPDHDF---EMHCSAKFRYRQCDIGVTVKYHAADNTADVYFDEPARAVTPGQALVL 350 Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391 Y + LGGG I + + D Sbjct: 351 YNGE----ECLGGGNIDAAYQEDK 370 >gi|260588149|ref|ZP_05854062.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Blautia hansenii DSM 20583] gi|260541676|gb|EEX22245.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Blautia hansenii DSM 20583] Length = 361 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 140/368 (38%), Positives = 205/368 (55%), Gaps = 15/368 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDA 76 +VVV +SGGVDSSV A LLK+ GYDVIGVT+Q++ + G CC V DA Sbjct: 2 SGKKVVVGLSGGVDSSVAAYLLKKQGYDVIGVTMQIWQEEDNEFQEENGGCCGLSAVDDA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV +++ +YV ++ + F+ VI F Y G TP PC+ CNR VK+ LL + + Sbjct: 62 RRVAQILDIPYYVMNFRKEFKEKVIDYFNQEYLEGRTPNPCIACNRYVKWESLLKRSLDI 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R R + + ++DQ+Y L+ TQ+QL P+G+ Sbjct: 122 GADYIATGHYARVEQLP----NGRYAIRNSVTAKKDQTYALYNLTQEQLSRTLMPVGEYT 177 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 KE +R +A+E GL +A K DSQ+ICFV Y ++ EG+ V +G ++G+H Sbjct: 178 KEEIRRIAQEAGLPVAHKKDSQEICFVPDNDYAGFIEESTGKKLEEGNYVLEDGTVIGKH 237 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GII+YTIGQR+GL ++MG P+FV + +++ V++G E L V + +N++ Sbjct: 238 KGIIHYTIGQRKGLNLSMGHPVFVTEIRPDTNEVVIGENEDLFVTDLICDRVNFMAIDHL 297 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375 E +G + KIR + ++ +G V V F +S+ V GQA VFY + Sbjct: 298 E----EGKEFTAKIRYNHPGAVCTLEDLGEGKVKVLFRESQRAVTPGQAVVFYDGE---- 349 Query: 376 RVLGGGII 383 V GGGII Sbjct: 350 YVAGGGII 357 >gi|91776467|ref|YP_546223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacillus flagellatus KT] gi|123254088|sp|Q1GZF5|MNMA_METFK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|91710454|gb|ABE50382.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylobacillus flagellatus KT] Length = 360 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 121/376 (32%), Positives = 185/376 (49%), Gaps = 27/376 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +V+V MSGGVDSSV A LLK GY+V+G+ ++ + + C A QD+ DA V Sbjct: 2 KKKVIVGMSGGVDSSVAALLLKEQGYEVVGLFMKNWEDDDTDE---YCPAKQDLIDAAAV 58 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + ++ + ++ V F Y+AG TP P + CN +KF L LG D Sbjct: 59 ADKIGIELEAVNFSKEYKERVFANFLEEYSAGRTPNPDILCNSEIKFKAFLDHAMALGGD 118 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ATGHY + R + + + D +DQSYFL+ Q QL FPLG + K Sbjct: 119 LMATGHYAQVR-----EKNGLFQLMKADDGTKDQSYFLYRLNQAQLSKTLFPLGHLLKRE 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +RD+AR GL ++K DS ICF+ + + + + R G+I G+++G+H+G+ Sbjct: 174 IRDIARRAGLPTSEKKDSTGICFIGERPFQEFLSRYLPRA--PGEIQTPEGKVVGQHHGL 231 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + YT+GQR+GLG+ GEP FV D + +IV L + ++W+ Sbjct: 232 MYYTMGQRQGLGIGGSKDSNGEPWFVAGKDMQRNVLIVVQGHDHPLLLNDGLIADNLHWI 291 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 + + K R Q P + R D G + F + + GQ+ V Y S Sbjct: 292 AG----EEPKTHWVYAAKTRYRQPDAPCEIDRLDSGTAEIRFGHKQWAITPGQSVVVYES 347 Query: 371 DSNEARVLGGGIISGS 386 + LGGGII+ + Sbjct: 348 NV----CLGGGIITSA 359 >gi|104773839|ref|YP_618819.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|123077302|sp|Q1GAS1|MNMA_LACDA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|103422920|emb|CAI97582.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 375 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 136/387 (35%), Positives = 191/387 (49%), Gaps = 25/387 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSKIRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TNDDGVCTATEDYEDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++V D I + +Y ++E+ + V F Y AG TP P + CN VKF L L Sbjct: 60 KKVADKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEVKFKSFLEYALDL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD LA GHY ++ + D M RP D +DQ+YFL TQ+Q+ + FPL D+ Sbjct: 120 DADYLAMGHYAKTMV----DENGVTHMMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQDLT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A E GL A K DS ICF+ + + + A GD+V +G+++G H Sbjct: 176 KPEVRRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLP--AQGGDMVTPDGKVVGHH 233 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G++ YTIGQR+GLG+ + P FVV D +++IV L R+ + Sbjct: 234 AGLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIVEQGYDSPRLYADRLQASGMT 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367 + ED FK K R Q V V V V F++ V GQA V Sbjct: 294 FFTGNPEEDT---EFKATAKFRYRQCDVGVTVKYHAASKTADVYFDEPARAVTPGQALVL 350 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEE 394 Y + LGGG I + + D + Sbjct: 351 YNGE----ECLGGGNIDAAFKDDKKLQ 373 >gi|169632892|ref|YP_001706628.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii SDF] gi|229486328|sp|B0VUD6|MNMA_ACIBS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|169151684|emb|CAP00474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter baumannii] Length = 377 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 121/379 (31%), Positives = 200/379 (52%), Gaps = 23/379 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ V Sbjct: 2 QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAV 58 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + + ++ + + V F + YAAG TP P + CN+ +KF L LGAD Sbjct: 59 ADKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGAD 118 Query: 140 VLATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R+ G+ + R +D +DQ+YFL A +++ FP+G+++K Sbjct: 119 FIATGHYARRAETAYNSKGEAYAPLLRGLDNNKDQTYFLHAVHGREINKTLFPVGEIEKP 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E+ L A K DS ICF+ + ++ D +K+ A G IV NG+ +G H+G Sbjct: 179 EVRRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDNGKEVGEHHG 236 Query: 259 IINYTI-----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 ++ YT+ G+ A FV++ D ++R++VG ++ +++ I+W Sbjct: 237 LMYYTLGQRGGIGLGGMKGASEGAWFVLHKDVTNNRLVVGQGHDHPLMQSTQLWSESIDW 296 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD---GVYVDFEKSEVGVASGQACVF 367 + ++ +G +C K R Q V +++ GV V+F++ + V GQ+ VF Sbjct: 297 VAGE--QNIPAEGLRCTAKTRYRQPDQACTVFIDENSEHGVRVEFDEPQRAVTPGQSVVF 354 Query: 368 YTSDSNEARVLGGGIISGS 386 Y+ + LGGG+I + Sbjct: 355 YSDEV----CLGGGVIHHT 369 >gi|51893527|ref|YP_076218.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Symbiobacterium thermophilum IAM 14863] gi|81388362|sp|Q67LS2|MNMA_SYMTH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|51857216|dbj|BAD41374.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Symbiobacterium thermophilum IAM 14863] Length = 390 Score = 474 bits (1220), Expect = e-131, Method: Composition-based stats. Identities = 138/375 (36%), Positives = 196/375 (52%), Gaps = 15/375 (4%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK----GSCCAGQD 72 P RV++AMSGGVDSSV AALL GY+VIGVT+ + + + CC+ Sbjct: 24 RPVAKRVLMAMSGGVDSSVAAALLVEQGYEVIGVTMNTWTDDIPEEIQMNQHSGCCSLAA 83 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 V DAR V + + +YV +++ +F VI F Y G TP PC+ CNR VKFS L Sbjct: 84 VEDARSVAHKLGIPYYVMNFQGQFARTVIDYFIEEYTRGRTPNPCIACNRYVKFSAFLEK 143 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 +QL D +ATGHY + D R ++ + D +DQ+Y L TQ+ L FP+ Sbjct: 144 AKQLECDYVATGHYA--VIGQDDRFPGRWLLGKSADARKDQTYVLHNLTQEALAHTLFPV 201 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G ++K VR LA + G ADK DSQ+ICFV Y +K + G I++ G++ Sbjct: 202 GHLQKSEVRALAAKYGFVTADKPDSQEICFVYDNDYGRFLKERAPEAIVPGPILNTRGEV 261 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G+H G+ YTIGQR+GLG+ P++VV LD + VIVG E + ++NW+ Sbjct: 262 IGQHQGLPLYTIGQRKGLGLTTPRPVYVVDLDVERNAVIVGEDEETYRGGLVASDLNWIA 321 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 + +C KIR + +D V V+F++ + + GQA VFY D Sbjct: 322 I----PGLTFPRRCRAKIRRMAPEAECTIYPIGEDAVRVEFDRPQRAITPGQAVVFYDGD 377 Query: 372 SNEARVLGGGIISGS 386 VLGGG I + Sbjct: 378 ----WVLGGGTIERA 388 >gi|317498544|ref|ZP_07956838.1| tRNA methyl transferase [Lachnospiraceae bacterium 5_1_63FAA] gi|316894237|gb|EFV16425.1| tRNA methyl transferase [Lachnospiraceae bacterium 5_1_63FAA] Length = 363 Score = 473 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 145/365 (39%), Positives = 204/365 (55%), Gaps = 16/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK+ GYDVIGVT+Q++ + G CC V DARRV Sbjct: 4 KVVVGMSGGVDSSVAAYLLKKQGYDVIGVTMQIWQEEDEFVQEENGGCCGLSAVDDARRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 I + HYV ++ + F++ VI F Y TP PC+ CNR VK+ LL +GAD Sbjct: 64 AQMIGIPHYVMNFRKDFKDKVIDYFCEEYLNARTPNPCIACNRYVKWESLLKRCLDIGAD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + R + ++DQ+Y L+ TQ QL P+G K+ Sbjct: 124 YIATGHYSQITKLD----NGRYALKCSKTQKKDQTYALYNLTQNQLSKTLMPIGAYTKDE 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E+GL +A+K DSQDICFV Y + ++ +G+ V G +LG H GI Sbjct: 180 VRQIAEEIGLLVANKPDSQDICFVDD-NYGEFIEETTGTKIPKGNFVDPEGNVLGEHKGI 238 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 I YT+GQRRGLG+++ +P +V+ +DK+++ V+VG ++ L + +Y ++N + FED Sbjct: 239 IYYTVGQRRGLGLSLKKPGYVIKVDKDTNEVVVGDKQDLFANVLYGNKVNCMSVPEFED- 297 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 G K KIR + VP V +D V V F++ + + GQA VFY D V Sbjct: 298 ---GMKLMAKIRYNSPEVPCRVYMTGEDEVRVVFDEPQRAITPGQAVVFYDGDI----VA 350 Query: 379 GGGII 383 GG I Sbjct: 351 GGATI 355 >gi|187933232|ref|YP_001885369.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum B str. Eklund 17B] gi|205813703|sp|B2THM7|MNMA_CLOBB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|187721385|gb|ACD22606.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum B str. Eklund 17B] Length = 361 Score = 473 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 135/368 (36%), Positives = 210/368 (57%), Gaps = 15/368 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARR 78 +V+V MSGGVDSSV A LLK GY+VIG T+Q++ K +R+G CC+ V DARR Sbjct: 5 KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGATMQIWQEDKEVEEREGGCCSLSAVEDARR 64 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD +++ YV ++ + F+ VI PF Y G TP PC++CN+ +KF +LL + +G Sbjct: 65 VCDKLDIPFYVLNFRDSFKKKVIEPFIQEYIDGRTPNPCIECNKHLKFDELLRKAQGIGV 124 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + D R ++ R D +DQ+Y L+ TQ QL P G+ K+ Sbjct: 125 DYIATGHYAKI-----DKKDDRYMLIRSDDDRKDQTYALYNFTQDQLAHTLMPCGEYTKD 179 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A+E+GL + +K DS++ICF+ + + G G+ V +G ILG+H G Sbjct: 180 RIREIAKEIGLAVHNKKDSEEICFISDNDHGKYILNAKPGAVKSGNFVDKSGNILGKHKG 239 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I+ YTIGQR+GLG+++G P+FV ++ ++ V++G E + + ++N++ D Sbjct: 240 IVYYTIGQRKGLGLSVGRPVFVTDINPKTNEVVIGAEEDIFKTELIAGDLNFITF----D 295 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + KIR S P + DG V V F + + + GQ+ VFY + V Sbjct: 296 KLEKEIEVEAKIRYSARPGKATIVPLKDGRVKVVFNEKQRAITKGQSVVFYNGNI----V 351 Query: 378 LGGGIISG 385 +GGG+I Sbjct: 352 IGGGVIEA 359 >gi|169795184|ref|YP_001712977.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii AYE] gi|213158152|ref|YP_002320203.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter baumannii AB0057] gi|215482732|ref|YP_002324930.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter baumannii AB307-0294] gi|239501147|ref|ZP_04660457.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter baumannii AB900] gi|260556664|ref|ZP_05828882.1| tRNA methyl transferase [Acinetobacter baumannii ATCC 19606] gi|294837181|ref|ZP_06781864.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter sp. 6013113] gi|294860682|ref|ZP_06798451.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter sp. 6013150] gi|301346855|ref|ZP_07227596.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii AB056] gi|301511134|ref|ZP_07236371.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii AB058] gi|301596413|ref|ZP_07241421.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii AB059] gi|205811029|sp|B0VBY5|MNMA_ACIBY RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205815008|sp|A3M7G3|MNMA_ACIBT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|226704765|sp|B7GZ21|MNMA_ACIB3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|226704766|sp|B7I4K8|MNMA_ACIB5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|169148111|emb|CAM85974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter baumannii AYE] gi|213057312|gb|ACJ42214.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter baumannii AB0057] gi|213987036|gb|ACJ57335.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter baumannii AB307-0294] gi|260409923|gb|EEX03223.1| tRNA methyl transferase [Acinetobacter baumannii ATCC 19606] Length = 377 Score = 473 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 121/379 (31%), Positives = 200/379 (52%), Gaps = 23/379 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ V Sbjct: 2 QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAV 58 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + + ++ + + V F + YAAG TP P + CN+ +KF L LGAD Sbjct: 59 ADKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGAD 118 Query: 140 VLATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R+ G+ + R +D +DQ+YFL A +++ FP+G+++K Sbjct: 119 FIATGHYARRAETAYNSKGEAYAPLLRGLDNNKDQTYFLHAVHGREINKTLFPVGEIEKP 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E+ L A K DS ICF+ + ++ D +K+ A G IV NG+ +G H+G Sbjct: 179 EVRRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDNGKEVGEHHG 236 Query: 259 IINYTI-----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 ++ YT+ G+ A FV++ D ++R++VG ++ +++ I+W Sbjct: 237 LMYYTLGQRGGIGLGGMKGASEGAWFVLHKDVANNRLVVGQGHDHPLMQSTQLWSEAIDW 296 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD---GVYVDFEKSEVGVASGQACVF 367 + ++ +G +C K R Q V +++ GV V+F++ + V GQ+ VF Sbjct: 297 VAGE--QNIPAEGLRCTAKTRYRQPDQACTVFIDENSEHGVRVEFDEPQRAVTPGQSVVF 354 Query: 368 YTSDSNEARVLGGGIISGS 386 Y+ + LGGG+I + Sbjct: 355 YSDEV----CLGGGVIHHT 369 >gi|313123455|ref|YP_004033714.1| tRNA-specific 2-thiouridylase mnma [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280018|gb|ADQ60737.1| tRNA-specific 2-thiouridylase mnmA [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 375 Score = 473 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 135/387 (34%), Positives = 191/387 (49%), Gaps = 25/387 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSKIRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TNDDGVCTATEDYEDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++V D I + +Y ++E+ + V F Y AG TP P + CN +KF L L Sbjct: 60 KKVADKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEIKFKSFLEYALAL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD LA GHY ++ + D M RP D +DQ+YFL TQ+Q+ + FPL D+ Sbjct: 120 DADYLAMGHYAKTMV----DENGVTHMMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQDLT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A E GL A K DS ICF+ + + + A GD+V +G+++G H Sbjct: 176 KPEVRRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLP--AQGGDMVTPDGKVVGHH 233 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G++ YTIGQR+GLG+ + P FVV D +++IV L R+ + Sbjct: 234 AGLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIVEQGYDSPRLYADRLQASGMT 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367 + ED FK K R Q V V V V F++ V GQA V Sbjct: 294 FFTGNPEEDT---EFKATAKFRYRQCDVGVTVKYHAASKTADVYFDEPARAVTPGQALVL 350 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEE 394 Y + LGGG I + + D + Sbjct: 351 YNGE----ECLGGGNIDDAFKDDKKLQ 373 >gi|18310765|ref|NP_562699.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium perfringens str. 13] gi|18145446|dbj|BAB81489.1| probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium perfringens str. 13] Length = 350 Score = 473 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 137/361 (37%), Positives = 207/361 (57%), Gaps = 15/361 (4%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARRVCDTINV 85 MSGGVDSSV A LLK GYDVIGVT+Q++ K +R+G CC+ V DARRV +++ Sbjct: 1 MSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEDKEYEEREGGCCSLSAVDDARRVAQKLDI 60 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145 YV ++ + F+ VI F Y G TP PC+ CN+ +KF +LL + +GAD +ATGH Sbjct: 61 PFYVLNFRDSFKRNVIDYFVDEYIQGRTPNPCIACNKYLKFDELLQKAKGIGADYVATGH 120 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y + ++ R + R D +DQ+Y L+ TQ+QL P G+ K+ +R++A+ Sbjct: 121 YAKI-----EERDGRFQLIRSKDDRKDQTYALYNLTQEQLEHTLMPCGEFTKDKIREIAK 175 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 E+GLD+ +K DS++ICF+ + + G+ V G +LG+H GI+ YTIG Sbjct: 176 EIGLDVHNKKDSEEICFIPDNNHGRYICEAAPNKVRPGNFVDKYGNVLGKHKGIVYYTIG 235 Query: 266 QRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFK 325 QR+GLG+A+G P+FV ++ ++ V+VGP E + + ++IN++ D + + Sbjct: 236 QRKGLGLALGRPVFVTDINPVTNTVVVGPEEDIFKTDLVCKDINFISI----DKLEGPME 291 Query: 326 CFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 KIR S P + ++G V V FE + + GQ+ VFY D V+GGGII Sbjct: 292 VEAKIRYSARPAKATISPMENGRVKVSFEDKQRAITKGQSVVFYKDD----LVVGGGIIE 347 Query: 385 G 385 Sbjct: 348 S 348 >gi|73542506|ref|YP_297026.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia eutropha JMP134] gi|123624143|sp|Q46XF1|MNMA_RALEJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|72119919|gb|AAZ62182.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia eutropha JMP134] Length = 362 Score = 473 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 126/378 (33%), Positives = 185/378 (48%), Gaps = 26/378 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ + S+ C QD D Sbjct: 2 SGKRVVVGMSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSE---YCSTRQDWLDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I V ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADLIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R R + R + + +D +DQSYFL Q QL FPLG++ K Sbjct: 119 ETIATGHYARVRQ----NAAGRFELLKALDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKT 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A E+GL A K DS ICF+ + + D + R G + +G+++G H G Sbjct: 175 RVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVVGEHIG 232 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT+GQR+G+G+ G+ +V D S+ + V L + +++W Sbjct: 233 LAFYTLGQRKGIGLGGSREGSGDAWYVARKDMASNTLYVVQGHDHPWLLTPTLVAADLSW 292 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYT 369 + + + G K R Q P V D D + + F +++ V GQ+ V Y Sbjct: 293 VAG----EPPLAGASMAAKTRYRQSDAPCVVDAADGDMLKLAFAEAQWAVTPGQSAVLYD 348 Query: 370 SDSNEARVLGGGIISGSK 387 D LGGGII ++ Sbjct: 349 GDV----CLGGGIIQSAQ 362 >gi|116513846|ref|YP_812752.1| tRNA-specific 2-thiouridylase MnmA [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|122275384|sp|Q04B58|MNMA_LACDB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|116093161|gb|ABJ58314.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125503|gb|ADY84833.1| Probable tRNA-methyltransferase [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 375 Score = 473 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 136/387 (35%), Positives = 192/387 (49%), Gaps = 25/387 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSKIRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TNDDGVCTATEDYEDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++V D I + +Y ++E+ + V F Y AG TP P + CN VKF L L Sbjct: 60 KKVADKIGIPYYSINFEKEYWERVFQYFLKEYKAGRTPNPDIMCNTEVKFKSFLEYALDL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD LA GHY ++ + D M RP D +DQ+YFL TQ+Q+ + FPL D+ Sbjct: 120 DADYLAMGHYAKTMV----DENGVTHMMRPKDGNKDQTYFLSQLTQEQIKRVMFPLQDLT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A E GL A K DS ICF+ + + + A GD+V +G+++G H Sbjct: 176 KPEVRRIAEEAGLVNAKKKDSTGICFIGERNFKHFLSEFLP--AQGGDMVTPDGKVVGHH 233 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G++ YTIGQR+GLG+ + P FVV D +++IV L R+ + Sbjct: 234 AGLMYYTIGQRQGLGLGSTKESTAPWFVVGKDLEKNQLIVEQGYDSPRLYADRLQASGMT 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACVF 367 + ED FK K R Q V V V+ V F++ V GQA V Sbjct: 294 FFTGNPEEDT---EFKATAKFRYRQCDVGVTVKYYAASKTADVYFDEPARAVTPGQALVL 350 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEE 394 Y + LGGG I + + D + Sbjct: 351 YNGE----ECLGGGNIDAAFKDDKKLQ 373 >gi|288941240|ref|YP_003443480.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Allochromatium vinosum DSM 180] gi|288896612|gb|ADC62448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Allochromatium vinosum DSM 180] Length = 371 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 124/380 (32%), Positives = 184/380 (48%), Gaps = 26/380 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 + P RV+V +SGGVDS++ A L GY V + ++ + A +G C A +D+ Sbjct: 5 AQTPSAQRVIVGLSGGVDSAIAAHRLLEQGYAVEALFMKNWEEDDA---EGYCAAAEDLA 61 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DAR V + + + + ++ + + V F Y A TP P V CNR +KF+ L Sbjct: 62 DARAVAERLGIRLHTVNFSAEYWDRVFEYFLREYQALRTPNPDVLCNREIKFAAFLDHAL 121 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGA+ +ATGHY R V D + + R +D ++DQ+YFL Q+QL FPL D Sbjct: 122 GLGAEAIATGHYAR----VVADAQGGYHLHRAVDADKDQTYFLHLLDQEQLSRALFPLAD 177 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 + K VR LAR +GL A K DS ICF+ + ++ D + R G I G LG Sbjct: 178 LTKGEVRALARRLGLANAAKKDSTGICFIGERRFSDFLARYLPRE--PGPIETPEGVRLG 235 Query: 255 RHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 H+G+ YT+GQR+GLG+ P +V D ++R+IV L + Sbjct: 236 EHHGLAYYTLGQRQGLGIGGVSQGREAPWYVAVKDSANNRLIVVQDSRHPLLMSTGLEAL 295 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQAC 365 + +W+ E F+C ++R Q V+ DG V F++ + V GQ+ Sbjct: 296 QPHWISGRAPETP----FRCLARLRHRQPLQACELVEIGADGCRVRFDEPQRAVTPGQSV 351 Query: 366 VFYTSDSNEARVLGGGIISG 385 VFY E LGG +I Sbjct: 352 VFYQ----ETECLGGAVIER 367 >gi|238026255|ref|YP_002910486.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia glumae BGR1] gi|237875449|gb|ACR27782.1| TRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia glumae BGR1] Length = 393 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 130/387 (33%), Positives = 180/387 (46%), Gaps = 32/387 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D Sbjct: 2 KKQRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R R G R + + +D +DQSYFL Q QL RFPLG+M K Sbjct: 119 ETIATGHYARVRERDG-----RFELLKALDQTKDQSYFLHRLNQAQLSKTRFPLGEMPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A +GL A K DS ICF+ + + D + R G + +G+ +G H G Sbjct: 174 QVREIAARIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TRPGPMRTPDGRRVGEHIG 231 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT GQR+G+G+ GEP FV D S+ + V L H + ++W Sbjct: 232 LAFYTFGQRKGIGLGGSRDGSGEPWFVAGKDIASNTLYVAQGHDHPWLLSHELVAGNVSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV------QRNDDGVYVDFEKSEVGVASGQA 364 + + DGF C K R Q + + + F+ + V GQ+ Sbjct: 292 VAG----EPPADGFVCGAKTRYRQADSACSFARAKAGEAGEPRFSLAFDAPQWAVTPGQS 347 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDA 391 V Y + LGGGII S Sbjct: 348 AVLYDGEV----CLGGGIIETVATSQP 370 >gi|184158965|ref|YP_001847304.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii ACICU] gi|294840582|ref|ZP_06785265.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter sp. 6014059] gi|205811014|sp|B2HVN5|MNMA_ACIBC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|183210559|gb|ACC57957.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Acinetobacter baumannii ACICU] gi|322508947|gb|ADX04401.1| trmU [Acinetobacter baumannii 1656-2] gi|323518933|gb|ADX93314.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter baumannii TCDC-AB0715] Length = 377 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 121/379 (31%), Positives = 200/379 (52%), Gaps = 23/379 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ V Sbjct: 2 QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAV 58 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + + ++ + + V F + YAAG TP P + CN+ +KF L LGAD Sbjct: 59 ADKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGAD 118 Query: 140 VLATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R+ G+ + R +D +DQ+YFL A +++ FP+G+++K Sbjct: 119 FIATGHYARRAETAYNSKGEAYAPLLRGLDKNKDQTYFLHAVHGREINKTLFPVGEIEKP 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E+ L A K DS ICF+ + ++ D +K+ A G IV NG+ +G H+G Sbjct: 179 EVRRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDNGKEVGEHHG 236 Query: 259 IINYTI-----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 ++ YT+ G+ A FV++ D ++R++VG ++ +++ I+W Sbjct: 237 LMYYTLGQRGGIGLGGMKGASEGAWFVLHKDVANNRLVVGQGHDHPLMQSTQLWSEAIDW 296 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD---GVYVDFEKSEVGVASGQACVF 367 + ++ +G +C K R Q V +++ GV V+F++ + V GQ+ VF Sbjct: 297 VAGE--QNIPAEGLRCTAKTRYRQPDQACTVFIDENSEHGVRVEFDEPQRAVTPGQSVVF 354 Query: 368 YTSDSNEARVLGGGIISGS 386 Y+ + LGGG+I + Sbjct: 355 YSDEV----CLGGGVIHHT 369 >gi|50084409|ref|YP_045919.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter sp. ADP1] gi|73919892|sp|Q6FCW2|MNMA_ACIAD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|49530385|emb|CAG68097.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter sp. ADP1] Length = 377 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 124/376 (32%), Positives = 202/376 (53%), Gaps = 23/376 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ V Sbjct: 2 QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTALEDLADAQAV 58 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + + ++ + + V F + YAAG TP P + CN+ +KF + LGAD Sbjct: 59 ADKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFIDHAMTLGAD 118 Query: 140 VLATGHYIRSRLYVGDD-GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R + + G+ + R +D +DQSYFL A +++ FP+G+++K Sbjct: 119 FIATGHYTRRGESMQNSRGESYAPLLRGVDNNKDQSYFLHAVHGREINKTLFPVGEIEKP 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A ++ L A K DS ICF+ + ++ D +K+ A G IV NG+ +G H+G Sbjct: 179 EVRKIAEKLDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDNGKEVGEHHG 236 Query: 259 IINYT-----IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 ++ YT GL A FV++ D ++R+++G ++ ++ ++I+W Sbjct: 237 LMYYTLGQRGGIGLGGLKGAAEGAWFVLHKDLENNRLVIGQGHEHPLMQSTTLWSQDIDW 296 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD---GVYVDFEKSEVGVASGQACVF 367 + +D GF+C K R Q + R++D GV V+F++ + V GQ+ VF Sbjct: 297 VAGE--QDIPASGFRCTAKTRYRQPDQACTIYRDEDRNNGVRVEFDEPQRAVTPGQSVVF 354 Query: 368 YTSDSNEARVLGGGII 383 YT++ LGGG+I Sbjct: 355 YTNEI----CLGGGVI 366 >gi|154244361|ref|YP_001415319.1| tRNA-specific 2-thiouridylase MnmA [Xanthobacter autotrophicus Py2] gi|154158446|gb|ABS65662.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xanthobacter autotrophicus Py2] Length = 436 Score = 473 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 211/386 (54%), Positives = 262/386 (67%), Gaps = 5/386 (1%) Query: 4 SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63 + T L LD D +P RVVVAMSGGVDSSVVA L R GYDV+GVTLQLY+ +A+ R Sbjct: 46 TTMTDLPLLDTDGDPASTRVVVAMSGGVDSSVVAGLYARAGYDVVGVTLQLYDHGEAAHR 105 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 +G+CCAGQD+YDA V T+ + HYV DYE RF+ VI FA+SYA+G TP+PCVDCNRT Sbjct: 106 RGACCAGQDIYDASEVARTLGIPHYVLDYESRFKEEVIDRFAASYASGVTPIPCVDCNRT 165 Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183 VKF DLL+ +LGA LATGHY+ SR RR + R + RDQSYFL+ATT Sbjct: 166 VKFRDLLATAEELGARYLATGHYVASRALPD----GRRGLYRAAEEARDQSYFLYATTAA 221 Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243 QL LRFPLG+M+K VR LA E GL +ADK DSQDICFV G Y VV+R+ A G Sbjct: 222 QLERLRFPLGEMRKADVRALAAEFGLPVADKPDSQDICFVPGGDYAQVVQRLRPEAAEPG 281 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 DIVHL+G++LGRH G+++YTIGQR+GLG+A EPL+V+ +D +V VGPR +L V I Sbjct: 282 DIVHLDGRVLGRHRGVMHYTIGQRKGLGIATPEPLYVIAIDAARQQVRVGPRAALSVSAI 341 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASG 362 + ++NWLGD F DA+ +VK+RS++ PVP + R DG V E GVA G Sbjct: 342 TIDDVNWLGDIPFTDALARQADVYVKVRSTRPPVPAHLARATDGTPAVHLAVGEEGVAPG 401 Query: 363 QACVFYTSDSNEARVLGGGIISGSKR 388 QACV Y AR+LGGG I ++R Sbjct: 402 QACVLYDDAGAAARLLGGGTIMRAER 427 >gi|291545182|emb|CBL18291.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ruminococcus sp. 18P13] Length = 359 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 154/367 (41%), Positives = 210/367 (57%), Gaps = 15/367 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK---ASKRKGSCCAGQDVYDAR 77 +V++ MSGGVDSSV A L+++GYDV GVTL+L+ A +CCA +DV DAR Sbjct: 2 KKVMIGMSGGVDSSVAALRLQQEGYDVTGVTLKLFGDEDIIQAPDATRTCCALRDVEDAR 61 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 V + H VF++++ FR+ V+ PF SY GETP PC+DCNR +KF +L LG Sbjct: 62 SVAYRLGFEHLVFNFKDAFRSHVMQPFCDSYLRGETPNPCIDCNRHIKFDAMLRRAEALG 121 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D +ATGHY R D R ++CRP D +DQ+Y L+ TQ QL FPLGD++K Sbjct: 122 YDYIATGHYAVRR---QDPATGRYLLCRPKDRSKDQTYVLYNLTQHQLAHTLFPLGDLEK 178 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR +A GL + K DSQDICFV G Y ++ GD + G +GRH Sbjct: 179 AQVRQMAEAAGLVNSHKPDSQDICFVPDGDYAGYIRHATGAEIQPGDFLDTTGNPIGRHR 238 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 G+I+YTIGQR+GLG+++G P +VV D S+ V +G L +RE+NW+ Sbjct: 239 GLIHYTIGQRKGLGLSLGRPAYVVGKDAASNTVTIGAESDLYTDSFTVRELNWISI---- 294 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 A+ + VK R SQ VP ++ +DG FE + V +GQ+ VFY D+ Sbjct: 295 PALTAPMQVTVKTRYSQTEVPCRIEPMEDGTCRAVFEAPQRAVTAGQSAVFYDGDT---- 350 Query: 377 VLGGGII 383 V+GGGII Sbjct: 351 VVGGGII 357 >gi|94311890|ref|YP_585100.1| tRNA-specific 2-thiouridylase MnmA [Cupriavidus metallidurans CH34] gi|205816893|sp|Q1LJ45|MNMA_RALME RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|93355742|gb|ABF09831.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cupriavidus metallidurans CH34] Length = 359 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 177/374 (47%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RVVV +SGGVDSSV A LLK+ GY+VIG+ ++ + S+ C QD D Sbjct: 2 SGKRVVVGLSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSE---YCSTRQDWLDVAS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I V ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADVIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R R + + + D +DQSYFL Q QL FPLG++ K Sbjct: 119 NTIATGHYARVRQAA----NGKFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKT 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A E+GL A K DS ICF+ + + D + R G + G+++G H G Sbjct: 175 RVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TQPGPMKTPEGKVVGEHIG 232 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT+GQR+G+G+ G+ +V D S+ + V L + +++W Sbjct: 233 LAFYTLGQRKGIGLGGSRDGSGDAWYVARKDMASNTLYVVQGHDHPWLLTSELNAADLSW 292 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYT 369 + + G K R Q P V D + + F + + V GQ+ V Y Sbjct: 293 VAG----EPPAAGATMAAKTRYRQSDAPCRVVAAEGDALKLSFAEPQWAVTPGQSAVLYD 348 Query: 370 SDSNEARVLGGGII 383 D LGGGII Sbjct: 349 GDV----CLGGGII 358 >gi|254475742|ref|ZP_05089128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ruegeria sp. R11] gi|214029985|gb|EEB70820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ruegeria sp. R11] Length = 381 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 193/386 (50%), Positives = 252/386 (65%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M LNSL K P + RVVVAMSGGVDSSVVAA L GYDV+GVTLQLY+ A Sbjct: 1 MAQESNPPLNSLGFAKPPSETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + HYV DYE F++AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL R L AD +ATGHYI+ ++ G + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETARDLEADCMATGHYIQRKM-----GAHGPELHSAEDANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K++ R++A + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 TPEQLDYLRFPLGHLPSKDATREMAAQYGLAVADKPDSQDICFVPNGDYASVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IVH +G++LG+HNG+I+YTIGQRRGLG+ + EPL+VV LD ++ +V+VGP+E L Sbjct: 236 AEPGEIVHADGRVLGQHNGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDNKQVVVGPKEML 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 I +REINWLGD F + VK+RS++ P ++ ++ V+ E Sbjct: 296 ATRTIPVREINWLGDAPFTSQP--EWHLKVKVRSTRPPREAIIRPISETEAEVELLTPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 GV+ GQACVFY + +R+ GGG I Sbjct: 354 GVSPGQACVFYAGE--GSRIYGGGWI 377 >gi|197303193|ref|ZP_03168235.1| hypothetical protein RUMLAC_01916 [Ruminococcus lactaris ATCC 29176] gi|197297733|gb|EDY32291.1| hypothetical protein RUMLAC_01916 [Ruminococcus lactaris ATCC 29176] Length = 358 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 141/368 (38%), Positives = 209/368 (56%), Gaps = 15/368 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDA 76 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + + + G CC V DA Sbjct: 2 SKGKVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEENTVQEENGGCCGLSAVDDA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV I + +YV ++++ F+ +VI F Y AG TP PC+ CNR VK+ LL + + Sbjct: 62 RRVAAAIGIPYYVMNFKDEFQKSVIEYFTKEYLAGRTPNPCIACNRYVKWEALLQRSLSI 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R R + R +E+DQ+Y L+ TQ+QL P+G+ Sbjct: 122 GADYIATGHYARIEHLP----NGRYAIRRSATMEKDQTYALYNLTQEQLARTLMPVGEYS 177 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ +R++A E+GL +A K DSQDICFV G Y ++ + G+ V G++LG+H Sbjct: 178 KDRIREMADEIGLLVAHKPDSQDICFVPDGDYASFIENTTDQVLPTGNFVTPEGKVLGKH 237 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GII+YT+GQR+GLG+A+G P FV+ + ++ V++G E + + E+N++ Sbjct: 238 KGIIHYTVGQRKGLGLALGYPAFVLEIRPETNEVVIGTYEESLTYTVRANELNFMSV--- 294 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + + + + F KIR + V+R +D + F++ GQA V Y + Sbjct: 295 -EQITEPVRIFAKIRYNHKGAWCTVERTGEDEIVCTFDEPIRAATPGQAVVLYDGE---- 349 Query: 376 RVLGGGII 383 VLGGG I Sbjct: 350 YVLGGGTI 357 >gi|253995996|ref|YP_003048060.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylotenera mobilis JLW8] gi|253982675|gb|ACT47533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylotenera mobilis JLW8] Length = 369 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 126/384 (32%), Positives = 196/384 (51%), Gaps = 25/384 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++L+K + ++VV +SGGVDSSV A LLK+ GY+V G+ ++ + + C + Q Sbjct: 1 MNLNKA-QKKKIVVGLSGGVDSSVTALLLKQQGYEVTGLFMKNWEDDDTDE---YCSSKQ 56 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DA V D I + ++ + +++ V F S Y AG TP P + CN +KF L Sbjct: 57 DLIDAVSVADKIGIDIEAVNFSKEYKDRVFANFLSEYQAGRTPNPDILCNAEIKFKAFLD 116 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 +GAD++ATGHY + R GK + + D +DQSYFL+ Q QL FP Sbjct: 117 HAMGMGADLIATGHYAQVRENPLQPGK--FQLLKADDGSKDQSYFLYRLNQAQLSKTLFP 174 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG K VR++AR GL A+K DS ICF+ + + + + + GD+ G+ Sbjct: 175 LGQHLKREVREIARSAGLINAEKKDSTGICFIGERPFQEFLSKYLPRE--PGDMKTPEGK 232 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 ++GRH G++ YT+GQR+GL + GEP FV D + +IV L + Sbjct: 233 LVGRHEGLMYYTLGQRQGLKIGGSRESNGEPWFVAGKDMEKNELIVVQGHEHPLLLNDGL 292 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASG 362 +++W+ E+ + K R Q P V + + D V + F + + + G Sbjct: 293 KAGQLHWIS----EENPTTNWVYAAKTRYRQPDAPCEVDRISSDEVEIKFGQKQWAITPG 348 Query: 363 QACVFYTSDSNEARVLGGGIISGS 386 Q+ V Y S+ LGGGII+G+ Sbjct: 349 QSAVVYESNV----CLGGGIITGA 368 >gi|227893351|ref|ZP_04011156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus ultunensis DSM 16047] gi|227864766|gb|EEJ72187.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus ultunensis DSM 16047] Length = 375 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 127/384 (33%), Positives = 187/384 (48%), Gaps = 25/384 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLK+ GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSKTRVVVGMSGGVDSSVSALLLKQQGYDVVGVFMKNWDD---TDDAGVCTATEDYEDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++V D I + +Y ++E+ + + V F + Y G TP P V CN +KF L L Sbjct: 60 KKVADKIGIPYYSINFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLDFAMDL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +A GHY ++ D M RP D +DQ+YFL +Q Q+ + FPL ++ Sbjct: 120 DADYIAMGHYAKTVK----DKNGIVHMMRPKDGNKDQTYFLSQLSQDQIQKVIFPLANLT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + A G +V +G+++G H Sbjct: 176 KPQVREIALANGLATAKKKDSTGICFIGERNFRKFLSEFLP--AKSGKMVTPDGKVVGEH 233 Query: 257 NGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G++ YTIGQR+GLG+ + P FVV D + +IV L + +++ Sbjct: 234 AGLMYYTIGQRQGLGLGSTKESTDPWFVVGKDLKKNELIVEQGYDSPLLYASHLKASDMS 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVF 367 + D C K R Q + V V D+ V F++ V GQA V Sbjct: 294 FFTGQPDHDF---EMHCSAKFRYRQCDIGVTVKYHAADNTADVYFDEPARAVTPGQALVL 350 Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391 Y + LGGG I + + D Sbjct: 351 YNGE----ECLGGGNIDAAYQEDK 370 >gi|238897773|ref|YP_002923452.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465530|gb|ACQ67304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 364 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 127/378 (33%), Positives = 199/378 (52%), Gaps = 27/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N +VVV MSGGVDSSV A LL GY V G+ ++ + + C A D+ D Sbjct: 3 NKNSKKVVVGMSGGVDSSVAAYLLLEQGYQVCGLFMKNWEEDDN---ELYCAAAVDLSDT 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ- 135 + VCD +N+ + ++ + N V F + Y AG TP P + CN+ +KF L Q Sbjct: 60 QAVCDKLNIELHTVNFSAEYWNQVFTLFLAEYRAGRTPNPDILCNKEIKFKAFLEFALQD 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY+R + G + + R +D +DQSYFL+ QQQL + FP+G + Sbjct: 120 LGADYIATGHYVRHQSNNG-----QHFLLRGIDENKDQSYFLYTIGQQQLANCLFPIGGL 174 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 KK VRD+A+++ L A K DS ICFV + K+ D + + +G +G I+ ++G+ +G+ Sbjct: 175 KKSEVRDIAKKLNLVNAQKKDSTGICFVGERKFRDFLSQYLSG--QKGSIMTVDGKHIGQ 232 Query: 256 HNGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ +T+GQR+GLG+ + P +VV D ++ ++V L + ++ Sbjct: 233 HQGLMYHTLGQRKGLGIGGTKGEGEAPWYVVDKDIKNNILLVAQNPLHPLLMSKGLIAQQ 292 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 ++W+ ++C +K R Q+ + + D V FE V GQ+ VF Sbjct: 293 LHWVN----SPPTKSPYRCVLKTRYRQEDIRAEIIVEQDQSVVRFEHPVSSVTPGQSVVF 348 Query: 368 YTSDSNEARVLGGGIISG 385 Y ++ LGGGII Sbjct: 349 YQNE----LCLGGGIIEK 362 >gi|84500833|ref|ZP_00999068.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oceanicola batsensis HTCC2597] gi|84390900|gb|EAQ03318.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oceanicola batsensis HTCC2597] Length = 382 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 195/386 (50%), Positives = 255/386 (66%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + + LNSL K P + RVVVAMSGGVDSSVVAA+L +GYDV+GVTLQLY+ A Sbjct: 1 MALDRTSDLNSLGFAKPPAETRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + + HYV DYE FR+AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGLDIHDARRVAEEMGFPHYVLDYENIFRDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL R L AD +ATGHYI+ ++ G + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETARDLDADCMATGHYIQRKM-----GAAGAELHSAADAARDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K R LA + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 TPEQLSFLRFPLGHLASKAETRALAAKYGLPVADKPDSQDICFVPNGNYASVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IV +G++LG H G+I+YTIGQRRGLG+ + +PL+VV LD ++ RV+VGP+E L Sbjct: 236 AEPGEIVDTSGRVLGHHEGVIHYTIGQRRGLGIGGLSDPLYVVRLDVDARRVVVGPKELL 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 ++ +REINWLG+G F D + VK+RS++ P ++ +D V+ E Sbjct: 296 ATRQVPVREINWLGEGAFTDQP--EREISVKVRSTRPPREAILRPVSDTEAVVELLTPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 GV+ GQACVFY ++ R+LGGG I Sbjct: 354 GVSPGQACVFY--ETGGTRILGGGWI 377 >gi|224542883|ref|ZP_03683422.1| hypothetical protein CATMIT_02077 [Catenibacterium mitsuokai DSM 15897] gi|224524213|gb|EEF93318.1| hypothetical protein CATMIT_02077 [Catenibacterium mitsuokai DSM 15897] Length = 376 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 127/384 (33%), Positives = 194/384 (50%), Gaps = 27/384 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73 RVV+ +SGGVDS+V A LLK+ GY+VI V ++ ++S + G+ C +D Sbjct: 2 KRVVLGLSGGVDSAVAAYLLKKQGYEVICVFMRNWDSSLNNDILGNPTNDDDVCPQEKDY 61 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ V + + D+ + + + V F YA G TP P + CN+ +KF L Sbjct: 62 QDAQAVATHLGLEIRRVDFIKEYWDQVFTYFLEEYAKGRTPNPDILCNKHIKFKAFLDYA 121 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + + AD +ATGHY R G + +M R +D +DQ+YFL Q QL + FP+G Sbjct: 122 KSIDADYIATGHYARVVHTEG----KESVMLRGVDNNKDQTYFLCQLNQNQLNNSLFPIG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQI 252 ++ K VR +A E+ L +A K DS ICF+ + + + +K A G +V ++ ++ Sbjct: 178 ELTKPEVRRIAEELDLPVAHKKDSTGICFIGERDFREFLKNYIP--AKSGKMVDIVSKKV 235 Query: 253 LGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRE---SLEVHRIYLREI 308 +G H GI+ YTIGQR+GLG+ GEP FVV D + + + + + L H + ++ Sbjct: 236 IGDHQGIMYYTIGQRKGLGIGGNGEPWFVVGKDYDKNILYIAQGDSNKWLLSHGALITDV 295 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVF 367 NW+ + + C K R Q V + D+ +YV F+K V GQA VF Sbjct: 296 NWVS----KTKPEGEYDCTAKFRYRQKDNDVSLHFIDETTLYVTFKKPIKAVTPGQAAVF 351 Query: 368 YTSDSNEARVLGGGIISGSKRSDA 391 Y D LGGG I + Sbjct: 352 YDGDV----CLGGGTIDKVYKDGK 371 >gi|86138410|ref|ZP_01056984.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseobacter sp. MED193] gi|85824935|gb|EAQ45136.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseobacter sp. MED193] Length = 381 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 200/386 (51%), Positives = 256/386 (66%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + T LNSL K P + RVVVAMSGGVDSSVVAA L GYDVIGVTLQLY+ A Sbjct: 1 MALDTDTPLNSLGFAKPPAETRVVVAMSGGVDSSVVAAYLADQGYDVIGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + HYV DYE F++AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL R L AD +ATGHYI+ ++ GD+G + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETARDLEADCMATGHYIQRKM--GDNGAE---LHSAEDANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K++ R++A + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 TPEQLDYLRFPLGHLPSKDATREMAAQYGLAVADKPDSQDICFVPDGNYTSVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IVH +G++LG H G+I+YTIGQRRGLG+ + EPL+VV LD + +VIVGP+E L Sbjct: 236 AEPGEIVHADGRVLGTHTGVIHYTIGQRRGLGIGGLTEPLYVVRLDVDKKQVIVGPKELL 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 I +REINWLGD F+ + VK+RS++ P ++ + V+ E Sbjct: 296 ATRTIPVREINWLGDAPFDSR--QEWNVMVKVRSTRPPREAIIRPLSATTAEVELLTPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 GV+ GQACVFY SDS +R+ GGG I Sbjct: 354 GVSPGQACVFYDSDS--SRIFGGGWI 377 >gi|307265214|ref|ZP_07546773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter wiegelii Rt8.B1] gi|306919836|gb|EFN50051.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermoanaerobacter wiegelii Rt8.B1] Length = 387 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 142/372 (38%), Positives = 212/372 (56%), Gaps = 14/372 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDAR 77 + RV + MSGGVDSSV A LLK++G+DVIG+T++++ KA SCC+ + DA+ Sbjct: 27 NNRVAIGMSGGVDSSVAAYLLKKEGFDVIGLTMKVWVDHAAKAFDSDKSCCSLRATQDAK 86 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 +V + + V HY D+ E F + ++ F + Y G TP PCV CNR +KF +LL +LG Sbjct: 87 KVAEMLGVPHYTVDFSEVFYDKIVNYFINEYLKGRTPNPCVLCNRQIKFGELLEKAFELG 146 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A +ATGHY+R D+ +R ++ + +D +DQSY L+ TQ+QL FPLG+ KK Sbjct: 147 AYYIATGHYVRKDY---DEKTKRYLLKKGIDSSKDQSYVLYRLTQKQLEHALFPLGNYKK 203 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 E +R LA + L +A K +SQ+ICF+ Y +KR G+ ++G+ LG H Sbjct: 204 EEIRALAEGLKLPVAKKPESQEICFIPDNDYSGFIKRQVKDEIKPGEFRDVHGKFLGYHK 263 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GII+YTIGQRRGLG++ PL+VV +D ++ V+VG +E + + N++ Sbjct: 264 GIIHYTIGQRRGLGLSSDRPLYVVDIDVKNNVVVVGHQEDVWGEELISSNNNFISI---- 319 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + K KIR + ++ +D V V F K + + GQ+ VFY D Sbjct: 320 EKLKREMKVTAKIRYTAKEEEAIIKPYEEDKVLVKFLKPQRAITPGQSVVFYDKDV---- 375 Query: 377 VLGGGIISGSKR 388 V+GGGII R Sbjct: 376 VVGGGIIEKKVR 387 >gi|260549713|ref|ZP_05823930.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter sp. RUH2624] gi|260407230|gb|EEX00706.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter sp. RUH2624] Length = 377 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 121/379 (31%), Positives = 199/379 (52%), Gaps = 23/379 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ V Sbjct: 2 QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAV 58 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + + ++ + + V F + YAAG TP P + CN+ +KF L LGAD Sbjct: 59 ADKIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGAD 118 Query: 140 VLATGHYI-RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R+ G+ + R +D +DQ+YFL A +++ FP+G+++K Sbjct: 119 FIATGHYARRAETAYNSKGEAYAPLLRGLDNNKDQTYFLHAVHGREINKTLFPVGEIEKP 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E+ L A K DS ICF+ + ++ D +K+ A G IV NG+ +G H+G Sbjct: 179 EVRRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDNGKEVGEHHG 236 Query: 259 IINYTI-----GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 ++ YT+ G+ A FV++ D ++R++VG ++ +++ I+W Sbjct: 237 LMYYTLGQRGGIGLGGMKGAAEGAWFVLHKDVANNRLVVGQGHEHPLMQSTQLWSESIDW 296 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD---GVYVDFEKSEVGVASGQACVF 367 + + +G +C K R Q V +++ GV V+F++ + V GQ+ VF Sbjct: 297 VAGE--QHIPAEGLRCTAKTRYRQPDQACTVFIDENSEHGVRVEFDEPQRAVTPGQSVVF 354 Query: 368 YTSDSNEARVLGGGIISGS 386 Y+ + LGGG+I + Sbjct: 355 YSDEV----CLGGGVIHHT 369 >gi|258515487|ref|YP_003191709.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Desulfotomaculum acetoxidans DSM 771] gi|257779192|gb|ACV63086.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Desulfotomaculum acetoxidans DSM 771] Length = 362 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 139/368 (37%), Positives = 209/368 (56%), Gaps = 15/368 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDA 76 K +VVVAMSGGVDSSV AALL +GY++ GVT+Q+++ A+ +G CC+ V DA Sbjct: 2 KGKKVVVAMSGGVDSSVTAALLLEEGYEITGVTMQIWDPEQKDATGEEG-CCSLSAVDDA 60 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV + +N+ +YV ++ ++F +VI F + Y G TP PC+ CNR VKF+ LL + Sbjct: 61 RRVANILNIPYYVLNFRKQFEKSVIDYFLAEYLEGRTPNPCIACNRYVKFTALLQKAISI 120 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R R I+ + D+++DQ+Y L+ TQ Q+ PLG Sbjct: 121 GADFIATGHYARLGYSK---EYNRYIIKKSADIKKDQTYVLYNLTQNQIAHTLMPLGVYT 177 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 KE VR++A + L +A K +SQ+ICFV Y +++ G + + G+++G H Sbjct: 178 KEQVREMALKYCLPVAAKPESQEICFVPDNDYRSFIQKKTDAEIKPGLFLDIQGKVIGEH 237 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GI YT GQRRGLG+A GE ++VV +D + V +G E + + + N++ Sbjct: 238 RGIPYYTYGQRRGLGIAAGERMYVVDIDPARNTVTLGYEEDIFTRELISGQNNFIAI--- 294 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 D ++ + KIR + P + +D V V F++ + V GQA VFY+ D+ Sbjct: 295 -DKLIAPMEVEAKIRYNSKPYKAVIFSEGEDRVKVVFDEPQRSVTPGQAVVFYSGDT--- 350 Query: 376 RVLGGGII 383 V+GGG I Sbjct: 351 -VIGGGTI 357 >gi|312795152|ref|YP_004028074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia rhizoxinica HKI 454] gi|312166927|emb|CBW73930.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) [Burkholderia rhizoxinica HKI 454] Length = 380 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 125/385 (32%), Positives = 180/385 (46%), Gaps = 27/385 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVV+ MSGGVDSSV A LLK+ GY+V+G+ ++ + S+ C + QD D V Sbjct: 3 KQRVVIGMSGGVDSSVAAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSSRQDWIDVVSV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + ++ ++++ V F Y+AG TP P V CN +KF L LGA Sbjct: 60 ADLIGIDVEAVNFAAQYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGAQ 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R R + + +D +DQSYFL Q QL FPLG++ K Sbjct: 120 TIATGHYARVRRI-----GERFELLKALDSSKDQSYFLHRLNQSQLSRTLFPLGELPKTR 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A ++GL A K DS ICF+ + + + R G + +G+++G H G+ Sbjct: 175 VREIAAQIGLPNAAKKDSTGICFIGERPFRTFLNRYLP--TRPGPMRTPDGKVVGEHIGL 232 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 YT+GQR+G+G+ GEP FV D + + V L + +W+ Sbjct: 233 AFYTLGQRKGIGLGGSRDGSGEPWFVAGKDMAGNTLYVVQGHDHPWLLSSTLQAENASWI 292 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 A DG C K R Q Q D + F +S+ V GQ+ V Y Sbjct: 293 AGA----APQDGHSCTAKTRYRQQDAACTFQHAPDRHFALHFAQSQWAVTPGQSAVLYDG 348 Query: 371 DSNEARVLGGGIISGSKRSDAVEES 395 D LGGGII + + Sbjct: 349 DV----CLGGGIIGATSAPSTPAAA 369 >gi|284047421|ref|YP_003397760.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Acidaminococcus fermentans DSM 20731] gi|283951642|gb|ADB46445.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Acidaminococcus fermentans DSM 20731] Length = 356 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 145/367 (39%), Positives = 207/367 (56%), Gaps = 14/367 (3%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRV 79 M+ ++AMSGGVDSSV A L++ GYD IG ++LYN+ A +CC+ DV DAR V Sbjct: 1 MKALIAMSGGVDSSVSAKLMQDAGYDCIGCNMKLYNNPDAGYCSTKTCCSLSDVEDARSV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C + + YVF+Y E F++ V+ FA SY G TP PC+DCN+ +KF L R+LG D Sbjct: 61 CARLGMPFYVFNYTEEFKHDVMEKFARSYTLGHTPNPCIDCNKFLKFGALYQRARELGCD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 + TGHY R R ++ + + + +D ++DQSY L+ TQ+QL FPLG K Sbjct: 121 CVVTGHYARIR---KNETTGKYELLKALDPKKDQSYVLYNLTQEQLAHTCFPLGGYHKTH 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R++A E G + K DSQDICFV G+Y D V+RI G + L G ++G+H GI Sbjct: 178 TREIAEENGFINSHKPDSQDICFVPNGQYTDAVQRILDYRPQPGPFLDLEGNVIGQHRGI 237 Query: 260 INYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I YT+GQ + LG+ + PL+VV +D + ++VGP E+L + + E NW+ + Sbjct: 238 IYYTLGQHKHLGLNQPDFPLYVVKIDPKKNAIVVGPSEALFSRKASVGEANWISG----E 293 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 +C VK+R QD P V D + F++ + + GQA V Y + V Sbjct: 294 VPAGPVRCQVKVRYRQDAQPATVTPTGKDTFTIQFDEPQRAITPGQAAVLYDGEV----V 349 Query: 378 LGGGIIS 384 LGGG I Sbjct: 350 LGGGTIE 356 >gi|84686908|ref|ZP_01014792.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Maritimibacter alkaliphilus HTCC2654] gi|84665105|gb|EAQ11585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacterales bacterium HTCC2654] Length = 381 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 200/386 (51%), Positives = 256/386 (66%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + R+NSL K + RVVVAMSGGVDSSVVAA LKR+GYDVIGVTLQLY+ A Sbjct: 1 MSLDTEIRVNSLGFAKPESETRVVVAMSGGVDSSVVAAKLKREGYDVIGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + + HYV DYE FR AVI FA SY G TP+PC+ C Sbjct: 61 LAKKGACCAGVDIHDARRVAEEMGFPHYVLDYENIFREAVIEEFADSYLGGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL+ + L AD +ATGHYI+ DG + R D RDQSYFLF+T Sbjct: 121 NERVKFKDLLATAKDLDADCMATGHYIQRF-----DGDAGPELHRAADANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K+ R LARE GL++ADK DSQDICFV G Y V++++ G Sbjct: 176 TPEQLSFLRFPLGHLKTKDETRALAREFGLEVADKPDSQDICFVPDGNYAGVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IVH +G++LGRH+G+I+YTIGQRRGLG+ + +PL+VV LD + +V+VGP+E L Sbjct: 236 AEPGEIVHADGRVLGRHDGVIHYTIGQRRGLGIGGLSDPLYVVRLDTETRQVVVGPKEML 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 I +REINWLGD F + VK+RS++ P ++ ++ V+ E Sbjct: 296 ATRTIPVREINWLGDAPFTSQ--GEWHLSVKVRSTRPPREAVIRPISETEAEVELLTPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 GV+ GQACVFY DS +R+ GGG I Sbjct: 354 GVSPGQACVFYAPDS--SRIFGGGWI 377 >gi|225570688|ref|ZP_03779711.1| hypothetical protein CLOHYLEM_06788 [Clostridium hylemonae DSM 15053] gi|225160515|gb|EEG73134.1| hypothetical protein CLOHYLEM_06788 [Clostridium hylemonae DSM 15053] Length = 361 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 132/368 (35%), Positives = 203/368 (55%), Gaps = 15/368 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDA 76 + +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + + G CC V DA Sbjct: 2 EKKKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQEEERAVQEENGGCCGLSAVDDA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV + + +YV ++ + F+ VI F Y G TP PC+ CNR VK+ LL + + Sbjct: 62 RRVAAQLGIPYYVMNFRQEFKEHVIDYFVDEYTHGRTPNPCIACNRYVKWESLLKRSMDI 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R + R + +DQ+Y L+ TQ+QL P+G + Sbjct: 122 GADYIATGHYARIEQLPNE----RYALKVSATDTKDQTYALYNLTQEQLRRTLMPVGMYE 177 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 KE +R +A +GL++A+K DSQDICFV G Y +++ +L G+ V +G ++G H Sbjct: 178 KEEIRRIAGSLGLEVANKPDSQDICFVPDGDYASYIEKEAGVKSLPGNFVTSDGTVVGTH 237 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GI++YT+GQR+GLG+++G P+FV+ + ++ ++VG E + +N++ G Sbjct: 238 KGIVHYTVGQRKGLGLSLGHPVFVLDIRPGTNEIVVGSNEESMSRYVRADNVNFMSVG-- 295 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + + + + KIR + ++ D + F++ + GQA V Y + Sbjct: 296 --GLPEKKRVWAKIRYNHRGAWCTAEKTGPDEIVCTFDEPQRAATPGQAVVLYDGE---- 349 Query: 376 RVLGGGII 383 VLGGG I Sbjct: 350 YVLGGGTI 357 >gi|167586157|ref|ZP_02378545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia ubonensis Bu] Length = 382 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 125/388 (32%), Positives = 180/388 (46%), Gaps = 29/388 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D Sbjct: 2 SKRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMTLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K Sbjct: 119 ETIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A ++GL A K DS ICF+ + + D + R G + +G+ +G H G Sbjct: 174 KVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIG 231 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT GQR+G+G+ GEP FV D S+ + V L R+ ++W Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIPSNTLYVVQGHDHPWLLSRRLVAGNVSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + DGF C K R Q + + + F+ ++ V GQ+ V Y Sbjct: 292 TAG----EPPADGFACGAKTRYRQADAGCTFARAGGERFSLTFDDAQWAVTPGQSAVLYD 347 Query: 370 SDSNEARVLGGGIIS--GSKRSDAVEES 395 + +GGGII + + + Sbjct: 348 GEI----CVGGGIIEFAATGQPGQAAPA 371 >gi|254283074|ref|ZP_04958042.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma proteobacterium NOR51-B] gi|219679277|gb|EED35626.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma proteobacterium NOR51-B] Length = 363 Score = 471 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 120/375 (32%), Positives = 189/375 (50%), Gaps = 26/375 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + +V+V MSGGVDSSV A LL+ GY V G+ ++ + ++ C A +D+ DA V Sbjct: 6 NTKVIVGMSGGVDSSVSALLLRDAGYRVEGLFMKNWEEDDGTE---YCTAKEDLADASSV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + + ++ + + V F S Y AG TP P + CNR +KF + LGAD Sbjct: 63 ADRLGIPLHEANFAAEYWDNVFEHFLSEYRAGRTPNPDILCNREIKFRAFIDYATLLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R + + + + + +D +DQSYFL +L FP+G++ K Sbjct: 123 CIATGHYVRRGHF-----ESKATLLKGLDTNKDQSYFLHQVGNVELGRTLFPVGEIDKPR 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA E L A K DS ICF+ + ++ D +++ A G+I L+G+ +G+H G+ Sbjct: 178 VRQLAEENQLVTAKKKDSTGICFIGERRFKDFLRQYLP--AQPGNIEDLDGRTIGQHIGL 235 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + +TIGQR+GLG+ P +VV D + + ++V +L R+ +I W+ Sbjct: 236 MYHTIGQRQGLGIGGLADHDEAPWYVVGKDLDRNVLLVAQGNDHPALFSSRLLTGDIFWI 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + + KIR Q + D G V F+ + V GQ+ VFY + Sbjct: 296 SG----EPPAPSVQLSAKIRYRQPDQDCHLVAIDGGFEVVFDTPQRAVTPGQSVVFYDGE 351 Query: 372 SNEARVLGGGIISGS 386 LGGG+I S Sbjct: 352 C----CLGGGVIEDS 362 >gi|167854995|ref|ZP_02477769.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus parasuis 29755] gi|219870378|ref|YP_002474753.1| tRNA-specific 2-thiouridylase MnmA [Haemophilus parasuis SH0165] gi|167853843|gb|EDS25083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus parasuis 29755] gi|219690582|gb|ACL31805.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus parasuis SH0165] Length = 383 Score = 471 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 126/388 (32%), Positives = 205/388 (52%), Gaps = 29/388 (7%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 L L +N K +V+ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 11 PALTDEQLAENAK-KKVICGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 66 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C A D+ DA+ VCD + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 67 CTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKF 126 Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 L LGA+ +ATGHY+R ++ + R +D +DQSYFL+ ++QQ+ Sbjct: 127 KAFLEYAAEDLGANFIATGHYVRRPPL-----DQQPKLLRGLDSNKDQSYFLYTLSEQQV 181 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+GD++K VR +A ++GL A K DS ICF+ + K+ D + R A GDI Sbjct: 182 AQSLFPVGDIEKPIVRAIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQAGDI 239 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES--- 297 ++GQ++GRH+G++ +T+GQR+GLG+ +VV D ++ +IV + Sbjct: 240 KTVDGQVIGRHDGLMYHTLGQRKGLGIGGVKGASENAWYVVEKDLVNNVLIVAQGQDNSA 299 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356 L + +++W+ + + +C VK R Q + +Q DD + V F++ + Sbjct: 300 LLSSGLIASQLHWVD----RQPIREKLRCTVKTRYRQADILCEIQPLDDETIRVIFDEPQ 355 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIIS 384 + V GQ+ VFY + LGGGII Sbjct: 356 IAVTPGQSAVFYQGEV----CLGGGIIE 379 >gi|186477293|ref|YP_001858763.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia phymatum STM815] gi|205811492|sp|B2JGI9|MNMA_BURP8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|184193752|gb|ACC71717.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia phymatum STM815] Length = 384 Score = 471 bits (1214), Expect = e-131, Method: Composition-based stats. Identities = 128/395 (32%), Positives = 179/395 (45%), Gaps = 32/395 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + S+ C QD D Sbjct: 2 SKQRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R R G R + + D +DQSYFL Q QL FPLGD+ K Sbjct: 119 ETIATGHYARVREIDG-----RFELLKARDHTKDQSYFLHRLNQAQLSKTLFPLGDIPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A ++GL A K DS ICF+ + + D + R G + +G+ +G H G Sbjct: 174 KVREIAEQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TRPGPMKTTDGKTVGEHIG 231 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT GQR+G+G+ GEP FV D S+ + V L + +W Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAGKDIESNTLYVAQGHDHPWLLSRTLTAGNTSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-----VQRNDDGVY-VDFEKSEVGVASGQA 364 + E G C K R Q + + ++ + F ++ V GQ+ Sbjct: 292 VAGHAPE----VGHACAAKTRYRQADAACTFGAAGANADPNALFSLHFADAQWAVTPGQS 347 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSV 399 V Y D LGGGII + + V Sbjct: 348 AVLYDGDV----CLGGGIIEHAATAQPVTRQPQKA 378 >gi|292492808|ref|YP_003528247.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosococcus halophilus Nc4] gi|291581403|gb|ADE15860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosococcus halophilus Nc4] Length = 367 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 116/374 (31%), Positives = 183/374 (48%), Gaps = 27/374 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV A L+ GY + G+ ++ + C QD DA V Sbjct: 5 KVVVGLSGGVDSSVAALQLQHQGYPISGLFMKNWVDFADESE---CTIAQDREDAHAVTS 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + +S + ++ + + V F Y G TP P + CNR +KF L+ +LG ++ Sbjct: 62 LLGISLHEANFAMEYWDQVFRYFLDEYRLGRTPNPDILCNREIKFKAFLNHALELGNPLI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + + R + + D +DQSYFL+ Q+QL FPLG+++K VR Sbjct: 122 ATGHYARI-----EQKEGRYRLLKGRDKNKDQSYFLYTLGQKQLSHTLFPLGELEKPQVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A L +K DS ICF+ + ++ + + R A G++ G+++G+H+G++ Sbjct: 177 RIAAGANLPNHNKKDSTGICFIGERRFKEFLGRYLP--AQPGEMRTPQGELIGKHDGLMY 234 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGD 313 YT+GQRRGLG+ G P FVV D + + V G L+ + +++W+ Sbjct: 235 YTLGQRRGLGIGGRKNSNGAPWFVVGKDLPRNTLYVAQGGDHPWLKSQTLEANQLHWVAG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + C K R Q P + + + + V F+ + V GQA VFY D Sbjct: 295 ----QPPSLPYLCAAKTRYRQADQPCTLTKITNGRIKVVFDSPQYAVTPGQAVVFYRRD- 349 Query: 373 NEARVLGGGIISGS 386 LGGG I+ + Sbjct: 350 ---ECLGGGTITTT 360 >gi|167745698|ref|ZP_02417825.1| hypothetical protein ANACAC_00390 [Anaerostipes caccae DSM 14662] gi|167655010|gb|EDR99139.1| hypothetical protein ANACAC_00390 [Anaerostipes caccae DSM 14662] Length = 356 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 142/365 (38%), Positives = 202/365 (55%), Gaps = 16/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GY+VIGVT+Q++ + G CC V DARRV Sbjct: 4 KVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDEEQELLEENGGCCGLSAVDDARRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +++ +YV ++++ F+ VI F Y G TP PC+ CNR VK+ LL + +GAD Sbjct: 64 AQALDIPYYVMNFKQDFKEHVIDYFIDEYLDGRTPNPCIACNRYVKWESLLKRSLDIGAD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R + R E+DQ+Y L+ TQ QL P+G+ K+ Sbjct: 124 YIATGHYARIEKLS----NGRYALKRSATPEKDQTYALYNLTQNQLSKTLMPVGEYTKDE 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R++A ++ L +A K DSQDICFV G Y D ++ G+ V ++G ILG H GI Sbjct: 180 IREIAEKIHLPVAHKPDSQDICFV-DGSYGDFIEETTGQKIRPGNFVDMDGNILGTHKGI 238 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 + YT+GQRRGLG+++ +P +VV +DK + V++G E L +Y +N + ED Sbjct: 239 VCYTVGQRRGLGLSLKQPGYVVRIDKERNEVVIGSNEDLMTDTLYGDHVNLMSVSSIED- 297 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 G + K+R + P V + D + V F++ + V GQA VFY D V Sbjct: 298 ---GMRFQAKVRYNHRGAPCTVSMDGKDRIKVLFDEPQRAVTPGQAVVFYDGD----YVA 350 Query: 379 GGGII 383 GG I Sbjct: 351 GGATI 355 >gi|158425974|ref|YP_001527266.1| tRNA-specific 2-thiouridylase MnmA [Azorhizobium caulinodans ORS 571] gi|172047846|sp|A8HVS0|MNMA_AZOC5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|158332863|dbj|BAF90348.1| TRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Azorhizobium caulinodans ORS 571] Length = 390 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 214/385 (55%), Positives = 264/385 (68%), Gaps = 5/385 (1%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72 D+ +P RVVVAMSGGVDSSVVA LL R G+DV+GVTLQLY+ +A++RKG+CCAGQD Sbjct: 7 DIGTDPASTRVVVAMSGGVDSSVVAGLLARAGFDVVGVTLQLYDQGEAARRKGACCAGQD 66 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 +YDAR V D + + HYV DYE RFR VI FA SYAAG TP+PCVDCNRTVKF DLL+ Sbjct: 67 IYDARDVADRLGIPHYVLDYESRFREEVIERFADSYAAGFTPIPCVDCNRTVKFRDLLAT 126 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 LGA VLATGHY+ SR RR + R + RDQSYFL+ATTQ Q LRFPL Sbjct: 127 AEDLGASVLATGHYVASRALPD----GRRGLFRAAEENRDQSYFLYATTQAQATKLRFPL 182 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G M+K VR LA E+GL +ADK DSQDICFV G Y +VV+R+ GDIVHL+G++ Sbjct: 183 GGMRKSDVRALAAELGLPVADKPDSQDICFVPGGDYAEVVERLRPEAGEAGDIVHLDGRV 242 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 LGRH G+++YTIGQR+GLG++ EPL+VV +D V VGPRE+L V I L +INWLG Sbjct: 243 LGRHRGVMHYTIGQRKGLGISTPEPLYVVAIDAARREVRVGPREALAVRSIGLTDINWLG 302 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSD 371 D DA +VK+RS++ P P + R+ DG V+ E GVA GQACVFY + Sbjct: 303 DVPLLDACAAEQDIYVKVRSTRPPTPARLLRDADGAPTVELLAGEEGVAPGQACVFYDAA 362 Query: 372 SNEARVLGGGIISGSKRSDAVEESL 396 S AR+LGGG I ++R+ + Sbjct: 363 SGAARLLGGGTIVRAERAGRHLAAA 387 >gi|329767202|ref|ZP_08258729.1| tRNA-specific 2-thiouridylase mnmA [Gemella haemolysans M341] gi|328836869|gb|EGF86516.1| tRNA-specific 2-thiouridylase mnmA [Gemella haemolysans M341] Length = 370 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 130/383 (33%), Positives = 195/383 (50%), Gaps = 21/383 (5%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 + +VVV MSGGVDSSV A LLK+ GYDVIGV ++ + + +G C A +D D Sbjct: 2 NSNKKVVVGMSGGVDSSVTAYLLKQQGYDVIGVFMKNWEEKDD---RGVCLAEKDYEDVI 58 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 +VC+ +++ +Y ++E+ + + V F Y G TP P + CN+ +KF L LG Sbjct: 59 KVCEQLDIPYYSINFEKEYWDKVFTYFLDEYKKGRTPNPDIMCNKEIKFKVFLEYAEDLG 118 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY R + G+ R+M R +D +DQ+YFL Q Q+ ++ FP+G+++K Sbjct: 119 ADYVATGHYARVKDVDGE-----RLMLRGVDNNKDQTYFLSQLKQHQIKNILFPVGELEK 173 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + VR +A E GL A K DS ICF+ + + + + + A G +V L+G I G H Sbjct: 174 KDVRKIAEEAGLATAKKKDSTGICFIGEKNFREFLSQYLP--AQGGKMVDLDGNIRGEHI 231 Query: 258 GIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G+++YTIGQR GLG+ GE F D ++ + V E + Sbjct: 232 GLMHYTIGQRHGLGIGGTKDTEGEAWFACGKDLENNVLYVCQGFHNEKLYSDSLLAS-SL 290 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSD 371 ++ + F C K R Q V V+ D+ V V +++ V GQA VFY D Sbjct: 291 SFTTKNPQPNKFTCTAKFRYRQPDTEVEVEVLEDNKVKVVYKEPVRAVTPGQAVVFYDGD 350 Query: 372 SNEARVLGGGIISGSKRSDAVEE 394 LGG II + + Sbjct: 351 V----CLGGAIIDEVYKDGKKLQ 369 >gi|254510076|ref|ZP_05122143.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacteraceae bacterium KLH11] gi|221533787|gb|EEE36775.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacteraceae bacterium KLH11] Length = 381 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 193/386 (50%), Positives = 254/386 (65%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + T LNSL K P + RVVVAMSGGVDSSVVAA L GYDV+GVTLQLY+ A Sbjct: 1 MALDAKTPLNSLGFAKPPSETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + HYV DYE F++AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL R L AD +ATGHYI+ ++ G + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETARDLEADCMATGHYIQRKM-----GPNGSELHSAEDANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K++ R++A + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 TPEQLDFLRFPLGHLPSKDATREMAAQYGLAVADKPDSQDICFVPNGNYASVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IVH +G++L +HNG+I+YTIGQRRGLG+ + EPL+VV LD + +V+VGP+E L Sbjct: 236 AEPGEIVHADGRVLAQHNGVIHYTIGQRRGLGIGGLTEPLYVVKLDVDKKQVVVGPKEML 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + +REINWLGD F D + VK+RS++ P ++ +D V+ E Sbjct: 296 ATRTVPVREINWLGDAPFSSQ--DEWHVSVKVRSTRPPREAIIRPLSDTTAEVELLTPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 G++ GQACVFY ++ +R+ GGG I Sbjct: 354 GISPGQACVFY--ETGGSRIFGGGWI 377 >gi|291613422|ref|YP_003523579.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sideroxydans lithotrophicus ES-1] gi|291583534|gb|ADE11192.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sideroxydans lithotrophicus ES-1] Length = 361 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 129/378 (34%), Positives = 192/378 (50%), Gaps = 27/378 (7%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 ++ + + VVV MSGGVDSSV A LLK GY+VIG+ ++ + S+ C + QD+ D Sbjct: 2 QSNRKITVVVGMSGGVDSSVTALLLKEQGYEVIGLFMKNWEDDDDSE---YCSSRQDLID 58 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A V DTI + ++ + +++ V F Y AG TP P + CN +KF L + Sbjct: 59 AVSVADTIGIPIEAVNFAKEYKDRVFNYFLREYEAGRTPNPDILCNSEIKFKAFLDHAIR 118 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGA+ +ATGHY + R G + + D +DQSYFL Q QL FPLGD+ Sbjct: 119 LGAEKIATGHYAKVREQDGA-----FQLLKADDDSKDQSYFLHRLNQHQLSKSMFPLGDI 173 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K VR++AR+ L A K DS ICF+ + + + + R GD+V G+++G+ Sbjct: 174 PKSKVREIARQHNLSNAAKKDSTGICFIGERPFREFLNRYLP--TKPGDMVTPEGKVMGQ 231 Query: 256 HNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSR--VIVGP-RESLEVHRIYLRE 307 H G+ YT GQR+GLG+ GEP FV D ++R V+ G L ++ + Sbjct: 232 HMGLSFYTYGQRQGLGIGGGKDSSGEPWFVAGKDMANNRLLVVQGHDHPLLLKPQLDALD 291 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACV 366 ++W+GD A K R Q + N D + F++++ V GQ+ V Sbjct: 292 MHWIGDH----APDTTRDYAAKTRYRQQDAACRISINAPDTAHFSFDEAQWAVTPGQSVV 347 Query: 367 FYTSDSNEARVLGGGIIS 384 Y + LGGGII+ Sbjct: 348 AYDGEI----CLGGGIIA 361 >gi|152981022|ref|YP_001352063.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Janthinobacterium sp. Marseille] gi|205816857|sp|A6SUW6|MNMA_JANMA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|151281099|gb|ABR89509.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Janthinobacterium sp. Marseille] Length = 372 Score = 471 bits (1213), Expect = e-131, Method: Composition-based stats. Identities = 122/380 (32%), Positives = 179/380 (47%), Gaps = 27/380 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVV+ MSGGVDSSV A LLK GY+VIG+ ++ + S+ C QD DA V Sbjct: 3 KKRVVIGMSGGVDSSVSAWLLKEQGYEVIGLFMKNWEDDDDSE---YCSTRQDWIDAASV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + V ++ +++ V F Y AG TP P V CN +KF L LGAD Sbjct: 60 ADVVGVDIEAVNFASEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMLLGAD 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ATGHY R R R + + +D +DQSYFL Q QL FPLG+++K Sbjct: 120 MIATGHYARVREVTSGPDAGRVELLKAVDASKDQSYFLHRLNQAQLAKTLFPLGEIRKTE 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++ L A K DS ICF+ + + + + R + G + G I+G H G+ Sbjct: 180 VRKIAEQLKLPNATKKDSTGICFIGERPFREFLNRYLSY--QPGPMKTPEGVIVGEHVGL 237 Query: 260 INYTIGQRRGLGVAM----------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 YT+GQR+G+G+ EP +V D ++ + + L + Sbjct: 238 SFYTLGQRKGIGLGGMKSHKNTDGNSEPWYVARKDVATNTLYIVQGHDHPWLLSSELSAG 297 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 +++W+ + + K R Q V + + DG + F + V GQ+ V Sbjct: 298 QMSWVAGSPPSEEL-----VSAKTRYRQADVACSQRSDADGFSLAFAAPQWAVTPGQSAV 352 Query: 367 FYTSDSNEARVLGGGIISGS 386 Y D LGGGII+ S Sbjct: 353 LYQGDV----CLGGGIINTS 368 >gi|167756778|ref|ZP_02428905.1| hypothetical protein CLORAM_02327 [Clostridium ramosum DSM 1402] gi|237734496|ref|ZP_04564977.1| tRNA-specific 2-thiouridylase mnmA [Mollicutes bacterium D7] gi|167702953|gb|EDS17532.1| hypothetical protein CLORAM_02327 [Clostridium ramosum DSM 1402] gi|229382316|gb|EEO32407.1| tRNA-specific 2-thiouridylase mnmA [Coprobacillus sp. D7] Length = 377 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 132/389 (33%), Positives = 204/389 (52%), Gaps = 27/389 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73 RVV+ +SGGVDS+V A LLK GYDVIGV ++ ++S+ + G+ C +D Sbjct: 3 KRVVLGLSGGVDSAVAAYLLKEQGYDVIGVFMRNWDSQLNNDILGNPTNDNDICPQEEDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ V + + + D+ + + + V F Y G TP P + CN+ +KF L Sbjct: 63 NDAKAVAECLGIPIKRVDFIKEYWDHVFTYFLDEYRKGRTPNPDILCNKHIKFKAFLDFA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + L AD +ATGHY + + Y G D +M + +D +DQ+YFL QQQL + FPLG Sbjct: 123 KTLNADYIATGHYAQVKHYQGAD----SVMLKGLDNNKDQTYFLCQLNQQQLQNSLFPLG 178 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252 ++ K VR +ARE+ L +ADK DS ICF+ + + + ++ A G +V + G + Sbjct: 179 EIDKTEVRRIARELNLPVADKKDSTGICFIGERDFKEFLQNYIP--AQAGKMVDIETGNV 236 Query: 253 LGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308 +G H+GI+ YTIGQR+GLG+ G+ FVV D + + + + ++ L + ++ Sbjct: 237 IGDHSGIMYYTIGQRKGLGIGGPGDAWFVVGKDYDKNVLYICQGDQKDWLYSTGALITDV 296 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVF 367 NW+ +D C K R Q P+ ++ ++D VY+ F+K V GQA VF Sbjct: 297 NWIA----STKPIDKIACNAKFRYRQPDNPIQLEFIDEDTVYLTFDKPIKAVTPGQAAVF 352 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396 Y D LGGG I + + L Sbjct: 353 YDGDI----CLGGGTIETVYKDGQPIKYL 377 >gi|241889855|ref|ZP_04777153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Gemella haemolysans ATCC 10379] gi|241863477|gb|EER67861.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Gemella haemolysans ATCC 10379] Length = 370 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 129/383 (33%), Positives = 195/383 (50%), Gaps = 21/383 (5%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 + +VVV MSGGVDSSV A LLK+ GYDVIGV ++ + + +G C A +D D Sbjct: 2 NSNKKVVVGMSGGVDSSVTAYLLKQQGYDVIGVFMKNWEEKDD---RGVCLAEKDYEDVI 58 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 +VC+ +++ +Y ++E+ + + V F Y G TP P + CN+ +KF L LG Sbjct: 59 KVCEQLDIPYYSINFEKEYWDKVFTYFLDEYKKGRTPNPDIMCNKEIKFKVFLEYAEDLG 118 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY R + G+ R+M R +D +DQ+YFL Q Q+ ++ FP+G+++K Sbjct: 119 ADYVATGHYARVKDVDGE-----RLMLRGVDNNKDQTYFLSQLKQHQIKNILFPVGELEK 173 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + VR +A E GL A K DS ICF+ + + + + + A G +V L+G + G H Sbjct: 174 KDVRKIAEEAGLATAKKKDSTGICFIGEKNFREFLSQYLP--AQGGKMVDLDGNVRGEHI 231 Query: 258 GIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G+++YTIGQR GLG+ GE F D ++ + V E + Sbjct: 232 GLMHYTIGQRHGLGIGGTKDTEGEAWFACGKDLENNVLYVCQGFHNEKLYSDSLLAS-SL 290 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSD 371 ++ + F C K R Q V V+ D+ V V +++ V GQA VFY D Sbjct: 291 SFTTKNPQPNKFTCTAKFRYRQPDTEVEVEVLEDNKVKVVYKEPVRAVTPGQAVVFYDGD 350 Query: 372 SNEARVLGGGIISGSKRSDAVEE 394 LGG II + + Sbjct: 351 V----CLGGAIIDEVYKDGKKLQ 369 >gi|161525855|ref|YP_001580867.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia multivorans ATCC 17616] gi|189349424|ref|YP_001945052.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia multivorans ATCC 17616] gi|205811411|sp|A9AH63|MNMA_BURM1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|160343284|gb|ABX16370.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia multivorans ATCC 17616] gi|189333446|dbj|BAG42516.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Burkholderia multivorans ATCC 17616] Length = 381 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 124/375 (33%), Positives = 177/375 (47%), Gaps = 27/375 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D Sbjct: 2 SKRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K Sbjct: 119 ETIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A ++GL A K DS ICF+ + + D + R G + +G+++G H G Sbjct: 174 KVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKLVGEHIG 231 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT GQR+G+G+ GEP FV D S+ + V L + ++W Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRELVAGNVSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + +GF C K R Q + + + F ++ V GQ+ V Y Sbjct: 292 VAG----EPPAEGFACGAKTRYRQADAACTFARAGGERFSLAFADAQWAVTPGQSAVLYD 347 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 348 GEI----CLGGGIIE 358 >gi|134093604|ref|YP_001098679.1| tRNA-specific 2-thiouridylase MnmA [Herminiimonas arsenicoxydans] gi|205816908|sp|A4G213|MNMA_HERAR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|133737507|emb|CAL60550.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Herminiimonas arsenicoxydans] Length = 372 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 119/380 (31%), Positives = 178/380 (46%), Gaps = 27/380 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVV+ MSGGVDSSV A LLK GY+VIG+ ++ + S+ C QD DA V Sbjct: 3 KKRVVIGMSGGVDSSVSAWLLKEQGYEVIGLFMKNWEDDDDSE---YCSTRQDWIDAASV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + V ++ +++ V F Y AG TP P V CN +KF L LGAD Sbjct: 60 ADVVGVDIEAVNFAAEYKDRVFAEFLREYEAGRTPNPDVLCNAEIKFKAFLDHAMLLGAD 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ATGHY R R + + + +D +DQSYFL Q QL FPLG+++K Sbjct: 120 MIATGHYARVREVTSGPDAGQVQLLKAVDASKDQSYFLHRLNQAQLSKTLFPLGEIRKTE 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++ L A K DS ICF+ + + + + R + G + +G I+G H G+ Sbjct: 180 VRKIAEQLQLPNASKKDSTGICFIGERPFREFLNRYLSY--QPGPMKTPDGTIVGEHVGL 237 Query: 260 INYTIGQRRGLGVAM----------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 YT+GQR+G+G+ P +V D ++ + + L + Sbjct: 238 SFYTLGQRKGIGLGGMKTHKNTDGNSGPWYVARKDVANNTLYIVQGHDHPWLLSSALSAG 297 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 +++W+ + + K R Q V D + + F+ + V GQ+ V Sbjct: 298 QMSWVAGRAPSEEL-----VAAKTRYRQADVACSQHATADNLALAFDTPQWAVTPGQSAV 352 Query: 367 FYTSDSNEARVLGGGIISGS 386 Y D LGGGII+ S Sbjct: 353 LYQGDV----CLGGGIITAS 368 >gi|114766932|ref|ZP_01445852.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pelagibaca bermudensis HTCC2601] gi|114540839|gb|EAU43901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseovarius sp. HTCC2601] Length = 380 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 200/382 (52%), Positives = 258/382 (67%), Gaps = 12/382 (3%) Query: 5 EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64 +A LNSL L K P + RVVVAMSGGVDSSVVAA+L +GYDV+GVTLQLY+ A +K Sbjct: 4 DAPTLNSLGLPKPPSETRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAALAKK 63 Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 G+CCAG D++DARRV + + HYV DYE FR+AVI FA SY G TP+PC+ CN V Sbjct: 64 GACCAGIDIHDARRVAEQMGFPHYVLDYENIFRDAVIDEFAESYLGGATPVPCIRCNERV 123 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 KF DLL + L AD +ATGHYI+ VGD G + D RDQSYFLF+TT +Q Sbjct: 124 KFKDLLETAKDLDADCMATGHYIQR--MVGDQGAE---LHSAADANRDQSYFLFSTTPEQ 178 Query: 185 LCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243 L LRFPLG +K K R+LA + GL +ADK DSQDICFV G Y V++++ G A G Sbjct: 179 LDYLRFPLGHLKSKAETRELAAKYGLSVADKPDSQDICFVPDGNYASVIEKLRPGAAEPG 238 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302 +IVH +G++LG H G+I+YTIGQRRGLG+ + EPL+VV LD ++ +VIVGP+E L + Sbjct: 239 EIVHADGRVLGEHRGVIHYTIGQRRGLGIGGLTEPLYVVKLDVDNKQVIVGPKEMLATRK 298 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361 + +REINWLGD F + + VK+RS++ P V+ ++ V+ +E GV+ Sbjct: 299 VPVREINWLGDAPFTSR--EEWHLSVKVRSTRPPREAIVRPISETEAEVELVVAEEGVSP 356 Query: 362 GQACVFYTSDSNEARVLGGGII 383 GQACVFY DS +R+ GGG I Sbjct: 357 GQACVFYDPDS--SRIFGGGWI 376 >gi|165975614|ref|YP_001651207.1| tRNA-specific 2-thiouridylase MnmA [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|205811090|sp|B0BS63|MNMA_ACTPJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|165875715|gb|ABY68763.1| tRNA(5-methylaminomethyl-2-thiouridylate)methyltransferase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 389 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 126/391 (32%), Positives = 211/391 (53%), Gaps = 29/391 (7%) Query: 4 SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63 + +L + L +N K +V++ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 14 THFAKLTAEQLAENAK-KKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD- 71 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 C A D+ DA+ V D + + + ++ + + V F + Y AG TP P + CN+ Sbjct: 72 --YCTAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKE 129 Query: 124 VKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 +KF L LGAD +ATGHY+R GDD + + R +D +DQSYFL+ + Sbjct: 130 IKFKAFLEYAAEDLGADYIATGHYVRR---SGDDNNAQ--LLRGLDANKDQSYFLYTLSH 184 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 +Q+ FP+GD++K VR +A ++GL A K DS ICF+ + K+ D + R A Sbjct: 185 KQVGQSLFPVGDIEKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQP 242 Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES 297 G+I ++G+++GRH+G++ +T+GQR+GLG+ +P +VV D ++ ++V Sbjct: 243 GEIRTVDGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHD 302 Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFE 353 L + +++W+ + + +C VK R Q + +Q +DD + V F+ Sbjct: 303 NSALLSSGLIATQLHWVD----RQPIRENLRCTVKTRYRQTDIACEIQPIDDDTIRVIFD 358 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + ++ V GQ+ VFY D LGGG+I Sbjct: 359 EPQIAVTPGQSAVFYQGDV----CLGGGVIE 385 >gi|114332296|ref|YP_748518.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosomonas eutropha C91] gi|122313046|sp|Q0ADM9|MNMA_NITEC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|114309310|gb|ABI60553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosomonas eutropha C91] Length = 361 Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats. Identities = 127/374 (33%), Positives = 184/374 (49%), Gaps = 27/374 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK+ GYDVIG+ ++ + + C + +D DA V D Sbjct: 5 RVVVGMSGGVDSSVAALLLKQQGYDVIGLFMKNWEDDDTDE---YCSSRKDFLDAASVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ ++ +R V F + Y AG TP P V CN +KF L LGAD + Sbjct: 62 ILDIPLEAVNFSAEYRERVFSLFLAEYQAGRTPNPDVLCNSEIKFKAFLDHALALGADWI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + G + + + D +DQSYFL+ QQQL FP+G + K VR Sbjct: 122 ATGHYAQVHEING-----QFQLLKGEDGNKDQSYFLYRLNQQQLSRTIFPIGHLYKREVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + GL + K DS ICF+ + + + + R G+I L+GQI+G H G++ Sbjct: 177 KIAHKHGLPNSTKKDSTGICFIGERPFREFLNRYLP--VDPGEIHTLDGQIVGEHQGLMY 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR+GLG+ +P FV D ++ + V +L + +++W+ Sbjct: 235 YTIGQRQGLGIGGIREGSEQPWFVSGKDMQTNVLYVVQGHDHPALLRSSLTAADLSWISG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + V KIR Q P ++ D + F + GV GQ+ V Y Sbjct: 295 APPHQSWV----YAAKIRYRQTDAPCAIIRLEHDSCQIGFAAPQWGVTPGQSVVIY---- 346 Query: 373 NEARVLGGGIISGS 386 LGGGII+ S Sbjct: 347 ESKVCLGGGIITDS 360 >gi|325847124|ref|ZP_08169950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481096|gb|EGC84141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 369 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 137/382 (35%), Positives = 205/382 (53%), Gaps = 24/382 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 +K+ KD++V+V +SGGVDSSV A LLK +GYDV G+ ++ ++ + G C A D Sbjct: 3 NKDKKDIKVIVGVSGGVDSSVAALLLKEEGYDVSGIFMKNWDEEDEN---GVCTAEVDYE 59 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA +VC+ I + +Y ++E+ + + V F Y G TP P + CN+ +KF L + Sbjct: 60 DAVKVCNQIGIPYYSINFEKEYYDRVFSYFLDEYKKGRTPNPDIMCNKEIKFKAFLDYAK 119 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD LATGHY R G+ M R +D +DQ+YFL +Q Q+ D+ FP+G+ Sbjct: 120 DLGADYLATGHYARVDRSSGE-----TKMLRGIDSNKDQTYFLSQLSQDQIKDVLFPVGN 174 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 + K+ VR +A+E L ADK DS ICF+ + + + + A EG+IV +G I+G Sbjct: 175 LDKKEVRKIAKENNLATADKKDSTGICFIGERNFNEFLSNYLP--AKEGNIVDTDGNIMG 232 Query: 255 RHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 +H G++ +TIGQRRGLG+ GE FV D + +IV E L +R+ ++ Sbjct: 233 KHYGLMYHTIGQRRGLGIGGEGEAWFVCGKDLEKNELIVCQGKNNEKLFSNRLIGSNLSS 292 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + + + F C K R Q + V+ DDG V + ++K+ V GQA VFY Sbjct: 293 IS----AEGLKKEFDCTCKFRYRQKDINSHVKILDDGKVEIRYDKT-KAVTPGQAAVFYD 347 Query: 370 SDSNEARVLGGGIISGSKRSDA 391 + LG II D Sbjct: 348 GEV----CLGSCIIDEVYNGDK 365 >gi|56708687|ref|YP_170583.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp. tularensis SCHU S4] gi|110671159|ref|YP_667716.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp. tularensis FSC198] gi|254875562|ref|ZP_05248272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] gi|56605179|emb|CAG46310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. tularensis SCHU S4] gi|110321492|emb|CAL09693.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. tularensis FSC198] gi|254841561|gb|EET19997.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. tularensis MA00-2987] Length = 381 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 129/374 (34%), Positives = 199/374 (53%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ Sbjct: 24 ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQA 80 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F Y AG TP P + CN+ +KF LS LG Sbjct: 81 VCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 140 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY ++RL + + +D +DQ+YFL+ Q+QL FP+G+++K Sbjct: 141 DYIATGHYAQTRLAAD----GSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 196 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ + + + A +G+I NG +G H+G Sbjct: 197 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 254 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310 ++ YTIGQR+GLG+ + P F D ++ + + G L + E++W Sbjct: 255 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 314 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + A D F+C K+R Q V+ N DG V V F++ + + GQ+ VFY Sbjct: 315 VAGM----APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 370 Query: 370 SDSNEARVLGGGII 383 D LGGG+I Sbjct: 371 DDV----CLGGGVI 380 >gi|221202286|ref|ZP_03575320.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia multivorans CGD2M] gi|221209100|ref|ZP_03582094.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia multivorans CGD2] gi|221171004|gb|EEE03457.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia multivorans CGD2] gi|221177860|gb|EEE10273.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia multivorans CGD2M] Length = 381 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 124/375 (33%), Positives = 177/375 (47%), Gaps = 27/375 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D Sbjct: 2 SKRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDYAMSLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K Sbjct: 119 ETIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A ++GL A K DS ICF+ + + D + R G + +G+++G H G Sbjct: 174 KVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKLVGEHIG 231 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT GQR+G+G+ GEP FV D S+ + V L + ++W Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIPSNTLYVVQGHDHPWLLSRELVAGNVSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + +GF C K R Q + + + F ++ V GQ+ V Y Sbjct: 292 VAG----EPPAEGFACGAKTRYRQADAACTFARAGGERFSLAFADAQWAVTPGQSAVLYD 347 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 348 GEV----CLGGGIIE 358 >gi|115350645|ref|YP_772484.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia ambifaria AMMD] gi|122323996|sp|Q0BI73|MNMA_BURCM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|115280633|gb|ABI86150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia ambifaria AMMD] Length = 384 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 124/390 (31%), Positives = 184/390 (47%), Gaps = 29/390 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V Sbjct: 3 KRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + ++ +++ V F Y+AG TP P V CN +KF L L A+ Sbjct: 60 ADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDAE 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K Sbjct: 120 MIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTK 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A ++GL A K DS ICF+ + + D + R G + +G+++G H G+ Sbjct: 175 VREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVIGEHIGL 232 Query: 260 INYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 YT GQR+G+G+ GEP FV D S+ + V L ++ ++W+ Sbjct: 233 AFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRQLVAGNVSWV 292 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTS 370 + DGF C K R Q + + + + F+ ++ V GQ+ V Y Sbjct: 293 AG----EPPADGFSCGAKTRYRQADAACSFGRADGERFSLAFDDAQWAVTPGQSAVLYDG 348 Query: 371 DSNEARVLGGGIIS--GSKRSDAVEESLLS 398 + LGGGII + + + + Sbjct: 349 EI----CLGGGIIEFAATGQPGQTAPAPAA 374 >gi|259503048|ref|ZP_05745950.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus antri DSM 16041] gi|259168914|gb|EEW53409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus antri DSM 16041] Length = 377 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 133/388 (34%), Positives = 196/388 (50%), Gaps = 25/388 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RVVV MSGGVDSSV A LLKR GYDVIGV ++ ++ + G C A +D D + Sbjct: 5 SQTRVVVGMSGGVDSSVTALLLKRQGYDVIGVFMKNWDD---TDENGVCTATEDYKDVAK 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V I + +Y ++E+ + + V F + Y G TP P V CN+ +KF + QLGA Sbjct: 62 VAAKIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQLGA 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + D R + R D +DQ+YFL QL + FPL K Sbjct: 122 DYVATGHYADLKR----DADGRMHLMRAADQHKDQTYFLSQLDYHQLDKVLFPLARYTKP 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 +R++A+E GL A+K DS ICF+ + G + + + + A G++ ++G+++G+H Sbjct: 178 QIREIAKEAGLATAEKKDSVGICFIGEDGHFREFLSQYLP--AQPGNMETVDGKVVGQHM 235 Query: 258 GIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINW 310 G++ YTIGQRRGLG+ EP FV+ D + + VG E L + +I+W Sbjct: 236 GLMYYTIGQRRGLGLGGNKESNEPWFVIGKDIKKNVLYVGQGYHNEHLYATHLEASDIHW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR--NDDGVYVDFEKSEVGVASGQACVFY 368 + D + F C K R Q V V V+ +D V V+F+ + GQA FY Sbjct: 296 VDDVVSRFG--REFHCTAKFRYRQKDVGVTVKIAADDQMVTVNFDDPARAITPGQAVAFY 353 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LG II + + + + Sbjct: 354 DG----QECLGSAIIDRAYNASRQLQYV 377 >gi|115314034|ref|YP_762757.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp. holarctica OSU18] gi|254366943|ref|ZP_04982980.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. holarctica 257] gi|115128933|gb|ABI82120.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. holarctica OSU18] gi|134252770|gb|EBA51864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. holarctica 257] Length = 381 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 129/374 (34%), Positives = 199/374 (53%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ Sbjct: 24 ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQA 80 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F Y AG TP P + CN+ +KF LS LG Sbjct: 81 VCDSIGIPFKKINFTAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 140 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY ++RL + + +D +DQ+YFL+ Q+QL FP+G+++K Sbjct: 141 DYIATGHYAQTRLAAD----GSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 196 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ + + + A +G+I NG +G H+G Sbjct: 197 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 254 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310 ++ YTIGQR+GLG+ + P F D ++ + + G L + E++W Sbjct: 255 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 314 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + A D F+C K+R Q V+ N DG V V F++ + + GQ+ VFY Sbjct: 315 VAGM----APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 370 Query: 370 SDSNEARVLGGGII 383 D LGGG+I Sbjct: 371 DDV----CLGGGVI 380 >gi|126737635|ref|ZP_01753365.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseobacter sp. SK209-2-6] gi|126721028|gb|EBA17732.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseobacter sp. SK209-2-6] Length = 381 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 191/386 (49%), Positives = 252/386 (65%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + T LNSL K P + RVVVAMSGGVDSSVVAA L GYDV+GVTLQLY+ A Sbjct: 1 MALDNDTPLNSLGFAKPPAETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + HYV DYE F++AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL + L AD +ATGHYI+ + G++ + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETAKDLEADCMATGHYIQRMM-----GEQGPELHSAEDANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K++ R++A + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 TPEQLDYLRFPLGHLPSKDATREMAAQYGLAVADKPDSQDICFVPDGNYASVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IVH +G++LG H G+I+YTIGQRRGLG+ + EPL+VV LD + +V+VGP++ L Sbjct: 236 AEPGEIVHSDGRVLGTHEGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDKKQVVVGPKDLL 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 I +REINWLGD F + VK+RS++ P ++ + V+ E Sbjct: 296 ATRTIPVREINWLGDAPFTSQ--KEWHLKVKVRSTRPPREAIIRPLTETTAEVELLTPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 G++ GQACVFY S+ +R+ GGG I Sbjct: 354 GISPGQACVFYASE--GSRIFGGGWI 377 >gi|167564053|ref|ZP_02356969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia oklahomensis EO147] Length = 409 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 128/423 (30%), Positives = 182/423 (43%), Gaps = 58/423 (13%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V Sbjct: 3 KRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 60 ADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAR 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K Sbjct: 120 TIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKTK 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A ++GL A K DS ICF+ + + D + R G + +G+ +G H G+ Sbjct: 175 VREIAEQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGL 232 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 YT GQR+G+G+ GEP FV D S+ + V L + ++W+ Sbjct: 233 AFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRELVAGNVSWV 292 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPV------------------------------FV 341 + DG +C K R Q Sbjct: 293 AG----EPPADGVRCGAKTRYRQADAACAFGRATSGRAAPGRAASGQHASDGGAPSGVAA 348 Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS--GSKRSDAVEESLLSV 399 + + + F++ + V GQ+ V Y D LGGGII + R DA Sbjct: 349 DASGERFSLTFDEPQWAVTPGQSAVLYDGDV----CLGGGIIESAATGRPDAAHAGGAPA 404 Query: 400 IGD 402 + + Sbjct: 405 LAE 407 >gi|300703072|ref|YP_003744674.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia solanacearum CFBP2957] gi|299070735|emb|CBJ42030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia solanacearum CFBP2957] Length = 370 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 128/387 (33%), Positives = 188/387 (48%), Gaps = 28/387 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RVVV MSGGVDSSV A LLK+ GY+V+G+ ++ + S+ C QD D Sbjct: 2 SGKRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I V ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADLIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K Sbjct: 119 DTIATGHYARVREVDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A E+GL A K DS ICF+ + + D + R G I G+ +G+H G Sbjct: 174 RVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPIKTPEGKTIGQHIG 231 Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT+GQR+G+G+ G+ +V D ++ + V L H ++ +++W Sbjct: 232 LAFYTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYT 369 + +G K R Q P V D + + F +++ V GQ+ V Y Sbjct: 292 VAGH----PPAEGTHLAAKTRYRQADAPCTVACATDGALALAFVEAQWAVTPGQSAVLYD 347 Query: 370 SDSNEARVLGGGIISGSKRSDAVEESL 396 + LGGGII+ + + A E ++ Sbjct: 348 GEV----CLGGGIIACAD-ALAAERAV 369 >gi|282159938|gb|ADA79329.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. tularensis NE061598] Length = 378 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 129/374 (34%), Positives = 199/374 (53%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ Sbjct: 21 ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQA 77 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F Y AG TP P + CN+ +KF LS LG Sbjct: 78 VCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 137 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY ++RL + + +D +DQ+YFL+ Q+QL FP+G+++K Sbjct: 138 DYIATGHYAQTRLAAD----GSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 193 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ + + + A +G+I NG +G H+G Sbjct: 194 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 251 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310 ++ YTIGQR+GLG+ + P F D ++ + + G L + E++W Sbjct: 252 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 311 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + A D F+C K+R Q V+ N DG V V F++ + + GQ+ VFY Sbjct: 312 VAGM----APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 367 Query: 370 SDSNEARVLGGGII 383 D LGGG+I Sbjct: 368 DDV----CLGGGVI 377 >gi|167010288|ref|ZP_02275219.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. holarctica FSC200] Length = 378 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 129/374 (34%), Positives = 199/374 (53%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ Sbjct: 21 ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQA 77 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F Y AG TP P + CN+ +KF LS LG Sbjct: 78 VCDSIGIPFKKINFTAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 137 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY ++RL + + +D +DQ+YFL+ Q+QL FP+G+++K Sbjct: 138 DYIATGHYAQTRLAAD----GSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 193 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ + + + A +G+I NG +G H+G Sbjct: 194 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 251 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310 ++ YTIGQR+GLG+ + P F D ++ + + G L + E++W Sbjct: 252 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 311 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + A D F+C K+R Q V+ N DG V V F++ + + GQ+ VFY Sbjct: 312 VAGM----APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 367 Query: 370 SDSNEARVLGGGII 383 D LGGG+I Sbjct: 368 DDV----CLGGGVI 377 >gi|260433794|ref|ZP_05787765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Silicibacter lacuscaerulensis ITI-1157] gi|260417622|gb|EEX10881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Silicibacter lacuscaerulensis ITI-1157] Length = 381 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 191/386 (49%), Positives = 251/386 (65%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + LNSL K P + RVVVAMSGGVDSSVVAA L GYDV+GVTLQLY+ A Sbjct: 1 MALDTEPPLNSLGFAKPPSETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + HYV DYE F++AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 VKF DLL + L AD +ATGHYI+ ++ G + D RDQSYFLF+T Sbjct: 121 KERVKFKDLLETAKDLEADCMATGHYIQRKM-----GPNGPELHCAEDANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K++ R++A + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 TPEQLEFLRFPLGHLPSKDATREMAAQYGLSVADKPDSQDICFVPNGNYASVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IVH +G++LG+H+G+I+YTIGQRRGLG+ + EPL+VV LD + +V+VGP+E L Sbjct: 236 AEPGEIVHADGRVLGQHDGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDRKQVVVGPKELL 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 I +REINWLGD F + VK+RS++ P ++ D V+ E Sbjct: 296 ATRTIPVREINWLGDEPFTSQ--KEWHVSVKVRSTRPPREAIIRPLTDTTAEVELLTPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 GV+ GQACVFY ++ +R+ GGG I Sbjct: 354 GVSPGQACVFY--ETGGSRIFGGGWI 377 >gi|167912477|ref|ZP_02499568.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 112] Length = 356 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 124/372 (33%), Positives = 175/372 (47%), Gaps = 30/372 (8%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D I + Sbjct: 1 MSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVADLIGID 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 ++ +++ V F Y+AG TP P V CN +KF L LGA +ATGHY Sbjct: 58 VEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTIATGHY 117 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 R R G R + + D +DQSYFL Q QL FPLG++ K VR++A + Sbjct: 118 ARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVREIAAQ 172 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 +GL A K DS ICF+ + + D + R G + +G+ +G H G+ YT GQ Sbjct: 173 IGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAFYTFGQ 230 Query: 267 RRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFED 318 R+G+G+ GEP FV D S+ + V L + ++W+ + Sbjct: 231 RKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG----E 286 Query: 319 AVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 DG +C K R Q P Q D+ + F++ + V GQ+ V Y D Sbjct: 287 PPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWAVTPGQSAVLYDGDV-- 344 Query: 375 ARVLGGGIISGS 386 LGGGII + Sbjct: 345 --CLGGGIIESA 354 >gi|172059678|ref|YP_001807330.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia ambifaria MC40-6] gi|205811349|sp|B1YTE9|MNMA_BURA4 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|171992195|gb|ACB63114.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia ambifaria MC40-6] Length = 389 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 124/379 (32%), Positives = 180/379 (47%), Gaps = 32/379 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V Sbjct: 3 KRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + ++ +++ V F Y+AG TP P V CN +KF L L A+ Sbjct: 60 ADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDAE 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K Sbjct: 120 MIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTK 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A ++GL A K DS ICF+ + + D + R G + +G+++G H G+ Sbjct: 175 VREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVIGEHIGL 232 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 YT GQR+G+G+ GEP FV D S+ + V L ++ ++W+ Sbjct: 233 AFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRQLVAGNVSWV 292 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV------QRNDDGVYVDFEKSEVGVASGQAC 365 + DGF C K R Q + + + + F+ ++ V GQ+ Sbjct: 293 AG----EPPADGFSCGAKTRYRQADAACSFGRPALGRADGERFSLTFDDAQWAVTPGQSA 348 Query: 366 VFYTSDSNEARVLGGGIIS 384 V Y + LGGGII Sbjct: 349 VLYDGEI----CLGGGIIE 363 >gi|254363194|ref|ZP_04979243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mannheimia haemolytica PHL213] gi|153095088|gb|EDN75639.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mannheimia haemolytica PHL213] Length = 387 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 124/392 (31%), Positives = 206/392 (52%), Gaps = 29/392 (7%) Query: 4 SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63 + +L L +N K +V++ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 12 THFPKLTPEQLAENSK-KKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD- 69 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 C A ++ DA+ V D + + + ++ + + V F + Y AG TP P + CN+ Sbjct: 70 --YCTAAAELADAQAVADKLGMKLHKINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKE 127 Query: 124 VKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 +KF L LGAD +ATGHY+R D + R +D +DQSYFL+A + Sbjct: 128 IKFKAFLEYAAEDLGADYIATGHYVRRTSDDQD-----AKLLRGLDENKDQSYFLYALNK 182 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R A Sbjct: 183 KQIGQSLFPVGEIEKPIVRAIAEDLGLATAKKKDSTGICFIGERKFKDFLARFLP--AQP 240 Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES 297 G+I + G+++GRH+G++ +T+GQR+GLG+ +P +VV D ++ +IV Sbjct: 241 GEIRTVEGKLVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLIVAQGHD 300 Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFE 353 L + +++ W+ + + +C VK R Q + +Q DD + V F+ Sbjct: 301 NSALLSSGLIAKQLTWVDM----QPLRENLRCTVKTRYRQADIACEIQVIDDETIRVMFD 356 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIISG 385 + ++ V GQ+ VFY + LGGGII Sbjct: 357 EPQIAVTPGQSAVFYLGEV----CLGGGIIES 384 >gi|134298633|ref|YP_001112129.1| tRNA-specific 2-thiouridylase MnmA [Desulfotomaculum reducens MI-1] gi|172044262|sp|A4J2K1|MNMA_DESRM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|134051333|gb|ABO49304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfotomaculum reducens MI-1] Length = 367 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 138/373 (36%), Positives = 205/373 (54%), Gaps = 14/373 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDAR 77 RV+VAMSGGVDSSV AALL++ GYD++GVT+Q+++ CC+ V DAR Sbjct: 4 QKRVLVAMSGGVDSSVTAALLQQQGYDIVGVTMQIWDPEVTVVGDDYVGCCSLTAVDDAR 63 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV + + + +YV ++ E F VI F Y G TP PC+ CNR +KF LL RQ+G Sbjct: 64 RVANVLGIPYYVLNFRELFTEKVIQYFVDEYFQGRTPNPCIACNRFIKFEALLQRARQMG 123 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D +ATGHY R + +R + + +D ++DQSY L+ TQ Q+ PL D K Sbjct: 124 FDYIATGHYARLGYS---EEFQRYTVKKALDDKKDQSYVLYGFTQDQIAHTLMPLADYTK 180 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + VR +A+EMGL K +SQ+ICFV Y + + + G G L G +LG H Sbjct: 181 DQVRGIAKEMGLPTYSKPESQEICFVHDNNYRNFLDERSQGGIKPGPFKDLAGNVLGEHK 240 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI YTIGQRRGLG+A GE +V+ +D +++ V VG E++ + E N++ Sbjct: 241 GIPFYTIGQRRGLGLATGERTYVIDIDPDNNVVTVGSEEAIWGTELIASENNFI----LF 296 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + + ++R + P P ++ +G V V F+ + + GQA V+Y D Sbjct: 297 ENLTGPQELEAQVRYNSKPSPAIIEPYGEGLVKVTFKYPQRAITPGQAVVYYQGD----Y 352 Query: 377 VLGGGIISGSKRS 389 ++GGG I + + Sbjct: 353 LVGGGTIEKTIKQ 365 >gi|255524816|ref|ZP_05391766.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium carboxidivorans P7] gi|296188647|ref|ZP_06857035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium carboxidivorans P7] gi|255511483|gb|EET87773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium carboxidivorans P7] gi|296046911|gb|EFG86357.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium carboxidivorans P7] Length = 358 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 138/367 (37%), Positives = 212/367 (57%), Gaps = 15/367 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARR 78 + +VV+ MSGGVDSSV A LLK+ GYDVIGVT+Q++ + +G CC+ V DARR Sbjct: 2 NKKVVIGMSGGVDSSVAAYLLKQQGYDVIGVTMQVWQEDEEYEAVEGGCCSLSAVEDARR 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V +++ YV ++++ F+ VI F Y G TP PCV CN+ +KF LL +LGA Sbjct: 62 VAYKLDIPFYVMNFKDIFKKNVIDYFIDEYMQGRTPNPCVACNKFIKFDALLKKAMELGA 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY V + R I+ + D ++DQ+Y L+ TQ QL P G KKE Sbjct: 122 DYVATGHYA-----VVEKHDNRYILRKSEDDKKDQTYALYNLTQFQLEHTLMPCGVYKKE 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A+E+GL + +K DS++ICF+ + +K+ G+ V G +LGRH G Sbjct: 177 RIREIAKEIGLLVHNKKDSEEICFIPDNDHGGYIKKQVPSKVKPGNFVDKEGNVLGRHKG 236 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I+ YTIGQR+GLG+A G P++V ++ + V++G + + ++IN++ D Sbjct: 237 IVYYTIGQRKGLGIAFGVPMYVTDINPLRNEVVLGSENDIFKTELIAKDINFI----PFD 292 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 ++ + K+R S P ++ D+G V V+FE + + GQ+ VFY +D + Sbjct: 293 SLQGTMEIQAKVRYSAKPSRAWITALDNGRVKVEFENKQRAITKGQSVVFYNND----LL 348 Query: 378 LGGGIIS 384 LGGG+I Sbjct: 349 LGGGVID 355 >gi|254492565|ref|ZP_05105737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylophaga thiooxidans DMS010] gi|224462457|gb|EEF78734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylophaga thiooxydans DMS010] Length = 367 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 118/376 (31%), Positives = 187/376 (49%), Gaps = 26/376 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +VVV +SGGVDSSV A LL + V G+ ++ + C +D DA Sbjct: 3 ENKKVVVGLSGGVDSSVAALLLNQQHEQVEGLFMKNWVDFADESE---CTVEEDRKDAMS 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V +T+ + + ++ + + V F Y AG TP P + CNR +KF L +LG Sbjct: 60 VAETVGIDFHEANFAMEYWDYVFKHFLDEYRAGRTPNPDILCNREIKFKAFLDHAMELGG 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 ++ATGHY R G + + + +D ++DQSYFL+ QQQL FPLG++ K Sbjct: 120 VLIATGHYARVAERDG-----KFHLLKGLDDKKDQSYFLYTLGQQQLSRTLFPLGELPKT 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A + G DK DS ICF+ + + + + R A G++ +G+ +G H G Sbjct: 175 EVRQIAEQAGFINHDKKDSTGICFIGERHFREFLSRYIP--AQPGEMRTPDGEKIGEHAG 232 Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSS--RVIVGPRESLEVHRIYLREINWL 311 ++ YT+GQR+GLG+ GEP FV D + V+ G L + +++W+ Sbjct: 233 LMYYTLGQRQGLGIGGRKNSTGEPWFVAGKDMENRILYVVQGDHPWLWSQNLTAEQLSWV 292 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 + + K R Q P + ++D+G ++V+F+ + V GQ+ VFY Sbjct: 293 AG----EEPEFPCRAAAKTRYRQPDQPCTISKDDNGLIHVEFDDKQRAVTPGQSVVFYQQ 348 Query: 371 DSNEARVLGGGIISGS 386 D LGGGII + Sbjct: 349 DD----CLGGGIIVST 360 >gi|221214491|ref|ZP_03587462.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia multivorans CGD1] gi|221165748|gb|EED98223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia multivorans CGD1] Length = 381 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 124/375 (33%), Positives = 177/375 (47%), Gaps = 27/375 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D Sbjct: 2 SKRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K Sbjct: 119 ETIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A ++GL A K DS ICF+ + + D + R G + +G+++G H G Sbjct: 174 KVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKLVGEHIG 231 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT GQR+G+G+ GEP FV D S+ + V L + ++W Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIPSNTLYVVQGHDHPWLLSRGLVAGNVSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + +GF C K R Q + + + F ++ V GQ+ V Y Sbjct: 292 VAG----EPPAEGFACGAKTRYRQADAACTFARAGGERFSLAFADAQWAVTPGQSAVLYD 347 Query: 370 SDSNEARVLGGGIIS 384 + LGGGII Sbjct: 348 GEI----CLGGGIIE 358 >gi|256846987|ref|ZP_05552433.1| tRNA methyl transferase [Lactobacillus coleohominis 101-4-CHN] gi|256715651|gb|EEU30626.1| tRNA methyl transferase [Lactobacillus coleohominis 101-4-CHN] Length = 377 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 133/390 (34%), Positives = 195/390 (50%), Gaps = 25/390 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + RVVV MSGGVDSSV A LLKR GYDV+GV ++ ++ + G C A +D D Sbjct: 3 DNSHTRVVVGMSGGVDSSVTALLLKRQGYDVVGVFMKNWDD---TDENGVCTATEDYKDV 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +V I + +Y ++E+ + + V F + Y G TP P V CN+ +KF + QL Sbjct: 60 AKVATQIGIPYYSVNFEKEYWDRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + D + R D +DQ+YFL +QL + FPL + Sbjct: 120 GADYVATGHYADLKR----DADGNMHLMRAKDQHKDQTYFLSQLDHEQLDHVMFPLANYT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K +R +A+E GL +ADK DS ICF+ + G + + + + A G + ++G+++G Sbjct: 176 KPEIRQIAKEAGLAVADKKDSVGICFIGEDGHFREFLSQYLP--AQPGKMETIDGKVVGE 233 Query: 256 HNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 H G++ YTIGQRRGLG+ EP FV+ D + +IVG L + +I Sbjct: 234 HAGLMYYTIGQRRGLGLGGNKESNEPWFVIGKDIKRNVLIVGQGYSNPHLYATHLEASDI 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACV 366 +W+ D + F C K R Q V V +DD V V F+ + GQA V Sbjct: 294 HWVDDVVSRYG--HHFHCTAKFRYRQVDEGVTVDISDDETKVTVTFDDPARAITPGQAVV 351 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396 FY LG II + + + + Sbjct: 352 FYDG----QECLGSAIIDRAFSHERQLQYI 377 >gi|85702766|ref|ZP_01033870.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseovarius sp. 217] gi|85671694|gb|EAQ26551.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseovarius sp. 217] Length = 383 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 198/386 (51%), Positives = 256/386 (66%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + LNSL K P + RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A Sbjct: 1 MALDTNKPLNSLGFPKPPAETRVVVAMSGGVDSSVVAAHLASEGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + + HYV DYE FR+AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGVDIHDARRVAEEMGFPHYVLDYENIFRDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL R L AD +ATGHYI+ +L G + + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETARDLEADCMATGHYIQRKL-----GSQGPELHCASDSARDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K + R+LA + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 TPEQLDYLRFPLGHLPSKAATRELAAQYGLQVADKPDSQDICFVPNGNYASVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IVH +G++LG+H G+I+YTIGQRRGLG+ + EPL+VV LD ++ RVIVGP+E L Sbjct: 236 AEPGEIVHADGRVLGQHEGVIHYTIGQRRGLGIGGLEEPLYVVRLDVDARRVIVGPKEML 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + LREINWLGD ++ VK+RS++ P ++ + V+ E Sbjct: 296 STRTVPLREINWLGDVPMTSQT--EWQVSVKVRSTRPPREAVLRPISATEATVELLTPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 GV+ GQACVFY +++ +RVLGGG I Sbjct: 354 GVSPGQACVFY--ETDGSRVLGGGWI 377 >gi|254465357|ref|ZP_05078768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacterales bacterium Y4I] gi|206686265|gb|EDZ46747.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacterales bacterium Y4I] Length = 381 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 193/386 (50%), Positives = 252/386 (65%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + T +NSL K P + RVVVAMSGGVDSSVVAA L GYDV+GVTLQLY+ A Sbjct: 1 MALDHNTTVNSLGFAKPPSETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + HYV DYE F++AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL + L AD +ATGHYI+ ++ G + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETAKDLEADCMATGHYIQRKM-----GPNGPELHSAEDANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K++ R++A + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 TPEQLDYLRFPLGHLPSKDATREMAAQYGLAVADKPDSQDICFVPDGNYASVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IVH +G++LG H G+I+YTIGQRRGLG+ + EPL+VV LD + +V+VGP+E L Sbjct: 236 AEPGEIVHSDGRVLGSHEGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDKKQVVVGPKELL 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 I +REINWLGD F D + VK+RS++ P ++ D V+ E Sbjct: 296 ATRTIPVREINWLGDEPFTSR--DEWHLKVKVRSTRPPREAIIRPLTDTTAEVELLTPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 G++ GQACVFY S+ +R+ GGG I Sbjct: 354 GISPGQACVFYASE--GSRIFGGGWI 377 >gi|317056376|ref|YP_004104843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ruminococcus albus 7] gi|315448645|gb|ADU22209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ruminococcus albus 7] Length = 360 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 151/368 (41%), Positives = 212/368 (57%), Gaps = 13/368 (3%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+ AMSGGVDSS LL GY+V G T+ LYN+ R+ SCC+ DV DAR V Sbjct: 4 KKVLAAMSGGVDSSTAVKLLLDAGYEVAGATMHLYNNEDIGIREKSCCSLNDVEDARLVA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + +VF++ + F+ V+ F +Y AG TP PC++CN+ +KF L R LG D Sbjct: 64 LKLGIDFHVFNFSDEFKTCVMDNFVDTYLAGGTPNPCIECNKHLKFGRFLDRARMLGFDY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+ S DD R ++ R D +DQSY L+ TQ QL FP+G+M K + Sbjct: 124 IATGHYVTSHY---DDASGRWLLKRSADSSKDQSYVLYGMTQDQLAHTIFPVGEMSKPEI 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E GL A K DSQDICF+ G Y + AG EGDIV +G +LGRH G+I Sbjct: 181 RAIAEENGLINAHKRDSQDICFIPDGDYASFITE-RAGEQPEGDIVLSDGTVLGRHKGLI 239 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +YTIGQRRG+GV+ EPLFV D S+R+I+G E + R+ ++N++ + + Sbjct: 240 HYTIGQRRGVGVSYSEPLFVTAKDMVSNRLIMGTAEQVCSKRLSAHDVNFITF----EKL 295 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 +C + R Q VP V ++ V V+F+ V+ GQ+ VFY + V+G Sbjct: 296 TAPLRCTAQTRYHQKDVPCTVFPTGENTVEVEFDTPHKAVSKGQSVVFYDGE----YVIG 351 Query: 380 GGIISGSK 387 GG ISG++ Sbjct: 352 GGTISGTE 359 >gi|190149429|ref|YP_001967954.1| tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303249862|ref|ZP_07336066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307249368|ref|ZP_07531361.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251687|ref|ZP_07533592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307260616|ref|ZP_07542308.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262747|ref|ZP_07544374.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914560|gb|ACE60812.1| putative tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302651429|gb|EFL81581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306858590|gb|EFM90653.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860884|gb|EFM92892.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306869693|gb|EFN01478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871892|gb|EFN03609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 389 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 125/391 (31%), Positives = 211/391 (53%), Gaps = 29/391 (7%) Query: 4 SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63 + +L + L +N K +V++ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 14 THFAKLTAEQLAENAK-KKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD- 71 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 C A D+ DA+ V D + + + ++ + + V F + Y AG TP P + CN+ Sbjct: 72 --YCTAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKE 129 Query: 124 VKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 +KF L LGAD +ATGHY+R GDD + + R +D +DQSYFL+ + Sbjct: 130 IKFKAFLEYAAEDLGADYIATGHYVRR---SGDDNNAQ--LLRGLDANKDQSYFLYTLSH 184 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 +Q+ FP+GD++K VR +A ++GL A K DS ICF+ + K+ D + R A Sbjct: 185 KQVGQSLFPVGDIEKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQP 242 Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES 297 G+I ++G+++GRH+G++ +T+GQR+GLG+ +P +VV D ++ ++V Sbjct: 243 GEIRTVDGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHD 302 Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFE 353 L + +++W+ + + +C VK R Q + +Q +DD + V F+ Sbjct: 303 NSALLSSGLIATQLHWVD----RQPIRENLRCTVKTRYRQTDIACEIQPIDDDTIRVIFD 358 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + ++ V GQ+ VFY + LGGG+I Sbjct: 359 EPQIAVTPGQSAVFYQGEV----CLGGGVIE 385 >gi|307256183|ref|ZP_07537970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865364|gb|EFM97260.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 389 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 125/391 (31%), Positives = 211/391 (53%), Gaps = 29/391 (7%) Query: 4 SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63 + +L + L +N K +V++ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 14 THFAKLTAEQLAENAK-KKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD- 71 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 C A D+ DA+ V D + + + ++ + + V F + Y AG TP P + CN+ Sbjct: 72 --YCTAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKE 129 Query: 124 VKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 +KF L LGAD +ATGHY+R GDD + + R +D +DQSYFL+ + Sbjct: 130 IKFKAFLEYAAEDLGADYIATGHYVRR---SGDDNNVQ--LLRGLDANKDQSYFLYTLSH 184 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 +Q+ FP+GD++K VR +A ++GL A K DS ICF+ + K+ D + R A Sbjct: 185 KQVGQSLFPVGDIEKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQP 242 Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES 297 G+I ++G+++GRH+G++ +T+GQR+GLG+ +P +VV D ++ ++V Sbjct: 243 GEIRTVDGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHD 302 Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFE 353 L + +++W+ + + +C VK R Q + +Q +DD + V F+ Sbjct: 303 NSALLSSGLIATQLHWVD----RQPIRENLRCTVKTRYRQTDIACEIQPIDDDTIRVIFD 358 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + ++ V GQ+ VFY + LGGG+I Sbjct: 359 EPQIAVTPGQSAVFYQGEV----CLGGGVIE 385 >gi|27262188|gb|AAN87375.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Heliobacillus mobilis] Length = 376 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 147/364 (40%), Positives = 203/364 (55%), Gaps = 14/364 (3%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVVAMSGGVDSSV AALL GY+VIGVTLQ++ +G CC+ V DARRV T Sbjct: 5 VVVAMSGGVDSSVTAALLLEKGYNVIGVTLQIWPKDAPEGAEGGCCSLSAVEDARRVAFT 64 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + HYV ++ + F VI F Y AG+TP PC+ CNR +KF LL + LGAD +A Sbjct: 65 LGIPHYVMNFRDYFEEEVINYFGQEYLAGQTPNPCIRCNRVIKFEGLLQKSLALGADKVA 124 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R D ++R + + D ++DQSY LF TQ+QL FPLG K +R+ Sbjct: 125 TGHYARIEY---DAERQRYRLGQAKDAKKDQSYVLFNMTQEQLSRTMFPLGGFTKPEIRE 181 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHNGIIN 261 +AR L +A K DSQ+ICF+ Y + +R G V +G ++G H G+ Sbjct: 182 MARAYNLAVASKPDSQEICFIPDNDYRRFLQERYPENSFAPGPFVDTSGNVIGTHQGLPF 241 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YT+GQR+GLG A G P +VV LD + VI+G E + R+ ++NW+ + + Sbjct: 242 YTVGQRKGLGQAFGYPAYVVGLDVARNAVIIGRDEDVFSRRLLAGDLNWI----EVNRLT 297 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + KIR S ++ +G V V+FE+ + + GQA VFY D ++G Sbjct: 298 APMEVQAKIRYSALKAKAIIRPVGEGDQVIVEFEEKQRAITPGQAVVFYQGD----WIVG 353 Query: 380 GGII 383 GG I Sbjct: 354 GGTI 357 >gi|208780006|ref|ZP_03247349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella novicida FTG] gi|208744010|gb|EDZ90311.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella novicida FTG] Length = 359 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 131/374 (35%), Positives = 203/374 (54%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ Sbjct: 2 ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F Y AG TP P + CN+ +KF LS LG Sbjct: 59 VCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R+R+ +DG + + + +D +DQ+YFL+ Q+QL FP+G+++K Sbjct: 119 DYIATGHYARTRVL--EDGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ + + + A +G+I NG +G H+G Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 232 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310 ++ YTIGQR+GLG+ + P F D ++ + + G L + E++W Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + A D F+C K+R Q V+ N DG V V F++ + + GQ+ VFY Sbjct: 293 VAGM----APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348 Query: 370 SDSNEARVLGGGII 383 D LGGG+I Sbjct: 349 DDV----CLGGGVI 358 >gi|169825283|ref|YP_001692894.1| 5-methylaminomethyl-2-thiouridylate- methyltransferase [Finegoldia magna ATCC 29328] gi|205816864|sp|B0S3R4|MNMA_FINM2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|167832088|dbj|BAG09004.1| 5-methylaminomethyl-2-thiouridylate- methyltransferase [Finegoldia magna ATCC 29328] Length = 366 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 130/380 (34%), Positives = 206/380 (54%), Gaps = 24/380 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + ++VVV +SGGVDSSV A LLK+ GYDV+G+ ++ ++ G C A +D DA Sbjct: 2 DNSKIKVVVGISGGVDSSVAALLLKQQGYDVVGIFMKNWDETDDD---GVCTAEEDYKDA 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V + I + +Y ++E+ + + V F Y G TP P + CN+ +KF L +L Sbjct: 59 VAVANEIGIDYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAMKL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R + GDDG + + R +D +DQ+YFL TQ+Q+ ++ FP+G+++ Sbjct: 119 GADYVATGHYAR--IERGDDGVK---LLRGLDNNKDQTYFLSQLTQEQIKNVMFPVGELQ 173 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ VR++A++ L ADK DS ICF+ + + + + A +G+IV ++G I+G+H Sbjct: 174 KKEVREIAKKYNLATADKKDSTGICFIGERNFNEFLSHYLP--AKQGNIVDVDGNIMGKH 231 Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312 NG++ +TIGQRRGLG+ G FV + ++ +IV E L +++Y + Sbjct: 232 NGLMYHTIGQRRGLGIGGDGAAWFVCGKNLATNELIVCQGEDNPLLYSNKLYASQF---- 287 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 + + F C K R Q + V+ DD V V ++ + V GQA VFY + Sbjct: 288 ETSLNHLDRNEFDCTAKFRYRQKDIKAHVKFIDDTHVEVTYDDT-KAVTPGQAAVFYDGE 346 Query: 372 SNEARVLGGGIISGSKRSDA 391 +G II D Sbjct: 347 V----CIGSAIIDEVYNGDK 362 >gi|269468097|gb|EEZ79807.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [uncultured SUP05 cluster bacterium] Length = 367 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 117/380 (30%), Positives = 184/380 (48%), Gaps = 27/380 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 K+ +++V +SGGVDSSV A LL GYDV + ++ + + + C A QD+ DA Sbjct: 6 PNKNNKIIVGLSGGVDSSVAALLLLEQGYDVEALFMKNWEEDDSEEH---CSAEQDLSDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++V D +++ + ++ + + V F + G TP P V CN+ +KF L L Sbjct: 63 QKVADKLSIKLHTINFSADYWDDVFDHFLKEHKKGRTPNPDVLCNQKIKFKVFLEHAILL 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R + + +D +DQSYFL QQQL + FPLG++ Sbjct: 123 GADKIATGHYARIV-----EKDNVYSLKTGLDNAKDQSYFLHLLNQQQLSNSLFPLGEID 177 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A E ADK DS ICF+ + + ++ GD+V +G+ + H Sbjct: 178 KSKVREIATEHNFITADKKDSTGICFIGERNFSQFLQTYLPK--QPGDVVDQDGKFIKHH 235 Query: 257 NGIINYTIGQRRGLGVA-----MGEPLFVVYL--DKNSSRVIVGPRESLEVHRIYLREIN 309 +G+ YT+GQR+GL + GEP FV D N V+ G L + + + Sbjct: 236 DGLAFYTMGQRKGLEIGGGFGQSGEPWFVADKCIDSNELIVVQGDHPLLYHNTLNASSAH 295 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 W+ + C KIR Q + + ++ + + FE+ + + GQ+ VFY Sbjct: 296 WIN-----NPPKLPLTCTAKIRYRQQSQSCTIVQEENKHLKIVFEQPQRAITPGQSIVFY 350 Query: 369 TSDSNEARVLGGGIISGSKR 388 +D LGG II + Sbjct: 351 DNDV----CLGGAIIETREN 366 >gi|205829088|sp|A7ICB9|MNMA_XANP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 389 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 211/383 (55%), Positives = 261/383 (68%), Gaps = 5/383 (1%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 T L LD D +P RVVVAMSGGVDSSVVA L R GYDV+GVTLQLY+ +A+ R+G+ Sbjct: 2 TDLPLLDTDGDPASTRVVVAMSGGVDSSVVAGLYARAGYDVVGVTLQLYDHGEAAHRRGA 61 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 CCAGQD+YDA V T+ + HYV DYE RF+ VI FA+SYA+G TP+PCVDCNRTVKF Sbjct: 62 CCAGQDIYDASEVARTLGIPHYVLDYESRFKEEVIDRFAASYASGVTPIPCVDCNRTVKF 121 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 DLL+ +LGA LATGHY+ SR RR + R + RDQSYFL+ATT QL Sbjct: 122 RDLLATAEELGARYLATGHYVASRALPD----GRRGLYRAAEEARDQSYFLYATTAAQLE 177 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 LRFPLG+M+K VR LA E GL +ADK DSQDICFV G Y VV+R+ A GDIV Sbjct: 178 RLRFPLGEMRKADVRALAAEFGLPVADKPDSQDICFVPGGDYAQVVQRLRPEAAEPGDIV 237 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 HL+G++LGRH G+++YTIGQR+GLG+A EPL+V+ +D +V VGPR +L V I + Sbjct: 238 HLDGRVLGRHRGVMHYTIGQRKGLGIATPEPLYVIAIDAARQQVRVGPRAALSVSAITID 297 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQAC 365 ++NWLGD F DA+ +VK+RS++ PVP + R DG V E GVA GQAC Sbjct: 298 DVNWLGDIPFTDALARQADVYVKVRSTRPPVPAHLARATDGTPAVHLAVGEEGVAPGQAC 357 Query: 366 VFYTSDSNEARVLGGGIISGSKR 388 V Y AR+LGGG I ++R Sbjct: 358 VLYDDAGAAARLLGGGTIMRAER 380 >gi|317495071|ref|ZP_07953443.1| tRNA methyl transferase [Gemella moribillum M424] gi|316914843|gb|EFV36317.1| tRNA methyl transferase [Gemella moribillum M424] Length = 370 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 132/381 (34%), Positives = 192/381 (50%), Gaps = 21/381 (5%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK+ GYDVIGV ++ + + +G C A +D D +V Sbjct: 4 GKKVVVGMSGGVDSSVTAYLLKQQGYDVIGVFMKNWEEKDD---RGGCVAEKDYEDVIKV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C+ +++ +Y ++E+ + N V F Y G TP P + CN+ +KF L LGAD Sbjct: 61 CEQLDIPYYSINFEKEYWNKVFTYFLDEYKKGRTPNPDIMCNKEIKFKVFLEYAEDLGAD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + D +R++ R +D +DQ+YFL Q Q+ ++ FP+G+++K+ Sbjct: 121 YVATGHYARVK-----DEDNQRLLLRGVDNNKDQTYFLSQLKQHQIKNILFPVGELEKKD 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E GL A K DS ICF+ + + + + + A G +V L+G I G H G+ Sbjct: 176 VRRIAEEAGLATAKKKDSTGICFIGEKNFREFLSQYLP--AKSGKMVDLDGNIRGEHVGL 233 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 ++YTIGQR GLG+ GE F D + + V E + Sbjct: 234 MHYTIGQRHGLGIGGTKDTDGEAWFACGKDLEKNILYVCQGFHNEKLYSDSLLAS-SLSF 292 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 +D + F C K R Q V V+ DD V V ++ V GQA VFY D Sbjct: 293 TTKDPQPNKFTCTAKFRYRQPDTEVDVEILEDDKVKVVYKNPVRAVTPGQAVVFYDGDV- 351 Query: 374 EARVLGGGIISGSKRSDAVEE 394 LGG II + + Sbjct: 352 ---CLGGAIIDEVYKDGEKLQ 369 >gi|54297299|ref|YP_123668.1| tRNA-specific 2-thiouridylase MnmA [Legionella pneumophila str. Paris] gi|81601865|sp|Q5X5H6|MNMA_LEGPA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|53751084|emb|CAH12495.1| hypothetical protein lpp1344 [Legionella pneumophila str. Paris] Length = 361 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 120/376 (31%), Positives = 186/376 (49%), Gaps = 27/376 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK GY V G+ ++ + + C A +D+ DA+ VC+ Sbjct: 4 KVIVGMSGGVDSSVAAWLLKEQGYQVEGLFMKNWEQDDHNDF---CPAAKDLADAQAVCN 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + ++ + + + V F S Y G TP P V CN+ +KF+ L+ LGAD + Sbjct: 61 QLRIPLHTVNFSKEYWDRVFAYFLSEYEKGRTPNPDVLCNKEIKFNAFLNHALNLGADYI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY ++ + + + D E+DQ+YFL A + L FP+GD K +R Sbjct: 121 ATGHYAKNTIE-----GSIGYLFKAKDREKDQTYFLHAVEPEALSKTIFPIGDFTKPQIR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 + A+++GL K DS ICF+ + ++ + +A G+I G+ LG+H+G++ Sbjct: 176 EFAKQLGLVTHAKKDSTGICFIGEKRFKTFLNEFI--LAKPGEIKSTGGKTLGQHDGLMF 233 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313 YT+GQR+GLG+ EP +VV D S+ + V L + I+WL D Sbjct: 234 YTLGQRQGLGIGGLQNSTDEPWYVVDKDIASNTLYVAQGSQHPMLYSQGLICGPIHWLAD 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDS 372 + CF K R Q + D+ + YV F + + GQ VFY + Sbjct: 294 YENHLPLT----CFAKTRYRQTDQACMISPPDNNLHYVIFSSPQRAITPGQFIVFYEKN- 348 Query: 373 NEARVLGGGIISGSKR 388 + LGG I R Sbjct: 349 ---QCLGGATIEQIIR 361 >gi|166031729|ref|ZP_02234558.1| hypothetical protein DORFOR_01429 [Dorea formicigenerans ATCC 27755] gi|166028182|gb|EDR46939.1| hypothetical protein DORFOR_01429 [Dorea formicigenerans ATCC 27755] Length = 359 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 137/369 (37%), Positives = 199/369 (53%), Gaps = 16/369 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDA 76 + +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ K +G CC V DA Sbjct: 2 EKKKVVVGMSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEDEFKQQEEGGCCGLSAVEDA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV + + +YV +++ F+ VI F Y G TP PC+ CNR VK+ LL+ ++ Sbjct: 62 RRVAARLGIPYYVMNFKNEFKKYVIDYFIDDYLHGRTPNPCIACNRYVKWESLLTRAMEI 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + R + + +DQ+Y L+ TQ QL P+G Sbjct: 122 GADYIATGHYAQVEQLPS----GRYSIKTSVTSMKDQTYALYNLTQDQLSKTLMPVGKYS 177 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN-AGIALEGDIVHLNGQILGR 255 K+ VR +A +GL +A K DSQDICFV G Y ++ AG G+ V +G I+G+ Sbjct: 178 KDEVRKMAENIGLLVAHKPDSQDICFVPDGDYATYIEENTAAGSIRPGNFVTSDGTIVGQ 237 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H GII+YT+GQR+GLG+++G P FV+ + ++ V+VG E + +N++ Sbjct: 238 HKGIIHYTVGQRKGLGLSLGHPAFVLEIRPETNEVVVGTNEESMSRYVRANHVNFMSVAD 297 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 + + + KIR + V+R +D + F++ + GQA V Y + Sbjct: 298 IDGK----KRAWGKIRYNHKGAWCTVERTGEDEILCTFDEPVRAITPGQALVLYDGE--- 350 Query: 375 ARVLGGGII 383 VLGGG I Sbjct: 351 -YVLGGGTI 358 >gi|209964264|ref|YP_002297179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodospirillum centenum SW] gi|259495835|sp|B6ISD0|MNMA_RHOCS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|209957730|gb|ACI98366.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodospirillum centenum SW] Length = 392 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 205/404 (50%), Positives = 256/404 (63%), Gaps = 23/404 (5%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSL DK P+D RVVVAMSGGVDSSV AALLK GYDV+G+TLQLY+ RKG+CC Sbjct: 1 MNSLGFDKAPQDTRVVVAMSGGVDSSVTAALLKEQGYDVVGITLQLYDHGLTVGRKGACC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+YDAR+V D I++ HYV DYE RF +VI FA SY GETP+PCV CN+ VKF D Sbjct: 61 AGQDIYDARQVADRIDIPHYVLDYESRFGQSVIDDFADSYLRGETPIPCVRCNQRVKFRD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R LGAD LATGHY R G + R D RDQSYFLFATT QL L Sbjct: 121 LLAQARDLGADCLATGHYARRVA-----GPTGPALHRGADPARDQSYFLFATTPAQLDYL 175 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFP+G + K R LA +GL +ADK DSQDICFV G Y VV+++ G G+IVHL Sbjct: 176 RFPIGHLPKSETRALAERLGLAVADKPDSQDICFVPAGNYAQVVEKLRPGAVEPGEIVHL 235 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMG--------EPLFVVYLDKNSSRVIVGPRESLEV 300 +G++LGRH+G+I YT+GQRRGLG+ +PL+VV ++ + RV+VGPR +L Sbjct: 236 DGRVLGRHDGVIRYTVGQRRGLGIGGRRTPEGEELDPLYVVRVEPETRRVVVGPRTALAR 295 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGV 359 R+ +RE+NWLG D VK+RS+Q +P V D G V + + GV Sbjct: 296 DRVLVREVNWLGGTDTADVP-----VTVKLRSAQPALPARVSLTADGGAVVTLTQPQYGV 350 Query: 360 ASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403 A GQA VFY D RVLGGG I ++ S A+ ++ + Sbjct: 351 APGQAAVFYQGD----RVLGGGWIVRAEASPALADAPIPAGAGT 390 >gi|167629936|ref|YP_001680435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Heliobacterium modesticaldum Ice1] gi|205816855|sp|B0TFA7|MNMA_HELMI RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|167592676|gb|ABZ84424.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Heliobacterium modesticaldum Ice1] Length = 385 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 149/364 (40%), Positives = 200/364 (54%), Gaps = 14/364 (3%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVVAMSGGVDSSV AALL GYDVIGVTLQ++ +G CC+ V DA+RV Sbjct: 5 VVVAMSGGVDSSVTAALLLEQGYDVIGVTLQIWPKDAPEGAEGGCCSLSAVEDAKRVASK 64 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + V HYV ++ + F VI F Y AG+TP PC+ CNR +KF LL + LGA +A Sbjct: 65 LGVPHYVLNFRDYFETEVIEYFGREYLAGQTPNPCIRCNRVIKFEGLLQKSLALGAAKVA 124 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R D R + R +D +DQSY LF TQ+QL FPLG K +R+ Sbjct: 125 TGHYARIE---QDSATGRYRLGRGIDANKDQSYALFNMTQEQLSRTLFPLGGFTKPEIRE 181 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHNGIIN 261 A ++GL +A K DSQ+ICF+ Y + +R G V G ++G H G+ Sbjct: 182 KAAQLGLAVASKPDSQEICFIPDNDYRRFLEERYPDHRFQPGPFVDQEGNVIGTHRGLPF 241 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YT+GQR+GLGVA G P +V+ LD + V++GP E+++ R+ ++NW+ + Sbjct: 242 YTVGQRKGLGVAFGFPAYVIALDVEHNAVVIGPDEAVKGRRLLADDLNWIDIA----GLK 297 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + KIR S P + DG V V+F + + GQA VFY D V+G Sbjct: 298 APMEVEAKIRYSASPAIAVISPVKDGSAVIVEFAAPQRAITPGQAVVFYRGD----WVVG 353 Query: 380 GGII 383 GG I Sbjct: 354 GGTI 357 >gi|253998326|ref|YP_003050389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylovorus sp. SIP3-4] gi|313200400|ref|YP_004039058.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylovorus sp. MP688] gi|253985005|gb|ACT49862.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylovorus sp. SIP3-4] gi|312439716|gb|ADQ83822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylovorus sp. MP688] Length = 361 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 121/377 (32%), Positives = 181/377 (48%), Gaps = 27/377 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RVVV +SGGVDSSV A LLK GYDV+G+ ++ + + C A QD+ DA Sbjct: 2 SKKRVVVGLSGGVDSSVTALLLKEQGYDVVGLFMKNWEDDDTDE---YCPAKQDLIDAAA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ + ++ V F Y AG TP P + CN +KF L LGA Sbjct: 59 VADKIGIELEAVNFSKEYKERVFQNFLEEYQAGRTPNPDIFCNSEIKFKAFLDHAMGLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ATGHY + R + + + D +DQSYFL+ Q QL FPLG + K Sbjct: 119 DLIATGHYAQVR-----EKNGLFQLLKAEDGSKDQSYFLYRLNQLQLSKTLFPLGGLLKR 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A GL A K DS ICF+ + + + + R G++ G+++G H G Sbjct: 174 EVREIAHREGLVTAGKKDSTGICFIGERPFREFLNRYLPRE--PGEMQTPEGKVVGEHEG 231 Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSS--RVIVGPRESLEVH-RIYLREINW 310 ++ YT+GQR+GL + GEP FV D + V+ G L + + +++W Sbjct: 232 LMYYTLGQRQGLKIGGSRESNGEPWFVAGKDMQRNVLIVVQGHDHPLLCNDGLVASQLHW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYT 369 + E V K R Q P + R ++ + F + + + GQ+ V Y Sbjct: 292 IAGEAPETHWV----YAAKTRYRQPDAPCEIDRLEESETEIRFGQPQWAITPGQSAVVY- 346 Query: 370 SDSNEARVLGGGIISGS 386 LGGGII+ + Sbjct: 347 ---ESQVCLGGGIITRA 360 >gi|293609749|ref|ZP_06692051.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292828201|gb|EFF86564.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 377 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 121/379 (31%), Positives = 198/379 (52%), Gaps = 23/379 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ V Sbjct: 2 QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAV 58 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + + ++ + + V F + YAAG TP P + CN+ +KF L LGAD Sbjct: 59 ADKIGIKLHTANFAMEYWDRVFELFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGAD 118 Query: 140 VLATGHYIRS-RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R G+ + R +D +DQ+YFL A +++ FP+G+++K Sbjct: 119 FIATGHYARRGETAYNSKGEAYAPLLRGVDNNKDQTYFLHAVHGREINKTLFPVGEIEKP 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E+ L A K DS ICF+ + ++ D +K+ A G IV G+ +G H+G Sbjct: 179 EVRRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDTGKEVGEHHG 236 Query: 259 IINYT-----IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 ++ YT GL A FV++ D ++R++VG ++ +++ I+W Sbjct: 237 LMYYTLGQRGGIGLGGLKGAAEGAWFVLHKDLANNRLVVGQGHEHPLMQSTQLWSESIDW 296 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD---GVYVDFEKSEVGVASGQACVF 367 + ++ V+G +C K R Q + +++ GV V+F++ + V GQ+ VF Sbjct: 297 VAGE--QNIPVEGLRCTAKTRYRQPDQTCTIFIDENTEHGVRVEFDEPQRAVTPGQSVVF 354 Query: 368 YTSDSNEARVLGGGIISGS 386 Y+ + LGGG+I + Sbjct: 355 YSDEV----CLGGGVIHHT 369 >gi|89255515|ref|YP_512876.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp. holarctica LVS] gi|156501449|ref|YP_001427514.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp. holarctica FTNF002-00] gi|290954256|ref|ZP_06558877.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp. holarctica URFT1] gi|295312320|ref|ZP_06803107.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp. holarctica URFT1] gi|122501358|sp|Q2A5X5|MNMA_FRATH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|166234852|sp|A7N9A5|MNMA_FRATF RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205821924|sp|Q0BP64|MNMA_FRATO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|89143346|emb|CAJ78513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. holarctica LVS] gi|156252052|gb|ABU60558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. holarctica FTNF002-00] Length = 359 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 129/374 (34%), Positives = 199/374 (53%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ Sbjct: 2 ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F Y AG TP P + CN+ +KF LS LG Sbjct: 59 VCDSIGIPFKKINFTAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY ++RL + + +D +DQ+YFL+ Q+QL FP+G+++K Sbjct: 119 DYIATGHYAQTRLAAD----GSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ + + + A +G+I NG +G H+G Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 232 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310 ++ YTIGQR+GLG+ + P F D ++ + + G L + E++W Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + A D F+C K+R Q V+ N DG V V F++ + + GQ+ VFY Sbjct: 293 VAGM----APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348 Query: 370 SDSNEARVLGGGII 383 D LGGG+I Sbjct: 349 DDV----CLGGGVI 358 >gi|163741163|ref|ZP_02148555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Phaeobacter gallaeciensis 2.10] gi|161385516|gb|EDQ09893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Phaeobacter gallaeciensis 2.10] Length = 381 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 193/386 (50%), Positives = 254/386 (65%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M +LNSL K P + RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A Sbjct: 1 MAQDAHPQLNSLGFAKPPAETRVVVAMSGGVDSSVVAAHLADEGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + HYV DYE F++AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL R L AD +ATGHYI+ + DG + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETARDLEADCMATGHYIQRK-----DGPNGPELHSAEDANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K++ R++A + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 TPEQLDYLRFPLGHLPSKDATREMASQYGLAVADKPDSQDICFVPNGDYASVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IVH +G++LG H+G+I+YTIGQRRGLG+ + EPL+VV LD ++ +V+VGP+E L Sbjct: 236 AEPGEIVHSDGRVLGTHDGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDTKQVVVGPKELL 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 I +REINWLGD F D + VK+RS++ P ++ ++ V+ E Sbjct: 296 ATRTIPVREINWLGDEPFTSR--DEWHLKVKVRSTRPPRDAIIRPISETEAEVELLTPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 G++ GQACVFY + +R+ GGG I Sbjct: 354 GISPGQACVFYAGE--GSRIFGGGWI 377 >gi|187930950|ref|YP_001890934.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp. mediasiatica FSC147] gi|224457896|ref|ZP_03666369.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp. tularensis MA00-2987] gi|254371318|ref|ZP_04987320.1| hypothetical protein [Francisella tularensis subsp. tularensis FSC033] gi|71658014|sp|Q5NEF9|MNMA_FRATT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205816649|sp|B2SEJ7|MNMA_FRATM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205822328|sp|Q14FW2|MNMA_FRAT1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|151569558|gb|EDN35212.1| hypothetical protein FTBG_01100 [Francisella tularensis subsp. tularensis FSC033] gi|187711859|gb|ACD30156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. mediasiatica FSC147] Length = 359 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 129/374 (34%), Positives = 199/374 (53%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ Sbjct: 2 ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F Y AG TP P + CN+ +KF LS LG Sbjct: 59 VCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY ++RL + + +D +DQ+YFL+ Q+QL FP+G+++K Sbjct: 119 DYIATGHYAQTRLAAD----GSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ + + + A +G+I NG +G H+G Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 232 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310 ++ YTIGQR+GLG+ + P F D ++ + + G L + E++W Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + A D F+C K+R Q V+ N DG V V F++ + + GQ+ VFY Sbjct: 293 VAGM----APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348 Query: 370 SDSNEARVLGGGII 383 D LGGG+I Sbjct: 349 DDV----CLGGGVI 358 >gi|325122971|gb|ADY82494.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter calcoaceticus PHEA-2] Length = 377 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 121/379 (31%), Positives = 198/379 (52%), Gaps = 23/379 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ V Sbjct: 2 QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAV 58 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + + ++ + + V F + YAAG TP P + CN+ +KF L LGAD Sbjct: 59 ADKIGIKLHTANFAMEYWDRVFELFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGAD 118 Query: 140 VLATGHYIRS-RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R G+ + R +D +DQ+YFL A +++ FP+G+++K Sbjct: 119 FIATGHYARRGETAYNSKGEAYAPLLRGVDNNKDQTYFLHAVHGREINKTLFPVGEIEKP 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E+ L A K DS ICF+ + ++ D +K+ A G IV G+ +G H+G Sbjct: 179 EVRRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDTGKEVGEHHG 236 Query: 259 IINYT-----IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 ++ YT GL A FV++ D ++R++VG ++ +++ I+W Sbjct: 237 LMYYTLGQRGGIGLGGLKGAAEGAWFVLHKDLANNRLVVGQGHEHPLMQSTQLWSESIDW 296 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD---GVYVDFEKSEVGVASGQACVF 367 + ++ V+G +C K R Q + +++ GV V+F++ + V GQ+ VF Sbjct: 297 VAGE--QNIPVEGLRCTAKTRYRQPDQACTIFIDENTEHGVRVEFDEPQRAVTPGQSVVF 354 Query: 368 YTSDSNEARVLGGGIISGS 386 Y+ + LGGG+I + Sbjct: 355 YSDEV----CLGGGVIHHT 369 >gi|148358920|ref|YP_001250127.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase [Legionella pneumophila str. Corby] gi|296106968|ref|YP_003618668.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Legionella pneumophila 2300/99 Alcoy] gi|205816878|sp|A5IBN1|MNMA_LEGPC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|148280693|gb|ABQ54781.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase [Legionella pneumophila str. Corby] gi|295648869|gb|ADG24716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Legionella pneumophila 2300/99 Alcoy] Length = 361 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 120/376 (31%), Positives = 186/376 (49%), Gaps = 27/376 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK GY V G+ ++ + + C A +D+ DA+ VC+ Sbjct: 4 KVIVGMSGGVDSSVAAWLLKEQGYQVEGLFMKNWEQDDHND---YCPAAKDLADAQAVCN 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + ++ + + + V F S Y G TP P V CN+ +KF+ L+ LGAD + Sbjct: 61 QLRIPLHTVNFSKEYWDRVFAYFLSEYEKGRTPNPDVLCNKEIKFNAFLNHALNLGADYI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY ++ + + + D E+DQ+YFL A + L FP+GD K +R Sbjct: 121 ATGHYAKNTIE-----GSIGYLFKAKDREKDQTYFLHAVEPEALSKTIFPIGDFTKPQIR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 + A+++GL K DS ICF+ + ++ + +A G+I G+ LG+H+G++ Sbjct: 176 EFAKQLGLVTHAKKDSTGICFIGEKRFKTFLNEFI--LAKPGEIKSTGGKTLGQHDGLMF 233 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313 YT+GQR+GLG+ EP +VV D S+ + V L + I+WL D Sbjct: 234 YTLGQRQGLGIGGLQNSTDEPWYVVDKDIASNTLYVAQGSQHPMLYSQGLICGPIHWLAD 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDS 372 + CF K R Q + D+ + YV F + + GQ VFY + Sbjct: 294 YENHLPLT----CFAKTRYRQTDQACMISPPDNNLHYVMFSSPQRAITPGQFIVFYEKN- 348 Query: 373 NEARVLGGGIISGSKR 388 + LGG I R Sbjct: 349 ---QCLGGATIEQIIR 361 >gi|297588098|ref|ZP_06946742.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Finegoldia magna ATCC 53516] gi|297574787|gb|EFH93507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Finegoldia magna ATCC 53516] Length = 375 Score = 469 bits (1207), Expect = e-130, Method: Composition-based stats. Identities = 130/380 (34%), Positives = 204/380 (53%), Gaps = 24/380 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + ++VVV +SGGVDSSV A LLK+ GYDV+G+ ++ ++ G C A +D DA Sbjct: 11 DNSKIKVVVGISGGVDSSVAALLLKQQGYDVVGIFMKNWDETDDD---GVCTAEEDYKDA 67 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V + I + +Y ++E+ + + V F Y G TP P + CN+ +KF L +L Sbjct: 68 VTVANEIGIDYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAMKL 127 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R + GDDG + + R +D +DQ+YFL TQ Q+ ++ FP+G+++ Sbjct: 128 GADYVATGHYAR--IERGDDGVK---LLRGLDNNKDQTYFLSQLTQDQIKNVMFPVGELQ 182 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ VR++A++ L ADK DS ICF+ + + + + A +G+IV ++G I+G+H Sbjct: 183 KKEVREIAKKYNLATADKKDSTGICFIGERNFNEFLSHYLP--AKQGNIVDVDGNIMGKH 240 Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312 NG++ +TIGQRRGLG+ G FV + + +IV E L +++Y + Sbjct: 241 NGLMYHTIGQRRGLGIGGDGAAWFVCGKNLEKNELIVCQGEDNPLLYSNKLYASQF---- 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 + + F C K R Q + V+ DD V V ++ + V GQA VFY + Sbjct: 297 ETSLNHLDRNEFDCTAKFRYRQKDIKAHVKFIDDTHVEVTYDDT-KAVTPGQAAVFYDGE 355 Query: 372 SNEARVLGGGIISGSKRSDA 391 +G II D Sbjct: 356 V----CIGSAIIDEVYNGDK 371 >gi|89069527|ref|ZP_01156871.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oceanicola granulosus HTCC2516] gi|89044862|gb|EAR50952.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oceanicola granulosus HTCC2516] Length = 379 Score = 468 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 197/386 (51%), Positives = 251/386 (65%), Gaps = 14/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + + LNSL K P RVVVAMSGGVDSSVVAA L R+GYDV+GVTLQLY+ A Sbjct: 1 MPLDQ--PLNSLGFAKPPAQTRVVVAMSGGVDSSVVAAELAREGYDVVGVTLQLYDHGAA 58 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 RKG+CCAG+D++DARRV + + HYV DYE F++AVI FA SY AG TP+PC+ C Sbjct: 59 LARKGACCAGRDIHDARRVAEEMGFPHYVLDYENVFKDAVIDEFADSYLAGATPVPCIRC 118 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL R L AD +ATGHYI+ ++ G + D RDQSYFLF+T Sbjct: 119 NERVKFKDLLETARDLDADCMATGHYIQRKM-----GAHGPELHSAADAARDQSYFLFST 173 Query: 181 TQQQLCDLRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K R LA GL +ADK DSQDICFV G Y V++++ G Sbjct: 174 TPEQLAYLRFPLGHLASKAETRALAGRHGLPVADKPDSQDICFVPNGNYASVIEKLRPGA 233 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A GDIV G++LG H G+I+YTIGQRRGLG+ + +PL+VV LD ++ RV+VGP+E L Sbjct: 234 AEPGDIVDTEGRVLGTHRGLIHYTIGQRRGLGIGGLADPLYVVKLDVDTRRVVVGPKELL 293 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + +REINWLGDG F + + VK+RS++ P ++ + V+ E Sbjct: 294 ATRTVPVREINWLGDGGFLEG--GPREISVKVRSTRPPTEALLRPISATEAEVELLTPEE 351 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 GV+ GQACVFY ++ RVLGGG I Sbjct: 352 GVSPGQACVFY--ETGGTRVLGGGWI 375 >gi|254253215|ref|ZP_04946533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia dolosa AUO158] gi|124895824|gb|EAY69704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia dolosa AUO158] Length = 382 Score = 468 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 124/375 (33%), Positives = 177/375 (47%), Gaps = 27/375 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D Sbjct: 2 SKRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K Sbjct: 119 ETIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A ++GL A K DS ICF+ + + D + R G + +G+++G H G Sbjct: 174 KVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKLVGEHIG 231 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT GQR+G+G+ GEP FV D S+ + V L ++ ++W Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRQLVAGNVSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + +G C K R Q + + F+ ++ V GQ+ V Y Sbjct: 292 VAG----EPPAEGHACGAKTRYRQADAACTFAGAGGERFSLAFDDAQWAVTPGQSAVLYD 347 Query: 370 SDSNEARVLGGGIIS 384 D LGGGII Sbjct: 348 GDV----CLGGGIIE 358 >gi|223041989|ref|ZP_03612173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus minor 202] gi|223017246|gb|EEF15674.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus minor 202] Length = 389 Score = 468 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 130/391 (33%), Positives = 211/391 (53%), Gaps = 29/391 (7%) Query: 4 SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63 S L +N K +V++ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 14 SHFPPLTEEQRAENAK-KKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD- 71 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 C A D+ DA+ V D + + + ++ + + V F S Y AG TP P + CN+ Sbjct: 72 --YCTAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKE 129 Query: 124 VKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 +KF L LGAD +ATGHY+R GDD + + R +D +DQSYFL+A ++ Sbjct: 130 IKFKAFLEYAAEDLGADYIATGHYVRR---SGDDENAQ--LLRGLDTNKDQSYFLYALSK 184 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R A Sbjct: 185 KQVGQSLFPVGEIEKPIVRKIAEDLGLATAKKKDSTGICFIGERKFKDFLARFLP--AQP 242 Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES 297 G+I ++G+++GRH+G++ +T+GQR+GLG+ EP +VV D ++ ++V Sbjct: 243 GEIRTVDGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEEPFYVVEKDLINNVLVVAQGHD 302 Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFE 353 L + ++NW+ + + +C VK R Q+ +P +Q DD + V F+ Sbjct: 303 NSALLSTGLIASQLNWVDL----QPIRENLRCTVKTRYRQEDIPCEIQPIDDNTIRVMFD 358 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + ++ V GQ+ VFY + LGGGII Sbjct: 359 EPQIAVTPGQSAVFYLGEV----CLGGGIIE 385 >gi|329909731|ref|ZP_08275115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oxalobacteraceae bacterium IMCC9480] gi|327546403|gb|EGF31411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oxalobacteraceae bacterium IMCC9480] Length = 369 Score = 468 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 124/382 (32%), Positives = 184/382 (48%), Gaps = 30/382 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 +VV+ +SGGVDSSV AALLK GY+VIG+ ++ + ++ C QD DA Sbjct: 2 SKKKVVIGLSGGVDSSVSAALLKEQGYEVIGLFMKNWEDDDDAE---YCSTRQDWIDAVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + ++ +++ V F Y AG TP P V CN +KF L LGA Sbjct: 59 VADVLGIDIEAVNFSAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMHLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ATGHY R R D G R + + +D +DQSYFL Q QL FPLG+++K Sbjct: 119 DLIATGHYARVRESASDAG--RFELLKAIDHTKDQSYFLHRLNQAQLSKTLFPLGEIRKT 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A ++GL A K DS ICF+ + + + + R + G + G +G H G Sbjct: 177 EVRKMAEQLGLPNAAKKDSTGICFIGERPFREFLNRYLSY--QPGPMKTPEGDTIGEHVG 234 Query: 259 IINYTIGQRRGLGV----------AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 + YT+GQR+G+G+ + +V D S+ + V L + Sbjct: 235 LSFYTLGQRKGIGIGGIKAHQNANGSSDAWYVARKDIASNTLYVVQGHDHPWLLSASLEA 294 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQA 364 +++W+ +D + K R Q VP V D + + F+ S+ V GQ+ Sbjct: 295 DQLSWIAGAPPDDG-----QLSAKTRYRQADVPCHVGMVDAQRLQLAFDASQWAVTPGQS 349 Query: 365 CVFYTSDSNEARVLGGGIISGS 386 V Y D LGGGII+ S Sbjct: 350 AVLYRGDV----CLGGGIIASS 367 >gi|207721599|ref|YP_002252038.1| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase protein [Ralstonia solanacearum MolK2] gi|206586760|emb|CAQ17345.1| probable trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase protein [Ralstonia solanacearum MolK2] Length = 370 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 126/374 (33%), Positives = 181/374 (48%), Gaps = 27/374 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RVVV +SGGVDSSV A LLK+ GY+V+G+ ++ + S+ C QD D Sbjct: 2 SGKRVVVGLSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I V ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADLIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K Sbjct: 119 DTIATGHYARVREVDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A E+GL A K DS ICF+ + + D + R G I G+ +G+H G Sbjct: 174 RVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPIKTPEGKTIGQHIG 231 Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT+GQR+G+G+ G+ +V D ++ + V L H ++ +++W Sbjct: 232 LAFYTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYT 369 + +G K R Q P V D + + F +++ V GQ+ V Y Sbjct: 292 VAGH----PPAEGTHLAAKTRYRQADAPCTVAGATDGALALAFSEAQWAVTPGQSAVLYD 347 Query: 370 SDSNEARVLGGGII 383 D LGGGII Sbjct: 348 GDV----CLGGGII 357 >gi|118496723|ref|YP_897773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. novicida U112] gi|194324030|ref|ZP_03057805.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. novicida FTE] gi|166234853|sp|A0Q454|MNMA_FRATN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|118422629|gb|ABK89019.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Francisella novicida U112] gi|194321927|gb|EDX19410.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. novicida FTE] Length = 359 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 131/374 (35%), Positives = 203/374 (54%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ Sbjct: 2 ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F Y AG TP P + CN+ +KF LS LG Sbjct: 59 VCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R+R+ +DG + + + +D +DQ+YFL+ Q+QL FP+G+++K Sbjct: 119 DYIATGHYARTRVL--EDGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ + + + A +G+I NG +G H+G Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKFLP--AQKGEIHDENGIKIGMHDG 232 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310 ++ YTIGQR+GLG+ + P F D ++ + + G L + E++W Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + A D F+C K+R Q V+ N DG V V F++ + + GQ+ VFY Sbjct: 293 VAGM----APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348 Query: 370 SDSNEARVLGGGII 383 D LGGG+I Sbjct: 349 DDV----CLGGGVI 358 >gi|92114562|ref|YP_574490.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chromohalobacter salexigens DSM 3043] gi|122419524|sp|Q1QUR7|MNMA_CHRSD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|91797652|gb|ABE59791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chromohalobacter salexigens DSM 3043] Length = 384 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 118/376 (31%), Positives = 184/376 (48%), Gaps = 27/376 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A L GY V G+ ++ ++ ++ C A +D+ DA+ VCD Sbjct: 17 KVIVGMSGGVDSSVTALTLLEQGYAVEGLFMKNWDEDDGTE---YCTAKEDLADAQAVCD 73 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 T+ ++ + ++ + + V F + Y AG TP P + CNR +KF L LGA+ + Sbjct: 74 TLGITLHTANFAAEYWDNVFEHFLAEYKAGRTPNPDILCNREIKFKVFLEYAEMLGAEKI 133 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R G + + +D +DQSYFL A + + FP+G+M+K VR Sbjct: 134 ATGHYVRQGWRDG-----HCRLLKGLDANKDQSYFLHAVPEVAIARTLFPVGEMEKSEVR 188 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A GL A K DS ICF+ + ++ D +K+ A G I G+++G H G++ Sbjct: 189 AIAERHGLTTARKKDSTGICFIGERRFSDFLKQYLP--AQPGVIETPEGEVIGEHMGLMY 246 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRV--IVG-PRESLEVHRIYLREINWLGD 313 YT+GQR+GLG+ P +V D + + + G L + + W+ Sbjct: 247 YTLGQRQGLGIGGLPNHPDAPWYVAAKDLERNVLIAVQGKHHPLLYTDSLSTEPVEWVAG 306 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDS 372 + K R Q V V+ +D GV F++ + V GQ+ V Y D Sbjct: 307 ----QPPAPEARLQAKTRYRQQDVACHVRVLEDGGVEARFDEPQRAVTPGQSLVLYDGDI 362 Query: 373 NEARVLGGGIISGSKR 388 LGGG+I + Sbjct: 363 ----CLGGGVIRSTWN 374 >gi|307244970|ref|ZP_07527067.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253923|ref|ZP_07535775.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258377|ref|ZP_07540118.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306854135|gb|EFM86343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863127|gb|EFM95069.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867561|gb|EFM99408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 389 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 125/391 (31%), Positives = 212/391 (54%), Gaps = 29/391 (7%) Query: 4 SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63 + +L + L +N K +V++ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 14 THFAKLTAEQLAENAK-KKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD- 71 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 C A D+ DA+ V D +++ + ++ + + V F + Y AG TP P + CN+ Sbjct: 72 --YCTAAADLADAQAVADKLDMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKE 129 Query: 124 VKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 +KF L LGAD +ATGHY+R GDD + + R +D +DQSYFL+ + Sbjct: 130 IKFKAFLEYAAEDLGADYIATGHYVRR---SGDDNNAQ--LLRGLDANKDQSYFLYTLSH 184 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 +Q+ FP+GD++K VR +A ++GL A K DS ICF+ + K+ D + R A Sbjct: 185 KQVGQSLFPVGDIEKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQP 242 Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES 297 G+I ++G+++GRH+G++ +T+GQR+GLG+ +P +VV D ++ ++V Sbjct: 243 GEIRTVDGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHD 302 Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFE 353 L + +++W+ + + +C VK R Q + +Q +DD + V F+ Sbjct: 303 NSALLSSGLIATQLHWVD----RQPIRENLRCTVKTRYRQTDIACEIQPIDDDTIRVIFD 358 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + ++ V GQ+ VFY + LGGG+I Sbjct: 359 EPQIAVTPGQSAVFYQGEV----CLGGGVIE 385 >gi|170699615|ref|ZP_02890654.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia ambifaria IOP40-10] gi|170135497|gb|EDT03786.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia ambifaria IOP40-10] Length = 384 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 127/391 (32%), Positives = 184/391 (47%), Gaps = 27/391 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V Sbjct: 3 KRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + ++ +++ V F Y+AG TP P V CN +KF L L A+ Sbjct: 60 ADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDAE 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K Sbjct: 120 MIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTK 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A ++GL A K DS ICF+ + + D + R G + +G+++G H G+ Sbjct: 175 VREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVIGEHIGL 232 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 YT GQR+G+G+ GEP FV D S+ + V L ++ ++W+ Sbjct: 233 AFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRQLVAGNVSWV 292 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTS 370 + DGF C K R Q R D + + F ++ V GQ+ V Y Sbjct: 293 AG----EPPADGFSCGAKTRYRQADAACSFGRGDGERFSLAFNDAQWAVTPGQSAVLYDG 348 Query: 371 DSNEARVLGGGIISGSKRSDAVEESLLSVIG 401 + LGGGII + + + + G Sbjct: 349 EI----CLGGGIIEFAATGQPGQTAPAAAAG 375 >gi|134302735|ref|YP_001122703.1| tRNA-specific 2-thiouridylase MnmA [Francisella tularensis subsp. tularensis WY96-3418] gi|166234854|sp|A4J081|MNMA_FRATW RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|134050512|gb|ABO47583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Francisella tularensis subsp. tularensis WY96-3418] Length = 359 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 129/374 (34%), Positives = 199/374 (53%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ Sbjct: 2 ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F Y AG TP P + CN+ +KF LS LG Sbjct: 59 VCDSIGIPFKKINFAAEYWDNVFEHFLIKYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY ++RL + + +D +DQ+YFL+ Q+QL FP+G+++K Sbjct: 119 DYIATGHYAQTRLAAD----GSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ + + + A +G+I NG +G H+G Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 232 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310 ++ YTIGQR+GLG+ + P F D ++ + + G L + E++W Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + A D F+C K+R Q V+ N DG V V F++ + + GQ+ VFY Sbjct: 293 VAGM----APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348 Query: 370 SDSNEARVLGGGII 383 D LGGG+I Sbjct: 349 DDV----CLGGGVI 358 >gi|297537830|ref|YP_003673599.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylotenera sp. 301] gi|297257177|gb|ADI29022.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylotenera sp. 301] Length = 369 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 127/384 (33%), Positives = 193/384 (50%), Gaps = 25/384 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++L+K+ K VVV +SGGVDSSV A LLK+ GY+V G+ ++ + + C + Q Sbjct: 1 MNLNKSSK-KHVVVGLSGGVDSSVTALLLKQQGYEVTGLFMKNWEDDDTDE---YCSSKQ 56 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DA V D I + ++ + +++ V F S Y AG TP P + CN +KF L Sbjct: 57 DLIDAVSVADKIGIDIEAVNFSKEYKDRVFDNFLSEYKAGRTPNPDILCNAEIKFKAFLD 116 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGADV+ATGHY + R G + + D +DQSYFL Q QL FP Sbjct: 117 HAMGLGADVIATGHYAQVRENPLKPG--LFQLMKADDGSKDQSYFLHRLNQAQLSKTLFP 174 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG M K VR++AR GL A+K DS ICF+ + + + + + G+I G+ Sbjct: 175 LGQMLKREVREIARGAGLINAEKKDSTGICFIGERPFQEFLSKYLPRE--PGEIKTPEGK 232 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRI 303 +G+H G++ YT+GQR+GL + GEP FV D ++ +IV L + Sbjct: 233 TVGKHEGLMYYTLGQRQGLKIGGSRESNGEPWFVAAKDMVANELIVVQGHQHPLLLNDGL 292 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASG 362 ++ W+ D + + + K R Q P + + D V + F + + + G Sbjct: 293 KASQLTWIDD----EEPITNWVYDAKTRYRQPDAPCEIDRLTKDEVEIKFGQKQWAITPG 348 Query: 363 QACVFYTSDSNEARVLGGGIISGS 386 Q+ V Y S+ LGGGII+ + Sbjct: 349 QSAVVYESNV----CLGGGIITTA 368 >gi|260426477|ref|ZP_05780456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Citreicella sp. SE45] gi|260420969|gb|EEX14220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Citreicella sp. SE45] Length = 380 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 195/382 (51%), Positives = 255/382 (66%), Gaps = 12/382 (3%) Query: 5 EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64 +A +LNSL L K P + RVVVAMSGGVDSSVVAA+L +GYDV+GVTLQLY+ A +K Sbjct: 4 DAPKLNSLGLPKPPSETRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAALAKK 63 Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 G+CCAG D++DARRV + + HYV DYE FR+AVI FA SY G TP+PC+ CN V Sbjct: 64 GACCAGIDIHDARRVAEQMGFPHYVLDYENIFRDAVIDEFAESYLGGATPVPCIRCNERV 123 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 KF DLL + L AD +ATGHYI+ + G R + D RDQSYFLF+TT +Q Sbjct: 124 KFKDLLETAKDLDADCMATGHYIQRMV-----GDRGPELHSAADANRDQSYFLFSTTPEQ 178 Query: 185 LCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243 L LRFPLG +K K R LA + GL +ADK DSQDICFV G Y V++++ G A G Sbjct: 179 LSFLRFPLGHLKSKAETRALAAKYGLSVADKPDSQDICFVPDGNYASVIEKLRPGAAEPG 238 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302 +IVH++G++LG H G+I+YTIGQRRGLG+ + +PL+VV LD + +VIVGP+E L Sbjct: 239 EIVHVDGRVLGEHRGVIHYTIGQRRGLGIGGLSDPLYVVKLDVDKKQVIVGPKELLATRT 298 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361 + +REINWLGD F + VK+RS++ P ++ ++ V+ +E GV+ Sbjct: 299 VPVREINWLGDEPFTSR--KEWHVSVKVRSTRPPREAVIRPISETEAEVELVVAEEGVSP 356 Query: 362 GQACVFYTSDSNEARVLGGGII 383 GQACVFY D+ +R+ GGG I Sbjct: 357 GQACVFY--DTESSRIFGGGWI 376 >gi|83859630|ref|ZP_00953150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oceanicaulis alexandrii HTCC2633] gi|83851989|gb|EAP89843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oceanicaulis alexandrii HTCC2633] Length = 433 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 205/375 (54%), Positives = 268/375 (71%), Gaps = 8/375 (2%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L+L P D RVV AMSGGVDSSVVAA+L R GY V+G+TLQLY+ +A RKG+CCAGQ Sbjct: 66 LNLGGEPSDHRVVAAMSGGVDSSVVAAVLHRAGYQVVGMTLQLYDHGEAVHRKGACCAGQ 125 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D++DARRV + + +HYV DYE RFR AVI FA +Y AG TP+PCV CN++VKF+DLL+ Sbjct: 126 DIHDARRVAEAMGFAHYVLDYETRFREAVIEDFADTYLAGFTPIPCVRCNQSVKFADLLA 185 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 ++QLGAD L TGHYI+ + R + R D +DQSYFLFATT++QL LRFP Sbjct: 186 TSKQLGADCLVTGHYIQRTMS-----GNRPELRRAADAGKDQSYFLFATTEEQLDYLRFP 240 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG + KE R+LA +GL +A K DSQDICFV G Y VV+++ G + G+IVHL+G+ Sbjct: 241 LGHLNKEQTRELAAALGLIVAAKPDSQDICFVPDGDYAAVVEKVRPGASRPGEIVHLDGR 300 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 ++G H G++ YT+GQRRGLG+A GEPL+VV LD +++VIVGPRE+L+V RI L ++NW+ Sbjct: 301 VMGEHEGVLRYTVGQRRGLGIATGEPLYVVRLDAENAQVIVGPREALQVRRITLTDVNWI 360 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 GDG +A DG +K+RS++ P P ++ DGV+V E E GVA GQACVFY+ Sbjct: 361 GDGDLSEA--DGLTVGIKVRSTRPPKPAILEVTGDGVFVLLETGEEGVAPGQACVFYSH- 417 Query: 372 SNEARVLGGGIISGS 386 + RVLGGG I + Sbjct: 418 PDHDRVLGGGWIRAT 432 >gi|295675544|ref|YP_003604068.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia sp. CCGE1002] gi|295435387|gb|ADG14557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia sp. CCGE1002] Length = 420 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 129/395 (32%), Positives = 181/395 (45%), Gaps = 29/395 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 +VVV MSGGVDSSV A LLK GYDV+G+ ++ + S+ C QD D Sbjct: 2 SKRKVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R R DG R + + +D +DQSYFL Q QL FPLG++ K Sbjct: 119 ETIATGHYARVRQNHERDG--RFELLKALDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKT 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A ++GL A K DS ICF+ + + D + R G + +G+I+G H G Sbjct: 177 KVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TRPGPMKTTDGKIVGEHIG 234 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT GQR+G+G+ GEP F D ++ + V L H + +W Sbjct: 235 LAFYTFGQRKGIGLGGSKDGSGEPWFAAGKDIPTNTLYVAQGHDHPWLLCHTLSAGNTSW 294 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG------VYVDFEKSEVGVASGQA 364 + + DGF C K R Q G + F+ ++ V GQ+ Sbjct: 295 VAG----EPPADGFACGAKTRYRQADAACTFNAAAAGGSGDGLFELTFDAAQWAVTPGQS 350 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSV 399 V Y D LGGGII + E Sbjct: 351 AVLYDGDV----CLGGGIIERAMTGQPAELPPDQA 381 >gi|282890136|ref|ZP_06298667.1| hypothetical protein pah_c013o042 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499987|gb|EFB42275.1| hypothetical protein pah_c013o042 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 375 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 126/391 (32%), Positives = 202/391 (51%), Gaps = 23/391 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 VVV MSGGVDSSV A LLK GY+VIG+ ++ ++ + G C A +D D R Sbjct: 3 SQKTVVVGMSGGVDSSVSALLLKEQGYNVIGMFMKNWDE---TDENGVCPATRDFEDVVR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD I++ +Y ++ + + + V F G TP P + CNR +KF +L QLGA Sbjct: 60 VCDQISIPYYSVNFVKEYWDNVFSHFIEELKQGHTPNPDILCNREIKFKVMLDKALQLGA 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY R+ L + + + +D +DQSYFL+A +Q+ L FP+G+++K Sbjct: 120 DFLATGHYCRNYL-----AESHTQLLKGLDPGKDQSYFLYAISQRALHRALFPIGNLQKS 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++AR+ GL ++K DS ICF+ + + + + + +G+ ++ G ++G+H+G Sbjct: 175 EVREIARKHGLSTSEKKDSTGICFIGKRDFKQFLGQYLSF--QKGNFENVKGDVVGQHDG 232 Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGDG 314 + YTIGQR+GLG+ G+ FVV D + V++ +L + +++W Sbjct: 233 VAYYTIGQRKGLGIGGQGDAWFVVGKDVERNVVVIDQGTHHPALYASTLTATDLHWHSPE 292 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 L F C KIR Q +++ ++ V V F + + Q+ VFY Sbjct: 293 L----PKTPFTCRAKIRYRQTDQDCVIEKMSEGRVEVRFPIPQRAITPRQSIVFYD---- 344 Query: 374 EARVLGGGIISGSKRSDAVEESLLSVIGDEF 404 E LGG II + + + + + F Sbjct: 345 EHVCLGGAIIERAGPTLHELGLSVPIQSESF 375 >gi|237746906|ref|ZP_04577386.1| tRNA-specific 2-thiouridylase mnmA [Oxalobacter formigenes HOxBLS] gi|229378257|gb|EEO28348.1| tRNA-specific 2-thiouridylase mnmA [Oxalobacter formigenes HOxBLS] Length = 369 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 126/380 (33%), Positives = 182/380 (47%), Gaps = 33/380 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+ MSGGVDSSV A LLK GY+VIG+ ++ + S+ C A QD DA V Sbjct: 4 KKVVIGMSGGVDSSVSAWLLKEQGYEVIGLFMKNWEDDDDSEF---CSARQDWLDAVTVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + V ++ ++ V F Y AG TP P V CN +KF L LGA+ Sbjct: 61 DVIGIDIEVVNFAAEYKERVFSEFLKEYEAGRTPNPDVLCNAEIKFKAFLDHAISLGAER 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R + + + +D +DQSYFL QQQL FPLG+++K V Sbjct: 121 IATGHYARVR-----ENNGFFELLKAVDDTKDQSYFLHRLNQQQLSKTIFPLGEIRKTEV 175 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + + + R + G I G +G+H G+ Sbjct: 176 RQIAEKIGLPNAKKKDSTGICFIGERPFRAFLNRYLSYE--PGPIKTPEGDEIGQHVGLS 233 Query: 261 NYTIGQRRGLGVAM----------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 YTIGQR+G+G+ + +V D +++ + V L + + Sbjct: 234 FYTIGQRKGIGIGGLKSFRRPDGTSDAWYVARKDTHNNTLYVVQGHDHPWLLSPSLEAGQ 293 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366 +W+ ED + VK R Q VP + + + FEK + + GQ+ V Sbjct: 294 SSWIAGISPEDG-----ELSVKTRYRQKDVPCVLNVTGNSELTASFEKPQWAITPGQSAV 348 Query: 367 FYTSDSNEARVLGGGIISGS 386 FY + LGGGII S Sbjct: 349 FYKGNV----CLGGGIIDNS 364 >gi|310828741|ref|YP_003961098.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium limosum KIST612] gi|308740475|gb|ADO38135.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium limosum KIST612] Length = 359 Score = 467 bits (1203), Expect = e-129, Method: Composition-based stats. Identities = 133/376 (35%), Positives = 194/376 (51%), Gaps = 26/376 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++VV MSGGVDSSV A LLK+ GYDVIGV ++ + + G C A +D D +RVC Sbjct: 1 MKIVVGMSGGVDSSVAALLLKQQGYDVIGVFMKNWEEKDED---GVCTATEDYEDVQRVC 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GAD 139 +TI++ +Y ++ + + V F Y G TP P V CN+ +KF L + G D Sbjct: 58 ETIDIPYYTVNFTREYYDHVFAYFLDEYKKGRTPNPDVLCNKEIKFKRFLDYALGVVGGD 117 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 VLATGHY + ++ G + + R D +DQ+YFL Q QL ++ FP+G + K+ Sbjct: 118 VLATGHYAQKDVHEG-----KFRLIRAFDHNKDQTYFLCQLGQHQLENVMFPIGHLDKKE 172 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A + L ADK DS ICF+ + + + + A G+I L+G I G+H G+ Sbjct: 173 VREIAEKNNLITADKKDSTGICFIGERNFTKFLSQYLP--AQPGEIRDLDGNIKGKHEGL 230 Query: 260 INYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 + YT+GQRR G GEP FVV D + + V +L + + +W+ Sbjct: 231 MYYTLGQRRGLGIGGQGTGEPWFVVEKDLKDNVLYVVQGEKHPALYSRSLEATDTSWVAG 290 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 +A F C K R Q V V R+D G++VDF+K + V GQ V Y Sbjct: 291 ----EAPAREFSCTAKFRYRQPDQGVHVTVRDDGGLHVDFDKDQKAVTPGQEVVLYDGQV 346 Query: 373 NEARVLGGGIISGSKR 388 LGG I ++ Sbjct: 347 ----CLGGATIDSIEK 358 >gi|299769236|ref|YP_003731262.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter sp. DR1] gi|298699324|gb|ADI89889.1| tRNA-specific 2-thiouridylase MnmA [Acinetobacter sp. DR1] Length = 377 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 121/379 (31%), Positives = 198/379 (52%), Gaps = 23/379 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ V Sbjct: 2 QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAV 58 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + + ++ + + V F + YAAG TP P + CN+ +KF L LGAD Sbjct: 59 ADKIGIKLHTANFAMEYWDRVFELFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMTLGAD 118 Query: 140 VLATGHYIRS-RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R G+ + R +D +DQ+YFL A +++ FP+G+++K Sbjct: 119 FIATGHYARRGETAYNSKGEAYAPLLRGVDNNKDQTYFLHAVHGKEINKTLFPVGEIEKP 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E+ L A K DS ICF+ + ++ D +K+ A G IV G+ +G H+G Sbjct: 179 EVRRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDTGKEVGEHHG 236 Query: 259 IINYT-----IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 ++ YT GL A FV++ D ++R+++G ++ +++ I+W Sbjct: 237 LMYYTLGQRGGIGLGGLKGAAEGAWFVLHKDIANNRLVIGQGHEHPLMQSTQLWSESIDW 296 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD---GVYVDFEKSEVGVASGQACVF 367 + ++ V+G +C K R Q V +++ GV V+F++ + V GQ+ VF Sbjct: 297 VAGE--QNIPVEGLRCTAKTRYRQPDQACTVFIDENSEHGVRVEFDEPQRAVTPGQSVVF 354 Query: 368 YTSDSNEARVLGGGIISGS 386 Y+ + LGGG+I + Sbjct: 355 YSDEV----CLGGGVIHHT 369 >gi|254372089|ref|ZP_04987582.1| hypothetical protein FTCG_01230 [Francisella tularensis subsp. novicida GA99-3549] gi|151569820|gb|EDN35474.1| hypothetical protein FTCG_01230 [Francisella novicida GA99-3549] Length = 359 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 130/374 (34%), Positives = 203/374 (54%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ Sbjct: 2 ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F Y AG TP P + CN+ +KF LS LG Sbjct: 59 VCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R+R+ +DG + + + +D +DQ+YFL+ Q+QL FP+G+++K Sbjct: 119 NYIATGHYARTRVL--EDGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ + + + A +G+I NG +G H+G Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKFLP--AQKGEIHDENGIKIGMHDG 232 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310 ++ YTIGQR+GLG+ + P F D ++ + + G L + E++W Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + A D F+C K+R Q V+ N DG V V F++ + + GQ+ VFY Sbjct: 293 VAGM----APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348 Query: 370 SDSNEARVLGGGII 383 D LGGG+I Sbjct: 349 DDV----CLGGGVI 358 >gi|291526521|emb|CBK92108.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium rectale DSM 17629] Length = 362 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 141/369 (38%), Positives = 202/369 (54%), Gaps = 15/369 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDAR 77 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ K+ +G CC V DAR Sbjct: 2 KKKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDVFKQSQEGGCCGLSAVEDAR 61 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV +++ +YV +++ F+ VI F S Y TP PC+ CNR VK+ LL + ++G Sbjct: 62 RVAAVLDIPYYVMNFKADFKKYVIDYFVSEYERAYTPNPCIACNRYVKWESLLHRSLEIG 121 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY R R + + E+DQ+Y L+ TQ+QL P+G+ +K Sbjct: 122 ADYIATGHYARIAQLP----NGRYTIANSVTAEKDQTYALYNLTQEQLRRTLMPVGEYEK 177 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 +R +A E GL +A KSDSQDICFV Y ++ G+ V +G ILGRH Sbjct: 178 PQIRRIAEEAGLPVAHKSDSQDICFVPDHDYASFIENETGKTYEPGNFVDESGNILGRHK 237 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 G+I+YTIGQR+GLG+ PLFV L ++ V++ ESL Y+ +IN++ + Sbjct: 238 GLIHYTIGQRKGLGITAATPLFVKELRPATNEVVISTNESLFSDTCYISDINYMA----Q 293 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + G + K+R S + ++G + F++ + + GQA VFY Sbjct: 294 EHITPGTRSIGKVRYSHRGADCTLTPMENGMIKCVFDEPQRAMTPGQAAVFYQD----GH 349 Query: 377 VLGGGIISG 385 VL GG I Sbjct: 350 VLCGGTIEK 358 >gi|53728867|ref|ZP_00134691.2| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Actinobacillus pleuropneumoniae serovar 1 str. 4074] Length = 389 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 125/391 (31%), Positives = 210/391 (53%), Gaps = 29/391 (7%) Query: 4 SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63 + +L + L +N K +V++ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 14 THFAKLTAEQLAENAK-KKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD- 71 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 C A D+ DA+ V D + + + ++ + + V F + Y AG TP P + CN+ Sbjct: 72 --YCTAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKE 129 Query: 124 VKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 +KF L LGAD +ATGHY+R GDD + + R +D +DQSYFL+ + Sbjct: 130 IKFKAFLEYAAEDLGADYIATGHYVRR---SGDDNNAQ--LLRGLDANKDQSYFLYTLSH 184 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 +Q+ FP+GD++K VR +A ++GL A K DS ICF+ + K+ D + R A Sbjct: 185 KQVGQSLFPVGDIEKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQP 242 Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES 297 G+I + G+++GRH+G++ +T+GQR+GLG+ +P +VV D ++ ++V Sbjct: 243 GEIRTVGGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHD 302 Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFE 353 L + +++W+ + + +C VK R Q + +Q +DD + V F+ Sbjct: 303 NSALLSSGLIATQLHWVD----RQPIRENLRCTVKTRYRQTDIACEIQPIDDDTIRVIFD 358 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + ++ V GQ+ VFY + LGGG+I Sbjct: 359 EPQIAVTPGQSAVFYQGEV----CLGGGVIE 385 >gi|240948512|ref|ZP_04752885.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus minor NM305] gi|240297020|gb|EER47591.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus minor NM305] Length = 389 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 130/391 (33%), Positives = 211/391 (53%), Gaps = 29/391 (7%) Query: 4 SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63 S L +N K +V++ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 14 SHFPPLTEEQRAENAK-KKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD- 71 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 C A D+ DA+ V D + + + ++ + + V F S Y AG TP P + CN+ Sbjct: 72 --YCTAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLSEYKAGRTPNPDILCNKE 129 Query: 124 VKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 +KF L LGAD +ATGHY+R GDD + + R +D +DQSYFL+A ++ Sbjct: 130 IKFKAFLEYAAEDLGADYIATGHYVRR---SGDDENAQ--LLRGLDTNKDQSYFLYALSK 184 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R A Sbjct: 185 KQVGQSLFPVGEIEKPIVRKIAEDLGLATAKKKDSTGICFIGERKFKDFLARFLP--AQP 242 Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES 297 G+I ++G+++GRH+G++ +T+GQR+GLG+ EP +VV D ++ ++V Sbjct: 243 GEIRTVDGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEEPFYVVEKDLINNVLVVAQGHD 302 Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFE 353 L + ++NW+ + + +C VK R Q+ +P +Q DD + V F+ Sbjct: 303 NSALLSTGLIASQLNWVDL----QPIRENLRCTVKTRYRQEDIPCEIQPIDDNTIRVMFD 358 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + ++ V GQ+ VFY + LGGGII Sbjct: 359 EPQIAVTPGQSAVFYLDEV----CLGGGIIE 385 >gi|254368479|ref|ZP_04984496.1| hypothetical protein FTAG_01322 [Francisella tularensis subsp. holarctica FSC022] gi|157121373|gb|EDO65574.1| hypothetical protein FTAG_01322 [Francisella tularensis subsp. holarctica FSC022] Length = 359 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 128/374 (34%), Positives = 198/374 (52%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ Sbjct: 2 ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F Y AG TP P + CN+ +KF LS LG Sbjct: 59 VCDSIGIPFKKINFTAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + RL + + +D +DQ+YFL+ Q+QL FP+G+++K Sbjct: 119 DYIATGHYAQIRLAAD----GSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ + + + A +G+I NG +G H+G Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 232 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310 ++ YTIGQR+GLG+ + P F D ++ + + G L + +++W Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIKLSW 292 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + A D F+C K+R Q V+ N DG V V F++ + + GQ+ VFY Sbjct: 293 VAGM----APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348 Query: 370 SDSNEARVLGGGII 383 D LGGG+I Sbjct: 349 DDV----CLGGGVI 358 >gi|239626056|ref|ZP_04669087.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridiales bacterium 1_7_47_FAA] gi|239520286|gb|EEQ60152.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridiales bacterium 1_7_47FAA] Length = 358 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 135/366 (36%), Positives = 199/366 (54%), Gaps = 14/366 (3%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARR 78 +VVV MSGGVDSSV A LLK+ GYDVIGVT+Q++ + +G CC V DARR Sbjct: 3 KKVVVGMSGGVDSSVAAWLLKQQGYDVIGVTMQIWQDEDTDVQEAEGGCCGLSAVDDARR 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + +YV +++E FR V+ F Y AG TP PC+ CNR VK+ LL + +GA Sbjct: 63 VAMDLGIPYYVMNFKEEFRTNVMDYFVGEYVAGRTPNPCIACNRYVKWESLLRRSMAIGA 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + R + + ++DQ+Y L+ TQ+QL P+G K+ Sbjct: 123 DYIATGHYAQICQLPS----GRYALKTSVTAQKDQTYALYNLTQEQLARTLMPVGSYHKD 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R +A ++GL +A K DSQ+ICF+ + ++ EG+ V L G +LG+H G Sbjct: 179 EIRRMAEDIGLQVAHKPDSQEICFIPDHDHARFIEAYTGMQVPEGNFVDLEGNVLGKHKG 238 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I +YTIGQR+GL ++MG P+FVV + ++ V++G + + + + ++NW+ Sbjct: 239 ISHYTIGQRKGLNLSMGHPVFVVEIRPETNEVVIGEGKDVFTNVLCCDKLNWMAIDGLHG 298 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + KIR S P ++ G V F + GQA VFY D V Sbjct: 299 ---ESMEVTAKIRYSHKGSPCTIREIGRGLVECRFHEPVRAATPGQAVVFYDGD----YV 351 Query: 378 LGGGII 383 GGG I Sbjct: 352 AGGGTI 357 >gi|303251982|ref|ZP_07338153.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247144|ref|ZP_07529196.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649412|gb|EFL79597.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856393|gb|EFM88544.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 389 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 125/391 (31%), Positives = 210/391 (53%), Gaps = 29/391 (7%) Query: 4 SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63 + +L + L +N K +V++ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 14 THFAKLTAEQLAENAK-KKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD- 71 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 C A D+ DA+ V D + + + ++ + + V F + Y AG TP P + CN+ Sbjct: 72 --YCTAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKE 129 Query: 124 VKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 +KF L LGAD +ATGHY+R GDD + + R +D +DQSYFL+ + Sbjct: 130 IKFKAFLEYAAEDLGADYIATGHYVRR---SGDDNNVQ--LLRGLDANKDQSYFLYTLSH 184 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 +Q+ FP+GD++K VR +A ++GL A K DS ICF+ + K+ D + R A Sbjct: 185 KQVGQSLFPVGDIEKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQP 242 Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES 297 G+I + G+++GRH+G++ +T+GQR+GLG+ +P +VV D ++ ++V Sbjct: 243 GEIRTVGGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHD 302 Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFE 353 L + +++W+ + + +C VK R Q + +Q +DD + V F+ Sbjct: 303 NSALLSSGLIATQLHWVD----RQPIRENLRCTVKTRYRQTDIACEIQPIDDDTIRVIFD 358 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + ++ V GQ+ VFY + LGGG+I Sbjct: 359 EPQIAVTPGQSAVFYQGEV----CLGGGVIE 385 >gi|149203838|ref|ZP_01880807.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseovarius sp. TM1035] gi|149142955|gb|EDM30997.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseovarius sp. TM1035] Length = 383 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 197/386 (51%), Positives = 254/386 (65%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + LNSL K+P + RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A Sbjct: 1 MALDINKPLNSLGFPKSPAETRVVVAMSGGVDSSVVAAHLAAEGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + + HYV DYE FR+AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGVDIHDARRVAEEMGFPHYVLDYENIFRDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL R L AD +ATGHYI+ ++ G + + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETARDLEADCMATGHYIQRKM-----GVQGPELHSATDSARDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K++ R+LA + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 TPEQLEFLRFPLGHLPSKQATRELAAQYGLQVADKPDSQDICFVPNGNYASVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IVH +G+ILG H G+I+YTIGQRRGLG+ + EPL+VV LD ++ RVIVGP++ L Sbjct: 236 AEPGEIVHADGRILGTHEGVIHYTIGQRRGLGIGGLEEPLYVVRLDVDTRRVIVGPKDML 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + LREINWLGD + VK+RS++ P ++ + V+ E Sbjct: 296 STRTVPLREINWLGDAPLTSQA--EWHISVKVRSTRPPREAVLRPISATEATVELLTPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 GV+ GQACVFY ++ RVLGGG I Sbjct: 354 GVSPGQACVFY--ETTGTRVLGGGWI 377 >gi|312143962|ref|YP_003995408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Halanaerobium sp. 'sapolanicus'] gi|311904613|gb|ADQ15054.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Halanaerobium sp. 'sapolanicus'] Length = 357 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 143/368 (38%), Positives = 216/368 (58%), Gaps = 15/368 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRV 79 +V++AMSGGVDSSV AALLK GY+VIG T+ ++ + +A+ R+ CC+ + DA+RV Sbjct: 2 KKVMIAMSGGVDSSVAAALLKEKGYEVIGGTMHIFPDYEEATDREDHCCSYSAIRDAKRV 61 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + H+VF+ ++ F+ VI F Y+ TP PCV CN+ +KF LL R++G D Sbjct: 62 AQKLEIPHFVFNLKDEFQEKVIDYFVYEYSKARTPNPCVMCNKKIKFDALLRKAREIGCD 121 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + + R ++ + D +DQSY L+ Q+QL FPLGD K+ Sbjct: 122 YIATGHYSKI-----EKNNGRYLLKKGRDESKDQSYMLYVLNQEQLSRALFPLGDFTKQE 176 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R A+E+G +I +K++SQ+ICFV Y + I+ G I+ G +G HNGI Sbjct: 177 IRQKAKELGFEIHNKAESQEICFVPDDDYVRFLDNNYPEISKPGPILDSEGNKVGTHNGI 236 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 NYTIGQRRGLGVA+G P +VV LD +++ VI+G E + ++ +IN + + Sbjct: 237 SNYTIGQRRGLGVALGYPAYVVKLDPDNNAVILGEDEEVFSKGLFAEDINIIPFSSLDGK 296 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + +IR + PVP +++ +D + V+F+ S+ V GQ+ VFY D V Sbjct: 297 I----EVAAQIRYNSYPVPAIIEKIGEDKIKVEFKDSQRAVTPGQSVVFYLDD----LVF 348 Query: 379 GGGIISGS 386 GGGII S Sbjct: 349 GGGIIKES 356 >gi|110679829|ref|YP_682836.1| tRNA-specific 2-thiouridylase MnmA [Roseobacter denitrificans OCh 114] gi|123065538|sp|Q166E3|MNMA_ROSDO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|109455945|gb|ABG32150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseobacter denitrificans OCh 114] Length = 380 Score = 467 bits (1202), Expect = e-129, Method: Composition-based stats. Identities = 189/386 (48%), Positives = 251/386 (65%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + + LNSL K P + RVVVAMSGGVDSSVVAA+L +GYDV+GVTLQLY+ A Sbjct: 1 MPLDPSPTLNSLGFAKPPAETRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + + HYV DYE F++AVI FA SY G TP+PC+ C Sbjct: 61 LAKKGACCAGLDIHDARRVSEKMGFPHYVLDYENIFKDAVIDEFAESYLGGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL + L AD +ATGHYI+ + G + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETAKDLDADCMATGHYIQRKS-----GPYGAELHSAADANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + KE R LA + GL +A+K DSQDICFV G Y V++++ Sbjct: 176 TPEQLAFLRFPLGHLPSKEDTRALAEKYGLSVANKPDSQDICFVPDGDYASVIRKLRPEA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A GDIV +G++L RH+G++NYTIGQRRGLG+ + PL+V+ LD + +V+VGP+ L Sbjct: 236 AAPGDIVDTDGRVLARHDGVVNYTIGQRRGLGIGGLATPLYVIKLDAEARQVVVGPKSML 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + +REINWLGD F+ D + VK+RS++ P ++ +D V+ E Sbjct: 296 STRTVPVREINWLGDEPFQSR--DAWHLAVKVRSTRPPTDAIIRPISDTEATVELTSPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 G++ GQACVFY +DS +R+ GGG I Sbjct: 354 GISPGQACVFYDTDS--SRIYGGGWI 377 >gi|163736308|ref|ZP_02143727.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Phaeobacter gallaeciensis BS107] gi|161390178|gb|EDQ14528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Phaeobacter gallaeciensis BS107] Length = 381 Score = 466 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 193/386 (50%), Positives = 254/386 (65%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M +LNSL K P + RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A Sbjct: 1 MAQDAHPQLNSLGFAKPPAETRVVVAMSGGVDSSVVAAHLADEGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + HYV DYE F++AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL R L AD +ATGHYI+ + DG + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETARDLEADCMATGHYIQRK-----DGPNGPELHSAEDANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K++ R++A + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 TPEQLDYLRFPLGHLPSKDATREMASQYGLAVADKPDSQDICFVPNGDYASVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IVH +G++LG H+G+I+YTIGQRRGLG+ + EPL+VV LD ++ +V+VGP+E L Sbjct: 236 AEPGEIVHSDGRVLGTHDGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDTKQVVVGPKELL 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 I +REINWLGD F D + VK+RS++ P ++ ++ V+ E Sbjct: 296 ATRTIPVREINWLGDEPFTSR--DEWHLKVKVRSTRPPRDAIIRPISETEAEVELLTPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 G++ GQACVFY + +R+ GGG I Sbjct: 354 GISPGQACVFYAEE--GSRIFGGGWI 377 >gi|54294275|ref|YP_126690.1| hypothetical protein lpl1340 [Legionella pneumophila str. Lens] gi|81601380|sp|Q5WWV9|MNMA_LEGPL RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|53754107|emb|CAH15580.1| hypothetical protein lpl1340 [Legionella pneumophila str. Lens] Length = 361 Score = 466 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 121/376 (32%), Positives = 185/376 (49%), Gaps = 27/376 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK GY V G+ ++ + + C A +D+ DA+ VC+ Sbjct: 4 KVIVGMSGGVDSSVAAWLLKEQGYQVEGLFMKNWEQDDHND---YCPAAKDLADAQAVCN 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + ++ + + + V F S Y G TP P V CN+ +KF+ L+ LGAD + Sbjct: 61 QLRIPLHTVNFSKEYWDRVFAYFLSEYEKGRTPNPDVLCNKEIKFNAFLNYALTLGADYI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY ++ + + + D E+DQ+YFL A + L FP+GD K +R Sbjct: 121 ATGHYAKNTIE-----GSIGYLFKAKDREKDQTYFLHAVEPEALSKTIFPIGDFTKPQIR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 + A+++GL K DS ICF+ + ++ + +A GDI G+ LG+H+G++ Sbjct: 176 EFAKQLGLVTHAKKDSTGICFIGEKRFKTFLNEFI--LAKPGDIKSTGGKTLGQHDGLMF 233 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313 YT+GQR+GLG+ EP +VV D S+ + V L + I+WL D Sbjct: 234 YTLGQRQGLGIGGLQNSTDEPWYVVDKDIASNTLYVAQGSQHPMLYSQGLICGPIHWLAD 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 + CF K R Q + D+ YV F + + GQ VFY + Sbjct: 294 YENHLPLT----CFAKTRYRQTDQACMISPPDNNQHYVMFSNPQRAITPGQFIVFYEKN- 348 Query: 373 NEARVLGGGIISGSKR 388 + LGG I R Sbjct: 349 ---QCLGGATIEQIIR 361 >gi|300023996|ref|YP_003756607.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Hyphomicrobium denitrificans ATCC 51888] gi|299525817|gb|ADJ24286.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Hyphomicrobium denitrificans ATCC 51888] Length = 397 Score = 466 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 194/374 (51%), Positives = 254/374 (67%), Gaps = 6/374 (1%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 RVVVAMSGGVDSSV AA++K G+DVIGVTLQLY+ A+ RKGSCCAGQD++DA Sbjct: 11 PSAKKRVVVAMSGGVDSSVAAAIMKAAGHDVIGVTLQLYDHGSATGRKGSCCAGQDIHDA 70 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV D + + HYV DYE RF VI FA SY GETP+PCV CN +KF DLL + L Sbjct: 71 RRVADALGIPHYVLDYEARFAQKVIESFAESYVHGETPIPCVTCNNEIKFRDLLETAKDL 130 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GA+VL TGHY++ R D + + R +D +RDQSYFLF T+ QL L FP+G ++ Sbjct: 131 GAEVLVTGHYVQRR-----DTEHGPELARAVDTDRDQSYFLFGITKAQLAALWFPVGALE 185 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VRDLAR L +ADKSDSQDICFV G+Y DV++R+ G+IVHL+G++LGRH Sbjct: 186 KSEVRDLARSFNLPVADKSDSQDICFVPTGRYTDVIERLKPNALDAGNIVHLDGRVLGRH 245 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GI++YT+GQRRG+ + EPL+VV LD + V+VGPR +L + LR++NWLG+ F Sbjct: 246 EGIVHYTVGQRRGIKIPAAEPLYVVRLDAAKNEVVVGPRSALTTTGLILRDVNWLGENSF 305 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEA 375 ++ +G + FV++RSSQ V + + G V+ E G+A+GQACVFY S A Sbjct: 306 AESARNGLELFVRMRSSQKLRAALVTADGETGGKVELHDGEEGIATGQACVFYASQEPGA 365 Query: 376 RVLGGGIISGSKRS 389 RVLGGG I+ + ++ Sbjct: 366 RVLGGGWIAKTVKA 379 >gi|309388972|gb|ADO76852.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Halanaerobium praevalens DSM 2228] Length = 360 Score = 466 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 141/371 (38%), Positives = 219/371 (59%), Gaps = 15/371 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRV 79 +V++AMSGGVDSSV AALLK +GY+VIG T+ ++ + +A+ R+ CC+ V DA+RV Sbjct: 2 KKVMIAMSGGVDSSVAAALLKEEGYEVIGGTMHIFPDYEEATDREDHCCSYSAVRDAKRV 61 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + H+VF+ E F+ VI F Y+ G TP PCV CN+ +KF+ L ++G D Sbjct: 62 AQKLEIPHFVFNLREEFQEKVIDYFVDEYSLGRTPNPCVMCNKEIKFAALHKKAIEIGCD 121 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +A+GHY + + R I+ + +D +DQSY L+ Q+QL FPL + K Sbjct: 122 YIASGHYAKI-----EKENGRYILKKGLDENKDQSYMLYVLNQEQLSQTLFPLSEYTKSE 176 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R+ A+ +G +I +K++SQ+ICFV Y + I+ G I+ G +G H G+ Sbjct: 177 IREKAKNLGFEIHNKAESQEICFVPDDDYVRFLDNNYPEISNTGPILDSEGNKVGEHEGL 236 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQRRGLG++MG P++V LD + VIVG +S+ + E+N++ FED Sbjct: 237 AHYTIGQRRGLGISMGYPIYVTNLDYEKNAVIVGKDKSVFSDGLIAEELNFI---PFED- 292 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + +IR + PV ++++ +D V V+FE+++ V GQ+ VFY D VL Sbjct: 293 IDGRMEVEAQIRYNSFPVKAYIEKIKNDEVKVEFEEAQRAVTPGQSVVFYLGD----LVL 348 Query: 379 GGGIISGSKRS 389 GGGII S ++ Sbjct: 349 GGGIIKKSFKN 359 >gi|328676178|gb|AEB27048.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Francisella cf. novicida Fx1] Length = 359 Score = 466 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 130/374 (34%), Positives = 202/374 (54%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ Sbjct: 2 ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F Y AG TP P + CN+ +KF LS LG Sbjct: 59 VCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R+R+ +DG + + + +D +DQ+YFL+ Q+QL FP+G+++K Sbjct: 119 DYIATGHYARTRVL--EDGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ + + + A +G+I NG +G H+G Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKFLP--AQKGEIHDENGIKIGMHDG 232 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310 ++ YTIGQR+GLG+ + P F D ++ + + G L + E++W Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + A D F+C K+R Q V+ N D V V F++ + + GQ+ VFY Sbjct: 293 VAGM----APADKFRCAAKVRYRQKDQSCEVEVNQDASVNVTFDQPQRAITPGQSVVFYI 348 Query: 370 SDSNEARVLGGGII 383 D LGGG+I Sbjct: 349 DDV----CLGGGVI 358 >gi|319940913|ref|ZP_08015251.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sutterella wadsworthensis 3_1_45B] gi|319805629|gb|EFW02417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sutterella wadsworthensis 3_1_45B] Length = 382 Score = 466 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 124/394 (31%), Positives = 188/394 (47%), Gaps = 30/394 (7%) Query: 9 LNSLDLDKNPKDM---RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65 LN+ L + M +VVV +SGGVDSSV A LLK GY+VIG+ ++ + S+ Sbjct: 5 LNARILSGTTEQMSKGKVVVGLSGGVDSSVSAWLLKEQGYEVIGLFMKNWEDDDDSE--- 61 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 C + QD DA V D + + ++ + +++ V F Y+AG TP P + CN +K Sbjct: 62 YCSSRQDFIDATSVADVVGIDIEAVNFAKEYKDRVFSNFLEEYSAGRTPNPDILCNSEIK 121 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F L ++GAD +ATGHY R + G DG + R +D +DQSYFL +Q+Q+ Sbjct: 122 FRAFLDHAMRMGADWIATGHYARVQRPEGVDGP--TELLRGIDPGKDQSYFLHRLSQEQI 179 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 + FP+G+M K VR +A E+ L A K DS ICF+ + + + + R G I Sbjct: 180 ARVLFPVGNMFKTDVRRIAEEISLPNAKKKDSTGICFIGERPFREFLNRYLP--TQPGPI 237 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RES 297 +G+++G H G+ YT+GQR+G+GV GEP FV D ++ + + Sbjct: 238 RTPDGKVVGEHVGLAFYTLGQRKGIGVGGQHDSTGEPWFVAKKDLKTNTLWICQGHDHPW 297 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF---EK 354 L H + +W+ E V+ R Q P + + + Sbjct: 298 LLSHELICVRPSWISGHAPEPNTP----VTVRTRYRQPDEPTRLAAVGAQAF-TLDCTDS 352 Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388 + GQ+ V Y D LGGG I +R Sbjct: 353 PQWAATPGQSAVLYQGDV----CLGGGFIDVVER 382 >gi|52424356|ref|YP_087493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mannheimia succiniciproducens MBEL55E] gi|52306408|gb|AAU36908.1| TrmU protein [Mannheimia succiniciproducens MBEL55E] Length = 400 Score = 466 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 131/392 (33%), Positives = 212/392 (54%), Gaps = 29/392 (7%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 +L++ L +N K +V+V MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 28 PKLSAEQLAENAK-KKVIVGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 83 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C A D+ DA+ V D + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 84 CTAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKF 143 Query: 127 SDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 L LGAD +ATGHY+R R GDD R + R +D +DQSYFL+ + +Q+ Sbjct: 144 KAFLEYAAEDLGADYIATGHYVRRR---GDDENAR--LLRGLDSNKDQSYFLYTLSHKQV 198 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+GD++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 199 GQSLFPVGDIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARFLP--AQPGEI 256 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRES--- 297 ++G+++GRH+G++ YT+GQR+GLG+ P +V D ++ +IV Sbjct: 257 RTVDGKVIGRHDGLMYYTLGQRKGLGIGGIKGMDENPFYVAEKDLVNNVLIVAQGHDNSA 316 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356 L + R+++W+ + + +C VK R Q +P +Q DD + V F++ + Sbjct: 317 LLSSGLIARQLHWVD----RQPIRENLRCTVKTRYRQTDIPCEIQPIDDETIRVIFDEPQ 372 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIISGSKR 388 + V GQ+ VFY + LGGG+I + Sbjct: 373 IAVTPGQSAVFYQGEV----CLGGGVIETQIK 400 >gi|304313061|ref|YP_003812659.1| Probable tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [gamma proteobacterium HdN1] gi|301798794|emb|CBL47027.1| Probable tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [gamma proteobacterium HdN1] Length = 387 Score = 466 bits (1201), Expect = e-129, Method: Composition-based stats. Identities = 116/396 (29%), Positives = 182/396 (45%), Gaps = 41/396 (10%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 +V+V MSGGVDSSV A LL ++GY+V G+ ++ + ++ C A D+ DA++ Sbjct: 3 HPKKVIVGMSGGVDSSVAAWLLLQEGYEVEGLFMKNWEEDDGTE---YCTALTDLADAQQ 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V DT+ + + ++ + + V F + Y G TP P + CN+ +KF L LGA Sbjct: 60 VADTLGIRLHTANFAAEYWDRVFEYFLAEYKGGRTPNPDILCNKEIKFRAFLDYALTLGA 119 Query: 139 DVLATGHYIRSRLYVGDDGKRR-RIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D +ATGHY +G +C+ +D +DQSYFL A + +QL FPLG M K Sbjct: 120 DAIATGHYATRGRNTQTEGGGEIAELCKGVDSNKDQSYFLHAVSGKQLAKTLFPLGKMLK 179 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR +A+E G K DS ICF+ + ++ D +++ A G IV +G ++G H Sbjct: 180 PEVRRIAKEQGFTNHAKKDSTGICFIGERRFRDFLQQYIP--AQPGQIVSESGAVVGEHQ 237 Query: 258 GIINYT-----IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G++ YT G+ A P +V++ D + +++++G L + I Sbjct: 238 GLMYYTIGQRQGIGIGGIKDADENPWYVLHKDLDKNQLLIGQGNDHPRLFSRTLNASRIE 297 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-------------------GVYV 350 W+ ++ C K R Q V G+ V Sbjct: 298 WVSGKPPSLPLI----CTAKTRYRQPDQSCTVSAMPHNPSLNAGHEPFAEAQGEPYGISV 353 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 F++ + V GQ VFY D LGGG I + Sbjct: 354 HFDEPQRAVTPGQYVVFYQGDV----CLGGGPIEST 385 >gi|254462137|ref|ZP_05075553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacterales bacterium HTCC2083] gi|206678726|gb|EDZ43213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacteraceae bacterium HTCC2083] Length = 381 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 198/386 (51%), Positives = 253/386 (65%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + AT+LNSL K P D RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A Sbjct: 1 MALDTATKLNSLGFAKAPSDTRVVVAMSGGVDSSVVAAQLASEGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + + HYV DYE F++AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGLDIHDARRVAEEMGFPHYVLDYENVFKDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL + L AD +ATGHYI+ ++ G + + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETAKDLDADCMATGHYIQRKM-----GPEKAELHAAADGARDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 Q+QL LRFPLG + K++ R+LA + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 KQEQLDFLRFPLGHLPSKDATRELAAKFGLSVADKPDSQDICFVPNGNYAAVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESL 298 A GDIV G +LG+H G+I+YTIGQRRGLG+ E PL+VV LD + VIVGP+E L Sbjct: 236 AEAGDIVDTEGNVLGKHEGVIHYTIGQRRGLGIGGLETPLYVVRLDVDLKHVIVGPKELL 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEV 357 I +REINWLGD + + V++RS++ P P ++ D V+ E Sbjct: 296 STRTIPVREINWLGDAPLSSK--EEWHVLVRVRSTRPPRPAIIRPISDVEATVELLTPED 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 GV+ GQACVFY +DS R+ GGG I Sbjct: 354 GVSPGQACVFYDTDS--TRIFGGGWI 377 >gi|303234693|ref|ZP_07321321.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Finegoldia magna BVS033A4] gi|302494176|gb|EFL53954.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Finegoldia magna BVS033A4] Length = 366 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 130/380 (34%), Positives = 206/380 (54%), Gaps = 24/380 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + ++VVV +SGGVDSSV A LLK+ GYDV+G+ ++ ++ G C A +D DA Sbjct: 2 DNSKIKVVVGISGGVDSSVAALLLKQQGYDVVGIFMKNWDETDDD---GVCTAEEDYKDA 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V + I + +Y ++E+ + + V F Y G TP P + CN+ +KF L +L Sbjct: 59 VAVANEIGIDYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAMKL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R + GDDG + + R +D +DQ+YFL TQ Q+ ++ FP+G+++ Sbjct: 119 GADYVATGHYAR--IERGDDGVK---LLRGLDNNKDQTYFLSQLTQDQIKNVMFPVGELQ 173 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ VR++A++ L ADK DS ICF+ + + + + A +G+IV ++G I+G+H Sbjct: 174 KKEVREIAKKYNLATADKKDSTGICFIGERNFNEFLSHYLP--AKQGNIVDVDGNIMGKH 231 Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312 NG++ +TIGQRRGLG+ G FV + ++ +IV E L +++Y + Sbjct: 232 NGLMYHTIGQRRGLGIGGDGAAWFVCGKNLATNELIVCQGEDNPLLYSNKLYASQF---- 287 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 + + F C K R Q + V+ DD V V+++ + V GQA VFY + Sbjct: 288 ETSLNHLDRNEFDCTAKFRYRQKDIRAHVKFIDDTHVEVNYDDT-KAVTPGQAAVFYDGE 346 Query: 372 SNEARVLGGGIISGSKRSDA 391 +G II D Sbjct: 347 V----CIGSAIIDEVYNGDK 362 >gi|257413240|ref|ZP_04742446.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseburia intestinalis L1-82] gi|257204162|gb|EEV02447.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseburia intestinalis L1-82] gi|291539633|emb|CBL12744.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseburia intestinalis XB6B4] Length = 363 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 135/374 (36%), Positives = 202/374 (54%), Gaps = 16/374 (4%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQ 71 ++K +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + G CC Sbjct: 1 MEKRMAAKKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDEFVQEESGGCCGLS 60 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 V DARRV D + + +YV ++++ F+ V+ F + Y G TP PC+ CNR VK+ LL+ Sbjct: 61 AVDDARRVADRLGIPYYVMNFKQEFKKNVMDYFTAEYLKGRTPNPCIACNRYVKWEALLN 120 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + +GAD +ATGHY R R + + +DQ+Y L+ TQ+QL P Sbjct: 121 RSLAIGADYIATGHYARIEQLS----NGRYAIKNSVTAVKDQTYALYNLTQEQLSHTLMP 176 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI-NAGIALEGDIVHLNG 250 +G K+ +R +A E+GL +A K DSQ+ICF+ Y + R + G+ V +G Sbjct: 177 VGAYHKDEIRKIAEEIGLMVAHKKDSQEICFISDNDYAGFIDRECGDQVPPPGNFVLTDG 236 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 ++G+H GI +YTIGQR+GLG+A G P+FV + ++ V++G + + + IN+ Sbjct: 237 TVVGKHKGITHYTIGQRKGLGIAFGHPVFVTEIRPETNEVVLGENRDVFTYELDADHINF 296 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYT 369 + +D ++ KIR S V R +D ++ +F + V GQA V Y Sbjct: 297 MSIPDIQDEML----LKAKIRYSHSGSMCKVTRTGEDTIHCEFLEPVRAVTPGQAVVLYD 352 Query: 370 SDSNEARVLGGGII 383 + V GGG I Sbjct: 353 GE----YVAGGGTI 362 >gi|225376291|ref|ZP_03753512.1| hypothetical protein ROSEINA2194_01929 [Roseburia inulinivorans DSM 16841] gi|225211937|gb|EEG94291.1| hypothetical protein ROSEINA2194_01929 [Roseburia inulinivorans DSM 16841] Length = 358 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 138/367 (37%), Positives = 201/367 (54%), Gaps = 16/367 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARR 78 +VVV MSGGVDSSV A LLK+ GYDVIGVT+Q++ ++ G CC V DARR Sbjct: 3 KKVVVGMSGGVDSSVAAYLLKKQGYDVIGVTMQIWQDEDEFTQEKNGGCCGLSAVNDARR 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + +YV ++++ F+ V+ F + Y G TP PC+ CNR VK+ LL + +GA Sbjct: 63 VADRLEIPYYVMNFKQEFKKNVMDYFTAEYLKGRTPNPCIACNRYVKWEALLDRSLAIGA 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R + + E+DQ+Y L+ TQ QL P+GD K+ Sbjct: 123 DYIATGHYARVEQLP----NGRYAIKNSVTAEKDQTYALYNLTQTQLSRTLMPVGDYHKD 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNGQILGRHN 257 +R +A E+GL +A K DS +ICF+ Y + K + G+ V +G+ILGRH Sbjct: 179 EIRQIAEEIGLMVAHKKDSMEICFIPDDDYAGFIDKECGKLVPPPGNFVSTDGKILGRHK 238 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI +YT+GQR+GLG+A+G P+FV + ++ V++G E + +Y +N++ Sbjct: 239 GITHYTVGQRKGLGIALGYPVFVTEIRPETNEVVLGSNEDVFTTELYADHVNFMSLPD-- 296 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + KIR S V R +D ++ FE+ V GQA V Y D Sbjct: 297 --IDGEMELKAKIRYSHSGSMCKVTRTGEDQIHCVFEEPVRAVTPGQAVVLYDGDYIA-- 352 Query: 377 VLGGGII 383 GGG+I Sbjct: 353 --GGGVI 357 >gi|255320585|ref|ZP_05361763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter radioresistens SK82] gi|262378583|ref|ZP_06071740.1| tRNA methyl transferase [Acinetobacter radioresistens SH164] gi|255302347|gb|EET81586.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acinetobacter radioresistens SK82] gi|262299868|gb|EEY87780.1| tRNA methyl transferase [Acinetobacter radioresistens SH164] Length = 377 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 125/379 (32%), Positives = 197/379 (51%), Gaps = 23/379 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ V Sbjct: 2 QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAV 58 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD I + + ++ + + V F + YAAG TP P + CN+ +KF L +LGAD Sbjct: 59 CDRIGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAVKLGAD 118 Query: 140 VLATGHYIRS-RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R G+ + R +D +DQ+YFL A +++ FP+G+++K Sbjct: 119 FIATGHYARRGETKYNSQGEAYAELLRGVDTNKDQTYFLHAVHGREINKTLFPVGEIEKP 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E+GL A K DS ICF+ + ++ D +K+ A G IV +G+ +G H+G Sbjct: 179 QVRKIAEELGLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDDGKEVGEHHG 236 Query: 259 IINYT-----IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 ++ YT GL A FV+Y D +R++VG ++ ++ I+W Sbjct: 237 LMYYTLGQRGGIGIGGLKGAAEGAWFVLYKDIAGNRLVVGQGHEHPLMQSTILWSEAIDW 296 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND---DGVYVDFEKSEVGVASGQACVF 367 + ++ G +C K R Q V ++D GV V+F+ + V GQ+ VF Sbjct: 297 VAGE--QEIPASGLRCTAKTRYRQADQDCTVYKDDSSTQGVRVEFDDPQRAVTPGQSVVF 354 Query: 368 YTSDSNEARVLGGGIISGS 386 Y+ + LGGG+I + Sbjct: 355 YSGEV----CLGGGVIHHT 369 >gi|160940314|ref|ZP_02087659.1| hypothetical protein CLOBOL_05203 [Clostridium bolteae ATCC BAA-613] gi|158436894|gb|EDP14661.1| hypothetical protein CLOBOL_05203 [Clostridium bolteae ATCC BAA-613] Length = 351 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 137/360 (38%), Positives = 195/360 (54%), Gaps = 14/360 (3%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRVCDTIN 84 MSGGVDSSV A LLK GYDVIGVT+Q++ + +G CC V DARRV + Sbjct: 1 MSGGVDSSVAAWLLKEQGYDVIGVTMQIWQDEDTEVQEAEGGCCGLSAVDDARRVAMDLG 60 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + +YV +++E FR V+ F Y G TP PC+ CNR VK+ LL + +GAD +ATG Sbjct: 61 IPYYVMNFKEEFRKNVMDYFVGEYVEGRTPNPCIACNRHVKWESLLRRSMAIGADYIATG 120 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY + G R + + +DQ+Y L+ TQ+QL P+G KE +RD+A Sbjct: 121 HYAQIDRLPG----GRYSLKTSVTAAKDQTYALYNLTQEQLSHTLMPVGSYHKEEIRDMA 176 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI 264 + +GL +A K DSQ+ICF+ Y ++ G+ V L+G++LGRH GI +YT+ Sbjct: 177 KRLGLPVAHKPDSQEICFIPDHDYASFIEEYTGRELPPGNFVDLDGRVLGRHRGITHYTV 236 Query: 265 GQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGF 324 GQR+GL ++MG P+FVV + ++ V++G E + + + ++NW+ Sbjct: 237 GQRKGLNLSMGRPVFVVEIRPETNEVVIGNNEDVFTNVLRCDKLNWMAVDGLHGKP---M 293 Query: 325 KCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 KIR S P + + DD V F + V GQA VFY D V GGG I Sbjct: 294 DVMAKIRYSHRGSPCTIREIGDDMVECCFHEPVRAVTPGQAVVFYDGD----YVAGGGTI 349 >gi|160931216|ref|ZP_02078618.1| hypothetical protein CLOLEP_00053 [Clostridium leptum DSM 753] gi|156869771|gb|EDO63143.1| hypothetical protein CLOLEP_00053 [Clostridium leptum DSM 753] Length = 357 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 145/368 (39%), Positives = 200/368 (54%), Gaps = 15/368 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78 +V++ MSGGVDSSV A LL + GYDV GVT++L + A + G CC+ D+ DARR Sbjct: 2 KKKVMLGMSGGVDSSVAALLLLQQGYDVTGVTMKLRPDQYMAESQSGGCCSLDDIDDARR 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + H V ++ + F VI FAS Y AG TP PC+ CN VKF LL L Sbjct: 62 VAYRLGIEHLVLNFTQVFSEKVIDYFASEYLAGRTPNPCIACNAHVKFDALLRKALSLEY 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + + + R ++ + +DQSY L+ TQ QL PL M+K Sbjct: 122 DYVATGHYA----VITQNDEGRWLLKKAPC-SKDQSYVLYHLTQHQLAHTLMPLAGMEKS 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R+LARE GL +A K DSQ+ICFVQ Y ++R G+ + G +LG H G Sbjct: 177 EARELAREAGLPVAHKPDSQEICFVQDNDYASFIRRYTGKEPPPGNFIDQAGNVLGTHKG 236 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I +YTIGQR+GLG++ G+P+FV +D S+ V +G S + ++N + E Sbjct: 237 ITHYTIGQRKGLGISFGKPMFVTKIDPISNTVTLGENGSQYASSLIAGKVNLISADTLEA 296 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + VK+R P P + D+G + VDF++ + V GQA VFY D V Sbjct: 297 PIS----AQVKVRYQAPPAPARLTPLDNGKIRVDFQEPQRSVTPGQAAVFYDGD----LV 348 Query: 378 LGGGIISG 385 LGGGII Sbjct: 349 LGGGIIET 356 >gi|262278275|ref|ZP_06056060.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter calcoaceticus RUH2202] gi|262258626|gb|EEY77359.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter calcoaceticus RUH2202] Length = 377 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 120/379 (31%), Positives = 197/379 (51%), Gaps = 23/379 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ V Sbjct: 2 QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAV 58 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + + ++ + + V F + YAAG TP P + CN+ +KF L LGAD Sbjct: 59 ADKIGIKLHTANFAMEYWDRVFELFLAEYAAGRTPNPDILCNKEIKFRAFLDHAITLGAD 118 Query: 140 VLATGHYIRS-RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R G+ + R +D +DQ+YFL A +++ FP+G+++K Sbjct: 119 FIATGHYARRGETAYNSKGEAYAPLLRGVDNNKDQTYFLHAVHGKEINKTLFPVGEIEKP 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E+ L A K DS ICF+ + ++ D +K+ A G IV G+ +G H+G Sbjct: 179 EVRRIAEELDLATAKKKDSTGICFIGERRFNDFLKQYLP--AQPGKIVLDTGKEVGEHHG 236 Query: 259 IINYT-----IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 ++ YT GL A FV++ D ++R+++G ++ +++ I+W Sbjct: 237 LMYYTLGQRGGIGLGGLKGAAEGAWFVLHKDIANNRLVIGQGHEHPLMQSTQLWSESIDW 296 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVASGQACVF 367 + ++ +G +C K R Q V + ++ GV V+F++ + V GQ+ VF Sbjct: 297 VAGE--QNIPAEGLRCTAKTRYRQPDQACTVFNDENSEHGVRVEFDEPQRAVTPGQSVVF 354 Query: 368 YTSDSNEARVLGGGIISGS 386 Y+ + LGGG+I + Sbjct: 355 YSDEV----CLGGGVIHHT 369 >gi|157964381|ref|YP_001499205.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia massiliae MTU5] gi|157844157|gb|ABV84658.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia massiliae MTU5] Length = 374 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 185/371 (49%), Positives = 244/371 (65%), Gaps = 13/371 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +VVAMSGGVDSS VAA+L G++VIG+TLQLY+ A +K +CCAGQD+YDA+ Sbjct: 16 KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 75 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + HYV DYE +F+ +VI F SY GETPLPCV CN++VKF DL+ R+LGA Sbjct: 76 VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVRCNKSVKFRDLIKTARELGA 135 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY+R GD+G + +D +DQSYFLF TT++QL LRFPLG + K+ Sbjct: 136 DKLATGHYVRK--INGDNGAE---LYTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGLTKD 190 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R LA + GL++ADK DSQDICFV G Y V+ +I + G I+H+NG LG H+G Sbjct: 191 ETRKLASKFGLEVADKPDSQDICFVPDGNYKSVINKIRPNSSESGKIIHVNGFKLGEHSG 250 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 IINYTIGQRRGLG+A EPL+VV +D + V VGP +L V +R++NWL D + ++ Sbjct: 251 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDN 310 Query: 319 AVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + VKIRS++ P + + DD + V F +E VA GQACV Y + RV Sbjct: 311 ---EKLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCAEKAVAPGQACVIYAGE----RV 363 Query: 378 LGGGIISGSKR 388 LGGG I+ R Sbjct: 364 LGGGWITREIR 374 >gi|163731902|ref|ZP_02139349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseobacter litoralis Och 149] gi|161395356|gb|EDQ19678.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseobacter litoralis Och 149] Length = 380 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 186/386 (48%), Positives = 249/386 (64%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + + LNSL K P RVVVAMSGGVDSSVVAA+L +GYDV+GVTLQLY+ A Sbjct: 1 MPLDPSPMLNSLGFAKPPAQTRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + + HYV DYE F++AVI FA SY G TP+PC+ C Sbjct: 61 LAKKGACCAGLDIHDARRVSEKMGFPHYVLDYENIFKDAVIDEFAESYLGGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL + L AD +ATGHYI+ + G + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETAKDLDADCMATGHYIQRKS-----GPCGAELHSAADANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + KE R LA + GL +A+K DSQDICFV G Y V++++ Sbjct: 176 TPEQLAFLRFPLGHLPSKEDTRALAEKYGLSVANKPDSQDICFVPNGDYASVIRKLRPEA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IV ++G++L H+G+IN+TIGQRRGLG+ + PL+V+ LD + +V+VGP+ L Sbjct: 236 AAPGNIVDVDGRVLATHDGVINFTIGQRRGLGIGGLATPLYVIKLDAQTRQVVVGPKSML 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + +REINWLGD + D + VK+RS++ P ++ ++ V+ E Sbjct: 296 STRTVPVREINWLGDEPLQSR--DEWHLAVKVRSTRPPTDAIIRPISETEATVELTSPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 GV+ GQACVFY +DS +R+ GGG I Sbjct: 354 GVSPGQACVFYDTDS--SRIYGGGWI 377 >gi|291519700|emb|CBK74921.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Butyrivibrio fibrisolvens 16/4] Length = 354 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 140/367 (38%), Positives = 210/367 (57%), Gaps = 15/367 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRV 79 M+ ++AMSGGVDSSV A L+K +GY+ IG T++LY N +CC+ DV DA+ V Sbjct: 1 MKALIAMSGGVDSSVAALLMKENGYECIGCTMKLYGNEDVDLSDTSTCCSLDDVQDAKDV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + HY ++++++F+ VI F Y TP PC++CN+ +KF +L ++LG D Sbjct: 61 ARKLGMLHYTWNFKDQFKEKVIDNFTYCYEHAMTPNPCIECNKHLKFCELYRRAKELGCD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 + TGHY R R D+G + + D +DQSY L++ TQ +L FPLG+ K+ Sbjct: 121 KIVTGHYARVRKC--DNG---YQLLKGKDASKDQSYVLYSMTQDELAHTDFPLGEYSKDE 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R +A + A+K DSQDICFV G Y +KR GD V + G +LGRH G+ Sbjct: 176 IRRIAEKNEFVNANKPDSQDICFVPNGDYVSALKRFTGKEYEPGDFVDMEGNVLGRHKGL 235 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 + YTIGQR+GLG++ PL+VV LD ++V++G E L +Y+ +INW+G + Sbjct: 236 VCYTIGQRKGLGISAAYPLYVVKLDTEKNQVVLGKNEDLFSRDVYVEDINWIG----PEE 291 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + F+C K+R P VQR + F++ + + GQ+ VFY + VL Sbjct: 292 LPETFRCAAKVRYRMVEQPCEVQRLGKTSAKILFDEPQRAITPGQSAVFYDGEI----VL 347 Query: 379 GGGIISG 385 GGGII Sbjct: 348 GGGIIKS 354 >gi|291527010|emb|CBK92596.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium rectale M104/1] Length = 362 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 141/369 (38%), Positives = 201/369 (54%), Gaps = 15/369 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDAR 77 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ K+ +G CC V DAR Sbjct: 2 KKKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDVFKQSQEGGCCGLSAVEDAR 61 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV +++ +YV +++ F+ VI F S Y TP PC+ CNR VK+ LL + ++G Sbjct: 62 RVAAVLDIPYYVMNFKADFKKYVIDYFVSEYERAYTPNPCIACNRYVKWESLLHRSLEIG 121 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY R R + + E+DQ+Y L+ TQ+QL P+G+ +K Sbjct: 122 ADYIATGHYARIAQLP----NGRYTIANSVTAEKDQTYALYNLTQEQLRRTLMPVGEYEK 177 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 +R +A E GL +A KSDSQDICFV Y ++ G+ V +G ILGRH Sbjct: 178 PQIRRIAEEAGLPVAHKSDSQDICFVPDHDYASFIENETGKTYEPGNFVDESGNILGRHK 237 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 G+I+YTIGQR+GLG+ PLFV L ++ V++ ESL Y+ +IN++ + Sbjct: 238 GLIHYTIGQRKGLGITAATPLFVKELRPATNEVVISTNESLFSDTCYISDINYMA----Q 293 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 D + + K+R S + ++G + F++ + + GQA VFY Sbjct: 294 DHITPDTRSIGKVRYSHRGADCTLTPMENGMIKCVFDEPQRAMTPGQAAVFYQD----GH 349 Query: 377 VLGGGIISG 385 VL GG I Sbjct: 350 VLCGGTIEK 358 >gi|315652097|ref|ZP_07905095.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium saburreum DSM 3986] gi|315485589|gb|EFU75973.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium saburreum DSM 3986] Length = 363 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 140/368 (38%), Positives = 203/368 (55%), Gaps = 14/368 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDA 76 + +VVV MSGGVDSSV A LLK GYDV GVT+Q++ S GS CC V DA Sbjct: 2 EKKKVVVGMSGGVDSSVAAYLLKEAGYDVTGVTMQIWQSEDEEDMSGSGGCCGLSAVDDA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV I + +YV ++ + F++ VI F + Y TP PC+ CNR VK+ LL + L Sbjct: 62 RRVARDIGIPYYVMNFRDEFKDKVIDYFVNEYVQARTPNPCIACNRYVKWESLLERSMML 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R R + +DQ+Y L+ TQ QL P+GD + Sbjct: 122 GADYIATGHYARIEKL----ENGRYALRTSKTSAKDQTYALYNLTQDQLSRTLMPVGDYE 177 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ +R++A++ L +A+K DSQ+ICFV Y V+ EG+ V +G+ILG+H Sbjct: 178 KDEIREIAKKFNLRVANKPDSQEICFVSDNDYASFVESEIGKKMPEGNFVTADGEILGKH 237 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GI++YTIGQR+GLG+A+G P+FV + +++ V++G E + + + +N + Sbjct: 238 KGILHYTIGQRKGLGIALGHPIFVTEIRPDTNEVVIGENEDVFGYSLEANNLN----AMA 293 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + DG + KIR S ++ +D + +DF+K + GQA V Y Sbjct: 294 VEKFFDGMRAVGKIRYSHKGEHCSIKVIGEDRIRIDFDKKVRAITPGQAVVLYD---ESG 350 Query: 376 RVLGGGII 383 VLGGG I Sbjct: 351 LVLGGGTI 358 >gi|15892333|ref|NP_360047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia conorii str. Malish 7] gi|20455354|sp|Q92IL0|MNMA_RICCN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|15619478|gb|AAL02948.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia conorii str. Malish 7] Length = 370 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 184/371 (49%), Positives = 243/371 (65%), Gaps = 13/371 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +VVAMSGGVDSS VAA+L G++VIG+TLQLY+ A +K +CCAGQD+YDA+ Sbjct: 12 KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 71 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + HYV DYE +F+ +VI F SY GETPLPCV CN++VKF DL+ R+LGA Sbjct: 72 VANKLGIPHYVLDYENKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 131 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY+R GD+G + +D +DQSYFLF TT++QL LRFPLG + K+ Sbjct: 132 DKLATGHYVRK--INGDNGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGLTKD 186 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R LA + GL++ADK DSQDICF+ G Y V+ +I + G I+H+NG LG H+G Sbjct: 187 ETRKLASKFGLEVADKPDSQDICFIPDGNYKSVINKIRPNSSESGKIIHVNGFELGEHSG 246 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 IINYTIGQRRGLG+A EPL+VV +D + V VGP +L V +R++NWL D + ++ Sbjct: 247 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDN 306 Query: 319 AVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + VKIRS++ P + + DD + V F E VA GQACV Y + RV Sbjct: 307 ---EKLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCEEKAVAPGQACVIYAGE----RV 359 Query: 378 LGGGIISGSKR 388 LGGG I+ R Sbjct: 360 LGGGWITREIR 370 >gi|52841619|ref|YP_095418.1| tRNA-specific 2-thiouridylase MnmA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|81603374|sp|Q5ZVQ1|MNMA_LEGPH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|52628730|gb|AAU27471.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|307610092|emb|CBW99633.1| hypothetical protein LPW_14011 [Legionella pneumophila 130b] Length = 361 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 120/376 (31%), Positives = 185/376 (49%), Gaps = 27/376 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDSSV A LLK GY V G+ ++ + + C A +D+ DA+ VC+ Sbjct: 4 KVIVGMSGGVDSSVAAWLLKEQGYQVEGLFMKNWEQDDHND---YCPAAKDLADAQAVCN 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + ++ + + + V F S Y G TP P V CN+ +KF+ L+ LGAD + Sbjct: 61 QLRIPLHTVNFSKEYWDRVFAYFLSEYEKGRTPNPDVLCNKEIKFNAFLNHALTLGADYI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY ++ + + + D E+DQ+YFL A + L FP+GD K +R Sbjct: 121 ATGHYAKNTIE-----GSIGYLFKAKDREKDQTYFLHAVEPEALSKTIFPIGDFTKPQIR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 + A+++GL K DS ICF+ + ++ + +A G+I G+ LG+H+G++ Sbjct: 176 EFAKQLGLVTHAKKDSTGICFIGEKRFKTFLNEFI--LAKPGEIKSTGGKTLGQHDGLMF 233 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313 YT+GQR+GLG+ EP +VV D S+ + V L + I+WL D Sbjct: 234 YTLGQRQGLGIGGLQNSTDEPWYVVDKDIASNTLYVAQGSQHPMLYSQGLICGPIHWLAD 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 + CF K R Q + D+ YV F + + GQ VFY + Sbjct: 294 YENHLPLT----CFAKTRYRQTDQACMISPPDNNQHYVMFSSPQRAITPGQFIVFYEKN- 348 Query: 373 NEARVLGGGIISGSKR 388 + LGG I R Sbjct: 349 ---QCLGGATIEQIIR 361 >gi|205821554|sp|A8F172|MNMA_RICM5 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 365 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 185/371 (49%), Positives = 244/371 (65%), Gaps = 13/371 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +VVAMSGGVDSS VAA+L G++VIG+TLQLY+ A +K +CCAGQD+YDA+ Sbjct: 7 KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 66 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + HYV DYE +F+ +VI F SY GETPLPCV CN++VKF DL+ R+LGA Sbjct: 67 VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVRCNKSVKFRDLIKTARELGA 126 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY+R GD+G + +D +DQSYFLF TT++QL LRFPLG + K+ Sbjct: 127 DKLATGHYVRK--INGDNGAE---LYTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGLTKD 181 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R LA + GL++ADK DSQDICFV G Y V+ +I + G I+H+NG LG H+G Sbjct: 182 ETRKLASKFGLEVADKPDSQDICFVPDGNYKSVINKIRPNSSESGKIIHVNGFKLGEHSG 241 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 IINYTIGQRRGLG+A EPL+VV +D + V VGP +L V +R++NWL D + ++ Sbjct: 242 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDN 301 Query: 319 AVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + VKIRS++ P + + DD + V F +E VA GQACV Y + RV Sbjct: 302 ---EKLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCAEKAVAPGQACVIYAGE----RV 354 Query: 378 LGGGIISGSKR 388 LGGG I+ R Sbjct: 355 LGGGWITREIR 365 >gi|205822104|sp|Q65VV2|MNMA_MANSM RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 389 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 131/392 (33%), Positives = 212/392 (54%), Gaps = 29/392 (7%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 +L++ L +N K +V+V MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 17 PKLSAEQLAENAK-KKVIVGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 72 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C A D+ DA+ V D + + + ++ + + V F + Y AG TP P + CN+ +KF Sbjct: 73 CTAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLAEYKAGRTPNPDILCNKEIKF 132 Query: 127 SDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 L LGAD +ATGHY+R R GDD R + R +D +DQSYFL+ + +Q+ Sbjct: 133 KAFLEYAAEDLGADYIATGHYVRRR---GDDENAR--LLRGLDSNKDQSYFLYTLSHKQV 187 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+GD++K VR +A ++GL A K DS ICF+ + K+ D + R A G+I Sbjct: 188 GQSLFPVGDIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKDFLARFLP--AQPGEI 245 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRES--- 297 ++G+++GRH+G++ YT+GQR+GLG+ P +V D ++ +IV Sbjct: 246 RTVDGKVIGRHDGLMYYTLGQRKGLGIGGIKGMDENPFYVAEKDLVNNVLIVAQGHDNSA 305 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSE 356 L + R+++W+ + + +C VK R Q +P +Q DD + V F++ + Sbjct: 306 LLSSGLIARQLHWVD----RQPIRENLRCTVKTRYRQTDIPCEIQPIDDETIRVIFDEPQ 361 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIISGSKR 388 + V GQ+ VFY + LGGG+I + Sbjct: 362 IAVTPGQSAVFYQGEV----CLGGGVIETQIK 389 >gi|15895501|ref|NP_348850.1| tRNA-specific 2-thiouridylase MnmA [Clostridium acetobutylicum ATCC 824] gi|24638326|sp|Q97GY2|MNMA_CLOAB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|15025232|gb|AAK80190.1|AE007723_8 TRNA 5-methylaminomethyl-2-thiouridylate)-methyltransferase, PP-loop ATPase [Clostridium acetobutylicum ATCC 824] gi|325509648|gb|ADZ21284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium acetobutylicum EA 2018] Length = 355 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 140/367 (38%), Positives = 210/367 (57%), Gaps = 15/367 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARR 78 + +VV+ MSGGVDSSV A LLK GYDVIGVT++L ++++G CC+ V DARR Sbjct: 2 NKKVVIGMSGGVDSSVAAYLLKEQGYDVIGVTMKLTPDDAFYTEQEGGCCSLSAVEDARR 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V I + YV ++ + F+ VI F Y G+TP PC+ CN+ +KF LL LGA Sbjct: 62 VAYRIGIPFYVVNFTDIFKEKVIDYFTEEYLNGKTPNPCIACNKYIKFDALLKKAESLGA 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R + R ++ + D ++DQ+Y ++ TQ QL P GD KK+ Sbjct: 122 DYIATGHYCRIV-----EENGRYVIRKSEDEKKDQTYVMYNMTQDQLKHTLMPCGDYKKD 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++ARE+GL++ DK DS++ICF+ + +KR G+ V G++LG+H G Sbjct: 177 RIREIAREIGLNVFDKKDSEEICFIPDNDHGGFIKRECPKAVKTGNFVDKEGKVLGKHKG 236 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 II YTIGQR+GLG+A G+ +FV +D ++V++G E + + + + N++ D Sbjct: 237 IIYYTIGQRKGLGIATGKRVFVTNIDAMKNQVVIGEEEEIFENELISFKNNFI----PFD 292 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + + KIR + + DD V V FEK + + GQ+ VFY D + Sbjct: 293 KLTEPMEVDAKIRYNAKASKATIYPVDDENVKVKFEKPQRAITKGQSVVFYDGD----LL 348 Query: 378 LGGGIIS 384 +GGGII Sbjct: 349 VGGGIIK 355 >gi|238922734|ref|YP_002936247.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium rectale ATCC 33656] gi|238874406|gb|ACR74113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium rectale ATCC 33656] Length = 362 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 140/369 (37%), Positives = 201/369 (54%), Gaps = 15/369 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDAR 77 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ K+ +G CC V DAR Sbjct: 2 KKKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDVFKQSQEGGCCGLSAVEDAR 61 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV +++ +YV +++ F+ VI F S Y TP PC+ CNR VK+ LL + ++G Sbjct: 62 RVAAVLDIPYYVMNFKADFKKYVIDYFVSEYERAYTPNPCIACNRYVKWESLLHRSLEIG 121 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY R R + + E+DQ+Y L+ TQ+QL P+G+ +K Sbjct: 122 ADYIATGHYARIAQLP----NGRYTIANSVTAEKDQTYALYNLTQEQLRRTLMPVGEYEK 177 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 +R +A E GL +A KSDSQDICFV Y ++ G+ V +G ILGRH Sbjct: 178 PQIRRIAEEAGLPVAHKSDSQDICFVPDHDYASFIENETGKTYEPGNFVDESGNILGRHK 237 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 G+I+YTIGQR+GLG+ PLFV L ++ V++ ESL Y+ +IN++ + Sbjct: 238 GLIHYTIGQRKGLGITAATPLFVKELRPATNEVVISTNESLFSDTCYISDINYMA----Q 293 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + + K+R S + ++G + F++ + + GQA VFY Sbjct: 294 EHITPDTRSIGKVRYSHRGADCTLTPMENGMIKCVFDEPQRAMTPGQAAVFYQD----GH 349 Query: 377 VLGGGIISG 385 VL GG I Sbjct: 350 VLCGGTIEK 358 >gi|238650755|ref|YP_002916609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia peacockii str. Rustic] gi|259495838|sp|C4K1W0|MNMA_RICPU RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|238624853|gb|ACR47559.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia peacockii str. Rustic] Length = 365 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 185/371 (49%), Positives = 242/371 (65%), Gaps = 13/371 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +VVAMSGGVDSS VAA+L G++VIG+TLQLY+ A +K SCCAGQD+YDA+ Sbjct: 7 KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNSCCAGQDIYDAKM 66 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + HYV DYE +F+ +VI F SY GETPLPCV CN++VKF DL+ R+LGA Sbjct: 67 VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 126 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY+R GD+G + +D +DQSYFLF TT++QL LRFPLG + K Sbjct: 127 DKLATGHYVRK--INGDNGAE---LHTGLDPAKDQSYFLFMTTKEQLEYLRFPLGGLTKG 181 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R LA + GL++ADK DSQDICF+ G Y V+ +I + G I+H+NG LG H+G Sbjct: 182 ETRKLASKFGLEVADKPDSQDICFIPDGNYKSVINKIRPNSSESGKIIHVNGFELGEHSG 241 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 IINYTIGQRRGLG+A EPL+VV +D + V VGP +L V +R++NWL D + ++ Sbjct: 242 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDN 301 Query: 319 AVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + VKIRS++ P + + DD + V F E VA GQACV Y + RV Sbjct: 302 ---EKLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCEEKAVAPGQACVIYAGE----RV 354 Query: 378 LGGGIISGSKR 388 LGGG I+ R Sbjct: 355 LGGGWITREIR 365 >gi|83746745|ref|ZP_00943793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia solanacearum UW551] gi|207744291|ref|YP_002260683.1| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase protein [Ralstonia solanacearum IPO1609] gi|83726514|gb|EAP73644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia solanacearum UW551] gi|206595696|emb|CAQ62623.1| probable trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase protein [Ralstonia solanacearum IPO1609] Length = 370 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 125/374 (33%), Positives = 182/374 (48%), Gaps = 27/374 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RVVV +SGGVDSSV A LLK+ GY+V+G+ ++ + S+ C QD D Sbjct: 2 SGKRVVVGLSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I+V ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 59 VADLIDVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K Sbjct: 119 DTIATGHYARVREVDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A E+GL A K DS ICF+ + + D + R G I G+ +G+H G Sbjct: 174 RVREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPIKTPEGKTIGQHIG 231 Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT+GQR+G+G+ G+ +V D ++ + V L H ++ +++W Sbjct: 232 LAFYTLGQRKGIGIGGSRDGNGDAWYVARKDMAANTLYVVQGHDHPWLLAHTVHADDLSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYT 369 + +G K R Q P V D + + F +++ V GQ+ V Y Sbjct: 292 VAGH----PPAEGTHLAAKTRYRQADAPCTVAGATDGALALAFTEAQWAVTPGQSAVLYD 347 Query: 370 SDSNEARVLGGGII 383 + LGGGII Sbjct: 348 GEV----CLGGGII 357 >gi|329894882|ref|ZP_08270681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma proteobacterium IMCC3088] gi|328922611|gb|EGG29946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma proteobacterium IMCC3088] Length = 361 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 132/378 (34%), Positives = 196/378 (51%), Gaps = 27/378 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 NPK +V+V +SGGVDSSV A L G+DV + ++ ++ ++ C A QD DA Sbjct: 2 NPKQ-KVIVGLSGGVDSSVAALCLIEQGFDVEALFMKNWDEDDDTE---YCTAMQDFADA 57 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V + + + ++ + + V F + Y AG TP P + CN+ +KF L L Sbjct: 58 SAVAAALGIVLHGANFAREYWDRVFEYFLAEYRAGRTPNPDILCNKEIKFKAFLDYALNL 117 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R+ G D + + D +DQSYFL Q L FPLGDM Sbjct: 118 GADFIATGHYART----GLDNAGLTTLQKGADPNKDQSYFLHQVPHQALAKTLFPLGDMH 173 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR+ A+ GL DK DS ICF+ + ++ D + A G IV ++G+ LG H Sbjct: 174 KTEVRERAKAAGLATFDKKDSTGICFIGERRFTDFLSTYLP--AQPGKIVAVSGEELGSH 231 Query: 257 NGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308 G++ +TIGQR+GLG+ + P +VV D +++R+IV SL R+ + + Sbjct: 232 QGLMYHTIGQRQGLGIGGTKDFGDAPWYVVDKDLDNNRLIVAQGNQHPSLFKQRLTVVDP 291 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 W+G D F+C KIR Q P V + V+F++++ + GQ+ VFY Sbjct: 292 FWIGTPPPRD-----FRCSAKIRYRQPDQPCSVSYQGGDLLVEFDQAQRAITPGQSVVFY 346 Query: 369 TSDSNEARVLGGGIISGS 386 D R LGGG+I+G+ Sbjct: 347 DGD----RCLGGGVIAGA 360 >gi|110834136|ref|YP_692995.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alcanivorax borkumensis SK2] gi|123149502|sp|Q0VQ25|MNMA_ALCBS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|110647247|emb|CAL16723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alcanivorax borkumensis SK2] Length = 364 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 119/382 (31%), Positives = 186/382 (48%), Gaps = 28/382 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K P+D RV+V MSGGVDSSV AA L GY V G+ ++ +N + C A +D+ Sbjct: 1 MTKAPQDTRVIVGMSGGVDSSVAAARLIDAGYQVEGLFMKNWNEDDGTD---YCTAREDL 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA +V + + + ++ E++ + V F + Y AG TP P + CN+ +KF L Sbjct: 58 LDAMQVAGVLGIELHTANFAEQYWDRVFAHFLAEYKAGRTPNPDILCNKEIKFQAFLDHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + + R +D +DQ+YFL A Q+ FPLG Sbjct: 118 ITLGADYIATGHYSQVSH------TGKAKLLRAVDTNKDQTYFLHAVDYQKFDRTLFPLG 171 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 D++K VR +A + G D K DS ICF+ + ++ D +++ A G I +G ++ Sbjct: 172 DLEKPEVRRIAEQKGFDNHKKKDSTGICFIGERRFKDFLEQYLP--AQPGSIEDDHGNVI 229 Query: 254 GRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 G+H+G++ YT+GQR+GLG+ P +V D + +I L + Sbjct: 230 GQHDGLMYYTLGQRQGLGIGGLASASEAPWYVAKKDLERNVLIAVQGTDHPLLYSRVLNS 289 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364 + W+ +A + K R Q V +G V V F++ + V GQ+ Sbjct: 290 APMQWVAL----EAPALPARLTAKTRYRQPDQGCTVSDAGEGRVTVTFDEPQRAVTPGQS 345 Query: 365 CVFYTSDSNEARVLGGGIISGS 386 VFY LGG +I + Sbjct: 346 VVFYDG----PVCLGGAVIEET 363 >gi|295110441|emb|CBL24394.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ruminococcus obeum A2-162] Length = 373 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 150/366 (40%), Positives = 212/366 (57%), Gaps = 13/366 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARR 78 + ++AMSGGVDSSV A L+ ++GYD G TL+LY++ + S +CC D DAR Sbjct: 2 QKKAMIAMSGGVDSSVAAYLMVQNGYDCAGATLKLYDNPQCSFPGHRACCTPSDTEDARS 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + +YVF + FR++VI FA +Y G TP PC+DCNR +KFS LL R+LG Sbjct: 62 VAARLGMLYYVFPMHDEFRHSVIDKFADTYLHGGTPNPCIDCNRFLKFSALLDKARELGC 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +A+GHY R D R I+ + +D +DQSY L+A TQ QL FPLG K+ Sbjct: 122 EYIASGHYARRE---QDPETGRFILKKGLDPTKDQSYVLYAMTQDQLAHTLFPLGGYTKK 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R +A+E G ADK DSQDICFV G Y +++ + GD V G++LG+H G Sbjct: 179 EIRHIAQEQGFINADKPDSQDICFVPDGDYASFIEQYTGQSSEPGDFVDKEGKVLGKHKG 238 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I+YTIGQRRGLG++ E L+V +S+ VI+G ++ L + Y+ +IN + D Sbjct: 239 QIHYTIGQRRGLGISAPESLYVCGKSLDSNEVILGGKQDLMSNYCYINDINLI----PWD 294 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + KC VK R Q P V++ +D + + F++ + V GQA V Y D V Sbjct: 295 HLDAPIKCKVKTRYRQPEQPATVEQIGEDLIKITFDEPQRAVTPGQAAVLYDDD----MV 350 Query: 378 LGGGII 383 LGGG I Sbjct: 351 LGGGTI 356 >gi|147677391|ref|YP_001211606.1| tRNA-specific 2-thiouridylase MnmA [Pelotomaculum thermopropionicum SI] gi|205816885|sp|A5D3F0|MNMA_PELTS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|146273488|dbj|BAF59237.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Pelotomaculum thermopropionicum SI] Length = 365 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 143/371 (38%), Positives = 216/371 (58%), Gaps = 15/371 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDA 76 + +VVVAMSGGVDSSV AALL G++VIG+T+Q++N + ++ KG CC+ + DA Sbjct: 2 EKTKVVVAMSGGVDSSVTAALLLEQGFEVIGITMQIWNPGEEAESKGERTCCSLTAIDDA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV D + +SHYV ++ F VI F S Y G TP PC+ CNR VKF LL + Sbjct: 62 RRVADKLGISHYVLNFRSIFEEKVIDYFTSEYLRGRTPNPCIACNRYVKFEALLDRALSI 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GA+ +ATGHY R Y G+ G R + RP+D +DQ+Y L+ TQ+Q+ PLG+ Sbjct: 122 GAEYIATGHYARLG-YSGEYG--RYTVRRPVDRRKDQTYVLYGMTQRQIARTMMPLGNYT 178 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A + GL +A K++SQ+ICF+ Y ++ AGI G +++ G+++GRH Sbjct: 179 KGQVRKIAEDFGLPVAGKAESQEICFILDDDYRRFLREKAAGI-KPGPFLNMKGEVIGRH 237 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 NGI YT+GQRRGLG+A GE L+VV +D ++ + +GP E++ + ++N + Sbjct: 238 NGIPFYTVGQRRGLGLAAGERLYVVKIDPENNAITLGPEEAVWGRSLIAADVNLI----L 293 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 +++ + + ++R + P V + V V F + + GQA VFY D Sbjct: 294 YESLEEPLEVEAQVRYNARTSPATLVPLPEGRVGVHFHTPQRSITPGQAVVFYRGD---- 349 Query: 376 RVLGGGIISGS 386 ++GG I + Sbjct: 350 YLIGGATIEST 360 >gi|328675274|gb|AEB27949.1| Putative tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Francisella cf. novicida 3523] Length = 358 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 128/373 (34%), Positives = 196/373 (52%), Gaps = 26/373 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +V+V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ V Sbjct: 2 PQKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQAV 58 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD+I + ++ + + V F + Y AG TP P + CN+ +KF LS LG D Sbjct: 59 CDSIGIPFKKINFAAEYWDNVFEHFLTEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGD 118 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY ++R + + +D +DQ+YFL+ Q+QL FP+G+++K Sbjct: 119 YIATGHYAQTRQAAD----GSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNVEKSK 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A+E L DK DS ICF+ + K+ + + + A +G+I NG +G H+G+ Sbjct: 175 VREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDGL 232 Query: 260 INYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINWL 311 + YTIGQR+GLG+ + P F D ++ + + G L + E++W+ Sbjct: 233 MYYTIGQRQGLGIGGVKNRPEVPWFAAKKDLANNVLIAVQGHDHPLLFKQSLQAIELSWV 292 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 A F+C K+R Q V+ N DG V V F++ + + GQ+ VFY Sbjct: 293 AGM----APAGKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDEPQRAITPGQSVVFYID 348 Query: 371 DSNEARVLGGGII 383 D LGGGII Sbjct: 349 DV----CLGGGII 357 >gi|159044055|ref|YP_001532849.1| tRNA-specific 2-thiouridylase MnmA [Dinoroseobacter shibae DFL 12] gi|205816871|sp|A8LK49|MNMA_DINSH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|157911815|gb|ABV93248.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dinoroseobacter shibae DFL 12] Length = 384 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 195/385 (50%), Positives = 246/385 (63%), Gaps = 12/385 (3%) Query: 2 VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61 S LNSL K P + RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A Sbjct: 5 TASLTPALNSLGFAKPPSETRVVVAMSGGVDSSVVAAELACEGYDVVGVTLQLYDHGAAL 64 Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 +KG+CCAG+D++DARRV + + HYV DYE FR AVI FA SY G TP+PC+ CN Sbjct: 65 AKKGACCAGRDIHDARRVAEEMGFPHYVLDYENTFREAVIDEFADSYLGGATPVPCIRCN 124 Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181 VKF DLL R L AD +ATGHYI+ ++ G + + D RDQSYFLF+TT Sbjct: 125 ERVKFKDLLETARDLEADCMATGHYIQRKM-----GPAKAELHSAADANRDQSYFLFSTT 179 Query: 182 QQQLCDLRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 Q+QL LRFPLG + K R LA + GL +ADK DSQDICFV G Y V++++ G Sbjct: 180 QEQLDYLRFPLGHLASKAETRALAAKHGLSVADKPDSQDICFVPNGDYASVIEKLRPGAG 239 Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLE 299 G+IV ++G +LG H G+I+YTIGQRRGLG+ E PL+VV LD ++ RVIVGP+E+L Sbjct: 240 EPGEIVDMDGTVLGAHRGVIHYTIGQRRGLGIGGLETPLYVVKLDPDARRVIVGPKEALS 299 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVG 358 + LREINWLGD + VK+RS++ P ++ +D V+ E G Sbjct: 300 TRHVPLREINWLGDAPLSSRA--EWPIAVKVRSTRPPRDAILRPISDTEATVELLTPEEG 357 Query: 359 VASGQACVFYTSDSNEARVLGGGII 383 V+ GQACVFY D R+ GGG I Sbjct: 358 VSPGQACVFYDPD--GTRIFGGGWI 380 >gi|34580653|ref|ZP_00142133.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia sibirica 246] gi|28262038|gb|EAA25542.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia sibirica 246] Length = 365 Score = 465 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 184/371 (49%), Positives = 242/371 (65%), Gaps = 13/371 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +VVAMSGGVDSS VAA+L G++VIG+TLQLY+ A +K +CCAGQD+YDA+ Sbjct: 7 KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 66 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + HYV DYE +F+ +VI F SY GETPLPCV CN++VKF DL+ R+LGA Sbjct: 67 VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 126 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY+R GD+G + +D +DQSYFLF TT++QL LRFPLG K+ Sbjct: 127 DKLATGHYVRK--INGDNGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGFTKD 181 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R LA + GL++ADK DSQDICF+ G Y V+ +I + G I+H+NG LG H+G Sbjct: 182 ETRKLASKFGLEVADKPDSQDICFIPDGNYKSVINKIRPNSSESGKIIHVNGFELGEHSG 241 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 IINYTIGQRRGLG+A EPL+VV +D + V VGP +L V +R++NWL D + ++ Sbjct: 242 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDN 301 Query: 319 AVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + VKIRS++ P + + DD + V F E VA GQACV Y + RV Sbjct: 302 ---EKLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCEEKAVAPGQACVIYAGE----RV 354 Query: 378 LGGGIISGSKR 388 LGGG I+ R Sbjct: 355 LGGGWITREIR 365 >gi|254375237|ref|ZP_04990717.1| hypothetical protein FTDG_01428 [Francisella novicida GA99-3548] gi|151572955|gb|EDN38609.1| hypothetical protein FTDG_01428 [Francisella novicida GA99-3548] Length = 359 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 130/374 (34%), Positives = 203/374 (54%), Gaps = 26/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V+V +SGGVDSSV A LLK+ GYDV GV ++ + + C A QD+ DA+ Sbjct: 2 ENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEF---CSAEQDIADAQA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD+I + ++ + + V F Y AG TP P + CN+ +KF LS LG Sbjct: 59 VCDSIGIRFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGG 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R+R+ +DG + + + +D +DQ+YFL+ Q+QL FP+G+++K Sbjct: 119 NYIATGHYARTRVL--EDGSVQ--LVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKS 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A+E L DK DS ICF+ + K+ + + + A +G+I NG +G H+G Sbjct: 175 KVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLP--AQKGEIHDENGIKIGMHDG 232 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGP-RESLEVHRIYLREINW 310 ++ YTIGQR+GLG+ + P F D ++ + + G L + E++W Sbjct: 233 LMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSW 292 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + A D F+C K+R Q V+ N DG V V F++ + + GQ+ VFY Sbjct: 293 VAGM----APADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYI 348 Query: 370 SDSNEARVLGGGII 383 D LGGG+I Sbjct: 349 DDV----CLGGGVI 358 >gi|153813145|ref|ZP_01965813.1| hypothetical protein RUMOBE_03554 [Ruminococcus obeum ATCC 29174] gi|149830800|gb|EDM85890.1| hypothetical protein RUMOBE_03554 [Ruminococcus obeum ATCC 29174] Length = 375 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 151/366 (41%), Positives = 210/366 (57%), Gaps = 13/366 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARR 78 + ++AMSGGVDSSV A L+ ++GYD G TL+LY++ + S +CC D DAR Sbjct: 12 QKKAIIAMSGGVDSSVAAYLMVKEGYDCAGATLKLYDNPQCSFPGHRACCTPSDTEDARS 71 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + +YVF + FR++VI FA +Y G TP PC+DCNR +KFS LL R+LG Sbjct: 72 VAARLGMLYYVFPMHDEFRHSVIDKFADTYLHGGTPNPCIDCNRFLKFSALLDKARELGC 131 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +A+GHY R D R I+ + +D +DQSY L+A TQ QL FPLG K+ Sbjct: 132 EYIASGHYARRE---QDPETGRFILKKGLDPTKDQSYVLYAMTQDQLAHTLFPLGSYTKK 188 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R +A++ G ADK DSQDICFV G Y +++ + GD V G +LG+H G Sbjct: 189 EIRHIAQKQGFINADKPDSQDICFVPDGDYASFIEQYTGQSSEPGDFVDKEGNVLGKHKG 248 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I+YTIGQRRGLG++ E L+V +S++VI+G ++ L Y+ +IN + D Sbjct: 249 QIHYTIGQRRGLGISAPESLYVCGKSLDSNKVILGGKQDLMSTCCYINDINLI----PWD 304 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + KC VK R Q P V+ DD + + FE+ + V GQA V Y D V Sbjct: 305 HLDKPIKCKVKTRYRQPEQPATVEQLGDDLLKITFEEPQRAVTPGQAAVLYDGD----MV 360 Query: 378 LGGGII 383 LGGG I Sbjct: 361 LGGGTI 366 >gi|113869080|ref|YP_727569.1| tRNA-specific 2-thiouridylase MnmA [Ralstonia eutropha H16] gi|123133633|sp|Q0K720|MNMA_RALEH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|113527856|emb|CAJ94201.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ralstonia eutropha H16] Length = 361 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 124/373 (33%), Positives = 179/373 (47%), Gaps = 26/373 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ + S+ C QD D V Sbjct: 5 GKRVVVGMSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSE---YCSTRQDWLDVVSV 61 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I V ++ +++ V F Y+AG TP P V CN +KF L LGA+ Sbjct: 62 ADLIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAE 121 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R + R + + +D +DQSYFL Q QL FPLG++ K Sbjct: 122 TIATGHYARVRQ----NAAGRFELLKALDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKTR 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A E+GL A K DS ICF+ + + D + R G + G+++G H G+ Sbjct: 178 VREIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPEGKVVGEHIGL 235 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 YT+GQR+G+G+ G+ +V D ++ + V L + +++W+ Sbjct: 236 AFYTLGQRKGIGLGGSREGNGDAWYVARKDMANNTLYVVQGHDHPWLLTPVLTASDLSWV 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTS 370 K R Q VQ D D + + F +++ V GQ+ V Y Sbjct: 296 AGEPPAAGAAMAA----KTRYRQSDAACTVQAVDGDALTLRFAEAQWAVTPGQSAVLYDG 351 Query: 371 DSNEARVLGGGII 383 D LGGGII Sbjct: 352 DI----CLGGGII 360 >gi|126207646|ref|YP_001052871.1| tRNA-specific 2-thiouridylase MnmA [Actinobacillus pleuropneumoniae L20] gi|205811077|sp|A3MYN0|MNMA_ACTP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|126096438|gb|ABN73266.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 389 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 125/391 (31%), Positives = 209/391 (53%), Gaps = 29/391 (7%) Query: 4 SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63 + +L + L +N K +V++ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 14 THFAKLTAEQLAENAK-KKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD- 71 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 C A D+ DA+ V D + + + ++ + + V F + Y AG TP P + CN+ Sbjct: 72 --YCTAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKE 129 Query: 124 VKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 +KF L LGAD +ATGHY+R GDD + + R +D +DQSYFL+ + Sbjct: 130 IKFKAFLEYAAEDLGADYIATGHYVRR---SGDDNNAQ--LLRGLDANKDQSYFLYTLSH 184 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 +Q+ FP+GD++K VR +A ++GL A K DS ICF+ + K+ D + R A Sbjct: 185 KQVGQSLFPVGDIEKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQP 242 Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES 297 G+I + G+++GRH+G++ +T+GQR+GLG+ +P +VV D ++ ++V Sbjct: 243 GEIRTVGGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHD 302 Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFE 353 L + +++W+ + + +C VK R Q + +Q +DD + V F+ Sbjct: 303 NSALLSSGLIATQLHWVD----RQPIRENLRCTVKTRYRQTDIACEIQPIDDDTIRVIFD 358 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 ++ V GQ+ VFY + LGGG+I Sbjct: 359 DPQIAVTPGQSAVFYQGEV----CLGGGVIE 385 >gi|187478638|ref|YP_786662.1| tRNA-specific 2-thiouridylase MnmA [Bordetella avium 197N] gi|123514648|sp|Q2KZ71|MNMA_BORA1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|115423224|emb|CAJ49755.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bordetella avium 197N] Length = 370 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 125/378 (33%), Positives = 184/378 (48%), Gaps = 28/378 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K RVVV MSGGVDSSV A LLK+ GY+V+G+ ++ + S+ C QD+ DA Sbjct: 7 KKGRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQDLLDAAS 63 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I V ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 64 VADLIGVEFEYVNFASEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGA 123 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R R G +R + + +D +DQSYFL Q QL FPLG++ K Sbjct: 124 EHIATGHYARVRAVDTARG-QRFQLLKALDASKDQSYFLHRLNQAQLSRTLFPLGELHKT 182 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E+GL A K DS ICF+ + + + + R G I+ G+ LG+H+G Sbjct: 183 EVRRIAHEIGLHNAAKKDSTGICFIGERPFREFLNRYLPTA--PGPILTPEGRRLGQHHG 240 Query: 259 IINYTIGQRRGLGVAM----------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 + YT+GQR+GLG+ + + D ++ + V L + Sbjct: 241 LAFYTLGQRKGLGIGGVKGQQREDGTADAWYSARKDLKNNALYVVQGHDHPWLLSDTLRA 300 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 +++NW+ K R Q P ++ ++ G + F +++ V GQ+ Sbjct: 301 QDVNWVDGEAPAAGAYAA-----KTRYRQADAPCELRADEAGFDLSFAQAQWAVTPGQSA 355 Query: 366 VFYTSDSNEARVLGGGII 383 V Y D LGGGII Sbjct: 356 VLYDGDV----CLGGGII 369 >gi|313905756|ref|ZP_07839115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium cellulosolvens 6] gi|313469362|gb|EFR64705.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium cellulosolvens 6] Length = 363 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 147/372 (39%), Positives = 206/372 (55%), Gaps = 13/372 (3%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVY 74 + KD VVV MSGGVDSSV A LLK GY+VIGVT+Q++ + +G CC V Sbjct: 2 SNKDKTVVVGMSGGVDSSVAAYLLKEQGYNVIGVTMQIWQDESECRLENEGGCCGVTAVE 61 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DARRV + + +YV +++E F+ VI F Y G TP PC+ CNR VK+ LL+ + Sbjct: 62 DARRVAGVLGIPYYVMNFKEEFQKNVIDYFVDEYLHGRTPNPCIACNRYVKWESLLTKSL 121 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 +GAD +ATGHY R R R + + ++DQ+Y L+ TQ QL P+GD Sbjct: 122 AIGADYIATGHYARIRHLD----NGRYAIANSVTAKKDQTYALYGLTQNQLAHTLMPVGD 177 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 +K VR++A GL +A KSDSQ+ICFV G Y ++R + + EG+ V +G++LG Sbjct: 178 YEKPKVREIAERAGLPVAHKSDSQEICFVPDGDYASFIERDSGIVMPEGNFVTKDGEVLG 237 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 RH GI +YT+GQRRGL + MG +FV + ++ V+VG E + + +N++G G Sbjct: 238 RHRGITHYTVGQRRGLDLPMGRRVFVTEIRPETNEVVVGEAEDVWSETLKANRLNFMGIG 297 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSN 373 D F KIR + V+R +D + F+ V GQA VFY D Sbjct: 298 DLPLGEEDHF--LAKIRYNHAGTGCRVKRTGEDEITCVFDDPVRAVTPGQALVFYKDD-- 353 Query: 374 EARVLGGGIISG 385 V GGG+I Sbjct: 354 --YVAGGGVIVS 363 >gi|259416977|ref|ZP_05740897.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Silicibacter sp. TrichCH4B] gi|259348416|gb|EEW60193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Silicibacter sp. TrichCH4B] Length = 381 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 193/386 (50%), Positives = 255/386 (66%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + +NSL K+P + RVVVAMSGGVDSSVVAA L GYDV+GVTLQLY+ A Sbjct: 1 MALDNEAPVNSLGFAKSPAETRVVVAMSGGVDSSVVAAYLAEQGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + HYV DYE F++AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL + L AD +ATGHYI+ ++ G+ + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETAKDLEADCMATGHYIQRKM-----GEHGPELHSAEDANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K++ R++A + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 TPEQLDFLRFPLGHLPSKDATREMAAQYGLSVADKPDSQDICFVPNGDYASVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G IVH +G++LG HNG+I+YTIGQRRGLG+ + EPL+VV LD + +VIVGP++ L Sbjct: 236 AEPGQIVHADGRVLGEHNGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDKKKVIVGPKDML 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 R+ +REINWLGD F + VK+RS++ P ++ +D V+ +E Sbjct: 296 ATRRVPVREINWLGDEPFTSRT--EWHLSVKVRSTRPPRDAIIRPISDTEAEVELFSAEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 G++ GQACVFY D N +R+ GGG I Sbjct: 354 GISPGQACVFY--DPNGSRIFGGGWI 377 >gi|268608557|ref|ZP_06142284.1| tRNA-specific 2-thiouridylase MnmA [Ruminococcus flavefaciens FD-1] Length = 358 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 147/368 (39%), Positives = 211/368 (57%), Gaps = 15/368 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK---ASKRKGSCCAGQDVYDAR 77 +V+V MSGGVDSSV A LL+ GYDV+GVTL+L++ A K +CCA DV DAR Sbjct: 2 KKVMVGMSGGVDSSVAAMLLREQGYDVMGVTLKLFSDEDIDQAQKEGKTCCALSDVEDAR 61 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 V + H VF++++ FR V+ F+ SY G TP PC++CNR VKF +L +L Sbjct: 62 SVARRLGFEHLVFNFKDNFREHVMKQFSDSYLCGRTPNPCIECNRHVKFDKMLRRALELE 121 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D +ATGHY D+ + R ++ R D +DQ+Y L++ TQ+QL FPLG + K Sbjct: 122 YDYIATGHYAVCEY---DEERGRWLLKRSADRSKDQTYVLYSLTQEQLSHTLFPLGSLDK 178 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR+LA + GL ++K DSQDICFV G Y ++R G+ V + G++LG H Sbjct: 179 TQVRELAEKAGLVNSNKPDSQDICFVPDGDYAGFIRRFTGTDVPHGNFVDMEGKVLGEHK 238 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GIINYT+GQR+GLG+++G+P +VV D +++ V +G L + + N + Sbjct: 239 GIINYTVGQRKGLGISLGKPAYVVKKDVDTNTVTLGDESDLYTKTLIADDFNLISVA--- 295 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEAR 376 + + + K R SQ+ P V +G Y V+F++ + V SGQA V Y D Sbjct: 296 -ELTEPMRVTAKTRYSQNEQPATVSYLGNGEYMVEFDQPQRAVTSGQAVVLYDGDI---- 350 Query: 377 VLGGGIIS 384 V+GGG I Sbjct: 351 VVGGGTIK 358 >gi|126736443|ref|ZP_01752184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseobacter sp. CCS2] gi|126713981|gb|EBA10851.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseobacter sp. CCS2] Length = 379 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 192/380 (50%), Positives = 249/380 (65%), Gaps = 12/380 (3%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 + LNSL K+P RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A +KG+ Sbjct: 5 SPLNSLGFAKSPAQTRVVVAMSGGVDSSVVAAKLAEEGYDVVGVTLQLYDHGAALAKKGA 64 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 CCAG+D++DARRV + + HYV DYE FR AV+ FA SY G TP+PC+ CN VKF Sbjct: 65 CCAGRDIHDARRVAEEMGFPHYVLDYENTFREAVMDEFADSYLGGATPVPCIRCNERVKF 124 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 DLL + L AD +ATGHYI+ + G + D +DQSYFLF+TTQ QL Sbjct: 125 KDLLETAKDLDADCMATGHYIQRMM-----GANGAELHSAADPTKDQSYFLFSTTQDQLD 179 Query: 187 DLRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 LRFPLG KE R LA + GL +ADK DSQDICFV G Y V++++ G A G+I Sbjct: 180 YLRFPLGHHASKEETRALAAKYGLSVADKPDSQDICFVPNGDYAAVIEKLRPGAAEPGNI 239 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 V +G++LG H G+I+YTIGQRRGLG+ + +PL+VV LD + VIVGP++ L R+ Sbjct: 240 VDTDGKVLGTHKGVIHYTIGQRRGLGIGGLADPLYVVKLDVDRKEVIVGPKDLLATRRVP 299 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363 +REINW+GDG D + + V++RS++ P ++ ++ V+ +E GV+ GQ Sbjct: 300 IREINWIGDGNLMD--MGERQIAVRVRSTRPPTDAVLRPISETEAEVELLVAEQGVSPGQ 357 Query: 364 ACVFYTSDSNEARVLGGGII 383 ACVFY DS RVLGGG I Sbjct: 358 ACVFYDPDS--TRVLGGGWI 375 >gi|296135318|ref|YP_003642560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thiomonas intermedia K12] gi|295795440|gb|ADG30230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thiomonas intermedia K12] Length = 368 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 124/377 (32%), Positives = 178/377 (47%), Gaps = 26/377 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV +SGGVDSSV A LLK+ GY V+G+ ++ + S+ C QD DA V D Sbjct: 9 VVVGLSGGVDSSVSAWLLKQQGYTVVGLFMKNWEDDDDSE---YCSTRQDWLDAASVADR 65 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + ++ ++ V F YAAG TP P V CN +KF L +LGAD +A Sbjct: 66 IGIDIEAVNFAAEYKERVFADFLREYAAGRTPNPDVLCNAEIKFKAFLDHAMRLGADRIA 125 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R R + + R +D +DQSYFL Q QL FP+G++ K VR Sbjct: 126 TGHYARVR-----ETDHGFELLRGLDASKDQSYFLHRLNQAQLARTLFPVGELNKTEVRK 180 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A +GL A K DS ICF+ + + D + R G + G+ +G+H G+ Y Sbjct: 181 VAEAIGLHNARKKDSTGICFIGERPFRDFLSRYLP--TQPGAMKTPEGKTVGQHLGLAFY 238 Query: 263 TIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314 T+GQR+G+G+ GEP FV D +++IV L H + +W+ Sbjct: 239 TLGQRKGIGLGGSKSSNGEPWFVAGKDLERNQLIVAQGHDHPLLLSHTLQALSASWVSGT 298 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + K R Q Q + + + F+ + V GQ+ V Y + Sbjct: 299 APAEGACG---YGAKTRYRQVDAACRFQYQGPERFTLKFDAPQWAVTPGQSAVLYDGEV- 354 Query: 374 EARVLGGGIISGSKRSD 390 LGGGII + R+D Sbjct: 355 ---CLGGGIIEAASRND 368 >gi|56696559|ref|YP_166916.1| tRNA-specific 2-thiouridylase MnmA [Ruegeria pomeroyi DSS-3] gi|81349989|sp|Q5LST9|MNMA_SILPO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|56678296|gb|AAV94962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ruegeria pomeroyi DSS-3] Length = 375 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 194/379 (51%), Positives = 249/379 (65%), Gaps = 12/379 (3%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 LNSL K P + RVVVAMSGGVDSSVVAA L GYDV+GVTLQLY+ A +KG+C Sbjct: 2 PLNSLGFAKPPSETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAALAKKGAC 61 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 CAG D++DARRV + HYV DYE F++AVI FA SY AG TP+PC+ CN VKF Sbjct: 62 CAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRCNERVKFK 121 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL R L AD +ATGHYI+ ++ G + D RDQSYFLF+TT +QL Sbjct: 122 DLLETARDLEADCMATGHYIQRKM-----GPNGPELHCAEDANRDQSYFLFSTTPEQLDY 176 Query: 188 LRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 LRFPLG + K++ R++A + GL +ADK DSQDICFV G Y V++++ G A G+IV Sbjct: 177 LRFPLGHLPSKDATREMAAQYGLAVADKPDSQDICFVPNGNYASVIEKLRPGAAEPGEIV 236 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 H +G++LG H G+I+YTIGQRRGLG+ + EPL+VV LD + +V+VGP+E L I + Sbjct: 237 HADGRVLGSHEGVIHYTIGQRRGLGIGGLSEPLYVVRLDVDRKQVVVGPKELLATRTIPV 296 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQA 364 REINWLGD F + VK+RS++ P V+ ++ V+ E GV+ GQA Sbjct: 297 REINWLGDAPFTSRP--EWHLSVKVRSTRPPREAIVRPISETEAEVELLTPEEGVSPGQA 354 Query: 365 CVFYTSDSNEARVLGGGII 383 CVFY SD +R+ GGG I Sbjct: 355 CVFYESD--GSRIFGGGWI 371 >gi|83942322|ref|ZP_00954783.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfitobacter sp. EE-36] gi|83846415|gb|EAP84291.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfitobacter sp. EE-36] Length = 380 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 188/386 (48%), Positives = 250/386 (64%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + LNSL K P D RVVVAMSGGVDSSVVAA+L +GYDV+GVTLQLY+ A Sbjct: 1 MPLDRTPPLNSLGFAKAPADTRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 RKG+CCAG D++DARRV +++ HYV DYE F++AVI FA SY G TP+PC+ C Sbjct: 61 LARKGACCAGIDIHDARRVAESMGFPHYVLDYENVFKDAVIDEFADSYLGGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL + L AD +ATGHYI+ ++ G DG + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETAKDLDADCMATGHYIQRKM--GPDGAE---LHCAADANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K R LA + GL +ADK DSQDICFV G Y V++++ Sbjct: 176 TPEQLDYLRFPLGHLPSKNDTRALAAKYGLSVADKPDSQDICFVPNGDYASVIRKLRPEA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IV +G +L +H+G+INYTIGQRRGLG+ + +PL+VV LD ++++V+VGP+ L Sbjct: 236 ANPGNIVDTDGNVLAQHDGVINYTIGQRRGLGIGGLADPLYVVKLDADNAQVVVGPKSML 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + ++EINWLGD + V++RS++ P ++ +D V+ E Sbjct: 296 ATRTVPVKEINWLGDTPL--MSQSEWPIAVRVRSTRPPTDAILRPISDTEATVELLTPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 G++ GQACVFY +S R+ GGG I Sbjct: 354 GISPGQACVFYDPES--TRIFGGGWI 377 >gi|148656262|ref|YP_001276467.1| tRNA-specific 2-thiouridylase MnmA [Roseiflexus sp. RS-1] gi|205816909|sp|A5UV64|MNMA_ROSS1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|148568372|gb|ABQ90517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseiflexus sp. RS-1] Length = 373 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 152/378 (40%), Positives = 208/378 (55%), Gaps = 22/378 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +++VAMSGGVDSS+ AALL G+DV GVTL L+ + CC+ + ARRVC Sbjct: 3 KIMVAMSGGVDSSLAAALLHEAGHDVTGVTLHLWEGDDDRLAESLCCSQEMTESARRVCA 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + +YVF+Y+ FR VI F YA+G TP PC++CNR +KF LL+ R LG D + Sbjct: 63 QLGIPYYVFNYQREFRRYVIEYFLREYASGFTPNPCLECNREIKFRALLARARTLGFDYV 122 Query: 142 ATGHYIRSR----LYVGDDGK---------RRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 ATGHY R R + G+D + R +D E+DQSY L+ Q L L Sbjct: 123 ATGHYARIRADETRHNGEDAGLPPAERAQRTTYRLLRAVDREKDQSYMLYMLGQDDLARL 182 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 FP+G+ K VR +A GL A++ +SQDICFV G Y ++++ G I+ L Sbjct: 183 IFPIGEYTKAEVRAMAAARGLASANRPESQDICFVPGGDYRNLLREERPDALRPGPILDL 242 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 G+ +GRH G+ YTIGQRRGLG+A G+P++V LD + VIVGP +L + + Sbjct: 243 EGREVGRHQGLPLYTIGQRRGLGIATGQPMYVTALDVARNAVIVGPESALRRESLRAEWV 302 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVF 367 ++ E F C +IR+ D VP V + G V V F + + V GQA VF Sbjct: 303 TFVSGMWPE----APFDCLAQIRAHADAVPARVIPGEAGTVDVHFSRPQRAVTPGQAIVF 358 Query: 368 YTSDSNEARVLGGGIISG 385 Y D VLGGG I+ Sbjct: 359 YDGDV----VLGGGRIAR 372 >gi|67458888|ref|YP_246512.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia felis URRWXCal2] gi|75536671|sp|Q4UM73|MNMA_RICFE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|67004421|gb|AAY61347.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia felis URRWXCal2] Length = 365 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 184/371 (49%), Positives = 242/371 (65%), Gaps = 13/371 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +VVAMSGGVDSS VAA+L G++VIG+TLQLY+ A +K +CCAGQD+YDA+ Sbjct: 7 KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 66 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + HYV DYE +F+ +VI F SY GETPLPCV CN++VKF DL+ R+LGA Sbjct: 67 VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 126 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 LATGHY+R GD+G + +D +DQSYFLF TT++QL L FPLG + K+ Sbjct: 127 AQLATGHYVRK--VNGDNGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLSFPLGGLTKD 181 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R LA + GL++ADK DSQDICFV G Y V+ +I G + G I+H+NG LG H+G Sbjct: 182 ETRRLASKFGLEVADKPDSQDICFVPDGNYKSVINKIRPGASESGKIIHVNGFELGEHSG 241 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 IINYTIGQRRGLG+A EPL+VV +D + V VGP +L V ++ INWL D + ++ Sbjct: 242 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALHVQEFIIKNINWLADEIKDN 301 Query: 319 AVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + VKIRS++ P + + +DD + V F E VA GQACV Y + RV Sbjct: 302 ---EKLEVEVKIRSTRPPRLAEISKLDDDKMKVKFLSEEKAVAPGQACVIYAGE----RV 354 Query: 378 LGGGIISGSKR 388 LGGG I+ R Sbjct: 355 LGGGWITRDIR 365 >gi|237749060|ref|ZP_04579540.1| tRNA-specific 2-thiouridylase mnmA [Oxalobacter formigenes OXCC13] gi|229380422|gb|EEO30513.1| tRNA-specific 2-thiouridylase mnmA [Oxalobacter formigenes OXCC13] Length = 367 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 124/384 (32%), Positives = 182/384 (47%), Gaps = 33/384 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 +VV+ MSGGVDSSV A LLK GY+V+G+ ++ + + C A QD DA Sbjct: 2 SKKKVVIGMSGGVDSSVSAWLLKEQGYEVVGLFMKNWEDDDDGE---YCSARQDWLDAVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I V V ++ ++ V F Y AG TP P V CN +KF L LGA Sbjct: 59 VADVIGVDIEVVNFAAEYKERVFSEFLREYEAGRTPNPDVLCNAEIKFKAFLDHAVSLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R R + + + +D +DQSYFL Q+QL FPLG+++K Sbjct: 119 EQIATGHYARVR-----ENNGLFELMKAVDDTKDQSYFLHRLNQKQLSKAIFPLGEIRKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A ++GL A K DS ICF+ + + + R + G I G+ +G+H G Sbjct: 174 EVRKIAEKLGLPNAKKKDSTGICFIGERPFRAFLNRYLSYE--PGPIKTPEGKEIGQHVG 231 Query: 259 IINYTIGQRRGLGVAM----------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 + YTIGQR+G+G+ + +V D ++ + V L + Sbjct: 232 LSFYTIGQRKGIGIGGLKSFKNPDGTSDAWYVARKDIQNNTLYVVQGHDHPWLLSPELIA 291 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQA 364 + +W+ E+ VK R Q V + + DD V+F+ + V GQ+ Sbjct: 292 TQSSWIAGFSPENQA-----LSVKTRYRQKDVAGTLNVKGDDAFSVNFDAPQWAVTPGQS 346 Query: 365 CVFYTSDSNEARVLGGGIISGSKR 388 VFY D LGGGII + + Sbjct: 347 AVFYKGDV----CLGGGIIDNNSK 366 >gi|114768812|ref|ZP_01446438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha proteobacterium HTCC2255] gi|114549729|gb|EAU52610.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha proteobacterium HTCC2255] Length = 382 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 188/386 (48%), Positives = 257/386 (66%), Gaps = 11/386 (2%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 +++ LNS+ K+PKD RV+VAMSGGVDSSVVAA+L +GYDV+GVTLQLY+ A Sbjct: 4 IMIQNTKALNSMGFAKDPKDTRVLVAMSGGVDSSVVAAMLSEEGYDVVGVTLQLYDHGAA 63 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG+D+ DARRV + + HYV DYE +F+ +VI FA +Y AG TP+PC+ C Sbjct: 64 LAKKGACCAGRDIQDARRVAEEMGFPHYVLDYENKFKESVIDEFADAYLAGATPVPCIRC 123 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL + L AD +ATGHYI+ + G + + + D +RDQSYFLF+T Sbjct: 124 NERVKFRDLLETAKDLDADCMATGHYIQRFVENG-----KAELHKAADQDRDQSYFLFST 178 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 Q+QL LRFPLG +K K+ R+LA + GL +ADK DSQDICFV G Y V++++ Sbjct: 179 KQEQLDYLRFPLGHLKSKKDTRELAHKYGLPVADKPDSQDICFVPNGSYAAVIEKLRPEA 238 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE 299 A G IV +G +LG H GIINYT+GQRRGLG+ G+PL+V+ LD +S VIVGP+E+L Sbjct: 239 ANPGQIVSQDGAVLGEHKGIINYTVGQRRGLGIGGGDPLYVIKLDADSREVIVGPKEALA 298 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVG 358 + ++EINWLG+ F D+ V++RS++ P ++ ++ V+ +E G Sbjct: 299 TRTVLIKEINWLGEDNFLDS--KERTLAVRVRSTRSPKEAIIKPISETTATVELVMAEEG 356 Query: 359 VASGQACVFYTSDSNEARVLGGGIIS 384 +A GQACVFY D R+ GGG I+ Sbjct: 357 IAPGQACVFY--DIEGTRIYGGGWIT 380 >gi|291166309|gb|EFE28355.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Filifactor alocis ATCC 35896] Length = 371 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 124/387 (32%), Positives = 191/387 (49%), Gaps = 26/387 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V++ MSGGVDSSV A LLK+ GY+V+G+ ++ ++ + G C A QD D RV Sbjct: 3 KKVILGMSGGVDSSVSALLLKQQGYEVVGLFMKNWDEKDEG---GVCTATQDYEDVMRVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + Y ++E+ + + V F + Y G TP P V CN+ +KF+ L +L AD Sbjct: 60 GQLEIPFYTVNFEKEYWDRVFSYFLNEYEHGRTPNPDVMCNQEIKFNAFLDYALKLEADY 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A GHY G R + R D +DQSYFL T++ L FP+ D++K V Sbjct: 120 IAMGHYAGVLKKNG-----RYYLRRGKDANKDQSYFLSRITEEALSKTIFPIADLEKSEV 174 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R+LA + L A K DS +CF+ + + + + G I+ ++G+ +G H G+I Sbjct: 175 RELAEKYRLYTATKKDSTGVCFIGERNFDKFLDQFLK--TNPGLILTVDGKKIGEHTGLI 232 Query: 261 NYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDG 314 +YTIGQR+ GV GEP FV D + + V SL + ++ W+ Sbjct: 233 HYTIGQRKGIGIGGVGSGEPWFVAGKDLKKNILYVAQGEQHPSLYTTELLGEDVVWIT-- 290 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + F+ K R Q +PV V + D+GV V +++ + GQ VFY + Sbjct: 291 ---EKPQFPFRGTAKFRYRQKDIPVTVYEHQDEGVRVVYDEPVRSITPGQFAVFYDGEI- 346 Query: 374 EARVLGGGIISGSKRSDAVEESLLSVI 400 LG II+ K + E L V+ Sbjct: 347 ---CLGSAIITKGKPLNMKYEYLHDVV 370 >gi|322419745|ref|YP_004198968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacter sp. M18] gi|320126132|gb|ADW13692.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacter sp. M18] Length = 356 Score = 464 bits (1195), Expect = e-128, Method: Composition-based stats. Identities = 158/367 (43%), Positives = 213/367 (58%), Gaps = 16/367 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDAR 77 + R+VVAMSGGVDSSV AALLK G+DVIGV+LQLY + + G +CC+ DV DA Sbjct: 3 EKKRIVVAMSGGVDSSVTAALLKEQGHDVIGVSLQLYERPEQTVSGGKTCCSLTDVMDAA 62 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV + + V D ERFR VI F + YAAG TP PC CN +KF LL +T Sbjct: 63 RVARRLGIPFQVIDLRERFRELVIDDFITEYAAGRTPNPCARCNERIKFGLLLELTASFD 122 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD+LATGHY R + DG + + +D +DQ+YFLF QQQL FP+G ++K Sbjct: 123 ADLLATGHYAR----IEADGTGTYQLLKGLDPRKDQTYFLFGMNQQQLARTIFPVGRLEK 178 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR+LA L +A K +SQ+ICF+ Y ++ + G+IV +G LG H+ Sbjct: 179 HEVRELAARFNLPVAQKQESQEICFIPDNDYVRFLEE-HGVTPPAGEIVDSSGARLGTHD 237 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI YT+GQRRGLG+A EPL+V ++ +++RV+VGPRE L+ + E+ W Sbjct: 238 GIHRYTVGQRRGLGIAWKEPLYVTSIETDTARVVVGPREELQRTGLLAEELTWTD----- 292 Query: 318 DAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + F+ IR Q PVP + R D + V+F+ + GV GQA V Y +D R Sbjct: 293 SPITGTFRGSCSIRYRQKPVPCSALMREDGRLQVEFDAPQSGVTPGQAVVLYDAD----R 348 Query: 377 VLGGGII 383 V+GGG I Sbjct: 349 VVGGGWI 355 >gi|302381006|ref|ZP_07269467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Finegoldia magna ACS-171-V-Col3] gi|302311227|gb|EFK93247.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Finegoldia magna ACS-171-V-Col3] Length = 366 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 130/380 (34%), Positives = 204/380 (53%), Gaps = 24/380 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + ++VVV +SGGVDSSV A LLK+ GYDV+G+ ++ ++ G C A +D DA Sbjct: 2 DNSKIKVVVGISGGVDSSVAALLLKQQGYDVVGIFMKNWDETDDD---GVCTAEEDYKDA 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V + I + +Y ++E+ + + V F Y G TP P + CN+ +KF L +L Sbjct: 59 VAVANEICIDYYSINFEKEYYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAMKL 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R + GDDG + + R +D +DQ+YFL TQ Q+ ++ FP+G+++ Sbjct: 119 GADYVATGHYAR--IERGDDGVK---LLRGLDNNKDQTYFLSQLTQDQIKNVMFPVGELQ 173 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ VR++A++ L ADK DS ICF+ + + + + A +G+IV ++G I+G+H Sbjct: 174 KKEVREIAKKYNLATADKKDSTGICFIGERNFNEFLSHYLP--AKQGNIVDVDGNIMGKH 231 Query: 257 NGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLG 312 NG++ +TIGQRRGLG+ G FV + + +IV E L +++Y + Sbjct: 232 NGLMYHTIGQRRGLGIGGDGAAWFVCGKNLEKNELIVCQGEDNPLLYSNKLYASQF---- 287 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 + + F C K R Q + V+ DD V V ++ + V GQA VFY + Sbjct: 288 ETSLNHLDRNEFDCTAKFRYRQKDIKAHVKFIDDTHVEVTYDDT-KAVTPGQAAVFYDGE 346 Query: 372 SNEARVLGGGIISGSKRSDA 391 +G II D Sbjct: 347 V----CIGSAIIDEVYNGDK 362 >gi|224826536|ref|ZP_03699637.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lutiella nitroferrum 2002] gi|224601137|gb|EEG07319.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lutiella nitroferrum 2002] Length = 358 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 126/373 (33%), Positives = 183/373 (49%), Gaps = 28/373 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 R+VV MSGGVDSSV A LLK+ G++VIGV +Q + + C QD DA V Sbjct: 4 KKRIVVGMSGGVDSSVTAWLLKQQGHEVIGVFMQNWEDDNDDE---YCSIKQDALDAMSV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + V ++ + +++ V F Y+AG TP P V CN +KF L +LGAD Sbjct: 61 ADIVGIDMEVVNFAKEYKDRVFSYFLKEYSAGRTPNPDVLCNAEIKFKAFLDYAMELGAD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R ++ + + + +D +DQSYFL+ Q QL FPLG+++K Sbjct: 121 CIATGHYARK-----EERDGKHYLLKAVDHTKDQSYFLYRLNQAQLSKAMFPLGEIRKTE 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA + GL A K DS ICF+ + + + ++R GD+V G+ +GRH G+ Sbjct: 176 VRQLAEQAGLPTAAKKDSTGICFIGERPFREFLQRYLP--TQPGDMVTPEGKTVGRHEGL 233 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + YT+GQR+GL + GEP FV D +R+IV L + + + +++W Sbjct: 234 MYYTLGQRKGLNIGGAKDGSGEPWFVAGKDIPGNRLIVVQGHDHPLLLKNTLEMGDLSWT 293 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTS 370 D K R + D + F + V GQ+ V Y Sbjct: 294 LDEAPLPG-----DYAAKNRYRMADAACSLSPVVDGEANLTFRDKQWAVTPGQSAVLYDG 348 Query: 371 DSNEARVLGGGII 383 D LGGGII Sbjct: 349 DI----CLGGGII 357 >gi|322515062|ref|ZP_08068070.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus ureae ATCC 25976] gi|322118942|gb|EFX91119.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus ureae ATCC 25976] Length = 389 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 124/391 (31%), Positives = 210/391 (53%), Gaps = 29/391 (7%) Query: 4 SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63 + +L + L +N K +V++ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 14 THFAKLTAEQLAENAK-KKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD- 71 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 C A D+ DA+ V D + + + ++ + + V F + Y AG TP P + CN+ Sbjct: 72 --YCTAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEHFLNEYKAGRTPNPDILCNKE 129 Query: 124 VKFSDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 +KF L + LGAD +ATGHY+R GDD + + +D +DQSYFL+ + Sbjct: 130 IKFKAFLEYAAKDLGADYIATGHYVRR---SGDDNNAQ--LLCGLDANKDQSYFLYTLSH 184 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 +Q+ FP+GD+ K VR +A ++GL A K DS ICF+ + K+ D + R A Sbjct: 185 KQVGQSLFPVGDIGKPIVRQIAEDLGLATAKKKDSTGICFIGERKFKDFLARYLP--AQP 242 Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES 297 G+I ++G+++GRH+G++ +T+GQR+GLG+ +P +VV D ++ ++V Sbjct: 243 GEIRTVDGKVVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLVVAQGHD 302 Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFE 353 L + +++W+ + + +C VK R Q + +Q +DD + V F+ Sbjct: 303 NSALLSSGLIATQLHWVD----RQPIRENVRCTVKTRYRQTDIACEIQPMDDDTIRVIFD 358 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + ++ V GQ+ VFY + LGGG+I Sbjct: 359 EPQIAVTPGQSAVFYQGEV----CLGGGVIE 385 >gi|317402803|gb|EFV83347.1| tRNA-specific 2-thiouridylase mnmA [Achromobacter xylosoxidans C54] Length = 372 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 124/383 (32%), Positives = 178/383 (46%), Gaps = 28/383 (7%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 + K RVVV MSGGVDSSV A LLK+ GY+V+G+ ++ + S+ C QD+ Sbjct: 3 QTSTKKGRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQDLL 59 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA V D + V ++ +++ V F Y+AG TP P V CN +KF L Sbjct: 60 DAASVADLVGVEFEYVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAM 119 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGA+ +ATGHY R R + G R + + +D +DQSYFL Q QL FPLG+ Sbjct: 120 ALGAEHIATGHYARVREVAAEGGGSRFELLKALDGSKDQSYFLHRLNQAQLSRTLFPLGE 179 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 + K VR +A E+GL A K DS ICF+ + + + + R G I+ GQ +G Sbjct: 180 IHKTEVRRIAHEIGLHNAAKKDSTGICFIGERPFREFLNRYLP--TEPGPILTPEGQKVG 237 Query: 255 RHNGIINYTIGQR----------RGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVH 301 RH G+ YT+GQR R E +V D + + V L Sbjct: 238 RHEGLSFYTLGQRKGLGVGGVKGRQRDDGTAEAWYVARKDLERNVLYVVQGHDHPWLLSG 297 Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVA 360 + ++++W+ + K R Q + +G +DF + + V Sbjct: 298 SLRAQDVSWVAGQAPAAG-----EYGAKTRYRQADAACRLGDATTEGFTLDFAEPQWAVT 352 Query: 361 SGQACVFYTSDSNEARVLGGGII 383 GQ+ V Y D LGGGII Sbjct: 353 PGQSAVLYDGDI----CLGGGII 371 >gi|229586563|ref|YP_002845064.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia africae ESF-5] gi|259495837|sp|C3PN11|MNMA_RICAE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|228021613|gb|ACP53321.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia africae ESF-5] Length = 365 Score = 464 bits (1194), Expect = e-128, Method: Composition-based stats. Identities = 185/371 (49%), Positives = 243/371 (65%), Gaps = 13/371 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +VVAMSGGVDSS VAA+L G++VIG+TLQLY+ A +K +CCAGQD+YDA+ Sbjct: 7 KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 66 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + HYV DYE +F+ +VI F SY GETPLPCV CN++VKF DL+ R+LGA Sbjct: 67 VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 126 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY+R GD+G + +D +DQSYFLF TT++QL LRFPLG + K+ Sbjct: 127 DKLATGHYVRK--INGDNGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGLTKD 181 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R LA + GL++ADK DSQDICF+ G Y V+ +I + G I+H+NG LG H+G Sbjct: 182 ETRKLASKFGLEVADKPDSQDICFIPDGNYKSVINKIRPNSSESGKIIHVNGFELGEHSG 241 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 IINYTIGQRRGLG+A EPL+VV +D + V VGP +L V +R++NWL D + ++ Sbjct: 242 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNVVYVGPESALNVQEFIIRDVNWLADEIKDN 301 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + VKIRS++ P + + DD + V F E VA GQACV Y ARV Sbjct: 302 ---EKLEVAVKIRSTRPPRLAEISKFGDDKMKVKFLCEEKAVAPGQACVIYAG----ARV 354 Query: 378 LGGGIISGSKR 388 LGGG I+ R Sbjct: 355 LGGGWITREIR 365 >gi|218133009|ref|ZP_03461813.1| hypothetical protein BACPEC_00870 [Bacteroides pectinophilus ATCC 43243] gi|217991882|gb|EEC57886.1| hypothetical protein BACPEC_00870 [Bacteroides pectinophilus ATCC 43243] Length = 375 Score = 463 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 140/370 (37%), Positives = 205/370 (55%), Gaps = 20/370 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRV 79 RVVV MSGGVDSSV A LLK GYDVIGVT+Q++ + + G CC V DARRV Sbjct: 16 RVVVGMSGGVDSSVAACLLKEQGYDVIGVTMQIWQDEDSCSMEENGGCCGWSAVEDARRV 75 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +++ +YV +++ FR VI F + Y G TP PC+ CNR VK+ LL + ++GAD Sbjct: 76 AQQLDIPYYVMNFKNEFRENVIEYFVNEYKNGRTPNPCIACNRYVKWESLLKRSMEIGAD 135 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R ++ + +DQ+Y L+ TQ+QL P+G+ KE Sbjct: 136 YIATGHYARIEQLS----NGRYVVRNSVTAAKDQTYALYNLTQEQLRHTLMPIGEYDKEH 191 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-----LEGDIVHLNGQILG 254 +R +A + GL +A+K DSQDICFV G Y + + + + G+ V+L G+++G Sbjct: 192 IRQIAAQRGLMVANKPDSQDICFVPDGDYAGFIMNSDYAQSCSKACVPGNFVNLAGEVIG 251 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 RH G ++YTIGQR+GLG+AMG P+FVV + ++ V++G R+ +N++ Sbjct: 252 RHKGYLHYTIGQRKGLGLAMGHPVFVVDIRPETNEVVIGDNSDCFSDRLVADRLNFMAV- 310 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 D + + +IR S V+ +DD + F++ + V GQA V Y Sbjct: 311 ---DRLTEPKHLMARIRYSHKGGECTVRMIDDDRIECVFDEPQRAVTKGQAVVLYED--- 364 Query: 374 EARVLGGGII 383 V GGG I Sbjct: 365 -GHVFGGGTI 373 >gi|83953541|ref|ZP_00962262.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfitobacter sp. NAS-14.1] gi|83841486|gb|EAP80655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfitobacter sp. NAS-14.1] Length = 380 Score = 463 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 188/386 (48%), Positives = 250/386 (64%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + LNSL K P D RVVVAMSGGVDSSVVAA+L +GYDV+GVTLQLY+ A Sbjct: 1 MPLDRTPPLNSLGFAKAPADTRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 RKG+CCAG D++DARRV +++ HYV DYE F++AVI FA SY G TP+PC+ C Sbjct: 61 LARKGACCAGIDIHDARRVAESMGFPHYVLDYENVFKDAVIDEFADSYLGGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL + L AD +ATGHYI+ ++ G DG + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETAKDLDADCMATGHYIQRKM--GLDGAE---LHCAADANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K R LA + GL +ADK DSQDICFV G Y V++++ Sbjct: 176 TPEQLDYLRFPLGHLPSKNDTRALAAKYGLSVADKPDSQDICFVPNGDYASVIRKLRPEA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IV +G +L +H+G+INYTIGQRRGLG+ + +PL+VV LD ++++V+VGP+ L Sbjct: 236 ANPGNIVDTDGNVLAQHDGVINYTIGQRRGLGIGGLADPLYVVKLDADNAQVVVGPKSML 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + ++EINWLGD + V++RS++ P ++ +D V+ E Sbjct: 296 ATRTVPVKEINWLGDTPL--MSQSEWPIAVRVRSTRPPTDAILRPISDTEATVELLTPEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 G++ GQACVFY +S R+ GGG I Sbjct: 354 GISPGQACVFYDPES--TRIFGGGWI 377 >gi|291535108|emb|CBL08220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseburia intestinalis M50/1] Length = 359 Score = 463 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 134/367 (36%), Positives = 199/367 (54%), Gaps = 16/367 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARR 78 +VVV MSGGVDSSV A LLK GYDVIGVT+Q++ + G CC V DARR Sbjct: 4 KKVVVGMSGGVDSSVAAYLLKEQGYDVIGVTMQIWQDEDEFVQEESGGCCGLSAVDDARR 63 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + +YV ++++ F+ V+ F + Y G TP PC+ CNR VK+ LL+ + +GA Sbjct: 64 VADRLGIPYYVMNFKQEFKKNVMDYFTAEYLKGRTPNPCIACNRYVKWEALLNRSLAIGA 123 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R + + +DQ+Y L+ TQ+QL P+G K+ Sbjct: 124 DYIATGHYARIEQLS----NGRYAIKNSVTAAKDQTYALYNLTQEQLSHTLMPVGAYHKD 179 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI-NAGIALEGDIVHLNGQILGRHN 257 +R +A E+GL +A K DSQ+ICF+ Y + R + G+ V +G ++G+H Sbjct: 180 EIRKIAEEIGLMVAHKKDSQEICFISDNDYAGFIDRECGDQVPPPGNFVLTDGTVVGKHK 239 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI +YTIGQR+GLG+A G P+FV + ++ V++G + + + IN++ + Sbjct: 240 GITHYTIGQRKGLGIAFGHPVFVTEIRPETNEVVLGENRDVFTYELDADHINFMSIPDIQ 299 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 D ++ KIR S V R +D ++ +F + V GQA V Y + Sbjct: 300 DEML----LKAKIRYSHSGSMCKVTRTGEDTIHCEFLEPVRAVTPGQAVVLYDGE----Y 351 Query: 377 VLGGGII 383 V GGG I Sbjct: 352 VAGGGTI 358 >gi|225388352|ref|ZP_03758076.1| hypothetical protein CLOSTASPAR_02087 [Clostridium asparagiforme DSM 15981] gi|225045595|gb|EEG55841.1| hypothetical protein CLOSTASPAR_02087 [Clostridium asparagiforme DSM 15981] Length = 361 Score = 463 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 140/368 (38%), Positives = 203/368 (55%), Gaps = 14/368 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDA 76 + VVV MSGGVDSSV A LLK+ GY VIGVT+Q++ + +G CC V DA Sbjct: 4 EKKTVVVGMSGGVDSSVAAYLLKQQGYRVIGVTMQIWQDEDGDVQEEQGGCCGLSAVDDA 63 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV + + +YV ++++ FR V+ FA Y G TP PC+ CNR VK+ LL + + Sbjct: 64 RRVAMQLEIPYYVMNFKQEFREHVMDYFAGEYLEGRTPNPCIACNRYVKWESLLRRSIAI 123 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R R + R + +DQ+Y L+ TQ+QL P+G Sbjct: 124 GADYIATGHYARIERL----ENGRFALRRSVTEAKDQTYALYNLTQEQLSRTLMPVGSYH 179 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ +R +A E+GL++A K DSQ+ICFV Y ++ EG+ V L+G +LGRH Sbjct: 180 KDEIRRMAEEIGLNVAHKPDSQEICFVPDKDYASFIEDYTGKSCPEGNFVDLHGNVLGRH 239 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GI +YT+GQR+GL ++MG P+FVV + +++ V++G E + + + ++NW+ Sbjct: 240 KGISHYTVGQRKGLNLSMGRPVFVVEIRPDTNEVVIGEGEDVFTNILRCSKLNWMAVDGL 299 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + KIR S + + +D V F++ V GQA VFYT D Sbjct: 300 HG---GRLRVDAKIRYSHRGAACTIREIGEDLVECVFDEPVRAVTPGQAVVFYTGD---- 352 Query: 376 RVLGGGII 383 V GGG I Sbjct: 353 YVAGGGTI 360 >gi|194290687|ref|YP_002006594.1| tRNA-specific 2-thiouridylase mnma [Cupriavidus taiwanensis LMG 19424] gi|229486340|sp|B3R6Q0|MNMA_CUPTR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|193224522|emb|CAQ70533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cupriavidus taiwanensis LMG 19424] Length = 361 Score = 463 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 124/372 (33%), Positives = 178/372 (47%), Gaps = 26/372 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ + S+ C QD D V Sbjct: 6 KRVVVGMSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSE---YCSTRQDWLDVVSVA 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I V ++ +++ V F Y+AG TP P V CN +KF L LGA+ Sbjct: 63 DLIGVDVEAVNFAAEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAET 122 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R + R + + +D +DQSYFL Q QL FPLG++ K V Sbjct: 123 IATGHYARVRQ----NAAGRFELLKALDHTKDQSYFLHRLNQAQLSRTLFPLGEIPKTRV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A E+GL A K DS ICF+ + + D + R G + G+++G H G+ Sbjct: 179 REIAAEIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPEGKVVGEHIGLA 236 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YT+GQR+G+G+ G+ +V D ++ + V L + +++W+ Sbjct: 237 FYTLGQRKGIGLGGSRDGNGDAWYVARKDMANNTLYVVQGHDHPWLLTPVLNASDLSWVA 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSD 371 K R Q VQ D D + + F + + V GQ+ V Y D Sbjct: 297 GEPPAAGAAMAA----KTRYRQSDAACTVQAVDADALSLGFAEPQWAVTPGQSAVLYDGD 352 Query: 372 SNEARVLGGGII 383 LGGGII Sbjct: 353 I----CLGGGII 360 >gi|99081242|ref|YP_613396.1| tRNA-specific 2-thiouridylase MnmA [Ruegeria sp. TM1040] gi|123077645|sp|Q1GGT2|MNMA_SILST RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|99037522|gb|ABF64134.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ruegeria sp. TM1040] Length = 381 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 194/386 (50%), Positives = 256/386 (66%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + +NSL K+P + RVVVAMSGGVDSSVVAA L GYDV+GVTLQLY+ A Sbjct: 1 MALDNEAPVNSLGFAKSPAETRVVVAMSGGVDSSVVAAYLADQGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D++DARRV + HYV DYE F++AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGIDIHDARRVAEERGFPHYVLDYENIFKDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL + L AD +ATGHYI+ ++ G+ + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETAKDLEADCMATGHYIQRKM-----GEHGPELHSAEDANRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG + K++ R++A + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 TPEQLDFLRFPLGHLPSKDATREMAAQYGLSVADKPDSQDICFVPNGDYASVIQKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G IVH +G++LG HNG+I+YTIGQRRGLG+ + EPL+VV LD + +VIVGP+E L Sbjct: 236 AEPGQIVHADGRVLGEHNGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDQKQVIVGPKEML 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 R+ +REINWLGD F D + VK+RS++ P ++ ++ V+ +E Sbjct: 296 ATRRVPVREINWLGDAPFTSR--DEWHLSVKVRSTRPPRDAIIRPISETEAEVELFSAEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 G++ GQACVFY D N +R+ GGG I Sbjct: 354 GISPGQACVFY--DPNGSRIYGGGWI 377 >gi|315497620|ref|YP_004086424.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Asticcacaulis excentricus CB 48] gi|315415632|gb|ADU12273.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Asticcacaulis excentricus CB 48] Length = 402 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 201/371 (54%), Positives = 257/371 (69%), Gaps = 7/371 (1%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + RVV AMSGGVDSSV AALL GY+VIGVTLQLY+ +A K+ G+CCAGQD++DAR Sbjct: 33 QGARVVAAMSGGVDSSVAAALLHAAGYEVIGVTLQLYDHGQALKKTGACCAGQDIHDARV 92 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + I ++HYV DYE RF+++VI FA SY GETP+PC+ CN+TVKF DLL V R LGA Sbjct: 93 AAEKIGIAHYVLDYESRFKDSVIEEFADSYLRGETPVPCIRCNQTVKFRDLLDVARDLGA 152 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY+ R D R + R +D RDQSYFLFATT++QL LRFPL D+ K Sbjct: 153 EAMATGHYVERR-----DTGNRAELRRAIDRNRDQSYFLFATTREQLDFLRFPLADIPKP 207 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VRD+AR+MGL++A K DSQDICFV +GKY ++ R+ GDIVHL+G++LG+H G Sbjct: 208 QVRDIARQMGLNVAAKPDSQDICFVPEGKYTTLIDRLRPQGREAGDIVHLDGRVLGKHQG 267 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD-GLFE 317 I YTIGQRRGL +A+GEPLFV+ LD + RVIVGPRE+L + ++E NWLGD E Sbjct: 268 ITGYTIGQRRGLNIAVGEPLFVIKLDAETRRVIVGPREALNTAALVMKETNWLGDHETLE 327 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 A ++RS++ PVP + + V V F+ SE GVA GQACV Y ++E RV Sbjct: 328 SAAAAHLPVLARVRSTRPPVPARLNLREGQVEVVFDASEEGVAPGQACVLYDP-ADEDRV 386 Query: 378 LGGGIISGSKR 388 LGGG I ++ Sbjct: 387 LGGGFIERTRP 397 >gi|331002457|ref|ZP_08325975.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae oral taxon 107 str. F0167] gi|330410273|gb|EGG89707.1| tRNA-specific 2-thiouridylase mnmA [Lachnospiraceae oral taxon 107 str. F0167] Length = 363 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 140/368 (38%), Positives = 202/368 (54%), Gaps = 14/368 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDA 76 + +VVV MSGGVDSSV A LLK GYDV GVT+Q++ S GS CC V DA Sbjct: 2 EKKKVVVGMSGGVDSSVAAYLLKEAGYDVTGVTMQIWQSEDEEDMSGSGGCCGLSAVDDA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV I + +YV ++ + F++ VI F + Y TP PC+ CNR VK+ LL + L Sbjct: 62 RRVARDIGIPYYVMNFRDEFKDKVIDYFVNEYVQARTPNPCIACNRYVKWESLLERSMML 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY R R + +DQ+Y L+ TQ QL P+GD + Sbjct: 122 GADYIATGHYARIEKL----ENGRFALRMSKTSAKDQTYALYNLTQDQLSKTLMPVGDYE 177 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ +R++A++ L +A+K DSQ+ICFV Y V+ G+ V +G+ILG+H Sbjct: 178 KDEIREIAKKFNLRVANKPDSQEICFVSDNDYASFVESEIGKKMPVGNFVTADGEILGKH 237 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GI++YTIGQR+GLG+A+G P+FV + +++ V++G E + + + +N + F Sbjct: 238 KGILHYTIGQRKGLGIALGHPIFVTEIRPDTNEVVIGENEDVFGYSLEANNLNAMAVESF 297 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 DG + KIR S ++ +D + +DF+K + GQA V Y Sbjct: 298 ----FDGMRAVGKIRYSHKGEHCTIKVLGEDRIRIDFDKKVRAITPGQAVVLYD---ESG 350 Query: 376 RVLGGGII 383 VLGGG I Sbjct: 351 LVLGGGTI 358 >gi|262368696|ref|ZP_06062025.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter johnsonii SH046] gi|262316374|gb|EEY97412.1| tRNA-specific 2-thiouridylase mnmA [Acinetobacter johnsonii SH046] Length = 377 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 122/379 (32%), Positives = 200/379 (52%), Gaps = 23/379 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RV+V MSGGVDSSV AALL + GY V G+ ++ + ++ C A +D+ DA+ V Sbjct: 2 QQRVIVGMSGGVDSSVSAALLLQQGYQVEGLFMKNWEEDDGTE---YCTAMEDLADAQAV 58 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + + + ++ + + V F + YAAG TP P + CN+ +KF L QLGAD Sbjct: 59 CDKLGIKLHTANFAMEYWDRVFEHFLAEYAAGRTPNPDILCNKEIKFRAFLDHAMQLGAD 118 Query: 140 VLATGHYIRS-RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R G+ + R +D +DQ+YFL A +++ FP+G+++K Sbjct: 119 FIATGHYARRGETMTNSKGEEYAPLLRGLDKNKDQTYFLHAVHGREINKTLFPVGEIEKP 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A + L A K DS ICF+ + ++ D +K+ A G IV +G+ +G H+G Sbjct: 179 EVRKIAEQYDLVTAKKKDSTGICFIGERRFNDFLKQYLP--AQAGKIVLDDGKEVGEHHG 236 Query: 259 IINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 ++ YT+GQR G+G+ FV++ D ++R+++G ++ ++ I+W Sbjct: 237 LMYYTLGQRGGIGIGGLKGVAEGAWFVLHKDIENNRLVIGQGHEHPLMQSTTLWSETIDW 296 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVASGQACVF 367 + + GF+C + R QD + GV V+F++ + V GQ+ VF Sbjct: 297 VAGEM--QIPETGFRCTSRTRYRQDDQDCVIFNDPTTPGGVRVEFDEPQRAVTPGQSVVF 354 Query: 368 YTSDSNEARVLGGGIISGS 386 Y+ + LGGG+I + Sbjct: 355 YSGEV----CLGGGVIHHT 369 >gi|145589976|ref|YP_001156573.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|205816900|sp|A4SZU5|MNMA_POLSQ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|145048382|gb|ABP35009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 370 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 121/375 (32%), Positives = 179/375 (47%), Gaps = 29/375 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+ MSGGVDSSV A +LK G++VIG+ ++ + + C A QD D V Sbjct: 15 KKVVIGMSGGVDSSVAAWMLKEQGFEVIGLFMKNWEDDDNDE---YCSARQDWLDVVSVA 71 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + ++ +R V F YAAG TP P V CN +KF L LGAD Sbjct: 72 DMIGIDVEAVNFAAEYRERVFADFLCEYAAGRTPNPDVLCNAEIKFKAFLDHAMSLGADA 131 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R G R + + +D +DQSYFL TQQQL + FPLG++ K V Sbjct: 132 IATGHYARVRHEGG-----RVQLLKAVDASKDQSYFLHRLTQQQLSKVMFPLGEIPKTEV 186 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A ++GL A K DS ICF+ + + + + R + G I G+ +G H G+ Sbjct: 187 RKIAEQIGLHNAKKKDSTGICFIGERPFREFLNRYLPRV--PGPIKTPEGKTVGEHMGLA 244 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +T+GQR+G+G+ G+ +V D ++ + V L +++ + +W+ Sbjct: 245 FFTLGQRKGIGLGGSQDGNGDAWYVARKDMANNTLYVAQGHEHPWLLANKLSAVDASWVS 304 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVF--VQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 E K R Q + + + F +++ V GQ+ V Y Sbjct: 305 GAAPEPG-----SYSAKTRYRQTDSACTYIADIDTNNFSLSFPEAQWAVTPGQSAVLYDG 359 Query: 371 DSNEARVLGGGIISG 385 D LGGGIIS Sbjct: 360 DI----CLGGGIIST 370 >gi|254429373|ref|ZP_05043080.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alcanivorax sp. DG881] gi|196195542|gb|EDX90501.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alcanivorax sp. DG881] Length = 364 Score = 463 bits (1192), Expect = e-128, Method: Composition-based stats. Identities = 120/382 (31%), Positives = 187/382 (48%), Gaps = 28/382 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K PKD RV+V MSGGVDSSV AA L GY V G+ ++ +N + C A +D+ Sbjct: 1 MRKAPKDTRVIVGMSGGVDSSVAAARLIDAGYQVEGLFMKNWNEDDGTD---YCTAREDL 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA +V + + + ++ E++ + V F + Y AG TP P + CN+ +KF L Sbjct: 58 LDAMQVAGVLGIELHTANFAEQYWDRVFAHFLAEYKAGRTPNPDILCNKEIKFQAFLDHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + + R +D +DQ+YFL A Q+ FPLG Sbjct: 118 ITLGADYIATGHYSQVSH------GDKAQLLRAVDTNKDQTYFLHAVDYQKFDRTLFPLG 171 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 D++K VR +A E G D K DS ICF+ + ++ D +++ A G I +G ++ Sbjct: 172 DLEKPEVRRIAEEKGFDNHKKKDSTGICFIGERRFKDFLEQYLP--AQPGTIEDDHGNVI 229 Query: 254 GRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 G+ +G++ YT+GQR+GLG+ P +V D + + +I L + Sbjct: 230 GKQDGLMYYTLGQRQGLGIGGLASASEAPWYVAGKDLDRNVLIAVQGTDHPLLYSRELTS 289 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364 + W+ +A + K R Q V +G V+V F++ + V GQ+ Sbjct: 290 APMQWVAL----EAPALPARLTAKTRYRQPDQACTVSDAGNGRVHVIFDQPQRAVTPGQS 345 Query: 365 CVFYTSDSNEARVLGGGIISGS 386 VFY LGG +I + Sbjct: 346 VVFYDG----PVCLGGAVIEET 363 >gi|312116059|ref|YP_004013655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodomicrobium vannielii ATCC 17100] gi|311221188|gb|ADP72556.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodomicrobium vannielii ATCC 17100] Length = 395 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 204/375 (54%), Positives = 257/375 (68%), Gaps = 5/375 (1%) Query: 11 SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70 +L L +P R+VVAMSGGVDSS+ AAL+KR GYD +G+TLQLY+ +A RKG+CCAG Sbjct: 23 ALGLTGSPSSHRIVVAMSGGVDSSLTAALVKRAGYDTVGITLQLYDHGEAMARKGACCAG 82 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 QD+ DAR V D + V HYV DYE+RFR +VI FA SY AGETP+PCV CN+TVKF DLL Sbjct: 83 QDIMDARGVADRLGVPHYVLDYEDRFRQSVIDDFADSYLAGETPVPCVRCNQTVKFRDLL 142 Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 R+LGA L TGHY+RS G R M + D +RDQSYFLFATTQ QL LRF Sbjct: 143 GAARELGASALVTGHYVRSVP-----GPRGIEMHQAADPDRDQSYFLFATTQAQLDFLRF 197 Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250 PLG M K R++A + L +A K DSQDICFV G Y +++++ G+IVH +G Sbjct: 198 PLGGMTKTETREMAAALHLPVASKPDSQDICFVPSGDYASIIRKLRPESGEPGEIVHADG 257 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 ++LG+H GIIN+T+GQR+GLG+A GEPLFV+ ++ ++ RVIVGPRE L R+ LR++NW Sbjct: 258 RVLGQHPGIINFTVGQRKGLGIATGEPLFVIRIEPSARRVIVGPREMLRTARLSLRDVNW 317 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 +G G ++AV G FVK+RS+Q P + GV VD E GVA+GQACVFY Sbjct: 318 IGGGSLDEAVAGGRSLFVKVRSTQPPREARLFAERGGVGVDLAGGEFGVAAGQACVFYDR 377 Query: 371 DSNEARVLGGGIISG 385 ARVLGGG I Sbjct: 378 AGGAARVLGGGFIER 392 >gi|77165505|ref|YP_344030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosococcus oceani ATCC 19707] gi|76883819|gb|ABA58500.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosococcus oceani ATCC 19707] Length = 391 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 116/386 (30%), Positives = 182/386 (47%), Gaps = 28/386 (7%) Query: 11 SLDLDKNPKDM-RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69 S +N + +VVV +SGGVDSSV A L++ GY G+ ++ + C Sbjct: 17 SRRFPRNQMNKPKVVVGLSGGVDSSVAALRLQQQGYPTSGLFMKNWVDFADESE---CTV 73 Query: 70 GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 QD DA+ V + +S + ++ + + V F Y G TP P + CNR +KF Sbjct: 74 AQDREDAQAVTSLLGISFHEANFAMEYWDRVFHYFLEEYRLGRTPNPDILCNREIKFKTF 133 Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 L LG ++ATGHY R D + R + + D +DQSYFL+ Q+QL Sbjct: 134 LDHALALGNTLIATGHYARI-----DQKEGRYRLLKGRDKNKDQSYFLYTLGQKQLSHTL 188 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 FPLG+++K VR +A + L K DS ICF+ + ++ + + R A G++ + Sbjct: 189 FPLGELEKPQVRRIAIQARLPNHSKKDSTGICFIGERRFKEFLSRYLP--AQPGEMRTPD 246 Query: 250 GQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVH 301 + +G+H+G++ YT+GQRRGLG+ G P FVV + + + V L+ Sbjct: 247 KEWIGQHDGLMYYTLGQRRGLGIGGRKNSNGAPWFVVGKNLPQNTLYVAQGRHHPWLKSL 306 Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVA 360 + +++W+ + C KIR Q + +G + V F + Sbjct: 307 ILEANQLHWVAGH----PPPLPYSCTAKIRYRQTDQHCTLTAIANGYIKVIFNAPQYAAT 362 Query: 361 SGQACVFYTSDSNEARVLGGGIISGS 386 GQA VFY D LGGG I+ + Sbjct: 363 PGQAIVFYQDD----ECLGGGTITTT 384 >gi|157828286|ref|YP_001494528.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia rickettsii str. 'Sheila Smith'] gi|166235079|sp|A8GRJ5|MNMA_RICRS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205822057|sp|B0BWZ7|MNMA_RICRO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|157800767|gb|ABV76020.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia rickettsii str. 'Sheila Smith'] Length = 365 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 185/371 (49%), Positives = 242/371 (65%), Gaps = 13/371 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +VVAMSGGVDSS VAA+L G++VIG+TLQLY+ A +K +CCAGQD+YDA+ Sbjct: 7 KQSTIVVAMSGGVDSSAVAAMLNEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 66 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + HYV DYE +F+ +VI F SY GETPLPCV CN++VKF DL+ R+LGA Sbjct: 67 VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 126 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY+R GD+G + +D +DQSYFLF TT++QL LRFPLG + K Sbjct: 127 DKLATGHYVRK--INGDNGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGLTKG 181 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R LA + GL++ADK DSQDICF+ G Y V+ +I + G I+H+NG LG H+G Sbjct: 182 ETRKLASKFGLEVADKPDSQDICFIPDGNYKSVINKIRPNSSESGKIIHVNGFELGEHSG 241 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 IINYTIGQRRGLG+A EPL+VV +D + V VGP +L V +R++NWL D + ++ Sbjct: 242 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDN 301 Query: 319 AVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + VKIRS++ P + + DD + V F E VA GQACV Y ARV Sbjct: 302 ---EKLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCKEKAVAPGQACVIYAG----ARV 354 Query: 378 LGGGIISGSKR 388 LGGG I+ R Sbjct: 355 LGGGWITREIR 365 >gi|114569244|ref|YP_755924.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Maricaulis maris MCS10] gi|122316614|sp|Q0ARV1|MNMA_MARMM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|114339706|gb|ABI64986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Maricaulis maris MCS10] Length = 405 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 209/374 (55%), Positives = 264/374 (70%), Gaps = 10/374 (2%) Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69 + L L NP D RVVVAMSGGVDSSV AALL GYDV+GVTLQLY+ A +KG+CCA Sbjct: 25 DPLGLGGNPGDHRVVVAMSGGVDSSVTAALLHHLGYDVVGVTLQLYDHGAAMAKKGACCA 84 Query: 70 GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 GQD+YDA+RV + HYV DYE RFR AVI FA +Y AG TP+PCV CN+TVKF+DL Sbjct: 85 GQDIYDAKRVAEACGFRHYVLDYESRFREAVIEEFADTYLAGFTPIPCVRCNQTVKFADL 144 Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 L+ RQLGA +ATGHYI+ DG + R D +DQSYFLFATT QL LR Sbjct: 145 LTTARQLGAVCMATGHYIQRV-----DGPNGAELRRAADAGKDQSYFLFATTHDQLDFLR 199 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 FPLG + K+ R+LA GL +ADK DSQDICFV G+Y D+V+++ G + G+IVH++ Sbjct: 200 FPLGHLNKDQTRELAEAFGLIVADKPDSQDICFVPNGRYVDIVEKVRPGASRPGEIVHVD 259 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 G++LG H G+I YT+GQRRGL +A+G+PL+VV LD + V+VGPRE+LE+ I L++IN Sbjct: 260 GRVLGTHEGVIRYTVGQRRGLKIAVGDPLYVVRLDAAKAEVVVGPREALEIDTIALKDIN 319 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 WLGD +A +DG VK+RS++ PVP + + D + V + E GVA GQACVFY+ Sbjct: 320 WLGD----EAPLDGAPVRVKVRSTRPPVPAALSVDGDDIRVVLARGEEGVAPGQACVFYS 375 Query: 370 SDSNEARVLGGGII 383 SD +E RVLGGG I Sbjct: 376 SD-DEDRVLGGGWI 388 >gi|153953713|ref|YP_001394478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium kluyveri DSM 555] gi|219854333|ref|YP_002471455.1| hypothetical protein CKR_0990 [Clostridium kluyveri NBRC 12016] gi|205813712|sp|A5N749|MNMA_CLOK5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|146346594|gb|EDK33130.1| TrmU [Clostridium kluyveri DSM 555] gi|219568057|dbj|BAH06041.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 356 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 132/367 (35%), Positives = 202/367 (55%), Gaps = 15/367 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GY+VIGVT+Q++ + CC+ V DA+ V Sbjct: 3 KKVVVGMSGGVDSSVAAHLLKEQGYEVIGVTMQVWQEDDYYEDMESGCCSLSAVEDAKMV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +N+ HYV +++E F+ VI F Y G+TP PC+ CN+ +KF +LL LGAD Sbjct: 63 AYHLNIPHYVMNFKEAFKKNVIDYFIQEYMEGKTPNPCIACNKYIKFDELLKRAMDLGAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + + D +DQ+Y L+ TQ QL P G KKE Sbjct: 123 YVATGHYATVEKIND-----RYTLRKSKDHNKDQTYALYNLTQFQLAHTLMPCGIYKKEE 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R++ARE+GL + K DS++ICF+ + +KRI EG+ + G +LG+H GI Sbjct: 178 IREIAREIGLMVHSKRDSEEICFIPDNDHGAYIKRITKDKVKEGNFIDKEGNVLGKHKGI 237 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 + YT+GQR+GLG++ G P +V+ + ++ V++G E + + +++N+L + Sbjct: 238 VYYTLGQRKGLGLSFGVPTYVIDIKPYTNEVVLGSEEDIFKTDLVAKDVNFL----PFEN 293 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + K KIR S P + +++ + V F + + GQ+ VFY + ++ Sbjct: 294 LTSPMKVEAKIRYSSKPAEATISCLDEERIKVKFTDRQRAITKGQSVVFYKDNI----LI 349 Query: 379 GGGIISG 385 GGGII Sbjct: 350 GGGIIDS 356 >gi|254434432|ref|ZP_05047940.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosococcus oceani AFC27] gi|205822273|sp|Q3J9J6|MNMA_NITOC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|207090765|gb|EDZ68036.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosococcus oceani AFC27] Length = 367 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 114/376 (30%), Positives = 178/376 (47%), Gaps = 27/376 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +VVV +SGGVDSSV A L++ GY G+ ++ + C QD DA+ V Sbjct: 3 KPKVVVGLSGGVDSSVAALRLQQQGYPTSGLFMKNWVDFADESE---CTVAQDREDAQAV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + +S + ++ + + V F Y G TP P + CNR +KF L LG Sbjct: 60 TSLLGISFHEANFAMEYWDRVFHYFLEEYRLGRTPNPDILCNREIKFKTFLDHALALGNT 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ATGHY R D + R + + D +DQSYFL+ Q+QL FPLG+++K Sbjct: 120 LIATGHYARI-----DQKEGRYRLLKGRDKNKDQSYFLYTLGQKQLSHTLFPLGELEKPQ 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A + L K DS ICF+ + ++ + + R A G++ + + +G+H+G+ Sbjct: 175 VRRIAIQARLPNHSKKDSTGICFIGERRFKEFLSRYLP--AQPGEMRTPDKEWIGQHDGL 232 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWL 311 + YT+GQRRGLG+ G P FVV + + + V L+ + +++W+ Sbjct: 233 MYYTLGQRRGLGIGGRKNSNGAPWFVVGKNLPQNTLYVAQGRHHPWLKSLILEANQLHWV 292 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 + C KIR Q + +G + V F + GQA VFY Sbjct: 293 AGH----PPPLPYSCTAKIRYRQTDQHCTLTAIANGYIKVIFNAPQYAATPGQAIVFYQD 348 Query: 371 DSNEARVLGGGIISGS 386 D LGGG I+ + Sbjct: 349 D----ECLGGGTITTT 360 >gi|83951896|ref|ZP_00960628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseovarius nubinhibens ISM] gi|83836902|gb|EAP76199.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseovarius nubinhibens ISM] Length = 380 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 192/379 (50%), Positives = 254/379 (67%), Gaps = 12/379 (3%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 LNSL L K P + RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A +KG+C Sbjct: 6 PLNSLGLPKPPSETRVVVAMSGGVDSSVVAAQLAEEGYDVVGVTLQLYDHGAALAKKGAC 65 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 CAG D++DARRV + + HYV DYE F++AVI FA SY AG TP+PC+ CN VKF Sbjct: 66 CAGIDIHDARRVAEEMGFPHYVLDYENIFQDAVIDEFADSYLAGATPVPCIRCNERVKFK 125 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL R L AD +ATGHYI+ + G+ + D RDQSYFLF+TT +QL Sbjct: 126 DLLQTARDLDADCMATGHYIQRK-----QGQNGPELHCATDANRDQSYFLFSTTPEQLEF 180 Query: 188 LRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 LRFPLG + K++ R+LA + GL +ADK DSQDICFV G Y V++++ G A G+IV Sbjct: 181 LRFPLGHLPSKDATRELAAKYGLSVADKPDSQDICFVPNGNYAAVIEKLRPGAAEPGEIV 240 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 H +G++LG HNG+I+YTIGQRRGLG+ + +PL+VV LD + V+VGP+E L + + Sbjct: 241 HADGRVLGTHNGVIHYTIGQRRGLGIGGLSDPLYVVKLDVDKKHVVVGPKEMLSTRNVPV 300 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQA 364 REINWLGD F+ ++ VK+RS++ P ++ + V+ E G++ GQA Sbjct: 301 REINWLGDEPFDSRA--EWQVSVKVRSTRPPREAVIRPLSPTTAEVELLSPEDGISPGQA 358 Query: 365 CVFYTSDSNEARVLGGGII 383 CVFY ++ +R+LGGG I Sbjct: 359 CVFY--ETEGSRILGGGWI 375 >gi|302670955|ref|YP_003830915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU [Butyrivibrio proteoclasticus B316] gi|302395428|gb|ADL34333.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU [Butyrivibrio proteoclasticus B316] Length = 373 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 144/376 (38%), Positives = 207/376 (55%), Gaps = 20/376 (5%) Query: 16 KNPKDMRV-----VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCA 69 K + +V ++AMSGGVDSSV AAL + GY+ IG T++LY + G+CC+ Sbjct: 7 KPVTETKVEKNTALIAMSGGVDSSVAAALTLKKGYNCIGCTMRLYENDMVGLDLLGTCCS 66 Query: 70 GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 +D DAR VCD + + + ++ YE FR+ VI PF SY GETP PC+ CN+ +KF L Sbjct: 67 IEDTKDARSVCDKLGIDYNIYHYEAEFRDKVIEPFVCSYERGETPNPCIRCNKYLKFDSL 126 Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 R+LG D + TGHY R ++ + + DL +DQSY L+ +++QL Sbjct: 127 YKRARELGCDYIVTGHYARI-----EERDGHFYLLKAKDLNKDQSYVLYDLSEEQLRHTL 181 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 FPLG+ K VR +A E G + KS+SQDICFV G Y ++ R +GD V + Sbjct: 182 FPLGEFTKPEVRAIAEENGFVTSHKSESQDICFVPDGDYAGMIHRYRGKDYPKGDFVDKD 241 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 G +LG H+GIINYTIGQRRGLG+ L+V LD +++VI+ L + +R+ + Sbjct: 242 GNVLGTHDGIINYTIGQRRGLGIPADRRLYVTKLDVENNKVILADNIDLFKREMIIRDFH 301 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368 W+ + F+C KIR P V + V F++++ + +GQ+ V Y Sbjct: 302 WITGS----EPTNEFRCQAKIRYKHKEQPASVLPLGEKRARVVFDEAQRAITAGQSAVLY 357 Query: 369 TSDSNEARVLGGGIIS 384 D VLGGGII Sbjct: 358 DGDI----VLGGGIID 369 >gi|303241870|ref|ZP_07328364.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acetivibrio cellulolyticus CD2] gi|302590544|gb|EFL60298.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acetivibrio cellulolyticus CD2] Length = 360 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 137/364 (37%), Positives = 212/364 (58%), Gaps = 14/364 (3%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS--RKASKRKGSCCAGQDVYDARRVC 80 V++ MSGGVDSSV AA+L GYDVIGVT+Q++ + +G CC+ V DAR V Sbjct: 6 VMIGMSGGVDSSVAAAVLLEKGYDVIGVTMQIWPETKEEVKLTEGGCCSLSAVDDARGVA 65 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +++ + +YV +++E F VI F Y G+TP PC+ CNR VKF LLS +G D Sbjct: 66 NSLGIPYYVLNFKEVFEEKVINYFIDEYLKGKTPNPCIACNRHVKFESLLSKAVSMGLDY 125 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + D+ ++R ++ + + ++DQ+Y L+ TQ QL + P+G+ K+ V Sbjct: 126 VATGHYA---IIEYDENRKRYLLKKSVTQQKDQTYALYNLTQDQLSKVLMPIGNYSKDVV 182 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R A E+GL +A K DSQ+ICFV Y ++ + G+ V G ILGRH G+I Sbjct: 183 RQKAAELGLCVASKPDSQEICFVDDNNYGRFIQENTDKKIVPGNFVDTKGNILGRHKGLI 242 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +YT+GQR+GLG+A G+P++V+ LD ++ VI+G + ++ ++N++ D + Sbjct: 243 HYTVGQRKGLGIAFGKPMYVIGLDVKNNNVILGDNSEVFSDKLIADDLNFISI----DGL 298 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + + KIR S + ++G V V+F+ + + GQ+ VFY D V+G Sbjct: 299 YEPMRVKAKIRYSAKEGDATIIPIENGKVRVEFDTPQRAITPGQSVVFYEDDI----VVG 354 Query: 380 GGII 383 GGII Sbjct: 355 GGII 358 >gi|165932990|ref|YP_001649779.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia rickettsii str. Iowa] gi|165908077|gb|ABY72373.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia rickettsii str. Iowa] Length = 370 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 185/371 (49%), Positives = 242/371 (65%), Gaps = 13/371 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +VVAMSGGVDSS VAA+L G++VIG+TLQLY+ A +K +CCAGQD+YDA+ Sbjct: 12 KQSTIVVAMSGGVDSSAVAAMLNEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 71 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + HYV DYE +F+ +VI F SY GETPLPCV CN++VKF DL+ R+LGA Sbjct: 72 VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 131 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY+R GD+G + +D +DQSYFLF TT++QL LRFPLG + K Sbjct: 132 DKLATGHYVRK--INGDNGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLRFPLGGLTKG 186 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R LA + GL++ADK DSQDICF+ G Y V+ +I + G I+H+NG LG H+G Sbjct: 187 ETRKLASKFGLEVADKPDSQDICFIPDGNYKSVINKIRPNSSESGKIIHVNGFELGEHSG 246 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 IINYTIGQRRGLG+A EPL+VV +D + V VGP +L V +R++NWL D + ++ Sbjct: 247 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPESALNVQEFIIRDVNWLADEIKDN 306 Query: 319 AVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + VKIRS++ P + + DD + V F E VA GQACV Y ARV Sbjct: 307 ---EKLEVAVKIRSTRPPRLAEISKLGDDKMKVKFLCKEKAVAPGQACVIYAG----ARV 359 Query: 378 LGGGIISGSKR 388 LGGG I+ R Sbjct: 360 LGGGWITREIR 370 >gi|304436306|ref|ZP_07396284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370711|gb|EFM24358.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 361 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 150/368 (40%), Positives = 208/368 (56%), Gaps = 14/368 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVYDAR 77 + RVVVAMSGGVDSSV AALL+ GY+V+GVT++L + + G SCC+ V DAR Sbjct: 2 EKQRVVVAMSGGVDSSVTAALLQEQGYEVVGVTMRLSEEARDADLDGRSCCSLSSVDDAR 61 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV D + + HYV D+ + F+ VI F YA G TP PC+ CNR +KF LL TR LG Sbjct: 62 RVADILGIPHYVMDFTDPFQRLVIDYFTQEYARGRTPNPCIACNRYIKFEGLLEKTRALG 121 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A +ATGHY R +DG + + +D +DQSY L+ TQ+ + + FPLGD +K Sbjct: 122 AQYIATGHYARITH--TEDGT--YHLRKGIDAAKDQSYVLYHLTQEMMDHVLFPLGDYRK 177 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + +R +A + GL +A K++SQ+ICFV + Y ++ G I G +LG H Sbjct: 178 DEIRRMAEDYGLPVAHKAESQEICFVPRDDYKSYLRTHAPQTMQTGAITDRTGHVLGTHE 237 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI YTIGQRRGLG+A PL+V LD + +RVIVG + + H + +++W Sbjct: 238 GIAFYTIGQRRGLGIAAEHPLYVTALDASENRVIVGASDEIFAHALTASDLSWT----LS 293 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + KIR + +++ DG V V F + + V GQ+ VFY D+ Sbjct: 294 RPPHKPRRVRAKIRYGKREADAWMEPQGDGTVAVHFSEPQRAVTPGQSIVFYEGDA---- 349 Query: 377 VLGGGIIS 384 VLGGG I Sbjct: 350 VLGGGSID 357 >gi|325527989|gb|EGD05219.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia sp. TJI49] Length = 387 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 125/380 (32%), Positives = 178/380 (46%), Gaps = 32/380 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D Sbjct: 2 SKRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ +++ V F Y+AG TP P V CN +KF L L A Sbjct: 59 VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +++ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K Sbjct: 119 EMIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A ++GL A K DS ICF+ + + D + R G + +G+++G H G Sbjct: 174 KVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TRPGPMKTPDGKVVGEHIG 231 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT GQR+G+G+ GEP FV D S+ + V L ++ ++W Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIPSNTLYVVQGHDHPWLLSRQLVAGNVSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPV---FVQRNDDG---VYVDFEKSEVGVASGQA 364 + + DGF C K R Q G + F+ ++ V GQ+ Sbjct: 292 VAG----EPPADGFACGAKTRYRQADAACAYGTATPGPAGEARFSLAFDDAQWAVTPGQS 347 Query: 365 CVFYTSDSNEARVLGGGIIS 384 V Y + LGGGII Sbjct: 348 AVLYDGEI----CLGGGIIE 363 >gi|170732018|ref|YP_001763965.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia cenocepacia MC0-3] gi|205811368|sp|B1JVW3|MNMA_BURCC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|169815260|gb|ACA89843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia cenocepacia MC0-3] Length = 391 Score = 462 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 123/387 (31%), Positives = 178/387 (45%), Gaps = 37/387 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D Sbjct: 2 SKRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ +++ V F Y+AG TP P V CN +KF L L A Sbjct: 59 VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +++ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K Sbjct: 119 EMIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A ++GL A K DS ICF+ + + D + R G + +G+++G H G Sbjct: 174 KVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVVGEHIG 231 Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT GQR+G+G+ G+P FV D S+ + V L + ++W Sbjct: 232 LAFYTFGQRKGIGLGGSKDGNGDPWFVAAKDIASNTLYVVQGHDHPWLLSRELVAGNVSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-----------VQRNDDGVYVDFEKSEVGV 359 + + DGF C K R Q + + F+ ++ V Sbjct: 292 VAG----EPPADGFACGAKTRYRQADAACVFGGAATGAAAAGPAGEARFSLAFDDAQWAV 347 Query: 360 ASGQACVFYTSDSNEARVLGGGIISGS 386 GQ+ V Y + LGGGII + Sbjct: 348 TPGQSAVLYDGEI----CLGGGIIESA 370 >gi|188588033|ref|YP_001920516.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum E3 str. Alaska E43] gi|251778087|ref|ZP_04821007.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|205813690|sp|B2V3V9|MNMA_CLOBA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|188498314|gb|ACD51450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum E3 str. Alaska E43] gi|243082402|gb|EES48292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 361 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 128/351 (36%), Positives = 203/351 (57%), Gaps = 11/351 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQDVYDARR 78 +V+V MSGGVDSSV A LLK GY+VIG T+Q++ K +R+G CC+ V DARR Sbjct: 5 KKKVLVGMSGGVDSSVAAYLLKEQGYEVIGATMQIWQEDKEVEEREGGCCSLSAVEDARR 64 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VCD +++ YV ++ + F+ VI PF Y G TP PC++CN+ +KF +LL + +G Sbjct: 65 VCDKLDIPFYVLNFRDSFKKKVIEPFIQEYIDGRTPNPCIECNKHLKFDELLRKAQGIGV 124 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + + R ++ R D +DQ+Y L+ TQ QL P G+ K+ Sbjct: 125 DYIATGHYAKI-----EKKDDRYMLIRSDDDRKDQTYALYNFTQDQLAHTLMPCGEYTKD 179 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A+E+GL + +K DS++ICF+ + + G G+ V +G +LG+H G Sbjct: 180 RIREIAKEIGLAVHNKKDSEEICFISDNDHGKYILNAKPGAVKSGNFVDKSGNVLGKHKG 239 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I+ YTIGQR+GLG+++G P+FV ++ ++ V++G E + + ++N++ D Sbjct: 240 IVYYTIGQRKGLGLSVGRPVFVTDINPRTNEVVIGAEEDIFKTELIAGDLNFITF----D 295 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 + + KIR S P + DG V V F++ + + GQ+ VFY Sbjct: 296 KLEKEIEVEAKIRYSAKPAKATIVPLKDGRVKVVFDEKQRAITKGQSVVFY 346 >gi|288958853|ref|YP_003449194.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Azospirillum sp. B510] gi|288911161|dbj|BAI72650.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Azospirillum sp. B510] Length = 391 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 200/397 (50%), Positives = 257/397 (64%), Gaps = 18/397 (4%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +NSL L K P+D RVVVAMSGGVDSSV AA+L+ +GYDV+G+TLQLY+ A ++ G+CC Sbjct: 1 MNSLGLSKRPQDTRVVVAMSGGVDSSVTAAVLREEGYDVVGITLQLYDHGLALQKPGACC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+YDAR+V D I + HYV DYE RF V+ FA SY GETP+PCV CN+ VKF D Sbjct: 61 AGQDIYDARQVADRIGIPHYVLDYEGRFSQDVMDDFADSYLRGETPIPCVRCNQRVKFRD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ R LGAD LATGHY+R G R + R +D +DQSYFLFATT++QL L Sbjct: 121 LLNTARDLGADALATGHYVRRIA-----GPRGAELHRAVDPAKDQSYFLFATTREQLEFL 175 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K R LA GL++A K DSQDICFV G Y +VV ++ G GDIVH+ Sbjct: 176 RFPLGGLTKPETRALAGRHGLEVAAKPDSQDICFVPNGNYAEVVAKLRPGSVEPGDIVHV 235 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 +G++LGRH G+++YT+GQR+GLG+ E L+VV L+ RV+VGPR L + Sbjct: 236 DGRVLGRHKGVVHYTVGQRKGLGIGGIRGQEEEALYVVRLEPARRRVVVGPRRDLARSLV 295 Query: 304 YLREINWLGDGLFEDAVVD-GFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVAS 361 +R++NWLG D G + VK+RS+Q P DG V+ + + G+A Sbjct: 296 MVRDVNWLGSDPAPDQADGAGLEVSVKLRSAQPAAPALWHAGPDGTARVELREPQHGIAP 355 Query: 362 GQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLS 398 GQACV Y D RVLGGG ISG+ + V E + S Sbjct: 356 GQACVVYQGD----RVLGGGWISGT--AGTVAEGVES 386 >gi|34498857|ref|NP_903072.1| tRNA-specific 2-thiouridylase MnmA [Chromobacterium violaceum ATCC 12472] gi|81653627|sp|Q7MBE1|MNMA_CHRVO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|34104709|gb|AAQ61066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chromobacterium violaceum ATCC 12472] Length = 384 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 129/373 (34%), Positives = 185/373 (49%), Gaps = 28/373 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 R+VV MSGGVDSSV A LLK+ G++VIGV +Q + + C QD DA V Sbjct: 30 KKRIVVGMSGGVDSSVTAWLLKQQGHEVIGVFMQNWEDDNDDE---YCSIKQDALDAMSV 86 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + + ++ + +++ V F Y+AG TP P V CN +KF L +LGAD Sbjct: 87 ADIVGIDMEIVNFAKEYKDRVFSYFLKEYSAGRTPNPDVLCNAEIKFKAFLDYAMELGAD 146 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R G + + +D +DQSYFL+ Q QL FPLGD++K Sbjct: 147 CIATGHYARKLEQDGT-----HYLMKAVDHTKDQSYFLYRLQQHQLAKAIFPLGDIRKTE 201 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA E GL A K DS ICF+ + + + ++R G +V +G+++G H G+ Sbjct: 202 VRRLAEEAGLPTAAKKDSTGICFIGERPFREFLQRYLPTS--PGQMVTPDGKVVGEHIGL 259 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDK--NSSRVIVGP-RESLEVHRIYLREINWL 311 + YT+GQR+GL + GEP FV D N V+ G L + + +++W Sbjct: 260 MYYTLGQRKGLTIGGSRDGNGEPWFVAGKDIPGNKLIVVQGHDHPLLLKPTLSMADLSWT 319 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 DA G + K R + DG + F++ + V GQ+ V Y Sbjct: 320 ----LPDAPAPG-EYSAKNRYRMADAACTLSPIVDGQASLTFQEKQWAVTPGQSAVLYHG 374 Query: 371 DSNEARVLGGGII 383 D LGGGII Sbjct: 375 DI----CLGGGII 383 >gi|56475956|ref|YP_157545.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein [Aromatoleum aromaticum EbN1] gi|81598997|sp|Q5P7R7|MNMA_AZOSE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|56311999|emb|CAI06644.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein [Aromatoleum aromaticum EbN1] Length = 374 Score = 461 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 123/385 (31%), Positives = 191/385 (49%), Gaps = 29/385 (7%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 + +P M+VVV MSGGVDSSV A LLK+ G+DV G+ ++ + + C QD+ Sbjct: 4 NTDPNGMKVVVGMSGGVDSSVTALLLKQQGFDVTGLFMKNWEDDDDDE---YCSTRQDLV 60 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 D VCD I + V ++ +++ V F Y AG TP P V CN +KF L Sbjct: 61 DVASVCDVIGIDLEVVNFSAEYKDRVFADFLREYEAGRTPNPDVLCNSEIKFRCFLDHAM 120 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGAD +ATGHY + R + +DG+ + + D +DQSYFL+ Q QL FPLG Sbjct: 121 ALGADRIATGHYAQVREWA-NDGRSEYQLLKAEDGTKDQSYFLYRLNQAQLAKTLFPLGA 179 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQIL 253 + K VR +A E GL +A+K DS ICF+ + + + + R G+I +L +G+++ Sbjct: 180 LYKRDVRRIAAEAGLHVAEKKDSTGICFIGERPFREFLMRYLP--MRPGEIRNLDDGRVI 237 Query: 254 GRHNGIINYTIGQRRGL----------GVAMGEPLFVVYLDKNSSRV--IVGP-RESLEV 300 G H G++ +TIGQR+GL G + +V D ++ + + G +L Sbjct: 238 GEHQGLMYHTIGQRKGLHIGGIKGRQDGAGEHDAWYVAGKDVKANVLYAVQGHEHPALLK 297 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGV 359 R+ +++W+ V K R +P ++ D G + F + + + Sbjct: 298 TRLSATDLHWIAGRDPHTHWV----YTAKPRYRTPDMPCEIEALVDGGAEIVFAEPQWAL 353 Query: 360 ASGQACVFYTSDSNEARVLGGGIIS 384 GQ+ V Y LGGG+I+ Sbjct: 354 TPGQSVVVY----ESKVCLGGGVIA 374 >gi|325983111|ref|YP_004295513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosomonas sp. AL212] gi|325532630|gb|ADZ27351.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosomonas sp. AL212] Length = 359 Score = 461 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 121/373 (32%), Positives = 183/373 (49%), Gaps = 27/373 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RV+V MSGGVDSSV A +LK+ GYDV+G+ ++ + + C + QD DA V Sbjct: 3 KHRVIVGMSGGVDSSVAAYVLKQQGYDVVGLFMKNWEDDDTDE---YCSSRQDFIDAVSV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I++ + ++ ++ V F + Y AG TP P V CN +KF L +LGAD Sbjct: 60 ADVIDIPIEIVNFSIEYKERVFSQFLAEYQAGRTPNPDVLCNAEIKFKAFLDHANKLGAD 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R + + D +DQSYFL+ Q QL FP+G + K Sbjct: 120 YIATGHYARVR-----KAGGVFQLLKGEDGNKDQSYFLYRLNQAQLAKSLFPIGHLYKRE 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +ARE+ L + K DS ICF+ + + + + R G+I +G+++G H G+ Sbjct: 175 VRKIARELKLPNSSKKDSTGICFIGERPFREFLNRYLPHE--PGEIQTTDGKVIGEHIGL 232 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + YTIGQR+GLG+ EP FV D N + +IV L + +++W+ Sbjct: 233 MYYTIGQRQGLGIGGIRNGGDEPWFVAAKDMNRNVLIVVQGHNHPDLFRPSLKAIDLSWI 292 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370 D + K R Q P + + + V+F +++ + GQ+ V Y Sbjct: 293 DD----KQPHCNWVYAAKTRYRQTDAPCTITNLSHESCEVEFAQNQWAITPGQSVVIY-- 346 Query: 371 DSNEARVLGGGII 383 LGGG+I Sbjct: 347 --ESQVCLGGGVI 357 >gi|260438131|ref|ZP_05791947.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Butyrivibrio crossotus DSM 2876] gi|292809456|gb|EFF68661.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Butyrivibrio crossotus DSM 2876] Length = 357 Score = 461 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 147/367 (40%), Positives = 200/367 (54%), Gaps = 14/367 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDAR 77 +VVV MSGGVDSSV A +LK GYDVIGVT+Q++ G CC V DAR Sbjct: 2 KKKVVVGMSGGVDSSVAALILKEQGYDVIGVTMQIWQDEDYCDMSENGGCCGLSAVDDAR 61 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV +TI + +YV +++E F+ VI F + Y G TP PC+ CNR VK+ LL +G Sbjct: 62 RVAETIGIPYYVMNFKEEFKKTVIDYFVAEYLRGRTPNPCIACNRYVKWEALLHRCLGIG 121 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY R + + L +DQSY L+ TQ++L FP+ M+K Sbjct: 122 ADYIATGHYGNIEKLP----NGRFAVTKSASLNKDQSYVLYNLTQEELSHTLFPISTMEK 177 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + VR +A GL +A K DSQDICF++ G Y ++ + GD V G +LGRH Sbjct: 178 DEVRKIAERAGLPVAHKKDSQDICFIKDGDYASFIEEQTGVKSGPGDFVDSKGNVLGRHA 237 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GII+YT+GQR+GLG+A GEP +V+ LD ++V++G + L + +IN++ Sbjct: 238 GIIHYTVGQRKGLGIAFGEPRYVIRLDVPKNQVVLGTLDELMTKEVLFDDINYMSVSDIN 297 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSNEAR 376 + V K K+R S VP + DGV FE+ GQA VFY Sbjct: 298 EPV----KVTGKVRYSAKDVPCTLYPAKDGVMKAVFEEPVRAATPGQAAVFYKD---GCI 350 Query: 377 VLGGGII 383 V GG II Sbjct: 351 VCGGSII 357 >gi|188586399|ref|YP_001917944.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Natranaerobius thermophilus JW/NM-WN-LF] gi|205816905|sp|B2A5K1|MNMA_NATTJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|179351086|gb|ACB85356.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 368 Score = 461 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 140/370 (37%), Positives = 203/370 (54%), Gaps = 16/370 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY----NSRKASKRKGSCCAGQDVYDAR 77 RV+VAMSGGVDSSV A +LK GY+VIG ++++ + + CC+ V+DA+ Sbjct: 6 RVLVAMSGGVDSSVAALMLKEQGYEVIGAHMRIWYREEDEELYEQNVKGCCSLAAVHDAK 65 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV D I + YV +++E F + V+ F Y G TP PC+ CNR +K+ + L L Sbjct: 66 RVADKIGIPFYVLNFKEPFYDWVVKNFIDEYLQGRTPNPCIACNRFIKWEEFLKRAMALE 125 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D +ATGHY + V D+ K R ++ R D +DQSY L TQ+QL FPLGD K Sbjct: 126 CDYIATGHYSK---IVYDNLKNRYLLYRGKDKTKDQSYMLSQLTQEQLARTLFPLGDYYK 182 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 E VR++A + L +ADK DSQ+ICFV Y + ++ + G I+ G LG H Sbjct: 183 EDVRNIAEQNELGVADKPDSQEICFVPNNDYGEFLQSVVPEHINPGPILDAQGNKLGEHK 242 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI YTIGQRRGLG+++G P++V+ +D +++ +IVG +E L + EIN + Sbjct: 243 GIAFYTIGQRRGLGISLGRPVYVIDIDADNNALIVGDKEELYSDGLIAEEINLI----PY 298 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + + KIR + V +Q +D + V F + V GQ FY D Sbjct: 299 EQIENSIDIECKIRYNSRNVSSTLQPYGNDQLLVKFNQPVEAVTPGQGVTFYQDD----L 354 Query: 377 VLGGGIISGS 386 V+GGG I + Sbjct: 355 VIGGGTILKA 364 >gi|254246300|ref|ZP_04939621.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia cenocepacia PC184] gi|124871076|gb|EAY62792.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia cenocepacia PC184] Length = 447 Score = 461 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 123/387 (31%), Positives = 178/387 (45%), Gaps = 37/387 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D Sbjct: 58 SKRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 114 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ +++ V F Y+AG TP P V CN +KF L L A Sbjct: 115 VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDA 174 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +++ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K Sbjct: 175 EMIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKT 229 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A ++GL A K DS ICF+ + + D + R G + +G+++G H G Sbjct: 230 KVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVVGEHIG 287 Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT GQR+G+G+ G+P FV D S+ + V L + ++W Sbjct: 288 LAFYTFGQRKGIGLGGSKDGNGDPWFVAAKDIASNTLYVVQGHDHPWLLSRELVAGNVSW 347 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-----------VQRNDDGVYVDFEKSEVGV 359 + + DGF C K R Q + + F+ ++ V Sbjct: 348 VAG----EPPADGFACGAKTRYRQADAACVFGGAATGAAAAGPAGEARFSLAFDDAQWAV 403 Query: 360 ASGQACVFYTSDSNEARVLGGGIISGS 386 GQ+ V Y + LGGGII + Sbjct: 404 TPGQSAVLYDGEI----CLGGGIIESA 426 >gi|160892535|ref|ZP_02073325.1| hypothetical protein CLOL250_00064 [Clostridium sp. L2-50] gi|156865576|gb|EDO59007.1| hypothetical protein CLOL250_00064 [Clostridium sp. L2-50] Length = 362 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 145/372 (38%), Positives = 201/372 (54%), Gaps = 15/372 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDAR 77 V V MSGGVDSSV A LLK GY+VIGVT+Q++ A G CC V DAR Sbjct: 3 KKTVCVGMSGGVDSSVAAYLLKEQGYNVIGVTMQIWQDEDADQISEHGGCCGLSAVDDAR 62 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV + + +YV +++E FR VI F Y G TP PC+ CNR VK+ LL + +G Sbjct: 63 RVAAQLEIPYYVMNFKEDFRKYVIDYFVDEYRNGRTPNPCIACNRYVKWESLLRRSLSIG 122 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D +ATGHY R R + +E+DQ+Y L+ TQ QL P+G+ K Sbjct: 123 GDYIATGHYARVEQLSS----GRYTLRVAKGIEKDQTYALYNLTQDQLSKTLMPVGEYNK 178 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 +R +A ++G+ +A+K DSQDICFV G Y ++R A+ G+ V +NG++LG H Sbjct: 179 TQIRQIAADIGIQVANKPDSQDICFVPDGDYAGYLEREEGLKAVPGNFVDMNGKVLGTHK 238 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GII+YTIGQR+GLG+AMG P+FVV + ++ V++G + + N++ E Sbjct: 239 GIIHYTIGQRKGLGLAMGHPVFVVDIIPETNEVVIGENADTFSKELIADKTNFMSVERPE 298 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 D G + KIR + P + D D V V F++ GQA VFY D Sbjct: 299 D----GMQVIGKIRYAHKGAPCRIYMLDADRVRVVFDEPVRAATKGQAVVFYEDD----H 350 Query: 377 VLGGGIISGSKR 388 ++GGG I R Sbjct: 351 IVGGGTIKEIIR 362 >gi|261496469|ref|ZP_05992849.1| hypothetical protein COI_2187 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307672|gb|EEY08995.1| hypothetical protein COI_2187 [Mannheimia haemolytica serotype A2 str. OVINE] Length = 405 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 124/392 (31%), Positives = 206/392 (52%), Gaps = 29/392 (7%) Query: 4 SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63 + +L L +N K +V++ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 30 THFPKLTPEQLAENSK-KKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD- 87 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 C A D+ DA+ V D + + + ++ + + V F + Y AG TP P + CN+ Sbjct: 88 --YCTAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKE 145 Query: 124 VKFSDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 +KF L LGAD +ATGHY+R D + R +D +DQSYFL+A + Sbjct: 146 IKFKAFLEYAAEDLGADYIATGHYVRRTSDDQD-----AKLLRGLDENKDQSYFLYALNK 200 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R A Sbjct: 201 KQIGQSLFPVGEIEKPIVRVIAEDLGLATAKKKDSTGICFIGERKFKDFLARFLP--AQP 258 Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES 297 G+I + G+++GRH+G++ +T+GQR+GLG+ +P +VV D ++ +IV Sbjct: 259 GEIRTVEGKLVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLIVAQGHD 318 Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFE 353 L + +++ W+ + +C VK R Q + +Q +D+ + V F+ Sbjct: 319 NSALLSSGLIAKQLTWVDMQPLR----ENLRCTVKTRYRQADIACEIQVLDDETIRVMFD 374 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIISG 385 + ++ V GQ+ VFY + LGGGII Sbjct: 375 EPQIAVTPGQSAVFYLGEV----CLGGGIIES 402 >gi|261493287|ref|ZP_05989814.1| hypothetical protein COK_1696 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311137|gb|EEY12313.1| hypothetical protein COK_1696 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 406 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 124/392 (31%), Positives = 206/392 (52%), Gaps = 29/392 (7%) Query: 4 SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63 + +L L +N K +V++ MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 31 THFPKLTPEQLAENSK-KKVIIGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD- 88 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 C A D+ DA+ V D + + + ++ + + V F + Y AG TP P + CN+ Sbjct: 89 --YCTAAADLADAQAVADKLGMKLHKINFAAEYWDNVFEYFLAEYKAGRTPNPDILCNKE 146 Query: 124 VKFSDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 +KF L LGAD +ATGHY+R D + R +D +DQSYFL+A + Sbjct: 147 IKFKAFLEYAAEDLGADYIATGHYVRRTSDDQD-----AKLLRGLDENKDQSYFLYALNK 201 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ D + R A Sbjct: 202 KQIGQSLFPVGEIEKPIVRVIAEDLGLATAKKKDSTGICFIGERKFKDFLARFLP--AQP 259 Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGPRES 297 G+I + G+++GRH+G++ +T+GQR+GLG+ +P +VV D ++ +IV Sbjct: 260 GEIRTVEGKLVGRHDGLMYHTLGQRKGLGIGGVKGLSEDPFYVVEKDLINNVLIVAQGHD 319 Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFE 353 L + +++ W+ + +C VK R Q + +Q +D+ + V F+ Sbjct: 320 NSALLSSGLIAKQLTWVDMQPLR----ENLRCTVKTRYRQADIACEIQVLDDETIRVMFD 375 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIISG 385 + ++ V GQ+ VFY + LGGGII Sbjct: 376 EPQIAVTPGQSAVFYLGEV----CLGGGIIES 403 >gi|258546108|ref|ZP_05706342.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cardiobacterium hominis ATCC 15826] gi|258518660|gb|EEV87519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cardiobacterium hominis ATCC 15826] Length = 369 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 127/382 (33%), Positives = 189/382 (49%), Gaps = 27/382 (7%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 P+ ++ V +SGGVDSSV A LL+ GYDV G+ ++ + + G C A +DV DA Sbjct: 6 PPQGAKIAVGISGGVDSSVAALLLRDAGYDVFGIFMKNWEE---TYSSGYCSAEEDVEDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R VC+T+ + + ++ + V F + Y AG TP P + CNR +KF+++ +L Sbjct: 63 RDVCETLGIPLHTVNFVAEYHERVFRHFLAEYGAGRTPNPDILCNREIKFAEMAHYAAEL 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD LATGHY R + G + + +D +DQSYFL T QL FPLG M Sbjct: 123 GADYLATGHYARRGTHHGA-----PALYKGVDGSKDQSYFLSQITPAQLDKALFPLGGMA 177 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A + GL DK DS ICF+ + + D + G ++ G +G H Sbjct: 178 KSDVRRIAEQAGLVTYDKKDSTGICFIGERPFRDFLANYFEN--KPGKMITPQGVWVGEH 235 Query: 257 NGIINYTIGQRR-----GLGVAMGEPLFVVYLDKNSSRVIVGPRES--LEVHRIYLREIN 309 G++ YTIGQR+ G+ A EP +V+ + + +IVG E L + R++ Sbjct: 236 IGLMYYTIGQRQGLGIGGIAGASEEPWYVLDKNPADNTLIVGQGEHPLLYHDTLTARQLA 295 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 WL +A G K R Q P + + +D + V F++ + + GQ V Y Sbjct: 296 WLN-----EAPEAGRVYQAKTRYRQPDQPCRITWQGEDEITVQFDEPQRAITPGQYLVLY 350 Query: 369 TSDSNEARVLGGGIISGSKRSD 390 + R LGGG+I D Sbjct: 351 DGE----RCLGGGVIEARSNRD 368 >gi|126729666|ref|ZP_01745479.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sagittula stellata E-37] gi|126709785|gb|EBA08838.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sagittula stellata E-37] Length = 379 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 193/384 (50%), Positives = 254/384 (66%), Gaps = 12/384 (3%) Query: 3 VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62 + + LNSL L K P + RVVVAMSGGVDSSVVAA+LK +GYDV+GVTLQLY+ A Sbjct: 1 MPKDAPLNSLGLPKPPSETRVVVAMSGGVDSSVVAAMLKEEGYDVVGVTLQLYDHGAALA 60 Query: 63 RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122 +KG+CCAG D++DARRV + + HYV DYE F+ AVI FA SY G TP+PC+ CN Sbjct: 61 KKGACCAGIDIHDARRVAEDMGFPHYVLDYENIFQEAVIEEFADSYLGGATPVPCIRCNE 120 Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 VKF DLL + L AD +ATGHYI+ + G R + D RDQSYFLF+TT Sbjct: 121 RVKFKDLLETAKDLEADCMATGHYIQRKT-----GARGPELHSAADAARDQSYFLFSTTP 175 Query: 183 QQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 +QL LRFPLG + K + R+LA GL +ADK DSQDICFV G Y V++++ G A Sbjct: 176 EQLDFLRFPLGHLPSKAATRELAARYGLAVADKPDSQDICFVPDGNYAKVIEKLRPGAAE 235 Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEV 300 G+IVH++G++LG+H G+I+YTIGQRRGLG+ + EPL+VV LD + +V+VGP++ L Sbjct: 236 PGEIVHIDGRVLGQHRGVIHYTIGQRRGLGIGGLSEPLYVVRLDVETRQVVVGPKDLLAT 295 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGV 359 I +REINWLGD F ++ VK+RS++ P ++ + V+ +E GV Sbjct: 296 RTIPVREINWLGDAPFTSQA--EWQLDVKVRSTRPPREAIIRPLSETTGEVELVVAEEGV 353 Query: 360 ASGQACVFYTSDSNEARVLGGGII 383 + GQACVFY D +R+ GGG I Sbjct: 354 SPGQACVFYAPD--NSRIFGGGWI 375 >gi|149915230|ref|ZP_01903758.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseobacter sp. AzwK-3b] gi|149810951|gb|EDM70790.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseobacter sp. AzwK-3b] Length = 379 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 198/381 (51%), Positives = 254/381 (66%), Gaps = 12/381 (3%) Query: 6 ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65 + LNSL K P D RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A +KG Sbjct: 4 ESGLNSLGFAKAPADTRVVVAMSGGVDSSVVAAQLAEEGYDVVGVTLQLYDHGAALAKKG 63 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 +CCAG D++DARRV + + HYV DYE FR+AVI FA SY AG TP+PC+ CN VK Sbjct: 64 ACCAGIDIHDARRVAEDMGFPHYVLDYENIFRDAVIDEFADSYLAGATPVPCIRCNERVK 123 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F DLL R L AD +ATGHYI+ ++ G + D RDQSYFLF+TT +QL Sbjct: 124 FKDLLETARDLDADCMATGHYIQRKM-----GAHGPELHCAADAARDQSYFLFSTTPEQL 178 Query: 186 CDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 LRFPLG + K + R+LA GL +ADK DSQDICFV G Y V++++ G A G+ Sbjct: 179 DFLRFPLGHLPSKHATRELAARYGLKVADKPDSQDICFVPDGNYAAVIEKLRPGAAEPGE 238 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 I H++G+ILG H G+I+YTIGQRRGLG+ + EPL+VV LD ++ RVIVGP+E L + Sbjct: 239 IAHVDGRILGTHEGVIHYTIGQRRGLGIGGLSEPLYVVKLDVDAQRVIVGPKELLATRLV 298 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASG 362 +REINWLGD F+ + VK+RS++ P ++ D G V+ E GV+ G Sbjct: 299 PVREINWLGDAPFDSRP--EWHLSVKLRSTRPPQEAILRPLPDGGAEVELLSPEEGVSPG 356 Query: 363 QACVFYTSDSNEARVLGGGII 383 QACVFY ++ ++R+LGGG I Sbjct: 357 QACVFY--ETGDSRILGGGWI 375 >gi|300855514|ref|YP_003780498.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium ljungdahlii DSM 13528] gi|300435629|gb|ADK15396.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium ljungdahlii DSM 13528] Length = 358 Score = 461 bits (1186), Expect = e-127, Method: Composition-based stats. Identities = 132/368 (35%), Positives = 213/368 (57%), Gaps = 15/368 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARR 78 + +VVV MSGGVDSSV A LLK GY+VIGVT+Q++ K + +G CC+ V DAR Sbjct: 2 NKKVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMQVWQDDKYYEGMEGGCCSLSAVDDARL 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + +YV ++ F+ VI F Y G TP PCV CN+ +KF +LL LGA Sbjct: 62 VAYNLGIPYYVMNFRNEFKKCVIDYFIDEYTKGRTPNPCVACNKYIKFDELLKRAMDLGA 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R ++ + D ++DQ+Y L+ TQ QL P G KKE Sbjct: 122 DYVATGHYATVEKVND-----RYVLKKSKDSKKDQTYALYNLTQFQLEHTLMPCGIYKKE 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R++A+++GL + +K DS++ICF+ + +KR+ EG+ V +G++LG+H G Sbjct: 177 QIREIAKKIGLAVHNKKDSEEICFIPDNDHGSYIKRVAPNKVKEGNFVDKSGKVLGKHGG 236 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I YTIGQR+GLG+A G P++V+ ++ + V++G + + +++ +++N++ + Sbjct: 237 ITYYTIGQRKGLGIAFGIPMYVIDINPLKNEVVLGGEKDIFKNKLIAKDLNFM----PFE 292 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + KIR S P + ++D V V+F++++ + GQ+ VFY D + Sbjct: 293 KLDKPMRIQAKIRYSAKPADALISAIDEDRVKVEFDENQRAITKGQSVVFYDGDI----L 348 Query: 378 LGGGIISG 385 +GGG+I Sbjct: 349 VGGGVIDS 356 >gi|91790389|ref|YP_551341.1| tRNA-specific 2-thiouridylase MnmA [Polaromonas sp. JS666] gi|91699614|gb|ABE46443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Polaromonas sp. JS666] Length = 421 Score = 460 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 123/410 (30%), Positives = 192/410 (46%), Gaps = 42/410 (10%) Query: 2 VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61 V ++R N +DK R+VV +SGGVDS+V A LLK+ G++VIG+ ++ + S Sbjct: 9 VGIASSRDNRTPMDKQHSKQRIVVGLSGGVDSAVTAYLLKQQGHEVIGIFMKNWEDDDDS 68 Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 + C + D DA V D I + ++ +++ V F Y AG TP P + CN Sbjct: 69 E---YCSSNIDFVDAAAVADVIGIEIEHVNFAADYKDRVFAEFLREYQAGRTPNPDILCN 125 Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181 +KF L +LGA+ +ATGHY R R ++ + + +D +DQSYFL Sbjct: 126 AEIKFKAFLDHAMRLGAEKIATGHYARVRR---NESTGLHELLKGLDPAKDQSYFLHRLN 182 Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 Q QL FP+G++ K VR +A E+GL A K DS ICF+ + + D + R A Sbjct: 183 QAQLSKTLFPVGELHKTEVRRIADEIGLPNAKKKDSTGICFIGERPFRDFLNRYIAKA-- 240 Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM---------------------GEPLFV 280 G I + G++LG+H G+ YT+GQR+GLG+ EP FV Sbjct: 241 PGPIKNDRGRVLGKHVGLSFYTLGQRQGLGIGGVKARGAELKAAQARGQRGVGEHEPWFV 300 Query: 281 VYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPV 337 D +++ + V L+ + ++ +W+ ++ K R Q Sbjct: 301 ARKDLDTNTLWVVQGHDHPWLQSTVLSAQDCSWVAGTAPAAGLMA-----AKTRYRQVDA 355 Query: 338 PVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 ++ + F + + V GQ+ V Y D LGGG+I+ S Sbjct: 356 TCELRSATTANCELVFAEPQWAVTPGQSAVLYQGDV----CLGGGVIAAS 401 >gi|239947878|ref|ZP_04699631.1| tRNA-methyltransferase [Rickettsia endosymbiont of Ixodes scapularis] gi|239922154|gb|EER22178.1| tRNA-methyltransferase [Rickettsia endosymbiont of Ixodes scapularis] Length = 370 Score = 460 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 183/371 (49%), Positives = 240/371 (64%), Gaps = 13/371 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +VVAMSGGVDSS VAA+L G++VIG+TLQLY+ A +K +CCAGQD+YDA+ Sbjct: 12 KQSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 71 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + HYV YE +F+ +VI F SY GETPLPCV CN++VKF DL+ R+LGA Sbjct: 72 VANKLGIPHYVLGYESKFKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGA 131 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY+R GD+G + +D +DQSYFLF TT++QL L FPLG + K+ Sbjct: 132 DKLATGHYVRK--INGDNGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLSFPLGGLTKD 186 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R LA + GL++ADK DSQDICFV G Y V+ +I G + G IVH+NG LG H+G Sbjct: 187 ETRKLASKFGLEVADKPDSQDICFVPDGNYKSVINKIRPGSSESGKIVHVNGFELGEHSG 246 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 IINYTIGQRRGLG+A +PL+VV +D + V VGP +L V ++++NWL D E Sbjct: 247 IINYTIGQRRGLGIAYNKPLYVVKIDPKDNIVYVGPESALHVQEFIIKDVNWLAD---ET 303 Query: 319 AVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + VKIRS++ P + + DD + + F E VA GQACV Y + RV Sbjct: 304 KDNEKLEVAVKIRSTRPPRLAEISKLGDDKMKIKFLSEEKAVAPGQACVIYAGE----RV 359 Query: 378 LGGGIISGSKR 388 LGGG I+ R Sbjct: 360 LGGGWITRDMR 370 >gi|300113744|ref|YP_003760319.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosococcus watsonii C-113] gi|299539681|gb|ADJ27998.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosococcus watsonii C-113] Length = 391 Score = 460 bits (1185), Expect = e-127, Method: Composition-based stats. Identities = 115/376 (30%), Positives = 180/376 (47%), Gaps = 27/376 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +VVV +SGGVDSSV A L++ GY + G+ ++ + C QD DA+ V Sbjct: 27 KPKVVVGLSGGVDSSVAALRLQQQGYPISGLFMKNWVDFADESE---CTVAQDKKDAQAV 83 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + +S + ++ + + V F Y G TP P + CNR +KF L LG Sbjct: 84 TSLLGISFHEANFAIEYWDRVFRYFLEEYRLGRTPNPDILCNREIKFKTFLDHALALGNT 143 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ATGHY R D + R + + D +DQSYFL+ Q+QL FPLG+++K Sbjct: 144 LIATGHYARI-----DQQEGRYRLLKGRDKNKDQSYFLYTLGQKQLSHTLFPLGELEKPQ 198 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A + L K DS ICF+ + ++ + + R A G++ N + +G+H+G+ Sbjct: 199 VRRIAIQARLPNHSKKDSTGICFIGERRFKEFLSRYLP--AQPGEMCTPNKERIGQHDGL 256 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 + YT+GQRRGLG+ G P FVV + + + V L + +++W+ Sbjct: 257 MYYTLGQRRGLGIGGRKNSNGAPWFVVGKNLPQNILYVAQGRDHPWLRSLALEANQLHWV 316 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 + C KIR Q + +G + V F+ + GQA VFY + Sbjct: 317 AGY----PPSLPYSCTAKIRYRQADQHCTLTAITNGYIKVIFDVPQYAATPGQAIVFYQN 372 Query: 371 DSNEARVLGGGIISGS 386 D LGGG I+ + Sbjct: 373 D----ECLGGGTITTT 384 >gi|221233878|ref|YP_002516314.1| tRNA-specific 2-thiouridylase MnmA [Caulobacter crescentus NA1000] gi|220963050|gb|ACL94406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caulobacter crescentus NA1000] Length = 410 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 201/379 (53%), Positives = 260/379 (68%), Gaps = 4/379 (1%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P+ R+V AMSGGVDS+V AALL R GYDV+GVTLQLY+ A RKG+CCAGQD+ DAR Sbjct: 35 PEGARIVAAMSGGVDSTVTAALLARAGYDVVGVTLQLYDHGAAISRKGACCAGQDILDAR 94 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + I + HYV DYE RFR VI FA +Y GETP+PCV CN+TVKF DLL V R LG Sbjct: 95 MAAERIGIPHYVLDYESRFREQVIEDFADAYLRGETPIPCVRCNQTVKFRDLLDVARDLG 154 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A+ +ATGHY++ + +G R + R D +DQSYFLFATT++QL LRFPLG M K Sbjct: 155 AEAMATGHYVQRAMPG--NGGNRPELRRAADPAKDQSYFLFATTREQLDFLRFPLGGMDK 212 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 +VR +A +GL IADK DSQDICFV +GKY V+ RI A GD+VHL+G++LGRH Sbjct: 213 PTVRAVAAGLGLSIADKPDSQDICFVPEGKYTTVIDRIRPQGAEAGDVVHLDGRVLGRHE 272 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLF 316 G+ YTIGQRRGL +A+G+PLFVV ++ + +VIVGPRE+L + L+E +WLG Sbjct: 273 GVTRYTIGQRRGLNIAVGDPLFVVKINADKRQVIVGPREALLTASLTLKEGSWLGAQDSL 332 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 E A DG + ++RS+++PVP + D + V F+ +E GVA GQACV Y ++ R Sbjct: 333 EAAAEDGQRVLARVRSTREPVPGRLAMIDGALSVVFDGAEEGVAPGQACVLYDP-ADPDR 391 Query: 377 VLGGGIISGSKRSDAVEES 395 VLGGG I+G+ R + + Sbjct: 392 VLGGGFIAGTTRQMDLNAA 410 >gi|298369001|ref|ZP_06980319.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria sp. oral taxon 014 str. F0314] gi|298283004|gb|EFI24491.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria sp. oral taxon 014 str. F0314] Length = 367 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 117/383 (30%), Positives = 190/383 (49%), Gaps = 26/383 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++++ P++ ++V +SGGVDSSV AALLK+ G+ V GV +Q + + C Q Sbjct: 1 MNIENTPQN--IIVGLSGGVDSSVTAALLKQQGHRVHGVFMQNWEDDDNDE---YCSIKQ 55 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D + + + ++ ++++ V F Y AG TP P V CN +KF L Sbjct: 56 DSFDAIAVADILGIDIDIVNFAAQYKDKVFAYFLKEYGAGRTPNPDVLCNAEIKFKCFLD 115 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 116 YALEQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLQPFQLERAIFP 170 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 171 LGGLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGK 228 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 +G H G++ YT+GQR+GLG+ GEP FV + + +IV L + + + Sbjct: 229 AVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAGKNLAKNELIVVQGHDHPLLYTRSLVMND 288 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366 +++ ++ + K R P ++ +DD + F++ + V GQ+ V Sbjct: 289 LSFTLPERPKEG-----RYTCKTRYRMADAPCGLRYLDDDTAELVFDEPQWAVTPGQSAV 343 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 Y D LGGG+I + + Sbjct: 344 LYDGDV----CLGGGVIMATDKP 362 >gi|120613352|ref|YP_973030.1| tRNA-specific 2-thiouridylase MnmA [Acidovorax citrulli AAC00-1] gi|166991120|sp|A1TWB8|MNMA_ACIAC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|120591816|gb|ABM35256.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidovorax citrulli AAC00-1] Length = 378 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 120/396 (30%), Positives = 187/396 (47%), Gaps = 34/396 (8%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + +PK R+VV +SGGVDS+V A LLK+ G++V+G+ ++ + S+ C + D Sbjct: 1 MTASPKQ-RIVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---YCSSNVDF 56 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA V D I + ++ +++ V F Y AG TP P V CN +KF L Sbjct: 57 VDAAAVADVIGIEIEHVNFAAEYKDRVFAEFLREYEAGRTPNPDVLCNAEIKFKAFLDHA 116 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 ++GA+ +ATGHY R R + + +D +DQSYFL Q QL FP+G Sbjct: 117 MRVGAEKIATGHYARVRHNPA---TGLHELLKGLDPAKDQSYFLHRLNQSQLSRTLFPVG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR +A E+GL A K DS ICF+ + + + + R G I+ G+ L Sbjct: 174 ELRKTEVRRIAEEIGLPNAKKKDSTGICFIGERPFREFLNRYIQHA--PGPILDDRGRRL 231 Query: 254 GRHNGIINYTIGQRRGLGVAM------------GEPLFVVYLDKNSS--RVIVGP-RESL 298 G+H G+ YT+GQR+GLG+ P FV + + RV+ G L Sbjct: 232 GQHVGLSFYTLGQRQGLGIGGVKDKGAQRGGGEHAPWFVARKEVERNVLRVVQGHDHPWL 291 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEV 357 H + + NW+ C K R Q V + + G + F +++ Sbjct: 292 LSHTLQATDANWVAGRPPAAGA-----CAAKTRYRQQDAACTVTQAEGGDFALSFPEAQW 346 Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVE 393 V GQ+ V Y + LGGG+I+ + ++ Sbjct: 347 AVTPGQSAVLYDGEV----CLGGGVITAAGPVNSAA 378 >gi|300310029|ref|YP_003774121.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Herbaspirillum seropedicae SmR1] gi|300072814|gb|ADJ62213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase protein [Herbaspirillum seropedicae SmR1] Length = 368 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 120/379 (31%), Positives = 177/379 (46%), Gaps = 31/379 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RVV+ MSGGVDSSV A LLK GY+VIG+ ++ + S+ C +D DA Sbjct: 2 SKKRVVIGMSGGVDSSVSAWLLKEQGYEVIGLFMKNWEDDDDSE---YCSTREDWIDAVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + V ++ +++ V F Y AG TP P V CN +KF L +LGA Sbjct: 59 VADVVGVDIEAVNFASEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMKLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ATGHY R R D + + +D +DQSYFL Q+QL FPLG++ K Sbjct: 119 DLIATGHYARVRQGPQGD----FQLLKALDASKDQSYFLHRLNQEQLSRTVFPLGEIHKT 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A ++ L A K DS ICF+ + + + + R + G I +GQ +G H G Sbjct: 175 EVRRIAEQLQLPNAKKKDSTGICFIGERPFREFLNRYLSY--KPGPIKTADGQTVGEHVG 232 Query: 259 IINYTIGQRRGLGVAM----------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 + YT+GQR+G+G+ G+ +V D ++ + + L + Sbjct: 233 LSFYTLGQRKGIGIGGLKAHQNADGHGDAWYVARKDVENNTLYIVQGHDHPWLLSPTLSA 292 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQAC 365 +++W+ + A K R Q VP + F+ + V GQ+ Sbjct: 293 GQVSWVAGHAPQMAA-----LSAKTRYRQADVPCGFSDAGASFSLAFDTPQWAVTPGQSA 347 Query: 366 VFYTSDSNEARVLGGGIIS 384 V Y D LGGGII Sbjct: 348 VLYDGDV----CLGGGIIE 362 >gi|304321619|ref|YP_003855262.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Parvularcula bermudensis HTCC2503] gi|303300521|gb|ADM10120.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Parvularcula bermudensis HTCC2503] Length = 409 Score = 460 bits (1184), Expect = e-127, Method: Composition-based stats. Identities = 199/392 (50%), Positives = 259/392 (66%), Gaps = 14/392 (3%) Query: 1 MVVSEATRLNSLDLD-KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK 59 M+ + T L + LD PK R+VVAMSGGVDSSV AAL+ R GYDV+G+TLQLY+ Sbjct: 4 MIKTPLTDLTASQLDLGLPKGARIVVAMSGGVDSSVTAALVHRAGYDVVGITLQLYDHGV 63 Query: 60 ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119 A +KG+CCAGQD+ DAR V D + + HYV DYE+RF ++V+ FA +Y AG TP+PCV Sbjct: 64 AIAKKGACCAGQDIADARAVADRLGIPHYVLDYEDRFGDSVMQDFADTYLAGATPIPCVR 123 Query: 120 CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 CN+ VKF DLL R LGA +ATGHYIR D R + R D +DQSYFLFA Sbjct: 124 CNQRVKFRDLLHTARDLGAAAMATGHYIRR-----TDDDRGLALRRAEDAGKDQSYFLFA 178 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 TT++QL LRFPLGD+ KE+ R +A E+GL +ADK DSQDICFV +G+Y VV+R+ G Sbjct: 179 TTREQLSFLRFPLGDLPKETTRQIAAELGLGVADKPDSQDICFVPEGRYASVVERLRPGA 238 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVGPRESL 298 A G IV LNGQ+LG+H GII+YT+GQRRGL + EPL+V+ LD + + V+VGP+ +L Sbjct: 239 ATPGAIVDLNGQVLGQHQGIIHYTVGQRRGLALGGLVEPLYVIRLDADRAEVVVGPKAAL 298 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVG 358 V I L E+NWLG + VK+RS++ PV ++R+ V F++ + G Sbjct: 299 GVRAIRLDEMNWLG-----TEEAATHRVAVKVRSTKPPVLAVLKRSGAEAEVMFDEPQEG 353 Query: 359 VASGQACVFYTSDSNEARVLGGGIISGSKRSD 390 VA GQA VFY + +VLGGG I + D Sbjct: 354 VAPGQAGVFYA--LKDDQVLGGGWIRSTVPVD 383 >gi|225026476|ref|ZP_03715668.1| hypothetical protein EUBHAL_00725 [Eubacterium hallii DSM 3353] gi|224956215|gb|EEG37424.1| hypothetical protein EUBHAL_00725 [Eubacterium hallii DSM 3353] Length = 354 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 134/365 (36%), Positives = 204/365 (55%), Gaps = 17/365 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK-ASKRKGSCCAGQDVYDARRV 79 + ++AMSGGVDSSV A L+K GYD IGVT++LY++ R+ +CC+ D+ DAR V Sbjct: 3 KKALIAMSGGVDSSVAAYLMKEAGYDCIGVTMKLYDNEDIGMAREKTCCSLSDIEDARSV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C + + +YVF++++ F+ VI F S Y G TP PC++CNR +KF L + L D Sbjct: 63 CVKLGIPYYVFNFKDDFKEKVIDNFISCYQNGMTPNPCIECNRHLKFEHLYKRAKVLHCD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 V+ TGHY + ++ + + +D +DQSY L++ TQ+QL + FPLGD K Sbjct: 123 VIVTGHYAKITHD-----EQGYHLLKGVDDSKDQSYVLYSLTQEQLANTCFPLGDYSKTE 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R +A E G A K DSQDICF+ G Y +++ + GD V+ G+++GRH G Sbjct: 178 IRKIAEEQGFFNAHKHDSQDICFIPDGDYMSFIEKTTGKKSEPGDFVNQEGEVVGRHKGY 237 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YTIGQR+GLG++ +P +V + ++VIVG E L + + NW+ + Sbjct: 238 YGYTIGQRKGLGISAPKPYYVTEIRPEENKVIVGSNEDLFKTDLIANDFNWI------EN 291 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + +IR Q ++N DG V + F + + + GQA V Y + V+ Sbjct: 292 LAEDEVAKARIRYHQTEKEATARKNSDGTVDIHFLEPQRAITKGQAVVLYRDN----HVV 347 Query: 379 GGGII 383 GGG I Sbjct: 348 GGGTI 352 >gi|295690747|ref|YP_003594440.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caulobacter segnis ATCC 21756] gi|295432650|gb|ADG11822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caulobacter segnis ATCC 21756] Length = 409 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 203/378 (53%), Positives = 255/378 (67%), Gaps = 5/378 (1%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P+ R+V AMSGGVDS+V AALL R GYDV+GVTLQLY+ A RKG+CCAGQD+ DAR Sbjct: 35 PEGTRIVAAMSGGVDSTVTAALLARAGYDVVGVTLQLYDHGAAISRKGACCAGQDILDAR 94 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + I + HYV DYE RFR VI FA +Y GETP+PCV CN+TVKF DLL V R LG Sbjct: 95 MAAERIGIPHYVLDYESRFREQVIEDFADAYLRGETPIPCVRCNQTVKFRDLLDVARDLG 154 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A+ +ATGHY++ + G R + R D +DQSYFLFATT++QL LRFPLG M K Sbjct: 155 AEAMATGHYVQRGMPA---GTNRPQLRRAADPAKDQSYFLFATTREQLDFLRFPLGGMDK 211 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 +VR +A +GL IADK DSQDICFV +GKY V+ RI A GDIVHL+G++LGRH Sbjct: 212 PTVRAVAAGLGLSIADKPDSQDICFVPEGKYTTVIDRIRPQGAEAGDIVHLDGRVLGRHE 271 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD-GLF 316 G+ YTIGQRRGL VA+G+PLFVV +D + +VIVGPRE+L + L+E NWLG Sbjct: 272 GVTRYTIGQRRGLNVAVGDPLFVVRIDADKRQVIVGPREALLTAALTLKETNWLGGQDDL 331 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 A +G ++RS+++PV + D V V F+ SE GVA GQACV Y ++ R Sbjct: 332 AAAADEGQPVLARVRSTREPVAGRLSLLDGEVAVTFDGSEEGVAPGQACVLYDP-ADPER 390 Query: 377 VLGGGIISGSKRSDAVEE 394 VLGGG I+ + R+ + Sbjct: 391 VLGGGFIARAVRAMDLAP 408 >gi|30248966|ref|NP_841036.1| trmU; tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein [Nitrosomonas europaea ATCC 19718] gi|81584700|sp|Q82VV0|MNMA_NITEU RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|30138583|emb|CAD84874.1| trmU; tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase protein [Nitrosomonas europaea ATCC 19718] Length = 362 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 126/374 (33%), Positives = 180/374 (48%), Gaps = 27/374 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK+ GYDV G+ ++ + + C + QD DA V D Sbjct: 5 RVVVGMSGGVDSSVAALLLKQQGYDVTGLFMKNWEEDDTDE---YCSSRQDFLDAASVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ V ++ +R V F Y AG TP P V CN +KF L LGAD + Sbjct: 62 ILDIPLEVVNFSTEYRERVFNLFLKEYQAGRTPNPDVLCNSEIKFRAFLDHALNLGADWI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + + + + D +DQSYFL+ QQQL FP+G + K VR Sbjct: 122 ATGHYAQVH-----ETDGLFQLLKGEDGNKDQSYFLYRLNQQQLSHTIFPIGHLYKREVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +ARE L + K DS ICF+ + + + + R A G+I L+ Q++G H G++ Sbjct: 177 KIAREHRLPNSTKKDSTGICFIGERPFREFLNRYLP--ANPGEIHTLDDQVVGEHLGVMY 234 Query: 262 YTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR+GLG+ +P FV D + + V +L + +++W+ Sbjct: 235 YTIGQRQGLGIGGTRQGSEQPWFVSGKDIKKNVLYVVQGHDHPALLRSSLTAADLSWISG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDS 372 V KIR Q P + + D + F + G+ GQ+ V Y Sbjct: 295 TPPHQNWV----YAAKIRYRQTDAPCAITHFEHDSCQIGFAAPQWGITPGQSVVVY---- 346 Query: 373 NEARVLGGGIISGS 386 LGGG+I GS Sbjct: 347 ESKVCLGGGVIIGS 360 >gi|304387037|ref|ZP_07369292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis ATCC 13091] gi|304338909|gb|EFM05008.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis ATCC 13091] Length = 367 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 121/381 (31%), Positives = 186/381 (48%), Gaps = 24/381 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + C QD Sbjct: 1 MNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 58 FDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 GAD +ATGHY R + G + + +D +DQSYFL+ QL FPLG Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ + Sbjct: 173 GLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G H G++ YT+GQR+GLG+ GEP FV D + +IV L + + +++ Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 + L E + C K R P ++ +D+ + F++ + V GQ+ V Y Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELRYLDDETAELVFDEPQWAVTPGQSAVLY 345 Query: 369 TSDSNEARVLGGGIISGSKRS 389 D LGGGII + + Sbjct: 346 DGDI----CLGGGIIQSTDKP 362 >gi|167571198|ref|ZP_02364072.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia oklahomensis C6786] Length = 400 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 124/416 (29%), Positives = 178/416 (42%), Gaps = 58/416 (13%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D I + Sbjct: 1 MSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVADLIGID 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 ++ +++ V F Y+AG TP P V CN +KF L LGA +ATGHY Sbjct: 58 VEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGARTIATGHY 117 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 R R G R + + D +DQSYFL Q QL FPLG++ K VR++A + Sbjct: 118 ARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTLFPLGEIPKTKVREIAEQ 172 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 +GL A K DS ICF+ + + D + R G + +G+ +G H G+ YT GQ Sbjct: 173 IGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAFYTFGQ 230 Query: 267 RRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFED 318 R+G+G+ GEP FV D S+ + V L + ++W+ + Sbjct: 231 RKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRELVAGNVSWVAG----E 286 Query: 319 AVVDGFKCFVKIRSSQDPVPV------------------------------FVQRNDDGV 348 DG +C K R Q + + Sbjct: 287 PPADGVRCGAKTRYRQADAACAFGRATSGRAAPGRAASGQHASDGGAPSGVAADASGERF 346 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS--GSKRSDAVEESLLSVIGD 402 + F++ + V GQ+ V Y D LGGGII + R DA + + Sbjct: 347 SLTFDEPQWAVTPGQSAVLYDGDV----CLGGGIIESAATGRPDAAHAGGAPALAE 398 >gi|226940740|ref|YP_002795814.1| tRNA-specific 2-thiouridylase MnmA [Laribacter hongkongensis HLHK9] gi|226715667|gb|ACO74805.1| TrmU [Laribacter hongkongensis HLHK9] Length = 359 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 125/374 (33%), Positives = 180/374 (48%), Gaps = 28/374 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K R+VV +SGGVDSSV A LLK+ G++VIGV +Q + S+ C QD DA Sbjct: 4 KKKRIVVGLSGGVDSSVTAYLLKQQGHEVIGVFMQNWEDDNDSE---YCSIKQDSLDAMS 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + + ++ ++ V F Y+AG TP P V CN +KF L QLGA Sbjct: 61 VADLLGIDMEIVNFAREYKERVFQYFLDEYSAGRTPNPDVLCNAEIKFKAFLDYAMQLGA 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R G R + + +D +DQSYFL+ QL FPLGD+ K Sbjct: 121 DCIATGHYARKLERDG-----RHYLLKGVDPGKDQSYFLYRLVPAQLEKALFPLGDLHKT 175 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A E+GL A K DS ICF+ + + ++R G +V G+++G+H G Sbjct: 176 EVRRIAGEIGLPNARKKDSTGICFIGERPFRAFLQRYLP--MHPGAMVTPEGRVVGQHEG 233 Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 ++ YT+GQR+GL + GEP FV D + +IV L + +++W Sbjct: 234 LMYYTLGQRKGLNIGGSKDGNGEPWFVAGKDIPRNELIVVQGHDHPLLLKPVLEAEQLSW 293 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYT 369 +D K R + + + + F S+ V GQ+ V Y Sbjct: 294 TLGAAPDDGA-----YAAKNRYRMPDAACELTNLSSGRIRLAFADSQWSVTPGQSAVLYD 348 Query: 370 SDSNEARVLGGGII 383 D LGGG+I Sbjct: 349 GDV----CLGGGVI 358 >gi|315925181|ref|ZP_07921397.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621552|gb|EFV01517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudoramibacter alactolyticus ATCC 23263] Length = 367 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 133/372 (35%), Positives = 186/372 (50%), Gaps = 24/372 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR+VV MSGGVDSSV A LKR G+DVIG+ ++ ++ + G C A +D D +RV Sbjct: 1 MRIVVGMSGGVDSSVAALQLKRAGHDVIGIFMKNWDE---TDENGVCTATEDYEDVKRVS 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GAD 139 + + + +Y ++E+ +++ V F + Y G TP P V CN+ +KF + ++ GAD Sbjct: 58 EALAIPYYTVNFEKEYQDRVFAYFLAEYKRGRTPNPDVLCNKEIKFKAFMDYAMKVAGAD 117 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 LATGHY R D M + +D +DQ+YFL Q QL FP+GD+ K Sbjct: 118 KLATGHYARIDR---DPASGVFRMLKGIDTGKDQTYFLCQLGQAQLEKTLFPIGDLPKSE 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA L A K DS ICF+ + + + R A G I L+G + GRHNG+ Sbjct: 175 VRRLAEAHHLITAGKKDSTGICFIGERNFRQFLSRYLP--AKPGLIKDLSGNVKGRHNGL 232 Query: 260 INYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGD 313 + YT+GQRR G GEP FVV D + + + V +L + +NW+ Sbjct: 233 MYYTLGQRRGLGIGGQGTGEPWFVVRKDLSENVLYVVQGAGHPALYSTSLRASAMNWIAG 292 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + F C K R Q V V R+D + VDFEK + V GQ V Y + Sbjct: 293 ----ETPAASFGCTAKFRYRQPDQAVRVTPRSDTTIAVDFEKLQRAVTPGQEVVLYDGEI 348 Query: 373 NEARVLGGGIIS 384 LGG I Sbjct: 349 ----CLGGATID 356 >gi|325290391|ref|YP_004266572.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Syntrophobotulus glycolicus DSM 8271] gi|324965792|gb|ADY56571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Syntrophobotulus glycolicus DSM 8271] Length = 352 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 145/363 (39%), Positives = 201/363 (55%), Gaps = 15/363 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V VAMSGGVDSSV A LLKR+GYDV+GVT+Q++ + ++ +CC+ V DARRV Sbjct: 3 KVFVAMSGGVDSSVAALLLKREGYDVVGVTMQIWPQPE--DKEKACCSLDAVNDARRVAW 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + HYV ++ + F VI F Y AG TP PC+ CNR +KF L +GAD + Sbjct: 61 KLGIPHYVLNFRDDFEEKVIRYFCREYLAGRTPNPCIACNRYLKFDLFLQKALAMGADYI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 +TGHY R R ++ R + + +D +DQSY L+ Q QL FPLG KKE R Sbjct: 121 STGHYARIRR---NEQTERYELRKGLDQTKDQSYALYNLQQDQLQHTLFPLGTYKKEETR 177 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA+E GL +A K DSQ+ICFV + ++ G V +G ++G H GI Sbjct: 178 KLAQEGGLPVAFKKDSQEICFV-DHSHAQFIEEYLQSPLTPGKFVDADGSVVGIHQGIYR 236 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQ +GLG+AMG P++V ++ S+ V VG E L + ++N++ + Sbjct: 237 YTIGQHKGLGLAMGYPVYVTKIEPESNTVRVGKMEELFQDALLAEDLNFVSG----EGPT 292 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 K VKIR + VP + +G + V FE + + GQA VFY D VLGG Sbjct: 293 GPMKVQVKIRYNAQAVPAVIHPRAEGKMKVVFEIPQKSITPGQAVVFYDHDI----VLGG 348 Query: 381 GII 383 G I Sbjct: 349 GTI 351 >gi|297620680|ref|YP_003708817.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Waddlia chondrophila WSU 86-1044] gi|297375981|gb|ADI37811.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Waddlia chondrophila WSU 86-1044] Length = 354 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 125/366 (34%), Positives = 196/366 (53%), Gaps = 22/366 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV +SGGVDS+V A LLK+ GY VIG+ ++ + + + G C + D D RVCD Sbjct: 5 VVVGLSGGVDSAVAALLLKQQGYSVIGLFMKNWEEKDSD---GQCSSAADYEDVSRVCDL 61 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 +++ +Y ++ + + ++V + G TP P V CNR +KF L ++LG D LA Sbjct: 62 LDIPYYGVNFSQEYWDSVFADCLEEFKKGHTPNPDVLCNREIKFKVLFEKAKELGGDYLA 121 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R+R+Y G+ + + D ++DQSYFL+ L + FP+G + K+ VR+ Sbjct: 122 TGHYCRTRIYEGE-----AQLLKGADPDKDQSYFLYMIKSDILQSVLFPIGSLPKKEVRE 176 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +AR L + K DS ICF+ + + + + + + G+ ++G+ +GRH+G+ Y Sbjct: 177 IARRHNLPVHSKKDSTGICFIGERNFKEFLGQYISFA--PGEFQTMDGKTVGRHDGVPFY 234 Query: 263 TIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGDGLFED 318 TIGQRRGLG+ G+ FVV D + V V +L +Y E++W+ + Sbjct: 235 TIGQRRGLGIGGAGDAWFVVGKDVEKNIVFVEQGADHPALYATDLYADELSWVSS---KG 291 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSNEARV 377 A F C KIR Q P + ++G+ V+F + + V Q+ VFY D Sbjct: 292 APEKTFVCSSKIRYRQKDKPCRITAIEEGIARVEFPEKQRAVTPRQSIVFYDGDV----C 347 Query: 378 LGGGII 383 LGGG+I Sbjct: 348 LGGGMI 353 >gi|51473501|ref|YP_067258.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia typhi str. Wilmington] gi|73920129|sp|Q68X66|MNMA_RICTY RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|51459813|gb|AAU03776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia typhi str. Wilmington] Length = 358 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 178/367 (48%), Positives = 239/367 (65%), Gaps = 13/367 (3%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 +VVAMSGGVDSS VAA+L G+ VIG+TLQLY+ A +K +CCAG+D+YDA+ V + Sbjct: 4 IVVAMSGGVDSSAVAAMLHEQGHHVIGITLQLYDYGIAVGKKNACCAGKDIYDAKMVANK 63 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + HYV DYE +F+ +VI F +SY GETPLPCV CN+ VKF DL++ ++LGAD LA Sbjct: 64 LGIPHYVLDYENKFKESVIDNFVNSYLHGETPLPCVQCNKLVKFRDLINTAKELGADKLA 123 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY+R +G + +D +DQSYFLF T++QL L FPLG K R Sbjct: 124 TGHYVRKI-----NGYNGAELHTGLDAAKDQSYFLFTITREQLEYLIFPLGGFTKYETRK 178 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA + GLD+ADK DSQDICFV G Y V+ +I + G IVH+NG LG H+GIINY Sbjct: 179 LASKFGLDVADKPDSQDICFVPDGNYKTVINKIRPEASTSGKIVHINGFELGEHSGIINY 238 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQRRGLG+A EPL+VV +D +++ V VG +L VH ++++NWL D + ++ + Sbjct: 239 TIGQRRGLGIAYNEPLYVVKIDPSNNIVYVGQESALHVHEFIIKDVNWLADEIKDN---E 295 Query: 323 GFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 VKIRS++ P + + +D + V F +E VA GQACV Y + RVLGGG Sbjct: 296 KLAVDVKIRSTRPPCHAEISKLCNDKIKVQFLSAEKAVAPGQACVIYAGE----RVLGGG 351 Query: 382 IISGSKR 388 I+ + R Sbjct: 352 WITRNIR 358 >gi|218663598|ref|ZP_03519528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhizobium etli IE4771] Length = 345 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 210/345 (60%), Positives = 262/345 (75%), Gaps = 1/345 (0%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +N+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+ A R GSCC Sbjct: 1 MNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRVC+T+ + HYV DYE+RFR VI PFA SY AGETP+PCV CN+TVKF+D Sbjct: 61 AGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFAD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRSR + RR + RP D +RDQSYFLFATTQ+Q+ L Sbjct: 121 LLATAKELGADALATGHYIRSRPNPSPEHPGRRALFRPADADRDQSYFLFATTQEQIDYL 180 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K R LA EMGL +A K+DSQDICFV QGKY D++ ++ AL G+IVHL Sbjct: 181 RFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEIVHL 240 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G++LG H GI+++TIGQRRG+G+A GEPL+VVYLD S RVIVGP+E+LE HR+YLR++ Sbjct: 241 DGRVLGSHEGILHFTIGQRRGIGIATGEPLYVVYLDARSRRVIVGPKEALETHRVYLRDV 300 Query: 309 NWLGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF 352 NWLGD DA GF C+ K+RS++ P P + + YVD Sbjct: 301 NWLGDETLADAASGGGFACYAKVRSTRAPAPAVLHVDATCTYVDL 345 >gi|157803967|ref|YP_001492516.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia canadensis str. McKiel] gi|166235078|sp|A8EZE8|MNMA_RICCK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|157785230|gb|ABV73731.1| hypothetical protein A1E_04020 [Rickettsia canadensis str. McKiel] Length = 368 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 178/364 (48%), Positives = 243/364 (66%), Gaps = 13/364 (3%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 +VVAMSGGVDS+ VAA+L GY+VIG+TLQLY+ A +K +CCAGQD+YDA+ V + Sbjct: 11 IVVAMSGGVDSAAVAAMLHAQGYNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKMVANK 70 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + HYV DYE +F+ +VI F SY GETPLPCV CN++VKF DL+ ++LGA LA Sbjct: 71 LGIPHYVLDYESKFKESVIENFVDSYLQGETPLPCVQCNKSVKFKDLIKTAKELGAAQLA 130 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY+R GD+G + +D +DQSYFLF TT++QL L FPLG K+ R Sbjct: 131 TGHYVRK--INGDNGAE---LHIGIDPAKDQSYFLFTTTKEQLDYLSFPLGWFTKDETRK 185 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA + GL++A+K DSQDICFV G Y +V+ +I G + +G I+H+NG LG H+GIINY Sbjct: 186 LASKFGLEVANKPDSQDICFVPDGNYKNVINKIRPGSSKKGKIIHVNGFELGEHSGIINY 245 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQRRGLG+A EPL+V+ +D N++ V VGP +L + ++++NWL D + ++ + Sbjct: 246 TIGQRRGLGIAYNEPLYVIKIDPNNNIVYVGPESALNMQEFIIKDVNWLADEIKDN---E 302 Query: 323 GFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + VKIRS++ P + + DD + V F E VA GQACV Y + RVLGGG Sbjct: 303 KLEVAVKIRSTRLPSLAEISKLGDDKMKVKFLSEEKAVAPGQACVIYDGE----RVLGGG 358 Query: 382 IISG 385 I+ Sbjct: 359 WITR 362 >gi|219669597|ref|YP_002460032.1| tRNA-specific 2-thiouridylase MnmA [Desulfitobacterium hafniense DCB-2] gi|219539857|gb|ACL21596.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfitobacterium hafniense DCB-2] Length = 370 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 147/376 (39%), Positives = 204/376 (54%), Gaps = 23/376 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + +VVV MSGGVDSS+ AALLK +GY+VIG+TLQ S G CC+ + DARR Sbjct: 5 EKKKVVVGMSGGVDSSMAAALLKEEGYEVIGITLQTMPSG-GPDDVGGCCSITAIDDARR 63 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + HYV ++ F VI F ++Y +GETP PC CNR V++ + L R LGA Sbjct: 64 VAHQLGIPHYVLNFRTIFEENVIDYFTNAYLSGETPNPCTMCNRVVRWGEFLRKARALGA 123 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY + + D R +M RP+D +DQ+Y L+ TQ QL FPL D KKE Sbjct: 124 DYLATGHYAK---ILQDPDSGRYLMSRPVDTWKDQTYMLYNLTQDQLKHTLFPLADYKKE 180 Query: 199 SVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 +R++A E GL ++ K DSQ+ICF+ Y ++ + G+ V G ILGRH Sbjct: 181 HIREMAAERGLLRVSRKPDSQEICFIPDDDYVSFIRERSPDKIKPGNFVDRQGNILGRHQ 240 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 G+INYT+GQR+GLGV G+P+FV+ + + VI+G + + H + ++NW+ E Sbjct: 241 GLINYTVGQRKGLGVTFGKPMFVLGFNVEGNEVILGEDQEVYAHTLLATDLNWIAITGLE 300 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG----------VYVDFEKSEVGVASGQACVF 367 + KIR + D V V+F + + GQA VF Sbjct: 301 GPLT----VQAKIRYKAPLAEAKIIPLKDSETLPGAIGPVVRVEFTTPQRAITPGQAVVF 356 Query: 368 YTSDSNEARVLGGGII 383 Y D V+GGG I Sbjct: 357 YQGD----LVVGGGKI 368 >gi|163815111|ref|ZP_02206492.1| hypothetical protein COPEUT_01267 [Coprococcus eutactus ATCC 27759] gi|158449520|gb|EDP26515.1| hypothetical protein COPEUT_01267 [Coprococcus eutactus ATCC 27759] Length = 363 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 138/367 (37%), Positives = 200/367 (54%), Gaps = 15/367 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDAR 77 V V MSGGVDSSV A LLK GY+VIGVT+Q++ CC V DAR Sbjct: 8 KKTVCVGMSGGVDSSVAALLLKEQGYNVIGVTMQIWQDEDRDVVSAHAGCCGLSAVDDAR 67 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV +++ +YV +++E F+ VI F Y G TP PC+ CNR VK+ LL+ +G Sbjct: 68 RVASQLDIPYYVMNFKEEFKKYVIDYFVDEYKHGRTPNPCIACNRYVKWESLLTRCMAIG 127 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D +ATGHY R R + +++DQ+Y L+ TQ+QL P+G+ K Sbjct: 128 GDYIATGHYARIIQLP----NGRYTLQEARGIDKDQTYALYNLTQEQLARTLMPVGEYSK 183 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 +R +A + GL +A K DSQDICFV G Y ++ A+ GD V ++G ++GRH Sbjct: 184 PEIRKIAEDHGLMVAHKPDSQDICFVPDGDYAGYLENEAGLKAVPGDFVDIHGNVIGRHK 243 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GII+YTIGQR+GLG+AMG P+FVV + +++V++G + R+ +N++ Sbjct: 244 GIIHYTIGQRKGLGLAMGHPVFVVDIIPETNQVVIGENGDVFSERLTCNRLNFMSIAD-- 301 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + KIR + +++ ++D V F++ V GQA VFY D Sbjct: 302 --LTEPMHVKAKIRYNHKGSMCTIRKIDEDLVEAVFDEPVRAVTKGQAVVFYECD----H 355 Query: 377 VLGGGII 383 VLGGG I Sbjct: 356 VLGGGSI 362 >gi|313668065|ref|YP_004048349.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methy lt ransferase [Neisseria lactamica ST-640] gi|313005527|emb|CBN86963.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methy lt ransferase [Neisseria lactamica 020-06] Length = 383 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 122/383 (31%), Positives = 187/383 (48%), Gaps = 24/383 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + C Q Sbjct: 15 LRMNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 71 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 72 DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLD 131 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 132 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERAIFP 186 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 187 LGGLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGE 244 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 +G H G++ YT+GQR+GLG+ GEP FV D + +IV L + + + Sbjct: 245 TVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMND 304 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366 +++ L E + C K R P ++ +D+ + F++ + V GQ+ V Sbjct: 305 LSFT---LPERPKAGRYTC--KTRYRMADAPCELRYLDDETAELVFDEPQWAVTPGQSAV 359 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 Y D LGGGII + + Sbjct: 360 LYDGDI----CLGGGIIQTTDKP 378 >gi|78065260|ref|YP_368029.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia sp. 383] gi|123569299|sp|Q39JI1|MNMA_BURS3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|77966005|gb|ABB07385.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia sp. 383] Length = 383 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 125/402 (31%), Positives = 184/402 (45%), Gaps = 40/402 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D Sbjct: 2 SKRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ +++ V F Y+AG TP P V CN +KF L L A Sbjct: 59 VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +++ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K Sbjct: 119 EMIATGHYARVRERDG-----RFELLKAYDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A ++GL A K DS ICF+ + + D + R G + +G+I+G H G Sbjct: 174 KVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKIVGEHIG 231 Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT GQR+G+G+ G+P FV D S+ + V L + ++W Sbjct: 232 LAFYTFGQRKGIGLGGSKSGNGDPWFVAAKDIASNTLYVVQGHDHPWLLARELVAGNVSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQ----------DPVPVFVQRNDDGVYVDFEKSEVGVA 360 + + +GF C K R Q P P + + F+ ++ V Sbjct: 292 VAG----EPPAEGFACGAKTRYRQADAACAFGAATPGPA----GEARFSLAFDDAQWAVT 343 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGD 402 GQ+ V Y + LGGGII + + + + + Sbjct: 344 PGQSAVLYDGEI----CLGGGIIESAVIGQPGQTAPARALAE 381 >gi|84516171|ref|ZP_01003531.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Loktanella vestfoldensis SKA53] gi|84509867|gb|EAQ06324.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Loktanella vestfoldensis SKA53] Length = 379 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 196/381 (51%), Positives = 255/381 (66%), Gaps = 12/381 (3%) Query: 6 ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65 + +NSL K P D RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A +KG Sbjct: 4 ESPINSLGFAKAPADTRVVVAMSGGVDSSVVAAKLAEEGYDVVGVTLQLYDHGAALAKKG 63 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 +CCAG+D++DARRV + + HYV DYE FR AV+ FA SY G TP+PC+ CN VK Sbjct: 64 ACCAGRDIHDARRVAEEMGFPHYVLDYENTFREAVMDEFADSYLGGATPVPCIRCNERVK 123 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F DLL R L AD +ATGHYI+ ++ G + + D +DQSYFLF+TTQ QL Sbjct: 124 FKDLLQTARDLDADCMATGHYIQRKM-----GVQGAELHSAADAAKDQSYFLFSTTQDQL 178 Query: 186 CDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 LRFPLG K K+ R LA + GL +ADK DSQDICFV G Y V++++ G A G Sbjct: 179 DYLRFPLGHHKSKDETRALAAKYGLSVADKPDSQDICFVPNGDYAAVIEKLRPGAASPGT 238 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 IV +NGQ+LG+HNG+I+YT+GQRRGLG+ + +PL+VV LD + +VIVGP++ L R+ Sbjct: 239 IVDINGQVLGQHNGVIHYTVGQRRGLGIGGLADPLYVVRLDVDKKQVIVGPKDMLATRRV 298 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASG 362 LREINW+G G D + + V++RS++ P ++ +D V+ +E GV+ G Sbjct: 299 PLREINWIGGGKLTD--IAERQIAVRVRSTRPPTDAILRPISDTEAEVELLVAEQGVSPG 356 Query: 363 QACVFYTSDSNEARVLGGGII 383 QACVFY +DS RVLGGG I Sbjct: 357 QACVFYDTDS--TRVLGGGWI 375 >gi|171464102|ref|YP_001798215.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193640|gb|ACB44601.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 370 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 122/388 (31%), Positives = 185/388 (47%), Gaps = 30/388 (7%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 LNS + + + +VV+ MSGGVDSSV A +LK G++VIG+ ++ + + + C Sbjct: 3 PLNSSSIPSS-RPKKVVIGMSGGVDSSVAAWMLKEQGFEVIGLFMKNWEDDDSDE---YC 58 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 A QD D V D I + ++ +R V F YAAG TP P V CN +KF Sbjct: 59 SARQDWLDVVSVADMIGIDVEAVNFATEYRECVFADFLREYAAGRTPNPDVLCNAEIKFK 118 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 L LGAD +ATGHY R R G + + + +D+ +DQSYFL TQQQL + Sbjct: 119 AFLDHAMSLGADAIATGHYARVRHESG-----KVQLLKAVDVSKDQSYFLHRLTQQQLAN 173 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 + FPLG++ K VR +A ++GL A K DS ICF+ + + + + R + G I Sbjct: 174 VMFPLGEIPKTEVRKIADQIGLHNAKKKDSTGICFIGERPFREFLNRYLPRV--PGPIKT 231 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLE 299 G+ +G H G+ +T+GQR+G+G+ G+ +V D ++ + V L Sbjct: 232 PEGKTVGEHMGLAFFTLGQRKGIGLGGSQDGNGDAWYVARKDIPNNTLYVAQGHEHPWLL 291 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEV 357 + + +W+ + K R Q + + + F ++ Sbjct: 292 AKTLSAMDASWVSGEVPSLG-----SYSAKTRYRQADSACTMSAGAEAQSFELSFLDAQW 346 Query: 358 GVASGQACVFYTSDSNEARVLGGGIISG 385 V GQ+ V Y D LGGGIIS Sbjct: 347 AVTPGQSAVLYDGDI----CLGGGIISA 370 >gi|254437717|ref|ZP_05051211.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Octadecabacter antarcticus 307] gi|198253163|gb|EDY77477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Octadecabacter antarcticus 307] Length = 379 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 194/379 (51%), Positives = 250/379 (65%), Gaps = 12/379 (3%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 LNSL K P RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A +KG+C Sbjct: 6 PLNSLGFAKPPSQTRVVVAMSGGVDSSVVAAQLAEEGYDVVGVTLQLYDHGAALAKKGAC 65 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 CAG+D++DARRV + + HYV DYE FR AVI FA SY AG TP+PC+ CN VKF Sbjct: 66 CAGRDIHDARRVAEDMGFPHYVLDYENTFREAVIDEFADSYLAGATPVPCIRCNERVKFK 125 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL + L AD +ATGHYI+ ++ G R + D RDQSYFLF+T +QL Sbjct: 126 DLLETAKDLDADCMATGHYIQRKM-----GPRGAQLHCAEDANRDQSYFLFSTKPEQLEY 180 Query: 188 LRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 LRFPLG + K++ R+LAR+ GL +ADK DSQDICFV G Y V++++ G A G+IV Sbjct: 181 LRFPLGHLPSKDATRELARKYGLALADKPDSQDICFVPNGNYAAVIEKLRPGAAEPGNIV 240 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 ++G +L +H G+I+YTIGQRRGLG+ + +PL+VV LD + VIVGP++ L + + Sbjct: 241 DIDGTVLAQHRGVIHYTIGQRRGLGIGGLADPLYVVKLDVDKKHVIVGPKDLLTTRTVPV 300 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQA 364 REINWLGD F+ VKIRS++ P+ V+ + ++ E GVA GQA Sbjct: 301 REINWLGDDAFDSKT--ERHISVKIRSTKPPMEAIVRPLSATTAEIELLTPEEGVAPGQA 358 Query: 365 CVFYTSDSNEARVLGGGII 383 CVFY SDS +R+ GGG I Sbjct: 359 CVFYDSDS--SRIFGGGWI 375 >gi|240014473|ref|ZP_04721386.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae DGI18] gi|240120995|ref|ZP_04733957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae PID24-1] gi|268599754|ref|ZP_06133921.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae MS11] gi|268583885|gb|EEZ48561.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae MS11] Length = 383 Score = 458 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 122/383 (31%), Positives = 188/383 (49%), Gaps = 24/383 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + + C Q Sbjct: 15 LRMNTTSNTSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWENDDNDE---YCSIKQ 71 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 72 DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 131 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 132 YAVEQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 186 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 187 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGK 244 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 +G H G++ YT+GQR+GLG+ GEP FV D + +IV L + + + Sbjct: 245 TIGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMND 304 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACV 366 +++ L E + C K R P + +D+ + F++ + V GQ+ V Sbjct: 305 LSFT---LPERPKAGRYTC--KTRYRMADAPCELCYLDDETAELVFDEPQWAVTPGQSAV 359 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 Y D LGGGII + + Sbjct: 360 LYDVDI----CLGGGIIQTTDKP 378 >gi|16125150|ref|NP_419714.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caulobacter crescentus CB15] gi|14195261|sp|P58074|MNMA_CAUCR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|13422162|gb|AAK22882.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caulobacter crescentus CB15] Length = 383 Score = 458 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 201/379 (53%), Positives = 260/379 (68%), Gaps = 4/379 (1%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P+ R+V AMSGGVDS+V AALL R GYDV+GVTLQLY+ A RKG+CCAGQD+ DAR Sbjct: 8 PEGARIVAAMSGGVDSTVTAALLARAGYDVVGVTLQLYDHGAAISRKGACCAGQDILDAR 67 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + I + HYV DYE RFR VI FA +Y GETP+PCV CN+TVKF DLL V R LG Sbjct: 68 MAAERIGIPHYVLDYESRFREQVIEDFADAYLRGETPIPCVRCNQTVKFRDLLDVARDLG 127 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A+ +ATGHY++ + +G R + R D +DQSYFLFATT++QL LRFPLG M K Sbjct: 128 AEAMATGHYVQRAMPG--NGGNRPELRRAADPAKDQSYFLFATTREQLDFLRFPLGGMDK 185 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 +VR +A +GL IADK DSQDICFV +GKY V+ RI A GD+VHL+G++LGRH Sbjct: 186 PTVRAVAAGLGLSIADKPDSQDICFVPEGKYTTVIDRIRPQGAEAGDVVHLDGRVLGRHE 245 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLF 316 G+ YTIGQRRGL +A+G+PLFVV ++ + +VIVGPRE+L + L+E +WLG Sbjct: 246 GVTRYTIGQRRGLNIAVGDPLFVVKINADKRQVIVGPREALLTASLTLKEGSWLGAQDSL 305 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 E A DG + ++RS+++PVP + D + V F+ +E GVA GQACV Y ++ R Sbjct: 306 EAAAEDGQRVLARVRSTREPVPGRLAMIDGALSVVFDGAEEGVAPGQACVLYDP-ADPDR 364 Query: 377 VLGGGIISGSKRSDAVEES 395 VLGGG I+G+ R + + Sbjct: 365 VLGGGFIAGTTRQMDLNAA 383 >gi|294339421|emb|CAZ87777.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thiomonas sp. 3As] Length = 368 Score = 458 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 125/377 (33%), Positives = 177/377 (46%), Gaps = 26/377 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV +SGGVDSSV A LLK+ GY V+G+ ++ + S+ C QD DA V D Sbjct: 9 VVVGLSGGVDSSVSAWLLKQQGYTVVGLFMKNWEDDDDSE---YCSTRQDWLDAASVADR 65 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + ++ ++ V F YAAG TP P V CN +KF L +LGAD +A Sbjct: 66 IGIDIEAVNFAAEYKERVFAEFLREYAAGRTPNPDVLCNAEIKFKAFLDHAMRLGADRIA 125 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R R + + R +D +DQSYFL Q QL FP+G++ K VR Sbjct: 126 TGHYARVR-----ETDHGFELLRGLDASKDQSYFLHRLNQAQLARTLFPVGELNKTEVRK 180 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A +GL A K DS ICF+ + + D + R G + G+ +G H G+ Y Sbjct: 181 VAETIGLHNARKKDSTGICFIGERPFRDFLSRYLP--TQPGAMKTPEGKTVGEHLGLAFY 238 Query: 263 TIGQRRGL-----GVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314 T+GQR+G+ GEP FV D +++IV L H + +W+ Sbjct: 239 TLGQRKGIGLGGSNSGNGEPWFVAGKDLERNQLIVAQGHDHPLLLSHTLQALSASWVSGT 298 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + V F K R Q Q + + + F+ + V GQ+ V Y + Sbjct: 299 APTEEV---FGYGAKTRYRQVDAACRFQDQGPERFTLKFDAPQWAVTPGQSAVLYDGEV- 354 Query: 374 EARVLGGGIISGSKRSD 390 LGGGII + R+D Sbjct: 355 ---CLGGGIIEAASRND 368 >gi|254499186|ref|ZP_05111866.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase [Legionella drancourtii LLAP12] gi|254351576|gb|EET10431.1| tRNA (5 methylaminomethyl-2-thiouridylate) methyltransferase [Legionella drancourtii LLAP12] Length = 361 Score = 458 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 121/376 (32%), Positives = 192/376 (51%), Gaps = 27/376 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +++V MSGGVDSSV A LLK GY+V G+ ++ + G C A QD+ DA+ VC+ Sbjct: 4 KIIVGMSGGVDSSVAAWLLKEQGYEVEGLFMKNWEQDDTD---GFCPAAQDLADAQAVCN 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +N+ + ++ E++ V + F S Y G TP P V CN+ +KF+ L+ LGAD + Sbjct: 61 QLNIPLHSVNFSEQYWERVFMHFLSEYEKGRTPNPDVLCNKEIKFNAFLNYALDLGADYI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY ++++ + + D ++DQ+YFL A L FP+GD K +R Sbjct: 121 ATGHYAKNKIS-----NNIGHLLKAKDRDKDQTYFLHAVDPAALAKTLFPIGDYTKPEIR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 + A+++GL K DS ICF+ + ++ +K +A G+I +++G +LG+H+G++ Sbjct: 176 EFAKQLGLVTQAKKDSTGICFIGEKRFKTFLKEFI--LAKPGEIKNMDGSVLGKHDGLMF 233 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313 YT+GQR+GLG+ +P +VV D ++ + V L + I+WL D Sbjct: 234 YTLGQRQGLGIGGTQNSTEDPWYVVDKDVATNTLYVAQGSQHPMLYAQGLICGPIHWLAD 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDS 372 + C+ K R Q + D + YV F + V GQ VFY + Sbjct: 294 CKDNLPLT----CYAKTRYRQAEQGCMISPPDGDLHYVMFSSPQRAVTPGQYIVFYDKN- 348 Query: 373 NEARVLGGGIISGSKR 388 + LGG I R Sbjct: 349 ---QCLGGATIEQIIR 361 >gi|331000512|ref|ZP_08324184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Parasutterella excrementihominis YIT 11859] gi|329571476|gb|EGG53161.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Parasutterella excrementihominis YIT 11859] Length = 388 Score = 458 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 132/376 (35%), Positives = 184/376 (48%), Gaps = 27/376 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 VVV +SGGVDS+V A LLK+ GY+VIG+ ++ + S+ C + QD+ DA V Sbjct: 31 KTVVVGLSGGVDSAVSAYLLKKQGYEVIGLFMKNWEDDDDSE---YCSSRQDLIDATAVA 87 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + ++ + +++ V F S Y+AG TP P V CN +KF L +LGAD Sbjct: 88 DVIGIDIEAVNFAKEYKDRVFAEFLSEYSAGRTPNPDVLCNSEIKFKAFLDHAIRLGADK 147 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R G + + +D +DQSYFL Q QL FP+GDM K V Sbjct: 148 IATGHYARVRERDG-----LFELLKGVDNTKDQSYFLNRLNQYQLSKAMFPVGDMCKTEV 202 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+GL A K DS ICF+ + + + + R A G I +G+I+G H G+ Sbjct: 203 RRIAEEIGLPNAKKKDSTGICFIGERPFREFLHRYLAN--KPGPIKTPDGRIVGEHIGLS 260 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YT+GQR+G+GV GEP FV D ++ + + L+ + NW+ Sbjct: 261 YYTLGQRKGIGVGGSKFGNGEPWFVARKDIPNNTLYIVQGHDHPWLQSFSLSATRPNWIS 320 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 E + G K R V R DD V V V GQ+ VFY + Sbjct: 321 GTAPEAGRMLGL----KTRYRMADQECKVIRTDDESVVVSSLDPLWAVTPGQSAVFYDEE 376 Query: 372 SNEARVLGGGIISGSK 387 LGG II S+ Sbjct: 377 V----CLGGAIIGTSR 388 >gi|297181386|gb|ADI17576.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain-protein [uncultured alpha proteobacterium HF0130_06E21] Length = 454 Score = 458 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 206/396 (52%), Positives = 251/396 (63%), Gaps = 20/396 (5%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 +NSL D+ P + RVVVAMSGGVDSSV AALL GYDV+G+TLQLY+ A+ R + Sbjct: 73 NTMNSLGFDRPPAETRVVVAMSGGVDSSVTAALLHEQGYDVVGITLQLYDHGAATARFKA 132 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 CCAGQD+YDA RV D I HYV DYE RFR VI FA +Y GETP+PCV CN+TVKF Sbjct: 133 CCAGQDIYDAYRVADMIGFPHYVLDYESRFREDVIENFADAYVRGETPIPCVTCNQTVKF 192 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 DL++ R LGAD LATGHYIR + G + R +D RDQSYFLFATT QL Sbjct: 193 RDLVATARDLGADALATGHYIRR-----EAGPGGAELHRAVDASRDQSYFLFATTHDQLD 247 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 LRFPLGDM K+ VR+ AR +GL IA+K DSQDICFV GKY +V+++ G A GDIV Sbjct: 248 FLRFPLGDMPKDQVREHARRLGLAIAEKPDSQDICFVPDGKYAQIVEKLRPGAAEPGDIV 307 Query: 247 HLNGQILGRHNGIINYT-----IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH 301 HLNG +LG H GI+N+T G A + L+VV LD + RVIVGPRE+L Sbjct: 308 HLNGTVLGEHEGILNFTIGQRRGIGIGGRKDADADALYVVRLDPETRRVIVGPREALATS 367 Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVA 360 R+ + +NWLG+G + +G + VKIRS+ +PVP V V+ E GV+ Sbjct: 368 RVPVNGLNWLGEG--DAPPAEGVEVSVKIRSTMEPVPGRVAGISCGAAMVELAMPEFGVS 425 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396 GQA VFY ARVLGGG I +R+D E Sbjct: 426 PGQAAVFYDG----ARVLGGGWI---QRNDERSEGA 454 >gi|255263925|ref|ZP_05343267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thalassiobium sp. R2A62] gi|255106260|gb|EET48934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thalassiobium sp. R2A62] Length = 378 Score = 458 bits (1180), Expect = e-127, Method: Composition-based stats. Identities = 197/386 (51%), Positives = 251/386 (65%), Gaps = 14/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + + LNSL K P D RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A Sbjct: 1 MSLDQ--PLNSLGFAKAPADTRVVVAMSGGVDSSVVAAQLAEEGYDVVGVTLQLYDHGAA 58 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 ++G+CCAG D++DARRV + HYV DYE F+ AVI FA SY AG TP+PC+ C Sbjct: 59 LAKQGACCAGLDIHDARRVAQEMGFPHYVLDYENTFKEAVIDEFADSYLAGATPVPCIRC 118 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL + L AD +ATGHYI+ ++ G + D RDQSYFLF+T Sbjct: 119 NERVKFKDLLETAKDLDADCMATGHYIQRKM-----GDHGAELHCATDANRDQSYFLFST 173 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T QL LRFPLG + K R LA + GL +ADK DSQDICFV G Y V++++ G Sbjct: 174 TLDQLDYLRFPLGHLPSKNETRALAEKYGLSVADKPDSQDICFVPNGNYAAVIEKLRPGA 233 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A GDIV +NG +LG HNG+I+YT+GQRRGLG+ + +PL+VV LD ++ +VIVGP++ L Sbjct: 234 AEPGDIVDINGTVLGTHNGVIHYTVGQRRGLGIGGLADPLYVVKLDVDAKQVIVGPKDML 293 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 I +REINWLGD F+ +V VK+RS++ P V+ + V+ E Sbjct: 294 STRTIPVREINWLGDDAFDASVERNI--MVKVRSTRPPREAIVRPISATEATVELLTPEE 351 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 GV+ GQACVFY+ DS R+LGGG I Sbjct: 352 GVSPGQACVFYSPDS--PRILGGGWI 375 >gi|116619734|ref|YP_821890.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Solibacter usitatus Ellin6076] gi|122255775|sp|Q02BG1|MNMA_SOLUE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|116222896|gb|ABJ81605.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Solibacter usitatus Ellin6076] Length = 371 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 153/378 (40%), Positives = 214/378 (56%), Gaps = 22/378 (5%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK------ASKRKGSCCAGQDV 73 + + VAMSGGVDSSVVAA+L R+G V+G+T+QL+N R+ G CC+ DV Sbjct: 3 EQPIAVAMSGGVDSSVVAAMLVREGRTVVGMTMQLWNQRRLPELAVEGATTGRCCSLDDV 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 YDARRV + + + +YV ++EE+F V+ PF Y AG TP+PC CN +KF L + Sbjct: 63 YDARRVAEQVGIPYYVVNFEEQFEEHVVKPFVDEYLAGRTPIPCTLCNNYIKFDRFLEMA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +GA +ATGHY R R D+ R + R +D +DQ+YFLF TQ QL FPLG Sbjct: 123 DSVGAYHMATGHYARIRH---DEATGRYQLLRAVDDSKDQTYFLFGLTQAQLARTLFPLG 179 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-----EGDIVHL 248 ++ K VRD+AR M L +A K DSQ+ICFV G Y + + G+IV Sbjct: 180 ELNKPEVRDMARSMDLAVAAKGDSQEICFVPNGDYAAFMSAYLKEKGVAVEETSGEIVTT 239 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 +G+ LGRH G+ +T+GQR+GLGVA GEPL+V+ + + +V+VG + L +++ Sbjct: 240 DGRTLGRHEGVHRFTVGQRKGLGVATGEPLYVISTNPANHQVVVGGNDDLLRGGFTAKDV 299 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACV 366 NW+ E + VKIR+ P + + D V V F++++ V GQ V Sbjct: 300 NWISIAGVE--PGAPVRAQVKIRNRHAAAPARLVATSDRDRVEVVFDEAQRAVTPGQGAV 357 Query: 367 FYTSDSNEARVLGGGIIS 384 FY D VLGGG I Sbjct: 358 FYAGD----LVLGGGWIE 371 >gi|119386805|ref|YP_917860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paracoccus denitrificans PD1222] gi|205816904|sp|A1B9H0|MNMA_PARDP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|119377400|gb|ABL72164.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paracoccus denitrificans PD1222] Length = 389 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 190/385 (49%), Positives = 250/385 (64%), Gaps = 14/385 (3%) Query: 3 VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62 + + +NSL K P RVVVAMSGGVDSSVVAA+L GYDVIGVTLQLY+ A Sbjct: 11 AAPYSTVNSLGFPKPPAQTRVVVAMSGGVDSSVVAAMLAAQGYDVIGVTLQLYDHGAALA 70 Query: 63 RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122 +KG+CCAGQD++DARRV + I HYV DYE +FR +VI FA +Y AG TP+PC+ CN Sbjct: 71 KKGACCAGQDIHDARRVAERIGFPHYVLDYENKFRESVIEEFADAYLAGATPVPCIRCNE 130 Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 VKF DLL R+L AD +ATGHYIR + G + + D RDQSYFLF+TTQ Sbjct: 131 RVKFRDLLQTARELDADCMATGHYIRRLM-----GPKGAELHMAADPARDQSYFLFSTTQ 185 Query: 183 QQLCDLRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 +QL LRFPLG + K R LA + GL +ADK DSQDICFV G Y V++++ G A Sbjct: 186 EQLDFLRFPLGGLASKAETRALAAQYGLAVADKPDSQDICFVPNGDYASVIEKLRPGAAD 245 Query: 242 EGDIVHLNGQILGRHNGIINYTIGQ-RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300 G+IV ++G +LG H G+I+YTIGQ R +G+PL+VV L+ ++ RV+VGP+++L Sbjct: 246 PGEIVDMDGNVLGSHRGVIHYTIGQRRGLGIGGLGDPLYVVRLEPDTRRVVVGPKQALAT 305 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGV 359 + + E+NWLGD FED + +IRS++ P P ++ ++ E GV Sbjct: 306 KIVPVTEVNWLGDEPFEDEIA----VTARIRSTRPPRPAILRVTGKHRAEIELLDPEEGV 361 Query: 360 ASGQACVFYTSDSNEARVLGGGIIS 384 + GQACVFY ++ +RVLGGG IS Sbjct: 362 SPGQACVFYATE--GSRVLGGGWIS 384 >gi|303256580|ref|ZP_07342594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderiales bacterium 1_1_47] gi|302860071|gb|EFL83148.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderiales bacterium 1_1_47] Length = 378 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 132/376 (35%), Positives = 184/376 (48%), Gaps = 27/376 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 VVV +SGGVDS+V A LLK+ GY+VIG+ ++ + S+ C + QD+ DA V Sbjct: 21 KTVVVGLSGGVDSAVSAYLLKKQGYEVIGLFMKNWEDDDDSE---YCSSRQDLIDATAVA 77 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + ++ + +++ V F S Y+AG TP P V CN +KF L +LGAD Sbjct: 78 DVIGIDIEAVNFAKEYKDRVFAEFLSEYSAGRTPNPDVLCNSEIKFKAFLDHAIRLGADK 137 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R G + + +D +DQSYFL Q QL FP+GDM K V Sbjct: 138 IATGHYARVRERDG-----LFELLKGVDNTKDQSYFLNRLNQYQLSKAMFPVGDMCKTEV 192 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+GL A K DS ICF+ + + + + R A G I +G+I+G H G+ Sbjct: 193 RRIAEEIGLPNAKKKDSTGICFIGERPFREFLHRYLAN--KPGPIKTPDGRIVGEHIGLS 250 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YT+GQR+G+GV GEP FV D ++ + + L+ + NW+ Sbjct: 251 YYTLGQRKGIGVGGSKFGNGEPWFVARKDIPNNTLYIVQGHDHPWLQSFSLSATRPNWIS 310 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 E + G K R V R DD V V V GQ+ VFY + Sbjct: 311 GTAPEAGRMLGL----KTRYRMADQECKVIRTDDESVVVSSLDPLWAVTPGQSAVFYDEE 366 Query: 372 SNEARVLGGGIISGSK 387 LGG II S+ Sbjct: 367 V----CLGGAIIGTSR 378 >gi|197104258|ref|YP_002129635.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Phenylobacterium zucineum HLK1] gi|196477678|gb|ACG77206.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Phenylobacterium zucineum HLK1] Length = 371 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 197/373 (52%), Positives = 254/373 (68%), Gaps = 7/373 (1%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P R+V AMSGGVDS+V AALL R GYDV+GVTLQLY+ A ++KG+CCAGQD++DAR Sbjct: 4 PAGTRIVAAMSGGVDSTVTAALLARAGYDVVGVTLQLYDHGAAVQKKGACCAGQDIHDAR 63 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + I + HYV DYE RF+ VI FA +Y GETP+PC+ CN+TVKF DLL V R LG Sbjct: 64 TAAEGIGIPHYVLDYESRFKQQVIEDFADAYLRGETPIPCIRCNQTVKFRDLLDVARDLG 123 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A +ATGHY+R + G + R D RDQSYFLFATT +QL LRFPLG M K Sbjct: 124 AQAMATGHYVRR-----EAGAEGPELHRAADPARDQSYFLFATTAEQLDYLRFPLGAMPK 178 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 +VR A E+GL +ADK DSQDICFV +G+Y ++ R+ A GDIVHL+G++LGRH Sbjct: 179 PAVRAAAAELGLAVADKPDSQDICFVPEGRYTTIIDRLRPQGAEPGDIVHLDGRVLGRHE 238 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 G+ YTIGQRRGL VA+G+PLFVV +D ++ +V+VGPRE+L + L+E NW+G G Sbjct: 239 GVTRYTIGQRRGLNVAVGDPLFVVRIDADARQVVVGPREALLTRALGLKETNWIGGGPSI 298 Query: 318 DAVVDGFK-CFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 +A + + ++RS+++PVP + D V F+ E GVA GQACV Y +S R Sbjct: 299 EAACEAGRPVLARVRSTREPVPGRLSLVDGVPGVVFDNPEEGVAPGQACVLYAPESP-TR 357 Query: 377 VLGGGIISGSKRS 389 VLGGG I+G+ R Sbjct: 358 VLGGGFIAGTVRD 370 >gi|260576792|ref|ZP_05844777.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacter sp. SW2] gi|259021044|gb|EEW24355.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacter sp. SW2] Length = 379 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 195/379 (51%), Positives = 251/379 (66%), Gaps = 12/379 (3%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 LNSL L K P++ RVVVAMSGGVDSSVVAA+L +GYDV+GVTLQLY+ A +KG+C Sbjct: 6 PLNSLGLAKPPQETRVVVAMSGGVDSSVVAAMLAEEGYDVVGVTLQLYDHGAALAKKGAC 65 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 CAG+D++DARRV + + HYV DYE FR AVI FA +Y AG TP+PC+ CN VKF Sbjct: 66 CAGRDIHDARRVAEAMGFPHYVLDYENTFRAAVIDEFADAYLAGATPVPCIRCNERVKFK 125 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL+ R+L AD +ATGHYI+ +L G + D RDQSYFLF+TT +QL Sbjct: 126 DLLATARELDADCMATGHYIQRKL-----GLHGPELHSATDPARDQSYFLFSTTAEQLDY 180 Query: 188 LRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 LRFPLG + K R LA GL +ADK DSQDICFV G Y V++++ G A G IV Sbjct: 181 LRFPLGHLASKAETRALAARYGLAVADKPDSQDICFVPNGDYAAVIEKLRPGAAEPGLIV 240 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 L+G LG H G+I+YTIGQRRGLG+ +PL+V+ LD + +V+VGP+ +L R+ L Sbjct: 241 GLDGTPLGEHRGVIHYTIGQRRGLGIGGVADPLYVLRLDPETRQVVVGPKAALSTRRVPL 300 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQA 364 REINWLGD F+ + VK+RS++ P P V+ + V+ E G+++GQA Sbjct: 301 REINWLGDAAFDSQP--EWLLNVKVRSTRPPRPALVRPLSATEAEVELLAPEDGISAGQA 358 Query: 365 CVFYTSDSNEARVLGGGII 383 CVFY + +RVLGGG I Sbjct: 359 CVFYAPE--GSRVLGGGWI 375 >gi|311105115|ref|YP_003977968.1| methyltransferase [Achromobacter xylosoxidans A8] gi|310759804|gb|ADP15253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Achromobacter xylosoxidans A8] Length = 372 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 122/383 (31%), Positives = 174/383 (45%), Gaps = 28/383 (7%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 K+ K RVVV MSGGVDSSV A LLK+ GY+V+G+ ++ + S+ C QD+ Sbjct: 3 QKSTKKGRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQDLL 59 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA V D + V ++ +++ V F Y+AG TP P V CN +KF L Sbjct: 60 DAASVADLVGVEFEFVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAM 119 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGA+ +ATGHY R R G + + + +D +DQSYFL Q QL FPLG+ Sbjct: 120 ALGAEHIATGHYARVREVPAVGGGTQFQLLKALDASKDQSYFLHRLNQAQLSRTMFPLGE 179 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 + K VR +A E+GL A K DS ICF+ + + + + R G I+ GQ +G Sbjct: 180 IHKTEVRRIAHEIGLHNAAKKDSTGICFIGERPFREFLNRYLP--TEPGPIMTPEGQKVG 237 Query: 255 RHNGIINYTIGQR----------RGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVH 301 RH G+ YT+GQR R E +V D + + V L Sbjct: 238 RHEGLSFYTLGQRKGLGVGGVKGRQREDGTAEAWYVARKDLERNVLYVVQGHDHPWLLSG 297 Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVA 360 + ++ +W+ K R Q + D + F + + V Sbjct: 298 ELRAQDASWVAGHAPAAGTYG-----AKTRYRQADAACRLDGAVDGTFSLGFTEPQWAVT 352 Query: 361 SGQACVFYTSDSNEARVLGGGII 383 GQ+ V Y + LGGGII Sbjct: 353 PGQSAVLYDGEV----CLGGGII 371 >gi|319779294|ref|YP_004130207.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Taylorella equigenitalis MCE9] gi|317109318|gb|ADU92064.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Taylorella equigenitalis MCE9] Length = 371 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 118/381 (30%), Positives = 179/381 (46%), Gaps = 29/381 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +VVV +SGGVDSSV A LLK GYDV+GV ++ + S+ C QD D V Sbjct: 3 KPKVVVGLSGGVDSSVSAYLLKEQGYDVLGVFMKNWEDDDDSEF---CSTRQDWIDVVSV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 DT+ + ++ +++ V F Y+AG TP P V CN +KF L GAD Sbjct: 60 ADTLGIDVDAVNFATEYKDRVFSDFLREYSAGRTPNPDVLCNAEIKFKAFLDYAMNTGAD 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R G GK + + +D +DQSYFL Q QL + FP+G++ K Sbjct: 120 FIATGHYARVRAIDGPSGKT-YQLLKGLDPNKDQSYFLHRLNQDQLSKVIFPVGELLKTK 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A ++ L A K DS ICF+ + + + + + G I+ +G+++G H G+ Sbjct: 179 VREIAEKLNLSNAKKKDSTGICFIGERPFREFLNKYLP--TKPGPILTDSGELIGEHVGL 236 Query: 260 INYTIGQRRGLGVAM----------GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLR 306 YTIGQR+G+G+ + +V D ++ + V L ++Y Sbjct: 237 SFYTIGQRKGIGIGGVKSHMSLDGVSDAWYVARKDMKNNTLYVVNGHDHPWLLSKKLYAL 296 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQAC 365 + +W+ + K R Q ++ + F + + V GQ+ Sbjct: 297 DASWINEYTPSIG-----TYAAKTRYRQADASCELEFAQGLEFKLKFSEDQWAVTPGQSA 351 Query: 366 VFYTSDSNEARVLGGGIISGS 386 V Y D LGGGII S Sbjct: 352 VLYDGDV----CLGGGIIEQS 368 >gi|126726432|ref|ZP_01742273.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacterales bacterium HTCC2150] gi|126704295|gb|EBA03387.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacterales bacterium HTCC2150] Length = 377 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 192/383 (50%), Positives = 250/383 (65%), Gaps = 12/383 (3%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 T LNSL K P D RVVVAMSGGVDSSVVAA+L GYDV+GVTLQLY+ A +KG+ Sbjct: 4 TPLNSLGFAKAPADTRVVVAMSGGVDSSVVAAVLAEQGYDVVGVTLQLYDHGAALAKKGA 63 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 CCAG+D++DARRV +T+ HYV DYE +F+ AVI FA SY AG TP+PC+ CN VKF Sbjct: 64 CCAGRDIHDARRVAETMGFPHYVLDYENKFKEAVIDEFADSYLAGATPVPCIRCNERVKF 123 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 DLL + L AD +ATGHYI+ + G + + + D RDQSYFLF+T Q QL Sbjct: 124 KDLLETAKDLDADCMATGHYIQRMM-----GDTKAELHQAADGNRDQSYFLFSTKQDQLD 178 Query: 187 DLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 LRFPLG + K R LA + GL +ADK DSQDICFV G Y V++++ G A GDI Sbjct: 179 YLRFPLGHLTSKAETRALAAKYGLPVADKPDSQDICFVPNGNYAAVIEKLRPGSAEPGDI 238 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 V +G ILG HNG+I+YTIGQRRGLG+ + +PL+VV LD + +V+VG +E L + Sbjct: 239 VDTDGNILGAHNGVIHYTIGQRRGLGIGGLADPLYVVRLDVDKRQVVVGAKELLATRTVP 298 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363 L EINWLGD D + V++RS++ P ++ ++ V+ +E G+++GQ Sbjct: 299 LGEINWLGDEPL--MSRDEWHLDVRVRSTRPPRGAVLRPISETTATVELITAEEGISAGQ 356 Query: 364 ACVFYTSDSNEARVLGGGIISGS 386 ACVFY D+ R+ GGG I + Sbjct: 357 ACVFY--DTESTRIFGGGWIKKA 377 >gi|152978287|ref|YP_001343916.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus succinogenes 130Z] gi|205811095|sp|A6VLY4|MNMA_ACTSZ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|150840010|gb|ABR73981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinobacillus succinogenes 130Z] Length = 389 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 131/392 (33%), Positives = 205/392 (52%), Gaps = 29/392 (7%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 +L L +N K ++V+V MSGGVDSSV A +L++ GY V G+ ++ + + Sbjct: 17 PKLTPGQLAENGK-IKVIVGMSGGVDSSVSAFILQQQGYQVEGLFMKNWEEDDDTD---Y 72 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C A D+ DA+ VCD + + + ++ + + V F S Y AG TP P + CN+ +KF Sbjct: 73 CTAAADLADAQAVCDKLGIRLHKINFATEYWDNVFEHFLSEYKAGRTPNPDILCNKEIKF 132 Query: 127 SDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 L LGAD +ATGHY+R D + R +D +DQSYFL A +++Q+ Sbjct: 133 KAFLEYAAEDLGADYIATGHYVRRSGPDHD-----AHLLRGLDNNKDQSYFLHALSKKQV 187 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FP+G+++K VR +A E+GL A K DS ICF+ + K+ D + R A GDI Sbjct: 188 GQSLFPVGEVEKTVVRAVAEELGLITAKKKDSTGICFIGERKFKDFLARFLP--AQPGDI 245 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVGPRES--- 297 G+++GRH G++ +T+GQR+GLG+ + +VV D ++ ++V Sbjct: 246 KTTEGEVIGRHQGLMYHTLGQRKGLGIGGIKGKDENAWYVVEKDLKNNVLVVAQGHDNSA 305 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSE 356 L+ + +++ W+ E + C VK R Q + V NDD V V F++ + Sbjct: 306 LQSSGLIAKQLTWVS----EQPLRKTLHCTVKTRYRQTDIACEVVPVNDDTVEVHFDEPQ 361 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIISGSKR 388 + V GQ+ VFY + LGGGII + Sbjct: 362 IAVTPGQSAVFYQGE----ECLGGGIIETQIK 389 >gi|163747144|ref|ZP_02154500.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oceanibulbus indolifex HEL-45] gi|161379705|gb|EDQ04118.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oceanibulbus indolifex HEL-45] Length = 380 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 186/386 (48%), Positives = 245/386 (63%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + + LNSL K P D RVVVAMSGGVDSSVVAA+L +GYDV+GVTLQLY+ A Sbjct: 1 MALDQTPPLNSLGFAKAPADTRVVVAMSGGVDSSVVAAMLADEGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG D+ DARRV + + HYV DYE F++AVI FA SY G TP+PC+ C Sbjct: 61 LAKKGACCAGVDIQDARRVAEEMGFPHYVLDYENVFKDAVIDEFADSYLGGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL + L AD +ATGHYI+ ++ G+ + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETAKDLEADCMATGHYIQRKM-----GENGPELHAAADGNRDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T++QL LRFPLG + K+ R LA + GL +ADK DSQDICFV G Y V++++ Sbjct: 176 TEEQLDYLRFPLGHLPSKDDTRALAAKYGLVVADKPDSQDICFVPNGDYAAVIRKLRPEA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IV G +L +H G+I+YTIGQRRGLG+ + +PL+VV LD V+VGP+ L Sbjct: 236 ADPGNIVDTEGNVLAKHEGVIHYTIGQRRGLGIGGLADPLYVVKLDAERKEVVVGPKSML 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 +I +REINWLGD + V++RS++ P ++ + V+ +E Sbjct: 296 ATRKIPVREINWLGDEPLTSR--SEWNITVRVRSTRPPRDAILRPISATEAEVELLTAEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 GV+ GQACVFY +S R+ GGG I Sbjct: 354 GVSPGQACVFYDPES--TRIFGGGWI 377 >gi|261377622|ref|ZP_05982195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria cinerea ATCC 14685] gi|269146376|gb|EEZ72794.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria cinerea ATCC 14685] Length = 367 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 120/381 (31%), Positives = 189/381 (49%), Gaps = 24/381 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + C QD Sbjct: 1 MNTTANTTNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 58 FDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 GAD++ATGHY R + G + + +D +DQSYFL+ QL FPLG Sbjct: 118 IDQGADIIATGHYARKEVRNGT-----HYLLKGLDQNKDQSYFLYRLKPFQLERAIFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ + Sbjct: 173 GLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G+H G++ YT+GQR+GLG+ GEP FV D + +IV L + + +++ Sbjct: 231 GKHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 + ++ + K R P ++ +D+ V + F++S+ V GQ+ V Y Sbjct: 291 FTLPERPKEG-----RYTCKTRYRMVDAPCELRYLDDETVELVFDESQWAVTPGQSAVLY 345 Query: 369 TSDSNEARVLGGGIISGSKRS 389 D LGGGII + + Sbjct: 346 EGDV----CLGGGIIQSTDKP 362 >gi|160871950|ref|ZP_02062082.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsiella grylli] gi|159120749|gb|EDP46087.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsiella grylli] Length = 361 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 120/376 (31%), Positives = 180/376 (47%), Gaps = 27/376 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K RV+V +SGGVDSSV A LLK GY V G+ ++ + + C A D+ DA+ Sbjct: 2 KKKRVMVGLSGGVDSSVAALLLKEQGYQVEGLFMKNWEEDD---TEVYCSASTDIADAQA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 +CD + + ++ + NAV + F + Y G TP P + CN+ +KF L GA Sbjct: 59 ICDKLAIPLRTINFAAEYWNAVFMHFLAEYRRGRTPNPDILCNKEIKFKAFLQYALHTGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + + D +DQ+YFL+ Q L FPL + K Sbjct: 119 DFIATGHYAHKSFQ-----NNMYQLLQCADKNKDQTYFLYTLGQHPLAHTLFPLARLTKS 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A+ G A K DS ICF+ + K+ ++ G I L G+ +G+H+G Sbjct: 174 EVRAIAQSKGFVNATKKDSTGICFIGERKFKRFLQTYLPL--QPGPIETLEGETVGQHDG 231 Query: 259 IINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 ++ YTIGQR+GLG+ +G P +VV N + +IV +L + +++W Sbjct: 232 LMYYTIGQRQGLGIGGQREKLGVPWYVVDKKLNHNALIVVQGKEHPALFSSNLICTDLHW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + E + C KIR Q P +Q +D +V F+ + + GQ+ VFY Sbjct: 292 VN----ECPLTLPLNCAAKIRYRQLETPCLIQPCANDAYHVRFKIPQRAITIGQSIVFYQ 347 Query: 370 SDSNEARVLGGGIISG 385 LGGGII Sbjct: 348 G----PVCLGGGIIDA 359 >gi|83593359|ref|YP_427111.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodospirillum rubrum ATCC 11170] gi|123526416|sp|Q2RSS1|MNMA_RHORT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|83576273|gb|ABC22824.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodospirillum rubrum ATCC 11170] Length = 377 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 189/384 (49%), Positives = 244/384 (63%), Gaps = 12/384 (3%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSC 67 ++ L P RVVVAMSGGVDSSV AALLK G+DV+G+T++LY+ K +C Sbjct: 1 MSQTPLSPPPVGGRVVVAMSGGVDSSVTAALLKEQGHDVVGLTMRLYDHGKPLGPGARTC 60 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 CAGQD++DARRV D + ++HYV DYE RFR VI PFA+SY GETP+PCV CN+TVKF Sbjct: 61 CAGQDIHDARRVADRLGIAHYVLDYESRFREDVIEPFAASYGRGETPIPCVLCNQTVKFR 120 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL+ LG LATGHY+R DG + R +D RDQSYFLFATT+ QL Sbjct: 121 DLLAAALDLGGTALATGHYVRRL-----DGPEGPRLYRAVDPGRDQSYFLFATTKGQLGR 175 Query: 188 LRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 L FPLG M K+ R +AR +GL + DK DSQDICFV G Y VV+R+ G+ G+IV Sbjct: 176 LLFPLGAMASKDETRAIARRLGLAVGDKPDSQDICFVPDGDYAKVVERLRPGVVEAGEIV 235 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 L+G +LG H G+I++T+GQRRG+G+ EPL+V+ LD + R++VGP +L I + Sbjct: 236 DLDGTVLGHHPGLIHFTVGQRRGVGIGGSAEPLYVIALDTATHRLVVGPHAALARREIAV 295 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQ 363 +NWLG+G E G + +KIR + P P + V ++ GVA GQ Sbjct: 296 SGLNWLGEG--EGPASAGTRARIKIRHASPPFPGQIFPGAAAGEARVVLDEPAHGVAPGQ 353 Query: 364 ACVFYTSDSNEARVLGGGIISGSK 387 A VFY D N+ARVLGGG I S+ Sbjct: 354 AAVFYGLDDNDARVLGGGWIGASR 377 >gi|89895170|ref|YP_518657.1| hypothetical protein DSY2424 [Desulfitobacterium hafniense Y51] gi|122482441|sp|Q24US9|MNMA_DESHY RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|89334618|dbj|BAE84213.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 370 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 145/376 (38%), Positives = 202/376 (53%), Gaps = 23/376 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + +VVV MSGGVDSS+ AALLK +GY+VIG+TLQ S G CC+ + DARR Sbjct: 5 EKKKVVVGMSGGVDSSMAAALLKEEGYEVIGITLQTMPSG-GPDDVGGCCSITAIDDARR 63 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + HYV ++ F VI F ++Y +GETP PC CNR V++ + L R LGA Sbjct: 64 VAHQLGIPHYVLNFRTIFDENVIDYFTNAYLSGETPNPCTMCNRVVRWGEFLRKARALGA 123 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY + + D R + RP D +DQ+Y L+ TQ QL FPL D KKE Sbjct: 124 DYLATGHYAK---VLQDPQSGRCFLSRPTDTWKDQTYMLYNLTQDQLKHTLFPLADYKKE 180 Query: 199 SVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 +R++A E GL ++ K DSQ+ICF+ Y ++ + G+ V G ILGRH Sbjct: 181 HIREMAAERGLLRVSRKPDSQEICFIPDDDYVSFIRERSPEKIKPGNFVDRQGNILGRHQ 240 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 G+INYT+GQR+GLGV G+P+FV+ + + VI+G + + H + ++NW+ E Sbjct: 241 GLINYTVGQRKGLGVTFGKPMFVLGFNVEGNEVILGEDQEVYAHTLLATDLNWIAIPGVE 300 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG----------VYVDFEKSEVGVASGQACVF 367 + KIR + D V V+F + + GQA VF Sbjct: 301 GPLT----VQAKIRYKAPLAEAKIIPLKDSETLPGAIGPVVRVEFTTPQRAITPGQAVVF 356 Query: 368 YTSDSNEARVLGGGII 383 Y + V+GGG I Sbjct: 357 YQGE----LVVGGGKI 368 >gi|82703361|ref|YP_412927.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosospira multiformis ATCC 25196] gi|123544047|sp|Q2Y6T6|MNMA_NITMU RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|82411426|gb|ABB75535.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrosospira multiformis ATCC 25196] Length = 363 Score = 458 bits (1178), Expect = e-126, Method: Composition-based stats. Identities = 123/375 (32%), Positives = 181/375 (48%), Gaps = 27/375 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ + + C + QD+ DA V D Sbjct: 5 RVVVGMSGGVDSSVAALLLKQQGYEVIGLFMKNWEDDDTDE---YCSSRQDLIDAASVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + ++ ++ V F + Y AG TP P V CN +KF L LGAD + Sbjct: 62 VIGIPLEAVNFSAEYKERVFSHFLAEYKAGRTPNPDVLCNAEIKFKAFLDHAAGLGADYI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + R + + + D +DQSYFL+ Q QL FP+G + K VR Sbjct: 122 ATGHYAQVR-----NTDGVFQLLKGEDGTKDQSYFLYRLNQAQLSRALFPIGHLYKRDVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A++ GL K DS ICF+ + + + + R G+I +G ++GRH G++ Sbjct: 177 SIAKDHGLPNFSKKDSTGICFIGERPFREFLNRYLPND--PGEIRTPSGDVMGRHAGLMY 234 Query: 262 YTIGQRR-----GLGVAMGEPLFVVYLDKNSS--RVIVGP-RESLEVHRIYLREINWLGD 313 YTIGQR+ G GEP FV D + V+ G L + ++ W+ Sbjct: 235 YTIGQRQGLGIGGTRGGDGEPWFVSEKDVKRNVLTVVQGHDHPDLLRPALAATDLTWVSG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDS 372 + V KIR Q P + D + ++F + + VA GQ+ V Y Sbjct: 295 KMPRCNWV----YAAKIRYRQSDAPCSITYLDCNKCKIEFAQPQWAVAPGQSVVVY---- 346 Query: 373 NEARVLGGGIISGSK 387 LGGG+I+ ++ Sbjct: 347 ESKVCLGGGVIAATQ 361 >gi|227824500|ref|ZP_03989332.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226904999|gb|EEH90917.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 357 Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 142/364 (39%), Positives = 208/364 (57%), Gaps = 11/364 (3%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+ ++AMSGGVDSSV A L+ GY+ +G T++LYN+ A +CC+ +DV DAR V Sbjct: 1 MKALIAMSGGVDSSVAAKLMLDQGYECVGCTMKLYNNPDAGCSSKTCCSIRDVEDARSVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + ++VF+Y + FR V+ FA SY G+TP PC+DCN+ +KF L ++LG D Sbjct: 61 VRLGMPYFVFNYMDEFRRDVMETFARSYTLGKTPNPCIDCNKFLKFGALYERAKELGCDT 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 + TGHY R R G + R D ++DQSY L+ TQ+QL +FPLGD +K Sbjct: 121 IVTGHYARIRKRNG-----CYELLRAKDPKKDQSYVLYNLTQEQLAHTQFPLGDYEKTHT 175 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A E G + K DSQDICFV G Y + V+RI + G + L+G+ +G H GII Sbjct: 176 REIAEESGFINSHKPDSQDICFVPNGTYTEAVQRILSYEPQPGPFLTLDGKEIGTHKGII 235 Query: 261 NYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YTIGQ + LG+ + PL+V+ +D + VIVGP ++L ++E NW+ + + Sbjct: 236 YYTIGQHKKLGLPQPDGPLYVIAIDPKKNAVIVGPSQALFRRDAAVKEANWISGKVPD-- 293 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 F C VK+R Q+ P V D + F++ + + GQ+ V Y V+ Sbjct: 294 --APFACLVKVRYRQEAQPAIVTPTGSDTFSILFDEPQRAITPGQSAVLYGLGDETDVVI 351 Query: 379 GGGI 382 GGGI Sbjct: 352 GGGI 355 >gi|326577507|gb|EGE27387.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis O35E] Length = 392 Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 131/386 (33%), Positives = 201/386 (52%), Gaps = 28/386 (7%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K PKD++V+V MSGGVDSSV A LL++ G+ V G+ ++ + S+ C A D+ D Sbjct: 15 KAPKDIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSE---YCTAMTDLAD 71 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR- 134 A+ V D I + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 72 AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131 Query: 135 ---QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R G + + R +D +DQSYFL A ++ FP Sbjct: 132 PQFGLGADFIATGHYARR----GFSQDGKAQLLRGLDANKDQSYFLHAVGGDKIAKTLFP 187 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 +G+++K VR +A++ L A+K DS ICF+ + K+ D +++ A +GDI +G Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRES---LEVHRI 303 +G H+G++ YTIGQR G+G+ EP FV++ D ++R+IVG L+ + Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSTEL 305 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVA 360 +++W + GF+C K R Q V D V V F+ ++ V Sbjct: 306 TAYKLDWGIAPPVQIFGEQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFDDAQRAVT 365 Query: 361 SGQACVFYTSDSNEARVLGGGIISGS 386 GQ+ VFY D LGGG+I G+ Sbjct: 366 QGQSVVFYDGDI----CLGGGVIDGT 387 >gi|254805310|ref|YP_003083531.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis alpha14] gi|254668852|emb|CBA06922.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis alpha14] gi|319410773|emb|CBY91158.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis WUE 2594] gi|325140698|gb|EGC63213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis CU385] Length = 367 Score = 457 bits (1177), Expect = e-126, Method: Composition-based stats. Identities = 121/381 (31%), Positives = 186/381 (48%), Gaps = 24/381 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + C QD Sbjct: 1 MNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 58 FDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 GAD +ATGHY R + G + + +D +DQSYFL+ QL FPLG Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ + Sbjct: 173 GLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G H G++ YT+GQR+GLG+ GEP FV D + +IV L + + +++ Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 + L E + C K R P ++ +D+ + F++ + V GQ+ V Y Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELRYLDDETAELVFDEPQWAVTPGQSAVLY 345 Query: 369 TSDSNEARVLGGGIISGSKRS 389 D LGGGII + + Sbjct: 346 DGDI----CLGGGIIQTTDKP 362 >gi|91205346|ref|YP_537701.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia bellii RML369-C] gi|157826947|ref|YP_001496011.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia bellii OSU 85-389] gi|122425762|sp|Q1RJ52|MNMA_RICBR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|166235077|sp|A8GVU7|MNMA_RICB8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|91068890|gb|ABE04612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia bellii RML369-C] gi|157802251|gb|ABV78974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia bellii OSU 85-389] Length = 367 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 180/373 (48%), Positives = 244/373 (65%), Gaps = 13/373 (3%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ N + +VVAMSGGVDSSVVA +L GY+VIG+TLQLY+ A+ +K +CCAGQD+ Sbjct: 2 INSNDRQSTLVVAMSGGVDSSVVAGILCEQGYNVIGITLQLYDHGMATAKKNACCAGQDI 61 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 YDA+ V + + + HYV DYE +F+ +VI F SY GETPLPCV CN++VKF DL+ Sbjct: 62 YDAKMVANKLGMPHYVLDYESKFKESVIDNFVDSYLRGETPLPCVQCNKSVKFRDLIKTA 121 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 ++LGAD L TGHY+R GD+G + +D +DQSYFLFATT++QL L FPLG Sbjct: 122 KELGADKLVTGHYVRK--INGDNGPE---LHMGLDPLKDQSYFLFATTKEQLEYLDFPLG 176 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 + K+ R LA + GL++ADK DSQDICFV G Y +V+ +I + G I+H+NG L Sbjct: 177 ALTKDETRKLASKFGLEVADKPDSQDICFVPDGNYKNVINKIRPNASESGKILHINGFEL 236 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G H+GIINYTIGQRRGLG++ EPL+V+ +D NS+ V VGP +L V ++++NWL Sbjct: 237 GTHSGIINYTIGQRRGLGISYHEPLYVIKIDPNSNIVYVGPESALNVQEFVIKDVNWLAG 296 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 L + + + VK+RS++ P + + D + V F E VA GQACV Y Sbjct: 297 SLKDG---EKLEVSVKVRSTRPPRLAEISKLEGDRMKVKFLSEEKAVAPGQACVIYDG-- 351 Query: 373 NEARVLGGGIISG 385 RVLGGG I+ Sbjct: 352 --TRVLGGGWITR 362 >gi|205822290|sp|Q122U9|MNMA_POLSJ RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 401 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 120/398 (30%), Positives = 187/398 (46%), Gaps = 42/398 (10%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 +DK R+VV +SGGVDS+V A LLK+ G++VIG+ ++ + S+ C + D Sbjct: 1 MDKQHSKQRIVVGLSGGVDSAVTAYLLKQQGHEVIGIFMKNWEDDDDSE---YCSSNIDF 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA V D I + ++ +++ V F Y AG TP P + CN +KF L Sbjct: 58 VDAAAVADVIGIEIEHVNFAADYKDRVFAEFLREYQAGRTPNPDILCNAEIKFKAFLDHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +LGA+ +ATGHY R R ++ + + +D +DQSYFL Q QL FP+G Sbjct: 118 MRLGAEKIATGHYARVRR---NESTGLHELLKGLDPAKDQSYFLHRLNQAQLSKTLFPVG 174 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++ K VR +A E+GL A K DS ICF+ + + D + R A G I + G++L Sbjct: 175 ELHKTEVRRIADEIGLPNAKKKDSTGICFIGERPFRDFLNRYIAKA--PGPIKNDRGRVL 232 Query: 254 GRHNGIINYTIGQRRGLGVAM---------------------GEPLFVVYLDKNSSRVIV 292 G+H G+ YT+GQR+GLG+ EP FV D +++ + V Sbjct: 233 GKHVGLSFYTLGQRQGLGIGGVKARGAELKAAQARGQRGVGEHEPWFVARKDLDTNTLWV 292 Query: 293 GP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGV 348 L+ + ++ +W+ ++ K R Q ++ Sbjct: 293 VQGHDHPWLQSTVLSAQDCSWVAGTAPAAGLMA-----AKTRYRQVDATCELRSATTANC 347 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 + F + + V GQ+ V Y D LGGG+I+ S Sbjct: 348 ELVFAEPQWAVTPGQSAVLYQGDV----CLGGGVIAAS 381 >gi|77919454|ref|YP_357269.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pelobacter carbinolicus DSM 2380] gi|123573968|sp|Q3A3F8|MNMA_PELCD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|77545537|gb|ABA89099.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pelobacter carbinolicus DSM 2380] Length = 352 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 154/367 (41%), Positives = 211/367 (57%), Gaps = 19/367 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ ++VAMSGGVDS+V AALL G+ V GVT+++++ ++ G + DAR+ Sbjct: 4 KNKHILVAMSGGVDSTVAAALLLAQGHQVSGVTMRVWD----TEPLGDGREPAHIRDARK 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + +V D E F V+ PF Y +G TP PCV CNR KFS LL +LGA Sbjct: 60 VAFDLGIPLHVVDLREEFLQQVVTPFCEEYLSGRTPNPCVLCNRVFKFSRLLREADRLGA 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY R + G +++ + + ++DQSYFLF TQQQL + FPLG+M KE Sbjct: 120 DALATGHYARIVEHDG-----LKVLAKGSNRQKDQSYFLFTLTQQQLQRVVFPLGEMSKE 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR A +GL +A K DSQDICF+ G Y ++R + EG IVH++G+ LG+H G Sbjct: 175 EVRTHAERLGLHVAQKGDSQDICFIPDGDYIGFLERQSHATDTEGSIVHVSGKRLGKHRG 234 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 +T+GQRRGLG+A EPL+VV +D +VIVG +E L V R+ NW+ Sbjct: 235 AYRFTVGQRRGLGIAWPEPLYVVAIDAAKKQVIVGEKEHLHVDRLVTTGTNWIV-----A 289 Query: 319 AVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + +IR P V +D V V F++ + GV+ GQA VFY D RV Sbjct: 290 QPQQPLQARCRIRYRHQEAPCTLVVLGNDRVEVRFDEPQSGVSPGQAAVFYDED----RV 345 Query: 378 LGGGIIS 384 LGGG I+ Sbjct: 346 LGGGWIA 352 >gi|194097878|ref|YP_002000923.1| tRNA-specific 2-thiouridylase MnmA [Neisseria gonorrhoeae NCCP11945] gi|239998356|ref|ZP_04718280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae 35/02] gi|240016919|ref|ZP_04723459.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae FA6140] gi|240079741|ref|ZP_04724284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae FA19] gi|240116431|ref|ZP_04730493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae PID18] gi|240122374|ref|ZP_04735330.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae PID332] gi|240125108|ref|ZP_04737994.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|254494442|ref|ZP_05107613.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae 1291] gi|260441652|ref|ZP_05795468.1| tRNA-specific 2-thiouridylase MnmA [Neisseria gonorrhoeae DGI2] gi|268594219|ref|ZP_06128386.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae 35/02] gi|268595888|ref|ZP_06130055.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae FA19] gi|268602098|ref|ZP_06136265.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae PID18] gi|268680964|ref|ZP_06147826.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae PID332] gi|268683706|ref|ZP_06150568.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|291045029|ref|ZP_06570737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae DGI2] gi|193933168|gb|ACF28992.1| Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae NCCP11945] gi|226513482|gb|EEH62827.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae 1291] gi|268547608|gb|EEZ43026.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae 35/02] gi|268549676|gb|EEZ44695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae FA19] gi|268586229|gb|EEZ50905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae PID18] gi|268621248|gb|EEZ53648.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae PID332] gi|268623990|gb|EEZ56390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae SK-92-679] gi|291011032|gb|EFE03029.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae DGI2] gi|317163647|gb|ADV07188.1| tRNA-specific 2-thiouridylase MnmA [Neisseria gonorrhoeae TCDC-NG08107] Length = 383 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 122/383 (31%), Positives = 187/383 (48%), Gaps = 24/383 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + + C Q Sbjct: 15 LRMNTTSNTSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWENDDNDE---YCSIKQ 71 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 72 DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 131 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 132 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 186 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 187 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGK 244 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 +G H G++ YT+GQR+GLG+ GEP FV D + +IV L + + + Sbjct: 245 TIGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMND 304 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACV 366 +++ L E + C K R P + +D+ + F++ + V GQ+ V Sbjct: 305 LSFT---LPERPKAGRYTC--KTRYRMADAPCELCYLDDETAELVFDEPQWAVTPGQSAV 359 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 Y D LGGGII + + Sbjct: 360 LYDVDI----CLGGGIIQTTDKP 378 >gi|217969633|ref|YP_002354867.1| tRNA-specific 2-thiouridylase MnmA [Thauera sp. MZ1T] gi|217506960|gb|ACK53971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thauera sp. MZ1T] Length = 365 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 126/378 (33%), Positives = 185/378 (48%), Gaps = 29/378 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+VVV MSGGVDS+V A LLKR GY V G+ ++ + S+ C QD+ D VC Sbjct: 1 MKVVVGMSGGVDSAVTALLLKRQGYQVTGLFMKNWEDDDDSE---YCSTRQDLVDVASVC 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + V ++ +++ V F Y AG TP P V CN +KF L QLGA+ Sbjct: 58 DVIGIDLEVVNFSAEYKDRVFADFLHEYEAGRTPNPDVLCNSEIKFRCFLDHAMQLGAER 117 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + R + +DG+ + + D +DQSYFL+ Q+QL FPLG + K V Sbjct: 118 IATGHYAQVREWA-NDGRSEYQLLKAEDGTKDQSYFLYRLNQEQLAKTMFPLGALYKREV 176 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259 R +A E GL +A+K DS ICF+ + + + + R G+I L +G++LG H G+ Sbjct: 177 RRIAAEAGLHVAEKKDSTGICFIGERPFREFLMRYLP--TRPGEIRALDDGRVLGEHQGL 234 Query: 260 INYTIGQRRGLGVAM----------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 + +TIGQR+GL + E +V D ++ + V +L R+ Sbjct: 235 MYHTIGQRKGLHIGGLKGNQDEAGEHEAWYVAGKDVKANVLYVVQGHAHPALLKDRLVAG 294 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQAC 365 ++NW+ V K R P + + D + F + + V GQ+ Sbjct: 295 DLNWIAGRDPHSHWV----YTAKPRYRTPDQPCEIDRIVDGRAEIAFAQPQWAVTPGQSV 350 Query: 366 VFYTSDSNEARVLGGGII 383 V Y LGGGII Sbjct: 351 VVY----ESKVCLGGGII 364 >gi|254451424|ref|ZP_05064861.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Octadecabacter antarcticus 238] gi|198265830|gb|EDY90100.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Octadecabacter antarcticus 238] Length = 379 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 196/379 (51%), Positives = 250/379 (65%), Gaps = 12/379 (3%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 LNSL K P RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A +KG+C Sbjct: 6 PLNSLGFAKPPSQTRVVVAMSGGVDSSVVAAQLAEEGYDVVGVTLQLYDHGAALAKKGAC 65 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 CAG+D++DARRV + + HYV DYE FR AVI FA SY AG TP+PC+ CN VKF Sbjct: 66 CAGRDIHDARRVAEDMGFPHYVLDYENTFREAVIDEFADSYLAGATPVPCIRCNERVKFK 125 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL + L AD +ATGHYI+ ++ G R + D RDQSYFLF+T +QL Sbjct: 126 DLLETAKDLDADCMATGHYIQRKM-----GARGAELHCAEDANRDQSYFLFSTKPEQLDY 180 Query: 188 LRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 LRFPLG + K++ R+LAR+ GL +ADK DSQDICFV G Y V++++ G A GDIV Sbjct: 181 LRFPLGHLPSKDATRELARKYGLALADKPDSQDICFVPNGNYAAVIEKLRPGAAEPGDIV 240 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 +G +L +H G+I+YTIGQRRGLG+ + +PL+VV LD + VIVGP+E L + + Sbjct: 241 DTDGSVLAQHRGVIHYTIGQRRGLGIGGLADPLYVVKLDVDKKHVIVGPKEMLTTRTVPV 300 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQA 364 REINWLGD F+ V VKIRS++ P+ V+ + ++ E GVA GQA Sbjct: 301 REINWLGDDAFD--AVAERHISVKIRSTKPPMEAIVRPLSATTAEIELLTPEEGVAPGQA 358 Query: 365 CVFYTSDSNEARVLGGGII 383 CVFY +DS +R+ GGG I Sbjct: 359 CVFYDNDS--SRIFGGGWI 375 >gi|168179339|ref|ZP_02614003.1| tRNA -methyltransferase [Clostridium botulinum NCTC 2916] gi|226950335|ref|YP_002805426.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum A2 str. Kyoto] gi|182669769|gb|EDT81745.1| tRNA -methyltransferase [Clostridium botulinum NCTC 2916] gi|226844215|gb|ACO86881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A2 str. Kyoto] Length = 353 Score = 456 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 127/364 (34%), Positives = 205/364 (56%), Gaps = 19/364 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V +AMSGGVDSSV A +LK GYDVIG+ + L+ + C DARRV + Sbjct: 6 VALAMSGGVDSSVSAYILKERGYDVIGIYMDLWRDEREE-----YCNKSAAEDARRVAEK 60 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 +++ +V + E++F++ VI F Y +G TP PCV CN+T+KF + ++ GAD +A Sbjct: 61 LDIPFHVINIEKKFKDNVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEFGADFMA 120 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ R+++ + D ++DQ+Y ++ Q QL P G+ KK+ +R+ Sbjct: 121 TGHYCKI-----EERNGRKVIVKAEDDKKDQTYMMYNLKQYQLERTIMPCGEYKKDHIRE 175 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A +GLD+ +K DSQ+ICF+ + +KR EG+ V G I+G+H GII Y Sbjct: 176 IAESIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKRKISEGNFVDKEGNIIGKHKGIIYY 235 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A+G+P +V+ ++ ++ V++G E + + +++N++ D + Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGEEEDIFRTELIAKDVNFI----PFDKLEK 291 Query: 323 GFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + K+R S P + ++ V V FE + + GQ+ VFY D GGG Sbjct: 292 PMELEAKVRYSAKPSKATIIPLENNKVKVVFENKQRAITKGQSVVFYDKDILA----GGG 347 Query: 382 IISG 385 II G Sbjct: 348 IIEG 351 >gi|187778511|ref|ZP_02994984.1| hypothetical protein CLOSPO_02106 [Clostridium sporogenes ATCC 15579] gi|187772136|gb|EDU35938.1| hypothetical protein CLOSPO_02106 [Clostridium sporogenes ATCC 15579] Length = 353 Score = 456 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 128/364 (35%), Positives = 205/364 (56%), Gaps = 19/364 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V +AMSGGVDSSV A +LK GYDVIG+ + L+ + C DARRV + Sbjct: 6 VALAMSGGVDSSVSAYILKERGYDVIGIYMDLWRDEREE-----YCNKSASEDARRVAEK 60 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 +N+ +V + E++F++ VI F Y +G TP PCV CN+T+KF + ++ GAD +A Sbjct: 61 LNIPFHVINIEKKFKDNVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEFGADFMA 120 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ R+++ + D ++DQ+Y ++ Q QL P G+ KK+ +R+ Sbjct: 121 TGHYCKI-----EERNERKVIVKAEDDKKDQTYMMYNLKQYQLDRTIMPCGEYKKDHIRE 175 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A +GLD+ +K DSQ+ICF+ + +KR EG+ V G I+G+H GII Y Sbjct: 176 IAESIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKRKISEGNFVDKEGNIIGKHKGIIYY 235 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A+G+P +V+ ++ ++ V++G E + + +++N++ D + Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGEEEDIFRTELIAKDVNFI----PFDKLEK 291 Query: 323 GFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + K+R S P + ++ V V FE + + GQ+ VFY D GGG Sbjct: 292 PMELEAKVRYSAKPSKATIIPLENNKVKVVFENKQRAITKGQSVVFYDKDVLA----GGG 347 Query: 382 IISG 385 II G Sbjct: 348 IIEG 351 >gi|306821577|ref|ZP_07455175.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550322|gb|EFM38315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 371 Score = 456 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 117/372 (31%), Positives = 192/372 (51%), Gaps = 26/372 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +V++ MSGGVDSSV A +LK GYDV G+ ++ ++ + C A QD D R+V Sbjct: 5 KKKVILGMSGGVDSSVAAVILKEQGYDVTGIFMKNWDDKNDD----MCTAKQDYDDVRKV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D++ + +Y ++E+++ + V F Y G TP P V CN+ +KF L +L AD Sbjct: 61 ADSLGIDYYTVNFEKQYWDEVFTYFLDEYKKGRTPNPDVMCNQEIKFKAFLDYALKLDAD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +A GHY R ++ + + R +D +DQ+YFL Q+ L FP+G+++K Sbjct: 121 CIAMGHYARV-----EEKDGKFYLKRAVDNNKDQTYFLSRIGQKALSKTIFPIGEIEKSK 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258 VR++A+E L A K DS ICF+ + + + + ++ +GD++++ + + +G HNG Sbjct: 176 VREIAKEHNLSTALKKDSTGICFIGERNFDTFLDKYL--LSKKGDMINVDDSKKIGSHNG 233 Query: 259 IINYTIGQRRGLGVAMGE---PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +I+YT+GQR+GLG+ P FV D + + V +SL + + W+ Sbjct: 234 LIHYTLGQRKGLGIGGVGSGLPWFVAGKDIEKNILYVAQGEEHDSLYSTSLIGEQPFWI- 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 E+ +KC K R Q + V V ++ + + V F+ V GQ VFY D Sbjct: 293 ---MEEEPNFPYKCTAKFRYRQKDIAVTVHKDGENIRVVFDDKVKAVTPGQIAVFYDGD- 348 Query: 373 NEARVLGGGIIS 384 +G II Sbjct: 349 ---YCMGSAIIK 357 >gi|157825546|ref|YP_001493266.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia akari str. Hartford] gi|166235076|sp|A8GMY3|MNMA_RICAH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|157799504|gb|ABV74758.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia akari str. Hartford] Length = 365 Score = 456 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 180/371 (48%), Positives = 237/371 (63%), Gaps = 13/371 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +VVAMSGGVDSS VAA+L G++VIG+TLQLY+ A +K +CCAGQD+YDA+ Sbjct: 7 KHSTIVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKM 66 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + HYV DYE +F+ +VI F SY GETPLPCV CN +VKF DL+ R+LGA Sbjct: 67 VANKLGIPHYVLDYESKFKESVIDNFVDSYLQGETPLPCVQCNNSVKFRDLIKTARELGA 126 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 LATGHY+R GD+G + +D +DQSYFLF TT++QL L FPLG K+ Sbjct: 127 SQLATGHYVRK--VSGDNG---VELHTGLDPAKDQSYFLFTTTKEQLEYLSFPLGWFTKD 181 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R LA + GL++A K DSQDICFV G Y V+ I + G I+H+NG LG H+G Sbjct: 182 ETRKLASKFGLEVAYKPDSQDICFVPDGNYKSVINTIRPNASESGKIIHINGFALGEHSG 241 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 IINYTIGQRRGLG+A EPL+VV +D + V VGP +L V ++++NWL D + ++ Sbjct: 242 IINYTIGQRRGLGIAYNEPLYVVKIDPKDNIVYVGPEAALHVQEFIIKDVNWLADEIKDN 301 Query: 319 AVVDGFKCFVKIRSSQDP-VPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + VKIRS++ P + + DD + + F +E VA GQACV Y + RV Sbjct: 302 K---KLEVAVKIRSTRPPRLAAISKLGDDKMKIRFLSAEKAVAPGQACVIYAGE----RV 354 Query: 378 LGGGIISGSKR 388 LGGG I+ R Sbjct: 355 LGGGWITRDIR 365 >gi|59801573|ref|YP_208285.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae FA 1090] gi|293399659|ref|ZP_06643811.1| tRNA methyl transferase [Neisseria gonorrhoeae F62] gi|59718468|gb|AAW89873.1| putative tRNA methyltransferase [Neisseria gonorrhoeae FA 1090] gi|291609910|gb|EFF39033.1| tRNA methyl transferase [Neisseria gonorrhoeae F62] Length = 383 Score = 456 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 122/383 (31%), Positives = 186/383 (48%), Gaps = 24/383 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + + C Q Sbjct: 15 LRMNTTSNTSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWENDDNDE---YCSIKQ 71 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 72 DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 131 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GAD +ATGHY R G + + +D +DQSYFL+ QL FP Sbjct: 132 YAVGQGADTIATGHYARKEARNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 186 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 187 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGK 244 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 +G H G++ YT+GQR+GLG+ GEP FV D + +IV L + + + Sbjct: 245 TIGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMND 304 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACV 366 +++ L E + C K R P + +D+ + F++ + V GQ+ V Sbjct: 305 LSFT---LPERPKAGRYTC--KTRYRMADAPCELCYLDDETAELVFDEPQWAVTPGQSAV 359 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 Y D LGGGII + + Sbjct: 360 LYDVDI----CLGGGIIQTTDKP 378 >gi|240113689|ref|ZP_04728179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae MS11] Length = 367 Score = 456 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 121/381 (31%), Positives = 187/381 (49%), Gaps = 24/381 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + + C QD Sbjct: 1 MNTTSNTSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWENDDNDE---YCSIKQDS 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 58 FDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + GAD +ATGHY R + G + + +D +DQSYFL+ QL FPLG Sbjct: 118 VEQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ + Sbjct: 173 GLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTI 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G H G++ YT+GQR+GLG+ GEP FV D + +IV L + + +++ Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFY 368 + L E + C K R P + +D+ + F++ + V GQ+ V Y Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELCYLDDETAELVFDEPQWAVTPGQSAVLY 345 Query: 369 TSDSNEARVLGGGIISGSKRS 389 D LGGGII + + Sbjct: 346 DVDI----CLGGGIIQTTDKP 362 >gi|326561491|gb|EGE11835.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis 46P47B1] gi|326566712|gb|EGE16851.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis 103P14B1] gi|326571429|gb|EGE21444.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis BC7] gi|326576626|gb|EGE26533.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis 101P30B1] Length = 392 Score = 456 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 131/386 (33%), Positives = 201/386 (52%), Gaps = 28/386 (7%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K PKD++V+V MSGGVDSSV A LL++ G+ V G+ ++ + S+ C A D+ D Sbjct: 15 KAPKDIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSE---YCTAMTDLAD 71 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR- 134 A+ V D I + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 72 AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131 Query: 135 ---QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R G + + R +D +DQSYFL A ++ FP Sbjct: 132 PQFGLGADFIATGHYARR----GFSQDGKAQLLRGLDANKDQSYFLHAVGGDKIAKTLFP 187 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 +G+++K VR +A++ L A+K DS ICF+ + K+ D +++ A +GDI +G Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRES---LEVHRI 303 +G H+G++ YTIGQR G+G+ EP FV++ D ++R+IVG L+ + Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSDEL 305 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVA 360 +++W + GF+C K R Q V D V V F+ ++ V Sbjct: 306 TAYKLDWGIAPPAQIFGKQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFDDAQRAVT 365 Query: 361 SGQACVFYTSDSNEARVLGGGIISGS 386 GQ+ VFY D LGGG+I G+ Sbjct: 366 QGQSVVFYDGDI----CLGGGVIDGT 387 >gi|317122065|ref|YP_004102068.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermaerobacter marianensis DSM 12885] gi|315592045|gb|ADU51341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermaerobacter marianensis DSM 12885] Length = 405 Score = 456 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 134/370 (36%), Positives = 197/370 (53%), Gaps = 16/370 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDAR 77 RV+ AMSGGVDSSV+AALL+ +GY+VIGVT+Q + + A R G CC+ + DAR Sbjct: 6 KGRVLAAMSGGVDSSVMAALLRDEGYEVIGVTMQTWPAMAAEDEARYGGCCSLSAIDDAR 65 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV + + + +YV + + F VI F Y G TP PC+ CNR +KF + L + LG Sbjct: 66 RVAERLGIPYYVMNMRQDFEEKVIDYFVEEYLRGRTPNPCIACNRYIKFDEFLRRAQALG 125 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D +ATGHY + DD R ++ + D +DQ+Y L+ TQ+QL P+G +K Sbjct: 126 CDYVATGHYA---IVEYDDAAGRFVLRKSADRRKDQTYVLYNFTQEQLARTLLPIGRFEK 182 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR LA GL A K +SQ+ICFV+ + ++ G I + G+ +G H Sbjct: 183 SEVRRLAEAYGLVTARKPESQEICFVKDDDHHRFLEERAGDRIQPGPIYDIRGRRIGTHR 242 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 G+ YT+GQRRGLG+ P++VV + + +IVGP + + ++NW+ Sbjct: 243 GLAYYTVGQRRGLGIQSDRPMYVVRILPEQNALIVGPDTATYARGLRAVDVNWVS----W 298 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRN---DDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 + + K+R V+ DD V V F++ + + GQA VFY D Sbjct: 299 PGLAGEARVTAKVRYKSPEAAAVVRPVAGRDDAVEVWFDEPQRAITPGQAVVFYDGD--- 355 Query: 375 ARVLGGGIIS 384 RV GGG+I+ Sbjct: 356 -RVAGGGVIA 364 >gi|134294775|ref|YP_001118510.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia vietnamiensis G4] gi|205813829|sp|A4JBM2|MNMA_BURVG RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|134137932|gb|ABO53675.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia vietnamiensis G4] Length = 384 Score = 456 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 126/380 (33%), Positives = 177/380 (46%), Gaps = 32/380 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D Sbjct: 2 SKRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ +++ V F Y+AG TP P V CN +KF L L A Sbjct: 59 VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +++ATGHY R R G R + + D +DQSYFL Q QL FPLG+M K Sbjct: 119 EMIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEMPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A ++GL A K DS ICF+ + + D + R G + +G+ +G H G Sbjct: 174 KVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKRVGEHIG 231 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT GQR+G+G+ GEP FV D S+ + V L H + ++W Sbjct: 232 LAFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIPSNTLYVVQGHDHPWLLSHELVAGNVSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDP------VPVFVQRNDDGVYVDFEKSEVGVASGQA 364 + + DGF C K R Q + + F+ ++ V GQ+ Sbjct: 292 VAG----EPPADGFACGAKTRYRQADAACRFGAAAAGPAGEARFTLAFDDAQWAVTPGQS 347 Query: 365 CVFYTSDSNEARVLGGGIIS 384 V Y + LGGGII Sbjct: 348 AVLYDGEI----CLGGGIIE 363 >gi|313902383|ref|ZP_07835786.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermaerobacter subterraneus DSM 13965] gi|313467314|gb|EFR62825.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermaerobacter subterraneus DSM 13965] Length = 404 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 135/371 (36%), Positives = 195/371 (52%), Gaps = 16/371 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76 + RV+ AMSGGVDSSV+AALL+ GY+VIGVT+Q + + R G CC+ V DA Sbjct: 5 RKGRVLAAMSGGVDSSVMAALLRDQGYEVIGVTMQTWPAMEPEDEARYGGCCSLSAVDDA 64 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV + + + +YV + + F VI F + Y G TP PC+ CNR +KF + L L Sbjct: 65 RRVAERLGIPYYVMNMRQDFEEKVIDYFVAEYLQGRTPNPCIACNRYIKFDEFLRRAEAL 124 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 G D +ATGHY + D+ R I+ + D +DQ+Y L+ TQ+QL P+G + Sbjct: 125 GCDYVATGHYA---IVEYDEALGRFILRKSADRRKDQTYVLYNFTQEQLARTLLPIGRFE 181 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR LA GL A K +SQ+ICFV+ + ++ G I G+ +G H Sbjct: 182 KSQVRQLAEAYGLVTARKPESQEICFVKDNDHRRFLEERAGDRIRPGPIYDTRGRRVGTH 241 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G+ YT+GQRRGLG+ P++VV + + +IVGP + + E+NW+ Sbjct: 242 RGLAYYTVGQRRGLGIQSDRPMYVVRILPEKNALIVGPDTATYARGLRAVEVNWVS---- 297 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRN---DDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + + ++R P V+ D V V FE+ + + GQA VFY D Sbjct: 298 WPGLAGEARVTARVRYKSPEAPAVVRPLVGRQDAVEVWFEEPQRAITPGQAVVFYDGD-- 355 Query: 374 EARVLGGGIIS 384 RV GGG+I+ Sbjct: 356 --RVAGGGVIA 364 >gi|139438964|ref|ZP_01772424.1| Hypothetical protein COLAER_01430 [Collinsella aerofaciens ATCC 25986] gi|133775675|gb|EBA39495.1| Hypothetical protein COLAER_01430 [Collinsella aerofaciens ATCC 25986] Length = 366 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 141/374 (37%), Positives = 207/374 (55%), Gaps = 13/374 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + RV+VAMSGGVDSSV A LLK GY+ +G T++L G +D+ DA+ Sbjct: 2 HNKRVLVAMSGGVDSSVTAYLLKSQGYECVGATMRL-TCPAPDPTTGMSKVDRDIADAKA 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + + H+V D ++ F VI F ++Y G TP PC+ CNR +KF LL +G Sbjct: 61 VAERLGIPHHVLDLQQTFDRNVIERFVNAYQEGLTPNPCIICNRHIKFGALLDAALDMGC 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY ++ + R D ++DQSYFL++ TQ++L FPL + KE Sbjct: 121 DYIATGHYAKTSQAAD----GTWQLHRGEDPKKDQSYFLYSLTQERLAHTIFPLAGLDKE 176 Query: 199 -SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR +A E G A K++S+DICF+ G Y D ++R A GDIV +G ++GRHN Sbjct: 177 RDVRRIAAEQGFTNAQKAESEDICFIPDGDYADYIERRCGHTAAPGDIVWRDGSVVGRHN 236 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 G + YTIGQR+GLGVAM P++V +D ++ V +G E L + E W Sbjct: 237 GALRYTIGQRKGLGVAMAHPVYVTGIDAANNTVHLGEAEDLTAVALTADEWIWSAPDARM 296 Query: 318 DAVVD--GFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374 +A +D G + K R Q + R++DG + + F++ + +A GQA V Y D Sbjct: 297 EAELDAGGIRVGAKYRYRQKDQAATLTRDEDGQMLLTFDEPQRAIAPGQAVVVYRGDI-- 354 Query: 375 ARVLGGGIISGSKR 388 VLGGG ++G+ + Sbjct: 355 --VLGGGTVTGAIK 366 >gi|319764949|ref|YP_004128886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alicycliphilus denitrificans BC] gi|317119510|gb|ADV01999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alicycliphilus denitrificans BC] Length = 373 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 122/382 (31%), Positives = 185/382 (48%), Gaps = 33/382 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVVV +SGGVDS+V A LLK+ G++V+G+ ++ + S+ C + QD DA V Sbjct: 6 KQRVVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---YCSSRQDFLDAASV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + ++ +++ V F Y AG TP P V CN +KF L +LGA+ Sbjct: 63 ADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAE 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R + + +D +DQSYFL Q+QL FP+G+++K Sbjct: 123 KIATGHYARVRHNPA---TGLFELLKGLDPAKDQSYFLHRLNQEQLARTLFPVGELRKTE 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E+GL A K DS ICF+ + + + + R + G I+ G+ LGRH G+ Sbjct: 180 VRRIAEEIGLPNAKKKDSTGICFIGERPFREFLNRYISHE--PGPILDDRGRRLGRHVGL 237 Query: 260 INYTIGQRRGLGVAM------------GEPLFVVYLDKNSS--RVIVGP-RESLEVHRIY 304 YT+GQR+GLG+ P FV + ++ RV+ G L HR+ Sbjct: 238 SFYTLGQRQGLGIGGVKEKGAQRGGGEHAPWFVARKELATNTLRVVQGHDHPWLLSHRLA 297 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQ 363 ++ +W+ C K R Q V G + + F +++ V GQ Sbjct: 298 AQDASWVAGRPPAPGA-----CAAKTRYRQQDAACTVLAAQGGAFSLQFSEAQWAVTPGQ 352 Query: 364 ACVFYTSDSNEARVLGGGIISG 385 + V Y + LGGG+I+ Sbjct: 353 SAVLYDGEV----CLGGGVIAT 370 >gi|269214555|ref|ZP_05986816.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria lactamica ATCC 23970] gi|269209446|gb|EEZ75901.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria lactamica ATCC 23970] Length = 367 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 121/381 (31%), Positives = 186/381 (48%), Gaps = 24/381 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + C QD Sbjct: 1 MNTTSDPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 58 FDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 GAD +ATGHY R + G + + +D +DQSYFL+ QL FPLG Sbjct: 118 VGQGADTIATGHYARKEVCNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ + Sbjct: 173 GLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G H G++ YT+GQR+GLG+ GEP FV D + +IV L + + +++ Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 + L E + C K R P ++ +D+ + F++ + V GQ+ V Y Sbjct: 291 FT---LPECPKAGHYTC--KTRYRMADAPCELRYLDDETAELVFDEPQWAVTPGQSAVLY 345 Query: 369 TSDSNEARVLGGGIISGSKRS 389 D LGGGII + + Sbjct: 346 DGDI----CLGGGIIQTTDKP 362 >gi|325142740|gb|EGC65116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis 961-5945] gi|325198666|gb|ADY94122.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis G2136] gi|325201768|gb|ADY97222.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis M01-240149] gi|325208488|gb|ADZ03940.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis NZ-05/33] Length = 367 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 120/381 (31%), Positives = 186/381 (48%), Gaps = 24/381 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + C QD Sbjct: 1 MNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 58 FDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 GAD +ATGHY R + G + + +D +DQSYFL+ QL FPLG Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ + Sbjct: 173 GLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G H G++ YT+GQR+GLG+ GEP FV D + +IV L + + +++ Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 + L E + C K R P ++ +++ + F++ + V GQ+ V Y Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELRYLDEETAELVFDEPQWAVTPGQSAVLY 345 Query: 369 TSDSNEARVLGGGIISGSKRS 389 D LGGGII + + Sbjct: 346 EGDV----CLGGGIIQSTDKP 362 >gi|296315198|ref|ZP_06865139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria polysaccharea ATCC 43768] gi|296837925|gb|EFH21863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria polysaccharea ATCC 43768] Length = 367 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 121/381 (31%), Positives = 186/381 (48%), Gaps = 24/381 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + C QD Sbjct: 1 MNTTSDPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 58 FDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 GAD +ATGHY R + G + + +D +DQSYFL+ QL FPLG Sbjct: 118 VVQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ + Sbjct: 173 GLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G H G++ YT+GQR+GLG+ GEP FV D + +IV L + + +++ Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 + L E + C K R P ++ +D+ + F++ + V GQ+ V Y Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELRYLDDETAELVFDEPQWAVTPGQSAVLY 345 Query: 369 TSDSNEARVLGGGIISGSKRS 389 D LGGGII + + Sbjct: 346 DGDI----CLGGGIIQTTDKP 362 >gi|330827143|ref|YP_004390446.1| tRNA-specific 2-thiouridylase mnmA [Alicycliphilus denitrificans K601] gi|329312515|gb|AEB86930.1| tRNA-specific 2-thiouridylase mnmA [Alicycliphilus denitrificans K601] Length = 373 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 122/382 (31%), Positives = 185/382 (48%), Gaps = 33/382 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVVV +SGGVDS+V A LLK+ G++V+G+ ++ + S+ C + QD DA V Sbjct: 6 KQRVVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---YCSSRQDFLDAASV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + ++ +++ V F Y AG TP P V CN +KF L +LGA+ Sbjct: 63 ADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAE 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R + + +D +DQSYFL Q+QL FP+G+++K Sbjct: 123 KIATGHYARVRHNPA---TGLFELLKGLDPAKDQSYFLHRLNQEQLARTLFPVGELRKTE 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E+GL A K DS ICF+ + + + + R + G I+ G+ LGRH G+ Sbjct: 180 VRRIAEEIGLPNAKKKDSTGICFIGERPFREFLNRYISHE--PGPILDDRGRRLGRHVGL 237 Query: 260 INYTIGQRRGLGVAM------------GEPLFVVYLDKNSS--RVIVGP-RESLEVHRIY 304 YT+GQR+GLG+ P FV + ++ RV+ G L HR+ Sbjct: 238 SFYTLGQRQGLGIGGVKEKGAQRGGGEHAPWFVARKELATNTLRVVQGHDHPWLLSHRLA 297 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQ 363 ++ +W+ C K R Q V G + + F +++ V GQ Sbjct: 298 AQDASWVAGRPPAPGA-----CAAKTRYRQQDAACTVLAAQGGAFSLQFPEAQWAVTPGQ 352 Query: 364 ACVFYTSDSNEARVLGGGIISG 385 + V Y + LGGG+I+ Sbjct: 353 SAVLYDGEV----CLGGGVIAT 370 >gi|89902516|ref|YP_524987.1| tRNA-specific 2-thiouridylase MnmA [Rhodoferax ferrireducens T118] gi|122478272|sp|Q21RZ7|MNMA_RHOFD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|89347253|gb|ABD71456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodoferax ferrireducens T118] Length = 384 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 122/398 (30%), Positives = 183/398 (45%), Gaps = 40/398 (10%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K RVVV +SGGVDS+V A LLK+ GY+VIG+ ++ + S+ C + D Sbjct: 1 MNKRHSGQRVVVGLSGGVDSAVTAWLLKQQGYEVIGIFMKNWEDDDDSE---YCSSNVDF 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA V D I + ++ +++ V F Y AG TP P + CN +KF L Sbjct: 58 IDAAAVADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDILCNAEIKFKAFLDHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDD----------GKRRRIMCRPMDLERDQSYFLFATTQQ 183 +LGA +ATGHY R R D R + + +D +DQSYFL Q Sbjct: 118 LRLGAQKIATGHYARVRCVAADGRVLDAAQAQMSDGRFELLKGLDPSKDQSYFLHRLNQA 177 Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243 QL FP+G++ K VR LA E+GL A K DS ICF+ + + D + R A G Sbjct: 178 QLSKTLFPVGELLKTEVRRLALEIGLPNAKKKDSTGICFIGERPFRDFLNRYIARE--PG 235 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAM------------GEPLFVVYLDKNSSRVI 291 I G+ +G+H G+ YT+GQR+GLG+ P FV D ++ + Sbjct: 236 PIKDDKGRTIGQHVGLSFYTLGQRQGLGIGGLKAKGAQRGGGEHAPWFVARKDLATNTLW 295 Query: 292 VGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV 348 V L+ H + ++ +W+ + + K R Q P + Sbjct: 296 VVQGHEHPWLQSHGLSAQDASWVAGTAPQAG-----RFSAKTRYRQLDAPCTLAAGAGAA 350 Query: 349 -YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385 ++ F + + V GQ+ V Y + LGGG+I+ Sbjct: 351 FHLSFPEPQWAVTPGQSAVLYDDEV----CLGGGVIAA 384 >gi|315146247|gb|EFT90263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX4244] Length = 374 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 122/370 (32%), Positives = 183/370 (49%), Gaps = 26/370 (7%) Query: 36 VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEER 95 A LLK GYDVIG+ ++ ++ + G C A +D D +V D I + +Y ++E+ Sbjct: 22 TALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVADQIGIPYYSVNFEKE 78 Query: 96 FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGD 155 + + V F + Y G TP P V CN+ +KF L QLGAD +ATGHY + V Sbjct: 79 YWDRVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLGADYVATGHYAQ----VET 134 Query: 156 DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKS 215 D M R +D +DQ+YFL +Q QL FPLG M+K VR +A GL A K Sbjct: 135 DENGVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVRAIADRAGLATAKKK 194 Query: 216 DSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI----GQRRGLG 271 DS +CF+ + + + + A +G++V +G+I G+H+G++ YTI G G G Sbjct: 195 DSTGVCFIGEKNFKEFLSNYLP--AKKGNMVTEDGEIKGQHDGLMYYTIGQRQGLGIGGG 252 Query: 272 VAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFV 328 EP FV+ D ++ + VG E L + E+++ D + F C Sbjct: 253 GKTQEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVDT----PMPKEFDCTA 308 Query: 329 KIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 K R Q +PV V ++DG V F++ V GQA VFY LGGG+I + Sbjct: 309 KFRYRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFYDG----MECLGGGLIDRA 364 Query: 387 KRSDAVEESL 396 + + + + Sbjct: 365 YQDEKELQYV 374 >gi|240127089|ref|ZP_04739750.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|268685447|ref|ZP_06152309.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae SK-93-1035] gi|268625731|gb|EEZ58131.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae SK-93-1035] Length = 383 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 122/383 (31%), Positives = 187/383 (48%), Gaps = 24/383 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + + C Q Sbjct: 15 LRMNTTSNTSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWENDDNDE---YCSIKQ 71 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 72 DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 131 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 132 YAVGQGADTIATGHYARKEVRNG-----VHYLFKGLDRNKDQSYFLYRLKPFQLERAIFP 186 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 187 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGK 244 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 +G H G++ YT+GQR+GLG+ GEP FV D + +IV L + + + Sbjct: 245 TIGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMND 304 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACV 366 +++ L E + C K R P + +D+ + F++ + V GQ+ V Sbjct: 305 LSFT---LPERPKAGRYTC--KTRYRMADAPCELCYLDDETAELVFDEPQWAVTPGQSAV 359 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 Y D LGGGII + + Sbjct: 360 LYDVDI----CLGGGIIQTTDKP 378 >gi|329890336|ref|ZP_08268679.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Brevundimonas diminuta ATCC 11568] gi|328845637|gb|EGF95201.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Brevundimonas diminuta ATCC 11568] Length = 410 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 204/371 (54%), Positives = 258/371 (69%), Gaps = 7/371 (1%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P+ RVV AMSGGVDS+VVAALL + GYDV+GVTLQLY+ +A K+KG+CCAGQD++DAR Sbjct: 42 PQGARVVAAMSGGVDSTVVAALLHKAGYDVVGVTLQLYDHGEALKKKGACCAGQDIHDAR 101 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 D I + HYV DYE RF++AVI FA SY G+TP+PC+ CN+TVKF DLL V R LG Sbjct: 102 LAADLIGIPHYVLDYENRFKDAVIDQFADSYLKGQTPVPCIRCNQTVKFRDLLDVARDLG 161 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A+ +ATGHY+R + R M + +D RDQSYFLFATTQ QL LRFPL D++K Sbjct: 162 AEAMATGHYVRRATH-----GNRSQMRKAVDHSRDQSYFLFATTQDQLDYLRFPLADLEK 216 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR +A +GL IA K DSQDICFV G Y ++ R+ GDIVH++G++LGRH+ Sbjct: 217 PQVRGVAASLGLRIAAKPDSQDICFVPTGDYRTLIDRLRPQGREAGDIVHMDGRVLGRHS 276 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD-GLF 316 GI +YTIGQRRGL VA+GEPLFVV LD + RVIVGPRE+L R+ L E NWLGD Sbjct: 277 GITDYTIGQRRGLNVAVGEPLFVVKLDPDHRRVIVGPREALLTARLTLEETNWLGDQATI 336 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 E+A DG ++RS++ P P + D V V F++ E GVA GQACV Y +++ R Sbjct: 337 EEAARDGAPVLARVRSTRQPSPARLALVDGAVQVVFDQGEEGVAPGQACVLYDP-ADDER 395 Query: 377 VLGGGIISGSK 387 V+GGG I ++ Sbjct: 396 VMGGGFIHSTE 406 >gi|15604175|ref|NP_220690.1| tRNA-specific 2-thiouridylase MnmA [Rickettsia prowazekii str. Madrid E] gi|6226259|sp|Q9ZDM1|MNMA_RICPR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|3860867|emb|CAA14767.1| unknown [Rickettsia prowazekii] gi|292571906|gb|ADE29821.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rickettsia prowazekii Rp22] Length = 358 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 179/364 (49%), Positives = 235/364 (64%), Gaps = 13/364 (3%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 +VVAMSGGVDSS VAA+L G++VIG+TLQLY+ A +K +CCAGQD+YDA+ V + Sbjct: 4 IVVAMSGGVDSSAVAAMLHEQGHNVIGITLQLYDYGIAVGKKNACCAGQDIYDAKMVANK 63 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + HYV DYE +F+ +VI F SY GETPLPCV CN++VKF DL++ ++LGAD LA Sbjct: 64 LGIPHYVLDYENKFKESVIDNFVDSYLHGETPLPCVQCNKSVKFRDLINTAKELGADKLA 123 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY+R +G + +D +DQSYFLF T++QL L FPLG K R Sbjct: 124 TGHYVRKI-----NGYNGAELHTGLDTTKDQSYFLFTITREQLEYLSFPLGGFTKYETRK 178 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA + GLDIADK DSQDICFV G Y V+ +I G IVH+NG LG H+GIINY Sbjct: 179 LASKFGLDIADKPDSQDICFVPDGNYKTVINKIRPEANTSGKIVHINGFELGEHSGIINY 238 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQRRGLG+A EPL+VV +D +++ V VG +L VH ++++NWL D + + + Sbjct: 239 TIGQRRGLGIAYNEPLYVVKIDPSNNIVYVGQESALHVHEFIIKDVNWLADEIKDH---E 295 Query: 323 GFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 VKIRS++ P + + +D + V F E VA GQACV Y + RVLGGG Sbjct: 296 KLAVDVKIRSTRPPCHAEISKLCNDRIKVKFLSKEKAVAPGQACVIYAGE----RVLGGG 351 Query: 382 IISG 385 I+ Sbjct: 352 WITS 355 >gi|74316869|ref|YP_314609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thiobacillus denitrificans ATCC 25259] gi|123612137|sp|Q3SKH7|MNMA_THIDA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|74056364|gb|AAZ96804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thiobacillus denitrificans ATCC 25259] Length = 358 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 119/372 (31%), Positives = 178/372 (47%), Gaps = 26/372 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RVVV +SGGVDS+V A LLK+ GYDV+GV ++ ++ ++ C A QD D V Sbjct: 3 TRVVVGLSGGVDSAVAAYLLKQQGYDVLGVFMKNWDDDDNTEH---CTARQDFLDVLAVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + ++ ++ V F + Y AG TP P V CN +KF L GAD Sbjct: 60 DVLGIEVEAVNFAAEYKERVFSYFLAEYQAGRTPNPDVLCNAEIKFKAFLDDAIARGADY 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+ G D R + R D +DQSYFL+ Q QL FPL + K V Sbjct: 120 IATGHYVGK----GHDTFGRAALLRARDANKDQSYFLYRLNQAQLSPALFPLARLPKPEV 175 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++AR +GL A K DS ICF+ + + + ++R GD+ G+++G+H G++ Sbjct: 176 REIARRIGLPNAAKKDSTGICFIGERNFREFLERYLPRD--PGDMTTPEGRVVGQHQGLM 233 Query: 261 NYTIGQRR-----GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YT+GQR+ G P FV D ++ ++V L+ + +++W+ Sbjct: 234 YYTLGQRQGLGIGGQKGGSDAPWFVAAKDMATNTLVVVQGHDHPLLQRFGVGAGQLSWIA 293 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + K R Q + DD + + F+ + V GQ+ V Y D Sbjct: 294 GVAPDPERP----YTAKTRYRQTDAACHITTLYDDTLELVFDAPQWAVTPGQSVVLYDGD 349 Query: 372 SNEARVLGGGII 383 LGGGII Sbjct: 350 V----CLGGGII 357 >gi|169350064|ref|ZP_02867002.1| hypothetical protein CLOSPI_00804 [Clostridium spiroforme DSM 1552] gi|169293277|gb|EDS75410.1| hypothetical protein CLOSPI_00804 [Clostridium spiroforme DSM 1552] Length = 387 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 131/389 (33%), Positives = 197/389 (50%), Gaps = 27/389 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73 RVV+ +SGGVDS+V A LLK+ GY+VIGV ++ ++S+ + G+ C QD Sbjct: 13 KRVVLGLSGGVDSAVAAYLLKKQGYEVIGVFMRNWDSQLNNDILGNPTNDNDICPQEQDY 72 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ V + + D+ + + + V F Y G TP P + CN+ +KF L+ Sbjct: 73 NDAKAVAKCLGIEIKRVDFIKEYWDNVFTYFLDEYRKGRTPNPDILCNKHIKFKAFLNYA 132 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + L AD +ATGHY R D IM + +D +DQ+YFL QQQL + FPLG Sbjct: 133 KTLNADYIATGHYARVVHSENKD----SIMLKGIDNNKDQTYFLCQLNQQQLQNSLFPLG 188 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252 ++ K+ VR LA E+ L +ADK DS ICF+ + + + ++ A G +V + G I Sbjct: 189 EIDKKEVRRLAHELQLPVADKKDSTGICFIGERDFKEFLQNYIP--AQSGKMVDIETGDI 246 Query: 253 LGRHNGIINYTIGQRR-GLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308 +G H+GI+ YTIGQR+ G FVV D + + + V ++ L + ++ Sbjct: 247 IGEHSGIMYYTIGQRKGLGIGGPGGAWFVVGKDYDKNVLYVCQGDQKDWLYSSGALISDV 306 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVF 367 NW+ + + C K R Q P+ ++ ++D VY+ F+K V GQA VF Sbjct: 307 NWIA----SNKPTEKISCNAKFRYRQADNPIKLEFIDEDKVYLTFDKPVKAVTPGQAAVF 362 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396 Y D LGGG I + E L Sbjct: 363 YDGDI----CLGGGTIETVYKDGKPIEYL 387 >gi|153939777|ref|YP_001392187.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum F str. Langeland] gi|205810589|sp|A7GHC7|MNMA2_CLOBL RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|152935673|gb|ABS41171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum F str. Langeland] gi|295320186|gb|ADG00564.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum F str. 230613] Length = 353 Score = 455 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 127/364 (34%), Positives = 205/364 (56%), Gaps = 19/364 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V +AMSGGVDSSV A +LK GYDVIG+ + L+ + C DARRV + Sbjct: 6 VALAMSGGVDSSVSAYILKERGYDVIGIYMDLWRDEREE-----YCNKSAAEDARRVAEK 60 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 +++ +V + E++F+N VI F Y +G TP PCV CN+T+KF + ++ GAD +A Sbjct: 61 LDIPFHVINIEKKFKNNVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEFGADFMA 120 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ R+++ + D ++DQ+Y ++ Q QL P G+ KK+ +R+ Sbjct: 121 TGHYCKI-----EERNGRKVIVKAEDDKKDQTYMMYNLKQYQLERTIMPCGEYKKDHIRE 175 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A +GLD+ +K DSQ+ICF+ + +KR EG+ V G I+G+H GII Y Sbjct: 176 IAESIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKRKISEGNFVDKEGNIIGKHKGIIYY 235 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A+G+P +V+ ++ ++ V++G E + + +++N++ D + Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGEEEDIFRTELIAKDVNFI----PFDKLEK 291 Query: 323 GFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + K+R S P + ++ V V F+ + + GQ+ VFY D GGG Sbjct: 292 PMELEAKVRYSAKPSKATIIPLENNKVKVVFQNKQRAITKGQSVVFYDKDILA----GGG 347 Query: 382 IISG 385 II G Sbjct: 348 IIEG 351 >gi|149926700|ref|ZP_01914960.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Limnobacter sp. MED105] gi|149824629|gb|EDM83845.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Limnobacter sp. MED105] Length = 358 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 124/373 (33%), Positives = 184/373 (49%), Gaps = 26/373 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 VV+ MSGGVDSSV A LLK+ GY+VIG+ ++ + S+ C + QD DA V Sbjct: 3 KTVVIGMSGGVDSSVSAWLLKQQGYNVIGLFMKNWEDDDDSE---YCSSRQDWLDAASVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + V ++ +++ V F S Y+AG TP P + CN +KF L LGAD Sbjct: 60 DVVGVDIEAVNFASEYKDRVFSVFLSEYSAGRTPNPDILCNSEIKFKAFLDHAYSLGADY 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R G+ + + +D +DQSYFL Q QL FPLG+++K V Sbjct: 120 IATGHYARVRELNGE-----FQLLKAVDHSKDQSYFLHRLNQAQLSKTLFPLGEIQKTEV 174 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E+GL A K DS ICF+ + + + + R G I++ GQ +G H G+ Sbjct: 175 RKIALELGLANATKKDSTGICFIGERPFREFLNRYLPTA--PGPILNDEGQQIGEHVGLS 232 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YT+GQR+G+G+ GEP FV D ++ + V L + + +++ Sbjct: 233 FYTLGQRKGIGIGGQKEGNGEPWFVARKDLQNNTLYVVQGHDHPWLHQKVLVAEQAHYIS 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 D C R Q+ + + G ++F +S+ V GQ+ V Y D Sbjct: 293 GHAPSDP--QHMACKA--RYRQEDSSCDFKLTEQGFELNFAESQFAVTPGQSAVLYRGDV 348 Query: 373 NEARVLGGGIISG 385 LGGG+I+ Sbjct: 349 ----CLGGGVIAS 357 >gi|160944760|ref|ZP_02091987.1| hypothetical protein FAEPRAM212_02275 [Faecalibacterium prausnitzii M21/2] gi|158443944|gb|EDP20948.1| hypothetical protein FAEPRAM212_02275 [Faecalibacterium prausnitzii M21/2] Length = 367 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 132/376 (35%), Positives = 206/376 (54%), Gaps = 13/376 (3%) Query: 15 DKNPKD-MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQD 72 +NP + R ++AMSGGVDSSV A L+++ GYD G+T++L +N +CC+ +D Sbjct: 3 TQNPANRPRALIAMSGGVDSSVAACLMQQAGYDCTGITMRLTHNETLGQSGYQTCCSEKD 62 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 + DA V +++ + V D+ FR +I F Y AG TP PC+DCN+ +KF LL Sbjct: 63 IEDAAEVAFALDMPYQVLDFTADFRAQIIEKFIRVYEAGGTPNPCIDCNKYMKFRHLLDW 122 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + G + + TGHY R D R ++ + +D +DQSY L+ TQ+QL +R PL Sbjct: 123 AEEHGMEYVVTGHYARVE---QDAATGRWLLKKGLDEGKDQSYVLYNLTQEQLAHIRLPL 179 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G + K VR++A+E A K DSQDICFV G Y +++ GD + +G++ Sbjct: 180 GALHKTEVREIAQEHSFINAQKHDSQDICFVPDGDYARFMEQFTGKHYPAGDFLDRSGKV 239 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G H+G + YT+GQR+GLG+A+G P++V D ++ V VGP L +Y ++NW+ Sbjct: 240 VGTHSGAVRYTLGQRKGLGLALGAPVYVCGKDMQANTVTVGPESELFDSIVYAEDVNWIA 299 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 A+ + + R Q V ++G ++F++ + GQA V Y D Sbjct: 300 I----PALTGPLRVTARTRYHQAEQQATVYPAENGFRLEFDQPQRAPTPGQAAVLYQGDV 355 Query: 373 NEARVLGGGIISGSKR 388 VLGGG I+ ++ Sbjct: 356 ----VLGGGTITRVEK 367 >gi|225077158|ref|ZP_03720357.1| hypothetical protein NEIFLAOT_02213 [Neisseria flavescens NRL30031/H210] gi|224951506|gb|EEG32715.1| hypothetical protein NEIFLAOT_02213 [Neisseria flavescens NRL30031/H210] Length = 367 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 118/381 (30%), Positives = 190/381 (49%), Gaps = 24/381 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ ++V +SGGVDSSV AALLK+ G+ + GV +Q + + C QD Sbjct: 1 MNTTNTPTNIIVGLSGGVDSSVTAALLKQQGHQISGVFMQNWEDDDNDE---YCSIKQDS 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DA V D I + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 58 FDAIAVADIIGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + GAD +ATGHY R + G + + +D +DQSYFL+ QL FPLG Sbjct: 118 IEQGADTIATGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERAIFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR LA E L A K DS ICF+ + + + +++ G +V G+++ Sbjct: 173 ELEKPEVRRLAEEFKLPTATKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGKVV 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G H G++ YT+GQR+GLG+ GEP FV D + +IV L + + +++ Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTQSLIMNDLS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 + + +G + K R P ++ +D+ + + F++ + V GQ+ V Y Sbjct: 291 FT----LPERPTEG-RYTCKTRYRMADAPCTLRYLDDENIELVFDEPQWAVTPGQSAVLY 345 Query: 369 TSDSNEARVLGGGIISGSKRS 389 D LGGGII + + Sbjct: 346 DGDV----CLGGGIIMSTDKP 362 >gi|289450037|ref|YP_003475194.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184584|gb|ADC91009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 380 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 146/381 (38%), Positives = 202/381 (53%), Gaps = 13/381 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDAR 77 +V+VAMSGGVDSSV A LL GYDV G T+Q++ N R+ + CC+ V DAR Sbjct: 2 SKGKVLVAMSGGVDSSVAAKLLVDHGYDVTGATMQIWQNEREENHCDRGCCSLSAVEDAR 61 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV I + +YV ++++ FR VI PF +Y GETP PC+ CNR +KF + L +G Sbjct: 62 RVAAKIGIPYYVLNFKDDFRKQVIAPFVDAYWQGETPNPCILCNRHIKFEEFLQKALMMG 121 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D +ATGHY R V + R + +DQ+Y L+ TQQQL L PLGD+ K Sbjct: 122 FDHIATGHYGR---VVYNQATGRYALALSATTAKDQTYALYTLTQQQLSHLLLPLGDLVK 178 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 E VR++A E GL +A+K DSQ+ICFV Y V+ +A + G+ + +G +LGRH Sbjct: 179 ERVREIALEAGLPVANKRDSQEICFVTDNNYARFVEEFSARTSRPGNFILSDGTVLGRHR 238 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 G+I+YTIGQR+GLG+A PLFV L +++ VI+ E L + W Sbjct: 239 GLIHYTIGQRKGLGIAYKHPLFVKALRMDTNEVILAADEDLYATALIANNPVWSA----W 294 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + KIR P + DD V + F + + + GQA V Y D Sbjct: 295 PKLSEPLSVKAKIRYRATAAPATLYPLADDQVGLIFAEPQRAITPGQAVVCYKDD----L 350 Query: 377 VLGGGIISGSKRSDAVEESLL 397 VLGG I D + + Sbjct: 351 VLGGATIMRGATDDEILKGAK 371 >gi|322807224|emb|CBZ04798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum H04402 065] Length = 353 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 126/363 (34%), Positives = 207/363 (57%), Gaps = 19/363 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V +AMSGGVDSSV A +LK GYDVIG+ + L+ + C DARRV + Sbjct: 6 VALAMSGGVDSSVSAYILKERGYDVIGIYMDLWRDEREE-----YCNKSAAEDARRVAEK 60 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 +++ +V + E++F++ VI F Y +G TP PCV CN+T+KF + ++ GAD +A Sbjct: 61 LDIPFHVINIEKKFKDNVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEFGADFMA 120 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ R+++ + D ++DQ+Y ++ Q QL P G+ KK+ +R+ Sbjct: 121 TGHYCKI-----EERNGRKVIVKAEDDKKDQTYMMYNLKQYQLERTIMPCGEYKKDHIRE 175 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A +GLD+ +K DSQ+ICF+ + +KR +G+ V G+I+G+H GII Y Sbjct: 176 IAENIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKSKIKQGNFVDKAGKIIGKHKGIIYY 235 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A+G+P +V+ ++ ++ V++G E + + R++N++ D + Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGDEEDIFRTELIARDVNFI----PFDKLEK 291 Query: 323 GFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + K+R S P + ++ V V FE + + GQ+ VFY D ++GGG Sbjct: 292 SMELEAKVRYSAKPSKATIIPLENNKVKVVFESKQRAITKGQSVVFYDKD----MLVGGG 347 Query: 382 IIS 384 II Sbjct: 348 IIE 350 >gi|163857039|ref|YP_001631337.1| tRNA-specific 2-thiouridylase MnmA [Bordetella petrii DSM 12804] gi|205811276|sp|A9IQK6|MNMA_BORPD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|163260767|emb|CAP43069.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bordetella petrii] Length = 376 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 129/380 (33%), Positives = 184/380 (48%), Gaps = 29/380 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K RVVV MSGGVDSSV A LLK+ GY+VIG+ ++ + S+ C QD+ DA Sbjct: 12 KGRRVVVGMSGGVDSSVTAWLLKQQGYEVIGLFMKNWEDDDDSE---YCSTRQDLLDAAS 68 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + V ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 69 VADLVGVDFEYVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMTLGA 128 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R R G G R + + +D +DQSYFL Q QL FPLG++ K Sbjct: 129 EHIATGHYARVRAIAGAHG-REYQLLKALDGSKDQSYFLHRLNQAQLSRTLFPLGEIHKT 187 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A ++GL A K DS ICF+ + + + + R GDI+ GQ +GRH+G Sbjct: 188 EVRRIAHDIGLHNAAKKDSTGICFIGERPFREFLNRYLP--TEPGDILTPQGQRVGRHHG 245 Query: 259 IINYTIGQRRGLGV----------AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 + YT+GQR+GLGV + +V D + + V L +R+ Sbjct: 246 LSFYTLGQRKGLGVGGVKGSQRDDGTADAWYVARKDLQHNILYVVQGHDHPWLLSNRLQA 305 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQA 364 + +W+ E K R Q +++ G + F + + V GQ+ Sbjct: 306 LDASWVAGRAPELRGYG-----AKTRYRQADAACVLEQASQGAFELSFSQPQWAVTPGQS 360 Query: 365 CVFYTSDSNEARVLGGGIIS 384 V Y D LGGGII+ Sbjct: 361 AVLYDGDV----CLGGGIIA 376 >gi|326319478|ref|YP_004237150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidovorax avenae subsp. avenae ATCC 19860] gi|323376314|gb|ADX48583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidovorax avenae subsp. avenae ATCC 19860] Length = 403 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 122/411 (29%), Positives = 187/411 (45%), Gaps = 53/411 (12%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + +PK R+VV +SGGVDS+V A LLK+ G++V+G+ ++ + S+ C + D Sbjct: 1 MTASPKQ-RIVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---YCSSNVDF 56 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA V D I + ++ +++ V F Y AG TP P V CN +KF L Sbjct: 57 VDAAAVADVIGIEIEHVNFAAEYKDRVFAEFLREYEAGRTPNPDVLCNAEIKFKAFLDHA 116 Query: 134 RQLGADVLATGHYIRSRLYVGDDG----------------------KRRRIMCRPMDLER 171 ++GA+ +ATGHY R R D G R + + +D + Sbjct: 117 MRVGAEKIATGHYARVRRVAADPGAMSGRHDRMESHATACDSAQDPHWRYELLKGLDPAK 176 Query: 172 DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDV 231 DQSYFL Q QL FP+G+++K VR +A E+GL A K DS ICF+ + + + Sbjct: 177 DQSYFLHRLNQAQLSRTLFPVGELRKTEVRRIAEEIGLPNAKKKDSTGICFIGERPFREF 236 Query: 232 VKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM------------GEPLF 279 + R G I+ G+ LG+H G+ YT+GQR+GLG+ P F Sbjct: 237 LNRYIQHA--PGPILDDRGRKLGQHVGLSFYTLGQRQGLGIGGVKEKGAQRGGGEHAPWF 294 Query: 280 VVYLDKNSS--RVIVGP-RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP 336 V + + RV+ G L H + + +W+ C K R Q Sbjct: 295 VARKEVERNVLRVVQGHDHPWLLSHTLQATDASWVAGRPPAAGA-----CAAKTRYRQQD 349 Query: 337 VPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 V + G + F +++ V GQ+ V Y + LGGG+I+ + Sbjct: 350 AACTVTPAEGGDFALAFPEAQWAVTPGQSAVLYDGEV----CLGGGVITAA 396 >gi|209364013|ref|YP_001424605.2| tRNA-specific 2-thiouridylase MnmA [Coxiella burnetii Dugway 5J108-111] gi|207081946|gb|ABS77207.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coxiella burnetii Dugway 5J108-111] Length = 371 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 125/384 (32%), Positives = 187/384 (48%), Gaps = 27/384 (7%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 + + ++ + V +SGGVDSSV A +LK GY+VIG+ +Q + + + C Sbjct: 5 FYTTQMPNFEQNQVIAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWETD---SKDPFCT 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 A QD+ DA+ + D I + YV ++ + + N V +A G TP P V CNR +KF Sbjct: 62 AEQDLSDAKAIADHIGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKS 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL ++LGA LATGHY + + + + D +DQSYFL Q QL + Sbjct: 122 LLDHAKKLGATHLATGHYACIQ-----NENNEYRLLKSNDSHKDQSYFLHLLNQYQLANS 176 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 FP+G +K VR +A++ G K DS ICF+ + K+ D + +A G+I Sbjct: 177 VFPIGGYQKSEVRAIAKKRGFINHAKKDSTGICFIGERKFKDFLNEFL--LAQPGNIETP 234 Query: 249 NGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEV 300 G+I+G+H+GI+ YT+GQR+GL + P +VV D + +IV L Sbjct: 235 EGKIIGKHDGIMFYTVGQRKGLHIGGRPDAGEAPWYVVDKDVKRNVLIVVQGYEHPLLYS 294 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGV 359 + ++W+ D C K R Q V R D D +V FE + + Sbjct: 295 QELTCTNLHWIRDT----EPSFPLTCKAKTRCRQADQTCVVTRLDNDHCHVQFEHPQRAI 350 Query: 360 ASGQACVFYTSDSNEARVLGGGII 383 GQ+ VFY + LGGGII Sbjct: 351 TRGQSVVFYLGN----ECLGGGII 370 >gi|261363616|ref|ZP_05976499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria mucosa ATCC 25996] gi|288568144|gb|EFC89704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria mucosa ATCC 25996] Length = 367 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 123/383 (32%), Positives = 192/383 (50%), Gaps = 26/383 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 +D+ + P + ++V +SGGVDSSV AALLK+ GY V GV +Q + + C Q Sbjct: 1 MDITQQPSN--IIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 55 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D I + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 56 DSFDAIAVADIIGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLD 115 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 116 YAIEQGADTIATGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERAIFP 170 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LGD++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 171 LGDLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGK 228 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 +G H G++ YT+GQR+GLG+ GEP FV D + +IV L + + + Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMND 288 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366 +++ ++ + K R P ++ +D+ V + F++ + V GQ+ V Sbjct: 289 LSFTLPERPKEG-----RYTCKTRYRMADAPCELRYLDDETVELVFDEPQWAVTPGQSAV 343 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 Y D LGGGII + + Sbjct: 344 LYDGDV----CLGGGIIMSTDKP 362 >gi|212218582|ref|YP_002305369.1| tRNA-specific 2-thiouridylase MnmA [Coxiella burnetii CbuK_Q154] gi|259495827|sp|B6J7H5|MNMA_COXB1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|212012844|gb|ACJ20224.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coxiella burnetii CbuK_Q154] Length = 371 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 124/384 (32%), Positives = 187/384 (48%), Gaps = 27/384 (7%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 + + ++ + V +SGGVDSSV A +LK GY+VIG+ +Q + + + C Sbjct: 5 FYTTQMPNFEQNQVIAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWETD---SKDPFCT 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 A QD+ DA+ + D I + YV ++ + + N V +A G TP P V CNR +KF Sbjct: 62 AEQDLSDAKAIADHIGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKS 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL ++LGA LATGHY + + + + D +DQSYFL Q QL + Sbjct: 122 LLDHAKKLGATHLATGHYACIQ-----NENNEYRLLKSNDSHKDQSYFLHLLNQYQLANS 176 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 FP+G +K VR +A++ G K DS ICF+ + K+ D + +A G+I Sbjct: 177 VFPIGGYQKSEVRAIAKKRGFINHAKKDSTGICFIGERKFKDFLNEFL--LAQPGNIETP 234 Query: 249 NGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEV 300 G+I+G+H+GI+ YT+GQR+GL + P +VV D + +IV L Sbjct: 235 EGKIIGKHDGIMFYTVGQRKGLHIGGRPDAGEAPWYVVDKDVKRNVLIVVQGYEHPLLYS 294 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGV 359 + ++W+ D C K R Q + R D D +V FE + + Sbjct: 295 QELTCTNLHWIRDT----EPSFPLTCKAKTRCRQADQTCVITRLDNDHCHVQFEHPQRAI 350 Query: 360 ASGQACVFYTSDSNEARVLGGGII 383 GQ+ VFY + LGGGII Sbjct: 351 TRGQSVVFYLGN----ECLGGGII 370 >gi|71658016|sp|Q5F7G4|MNMA_NEIG1 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 367 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 121/381 (31%), Positives = 185/381 (48%), Gaps = 24/381 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + + C QD Sbjct: 1 MNTTSNTSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWENDDNDE---YCSIKQDS 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 58 FDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 GAD +ATGHY R G + + +D +DQSYFL+ QL FPLG Sbjct: 118 VGQGADTIATGHYARKEARNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ + Sbjct: 173 GLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTI 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G H G++ YT+GQR+GLG+ GEP FV D + +IV L + + +++ Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFY 368 + L E + C K R P + +D+ + F++ + V GQ+ V Y Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELCYLDDETAELVFDEPQWAVTPGQSAVLY 345 Query: 369 TSDSNEARVLGGGIISGSKRS 389 D LGGGII + + Sbjct: 346 DVDI----CLGGGIIQTTDKP 362 >gi|219849660|ref|YP_002464093.1| tRNA-specific 2-thiouridylase MnmA [Chloroflexus aggregans DSM 9485] gi|254811448|sp|B8G5F1|MNMA_CHLAD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|219543919|gb|ACL25657.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chloroflexus aggregans DSM 9485] Length = 359 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 152/364 (41%), Positives = 212/364 (58%), Gaps = 13/364 (3%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V+VAMSGGVDSS+ AALL+ G+ V GVT+ L++ + R+ CCA + ARRVC Sbjct: 4 VLVAMSGGVDSSLAAALLQEAGHQVTGVTMHLWDDDEQGLRESLCCAAEAATSARRVCAL 63 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + YVF+Y+ FR VI F +Y G TP PCV+CNR +KF LL R LG D +A Sbjct: 64 LGIPFYVFNYQREFRRHVIEYFIRAYTHGLTPNPCVECNRMIKFRALLDRARALGFDAVA 123 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R + D R + R +D E+DQSY L Q L L FP+G+ K+ VR+ Sbjct: 124 TGHYAR----IVRDDCGRYQLWRAVDTEKDQSYMLHMLGQADLARLLFPIGEYTKQQVRE 179 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A L A++ +SQDICFV G Y ++++ + G IV L G+ +GRH G+ Y Sbjct: 180 MAAARCLPSANREESQDICFVPDGDYRNLLRIEAPESLIPGPIVDLEGREIGRHRGLPLY 239 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 T+GQRRGLG+ GEP +VV +D + +IVGP E+L R + + W+ D + Sbjct: 240 TVGQRRGLGLGGGEPRYVVAIDPARNALIVGPVEALNRERFIVTDARWVDDA----PPAE 295 Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 F C V++R+ +P+P V DG + V+ E+ + V+ GQA VFY RVLGGG Sbjct: 296 TFHCQVQVRAHAEPLPARVSAQPDGRWLVELERPQRAVSPGQAAVFYDG----VRVLGGG 351 Query: 382 IISG 385 I+ Sbjct: 352 WIAR 355 >gi|256544685|ref|ZP_05472057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaerococcus vaginalis ATCC 51170] gi|256399574|gb|EEU13179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaerococcus vaginalis ATCC 51170] Length = 369 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 132/371 (35%), Positives = 196/371 (52%), Gaps = 24/371 (6%) Query: 26 AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85 +SGGVDSSV A LLK++GYDV G+ ++ ++ + G C A D DA +VC+ I + Sbjct: 14 GVSGGVDSSVAALLLKKEGYDVSGIFMKNWDEEDEN---GVCTAEVDYEDAVKVCNQIGI 70 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145 +Y ++E+ + + V F Y G TP P + CN+ +KF L + LGAD LATGH Sbjct: 71 PYYSINFEKEYYDRVFSYFLDEYKKGRTPNPDIMCNKEIKFKAFLDYAKDLGADYLATGH 130 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y R D + M R +D +DQ+YFL +Q Q+ D+ FP+GD+ K+ VR +A+ Sbjct: 131 YARV-----DRSEGETKMLRGLDSNKDQTYFLSQLSQDQIKDVLFPVGDLDKKEVRKIAK 185 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 E L ADK DS ICF+ + + + + A EG+IV +G I+G+H G++ +TIG Sbjct: 186 ENNLATADKKDSTGICFIGERNFNEFLSNYLP--AKEGNIVDTDGNIMGKHYGLMYHTIG 243 Query: 266 QRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVV 321 QRRGLG+ GE FV D + +IV E L +R+ ++ + + + Sbjct: 244 QRRGLGIGGEGEAWFVCGKDLEKNELIVCQGKNNEKLFSNRLIGSNLSSIS----KKGLK 299 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 F C K R Q + V+ DDG V + ++K+ V GQA VFY + LG Sbjct: 300 KEFDCTCKFRYRQKDINSHVKILDDGRVEITYDKT-KAVTPGQAAVFYDGEV----CLGS 354 Query: 381 GIISGSKRSDA 391 II + Sbjct: 355 CIIDEVYNGEK 365 >gi|254294555|ref|YP_003060578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Hirschia baltica ATCC 49814] gi|254043086|gb|ACT59881.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Hirschia baltica ATCC 49814] Length = 409 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 197/378 (52%), Positives = 260/378 (68%), Gaps = 6/378 (1%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L DK + RVV AMSGGVDS+VVAALL GYDV+GVTLQLY+ A K++G+CCAGQ Sbjct: 31 LGFDKPRSETRVVAAMSGGVDSTVVAALLHHAGYDVVGVTLQLYDHGAALKKQGACCAGQ 90 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D++DARR CD + + HYV DYE RF+ V+ FA +Y AG TP+PCV CN+TVKF DLL Sbjct: 91 DIHDARRACDALGIPHYVLDYESRFKEQVMEDFADTYLAGSTPIPCVRCNQTVKFRDLLE 150 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 ++ LGAD +ATGHYIR VG++G + R D ++DQSYFLFATT +QL LRFP Sbjct: 151 TSKDLGADCMATGHYIRR--VVGENGPE---LARAADPDKDQSYFLFATTHEQLDYLRFP 205 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG M KES R +A +GL++A K DSQDICFV GKY +V+++ G +G+IVH++G+ Sbjct: 206 LGGMNKESTRKVASALGLEVASKPDSQDICFVPDGKYTAIVEKLRPGSGRKGEIVHMDGR 265 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 +LG H G+I YT+GQRRGLGVA GEP++VV +D +VIVGPRE+LE + + E NWL Sbjct: 266 VLGEHEGVIKYTVGQRRGLGVATGEPIYVVKIDAGKRQVIVGPREALETRGLSMGESNWL 325 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 G E+A ++RS++ P + + FE +E GVA GQACV Y++ Sbjct: 326 GANSLEEACASNTPALARVRSTRPPKAGHMAMINGQPGFMFEDAEEGVAPGQACVLYST- 384 Query: 372 SNEARVLGGGIISGSKRS 389 + +RVLGGG I+G+ + Sbjct: 385 GDASRVLGGGFITGTVSA 402 >gi|253700862|ref|YP_003022051.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacter sp. M21] gi|251775712|gb|ACT18293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacter sp. M21] Length = 359 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 152/372 (40%), Positives = 208/372 (55%), Gaps = 16/372 (4%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQD 72 + R++VAMSGGVDSSV AALLK G+DVIGV+LQLY +++ G +CC+ D Sbjct: 1 MSDKSLKKRILVAMSGGVDSSVTAALLKEQGHDVIGVSLQLYERPESTPSGGKTCCSLTD 60 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 V DA RV + + V D ERF+ VI F + YAAG TP PC CN +KF LL + Sbjct: 61 VMDAARVAKRLGIPFEVVDLRERFKELVIDNFTAEYAAGRTPNPCARCNERIKFGLLLEM 120 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 T G D+LATGHY R + D + + + +D +DQSYFLF Q+QL + FP+ Sbjct: 121 TASFGTDLLATGHYAR----IEQDSEGIYQLLKGLDPGKDQSYFLFGMNQEQLSRIVFPV 176 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR+ A L +A K +SQ+ICF+ Y ++ GDIV +G Sbjct: 177 GNLEKRVVREHAARFNLPVAQKQESQEICFIPDNDYVRFLEEAGVKPEA-GDIVDGSGNK 235 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 LG H GI YT+GQRRGLG+A EPL+V ++ +SRV+VGP E L+ + E+ W Sbjct: 236 LGSHVGIHKYTVGQRRGLGIAWKEPLYVTAINGATSRVVVGPEEDLKTGGLVAGELTWTD 295 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 + F IR PVP + ++G + V+FE + V GQA V Y D Sbjct: 296 -----KPISGTFNGSCSIRYRMKPVPCSARLIEEGSIQVEFETPQRAVTPGQAVVLYQGD 350 Query: 372 SNEARVLGGGII 383 +V+GGG I Sbjct: 351 ----KVVGGGWI 358 >gi|254419496|ref|ZP_05033220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brevundimonas sp. BAL3] gi|196185673|gb|EDX80649.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brevundimonas sp. BAL3] Length = 400 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 199/370 (53%), Positives = 248/370 (67%), Gaps = 7/370 (1%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P RVV AMSGGVDS+VVAALL + GYDV+GVTLQLY+ A K+KG+CCAGQD++DAR Sbjct: 32 PVGARVVAAMSGGVDSTVVAALLHKAGYDVVGVTLQLYDHGAALKKKGACCAGQDIHDAR 91 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + I + HYV DYE RF++AVI FA SY G+TP+PC+ CN+TVKF DLL V R LG Sbjct: 92 LAAEMIGIPHYVLDYESRFKDAVIDQFADSYLKGQTPVPCIRCNQTVKFRDLLDVARDLG 151 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A+ +ATGHY+R R M + +D RDQSYFLFATTQ QL LRFPL D++K Sbjct: 152 AEAMATGHYVRRAAV-----GNRSQMRKAIDHSRDQSYFLFATTQDQLDYLRFPLADLEK 206 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR +A E+GL IA K DSQDICFV G Y ++ R+ G+IVH++G++LG H Sbjct: 207 PQVRGVAAELGLKIAAKPDSQDICFVPSGDYRTLIDRLRPQGREAGEIVHMDGRVLGTHA 266 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI +YTIGQRRGL VA+GEPLFVV L+ + RVIVGPRE+L + L E NWLGD Sbjct: 267 GITDYTIGQRRGLNVAVGEPLFVVKLEPETRRVIVGPREALLTASLTLEETNWLGDEATI 326 Query: 318 -DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 +A ++RS++ P P + DD V V F++ E GVA GQAC Y D + R Sbjct: 327 MEAAQANLPVLARVRSTRPPSPARLILIDDQVCVVFDEGEEGVAPGQACALYDPD-DPDR 385 Query: 377 VLGGGIISGS 386 VLGGG I + Sbjct: 386 VLGGGFIRDT 395 >gi|320160878|ref|YP_004174102.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaerolinea thermophila UNI-1] gi|319994731|dbj|BAJ63502.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaerolinea thermophila UNI-1] Length = 361 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 143/368 (38%), Positives = 199/368 (54%), Gaps = 14/368 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 +D VVVAMSGGVDSSV AALL GY VIG+ L+L+ S + + + CC + ARR Sbjct: 4 RDETVVVAMSGGVDSSVAAALLVEQGYRVIGMMLRLW-SEEGKEDQNRCCTPDAMALARR 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + Y D E+F+ V+ F YA+G TP PC+ CNR +++ L + LGA Sbjct: 63 VAAKLGIPFYAVDVREKFKEVVVSHFLEGYASGITPNPCLKCNRYIRWGVLHEYAQSLGA 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 ATGHY R R + R +D+E+DQSY L Q+QL FP+G+ K Sbjct: 123 TWFATGHYARLRRL----ESGEVQLLRGVDVEKDQSYVLSVLPQEQLRHTFFPVGEYHKP 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR+LAR GL +A+++DSQD+CF+ G Y D + R ++ G IV+ G+ILG H G Sbjct: 179 EVRELARRFGLPVANRADSQDLCFLAGGDYRDFLSRHAPEVSRPGVIVNRQGEILGEHQG 238 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 + YTIGQR+GLG+A PL+V+ D +R++VG L + +NW+ Sbjct: 239 LAFYTIGQRKGLGIAFPRPLYVLEKDVVRNRLVVGEEHELGRSTLIAERVNWISG----Q 294 Query: 319 AVVDGFKCFVKIRSSQ-DPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 V + VKIR + V + D V V+F+ + GQ CVFY + Sbjct: 295 PPVSSIQVEVKIRYKAREAHGVVIPLTPDRVKVEFDHPLRDITPGQQCVFYQGEI----C 350 Query: 378 LGGGIISG 385 LGGG IS Sbjct: 351 LGGGTIST 358 >gi|212212452|ref|YP_002303388.1| tRNA-specific 2-thiouridylase MnmA [Coxiella burnetii CbuG_Q212] gi|215919120|ref|NP_820145.2| tRNA-specific 2-thiouridylase MnmA [Coxiella burnetii RSA 493] gi|259495828|sp|B6IZW5|MNMA_COXB2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|206584005|gb|AAO90659.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coxiella burnetii RSA 493] gi|212010862|gb|ACJ18243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coxiella burnetii CbuG_Q212] Length = 371 Score = 454 bits (1169), Expect = e-125, Method: Composition-based stats. Identities = 125/384 (32%), Positives = 187/384 (48%), Gaps = 27/384 (7%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 + + ++ + V +SGGVDSSV A +LK GY+VIG+ +Q + + + C Sbjct: 5 FYTTQMPNFEQNQVIAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWETD---SKDPFCT 61 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 A QD+ DA+ + D I + YV ++ + + N V +A G TP P V CNR +KF Sbjct: 62 AEQDLSDAKAIADHIGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKS 121 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL ++LGA LATGHY + + + + D +DQSYFL Q QL + Sbjct: 122 LLDHAKKLGATHLATGHYACIQ-----NENNEYRLLKSNDSHKDQSYFLHLLNQYQLANS 176 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 FP+G +K VR +A++ G K DS ICF+ + K+ D + +A G+I Sbjct: 177 VFPIGGYQKSEVRAIAKKRGFINHAKKDSTGICFIGERKFKDFLNEFL--LAQPGNIETS 234 Query: 249 NGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEV 300 G+I+G+H+GI+ YT+GQR+GL + P +VV D + +IV L Sbjct: 235 EGKIIGKHDGIMFYTVGQRKGLHIGGRPDAGEAPWYVVDKDVKRNVLIVVQGYEHPLLYS 294 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGV 359 + ++W+ D C K R Q V R D D +V FE + + Sbjct: 295 QELTCTNLHWIRDT----EPSFPLTCKAKTRCRQADQTCVVTRLDNDHCHVQFEHPQRAI 350 Query: 360 ASGQACVFYTSDSNEARVLGGGII 383 GQ+ VFY + LGGGII Sbjct: 351 TRGQSVVFYLGN----ECLGGGII 370 >gi|225024394|ref|ZP_03713586.1| hypothetical protein EIKCOROL_01269 [Eikenella corrodens ATCC 23834] gi|224942775|gb|EEG23984.1| hypothetical protein EIKCOROL_01269 [Eikenella corrodens ATCC 23834] Length = 368 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 124/378 (32%), Positives = 191/378 (50%), Gaps = 24/378 (6%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P ++V +SGGVDSSV A LLK+ G+ V GV +Q + + C QD +DA Sbjct: 2 PTPQNIIVGLSGGVDSSVTAHLLKQQGHQVRGVFMQNWEDDDNDE---YCSIKQDSFDAI 58 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 V D I + + ++ ++++ V F Y AG TP P V CN +KF L + G Sbjct: 59 AVADIIGIDIDIVNFAAQYKDKVFAYFLQEYQAGRTPNPDVLCNAEIKFKCFLDYAVEQG 118 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A+ +ATGHY R ++ G + + + +D +DQSYFL+ QL FPLG ++K Sbjct: 119 AEAIATGHYARKEVHSG-----KHYLLKGLDANKDQSYFLYRLQPHQLERALFPLGHLEK 173 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR +A E GL A K DS ICF+ + + + +++ EGD+V G+++G+H Sbjct: 174 PEVRRIAAEAGLPTAAKKDSTGICFIGERPFREFLQKYL--STCEGDMVTPEGKVVGKHI 231 Query: 258 GIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313 G++ YT+GQR+GLG+ GEP FV D ++R+IV L + + +++W Sbjct: 232 GLMFYTLGQRKGLGIGGAGEPWFVAGKDLAANRLIVVQGHQHPMLFSGSLTMSQLSWTLP 291 Query: 314 GLFEDA----VVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 +A +G + K R P ++ DD + F+ + V GQ+ V Y Sbjct: 292 ENPGEAHGSRPPEG-RYTCKTRYRMADAPCQLRYLGDDSAELVFDAPQWAVTPGQSAVLY 350 Query: 369 TSDSNEARVLGGGIISGS 386 D LGGGII + Sbjct: 351 DGDV----CLGGGIIDQA 364 >gi|170755772|ref|YP_001782543.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum B1 str. Okra] gi|205810298|sp|B1ILH4|MNMA1_CLOBK RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 gi|169120984|gb|ACA44820.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum B1 str. Okra] Length = 353 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 127/363 (34%), Positives = 206/363 (56%), Gaps = 19/363 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V +AMSGGVDSSV A +LK GYDVIG+ + L+ + C DARRV + Sbjct: 6 VALAMSGGVDSSVSAYILKERGYDVIGIYMDLWRDEREE-----YCNKSAAEDARRVAEK 60 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 +++ +V + E++F++ VI F Y +G TP PCV CNRT+KF + ++ GAD +A Sbjct: 61 LDIPFHVINIEKKFKDNVIDYFIDEYLSGRTPNPCVACNRTIKFEAFFNAAKEFGADFMA 120 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ R+++ + D ++DQ+Y ++ Q QL P G+ KK+ +R+ Sbjct: 121 TGHYCKI-----EERNGRKVIVKAEDDKKDQTYMMYNLKQYQLERTIMPCGEYKKDYIRE 175 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A +GLD+ +K DSQ+ICF+ + +KR EG+ V G I+G+H GII Y Sbjct: 176 IAENIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKSKVSEGNFVDKKGNIIGKHKGIIYY 235 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A+G+P +V+ ++ ++ V++G E + + R++N++ D + Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGDEEDIFRTELIARDVNFI----PFDKLEK 291 Query: 323 GFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + K+R S P + ++ V V F+ + + GQ+ VFY D ++GGG Sbjct: 292 SMELEAKVRYSAKPSKATIIPLENNKVKVVFQNKQRAITKGQSVVFYDKD----MLVGGG 347 Query: 382 IIS 384 II Sbjct: 348 IIE 350 >gi|255066218|ref|ZP_05318073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria sicca ATCC 29256] gi|255049428|gb|EET44892.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria sicca ATCC 29256] Length = 367 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 123/383 (32%), Positives = 193/383 (50%), Gaps = 26/383 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 +D+ + P + ++V +SGGVDSSV AALLK++GY V GV +Q + + C Q Sbjct: 1 MDITQQPSN--IIVGLSGGVDSSVTAALLKQEGYQVRGVFMQNWEDDDNDE---YCSIKQ 55 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D I + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 56 DSFDAIAVADIIGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLD 115 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 116 YAIEQGADTIATGHYARKEVRNGT-----HYLLKGLDQNKDQSYFLYRLKPFQLERAIFP 170 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LGD++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 171 LGDLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGK 228 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 +G H G++ YT+GQR+GLG+ GEP FV D + +IV L + + + Sbjct: 229 TVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMND 288 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366 +++ ++ + K R P ++ +D+ V + F++ + V GQ+ V Sbjct: 289 LSFTLPERPKEG-----RYTCKTRYRMADAPCELRYLDDETVELVFDEPQWAVTPGQSAV 343 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 Y D LGGGII + + Sbjct: 344 LYDGDV----CLGGGIIMSTDKP 362 >gi|326561065|gb|EGE11430.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis 7169] Length = 392 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 131/386 (33%), Positives = 200/386 (51%), Gaps = 28/386 (7%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K PKD++V+V MSGGVDSSV A LL++ G+ V G+ ++ + S+ C A D+ D Sbjct: 15 KAPKDIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSE---YCTAMTDLAD 71 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR- 134 A+ V D I + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 72 AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131 Query: 135 ---QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R G + + R +D +DQSYFL A ++ FP Sbjct: 132 RQFGLGADFIATGHYARR----GFSQDGKAQLLRGLDANKDQSYFLHAVGGDKIAKTLFP 187 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 +G+++K VR +A++ L A+K DS ICF+ + K+ D +++ A +GDI +G Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRES---LEVHRI 303 +G H+G++ YTIGQR G+G+ EP FV++ D ++R+IVG L+ + Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSTEL 305 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVA 360 +++W + GF+C K R Q V D V V F ++ V Sbjct: 306 TAYKLDWGIAPPAQIFGKQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFGDAQRAVT 365 Query: 361 SGQACVFYTSDSNEARVLGGGIISGS 386 GQ+ VFY D LGGG+I G+ Sbjct: 366 QGQSVVFYDGDI----CLGGGVIDGT 387 >gi|299138824|ref|ZP_07032001.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidobacterium sp. MP5ACTX8] gi|298598978|gb|EFI55139.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidobacterium sp. MP5ACTX8] Length = 375 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 152/385 (39%), Positives = 219/385 (56%), Gaps = 24/385 (6%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-------SRKASKRKGSCCAG 70 P + + VAMSGGVDSS VAALL +G D+IG+TLQL+N +G CC+ Sbjct: 2 PLNNTIAVAMSGGVDSSAVAALLHAEGRDLIGLTLQLWNQRRLAGREGMPETVQGRCCSI 61 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 DVYDARRV + I + +Y+ + +ERF N V+ PF Y AG TP+PC CN +KF LL Sbjct: 62 DDVYDARRVAEQIGIPYYLVNAQERFENEVVRPFVDEYLAGRTPIPCTLCNNHLKFDQLL 121 Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 RQ+GAD +ATGHY R+ D+ + R ++ RP D +DQ+YFLF TQ QL F Sbjct: 122 LTARQIGADRIATGHYARNHY---DEARERWVLSRPADKSKDQTYFLFGLTQDQLSRTLF 178 Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-----GDI 245 PLG+M+K +VR +A + GL++A K DSQ+ICF+ G Y +K E G++ Sbjct: 179 PLGEMQKPAVRSMAADHGLELAQKPDSQEICFIPGGSYSQFLKAYLDEQGRELPDSSGEL 238 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 V +G++LG H GI +T+GQR+GLG++ +PL+V+ + +S V VG + L + Sbjct: 239 VSASGEVLGHHEGIHGFTVGQRKGLGLSSPQPLYVLNIHPDSHAVQVGTDDQLLSRTLIA 298 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQA 364 +NW+ + + +KIR +P P ++ D V F++ + + GQ+ Sbjct: 299 DRLNWVSI----PEPKEEIRVTIKIRHRHEPAPATLRVTAFDRVEATFDEPQRAITPGQS 354 Query: 365 CVFYTSDSNEARVLGGGIISGSKRS 389 VFY D V GGG I R+ Sbjct: 355 AVFYQGD----EVAGGGWIKAEDRA 375 >gi|197118358|ref|YP_002138785.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34)-thioltransferase [Geobacter bemidjiensis Bem] gi|197087718|gb|ACH38989.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34)-thioltransferase [Geobacter bemidjiensis Bem] Length = 359 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 154/373 (41%), Positives = 210/373 (56%), Gaps = 16/373 (4%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQD 72 + +++VAMSGGVDSSV AALLK G+DV+GV+LQLY +++ G +CC+ D Sbjct: 1 MSDKAGKKQILVAMSGGVDSSVTAALLKEQGHDVMGVSLQLYERPESTPSGGKTCCSLTD 60 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 V DA RV + + V D ERF+ VI F + YAAG TP PC CN +KF LL + Sbjct: 61 VMDAARVAKRLGIPFEVIDLRERFKELVIDNFTAEYAAGRTPNPCARCNERIKFGLLLDM 120 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 GAD+LATGHY R + D + + + +D +DQSYFLF Q+QL + FP+ Sbjct: 121 AASFGADLLATGHYAR----IEQDAEEIYQLLKGLDPGKDQSYFLFGMNQEQLSRIVFPV 176 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR+ A L +A K +SQ+ICF+ Y ++ GDIV +G Sbjct: 177 GNLEKRVVREHAARFNLPVAQKQESQEICFIPDNDYVRFLEEAGVRPEA-GDIVDKSGNK 235 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 LG H GI YTIGQRRGLG+A EPL+V +D +SRV+VGP E L++ + E+ W Sbjct: 236 LGSHVGIHKYTIGQRRGLGIAWKEPLYVTAIDGATSRVVVGPEEDLKIGGLVAGELTWTD 295 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 + GF IR PVP + +DG + V+FE + V GQA V Y D Sbjct: 296 -----KPISGGFNGSCSIRYRMQPVPCSARLIEDGRMQVEFETPQRAVTPGQAVVLYQGD 350 Query: 372 SNEARVLGGGIIS 384 +V+GGG I Sbjct: 351 ----KVVGGGWIK 359 >gi|225016206|ref|ZP_03705398.1| hypothetical protein CLOSTMETH_00109 [Clostridium methylpentosum DSM 5476] gi|224951028|gb|EEG32237.1| hypothetical protein CLOSTMETH_00109 [Clostridium methylpentosum DSM 5476] Length = 352 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 122/364 (33%), Positives = 191/364 (52%), Gaps = 14/364 (3%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCDT 82 ++ MSGGVDSSV AALL GY+V+G T +L+ + +CC+ D+ DAR VC Sbjct: 1 MIGMSGGVDSSVAAALLIEQGYEVVGATFRLWKPEDDLFDSEATCCSLDDINDAREVCHQ 60 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + HYV + + F+ AV+ F Y AG TP PC+ CN+ +KF LG D +A Sbjct: 61 LGIPHYVLNLKREFKEAVVQNFVEEYQAGRTPNPCIVCNQKIKFDYFYQKAAALGFDYVA 120 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R + + + + ++DQSYFL+ L + FPLG K VR+ Sbjct: 121 TGHYAR----IEQNEQGEFQLKTAAYAQKDQSYFLYGIPYPNLGHILFPLGGYTKPQVRE 176 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA + G ++ K DSQ+ICFV + Y ++R I +G+ + G +LG H GI +Y Sbjct: 177 LAEKYGFSVSHKRDSQEICFVDRNGYGTFLERFTGTIPPKGNFIDSQGTVLGEHKGIWHY 236 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 T+GQR+GLG+A G+P++V ++ + V + E R+ +N+L Sbjct: 237 TVGQRKGLGMAFGKPMYVSEINPADNTVRLVDDEENYSSRLTAERMNYL----IPHPPSK 292 Query: 323 GFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + VKIR+ + P + ++ + + F++ + + GQ+ V Y + LGGG Sbjct: 293 PVRVQVKIRNRAEFAPALLTPLSEAKIELAFDQPQRAITKGQSAVLYDGEV----CLGGG 348 Query: 382 IISG 385 II+ Sbjct: 349 IITA 352 >gi|212696912|ref|ZP_03305040.1| hypothetical protein ANHYDRO_01475 [Anaerococcus hydrogenalis DSM 7454] gi|212676202|gb|EEB35809.1| hypothetical protein ANHYDRO_01475 [Anaerococcus hydrogenalis DSM 7454] Length = 369 Score = 454 bits (1168), Expect = e-125, Method: Composition-based stats. Identities = 130/368 (35%), Positives = 193/368 (52%), Gaps = 24/368 (6%) Query: 26 AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85 +SGGVDSSV A LLK +GYDV G+ ++ ++ + G C A D DA +VC+ I + Sbjct: 14 GVSGGVDSSVAALLLKEEGYDVSGIFMKNWDEEDEN---GVCTAEVDYEDAVKVCNQIGI 70 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145 +Y ++E+ + + V F Y G TP P + CN+ +KF L + LGAD LATGH Sbjct: 71 PYYSINFEKEYYDRVFSYFLDEYKKGRTPNPDIMCNKEIKFKAFLDYAKDLGADYLATGH 130 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y R G+ M R +D +DQ+YFL +Q Q+ D+ FP+G++ K+ VR +A+ Sbjct: 131 YARVDREDGE-----TKMLRGIDSNKDQTYFLSQLSQDQIKDVLFPVGNLDKKEVRKIAK 185 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 E L ADK DS ICF+ + + + + A EG+IV +G ++G+H G++ +TIG Sbjct: 186 ENNLATADKKDSTGICFIGERNFNEFLSNYLP--AKEGNIVDTDGNVMGKHYGLMYHTIG 243 Query: 266 QRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVV 321 QRRGLG+ GE FV D + +IV E L +R+ ++ + + Sbjct: 244 QRRGLGIGGEGEAWFVCGKDLEKNELIVCQGKNNEKLFSNRLIGSNLSSIS----AKGLK 299 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 F C K R Q + V+ DDG V + ++K+ V GQA VFY + LG Sbjct: 300 KEFDCTCKFRYRQKDINSHVKILDDGKVEITYDKT-KAVTPGQAAVFYDGEV----CLGS 354 Query: 381 GIISGSKR 388 II Sbjct: 355 CIIDEVYN 362 >gi|332109252|gb|EGJ10175.1| tRNA-specific 2-thiouridylase MnmA [Rubrivivax benzoatilyticus JA2] Length = 363 Score = 453 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 124/379 (32%), Positives = 185/379 (48%), Gaps = 29/379 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVVV +SGGVDS+V A LLK+ GY+V+G+ ++ + S+ C + QD DA V Sbjct: 4 KRRVVVGLSGGVDSAVSAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSSRQDFLDAAAV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + ++ +++ V F Y+AG TP P V CN +KF L +LGA+ Sbjct: 61 ADVIGIDLEHVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMRLGAE 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R G R + + +D +DQSYFL Q QL FP+G++ K Sbjct: 121 RIATGHYARVRERDG-----RFELLKGLDPAKDQSYFLHRLNQAQLARTMFPVGELPKTE 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E+GL A K DS ICF+ + + + + R A GDI G+++GRH G+ Sbjct: 176 VRRIAAEIGLPNAKKKDSTGICFIGERPFREFLNRYLAQA--PGDIEDERGRVVGRHVGL 233 Query: 260 INYTIGQRRGLGVAM-------GEPLFVVYLDKNSS--RVIVGP-RESLEVHRIYLREIN 309 YT+GQR+GLG+ P +V + + RV+ G L + + Sbjct: 234 SFYTLGQRQGLGIGGLKSGGGEHAPWYVARKELERNVLRVVQGHDHPWLLSRTLAAGDCA 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 W+ D K R Q ++R+ + V + F + + V GQ+ V Y Sbjct: 294 WVAGTPPADGA-----LAAKTRYRQADAACTLRRDGEAVVLSFAEPQWAVTPGQSAVVYD 348 Query: 370 SDSNEARVLGGGIISGSKR 388 + LGGG+I S+ Sbjct: 349 GEV----CLGGGVIESSEP 363 >gi|310657467|ref|YP_003935188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium sticklandii DSM 519] gi|308824245|emb|CBH20283.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium sticklandii] Length = 372 Score = 453 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 120/385 (31%), Positives = 198/385 (51%), Gaps = 26/385 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVV+ MSGGVDSSV A +LK GYDV+G+ ++ ++ + G C A +D D RRV Sbjct: 2 KKRVVLGMSGGVDSSVSAVILKEAGYDVVGIFMKNWDEKDED---GVCTATEDYEDVRRV 58 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + +Y ++E+ + + V F Y G TP P V CN+ +KF+ L +L AD Sbjct: 59 ADQLGIPYYTVNFEKEYWDRVFSYFLDEYNKGRTPNPDVMCNQEIKFNAFLDYALKLDAD 118 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +A GHY R ++ + + R +D +DQ+YFL Q+ L FP+G+++K Sbjct: 119 YIAMGHYARV-----EERDGKFYLLRGVDNNKDQTYFLSRIGQKALSKSLFPIGELEKSK 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258 VR++A + L A K DS +CF+ + + + + ++ +GD+++++ G+ + +H+G Sbjct: 174 VREIAEKNELYTAKKKDSTGVCFIGERDFDAFLDKYL--LSKKGDMINVDTGKKISQHHG 231 Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLG 312 + +YT+GQR+ GV GEP FVV D + + V E+L + W Sbjct: 232 LYHYTLGQRKGIGIGGVGSGEPWFVVGKDLKKNLLYVAQGEQHEALYSTSLIGEAPAWTL 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 D + V C K R Q +PV V + +DG +++ ++ V GQ V Y +D Sbjct: 292 D----EEPVFPLHCTAKFRYRQQDIPVTVHKMEDGNIHIVYDNPVKAVTPGQVAVLYDAD 347 Query: 372 SNEARVLGGGIISGSKRSDAVEESL 396 LG II + ++ + L Sbjct: 348 I----CLGSSIIKSIEPVNSKYKYL 368 >gi|253580125|ref|ZP_04857392.1| tRNA methyl transferase [Ruminococcus sp. 5_1_39B_FAA] gi|251848644|gb|EES76607.1| tRNA methyl transferase [Ruminococcus sp. 5_1_39BFAA] Length = 360 Score = 453 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 138/365 (37%), Positives = 208/365 (56%), Gaps = 13/365 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRVC 80 + ++AMSGGVDSSV A L K G + IG T++L +N KR+ +CC+ DV DAR VC Sbjct: 3 KAIIAMSGGVDSSVAALLTKETGDECIGATMKLFHNEDIGVKREKTCCSLDDVEDARNVC 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + +YVF++ ERF+ V+ F +Y G TP PC+DCNR +KF + R+L D Sbjct: 63 YRMGIRYYVFNFSERFKEDVMDRFVDAYEHGSTPNPCIDCNRYLKFDKMFQRMRELEYDY 122 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 + TGHY R D+ K R ++ + +D +DQSY L+ TQ+QL + PLG ++K V Sbjct: 123 IVTGHYARVEY---DEEKNRYLLKKAVDDTKDQSYVLYMLTQEQLAHISLPLGGLRKTEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A + G A K DSQDICFV G Y +++ ++ GD V G ILG+H GII Sbjct: 180 REIAEKHGFVNARKHDSQDICFVPDGDYAKFIEQYTGRKSIPGDFVDTEGNILGKHKGII 239 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +YT+GQRRGLG+ L+V + +++V++G E L + ++N + +++ Sbjct: 240 HYTLGQRRGLGIPAASRLYVCDISPKTNQVVLGNNEDLFHSELTATKVNLISC----ESL 295 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + + KIR + +DGV +V F+K + + GQA V Y D V+G Sbjct: 296 KEPMRLKAKIRYRHPEQEAVAWQTEDGVLHVRFDKPQRAITRGQAVVLYDGDI----VVG 351 Query: 380 GGIIS 384 GG+I Sbjct: 352 GGVIE 356 >gi|153208378|ref|ZP_01946716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coxiella burnetii 'MSU Goat Q177'] gi|120576035|gb|EAX32659.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coxiella burnetii 'MSU Goat Q177'] Length = 362 Score = 453 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 124/379 (32%), Positives = 186/379 (49%), Gaps = 27/379 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + ++ + V +SGGVDSSV A +LK GY+VIG+ +Q + + + C A QD+ Sbjct: 1 MPNFEQNQVIAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWETD---SKDPFCTAEQDL 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ + D I + YV ++ + + N V +A G TP P V CNR +KF LL Sbjct: 58 SDAKAIADHIGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 ++LGA LATGHY + + + + D +DQSYFL Q QL + FP+G Sbjct: 118 KKLGATHLATGHYACIQ-----NENNEYRLLKSNDSHKDQSYFLHLLNQYQLANSVFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +K VR +A++ G K DS ICF+ + K+ D + +A G+I G+I+ Sbjct: 173 GYQKSEVRAIAKKRGFINHAKKDSTGICFIGERKFKDFLNEFL--LAQPGNIETPEGKII 230 Query: 254 GRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 G+H+GI+ YT+GQR+GL + P +VV D + +IV L + Sbjct: 231 GKHDGIMFYTVGQRKGLHIGGRPDAGEAPWYVVDKDVKRNVLIVVQGYEHPLLYSQELTC 290 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQA 364 ++W+ D C K R Q + R D D +V FE + + GQ+ Sbjct: 291 TNLHWIRDT----EPSFPLTCKAKTRCRQADQTCVITRLDNDHCHVQFEHPQRAITRGQS 346 Query: 365 CVFYTSDSNEARVLGGGII 383 VFY + LGGGII Sbjct: 347 VVFYLGN----ECLGGGII 361 >gi|206561667|ref|YP_002232432.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia cenocepacia J2315] gi|229486335|sp|B4EE50|MNMA_BURCJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|198037709|emb|CAR53652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia cenocepacia J2315] Length = 391 Score = 453 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 123/387 (31%), Positives = 175/387 (45%), Gaps = 37/387 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D Sbjct: 2 SKRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ +++ V F Y+AG TP P V CN +KF L L A Sbjct: 59 VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +++ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K Sbjct: 119 EMIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A ++GL A K DS ICF+ + + D + R G + +G+++G H G Sbjct: 174 KVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVVGEHIG 231 Query: 259 IINYTIGQRR-----GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT GQR+ G GEP FV D S+ + V L + ++W Sbjct: 232 LAFYTFGQRKGIGLGGSKSGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRELVAGNVSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-----------VQRNDDGVYVDFEKSEVGV 359 + + DGF C K R Q + + F+ ++ V Sbjct: 292 VAG----EPPADGFACGAKTRYRQADAACVFGLAATGAEAAGPAGEARFSLAFDDAQWAV 347 Query: 360 ASGQACVFYTSDSNEARVLGGGIISGS 386 GQ+ V Y + LGGGII + Sbjct: 348 TPGQSAVLYDGEI----CLGGGIIESA 370 >gi|165923972|ref|ZP_02219804.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coxiella burnetii RSA 334] gi|165916580|gb|EDR35184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coxiella burnetii RSA 334] Length = 362 Score = 453 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 124/379 (32%), Positives = 186/379 (49%), Gaps = 27/379 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + ++ + V +SGGVDSSV A +LK GY+VIG+ +Q + + + C A QD+ Sbjct: 1 MPNFEQNQVIAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWETD---SKDPFCTAEQDL 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ + D I + YV ++ + + N V +A G TP P V CNR +KF LL Sbjct: 58 SDAKAIADHIGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 ++LGA LATGHY + + + + D +DQSYFL Q QL + FP+G Sbjct: 118 KKLGATHLATGHYACIQ-----NENNEYRLLKSNDSHKDQSYFLHLLNQYQLANSVFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +K VR +A++ G K DS ICF+ + K+ D + +A G+I G+I+ Sbjct: 173 GYQKSEVRAIAKKRGFINHAKKDSTGICFIGERKFKDFLNEFL--LAQPGNIETPEGKII 230 Query: 254 GRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 G+H+GI+ YT+GQR+GL + P +VV D + +IV L + Sbjct: 231 GKHDGIMFYTVGQRKGLHIGGRPDAGEAPWYVVDKDVKRNVLIVVQGYEHPLLYSQELTC 290 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQA 364 ++W+ D C K R Q + R D D +V FE + + GQ+ Sbjct: 291 TNLHWIRDT----EPSFPLTCKAKTRCRQADQTCVITRLDNDHCHVQFEHPQRAITRGQS 346 Query: 365 CVFYTSDSNEARVLGGGII 383 VFY + LGGGII Sbjct: 347 VVFYLGN----ECLGGGII 361 >gi|319935498|ref|ZP_08009933.1| tRNA-specific 2-thiouridylase mnmA [Coprobacillus sp. 29_1] gi|319809529|gb|EFW05946.1| tRNA-specific 2-thiouridylase mnmA [Coprobacillus sp. 29_1] Length = 379 Score = 453 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 125/383 (32%), Positives = 191/383 (49%), Gaps = 27/383 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 +VV+ +SGGVDS+V A LLK GY+VI V ++ ++S + G+ C +D Sbjct: 6 KVVLGLSGGVDSAVAAYLLKEQGYEVICVFMRNWDSSLNNDILGNPTNNNEICPQEEDYN 65 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA++V + + + D+ + + + V F YA G TP P + CN+ +KF L + Sbjct: 66 DAKKVAEHLGLELRRVDFIKEYWDHVFTYFLEEYAKGRTPNPDILCNKHIKFKAFLDYAK 125 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 + AD +ATGHY R ++G D +M R +D +DQ+YFL Q QL FP+G+ Sbjct: 126 SIDADYIATGHYARVEHHLGQD----SLMLRGVDNNKDQTYFLCQLNQLQLQSSLFPIGE 181 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQIL 253 + K VR LA ++ L +A K DS ICF+ + + + +K A G +V + QI+ Sbjct: 182 LTKPEVRKLAEDLNLPVAHKKDSTGICFIGERDFREFLKNYIP--AKNGHMVDIQTKQIV 239 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 G H GI+ YTIGQR+GL + G+ FVV + + + + V + L + ++N Sbjct: 240 GEHQGIMYYTIGQRKGLNIGGPGDAWFVVGKEYDQNILYVCQGDQNDWLMSEGALITDVN 299 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368 W+ F C K R Q V + D+ +YV F++ V GQA VFY Sbjct: 300 WI----MSQKPESEFSCTAKFRYRQKDNDVSIHFIDETTIYVTFKQPIKAVTPGQAAVFY 355 Query: 369 TSDSNEARVLGGGIISGSKRSDA 391 D LGGG I + Sbjct: 356 NDDV----CLGGGTIEKVYKDQK 374 >gi|296112822|ref|YP_003626760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Moraxella catarrhalis RH4] gi|295920516|gb|ADG60867.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Moraxella catarrhalis RH4] Length = 392 Score = 453 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 131/386 (33%), Positives = 200/386 (51%), Gaps = 28/386 (7%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K PKD++V+V MSGGVDSSV A LL++ G+ V G+ ++ + S+ C A D+ D Sbjct: 15 KAPKDIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSE---YCTAMTDLAD 71 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR- 134 A+ V D I + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 72 AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131 Query: 135 ---QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R G + + R +D +DQSYFL A ++ FP Sbjct: 132 PQFGLGADFIATGHYARR----GFSQDGKAQLLRGLDTNKDQSYFLHAVGGDKIAKTLFP 187 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 +G+++K VR +A++ L A+K DS ICF+ + K+ D +++ A +GDI +G Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRES---LEVHRI 303 +G H+G++ YTIGQR G+G+ EP FV++ D ++R+IVG L+ + Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSDEL 305 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVA 360 +++W + GF+C K R Q V D V V F ++ V Sbjct: 306 TAYKLDWGIAPPAQIFGKQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFGDAQRAVT 365 Query: 361 SGQACVFYTSDSNEARVLGGGIISGS 386 GQ+ VFY D LGGG+I G+ Sbjct: 366 QGQSVVFYDGDI----CLGGGVIDGT 387 >gi|241758623|ref|ZP_04756737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria flavescens SK114] gi|241321134|gb|EER57330.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria flavescens SK114] Length = 367 Score = 453 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 118/381 (30%), Positives = 189/381 (49%), Gaps = 24/381 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ ++V +SGGVDSSV AALLK+ G+ + GV +Q + + C QD Sbjct: 1 MNTTNTPTNIIVGLSGGVDSSVTAALLKQQGHQISGVFMQNWEDDDNDE---YCSIKQDS 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DA V D I + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 58 FDAIAVADIIGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + GAD +ATGHY R + G + + +D +DQSYFL+ QL FPLG Sbjct: 118 IEQGADTIATGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERAIFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR LA E L A K DS ICF+ + + + +++ G +V G+++ Sbjct: 173 ELEKPEVRRLAEEFKLPTATKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGKVV 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G H G++ YT+GQR+GLG+ GEP FV D + +IV L + + +++ Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTQNELIVVQGHDHPLLYTQSLVMNDLS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 + ++ + K R P ++ +D+ V + F++ + V GQ+ V Y Sbjct: 291 FTLPERPKEG-----RYTCKTRYRMADAPCTLRYLDDETVELVFDEPQWAVTPGQSAVLY 345 Query: 369 TSDSNEARVLGGGIISGSKRS 389 D LGGGII + + Sbjct: 346 DGDV----CLGGGIIMSTDKP 362 >gi|189036221|sp|A9KE87|MNMA_COXBN RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 362 Score = 453 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 125/379 (32%), Positives = 186/379 (49%), Gaps = 27/379 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + ++ + V +SGGVDSSV A +LK GY+VIG+ +Q + + + C A QD+ Sbjct: 1 MPNFEQNQVIAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWETD---SKDPFCTAEQDL 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ + D I + YV ++ + + N V +A G TP P V CNR +KF LL Sbjct: 58 SDAKAIADHIGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 ++LGA LATGHY + + + + D +DQSYFL Q QL + FP+G Sbjct: 118 KKLGATHLATGHYACIQ-----NENNEYRLLKSNDSHKDQSYFLHLLNQYQLANSVFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +K VR +A++ G K DS ICF+ + K+ D + +A G+I G+I+ Sbjct: 173 GYQKSEVRAIAKKRGFINHAKKDSTGICFIGERKFKDFLNEFL--LAQPGNIETPEGKII 230 Query: 254 GRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 G+H+GI+ YT+GQR+GL + P +VV D + +IV L + Sbjct: 231 GKHDGIMFYTVGQRKGLHIGGRPDAGEAPWYVVDKDVKRNVLIVVQGYEHPLLYSQELTC 290 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQA 364 ++W+ D C K R Q V R D D +V FE + + GQ+ Sbjct: 291 TNLHWIRDT----EPSFPLTCKAKTRCRQADQTCVVTRLDNDHCHVQFEHPQRAITRGQS 346 Query: 365 CVFYTSDSNEARVLGGGII 383 VFY + LGGGII Sbjct: 347 VVFYLGN----ECLGGGII 361 >gi|330838778|ref|YP_004413358.1| tRNA-specific 2-thiouridylase mnmA [Selenomonas sputigena ATCC 35185] gi|329746542|gb|AEB99898.1| tRNA-specific 2-thiouridylase mnmA [Selenomonas sputigena ATCC 35185] Length = 352 Score = 453 bits (1167), Expect = e-125, Method: Composition-based stats. Identities = 141/367 (38%), Positives = 205/367 (55%), Gaps = 19/367 (5%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +V VAMSGGVDSS+ AALL+ GY+V+G+T+QL + + DARRV Sbjct: 2 KKKVAVAMSGGVDSSLCAALLQEQGYEVLGITMQLSDDSREMN-----GVSSAATDARRV 56 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + H V D+ F + V+ F + Y TP PCV CNR +KF +LLS ++ GAD Sbjct: 57 ADFLGIEHVVADFRTLFSDKVVDYFLTEYLTARTPNPCVICNRFLKFGELLSFAKEKGAD 116 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 LATGHY+R V + + + D ++DQSY L+ ++ L + FPLG +KE Sbjct: 117 FLATGHYVR----VEKEEDGSFSLKKGRDEKKDQSYVLYRLPREILSHILFPLGSYRKEE 172 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R LA+++ L +A+K++SQ+ICFV + Y + + GDIV + GQILG+H G+ Sbjct: 173 TRALAQKLSLPVANKAESQEICFVPEDDYKAYLSQHRPNRFHTGDIVDMQGQILGQHRGL 232 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YTIGQR+GLG+A PL+V+ LD+ ++RVIVG E L ++ ++NWL + Sbjct: 233 PFYTIGQRKGLGIAAAHPLYVIALDEANNRVIVGKNEELYASSLFASDVNWLM-----EE 287 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 KIR V V +DG V V F + + V GQ+ VFY+ + R++ Sbjct: 288 PTQEISVHAKIRYGSREVQANVLPLEDGAVKVSFLEPQRAVTPGQSVVFYSGE----RLV 343 Query: 379 GGGIISG 385 GG I Sbjct: 344 GGATIES 350 >gi|326569370|gb|EGE19430.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis BC8] Length = 392 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 130/386 (33%), Positives = 200/386 (51%), Gaps = 28/386 (7%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K KD++V+V MSGGVDSSV A LL++ G+ V G+ ++ + S+ C A D+ D Sbjct: 15 KALKDIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSE---YCTAMTDLAD 71 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR- 134 A+ V D I + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 72 AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131 Query: 135 ---QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R G + + R +D +DQSYFL A ++ FP Sbjct: 132 PQFGLGADFIATGHYARR----GFSQDGKAQLLRGLDANKDQSYFLHAVGGDKIAKTLFP 187 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 +G+++K VR +A++ L A+K DS ICF+ + K+ D +++ A +GDI +G Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRES---LEVHRI 303 +G H+G++ YTIGQR G+G+ EP FV++ D ++R+IVG L+ + Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSDEL 305 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVA 360 +++W + GF+C K R Q V D V V F+ ++ V Sbjct: 306 TAYKLDWGIAPPAQIFGKQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFDDAQRAVT 365 Query: 361 SGQACVFYTSDSNEARVLGGGIISGS 386 GQ+ VFY D LGGG+I G+ Sbjct: 366 QGQSVVFYDGDI----CLGGGVIDGT 387 >gi|222112576|ref|YP_002554840.1| tRNA-specific 2-thiouridylase mnma [Acidovorax ebreus TPSY] gi|254811451|sp|B9MIA2|MNMA_DIAST RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|221732020|gb|ACM34840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidovorax ebreus TPSY] Length = 370 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 122/382 (31%), Positives = 182/382 (47%), Gaps = 33/382 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVVV +SGGVDS+V A LLK+ G++V+G+ ++ + S+ C + QD DA V Sbjct: 3 KHRVVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSEF---CSSRQDFLDAASV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + ++ +++ V F Y AG TP P V CN +KF L +LGA+ Sbjct: 60 ADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAE 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R + + + +D +DQSYFL Q QL FP+GD+ K Sbjct: 120 KIATGHYARVR---QNPATGLFELLKGLDPSKDQSYFLHRLNQAQLSKTLFPVGDLHKTE 176 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A ++GL A K DS ICF+ + + + + R G I+ G+ LGRH G+ Sbjct: 177 VRRIAADIGLPNAKKKDSTGICFIGERPFREFLNRYIQHA--PGPILDDRGRKLGRHVGL 234 Query: 260 INYTIGQRRGLGVAM------------GEPLFVVYLDKNSS--RVIVGP-RESLEVHRIY 304 YT+GQR+GLG+ P FV + ++ RV+ G L HR+ Sbjct: 235 SFYTLGQRQGLGIGGVKEKGAQRGAGDHAPWFVARKELETNTLRVVQGHEHPWLLSHRLD 294 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363 ++ +W+ C K R Q V D + F +++ V GQ Sbjct: 295 AQDASWIAGHPPAAGA-----CAAKTRYRQQDAACTVLAAQGDAFSLQFPEAQWAVTPGQ 349 Query: 364 ACVFYTSDSNEARVLGGGIISG 385 + V Y + LGGG+I+ Sbjct: 350 SAVLYDGEV----CLGGGVIAA 367 >gi|50365230|ref|YP_053655.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mesoplasma florum L1] gi|81612889|sp|Q6F152|MNMA_MESFL RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|50363786|gb|AAT75771.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mesoplasma florum L1] Length = 374 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 127/379 (33%), Positives = 189/379 (49%), Gaps = 23/379 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72 +V+V +SGGVDSSV A LL + GY+V G+ ++ ++S + G+ C QD Sbjct: 2 KKKVIVGLSGGVDSSVAAYLLIQQGYEVEGLFMRNWDSSANNDILGNQEIDNDVCPQEQD 61 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DA V + + + + D+ + + V F Y G TP P + CN+ +KF L+ Sbjct: 62 YLDALEVANKLGIKLHRIDFVQEYWEYVFEYFIKEYKKGRTPNPDILCNKYIKFDKFLNH 121 Query: 133 T-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 +L AD +A GHY R ++ ++ M R +D +DQ+YFL TQ QL FP Sbjct: 122 AINELKADYIAMGHYAGVRF---NEKTKQYEMIRAVDTNKDQTYFLCQLTQNQLSKTLFP 178 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NG 250 L ++K +R +A E GL ADK DS ICF+ + ++ ++ + GDIV + Sbjct: 179 LQSLEKPEIRKIAAEQGLITADKKDSTGICFIGEREFTKFLQNYISN--QPGDIVDIKTN 236 Query: 251 QILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLR 306 ++LG+H G + YTIGQR+GL M EP +V D + + V P L + + Sbjct: 237 EVLGKHIGAMYYTIGQRKGLNLGGMKEPYYVAAKDIDKKIIYVCPASDESYLLSNNAIVT 296 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQAC 365 EINW D V+ F+C K R Q V V + + D+ V ++ V GQ Sbjct: 297 EINWSLDLKQYIDNVEEFECTAKFRYRQPDVKVRLNKIKDNEYKVSYDAIVKAVTPGQEA 356 Query: 366 VFYTSDSNEARVLGGGIIS 384 VFY +D LGGGII Sbjct: 357 VFYLNDI----CLGGGIID 371 >gi|81628239|sp|Q820W2|MNMA_COXBU RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 362 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 125/379 (32%), Positives = 186/379 (49%), Gaps = 27/379 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + ++ + V +SGGVDSSV A +LK GY+VIG+ +Q + + + C A QD+ Sbjct: 1 MPNFEQNQVIAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWETD---SKDPFCTAEQDL 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ + D I + YV ++ + + N V +A G TP P V CNR +KF LL Sbjct: 58 SDAKAIADHIGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 ++LGA LATGHY + + + + D +DQSYFL Q QL + FP+G Sbjct: 118 KKLGATHLATGHYACIQ-----NENNEYRLLKSNDSHKDQSYFLHLLNQYQLANSVFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +K VR +A++ G K DS ICF+ + K+ D + +A G+I G+I+ Sbjct: 173 GYQKSEVRAIAKKRGFINHAKKDSTGICFIGERKFKDFLNEFL--LAQPGNIETSEGKII 230 Query: 254 GRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 G+H+GI+ YT+GQR+GL + P +VV D + +IV L + Sbjct: 231 GKHDGIMFYTVGQRKGLHIGGRPDAGEAPWYVVDKDVKRNVLIVVQGYEHPLLYSQELTC 290 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQA 364 ++W+ D C K R Q V R D D +V FE + + GQ+ Sbjct: 291 TNLHWIRDT----EPSFPLTCKAKTRCRQADQTCVVTRLDNDHCHVQFEHPQRAITRGQS 346 Query: 365 CVFYTSDSNEARVLGGGII 383 VFY + LGGGII Sbjct: 347 VVFYLGN----ECLGGGII 361 >gi|326565359|gb|EGE15537.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis 12P80B1] Length = 392 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 131/386 (33%), Positives = 200/386 (51%), Gaps = 28/386 (7%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K PKD++V+V MSGGVDSSV A LL++ G+ V G+ ++ + S+ C A D+ D Sbjct: 15 KAPKDIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSE---YCTAMTDLAD 71 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR- 134 A+ V D I + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 72 AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131 Query: 135 ---QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R G + + R +D +DQSYFL A ++ FP Sbjct: 132 PQFGLGADFIATGHYARR----GFSQDGKAQLLRGLDANKDQSYFLHAVGGDKIAKTLFP 187 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 +G+++K VR +A++ L A+K DS ICF+ + K+ D +++ A +GDI +G Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRES---LEVHRI 303 +G H+G++ YTIGQR G+G+ EP FV++ D ++R+IVG L+ + Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSDEL 305 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVA 360 +++W + GF+C K R Q V D V V F ++ V Sbjct: 306 TAYKLDWGIAPPVQIFGKQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFGDAQRAVT 365 Query: 361 SGQACVFYTSDSNEARVLGGGIISGS 386 GQ+ VFY D LGGG+I G+ Sbjct: 366 QGQSVVFYDGDI----CLGGGVIDGT 387 >gi|326567524|gb|EGE17639.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis BC1] Length = 392 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 131/386 (33%), Positives = 200/386 (51%), Gaps = 28/386 (7%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K KD++V+V MSGGVDSSV A LL++ G+ V G+ ++ + SK C A D+ D Sbjct: 15 KALKDIKVIVGMSGGVDSSVSAVLLQQAGFHVEGLFMKNWEEDDGSK---YCTAMTDLAD 71 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR- 134 A+ V D I + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 72 AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131 Query: 135 ---QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R G + + R +D +DQSYFL A ++ FP Sbjct: 132 SQFGLGADFIATGHYARR----GFSQDGKAQLLRGLDANKDQSYFLHAVGGDKIAKTLFP 187 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 +G+++K VR +A++ L A+K DS ICF+ + K+ D +++ A +GDI +G Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRES---LEVHRI 303 +G H+G++ YTIGQR G+G+ EP FV++ D ++R+IVG L+ + Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSDEL 305 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVA 360 +++W + GF+C K R Q V D V V F+ ++ V Sbjct: 306 TAYKLDWGIAPPAQIFGKQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFDDAQRAVT 365 Query: 361 SGQACVFYTSDSNEARVLGGGIISGS 386 GQ+ VFY D LGGG+I G+ Sbjct: 366 QGQSVVFYDGDI----CLGGGVIDGT 387 >gi|148380860|ref|YP_001255401.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A str. ATCC 3502] gi|153934263|ref|YP_001385167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A str. ATCC 19397] gi|153935159|ref|YP_001388636.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A str. Hall] gi|205810535|sp|A7FXG3|MNMA2_CLOB1 RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|205810559|sp|A5I5Y9|MNMA2_CLOBH RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|148290344|emb|CAL84469.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A str. ATCC 3502] gi|152930307|gb|ABS35807.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A str. ATCC 19397] gi|152931073|gb|ABS36572.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A str. Hall] Length = 353 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 127/363 (34%), Positives = 209/363 (57%), Gaps = 19/363 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V +AMSGGVDSSV A +LK GYDVIG+ + L+ RKG C DARRV + Sbjct: 6 VALAMSGGVDSSVSAYILKERGYDVIGIYMDLWRDE----RKGYC-NKSAAEDARRVAEK 60 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 +++ +V + E++F++ VI F Y +G TP PCV CN+T+KF + ++ GAD +A Sbjct: 61 LDIPFHVINIEKKFKDNVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEFGADFMA 120 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ R+++ + D ++DQ+Y ++ Q QL P G+ KK+ +R+ Sbjct: 121 TGHYCKI-----EERNGRKVIVKAEDDKKDQTYMMYNLKQYQLERTIMPCGEYKKDHIRE 175 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A +GLD+ +K DSQ+ICF+ + +KR +G+ V G+I+G+H GII Y Sbjct: 176 IAENIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKSKIKQGNFVDKAGKIIGKHKGIIYY 235 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A+G+P +V+ ++ ++ V++G E + + +++N++ D + Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGDEEDIFRTELIAKDVNFI----PFDKLEK 291 Query: 323 GFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + K+R S P + ++ V V F+ + + GQ+ VFY D ++GGG Sbjct: 292 SMELEAKVRYSAKPSKATIIPLENNKVKVVFQNKQRAITKGQSVVFYDKD----MLVGGG 347 Query: 382 IIS 384 II Sbjct: 348 IIE 350 >gi|210622568|ref|ZP_03293250.1| hypothetical protein CLOHIR_01198 [Clostridium hiranonis DSM 13275] gi|210154151|gb|EEA85157.1| hypothetical protein CLOHIR_01198 [Clostridium hiranonis DSM 13275] Length = 357 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 136/366 (37%), Positives = 218/366 (59%), Gaps = 14/366 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +V++ MSGGVDSSV A LLK GYDVIGV + L N +++ + + DARRV Sbjct: 2 KKKVMLGMSGGVDSSVAAYLLKEQGYDVIGVNMMLSNDNTEEEKRMT---EDSIRDARRV 58 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + +++ +V D+ F+ VI F YA G TP PC+ CN+ +KF V + G D Sbjct: 59 AEKLDIPLHVLDFRREFKEKVIDDFIKEYAEGRTPNPCIVCNKFIKFGLFFDVAEKFGCD 118 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R D+ R ++ + ++DQ+Y L+ Q+QL + P+G+ +K++ Sbjct: 119 YVATGHYARVER---DEKTGRLVLKKGESAKKDQTYNLYNIKQEQLERILLPIGNYEKDT 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A+++GLD+ +K DSQ+ICF++ Y +K + G+ V +G +LG+HNGI Sbjct: 176 VREIAKKIGLDVHNKKDSQEICFIKDNDYVRYLKENSDIKIKTGEFVEADGTVLGKHNGI 235 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 INYTIGQR+GLG+A G+P+FVV ++ +RV++G + L + ++++N + F+ A Sbjct: 236 INYTIGQRKGLGIAFGKPMFVVDINAKKNRVVLGSNDDLFKKELVIKDVNTI---PFDFA 292 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 VD FK + K+R + P V + +D+ V FE+++ + GQ+ V Y D ++ Sbjct: 293 DVDEFKVYAKVRYAAKPSLATVTKLSDNTAKVVFEEAQRAITKGQSLVMYDGDI----LV 348 Query: 379 GGGIIS 384 GGGII Sbjct: 349 GGGIID 354 >gi|83312118|ref|YP_422382.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Magnetospirillum magneticum AMB-1] gi|123541366|sp|Q2W2V2|MNMA_MAGMM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|82946959|dbj|BAE51823.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Magnetospirillum magneticum AMB-1] Length = 373 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 196/388 (50%), Positives = 246/388 (63%), Gaps = 22/388 (5%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-----SRKASKR 63 +N+LD+DK P RVVVAMSGGVDSS VAALLK GYDV+GVTLQLY+ + R Sbjct: 1 MNTLDIDKPPSSTRVVVAMSGGVDSSAVAALLKEQGYDVVGVTLQLYDLATSGIEPGACR 60 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 +CCAG+D++DAR V D + + HYV D+EE FR V+ FA +Y TP+PC++CNRT Sbjct: 61 PNTCCAGKDIHDARAVADALGIPHYVLDFEETFRRDVVERFAQTYLEARTPVPCIECNRT 120 Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183 VKF DLL V + LG D LATGHY+R R G DG + D RDQSYFLFATT+ Sbjct: 121 VKFRDLLGVAKDLGGDALATGHYVRRRP--GVDGPE---LWTGRDPGRDQSYFLFATTRD 175 Query: 184 QLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 QL LRFPLGDM KE R +A L +A K DSQDICFV G Y +V R++ A Sbjct: 176 QLDFLRFPLGDMAGKEETRAIAARHHLPVAAKRDSQDICFVPDGDYAALVTRLHPDAARP 235 Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302 G+IV G++LGRH G+I+YTIGQRRGLG+ G PL+VV L+ + RV+VG RE L Sbjct: 236 GEIVDTAGKVLGRHGGLIHYTIGQRRGLGLGGGPPLYVVALEPETGRVVVGSREDLNCLT 295 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVAS 361 I + +NWLG E + VK+RS++ P ++R + D V + E GVA Sbjct: 296 IQVEAVNWLGGDETE------LRVAVKVRSTRPAAPALLRRLSGDRAQVILDHPEQGVAP 349 Query: 362 GQACVFYTSDSNEARVLGGGIISGSKRS 389 GQACVFY + RVLGGG I S+ + Sbjct: 350 GQACVFYQGE----RVLGGGWICPSREA 373 >gi|46447434|ref|YP_008799.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase/ antisuppressor [Candidatus Protochlamydia amoebophila UWE25] gi|81626468|sp|Q6MA75|MNMA_PARUW RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|46401075|emb|CAF24524.1| probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase/ Antisuppressor [Candidatus Protochlamydia amoebophila UWE25] Length = 376 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 129/371 (34%), Positives = 196/371 (52%), Gaps = 23/371 (6%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 VVV MSGGVDSSV A L+K GY+VIG+ ++ + + + G C + QD D R Sbjct: 2 KNQKTVVVGMSGGVDSSVSALLMKEQGYNVIGLFMKNWEEKDEN---GVCSSAQDYDDVR 58 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RVCD IN+ +Y ++ E +R V F + + G TP P + CNR +KF L +LG Sbjct: 59 RVCDHINIPYYAVNFVENYRKQVFTQFIADFQKGWTPNPDILCNREIKFKVFLEKALELG 118 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD LATGHY ++ + K + + +D +DQ+YFL+ QQ L + FP+G ++K Sbjct: 119 ADFLATGHYCQNLILD----KGSPSLVKGIDHNKDQTYFLYTLNQQILQQVLFPVGGLEK 174 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VRD+AR+ L A+K DS ICF+ + + + + A G L G+ +G+H Sbjct: 175 SQVRDIARKHQLVTAEKKDSTGICFIGERDFRSFLSQYVA--IQPGAFQTLQGKNVGKHM 232 Query: 258 GIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGD 313 G YT+GQR+GLG+ GE FVV D V V +L + +++W+ Sbjct: 233 GTAYYTLGQRKGLGIGGAGEAWFVVGKDHERGIVFVEQGANHPALYCDELIATDLSWVA- 291 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 +A + + C K+R Q+ + R ++G +V F++ + V GQ+ VFY + Sbjct: 292 ----EAPLLPYTCQSKVRYRQNDQFCTIHRIENGKAFVTFDRPQRAVTPGQSIVFYVGNI 347 Query: 373 NEARVLGGGII 383 LGGG+I Sbjct: 348 ----CLGGGVI 354 >gi|107021774|ref|YP_620101.1| tRNA-specific 2-thiouridylase MnmA [Burkholderia cenocepacia AU 1054] gi|116688721|ref|YP_834344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia cenocepacia HI2424] gi|123072405|sp|Q1BZ27|MNMA_BURCA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205811383|sp|A0K4M4|MNMA_BURCH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|105891963|gb|ABF75128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia cenocepacia AU 1054] gi|116646810|gb|ABK07451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia cenocepacia HI2424] Length = 391 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 123/387 (31%), Positives = 175/387 (45%), Gaps = 37/387 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D Sbjct: 2 SKRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ +++ V F Y+AG TP P V CN +KF L L A Sbjct: 59 VADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLDA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +++ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K Sbjct: 119 EMIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A ++GL A K DS ICF+ + + D + R G + +G+++G H G Sbjct: 174 KVREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKVVGEHIG 231 Query: 259 IINYTIGQRR-----GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT GQR+ G GEP FV D S+ + V L + ++W Sbjct: 232 LAFYTFGQRKGIGLGGSKSGSGEPWFVAAKDIASNTLYVVQGHDHPWLLSRELVAGNVSW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-----------VQRNDDGVYVDFEKSEVGV 359 + + DGF C K R Q + + F+ ++ V Sbjct: 292 VAG----EPPADGFACGAKTRYRQADAACVFGGAATGAAAAGPAGEVRFSLAFDDAQWAV 347 Query: 360 ASGQACVFYTSDSNEARVLGGGIISGS 386 GQ+ V Y + LGGGII + Sbjct: 348 TPGQSAVLYDGEI----CLGGGIIESA 370 >gi|289423552|ref|ZP_06425353.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Peptostreptococcus anaerobius 653-L] gi|289156054|gb|EFD04718.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Peptostreptococcus anaerobius 653-L] Length = 350 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 128/367 (34%), Positives = 204/367 (55%), Gaps = 22/367 (5%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +V++ MSGGVDSSV A LLK++GYDV+GV ++L++ +DV DA V Sbjct: 3 KKKVLLGMSGGVDSSVAAYLLKKEGYDVVGVNMKLWDRPDE----------KDVEDAISV 52 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C+ +++ +V D ++ F+ VI F Y AG TP PCV CN+ +KF DL +LG D Sbjct: 53 CEKLDIPFHVIDLQKEFKGKVIENFIKEYEAGHTPNPCVFCNKNIKFGDLFKKAEELGCD 112 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY L ++ K + + + +DQ+Y ++ +Q++L + FP+G K+ Sbjct: 113 YIATGHYA---LIEYNEEKGIYELKKASNSNKDQTYVMYNLSQEKLSKILFPIGKYNKDQ 169 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R++A+E+GL + +K DSQDICF+ Y +K EG V +G LG H GI Sbjct: 170 IREMAKEIGLKVYNKPDSQDICFIPDNNYERFLKEKTNIRVNEGIFVDKDGNKLGDHKGI 229 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 I+YTIGQR+GLG+ G+P +V+ ++ + +++G E L + ++ N++ + + Sbjct: 230 ISYTIGQRKGLGMTFGKPTYVIDINAKDNTIVLGDNEDLFKTELVAKDANFIPFDI--ET 287 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + K KIR S V D+ + V F++++ + GQ+ VFY D L Sbjct: 288 LDGTRKFDAKIRYSSSLSKASVTYLGDNRIRVVFDQAQRAITRGQSVVFYDGD-----CL 342 Query: 379 -GGGIIS 384 GGGII Sbjct: 343 VGGGIIE 349 >gi|298292472|ref|YP_003694411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Starkeya novella DSM 506] gi|296928983|gb|ADH89792.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Starkeya novella DSM 506] Length = 395 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 205/360 (56%), Positives = 256/360 (71%), Gaps = 6/360 (1%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA-SKRKGSCCAGQ 71 D ++P RVVVAMSGGVDSSVVAAL + GYDV+GVTLQLY+ +A R G+CCAGQ Sbjct: 6 DTSRSPSHTRVVVAMSGGVDSSVVAALYAKAGYDVVGVTLQLYDHGEAMHHRPGACCAGQ 65 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+YDAR V + + + HYV DYE RFR+AVI FA +YAAGETP+PCVDCNRTVKF DLL Sbjct: 66 DIYDARTVAEKLGIPHYVLDYESRFRHAVIERFADAYAAGETPIPCVDCNRTVKFRDLLE 125 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 R LGAD+LATGHY+ SR G RR + RP+D RDQSYFL+ATTQ+Q+ LRFP Sbjct: 126 TARDLGADILATGHYVTSRALEG----GRRALFRPLDESRDQSYFLYATTQEQIDMLRFP 181 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG+ K VR LA E GL +ADK DSQDICFV G Y +V+++ A G+IVHL+G+ Sbjct: 182 LGETTKPEVRALAEEFGLKVADKPDSQDICFVPNGHYTAIVEKLRPEAAEPGEIVHLDGR 241 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 +LG+H G++ YTIGQR+GLG+A EPL+VV +D RV+VGPR +L V I + E+NWL Sbjct: 242 VLGQHAGVMRYTIGQRKGLGIAASEPLYVVGIDAGRRRVLVGPRAALGVSAIRIDEVNWL 301 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTS 370 GD + A G +VK+RS++ PVP + + +D GV V +E GVA GQACVFY Sbjct: 302 GDETLDAAAEAGRDLYVKVRSARAPVPGHLARASDGGVEVHLAGAEEGVAPGQACVFYED 361 >gi|295104304|emb|CBL01848.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Faecalibacterium prausnitzii SL3/3] Length = 367 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 131/376 (34%), Positives = 204/376 (54%), Gaps = 13/376 (3%) Query: 15 DKNPKD-MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQD 72 +NP + ++AMSGGVDSSV A L+++ GYD G+T++L +N +CC+ +D Sbjct: 3 TQNPANRPHALIAMSGGVDSSVAACLMQQAGYDCTGITMRLTHNETLGQSGYQTCCSEKD 62 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 + DA V +++ + V D+ FR +I F Y AG TP PC+DCN+ +KF LL Sbjct: 63 IEDAAEVAFALDMPYQVLDFTADFRAQIIEKFIRVYEAGGTPNPCIDCNKYMKFRHLLDW 122 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + G + + TGHY R D R ++ + +D +DQSY L+ TQ+QL +R PL Sbjct: 123 AEEHGMEYVVTGHYARVE---QDAATGRWLLKKGLDEGKDQSYVLYNLTQEQLAHIRLPL 179 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G + K VR +A+E A K DSQDICFV G Y +++ GD + +G++ Sbjct: 180 GALHKTEVRKIAQEHSFINAQKHDSQDICFVPDGDYARFMEQFTGKHYPAGDFLDRSGKV 239 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G H+G + YT+GQR+GLG+A+G P++V D ++ V VGP L +Y ++NW+ Sbjct: 240 VGTHSGAVRYTLGQRKGLGLALGAPVYVCGKDMQANTVTVGPESELFDRIVYAEDVNWIA 299 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 A+ + + R Q V ++G ++F++ + GQA V Y D Sbjct: 300 I----PALTGPLRVTARTRYHQAEQQATVYPAENGFRLEFDQPQRAPTPGQAAVLYQGDV 355 Query: 373 NEARVLGGGIISGSKR 388 VLGGG I+ ++ Sbjct: 356 ----VLGGGTITRVEK 367 >gi|161830166|ref|YP_001597021.1| tRNA-specific 2-thiouridylase MnmA [Coxiella burnetii RSA 331] gi|189040503|sp|A9NDN1|MNMA_COXBR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|161762033|gb|ABX77675.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coxiella burnetii RSA 331] Length = 362 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 125/379 (32%), Positives = 186/379 (49%), Gaps = 27/379 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + ++ + V +SGGVDSSV A +LK GY+VIG+ +Q + + + C A QD+ Sbjct: 1 MPNFEQNQVIAVGLSGGVDSSVAALVLKEKGYEVIGLFMQNWETD---SKDPFCTAEQDL 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ + D I + YV ++ + + N V +A G TP P V CNR +KF LL Sbjct: 58 SDAKAIADHIGIPLYVVNFSKAYWNHVFQHCLDEFAQGRTPNPDVWCNREIKFKSLLDHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 ++LGA LATGHY + + + + D +DQSYFL Q QL + FP+G Sbjct: 118 KKLGATHLATGHYACIQ-----NENNEYRLLKSNDSHKDQSYFLHLLNQYQLANSVFPIG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +K VR +A++ G K DS ICF+ + K+ D + +A G+I G+I+ Sbjct: 173 GYQKSEVRAIAKKRGFINHAKKDSTGICFIGERKFKDFLNEFL--LAKPGNIETSEGKII 230 Query: 254 GRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 G+H+GI+ YT+GQR+GL + P +VV D + +IV L + Sbjct: 231 GKHDGIMFYTVGQRKGLHIGGRPDAGEAPWYVVDKDVKRNVLIVVQGYEHPLLYSQELTC 290 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQA 364 ++W+ D C K R Q V R D D +V FE + + GQ+ Sbjct: 291 TNLHWIRDT----EPSFPLTCKAKTRCRQADQTCVVTRLDNDHCHVQFEHPQRAITRGQS 346 Query: 365 CVFYTSDSNEARVLGGGII 383 VFY + LGGGII Sbjct: 347 VVFYLGN----ECLGGGII 361 >gi|46202527|ref|ZP_00053063.2| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Magnetospirillum magnetotacticum MS-1] Length = 373 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 193/388 (49%), Positives = 248/388 (63%), Gaps = 22/388 (5%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-----SRKASKR 63 +NSLD+DK RVVVAMSGGVDSS VAALLK GYDV+GVTLQLY+ + R Sbjct: 1 MNSLDIDKPASATRVVVAMSGGVDSSAVAALLKEQGYDVVGVTLQLYDLATSGIEPGACR 60 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 +CCAG+D++DAR V D + + HYV D+EE FR V+ FA +Y +TP+PC++CNRT Sbjct: 61 PNTCCAGKDIHDARAVADALGIPHYVLDFEETFRRDVVERFAQTYLEAKTPVPCIECNRT 120 Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183 VKF DLL V + LGAD LATGHY+R R G + M D RDQSYFL+ATT+ Sbjct: 121 VKFRDLLGVAKDLGADALATGHYVRRRS-----GPQGPEMWAGRDPGRDQSYFLYATTRA 175 Query: 184 QLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 QL LRFPLGDM KE R +A L +A K DSQDICFV G Y +V R++ A Sbjct: 176 QLDFLRFPLGDMSGKEETRAIAARHHLPVAAKRDSQDICFVPDGDYAALVTRLHPEAARP 235 Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302 G+IV +G++LGRH G+I+YTIGQRRGLG+ G PL+VV L+ + RV+VG R+ L+ Sbjct: 236 GEIVDSSGKVLGRHEGLIHYTIGQRRGLGLGGGPPLYVVALEPETDRVVVGGRQDLDCPV 295 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVAS 361 + + +NWLG E + VK+RS++ P ++R +G V + E GVA Sbjct: 296 VPVEAVNWLGGDETE------LRVAVKVRSTRPAAPALLRRLPNGRAEVILDHPEQGVAP 349 Query: 362 GQACVFYTSDSNEARVLGGGIISGSKRS 389 GQACVFY + RVLGGG IS + + Sbjct: 350 GQACVFYQGE----RVLGGGWISRVREA 373 >gi|315167557|gb|EFU11574.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Enterococcus faecalis TX1341] Length = 351 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 121/367 (32%), Positives = 182/367 (49%), Gaps = 26/367 (7%) Query: 39 LLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRN 98 LLK GYDVIG+ ++ ++ + G C A +D D +V D I + +Y ++E+ + + Sbjct: 2 LLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKDVAKVADQIGIPYYSVNFEKEYWD 58 Query: 99 AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGK 158 V F + Y G TP P V CN+ +KF L QLGAD +ATGHY + V D Sbjct: 59 RVFEYFLAEYRLGRTPNPDVMCNKEIKFKAFLDYAMQLGADYVATGHYAQ----VETDEN 114 Query: 159 RRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQ 218 M R +D +DQ+YFL +Q QL FPLG M+K VR +A GL A K DS Sbjct: 115 GVVHMLRGIDNNKDQTYFLSQLSQAQLAKTMFPLGGMEKSEVRAIAERAGLATAKKKDST 174 Query: 219 DICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI----GQRRGLGVAM 274 +CF+ + + + + A +G++V +G+I G+H+G++ YTI G G G Sbjct: 175 GVCFIGEKNFKEFLSNYLP--AKKGNMVTEDGEIKGQHDGLMYYTIGQRQGLGIGGGGKT 232 Query: 275 GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR 331 EP FV+ D ++ + VG E L + E+++ D + F C K R Sbjct: 233 QEPWFVIGKDLTTNTLYVGQGFHHEKLYATHLEASEVHFTVDT----PMPKEFDCTAKFR 288 Query: 332 SSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389 Q +PV V ++DG V F++ V GQA VFY LGGG+I + + Sbjct: 289 YRQADIPVHVSLSEDGTKATVTFKEPARAVTPGQAVVFYDG----MECLGGGLIDRAYQD 344 Query: 390 DAVEESL 396 + + + Sbjct: 345 EKELQYV 351 >gi|223936336|ref|ZP_03628248.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [bacterium Ellin514] gi|223894854|gb|EEF61303.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [bacterium Ellin514] Length = 349 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 142/358 (39%), Positives = 201/358 (56%), Gaps = 12/358 (3%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSS AALL GYDVIG+TL+L+ ++ + CC Q V DAR V + + + Sbjct: 1 MSGGVDSSAAAALLLEQGYDVIGITLKLWPQDCVNRAEDKCCGPQAVMDARSVSNKLGIP 60 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 +Y+ D F+ VI FA Y AG TP PCV CN +KF L+S +QLGA+ +ATGH+ Sbjct: 61 YYLVDESADFQKQVIGYFAEEYKAGRTPNPCVMCNEKLKFGTLISRAQQLGAEYIATGHF 120 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 R+ R ++ R D +DQSYFLF+ Q QL FPLG + K R +AR+ Sbjct: 121 ARTEKSAD---GSRMLLKRGRDPRKDQSYFLFSLRQDQLARTIFPLGQLTKTDTRTVARQ 177 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 L ADK +S +ICFV Y +++ N +G+IV+++G +LG+H+GI YTIGQ Sbjct: 178 CELKTADKEESMEICFVPDNDYGKFLQQANLVKKHKGEIVNVHGHVLGQHDGIEFYTIGQ 237 Query: 267 RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKC 326 RRGLG++ +PL+VV LD ++RV+VG +L+ + NW+ + + F+ Sbjct: 238 RRGLGISSAKPLYVVELDAINNRVMVGDESALDRDEFTVERCNWIPFA----SPPETFEV 293 Query: 327 FVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 KIR + + +G V + + GQACVFY D V+GGG I Sbjct: 294 SAKIRYNHPGTGATITPQPNGTAKVKLHVPQRAITPGQACVFYQDD----LVVGGGWI 347 >gi|268316383|ref|YP_003290102.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Rhodothermus marinus DSM 4252] gi|262333917|gb|ACY47714.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Rhodothermus marinus DSM 4252] Length = 382 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 141/373 (37%), Positives = 201/373 (53%), Gaps = 20/373 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG---SCCAGQDVYD 75 + RV+VAMSGGVDSSV AALL GY+V+G+T++ ++ + R G CC+ + + D Sbjct: 3 RHGRVLVAMSGGVDSSVTAALLHEQGYEVVGITMKTWDYTSSGVRTGKEVGCCSLESMND 62 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 AR V + H++ D E F + VI F Y AG TP PC+ CN +K++ LL + Sbjct: 63 ARAVAVRLGFPHFIVDIREEFGDWVIERFTEEYLAGRTPNPCILCNTHIKWAALLRRADR 122 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LG D +ATGHY R R D+ R ++ R DL +DQSY L+ Q+ L PLGD Sbjct: 123 LGCDYIATGHYARIRY---DESLGRYVISRGRDLNKDQSYVLWGIAQEHLARTLLPLGDY 179 Query: 196 KKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQ 251 K +R +A EMG + +A K DS +ICF+ Y +++ + G V +G Sbjct: 180 TKPEIRRMAAEMGFERLAQKPDSYEICFIPDNDYRRFLRQRVPDLDRKVGPGKFVLKDGT 239 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 ++G H G YTIGQR GLG+A+G P +V ++D ++ + VGPRE L R+ R+IN + Sbjct: 240 VVGTHRGYPFYTIGQRHGLGLALGYPAYVTHIDSETNTITVGPREELLRQRLVARQINLV 299 Query: 312 G-DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 L E+ G KIR + P V + D ++V F + + GQA V Y Sbjct: 300 KYPDLREERPAIG-----KIRYKDEGAPCLVWQEGDALHVAFAEPRPAITPGQAVVLYEG 354 Query: 371 DSNEARVLGGGII 383 D VL GG I Sbjct: 355 DD----VLAGGWI 363 >gi|254523199|ref|ZP_05135254.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Stenotrophomonas sp. SKA14] gi|219720790|gb|EED39315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Stenotrophomonas sp. SKA14] Length = 380 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 131/393 (33%), Positives = 186/393 (47%), Gaps = 32/393 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V +SGGVDSSV A L + G V G+ +Q + A G C A D DA VC Sbjct: 5 RVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + V F + YAAG TP P V CNR VKF L R+LGA+ + Sbjct: 61 LLGIPFHFRDFSSEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R G + ++ R D +DQSYFL QQQL FP+GD++K +R Sbjct: 121 ATGHYARVTQRGG-----QWLLLRGADRSKDQSYFLHQLGQQQLAATLFPIGDLEKSDLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGII 260 +AR++GL K DS ICF+ + + + + R A G I+ +G ++ H G+ Sbjct: 176 RIARDVGLPTHAKKDSTGICFIGERDFREFLGRYLP--AKPGQILDPADGSVIAEHPGVF 233 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLG 312 +T+GQR GL + P +VV D S+ + V + R+ +W+ Sbjct: 234 YFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSRWMLSDRLRSETAHWIA 293 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 F+C + R Q P V+ DDG V V F + + V GQ+ V Y D Sbjct: 294 GS----PPARRFECTAQTRYRQPDEPCTVEVLDDGSVLVSFARPQRAVTPGQSLVLYDGD 349 Query: 372 SNEARVLGGGIISGSKRSDAVEESLLSVIGDEF 404 LGG +I+ + DA E L F Sbjct: 350 V----CLGGAVIAAT---DAPLEQRLRTTPSPF 375 >gi|240117158|ref|ZP_04731220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae PID1] gi|268602848|ref|ZP_06137015.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae PID1] gi|268586979|gb|EEZ51655.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria gonorrhoeae PID1] Length = 383 Score = 451 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 121/383 (31%), Positives = 186/383 (48%), Gaps = 24/383 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + + C Q Sbjct: 15 LRMNTTSNTSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWENDDNDE---YCSIKQ 71 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 72 DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 131 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 132 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 186 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 187 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGK 244 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 +G H G++ YT+GQR+GLG+ GEP FV D + +IV L + + + Sbjct: 245 TIGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMND 304 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACV 366 +++ L E + C K R P + +D+ + F++ + V GQ+ V Sbjct: 305 LSFT---LPERPKAGRYTC--KTRYRMADAPCELCYLDDETAELVFDEPQWAVTPGQSAV 359 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 Y D LGGG I + + Sbjct: 360 LYDVDI----CLGGGGIQTTDKP 378 >gi|238926764|ref|ZP_04658524.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Selenomonas flueggei ATCC 43531] gi|238885296|gb|EEQ48934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Selenomonas flueggei ATCC 43531] Length = 366 Score = 451 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 148/372 (39%), Positives = 202/372 (54%), Gaps = 14/372 (3%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-SCCAGQDVY 74 + + RVVVAMSGGVDSSV AALL+ GY+V+GVT++L + + G SCC+ V Sbjct: 4 QRMEKQRVVVAMSGGVDSSVTAALLQEQGYEVVGVTMRLSEEGRDADPDGRSCCSLSSVD 63 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DARRV D + + HYV D+ E F+ VI F YA G TP PC+ CNR +KF LL R Sbjct: 64 DARRVADILGIPHYVMDFTEPFQQLVIDYFTQEYARGRTPNPCIACNRYIKFEGLLGKIR 123 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGA +ATGHY R G + + +D +DQSY L+ TQ+ + + FPLGD Sbjct: 124 ALGAQHIATGHYARITRT----GDGIYHLRKGIDTAKDQSYVLYHLTQKMMDHVLFPLGD 179 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 +K+ +R +A + GL +A K++SQ+ICFV Y ++ G I G ILG Sbjct: 180 YRKDEIRHMAEDYGLPVAHKAESQEICFVPHDDYKSYLRMHALQTMRPGAITDRAGHILG 239 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H GI YTIGQRRGLG++ PL+V+ LD +RVIVG + + + ++W Sbjct: 240 THEGIAFYTIGQRRGLGISAEHPLYVIALDAAENRVIVGASDEVFACALTASNLSWT--- 296 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 KIR + +++ DG V V F + + V GQ+ VFY D+ Sbjct: 297 -LPQPPHAPRSVRAKIRYGKREADAWMEPQGDGTVAVHFSEPQRAVTPGQSIVFYEGDA- 354 Query: 374 EARVLGGGIISG 385 VLGGG I Sbjct: 355 ---VLGGGSIDR 363 >gi|168181589|ref|ZP_02616253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum Bf] gi|237796359|ref|YP_002863911.1| tRNA-specific 2-thiouridylase MnmA [Clostridium botulinum Ba4 str. 657] gi|182675018|gb|EDT86979.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum Bf] gi|229264171|gb|ACQ55204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum Ba4 str. 657] Length = 353 Score = 451 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 125/363 (34%), Positives = 205/363 (56%), Gaps = 19/363 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V +AMSGGVDSSV A +LK GYDVIG+ + L+ + C DARRV + Sbjct: 6 VALAMSGGVDSSVSAYILKERGYDVIGIYMDLWRDEREE-----YCNKSAAEDARRVAEK 60 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 +++ +V + + F+ VI F Y +G TP PCV CN+T+KF + ++ GAD +A Sbjct: 61 LDIPFHVINIGKEFKANVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEFGADFMA 120 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ RR+++ + D ++DQ+Y ++ Q QL P G+ +KE +R+ Sbjct: 121 TGHYCKI-----EERNRRKVIVKAEDDKKDQTYMMYNLKQYQLERTIMPCGEYRKEHIRE 175 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A +GLD+ +K DSQ+ICF+ + +KR EG+ V G+I+G+H GII Y Sbjct: 176 IAENIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKSKVSEGNFVDKAGKIIGKHKGIIYY 235 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A+G+P +V+ ++ ++ V++G E + + +++N++ D + Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGDEEDIFHTELIAKDVNFI----PFDKLEK 291 Query: 323 GFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + K+R S P + ++ V V F+ + + GQ+ VFY D ++GGG Sbjct: 292 SMELEAKVRYSAKPSKATIIPLGNNKVKVVFKNKQRAITKGQSVVFYDKD----MLVGGG 347 Query: 382 IIS 384 II Sbjct: 348 IIE 350 >gi|119899062|ref|YP_934275.1| tRNA-specific 2-thiouridylase MnmA [Azoarcus sp. BH72] gi|205812510|sp|A1K983|MNMA_AZOSB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|119671475|emb|CAL95388.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Azoarcus sp. BH72] Length = 365 Score = 451 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 120/378 (31%), Positives = 182/378 (48%), Gaps = 29/378 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+VVV MSGGVDSSV A LLK+ GY+V G+ ++ + + C QD+ D VC Sbjct: 1 MKVVVGMSGGVDSSVTALLLKQQGYEVTGLFMKNWEDDDDDE---YCSTRQDLVDVASVC 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + V ++ +++ V F Y AG TP P + CN +KF L QLGA+ Sbjct: 58 DVIGIDLEVVNFSAEYKDRVFADFLREYEAGRTPNPDILCNSEIKFRCFLDHAMQLGAER 117 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + R ++ +DG+ + + D +DQSYFL+ Q QL FPLG + K V Sbjct: 118 IATGHYAQVREWI-NDGRSEFQLLKAEDGTKDQSYFLYRLNQAQLAKTLFPLGGLYKREV 176 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259 R +A GL +A K DS ICF+ + + + + R G+I L + ++LG H G+ Sbjct: 177 RKIAEAAGLHVATKKDSTGICFIGERPFREFLMRYLP--TKPGEIRCLDDDRVLGEHQGL 234 Query: 260 INYTIGQRRGLGVAM----------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 + +TIGQR+GL + E +V D ++ + V +L R+ Sbjct: 235 MYHTIGQRKGLHIGGIKGNQDEAGEHEAWYVAKKDVKANVLYVVQGHDHPALLKDRLLAT 294 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365 ++NW+ V K R +P + +G + F + + GQ+ Sbjct: 295 DLNWIAGRDPRTHWV----YTAKPRYRTADMPCEIDALGEGRAEIAFATPQWALTPGQSV 350 Query: 366 VFYTSDSNEARVLGGGII 383 V Y LGGG+I Sbjct: 351 VVY----ESKVCLGGGVI 364 >gi|292670858|ref|ZP_06604284.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Selenomonas noxia ATCC 43541] gi|292647479|gb|EFF65451.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Selenomonas noxia ATCC 43541] Length = 365 Score = 451 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 153/373 (41%), Positives = 212/373 (56%), Gaps = 14/373 (3%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQD 72 +++ K RVVVAMSGGVDSS+ AALL+ GYDV+GVT++L +R A SCC+ Sbjct: 1 MERKMKKERVVVAMSGGVDSSLAAALLQERGYDVVGVTMRLSAENRDAPSNDRSCCSLIS 60 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 V DARRV D + + HYV D+ E F++AVI F + Y G TP PC+ CNR +KF LL Sbjct: 61 VDDARRVADVLGIPHYVMDFTEPFQHAVIDYFFNEYLHGRTPNPCIACNRFIKFEGLLHK 120 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 +++LGA +ATGHY R G DG R + + +DLE+DQSY L+ Q+ L + PL Sbjct: 121 SKELGASYIATGHYARIDH--GKDGTYR--LRKGLDLEKDQSYVLYHMNQEILAHVLLPL 176 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G K R +A + L +A K++SQ+ICFV + Y ++ G+IV G + Sbjct: 177 GVFSKHETRRMAEQYHLPVAYKAESQEICFVPRDDYKSYLREKRPESCCPGNIVDRAGNV 236 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 LG H GI YTIGQR+GLG+A +PL+V LD +RV+VG + + ++NW Sbjct: 237 LGIHEGIAFYTIGQRKGLGIAATQPLYVTALDTLHNRVVVGTANEVYARGLTASDLNWT- 295 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 A+ + KIR + + + DG V+V F + + V GQ+ VFY D Sbjct: 296 ---MPIALDNPRTVQAKIRYGKRSASATITSHKDGEVHVLFSELQRAVTPGQSIVFYEDD 352 Query: 372 SNEARVLGGGIIS 384 VLGGGII Sbjct: 353 V----VLGGGIID 361 >gi|332040942|gb|EGI77312.1| tRNA-specific 2-thiouridylase MnmA [Hylemonella gracilis ATCC 19624] Length = 386 Score = 451 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 121/399 (30%), Positives = 192/399 (48%), Gaps = 41/399 (10%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 +DK+ + RVVV +SGGVDS+V A LLK+ G+DV+G+ ++ + ++ C + D Sbjct: 1 MDKSNRGQRVVVGLSGGVDSAVTAYLLKKQGHDVVGIFMKNWEDDDDNE---YCSSNVDF 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA V D I + ++ +++ V F Y AG TP P V CN +KF L Sbjct: 58 VDAAAVADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +LGA+ +ATGHY R RL ++ + + + +D +DQSYFL Q QL FP+G Sbjct: 118 MRLGAEKIATGHYARVRL---NEKTGKHELLKGLDPSKDQSYFLHRLNQAQLSKTLFPVG 174 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEG------- 243 ++ K VR +A E+GL A K DS ICF+ + + + + R G +G Sbjct: 175 ELHKTEVRRIAAEIGLPNAKKKDSTGICFIGERPFREFLNRYIQKEPGPIKDGTPLPGSP 234 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAM------------GEPLFVVYLDKNSSRVI 291 D +G+++G+H G+ YT+GQR+GLG+ EP FV D + +++ Sbjct: 235 DYERAHGRVIGKHVGLSFYTLGQRQGLGIGGIKDKGAQKGGGEHEPWFVARKDMDKNQLW 294 Query: 292 VGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDG 347 V L+ H ++ + +W+ K R Q + D G Sbjct: 295 VVQGHDHPLLQSHGLHALDASWIAGEPPLPG-----DLHAKARYRQADAACTLDHVEDSG 349 Query: 348 VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 + F +++ V GQ+ V Y + LGGGI+ + Sbjct: 350 FSLRFPEAQWAVTPGQSAVLYDGEV----CLGGGIVQQA 384 >gi|299143928|ref|ZP_07037008.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518413|gb|EFI42152.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 355 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 132/368 (35%), Positives = 185/368 (50%), Gaps = 25/368 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V++ MSGGVDSSV AALLK GYDV V ++ ++ G C A +D D RVC Sbjct: 7 VILGMSGGVDSSVCAALLKEQGYDVTAVFMKNWDEEDDD---GVCTATEDYLDVIRVCSE 63 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + +Y ++E+ +++ V F S Y G TP P V CN +KF L + +D +A Sbjct: 64 LGIKYYTVNFEKEYKDRVFSYFLSEYEKGRTPNPDVMCNTEIKFKAFLEFAMKFNSDYIA 123 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 GHY R+ G + + R +D +DQSYFL + L FP+G+MKKE VR+ Sbjct: 124 MGHYARTLKKDG-----KTYLLRGLDENKDQSYFLSRVPEAALSKTLFPIGNMKKEQVRE 178 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA++ L A K DS ICF+ + + + + + EGDI ++GQ LG+H+G+++Y Sbjct: 179 LAQKYNLATAKKKDSTGICFIGERNFNNFLDKFL--FTKEGDIYSVDGQYLGKHSGLMHY 236 Query: 263 TIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLF 316 TIGQRR G+ GEP FV D ++R+IV +L W+ Sbjct: 237 TIGQRRGMGLGGMGSGEPFFVADKDLKNNRLIVAQGLKHPALYKKETICENAFWIT---- 292 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 D KC KIR + V +D + V FE GV GQ VFY D Sbjct: 293 -DTPKFPLKCTGKIRYRAKDENMTVYLENDELKVIFENPLKGVTPGQVLVFYQGDI---- 347 Query: 377 VLGGGIIS 384 LG GII Sbjct: 348 CLGSGIIK 355 >gi|261379871|ref|ZP_05984444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria subflava NJ9703] gi|284797568|gb|EFC52915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria subflava NJ9703] Length = 367 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 116/381 (30%), Positives = 190/381 (49%), Gaps = 24/381 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ + ++V +SGGVDSSV AALLK+ G+ + GV +Q + + C QD Sbjct: 1 MNTHNTPANIIVGLSGGVDSSVTAALLKQQGHQISGVFMQNWEDDDNDE---YCSIKQDS 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DA V D I + + ++ ++++ V F Y+AG TP P + CN +KF L Sbjct: 58 FDAIAVADIIGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDILCNAEIKFKCFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + GAD +ATGHY R + G + + +D +DQSYFL+ QL FPLG Sbjct: 118 IEQGADTIATGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERSIFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR LA E L A K DS ICF+ + + + +++ G +V G+++ Sbjct: 173 ELEKPEVRRLAEEFKLPTATKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGKVV 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G H G++ YT+GQR+GLG+ GEP FV D + +IV L + + +++ Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTQSLVMNDLS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 + ++ + K R P ++ +D+ + + F++ + V GQ+ V Y Sbjct: 291 FTLPERPKEG-----RYTCKTRYRMADAPCTLRYLDDETIELVFDEPQWAVTPGQSAVLY 345 Query: 369 TSDSNEARVLGGGIISGSKRS 389 D LGGGII + + Sbjct: 346 DGDV----CLGGGIIMSTDKP 362 >gi|78485443|ref|YP_391368.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thiomicrospira crunogena XCL-2] gi|123555534|sp|Q31GM9|MNMA_THICR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|78363729|gb|ABB41694.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thiomicrospira crunogena XCL-2] Length = 379 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 120/383 (31%), Positives = 197/383 (51%), Gaps = 26/383 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 ++ +++V+V +SGGVDSSV A LLK+ GYDV G+ ++ + C A +D+ D Sbjct: 6 QDNSNIKVIVGLSGGVDSSVTALLLKQQGYDVEGLFMKNWEGDDTED---YCPAAEDLKD 62 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 +C+ +++ +V ++ + + V F + Y +G TP P + CN+ VKF L Sbjct: 63 VLAICEKLDIPLHVENFSGEYWDRVFEHFLAEYQSGRTPNPDILCNKEVKFKAFLEHAMT 122 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD +ATGHY R + D + + + +D +DQSYFL+ Q QL FP+G++ Sbjct: 123 LGADYIATGHYAR----ISRDENGQCYLLKGLDNNKDQSYFLYTLQQHQLSKSMFPIGEL 178 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR LA E L DK DS ICF+ + K+ D +++ A GDIV+ G+++G Sbjct: 179 EKPYVRQLAEEADLITHDKKDSTGICFIGERKFKDFLQQFLP--AQPGDIVNTEGEVIGH 236 Query: 256 HNGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRV--IVGPRESLEVHR-IYLRE 307 H G++ +T+GQR+GLG+ G P F + ++++ + G L H + Sbjct: 237 HEGLMYHTLGQRKGLGIGGGFGDSGLPWFSADKNLETNQLIAVQGSDHPLLNHAFLTADT 296 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 +W+ K+R Q P + +G + V F++ + + GQ+ V Sbjct: 297 CDWVSGHCPALKQA----LKAKVRYRQPEQPCQILSEKNGEIIVQFDEEQTAITPGQSVV 352 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 FY ++ LGG II+G S Sbjct: 353 FYEGET----CLGGAIITGRYHS 371 >gi|94676746|ref|YP_588863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|166991122|sp|Q1LT51|MNMA_BAUCH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|94219896|gb|ABF14055.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 368 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 115/375 (30%), Positives = 192/375 (51%), Gaps = 28/375 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + +V+V MSGGVDSSV A LL + GY V G+ ++ + + C +D+ DA+ V Sbjct: 5 NKKVIVGMSGGVDSSVSALLLLQQGYTVEGLFMKNWEEDD---HEQYCTVAKDLADAQAV 61 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGA 138 C+ + + + ++ + + V F + Y G TP P + CN+ +KF L + LGA Sbjct: 62 CNQLGIILHKVNFAAEYWDNVFEYFLAEYQVGRTPNPDILCNKNIKFKVFLDFATQNLGA 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY+ + D + + R +D ++DQSYFL+ QQ+ FPLG + K Sbjct: 122 DYIATGHYVIRK-----DINGKSRLLRGLDNQKDQSYFLYTIGYQQMARCFFPLGKLNKL 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A + GL A K DS ICF+ + K D++ R A G I+ ++ + +G H G Sbjct: 177 RVREIAAKQGLVTASKKDSTGICFIGKRKLSDLLSRYI--SAKPGAIITVDNEYIGYHQG 234 Query: 259 IINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 ++ YT+GQR+ LG+ +P +VV D N + +I+ L + + ++ W Sbjct: 235 LMYYTLGQRKKLGIGGTKNGSQDPWYVVDKDINHNLLIIAQGHNHPRLMSNGLIASKLYW 294 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 + + +C VK R Q + ++ ++ + VDF+ V GQ+ VFY Sbjct: 295 VD----RTTLSTPLRCTVKTRYRQSDIGCLIKPIANNQLQVDFDYPVAAVTPGQSAVFYL 350 Query: 370 SDSNEARVLGGGIIS 384 ++ + +GGG I Sbjct: 351 AE----QCIGGGTIE 361 >gi|293604355|ref|ZP_06686762.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Achromobacter piechaudii ATCC 43553] gi|292817232|gb|EFF76306.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Achromobacter piechaudii ATCC 43553] Length = 360 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 122/372 (32%), Positives = 174/372 (46%), Gaps = 28/372 (7%) Query: 26 AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85 MSGGVDSSV A LLK+ GY+V+G+ ++ + S+ C QD+ DA V D + V Sbjct: 2 GMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQDLLDAASVADLVGV 58 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145 ++ +++ V F Y+AG TP P V CN +KF L LGA+ +ATGH Sbjct: 59 EFEFVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGAEHIATGH 118 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y R R + G + + + +D +DQSYFL Q QL FPLGD+ K VR +A Sbjct: 119 YARVREVPAEGGGTQFQLLKALDASKDQSYFLHRLNQAQLSRTLFPLGDIHKTEVRRIAH 178 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 E+GL A K DS ICF+ + + + + R G I+ GQ +GRH G+ YT+G Sbjct: 179 EIGLHNAAKKDSTGICFIGERPFREFLNRYLP--TEPGPILTPEGQQVGRHEGLSFYTLG 236 Query: 266 QR----------RGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 QR R E +V D + + V L ++ ++ +W+ Sbjct: 237 QRKGLGVGGVKGRQREDGTAEAWYVARKDLERNILYVVQGHDHPWLLSSQLQAQDASWVA 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSD 371 A K R Q + + DG + +DFE + V GQ+ V Y D Sbjct: 297 GHPPAIASYG-----AKTRYRQADAACRLDQAADGTFALDFEVPQWAVTPGQSAVLYDGD 351 Query: 372 SNEARVLGGGII 383 LGGGII Sbjct: 352 V----CLGGGII 359 >gi|319637829|ref|ZP_07992595.1| tRNA-specific 2-thiouridylase mnmA [Neisseria mucosa C102] gi|317400984|gb|EFV81639.1| tRNA-specific 2-thiouridylase mnmA [Neisseria mucosa C102] Length = 367 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 117/381 (30%), Positives = 190/381 (49%), Gaps = 24/381 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ + ++V +SGGVDSSV AALLK+ G+ + GV +Q + + C QD Sbjct: 1 MNTHNTPANIIVGLSGGVDSSVTAALLKQQGHQISGVFMQNWEDDDNDE---YCSIKQDS 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DA V D I + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 58 FDAIAVADIIGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + GAD +ATGHY R + G + + +D +DQSYFL+ QL FPLG Sbjct: 118 IEQGADTIATGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERAIFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 +++K VR LA E L A K DS ICF+ + + + +++ G +V G+++ Sbjct: 173 ELEKPEVRRLAEEFKLPTATKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGKVV 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G H G++ YT+GQR+GLG+ GEP FV D + +IV L + + +++ Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTQNELIVVQGHDHPLLYTQSLVMNDLS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 + ++ + K R P ++ +D+ + + F++ + V GQ+ V Y Sbjct: 291 FTLPERPKEG-----RYTCKTRYRMADAPCTLRYLDDETIELVFDEPQWAVTPGQSAVLY 345 Query: 369 TSDSNEARVLGGGIISGSKRS 389 D LGGGII + + Sbjct: 346 DGDV----CLGGGIIMSTDKP 362 >gi|225873266|ref|YP_002754725.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidobacterium capsulatum ATCC 51196] gi|259495822|sp|C1F792|MNMA_ACIC5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|225792803|gb|ACO32893.1| (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidobacterium capsulatum ATCC 51196] Length = 374 Score = 451 bits (1160), Expect = e-124, Method: Composition-based stats. Identities = 155/381 (40%), Positives = 211/381 (55%), Gaps = 28/381 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-------SRKASKRKGSCCAGQD 72 + V VAMSGGVDSS VAA+L+ +GYD+IG+TLQL+N +G CC+ D Sbjct: 4 NNTVAVAMSGGVDSSTVAAMLREEGYDLIGLTLQLWNQRRLAGKDGMPEPVQGRCCSIDD 63 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 VYDARRV +T+ + +Y+ + +ERF + V+ PF S Y G TP+PC CN +KF LL Sbjct: 64 VYDARRVAETLGIPYYLVNEQERFESDVVRPFVSEYLHGRTPIPCSLCNNHLKFDQLLLR 123 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 RQ GAD +ATGHY R+ D + R I+ RP D +DQ++FLF TQ+QL FPL Sbjct: 124 ARQFGADRIATGHYARNEY---DPARGRWILKRPADRSKDQTWFLFGLTQEQLSRTLFPL 180 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-----GDIVH 247 G K VR++A L +A K DSQ+ICF+ G Y + G++V Sbjct: 181 GGYTKPEVREIAATHKLALAAKPDSQEICFIPNGDYKRFIDAYLDEQGESIPDSAGELVS 240 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 G++LGRH GI N+T+GQR+GLGV PL+V+ +D S RV VG L R+ Sbjct: 241 TTGEVLGRHAGIHNFTVGQRKGLGVTAPNPLYVLQIDPASHRVTVGSDTELATETFRARD 300 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDG---VYVDFEKSEVGVASG 362 NW+ + + VKIR +P V+ R DG + F++ + V G Sbjct: 301 CNWISIAD----LTGERRAQVKIRHRHEPAWATVRPVRGADGTAEAEITFDEPQRAVTPG 356 Query: 363 QACVFYTSDSNEARVLGGGII 383 Q+ VFY D V+GGG I Sbjct: 357 QSAVFYDED----EVIGGGWI 373 >gi|313113898|ref|ZP_07799457.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Faecalibacterium cf. prausnitzii KLE1255] gi|310623777|gb|EFQ07173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Faecalibacterium cf. prausnitzii KLE1255] Length = 367 Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 134/378 (35%), Positives = 201/378 (53%), Gaps = 12/378 (3%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAG 70 + R ++AMSGGVDSSV A L+++ GYD G+T++L N +CC+ Sbjct: 1 MTTQTPDSKPRALIAMSGGVDSSVAAWLMQQAGYDCTGITMRLTRNETLGQSGFHTCCSE 60 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 +D+ DA V +++ + V D+ FR +I F Y AG TP PC+DCN+ +KF LL Sbjct: 61 KDIEDAAEVAYAMDIPYEVLDFTADFREQIIEKFVRVYEAGGTPNPCIDCNKYMKFRHLL 120 Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 R G + + TGHY R D+ R ++ + +D +DQSY L+ TQ+QL +R Sbjct: 121 DWARAHGMEYVVTGHYARVE---QDEATGRFLLKKGLDEGKDQSYVLYNLTQEQLAHIRL 177 Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250 PLG + K VR++A + A K DSQDICFV G Y ++ GD + +G Sbjct: 178 PLGGLHKTEVREIAEQHKFVNARKHDSQDICFVPDGDYARFMEDFTGKHYPAGDFLDESG 237 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 +++G HNG + YTIGQR+GLG+AMG P++V D ++ V VGP E L +Y E+NW Sbjct: 238 RVVGPHNGAVRYTIGQRKGLGLAMGAPVYVCGKDMQANTVTVGPEEMLFDRIVYADEVNW 297 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 + + + + R Q V + G ++F++ + GQA V Y Sbjct: 298 IAI----PELTGPLRVTARTRYHQVEQAATVYPAECGFRLEFDQPQRAPTPGQAVVLYQG 353 Query: 371 DSNEARVLGGGIISGSKR 388 D+ VLGGG I+ ++ Sbjct: 354 DT----VLGGGTITRVEK 367 >gi|289208445|ref|YP_003460511.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thioalkalivibrio sp. K90mix] gi|288944076|gb|ADC71775.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thioalkalivibrio sp. K90mix] Length = 373 Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 130/381 (34%), Positives = 189/381 (49%), Gaps = 29/381 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V +SGGVDS+V A+ L GY V G+ ++ + ++ C A D AR V Sbjct: 6 RVIVGLSGGVDSAVAASRLLEAGYRVEGLFMKNWEDDDDAE---YCAAEADFEMAREVAA 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + ++ E +R V F Y AG TP P + CNR +KF L RQLGA + Sbjct: 63 CLEIPLHKANFAEDYRQRVFRHFLHEYEAGRTPNPDILCNREIKFRSFLDHARQLGAQWI 122 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R G +C D +DQ+YFL TQ+QL FPLGD+ K+ VR Sbjct: 123 ATGHYARVRHLPG-----HSELCMAADANKDQTYFLHTLTQEQLRPALFPLGDIPKDQVR 177 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ARE+GL + DS ICF+ + ++ D + + A EG++ GQ++G H G++ Sbjct: 178 ARARELGLPNHARKDSTGICFIGERRFRDFLAQYL--RAPEGEMCTPEGQVVGHHQGLMF 235 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YT+GQR+GLG+ P +VV D S+R+IV L I ++W+ Sbjct: 236 YTLGQRQGLGIGGIDGFPEAPWYVVDKDLGSNRLIVAQDPRHPLLMSPEIETETVHWIH- 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 G ++R Q P ++ D G V V F+ + GQ+ VFY D Sbjct: 295 ----RPPEPGRPVMARLRHRQPLQPCRLESVDGGRVRVRFDAPQRAATPGQSAVFYNGDV 350 Query: 373 NEARVLGGGIISGSKRSDAVE 393 LGG +I ++R+ A E Sbjct: 351 ----CLGGAVI-ATRRTLASE 366 >gi|83319617|ref|YP_424495.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|123535669|sp|Q2SRW8|MNMA_MYCCT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|83283503|gb|ABC01435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 375 Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 123/383 (32%), Positives = 189/383 (49%), Gaps = 23/383 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72 +VVV +SGGVDSSV LL + GY+V G+ ++ ++S + G+ C QD Sbjct: 2 KQKVVVGLSGGVDSSVACYLLLQQGYEVEGLFMRNWDSATNNDILGNTNINDDICPQEQD 61 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DA+ V D +N+ + D+ + + + V F Y TP P + CN+ +KF L+ Sbjct: 62 YLDAKAVADKLNIKLHRVDFIKEYWDYVFSYFIEEYKKARTPNPDILCNKYIKFDKFLNY 121 Query: 133 T-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 QL AD +A GHY + + ++ + + D+ +DQ+YFL Q QL FP Sbjct: 122 AINQLNADYIAMGHYAKVEF---NKTTKQYELIKASDINKDQTYFLSQLNQNQLSKTLFP 178 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NG 250 L ++ KE VR +A E L A+K DS ICF+ + + ++ + GDIV + Sbjct: 179 LANLTKEQVRKIALEQNLITANKKDSTGICFIGERNFTSFLQNYIP--SQTGDIVDIKTN 236 Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLR 306 ++LG+H GI+ YTIGQR+G+ + M EP +V D + + V + L + Sbjct: 237 KVLGKHIGIMYYTIGQRKGINLSGMSEPYYVADKDVKKNILYVCSTSDQSYLYSTSCLVN 296 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQAC 365 +INW+ D V+ F+C K R Q V V++ DD V F+K + GQ Sbjct: 297 DINWILDISKYVDDVNQFECQAKFRYRQLDNKVVVKKIDDNNYKVMFKKPLKAITIGQQA 356 Query: 366 VFYTSDSNEARVLGGGIISGSKR 388 VFY D LGG +I + Sbjct: 357 VFYLDDI----CLGGAVIDKVIK 375 >gi|325679422|ref|ZP_08159007.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ruminococcus albus 8] gi|324109019|gb|EGC03250.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ruminococcus albus 8] Length = 356 Score = 450 bits (1159), Expect = e-124, Method: Composition-based stats. Identities = 148/365 (40%), Positives = 208/365 (56%), Gaps = 13/365 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RV+ AMSGGVDSS LL GY+V G T+ LYN+ R+ +CC+ DV DAR V Sbjct: 3 KKRVLAAMSGGVDSSAAVKLLLDKGYEVAGATMHLYNNEDIGIREKNCCSLNDVEDARLV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + +VF++ + F+ V+ F ++Y +G TP PC++CN+ +KF L LG D Sbjct: 63 ALKLGIDFHVFNFSDEFKMRVMDDFVNTYLSGGTPNPCIECNKHLKFGRFLERAELLGFD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+ S D+ R ++ R D +DQSY L+ TQ QL FP+GDM K Sbjct: 123 YIATGHYVTSHY---DEASGRWLLKRSADRAKDQSYVLYGMTQHQLAHTIFPVGDMNKTD 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R LA E GL A K DSQDICF+ G Y + AG GDIV +G +LG+H G+ Sbjct: 180 IRALAEENGLINAHKRDSQDICFIPDGDYAKFITE-AAGEQPAGDIVLSDGTVLGKHRGL 238 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 I+YT+GQRRG+GV+ EPLFV D +++I+G E L + E+N++ D Sbjct: 239 IHYTVGQRRGVGVSYSEPLFVTSKDMAQNKLIMGTAEQLCSKTLTAGEVNFITV----DK 294 Query: 320 VVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + KC + R Q VP V Q +++ V V+F+K ++ GQA VFY + V+ Sbjct: 295 LTSPLKCTAQTRYHQQDVPCTVFQIDENTVKVEFDKPHKAISKGQAVVFYDGE----YVV 350 Query: 379 GGGII 383 GGG I Sbjct: 351 GGGKI 355 >gi|89054998|ref|YP_510449.1| tRNA-specific 2-thiouridylase MnmA [Jannaschia sp. CCS1] gi|122498420|sp|Q28PD8|MNMA_JANSC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|88864547|gb|ABD55424.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Jannaschia sp. CCS1] Length = 380 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 191/386 (49%), Positives = 253/386 (65%), Gaps = 12/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + + LNSL K P D RVVVAMSGGVDSS VAA L +GYDV+GVTLQLY+ A Sbjct: 1 MALDRSDGLNSLGFAKAPADTRVVVAMSGGVDSSAVAAQLADEGYDVVGVTLQLYDHGAA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG+D++DA RV +T+ HYV DYE F++AVI FA SY AG TP+PC+ C Sbjct: 61 LAKKGACCAGRDIHDAARVAETMGFPHYVLDYENVFKDAVIDEFADSYLAGATPVPCIRC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL + L AD +ATGHYI+ ++ G+ + + D RDQSYFLF+T Sbjct: 121 NERVKFKDLLETAKDLDADCMATGHYIQRKM-----GREKAELHSAADAARDQSYFLFST 175 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 Q+QL LRFPLG ++ K R LA + GL +ADK DSQDICFV G Y V++++ G Sbjct: 176 KQEQLDFLRFPLGHLESKAETRALAAKYGLSVADKPDSQDICFVPNGNYAAVIEKLRPGA 235 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IV ++G +L H G+I+YTIGQRRGLG+ + +PL+VV LD ++ RVIVGP+E L Sbjct: 236 ADPGEIVDIDGNVLAMHRGVIHYTIGQRRGLGIGGLDDPLYVVKLDPDTRRVIVGPKEML 295 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 + +REINWLGD F+ ++ VKIRS++ P ++ + V+ +E Sbjct: 296 STRTVPVREINWLGDTPFDSQ--QEWQMDVKIRSTRPPRGAVIRPVSATEAEVELIVAEE 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 GV+ GQACVFY + R+ GGG I Sbjct: 354 GVSPGQACVFYAPE--GGRIFGGGWI 377 >gi|291556233|emb|CBL33350.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium siraeum V10Sc8a] Length = 358 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 145/368 (39%), Positives = 204/368 (55%), Gaps = 19/368 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++ +AMSGGVDSSV LLK YDV G TL+L++SR + G C + D+ DA+ + Sbjct: 3 KLAIAMSGGVDSSVALVLLKDK-YDVSGYTLKLHDSR-GTDDSGLCGSASDIEDAKAIAA 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 V HY+ D E F V F SY +G TP PCV+CN T+KF LL ++ G + + Sbjct: 61 KFGVPHYLLDMRELFSKTVQKSFTESYLSGRTPNPCVECNETIKFGALLDAVKKQGINHI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDL-----ERDQSYFLFATTQQQLCDLRFPLGDMK 196 ATGHY+RS D+ R ++ + ++ +DQSY L+ +QQQL FPLG+M Sbjct: 121 ATGHYVRSCY---DEKSGRWLLKKAINADGTSNAKDQSYVLYRLSQQQLAASVFPLGEMT 177 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ +R +A + GL +DK DSQDICFV G Y ++R +GD + NG ++GRH Sbjct: 178 KDEIRHIAADSGLINSDKPDSQDICFVPDGDYAGFIERYTGNTYPDGDFLDENGNVIGRH 237 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G+I YTIGQRRG+G G+P++V+ + +++ V +G E L +Y +NW+ Sbjct: 238 KGVIFYTIGQRRGIGTGFGKPMYVIGKNADNNTVTLGSNELLFTDTLYADNLNWIAFEYP 297 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 E FKC K R Q P V + V V F++ V GQ VFY D Sbjct: 298 ES----EFKCKAKTRYRQTEQPCTVYPQGRNTVRVVFDEKIRAVTPGQHVVFYDGDI--- 350 Query: 376 RVLGGGII 383 VLGGG+I Sbjct: 351 -VLGGGVI 357 >gi|294668754|ref|ZP_06733847.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309271|gb|EFE50514.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 367 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 120/381 (31%), Positives = 188/381 (49%), Gaps = 24/381 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ + ++V +SGGVDSSV AALLK+ GY V G+ +Q + + C QD Sbjct: 1 MNIDHTQQNIIVGLSGGVDSSVTAALLKQQGYQVRGIFMQNWEDDDNDE---YCSIKQDS 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DA V D I + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 58 FDAIAVADIIGIDIDIVNFAAQYKDNVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + GAD +ATGHY R + G + + +D +DQSYFL+ QL FPLG Sbjct: 118 IEQGADTIATGHYARKEVRNG-----MHYLLKGLDQNKDQSYFLYRLKPFQLERAIFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 D++K VR LA E L A K DS ICF+ + + + +++ G +V G+ + Sbjct: 173 DLEKPEVRRLAFEFNLPTAAKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGKTV 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G H G++ YT+GQR+GLG+ GEP FV D + +IV L + + +++ Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 + + + K R P ++ +D+ V + F++ + V GQ+ V Y Sbjct: 291 FTLPERPREG-----RYTCKTRYRMADAPCELRYLDDETVELVFDEPQWAVTPGQSAVLY 345 Query: 369 TSDSNEARVLGGGIISGSKRS 389 D LGGGII + + Sbjct: 346 DGDV----CLGGGIIMSTDKP 362 >gi|121596352|ref|YP_988248.1| tRNA-specific 2-thiouridylase MnmA [Acidovorax sp. JS42] gi|205811052|sp|A1WD47|MNMA_ACISJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|120608432|gb|ABM44172.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidovorax sp. JS42] Length = 379 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 122/392 (31%), Positives = 183/392 (46%), Gaps = 42/392 (10%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K RVVV +SGGVDS+V A LLK+ G++V+G+ ++ + S+ C + QD DA Sbjct: 2 KKHRVVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSEF---CSSRQDFLDAAS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + ++ +++ V F Y AG TP P V CN +KF L +LGA Sbjct: 59 VADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R R + + + +D +DQSYFL Q QL FP+G++ K Sbjct: 119 EKIATGHYARVR---QNPATGLFELLKGLDPSKDQSYFLHRLNQAQLSKTLFPVGELHKT 175 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A ++GL A K DS ICF+ + + + + R G I+ G+ LGRH G Sbjct: 176 EVRRIAADIGLPNAKKKDSTGICFIGERPFREFLNRYIQHA--PGPILDDRGRKLGRHVG 233 Query: 259 IINYTIGQRRGLGVAM---------------------GEPLFVVYLDKNSS--RVIVGP- 294 + YT+GQR+GLG+ P FV + ++ RV+ G Sbjct: 234 LSFYTLGQRQGLGIGGVKEKGAGAKAPSGQPVRGAGDHAPWFVARKELETNTLRVVQGHE 293 Query: 295 RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFE 353 L HR+ ++ +W+ C K R Q V D + F Sbjct: 294 HPWLLSHRLDAQDASWIAGHPPAAGA-----CAAKTRYRQQDAACTVLAAQGDAFNLQFP 348 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIISG 385 +++ V GQ+ V Y + LGGG+I+ Sbjct: 349 EAQWAVTPGQSAVLYDGEV----CLGGGVIAA 376 >gi|194365696|ref|YP_002028306.1| tRNA-specific 2-thiouridylase MnmA [Stenotrophomonas maltophilia R551-3] gi|229487423|sp|B4SIN4|MNMA_STRM5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|194348500|gb|ACF51623.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Stenotrophomonas maltophilia R551-3] Length = 380 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 129/393 (32%), Positives = 185/393 (47%), Gaps = 32/393 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V +SGGVDSSV A L + G V G+ +Q + A G C A D DA VC Sbjct: 5 RVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNW----ADDGSGECRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + V F + YAAG TP P V CNR VKF L R+LGA+ + Sbjct: 61 LLGIPFHFRDFSNEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + ++ R D +DQSYFL QQQL FP+GD++K +R Sbjct: 121 ATGHYARVAQR-----GHQWLLLRGADRSKDQSYFLHQLGQQQLAATLFPIGDLEKTDLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGII 260 +AR++ L K DS ICF+ + + + + R A G I+ +G ++ H G+ Sbjct: 176 RIARDVSLPTHAKKDSTGICFIGERDFREFLGRYLP--AKPGQILDPADGSVIAEHPGVF 233 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLG 312 +T+GQR GL + P +VV D S+ + V + +R+ +W+ Sbjct: 234 YFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSTWMLSNRLRSETAHWIA 293 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 F+C + R Q P V+ DDG V V F + + V GQ+ V Y D Sbjct: 294 GA----PPARRFECTAQTRYRQPDEPCTVEVLDDGSVLVTFARPQRAVTPGQSLVLYDGD 349 Query: 372 SNEARVLGGGIISGSKRSDAVEESLLSVIGDEF 404 LGG +I+ + DA E L F Sbjct: 350 V----CLGGAVIAAT---DAPLEQRLRTTPSPF 375 >gi|190574280|ref|YP_001972125.1| tRNA-specific 2-thiouridylase MnmA [Stenotrophomonas maltophilia K279a] gi|205828975|sp|B2FQX2|MNMA_STRMK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|190012202|emb|CAQ45825.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Stenotrophomonas maltophilia K279a] Length = 380 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 129/393 (32%), Positives = 185/393 (47%), Gaps = 32/393 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V +SGGVDSSV A L + G V G+ +Q + A G C A D DA VC Sbjct: 5 RVMVGVSGGVDSSVAAWRLVQQGEAVAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + V F + YAAG TP P V CNR VKF L R+LGA+ + Sbjct: 61 LLGIPFHFRDFSSEYWQGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + ++ R D +DQSYFL Q+QL FP+GD++K +R Sbjct: 121 ATGHYARVTQR-----GHQWLLLRGADRSKDQSYFLHQLGQEQLAATLFPIGDLEKTDLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGII 260 +AR++ L K DS ICF+ + + + + R A G I+ +G ++ H G+ Sbjct: 176 RIARDVSLPTHAKKDSTGICFIGERDFREFLGRYLP--AKPGQILDPADGSVIAEHPGVF 233 Query: 261 NYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLG 312 +T+GQR GL + P +VV D S+ + V + + R+ +W+ Sbjct: 234 YFTLGQREGLNIGGVRGRPAAPWYVVGKDVASNVLYVDQDRDSKWMLSERLRSETAHWIA 293 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 F+C + R Q P VQ DDG V V F + + V GQ+ V Y D Sbjct: 294 GS----PPARRFECTAQTRYRQPDEPCTVQVLDDGSVLVTFARPQRAVTPGQSLVLYDGD 349 Query: 372 SNEARVLGGGIISGSKRSDAVEESLLSVIGDEF 404 LGG +I+ + DA E L F Sbjct: 350 V----CLGGAVIAAT---DAPLEQRLRTTPSPF 375 >gi|291542284|emb|CBL15394.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ruminococcus bromii L2-63] Length = 357 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 138/364 (37%), Positives = 208/364 (57%), Gaps = 13/364 (3%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK-ASKRKGSCCAGQDVYDARRVC 80 + ++AMSGGVDSSV A L K GYD G+TL+L+++ KR+ +CC+ D+ DARRVC Sbjct: 4 KALIAMSGGVDSSVAAFLTKDMGYDATGITLKLFDNEDIGEKREKTCCSLDDIDDARRVC 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + +YV+++++ F+ VI F +Y G TP PC+DCNR +KF L+ +L D Sbjct: 64 LKLGIPYYVYNFKDSFKENVIDRFIRAYENGTTPNPCIDCNRFIKFEKLIRRAEELDFDC 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 + TGHY G D R ++ + +D +DQSY L+ TQ+QL PLG KE V Sbjct: 124 VVTGHYSTIEYDKGAD---RYLLKKSVDSTKDQSYVLYCLTQRQLAKTLLPLGTYTKEKV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A E+GL A K DSQDICFV G Y +++ G+ V G ILG H GII Sbjct: 181 REIANELGLINARKHDSQDICFVPDGDYAKFIEQYTGRTYPNGNFVDTKGHILGEHKGII 240 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YT+GQR+GLG+A+ P++V + +++ VI+ L +Y +IN + D + Sbjct: 241 RYTVGQRKGLGLALPHPMYVKEKNLDTNEVILCDNNELFSKELYATDINLITC----DKI 296 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 K ++R SQ V++ DD +++ F++ + ++ GQA V Y + V+G Sbjct: 297 DKPIKVKARVRYSQPEKDAIVEQIDDNTLHIVFDEPQRAISKGQAAVLYDGE----YVVG 352 Query: 380 GGII 383 GG I Sbjct: 353 GGTI 356 >gi|167749316|ref|ZP_02421443.1| hypothetical protein EUBSIR_00268 [Eubacterium siraeum DSM 15702] gi|167657707|gb|EDS01837.1| hypothetical protein EUBSIR_00268 [Eubacterium siraeum DSM 15702] Length = 387 Score = 449 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 143/368 (38%), Positives = 205/368 (55%), Gaps = 19/368 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++ +AMSGGVDSSV LLK Y+V G TL+L++SR + G C + D+ DA+ + Sbjct: 32 KLAIAMSGGVDSSVALVLLKDK-YEVSGYTLKLHDSR-GTDDSGLCGSASDIEDAKAIAA 89 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 V HY+ D + F + V F SY +G TP PCV+CN T+KF LL ++ G + + Sbjct: 90 KFGVPHYLLDMRDLFSDTVQKSFVQSYLSGRTPNPCVECNETIKFGALLDAVKKQGINHI 149 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDL-----ERDQSYFLFATTQQQLCDLRFPLGDMK 196 ATGHY+RS D+ R ++ + ++ +DQSY L+ +QQQL FPLG+M Sbjct: 150 ATGHYVRSCY---DEKSGRWLLKKAINADGTSNAKDQSYVLYRLSQQQLAASVFPLGEMT 206 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ +R +A + GL +DK DSQDICFV G Y ++R +GD + NG ++GRH Sbjct: 207 KDEIRHIAADSGLINSDKPDSQDICFVPDGDYAGFIERYTGNTYPDGDFLDENGNVIGRH 266 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G+I YTIGQRRG+G G+P++V+ + +++ V +G E L +Y +NW+ Sbjct: 267 KGVIFYTIGQRRGIGTGFGKPMYVIGKNADNNTVTLGSNELLFTDTLYADNLNWIAFEYP 326 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 E FKC K R Q P V + V V F++ V GQ VFY D Sbjct: 327 ES----EFKCRAKTRYRQTEQPCTVYPQGRNTVRVVFDEKIRAVTPGQHVVFYDGDI--- 379 Query: 376 RVLGGGII 383 VLGGG+I Sbjct: 380 -VLGGGVI 386 >gi|302871531|ref|YP_003840167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor obsidiansis OB47] gi|302574390|gb|ADL42181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor obsidiansis OB47] Length = 360 Score = 449 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 135/370 (36%), Positives = 204/370 (55%), Gaps = 15/370 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDAR 77 +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ + + R+ SCC+ V DAR Sbjct: 2 KKKVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETEDELIREKSCCSLTAVDDAR 61 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV +++ +YVF+ +E F+ VI F Y G TP PC+ CNR +KF L LG Sbjct: 62 RVAHILDIPYYVFNMKEDFKKEVINYFIDEYIKGRTPNPCIMCNRKIKFELFLKRAMVLG 121 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D +ATGHY + D+ R ++ R E+DQ+Y L+ TQ+ L FPLG K Sbjct: 122 MDYIATGHYA---IIEYDNTLCRYLLKRSKAREKDQTYVLYNMTQEMLSKTIFPLGRFSK 178 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + VR LA + L +A K DSQ+ICF+ Y +++ GI EG V G ILG+ Sbjct: 179 DEVRKLAEKFKLPVAKKPDSQEICFIPDNDYGSFIEKET-GINDEGVYVDTEGNILGKSK 237 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 NYTIGQR+GLG++ G+ ++VV + ++V++G + + + ++N++ Sbjct: 238 AYYNYTIGQRKGLGISTGKRMYVVDIKPEENKVVLGEEDKVFSDGLIASDLNFI----LF 293 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 D + + KIR + V ++ V V F + + + GQ+ VFY+ D Sbjct: 294 DKLESELEVTAKIRYTAKETKTKVIPVQNNKVLVKFYEKQRAITPGQSVVFYSGDI---- 349 Query: 377 VLGGGIISGS 386 V+GGGII + Sbjct: 350 VVGGGIIEKA 359 >gi|117924260|ref|YP_864877.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Magnetococcus sp. MC-1] gi|205816907|sp|A0L678|MNMA_MAGSM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|117608016|gb|ABK43471.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Magnetococcus sp. MC-1] Length = 358 Score = 449 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 161/367 (43%), Positives = 214/367 (58%), Gaps = 14/367 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAGQDVYDAR 77 + RV VAMSGGVDSS AALL GY+VIG+T+QL++ SCCA D+YDAR Sbjct: 3 QPQRVAVAMSGGVDSSATAALLVEQGYEVIGLTMQLWDHSSPKVAGSRSCCALDDLYDAR 62 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 +V T+ + +YV +YE FR AV+ F +YAAG+TP PCV CN+ +KF LL LG Sbjct: 63 QVAQTLGIPYYVVNYEADFRQAVVDDFIQTYAAGQTPNPCVRCNQILKFDLLLKKALALG 122 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD LATGHY R +D + + + D +DQSYFLF TT QL +RFPLG+M K Sbjct: 123 ADFLATGHYAIRR----EDAQGVPQLWQGSDPAKDQSYFLFTTTMAQLAHVRFPLGEMDK 178 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + R LA+ GL ++ K +SQD+CFV G Y + + G IV G LG+H Sbjct: 179 QQTRQLAQRFGLHLSTKQESQDVCFVPDGDYSAFFAKQAPHLLTPGAIVDQQGHSLGQHK 238 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 G+ YT+GQR+GLG+A PL+V+ LD ++VIVGP E+L ++ L +NWL Sbjct: 239 GLGCYTVGQRKGLGIAHPTPLYVLALDAPHNQVIVGPAEALYQQQLTLHHVNWL----EP 294 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + F KIR + PV V+ D G + F + + + GQACVFY AR Sbjct: 295 TPPTEPFASMAKIRYAAPPVEARVEPLPDGGAQIYFNQPQRAITPGQACVFYDG----AR 350 Query: 377 VLGGGII 383 V+GGG I Sbjct: 351 VVGGGWI 357 >gi|218768524|ref|YP_002343036.1| tRNA-specific 2-thiouridylase MnmA [Neisseria meningitidis Z2491] gi|11277501|pir||H81798 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) NMA1744 [imported] - Neisseria meningitidis (strain Z2491 serogroup A) gi|121052532|emb|CAM08872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis Z2491] Length = 383 Score = 449 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 117/383 (30%), Positives = 182/383 (47%), Gaps = 24/383 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + C Q Sbjct: 15 LRMNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 71 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 72 DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLD 131 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 132 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERAIFP 186 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 187 LGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGK 244 Query: 252 ILGRHNGIINYTIGQRR-GLGVAMGEPLFVVYLDKNSSR--VIVGP-RESLEVHRIYLRE 307 +G H G++ YT+GQR+ GEP FV D + V+ G L + + + Sbjct: 245 TVGEHVGLMFYTLGQRKGLGIGGGGEPWFVAAKDLTKNELMVVQGHDHPLLYTRSLVMND 304 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366 +++ ++ K R P ++ +D+ V + F++ + V GQ+ V Sbjct: 305 LSFTLPERPKEG-----HYTCKTRYRMADAPCELRYLDDETVELVFDEPQWAVTPGQSAV 359 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 Y D LGGGII + + Sbjct: 360 LYDGDI----CLGGGIIQSTDKP 378 >gi|33593833|ref|NP_881477.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bordetella pertussis Tohama I] gi|33600935|ref|NP_888495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bordetella bronchiseptica RB50] gi|81423057|sp|Q7U359|MNMA_BORPE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|81423064|sp|Q7U387|MNMA_BORBR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|33563906|emb|CAE43165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bordetella pertussis Tohama I] gi|33568535|emb|CAE32447.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bordetella bronchiseptica RB50] Length = 371 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 122/385 (31%), Positives = 180/385 (46%), Gaps = 30/385 (7%) Query: 14 LDKNP-KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72 + NP + RVVV MSGGVDSSV A LLK+ GY+V+G+ ++ + S+ C QD Sbjct: 1 MPSNPTRKGRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQD 57 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 + DA V D + V ++ +++ V F Y+AG TP P V CN +KF L Sbjct: 58 LLDAASVADLVGVEFEYVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDH 117 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 LGA+ +ATGHY R R G R + + +D +DQSYFL Q QL FPL Sbjct: 118 AMALGAEHIATGHYARVRTVETPAGP-RHQLLKALDDTKDQSYFLHRLNQVQLARTLFPL 176 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR +A E+GL A K DS ICF+ + + + + R + G I+ GQ Sbjct: 177 GELRKTEVRRIAHEIGLHNAAKKDSTGICFIGERPFREFLNRYLP--SEPGPILTPEGQR 234 Query: 253 LGRHNGIINYTIGQR----------RGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLE 299 +G H+G+ YT+GQR R E + D + + V L Sbjct: 235 VGTHHGLSFYTLGQRKGLGVGGVKGRQRDDGTAEAWYAARKDLARNVLYVVQGHDHPWLL 294 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVG 358 ++ ++ +W+ K R Q + Q + + FE+++ Sbjct: 295 SAQLQAQDASWIAGEPPAAGAYG-----AKTRYRQADAACRLDQAGGERFALAFEQAQWA 349 Query: 359 VASGQACVFYTSDSNEARVLGGGII 383 V GQ+ V Y + LGGGII Sbjct: 350 VTPGQSAVLYDGEV----CLGGGII 370 >gi|146328716|ref|YP_001209536.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Dichelobacter nodosus VCS1703A] gi|205816915|sp|A5EVB4|MNMA_DICNV RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|146232186|gb|ABQ13164.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Dichelobacter nodosus VCS1703A] Length = 376 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 131/378 (34%), Positives = 199/378 (52%), Gaps = 26/378 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 + P+ + V MSGGVDSSV A LLK+ GYDV G+ ++ + + G C A +D+ D Sbjct: 7 QAPQGSTIAVGMSGGVDSSVTAYLLKKQGYDVFGIFMKNWEE---TFSSGYCSAAEDLED 63 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 AR VC T+++ + ++ +++ + V F Y AG TP P V CNR +KF++L +Q Sbjct: 64 ARDVCQTLDIPLHTVNFVQQYHDRVFQLFLDEYRAGRTPNPDVLCNREIKFAELALYAQQ 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD LATGHY + + + +D ++DQSYFL T QL FPLG + Sbjct: 124 LGADFLATGHYAQRLQSD----NHEAALFKGVDAQKDQSYFLHQITPAQLNKAIFPLGGL 179 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K+ VR +ARE GL DK DS ICF+ + + +++ A +G + NG+I+G Sbjct: 180 QKKQVRAIARERGLTTFDKKDSTGICFIGERPFRAFLQQYLP--AQKGLMKTPNGEIVGE 237 Query: 256 HNGIINYTIGQRR-----GLGVAMGEPLFVVYLDKNSSRVIVGP--RESLEVHRIYLREI 308 H G++ YTIGQR+ G+ A EP +V+ D +++ +IVG L + ++ Sbjct: 238 HMGLMYYTIGQRQGLGIGGIAGASEEPWYVLEKDLSNNVLIVGQGDHPLLYHRVLIAGQL 297 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVF 367 +WL +A + G K R Q V DG + + FE+ + + GQ V Sbjct: 298 SWLN-----EAPIAGRFYHAKTRYRQSDQKCRVDYAADGRLQLTFEQLQRAITLGQYAVI 352 Query: 368 YTSDSNEARVLGGGIISG 385 Y + R LGGG+I Sbjct: 353 YDGE----RCLGGGVIEA 366 >gi|291547860|emb|CBL20968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ruminococcus sp. SR1/5] Length = 362 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 135/371 (36%), Positives = 205/371 (55%), Gaps = 13/371 (3%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK-ASKRKGSCCAGQDVYDARRV 79 +V++AMSGGVDSSV A L K G + IG T++LYN+ R+ +CC+ DV DAR V Sbjct: 2 KKVIIAMSGGVDSSVAALLTKESGDECIGATMKLYNNEDIGVHREKTCCSLDDVEDARSV 61 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +++ +YVF++ F V+ F +Y G TP PC+DCNR +KF + +++G D Sbjct: 62 AYQMDMPYYVFNFTADFHTEVMDRFVDAYENGCTPNPCIDCNRYLKFDKMFHRMQEIGYD 121 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 + TGHY R D+ + R ++ + +D +DQSY L+ TQ+QL ++ PLG ++K+ Sbjct: 122 YIVTGHYARVEY---DEKRDRYLLKKAVDDTKDQSYVLYMLTQEQLAHVKLPLGGLRKDQ 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A + G A K DSQDICFV G Y +++ EGD V G +GRH GI Sbjct: 179 VRVIAEKHGFINARKHDSQDICFVPDGDYAKFIEKYTGKKTPEGDFVDKEGNYIGRHKGI 238 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 I+YTIGQRRGLG+ L+V + ++ V++G E L + +N + D+ Sbjct: 239 IHYTIGQRRGLGIPAASRLYVCEISPKTNTVVLGDNEDLFSSELEADNVNLISV----DS 294 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + + KIR P + DG+ +V F++ + + GQA V Y D V+ Sbjct: 295 LTEPKRVTAKIRYRHKEQPATAWQTPDGILHVKFDEPQRAITKGQAVVMYDGD----EVV 350 Query: 379 GGGIISGSKRS 389 GGG+I+ Sbjct: 351 GGGVINKIYSQ 361 >gi|309378502|emb|CBX22855.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 383 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 116/383 (30%), Positives = 181/383 (47%), Gaps = 24/383 (6%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + C Q Sbjct: 15 LRMNTTSNPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQ 71 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 72 DSFDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLD 131 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GAD +ATGHY R + G + + +D +DQSYFL+ QL FP Sbjct: 132 YAVGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFP 186 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ Sbjct: 187 LGGLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLP--TNNGKMVTPEGK 244 Query: 252 ILGRHNGIINYTIGQRR-GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 +G H G++ YT+GQR+ GEP FV D + +IV L + + + Sbjct: 245 TVGEHVGLMFYTLGQRKGLGIGGGGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMND 304 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366 +++ ++ K R P ++ +D+ + F++ + V GQ+ V Sbjct: 305 LSFTLPERPKEG-----HYTCKTRYRMADAPCELRYLDDETAELVFDEPQWAVTPGQSAV 359 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 Y D LGGGII + + Sbjct: 360 LYDGDI----CLGGGIIQTTDKP 378 >gi|170758983|ref|YP_001788227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A3 str. Loch Maree] gi|205810606|sp|B1KZJ2|MNMA2_CLOBM RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|169405972|gb|ACA54383.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum A3 str. Loch Maree] Length = 353 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 122/363 (33%), Positives = 204/363 (56%), Gaps = 19/363 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V +AMSGGVDSSV A +LK GY+VIG+ + L+ + C DARRV + Sbjct: 6 VALAMSGGVDSSVSAYILKERGYEVIGIYMDLWRDEREE-----YCNKSAAEDARRVAEK 60 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 +++ ++ + + F+ VI F Y +G TP PCV CN+T+KF + ++ GAD +A Sbjct: 61 LDIPFHIINIGKEFKANVIDYFIDEYLSGRTPNPCVACNKTIKFEAFFNAAKEFGADFMA 120 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ RR+++ + D ++DQ+Y ++ Q QL P G+ +KE +R+ Sbjct: 121 TGHYCKI-----EERNRRKVIVKAEDDKKDQTYMMYNLKQYQLERTIMPCGEYRKEHIRE 175 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A +GLD+ +K DSQ+ICF+ + +KR EG+ V G+I+G+H GII Y Sbjct: 176 IAENIGLDVYNKKDSQEICFIPDNDHGGFIKRNYKSKVSEGNFVDKAGKIIGKHKGIIYY 235 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A+G+P +V+ ++ ++ V++G E + + +++N++ D + Sbjct: 236 TIGQRKGLGIALGKPAYVIDINPITNEVVIGDEEDIFHTELIAKDVNFI----PFDKLEK 291 Query: 323 GFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + K+R S P + ++ V V F+ + + GQ+ V Y D ++GGG Sbjct: 292 SMELEAKVRYSAKPSKATIIPLGNNKVKVVFQNKQRAITKGQSVVLYDKD----MLVGGG 347 Query: 382 IIS 384 II Sbjct: 348 IIE 350 >gi|167042070|gb|ABZ06805.1| putative tRNA methyl transferase [uncultured marine microorganism HF4000_141I21] Length = 382 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 183/385 (47%), Positives = 257/385 (66%), Gaps = 10/385 (2%) Query: 5 EATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64 ++ + NSL K PKD +VVVAMSGGVDSS VA L+K+DGYDVIG+TL+LY+ K+SK Sbjct: 4 KSEKFNSLGFLKRPKDTKVVVAMSGGVDSSTVAGLMKKDGYDVIGITLKLYDDAKSSKES 63 Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 CCAGQD+ DA+RV +N+ H + Y+++F+ VI F SY AGETP+PCV CN+TV Sbjct: 64 RQCCAGQDILDAKRVSQQLNIDHKILYYQKKFKKDVIDSFIDSYVAGETPIPCVQCNQTV 123 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 KF DL S ++ AD L TGHY+ G+ M R +DL RDQSYFLF+TTQ+Q Sbjct: 124 KFRDLYSYALEMKADALITGHYVNRIKKNGN-----AEMYRAIDLTRDQSYFLFSTTQEQ 178 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 L LRFPLG M+K+ R +A ++ L++ADK DSQDICFV G Y ++K+ +G+ Sbjct: 179 LNFLRFPLGQMQKKETRKIASKLKLNVADKPDSQDICFVPNGNYASIIKKYRPESFQKGN 238 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 I+ + G I+G+H+GIIN+TIGQR+G+G+A EPL+V+ ++ ++ VIVG R +L + +IY Sbjct: 239 ILDIVGNIVGKHDGIINFTIGQRKGIGIAYKEPLYVININAKTNEVIVGNRVALAIKKIY 298 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 L+ +N L D + F+K+RS+ V V ND G V+ E+ E G++ GQA Sbjct: 299 LKNLNLLSDAEEYNN-----NLFIKVRSTGRLVKAKVNLNDTGAEVNLEELETGISPGQA 353 Query: 365 CVFYTSDSNEARVLGGGIISGSKRS 389 CVFY+ + +VLGGG I ++ + Sbjct: 354 CVFYSKNQFGDKVLGGGWIVKTENN 378 >gi|33597091|ref|NP_884734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bordetella parapertussis 12822] gi|81423061|sp|Q7U375|MNMA_BORPA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|33566542|emb|CAE37798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bordetella parapertussis] Length = 371 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 122/385 (31%), Positives = 180/385 (46%), Gaps = 30/385 (7%) Query: 14 LDKNP-KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72 + NP + RVVV MSGGVDSSV A LLK+ GY+V+G+ ++ + S+ C QD Sbjct: 1 MPSNPTRKGRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSE---YCSTRQD 57 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 + DA V D + V ++ +++ V F Y+AG TP P V CN +KF L Sbjct: 58 LLDAASVADLVGVEFEYVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDH 117 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 LGA+ +ATGHY R R G R + + +D +DQSYFL Q QL FPL Sbjct: 118 AMALGAEHIATGHYARVRTVETPAGP-RHQLLKALDDTKDQSYFLHRLNQAQLARTLFPL 176 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G+++K VR +A E+GL A K DS ICF+ + + + + R + G I+ GQ Sbjct: 177 GELRKTEVRRIAHEIGLHNAAKKDSTGICFIGERPFREFLNRYLP--SEPGPILTPEGQR 234 Query: 253 LGRHNGIINYTIGQR----------RGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLE 299 +G H+G+ YT+GQR R E + D + + V L Sbjct: 235 VGTHHGLSFYTLGQRKGLGVGGVKGRQRDDGTAEAWYAARKDLARNVLYVVQGHDHPWLL 294 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVG 358 ++ ++ +W+ K R Q + Q + + FE+++ Sbjct: 295 SAQLQAQDASWIAGEPPAAGAYG-----AKTRYRQVDAACRLDQAGGERFALAFEQAQWA 349 Query: 359 VASGQACVFYTSDSNEARVLGGGII 383 V GQ+ V Y + LGGGII Sbjct: 350 VTPGQSAVLYDGEV----CLGGGII 370 >gi|283781959|ref|YP_003372714.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Pirellula staleyi DSM 6068] gi|283440412|gb|ADB18854.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Pirellula staleyi DSM 6068] Length = 373 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 157/381 (41%), Positives = 213/381 (55%), Gaps = 28/381 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS-----------------RKASKRK 64 R+V+AMSGGVDSSV AA+L R G++VIGV ++ ++ S K Sbjct: 3 RIVLAMSGGVDSSVAAAILTRAGHEVIGVFMRHGEEAQAACAVDAPGFQLPIFKERSDHK 62 Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 CC+ D DARRV D +++ Y + + FR +I F Y G TP PCV CN + Sbjct: 63 QGCCSASDAEDARRVADRLDIPFYALNLQSEFR-QIIDYFIDEYTVGRTPNPCVQCNNWL 121 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 KF L +GA+ +ATGHY R GD +CR +D +DQSY LF ++ Sbjct: 122 KFGKLFDYADSVGAEFVATGHYARLAQIDGD-----LALCRGVDDGKDQSYVLFGIKKEL 176 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 L + P+GD K +R LA E+GL +ADK DSQ+ICFV GK+ + V+ I G+ Sbjct: 177 LPRMLLPIGDYYKPQIRKLAHEIGLRVADKRDSQEICFVTSGKHDEFVRARRPDIDTRGE 236 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 IV + G++LG+H GI +TIGQRRGLGVA+GE FVV ++ ++ RV+VG R+ L + Sbjct: 237 IVTMEGKVLGQHAGIERFTIGQRRGLGVALGERAFVVRIEPDTHRVVVGTRDDLARTALT 296 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQ 363 NW A+ + F+C KIR + DP P V+ DD + VDF++ GVA GQ Sbjct: 297 AANCNWHTTKSPVGAIGEPFRCEAKIRYNSDPAPATAVRLTDDRLQVDFDEPRHGVAPGQ 356 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 A V Y D RVLGGG I Sbjct: 357 AVVVYDGD----RVLGGGWIE 373 >gi|331703443|ref|YP_004400130.1| tRNA(5 methylaminomethyl 2 thiouridylate) methyltransferase [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801998|emb|CBW54152.1| tRNA(5 methylaminomethyl 2 thiouridylate) methyltransferase [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 384 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 126/383 (32%), Positives = 191/383 (49%), Gaps = 23/383 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72 +VVV +SGGVDSSV LL + GY+V G+ ++ ++S + G+ C QD Sbjct: 11 KQKVVVGLSGGVDSSVACYLLLQQGYEVEGLFMRNWDSATNNDILGNTNINNDICPQEQD 70 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DA+ V D +N+ + D+ + + + V F Y TP P + CN+ +KF L+ Sbjct: 71 FLDAKAVADKLNIKLHRVDFIKEYWDYVFSYFIEEYKKARTPNPDILCNKYIKFDKFLNY 130 Query: 133 T-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 QL AD +A GHY + + ++ + + D +DQ+YFL Q QL FP Sbjct: 131 AINQLNADYIAMGHYAKVEF---NKTTKQYELIKASDTNKDQTYFLSQLNQNQLSKTLFP 187 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NG 250 L ++ KE VR +A E L A+K DS ICF+ + + D ++ + GDIV + Sbjct: 188 LANLTKEQVRKIALEQNLITANKKDSTGICFIGERHFTDFLQNYIP--SQTGDIVDIKTN 245 Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLR 306 ++LG+H GI+ YTIGQR+G+ + M EP +V D + V + L ++ Sbjct: 246 KVLGKHIGIMYYTIGQRKGIHLSGMSEPYYVADKDVEKKILYVCSTSDQSYLYSTSCFVN 305 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQAC 365 +INW+ D + V+ FKC K R Q+ V V++ DD V FEK + GQ Sbjct: 306 DINWILDLSKYVSDVNEFKCQAKFRYRQNDNNVVVKKIDDNNYQVIFEKPLKAITIGQQA 365 Query: 366 VFYTSDSNEARVLGGGIISGSKR 388 VFY D LGG +I + Sbjct: 366 VFYLDDI----CLGGAVIDKVVK 384 >gi|205822192|sp|A9M0Y5|MNMA_NEIM0 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 367 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 122/381 (32%), Positives = 186/381 (48%), Gaps = 24/381 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + C QD Sbjct: 1 MNTTANTTNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DA V D I + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 58 FDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 GAD +ATGHY R + G + + +D +DQSYFL+ QL FPLG Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ + Sbjct: 173 GLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G H G++ YT+GQR+GLG+ GEP FV D + +IV L + + +++ Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 + L E + C K R P ++ +D+ + F++ + V GQ+ V Y Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELRYLDDETAELVFDEPQWAVTPGQSAVLY 345 Query: 369 TSDSNEARVLGGGIISGSKRS 389 D LGGGII + + Sbjct: 346 DGDI----CLGGGIIQTTDKP 362 >gi|312622080|ref|YP_004023693.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor kronotskyensis 2002] gi|312202547|gb|ADQ45874.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor kronotskyensis 2002] Length = 360 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 134/370 (36%), Positives = 203/370 (54%), Gaps = 15/370 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDAR 77 +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ + + R+ SCC+ V DAR Sbjct: 2 KKKVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETEDELIREKSCCSLTAVDDAR 61 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV +++ +YVF+ ++ F+ VI F Y G TP PC+ CNR +KF L LG Sbjct: 62 RVAHILDIPYYVFNMKDDFKKEVINYFVDEYIKGRTPNPCIMCNRKIKFELFLKKAMVLG 121 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D +ATGHY + D R ++ R E+DQ+Y L+ TQ+ L FPLG K Sbjct: 122 MDYIATGHYA---IIEYDKSLCRYLLKRSKAREKDQTYVLYNMTQEMLSKTLFPLGRFSK 178 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + VR LA + L +A K DSQ+ICF+ Y +++ GI EG V G ILG+ Sbjct: 179 DEVRKLAEKFNLPVARKPDSQEICFIPDNDYGSFIEKET-GINDEGVYVDTEGNILGKSK 237 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 NYTIGQR+GLG++ G+ ++VV + ++V++G + + + ++N++ Sbjct: 238 AYYNYTIGQRKGLGISTGKRMYVVDIKPEENKVVLGEEDKIFSDGLIAYDLNFI----PF 293 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 D + + KIR + V ++ V V F + + + GQ+ VFY+ D Sbjct: 294 DKLESELEVTAKIRYTAKEAKAKVIPAQNNKVLVKFCEKQRAITPGQSVVFYSGDI---- 349 Query: 377 VLGGGIISGS 386 V+GGGII + Sbjct: 350 VVGGGIIEKA 359 >gi|154484582|ref|ZP_02027030.1| hypothetical protein EUBVEN_02298 [Eubacterium ventriosum ATCC 27560] gi|149734430|gb|EDM50347.1| hypothetical protein EUBVEN_02298 [Eubacterium ventriosum ATCC 27560] Length = 358 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 131/366 (35%), Positives = 200/366 (54%), Gaps = 13/366 (3%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRV 79 + ++AMSGGVDSSV A +K GYD IGVT++LY++ + ++ +CC+ DV DAR V Sbjct: 2 KKALIAMSGGVDSSVAAVFMKEKGYDPIGVTMKLYDNEDINMSKEKTCCSLSDVEDARSV 61 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + +YVF+++ F+ VI F Y G TP PC+DCNR +KF +L + LG D Sbjct: 62 AYKVGFPYYVFNFKAEFKEKVIDKFVGCYMCGMTPNPCIDCNRYLKFEELYRRAKALGCD 121 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 V+ TGHY R R D+ + + + +D +DQSY L+ TQ+QL FPLG+ K+ Sbjct: 122 VIVTGHYARIRF---DEATGKYQLMKGIDDSKDQSYVLYHMTQEQLAHTMFPLGEYTKDE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R A E GL ADK DSQDICF+ G + ++ +G+ + +NG+++G+HNG Sbjct: 179 IRKKAAETGLINADKHDSQDICFIPDGNHMKFIEEYTHKKVGKGNFLDINGKVIGQHNGY 238 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YT+GQR+G+ V +V+ + ++ V+VG + L + + NW+ +A Sbjct: 239 YRYTVGQRKGINVNRDGKHYVLEIRPETNEVVVGRNKDLFTEELVATDFNWISG----EA 294 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 K + R Q + ++G V V F++ + GQ+ V Y D VL Sbjct: 295 PTGEIKVSGRTRYHQPLTEGVAKVLENGDVKVSFDEPIRAITKGQSVVLYDGDV----VL 350 Query: 379 GGGIIS 384 GGG I Sbjct: 351 GGGTIK 356 >gi|189183712|ref|YP_001937497.1| tRNA-specific 2-thiouridylase MnmA [Orientia tsutsugamushi str. Ikeda] gi|189180483|dbj|BAG40263.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Orientia tsutsugamushi str. Ikeda] Length = 369 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 177/379 (46%), Positives = 235/379 (62%), Gaps = 13/379 (3%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L+L + +VVAMSGGVDSS VAA+LK DGY+VIG+T+QLYN A RKG+CCAGQ Sbjct: 2 LNLKVAKEQATIVVAMSGGVDSSTVAAILKEDGYNVIGITMQLYNHDTAINRKGACCAGQ 61 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+YDA+ V + + + HYV +Y+++F+ +VI F SY GETPLPCV CN++VKF DLL+ Sbjct: 62 DIYDAKFVANQLQIPHYVLNYKDKFKKSVIDNFIESYINGETPLPCVQCNQSVKFHDLLN 121 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + L AD L TGHY+R D + + +D ++DQSYFLFATT+ QL L FP Sbjct: 122 FAKDLQADALVTGHYVRRI-----DTANGIELHKAVDSKKDQSYFLFATTKSQLQYLHFP 176 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG+M K+ R A GL IADK DSQDICFV G Y +VV R+ G IVH++G Sbjct: 177 LGNMTKDETRYHANRYGLHIADKPDSQDICFVADGSYHNVVARLKPNAKKPGKIVHIDGY 236 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 ILG H GIIN+TIGQRR +G++ +PL+V+ +D + V VGP L + +NWL Sbjct: 237 ILGEHQGIINFTIGQRRRIGISFSDPLYVINIDAQQNIVYVGPESKLFKTTFMIHSLNWL 296 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 G G + +V+ VK+RS+ V + + V V + E +A GQACV Y Sbjct: 297 GPG---NMLVEPLDVEVKVRSTHSAVQAKLYPYSNSMVKVILNEPEKAIAPGQACVIYKG 353 Query: 371 DSNEARVLGGGIISGSKRS 389 D VLGGG I+ + Sbjct: 354 D----LVLGGGWIAKEQTQ 368 >gi|254448740|ref|ZP_05062197.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma proteobacterium HTCC5015] gi|198261581|gb|EDY85869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [gamma proteobacterium HTCC5015] Length = 359 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 120/374 (32%), Positives = 180/374 (48%), Gaps = 26/374 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A L GY V G+ ++ + C A D+ DA++VCD + + Sbjct: 1 MSGGVDSSVTALTLLEQGYHVEGLFMKNWEEEDPD--SAYCPALIDMKDAQQVCDELEIP 58 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 + ++ + + + V F Y+AG TP P V CN+ +KF L LGAD +ATGHY Sbjct: 59 LHKVNFSKEYWDRVFQHFLDEYSAGRTPNPDVMCNKEIKFKAFLDHALGLGADYIATGHY 118 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 +R DD R + + D +DQSYFL Q +L FP+G+M K VR++A Sbjct: 119 VRRV----DDEDGRVHLYQGADKNKDQSYFLHTLGQAELSRALFPIGEMDKSHVREMAMN 174 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT--- 263 G D +K DS ICF+ + ++ D + + A G + L G +LG HNG++ YT Sbjct: 175 AGFDNHEKKDSTGICFIGERRFRDFLSQYLP--AQPGKVEDLEGTVLGDHNGLMYYTIGQ 232 Query: 264 --IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFED 318 GL + GEP +VV D + + V +L + ++ W+ Sbjct: 233 RQGIGIGGLRNSDGEPWYVVEKDLERNVLKVAQGSEHPALFKTHLDASQLYWVN-----Q 287 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 A +C KIR Q P +++ D V F++ + + GQ+ VFY+ + Sbjct: 288 APDAPLRCEAKIRYRQTQQPCTIEQIDGSDAVVVFDEPQRAITEGQSVVFYSGED----C 343 Query: 378 LGGGIISGSKRSDA 391 LGGGII + D Sbjct: 344 LGGGIIERAFNGDQ 357 >gi|163794310|ref|ZP_02188282.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha proteobacterium BAL199] gi|159180478|gb|EDP64999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha proteobacterium BAL199] Length = 394 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 206/384 (53%), Positives = 254/384 (66%), Gaps = 19/384 (4%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L L RVVVAMSGGVDSSV AALLK GYDV+G+TLQLY+ A RKG+CCAG Sbjct: 10 LGLPGPRSARRVVVAMSGGVDSSVTAALLKEAGYDVVGITLQLYDHGAAVARKGACCAGS 69 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D++DAR V + + + HYV DYE RFR +VI FA SY GETP+PCV CN+TVKF DLL+ Sbjct: 70 DIHDARTVAERLGIPHYVLDYESRFRESVIDDFADSYLRGETPIPCVRCNQTVKFRDLLT 129 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 R LGA+ LATGHY+R L G DG + R +D +DQSYFLFATT +QL LRFP Sbjct: 130 TARDLGAEALATGHYVRRVL--GPDGPE---LHRAVDPGKDQSYFLFATTPEQLAFLRFP 184 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG M KE+ RD AR +GL + DK DSQDICFV G Y +VVK++ G A GDIVHL+G Sbjct: 185 LGSMSKEATRDEARRLGLVVQDKPDSQDICFVPNGNYAEVVKKLRPGAADPGDIVHLDGT 244 Query: 252 ILGRHNGIINYTIGQRRGL---------GVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302 +LG+H+G+I+YT+GQRRG+ G A +PL+VV LD ++ RVIVGPRE+L Sbjct: 245 VLGQHDGVIHYTVGQRRGIGVGGRRGAEGEAATDPLYVVRLDPDARRVIVGPREALAAET 304 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVAS 361 + E+NWLG G + VK+RS Q PV V + G V ++ + GV++ Sbjct: 305 VLAGEVNWLGAD--GGVPESGARAQVKLRSVQAPVTATVYGDAAGGARVVLDQPQYGVSA 362 Query: 362 GQACVFYTSDSNEARVLGGGIISG 385 GQA VFY D ARVLGGG I G Sbjct: 363 GQAAVFYGED--GARVLGGGWIRG 384 >gi|94498089|ref|ZP_01304652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sphingomonas sp. SKA58] gi|94422524|gb|EAT07562.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sphingomonas sp. SKA58] Length = 368 Score = 448 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 191/384 (49%), Positives = 242/384 (63%), Gaps = 21/384 (5%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L + R+VVAMSGGVDSSVVAAL + G +VIGVTLQLY+ A R GSCCAGQ Sbjct: 5 FQLAEPRDQRRIVVAMSGGVDSSVVAALAAKTGAEVIGVTLQLYDHGAAVGRTGSCCAGQ 64 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DAR V D I ++HYVFDYE RFR++VI FA Y AG TP+PCV CN VKF+DL Sbjct: 65 DIRDARAVADRIGIAHYVFDYESRFRDSVIADFADEYMAGRTPIPCVKCNMGVKFTDLFQ 124 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + R LGAD LATGHY+R +G + R D RDQSYFLFATTQ QL LRFP Sbjct: 125 IARDLGADCLATGHYVRRV-----EGAAGAELHRAADPARDQSYFLFATTQAQLDYLRFP 179 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG + K VR++A E+GL +A K DSQDICFV G Y +V+++ G+IVH++G+ Sbjct: 180 LGGLPKSQVREIAAELGLSVALKPDSQDICFVPDGDYAKIVRKLRPDADEGGEIVHVDGR 239 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 ++GRH G+I+YT+GQR+GL + EPL+VV LD + RVIVGP+ +L V L +INW Sbjct: 240 VMGRHRGLIHYTVGQRKGLEIGGQAEPLYVVRLDAEARRVIVGPKAALAVSGALLSDINW 299 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 LG K+RS PVP ++ + + F+ E GVA GQA V Y Sbjct: 300 LGGDFAGP-------LTAKVRSMARPVPARLEGD----RLIFDAPEYGVAPGQAAVLYAG 348 Query: 371 DSNEARVLGGGIISGSKRSDAVEE 394 D RVLGGG I+ ++ + A Sbjct: 349 D----RVLGGGWIASTQGAMAQAA 368 >gi|167644970|ref|YP_001682633.1| tRNA-specific 2-thiouridylase MnmA [Caulobacter sp. K31] gi|205811623|sp|B0SWD8|MNMA_CAUSK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|167347400|gb|ABZ70135.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caulobacter sp. K31] Length = 409 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 198/378 (52%), Positives = 254/378 (67%), Gaps = 9/378 (2%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P R+V AMSGGVDS+V AALL + GYDV+GVTLQLY+ A +KG+CCAGQD+ DAR Sbjct: 35 PVGTRIVAAMSGGVDSTVTAALLAKAGYDVVGVTLQLYDHGAAITKKGACCAGQDILDAR 94 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + I + HYV DYE RF+ VI FA +Y GETP+PCV CN+TVKF DLL V R LG Sbjct: 95 MAAERIGIPHYVLDYESRFKEQVIEEFADAYLRGETPIPCVRCNQTVKFRDLLDVARDLG 154 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A+ +ATGHY++ G + R + R D +DQSYFLFATT +QL LRFPLG M K Sbjct: 155 AEAMATGHYVQRSFAAGAN---RPQLRRAADPAKDQSYFLFATTAEQLDFLRFPLGGMDK 211 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 +VR +A E+GL IADK DSQDICFV +GKY V+ RI AL GD+VH++G++LGRH Sbjct: 212 PTVRLVAAELGLAIADKPDSQDICFVPEGKYTTVIDRIRPHGALPGDLVHMDGRVLGRHE 271 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG-DGLF 316 G+ YTIGQRRGL +A+G+PLFVV +D + +VIVGPRE+L + L+E NWLG + Sbjct: 272 GVTRYTIGQRRGLNIAVGDPLFVVKIDADKRQVIVGPREALLTQALSLKEGNWLGVEDSL 331 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQ----RNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 E A G ++RS+++PVP + N + F+ E GVA GQACV Y + Sbjct: 332 EAAAAAGAPVLARVRSTREPVPGRLTLVPGPNGGEPRLVFDGLEEGVAPGQACVLYDP-A 390 Query: 373 NEARVLGGGIISGSKRSD 390 + RVLGGG I ++R+ Sbjct: 391 DPERVLGGGFIVATERAG 408 >gi|239813406|ref|YP_002942316.1| tRNA-specific 2-thiouridylase MnmA [Variovorax paradoxus S110] gi|239799983|gb|ACS17050.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Variovorax paradoxus S110] Length = 369 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 115/383 (30%), Positives = 175/383 (45%), Gaps = 36/383 (9%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 R+VV +SGGVDS+V A LLK+ G++V+G+ ++ + S+ C + D DA V Sbjct: 3 KQRIVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---YCSSNIDFVDAASV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + ++ +++ V F Y AG TP P V CN +KF L +LGA+ Sbjct: 60 ADVLGIEIEHVNFAADYKDRVFAEFLREYKAGRTPNPDVLCNAEIKFKAFLDHAMRLGAE 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R RL ++ R + + +D +DQSYFL Q QL FP+G++ K Sbjct: 120 KIATGHYARVRL---NETTGRHELLKGLDPSKDQSYFLHRLNQAQLSKTLFPVGELHKTE 176 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E+GL A K DS ICF+ + + + + R + G I G+ LG H G+ Sbjct: 177 VRRIAEEIGLPNAKKKDSTGICFIGERPFREFLNRYISKE--PGPIKDDRGRKLGEHQGL 234 Query: 260 INYTIGQRRGLGVAM------------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304 YT+GQR+GLG+ P FV D + + V L + Sbjct: 235 SFYTLGQRQGLGIGGVKEKGAQRGSGDHSPWFVARKDVEKNTLWVVQGHDHPWLLSSALA 294 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD----GVYVDFEKSEVGVA 360 + +W+ K R Q ++ + F + + V Sbjct: 295 AGDASWVSGEAPAPGRYGS-----KARYRQADAACELEEGGGDPAASFSLRFGEPQWAVT 349 Query: 361 SGQACVFYTSDSNEARVLGGGII 383 GQ+ V Y + R LGGG+I Sbjct: 350 PGQSAVLYDGE----RCLGGGVI 368 >gi|94969297|ref|YP_591345.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Koribacter versatilis Ellin345] gi|189036216|sp|Q1IPC9|MNMA_ACIBL RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|94551347|gb|ABF41271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Koribacter versatilis Ellin345] Length = 370 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 146/379 (38%), Positives = 214/379 (56%), Gaps = 24/379 (6%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-------SCCAG 70 K + VAMSGGVDSS VAA+L+ +GY+++G+T+QL+N R+ + +G CC+ Sbjct: 2 NKSETIAVAMSGGVDSSTVAAMLRAEGYNLVGLTMQLWNQRRLAHHEGFGEPGVGRCCSL 61 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 DVYDARRV +T+ + +YV + E+RF V+ PF Y +G TP+PC CN +KF LL Sbjct: 62 DDVYDARRVAETLAIPYYVVNQEDRFERDVVKPFVEDYLSGRTPIPCSLCNNHLKFDQLL 121 Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 +Q+GA+ +ATGHY R+ R + RP D +DQ+YFLF TQ+QL F Sbjct: 122 RTAQQIGAEKIATGHYARNDFNAQ---TGRWELKRPADRAKDQTYFLFGLTQEQLSRTLF 178 Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-----EGDI 245 PLG K VR+ A+ GL + +K DSQ+ICF+ G Y + G++ Sbjct: 179 PLGHKTKPEVREDAKNHGLKLFEKPDSQEICFIPNGDYKKFLDAYLEEQGESLPDTSGEL 238 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 V +G+++G H GI N+T+GQR+GLGVA G PL+V+ L + +V+VG + L + Sbjct: 239 VTSSGEVVGHHTGIHNFTVGQRKGLGVATGSPLYVIELRGDKRQVVVGNNDELLTRNLRA 298 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQA 364 + +NW+ + + KIR +P +++ DD V V F+ + V GQA Sbjct: 299 KRMNWIAVSD----LAQPMRVHAKIRHKHEPAWATIEKTGDDEVLVTFDDPQRAVTPGQA 354 Query: 365 CVFYTSDSNEARVLGGGII 383 V Y D V+GGG I Sbjct: 355 VVLYDGDV----VVGGGWI 369 >gi|294084590|ref|YP_003551348.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Puniceispirillum marinum IMCC1322] gi|292664163|gb|ADE39264.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Puniceispirillum marinum IMCC1322] Length = 419 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 185/397 (46%), Positives = 261/397 (65%), Gaps = 17/397 (4%) Query: 3 VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62 ++ + +NSL K P D RVVVAMSGGVDSSV AA+L +GY+VIG+TLQLY+ A + Sbjct: 27 TADLSAINSLGFAKAPADTRVVVAMSGGVDSSVTAAMLHDEGYEVIGITLQLYDHGVAVQ 86 Query: 63 RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122 KG+CCAG D++DAR V + + HYV DYE +FR+ V+ FA SY GETP+PCV CN+ Sbjct: 87 TKGACCAGIDIHDARTVSARLGIPHYVLDYESKFRDQVMEDFADSYLRGETPIPCVRCNQ 146 Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 TVKF+DLL+ ++LGAD LATGHY++ + ++ R +D +DQSYFLFATT Sbjct: 147 TVKFTDLLTTAQELGADCLATGHYVQRL-----ETPAGPVLRRGIDASKDQSYFLFATTA 201 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 +Q+ LRFPLG + K+ RDLAR+ GL +++K DSQDICFV G+Y DVV+R+ G Sbjct: 202 EQMDYLRFPLGGLTKDETRDLARKYGLAVSEKPDSQDICFVPNGRYGDVVRRLRPGAVEA 261 Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGE-------PLFVVYLDKNSSRVIVGPR 295 GDIVHL+G +LG+H G+I+YTIGQRRGLG+ + PL+VV +D + RVIVGP+ Sbjct: 262 GDIVHLDGTVLGQHKGVIDYTIGQRRGLGIGGRKDADEADGPLYVVGIDAAAHRVIVGPQ 321 Query: 296 ESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEK 354 +L + ++L E +W+ G A V G ++R++ +P ++ + G V + Sbjct: 322 SALACYEVHLSETSWVAGG---GAPVAGHPVLARLRNTAPAMPAVLEAGEGGCAIVRLDD 378 Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDA 391 + G+A GQA Y + ++ +LGGG IS + + A Sbjct: 379 PQFGIAVGQAAAIYDA-ADPENLLGGGWISAAPLAGA 414 >gi|121606705|ref|YP_984034.1| tRNA-specific 2-thiouridylase MnmA [Polaromonas naphthalenivorans CJ2] gi|205816918|sp|A1VTY5|MNMA_POLNA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|120595674|gb|ABM39113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Polaromonas naphthalenivorans CJ2] Length = 394 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 122/398 (30%), Positives = 185/398 (46%), Gaps = 42/398 (10%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 +DK R+VV +SGGVDS+V A LLK+ G++VIG+ ++ + S+ C + D Sbjct: 1 MDKQHSKQRIVVGLSGGVDSAVTAYLLKQQGHEVIGIFMKNWEDDDDSEF---CSSNIDF 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA V D I + ++ +++ V F Y AG TP P + CN +KF L Sbjct: 58 VDAAAVADVIGIEIEHVNFAANYKDRVFAEFLREYQAGRTPNPDILCNAEIKFKAFLDHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +LGA+ +ATGHY R R ++ + + +D +DQSYFL Q QL FP+G Sbjct: 118 MRLGAEKIATGHYARVR---QNEATGLHELLKGLDPSKDQSYFLHRLNQAQLSKTLFPVG 174 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++ K VR +A E+GL A K DS ICF+ + + D + R A G + + G+IL Sbjct: 175 ELHKTEVRRIADEIGLPNARKKDSTGICFIGERPFRDFLNRYIAKA--PGPVKNDQGRIL 232 Query: 254 GRHNGIINYTIGQRRGLGVAM---------------------GEPLFVVYLDKNSSRVIV 292 G H G+ YT+GQR+GLG+ EP FV D +S+ + V Sbjct: 233 GEHVGLSFYTLGQRQGLGIGGVKARGADLKAAQARGQRGVGEHEPWFVARKDMDSNTLWV 292 Query: 293 GP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGV 348 L+ + ++ +W+ + K R Q V G Sbjct: 293 VQGHDHPWLQSTLLNAQDCSWVAGSAPALGAMA-----AKTRYRQADAACELVSATAGGC 347 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 + F ++ V GQ+ V Y + LGGG+I+ S Sbjct: 348 ELAFLDAQWAVTPGQSAVLYQGEV----CLGGGVIASS 381 >gi|148285130|ref|YP_001249220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Orientia tsutsugamushi str. Boryong] gi|205816896|sp|A5CFJ6|MNMA_ORITB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|146740569|emb|CAM81183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Orientia tsutsugamushi str. Boryong] Length = 369 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 176/379 (46%), Positives = 235/379 (62%), Gaps = 13/379 (3%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L+L + +VVAMSGGVDSS VAA+LK DGY+VIG+T+QLYN A RKG+CCAGQ Sbjct: 2 LNLKVAKEQATIVVAMSGGVDSSTVAAILKEDGYNVIGITMQLYNHDTAINRKGACCAGQ 61 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+YDA+ V + + + HYV +Y+++F+ +VI F SY GETPLPCV CN++VKF DLL+ Sbjct: 62 DIYDAKFVANQLQIPHYVLNYKDKFKESVIDNFIESYINGETPLPCVQCNQSVKFHDLLN 121 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + L AD L TGHY+R D + + +D ++DQSYFLFATT+ QL L FP Sbjct: 122 FAKDLQADALVTGHYVRRI-----DTANGIELHKAVDSKKDQSYFLFATTKSQLQYLHFP 176 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG+M K+ R A GL IADK DSQDICFV G Y +VV ++ G IVH++G Sbjct: 177 LGNMTKDETRYHANRYGLHIADKPDSQDICFVADGAYHNVVAKLKPNAKKPGKIVHIDGY 236 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 ILG H GIIN+TIGQRR +G++ +PL+V+ +D + V VGP L + +NWL Sbjct: 237 ILGEHQGIINFTIGQRRRIGISFSDPLYVINIDAQQNIVYVGPESKLFKTTFMIHSLNWL 296 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 G G + +V+ VK+RS+ V + + V V + E +A GQACV Y Sbjct: 297 GPG---NMLVEPLDVEVKVRSTHSAVRAKLYPYSNSMVKVILNEPEKAIAPGQACVIYKG 353 Query: 371 DSNEARVLGGGIISGSKRS 389 D VLGGG I+ + Sbjct: 354 D----LVLGGGWIAKEQTQ 368 >gi|167751458|ref|ZP_02423585.1| hypothetical protein EUBSIR_02454 [Eubacterium siraeum DSM 15702] gi|167655704|gb|EDR99833.1| hypothetical protein EUBSIR_02454 [Eubacterium siraeum DSM 15702] Length = 358 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 140/365 (38%), Positives = 210/365 (57%), Gaps = 13/365 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78 + + V+AMSGGVDSSV A L+K+ G+D IGVT++L+ N R+ SCC+ DV DAR Sbjct: 2 NNKAVIAMSGGVDSSVAAYLMKQRGFDCIGVTMKLFANEDIGISREHSCCSLDDVEDARS 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V ++++ +YVF++ +RF VI F ++Y G TP PC+DCNR +KF L ++L Sbjct: 62 VAYSLDMPYYVFNFSDRFETDVIDRFINAYENGITPNPCIDCNRYLKFDKLYMRAKELDR 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGHY R V DG R ++ + +D +DQSY L+ TQ+QL FPLG+M+K Sbjct: 122 DYVVTGHYAR----VEKDGNGRFLLKKALDDTKDQSYVLYCLTQEQLSHTIFPLGEMRKS 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R++A G A K+DSQDICFVQ G Y D +++ +GD + +G ++GRH G Sbjct: 178 QAREIAESQGFINARKADSQDICFVQNGSYADFIEQYTGKNYPDGDFLDKDGNVIGRHKG 237 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 +I YT+GQR+GLG++ EPL+V ++ S+ V + + L + +IN + Sbjct: 238 VIRYTVGQRKGLGISAPEPLYVKAVNPVSNTVTLSYNDWLYSSIVKAGDINLISV----P 293 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + K+R V +N D + F++ + V GQA V Y D+ V+ Sbjct: 294 EIKGEMRVKAKVRYRHTEQWATVTQNGDTITAVFDEPQRAVTCGQALVLYDGDT----VV 349 Query: 379 GGGII 383 GGG I Sbjct: 350 GGGTI 354 >gi|312135463|ref|YP_004002801.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor owensensis OL] gi|311775514|gb|ADQ05001.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor owensensis OL] Length = 360 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 134/370 (36%), Positives = 205/370 (55%), Gaps = 15/370 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDAR 77 +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ + + R+ SCC+ V DAR Sbjct: 2 KKKVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETEDELIREKSCCSLTAVDDAR 61 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV +++ +YVF+ ++ F+ VI F Y G TP PC+ CNR +KF L LG Sbjct: 62 RVAHILDIPYYVFNMKDNFKKEVINYFVGEYIKGRTPNPCIMCNRKIKFELFLKKAIALG 121 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D +ATGHY + D+ R ++ R E+DQ+Y L+ TQ+ L FPLG K Sbjct: 122 MDYIATGHYA---IIEYDNTLCRYLLKRSKAREKDQTYVLYNMTQEILSKTIFPLGRFSK 178 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + VR LA + L +A K DSQ+ICF+ Y +++ GI EG V G ILG+ Sbjct: 179 DEVRKLAEKFKLPVAKKPDSQEICFIPDNDYGSFIEKET-GINDEGVYVDTEGNILGKSK 237 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 NYTIGQR+GLG++ G+ ++VV + + ++V++G + + + ++N++ Sbjct: 238 AYYNYTIGQRKGLGISTGKRMYVVDIKPDENKVVLGEEDKIFSDGLIASDLNFI----LF 293 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 D + + KIR + V ++ V V F + + + GQ+ VFY+ D Sbjct: 294 DKLESELEVTAKIRYTAKETKAKVIPVQNNKVLVKFYEKQRAITPGQSVVFYSGDI---- 349 Query: 377 VLGGGIISGS 386 V+GGGII + Sbjct: 350 VVGGGIIEKA 359 >gi|222529697|ref|YP_002573579.1| tRNA-specific 2-thiouridylase MnmA [Caldicellulosiruptor bescii DSM 6725] gi|222456544|gb|ACM60806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor bescii DSM 6725] Length = 360 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 135/370 (36%), Positives = 203/370 (54%), Gaps = 15/370 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDAR 77 +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ + + R+ SCC+ V DAR Sbjct: 2 KKKVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETEDELIREKSCCSLTAVDDAR 61 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV +++ +YVF+ ++ F+ VI F Y G TP PC+ CNR +KF L LG Sbjct: 62 RVAHILDIPYYVFNMKDDFKKEVINYFVDEYIKGRTPNPCIMCNRKIKFELFLKKAMVLG 121 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D +ATGHY + D R I+ R E+DQ+Y L+ TQ+ L FPLG K Sbjct: 122 MDYIATGHYA---IIEYDKSLYRYILKRSKAREKDQTYVLYNMTQEMLSKTIFPLGRFSK 178 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + VR LA + L +A K DSQ+ICF+ Y +++ GI EG V G ILG+ Sbjct: 179 DEVRKLAEKFKLPVARKPDSQEICFIPDNDYGSFIEKET-GINDEGVYVDTEGNILGKSK 237 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 NYTIGQR+GLG++ G+ ++VV + ++V++G + + + ++N++ Sbjct: 238 AYYNYTIGQRKGLGISTGKRMYVVDIKPEENKVVLGEEDKVFSDGLIASDLNFI----LF 293 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 D + + KIR + V ++ V V F + + + GQ+ VFY+ D Sbjct: 294 DKLESELEVTAKIRYTAKEAKAKVIPVQNNKVLVKFYEKQRAITPGQSVVFYSGDI---- 349 Query: 377 VLGGGIISGS 386 V+GGGII + Sbjct: 350 VVGGGIIEKA 359 >gi|319791106|ref|YP_004152746.1| tRNA (5-methylaminomethyL-2-thiouridylate)-methyltransferase [Variovorax paradoxus EPS] gi|315593569|gb|ADU34635.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Variovorax paradoxus EPS] Length = 366 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 116/380 (30%), Positives = 176/380 (46%), Gaps = 33/380 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 R+VV +SGGVDS+V A LLK+ G++V+G+ ++ + S+ C + D DA V Sbjct: 3 KQRIVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---YCSSNIDFIDAASV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + ++ +++ V F Y AG TP P V CN +KF L +LGA+ Sbjct: 60 ADVLGIEIEHVNFAADYKDRVFAEFLREYKAGRTPNPDVLCNAEIKFKAFLDHAMRLGAE 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R ++ R + + +D +DQSYFL Q QL FP+G++ K Sbjct: 120 KIATGHYARVRH---NEVTGRHELLKGLDPSKDQSYFLHRLNQAQLSKTLFPVGELHKTE 176 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E+GL A K DS ICF+ + + D + R + G I G+ LG H G+ Sbjct: 177 VRRIAEEIGLPNAKKKDSTGICFIGERPFRDFLNRYISKE--PGPIKDDRGRKLGEHQGL 234 Query: 260 INYTIGQRRGLGVAM------------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304 YT+GQR+GLG+ P FV D + + V L + Sbjct: 235 SFYTLGQRQGLGIGGVKEKGAQRGSGDHSPWFVARKDIEKNTLWVVQGHDHPWLLSSALN 294 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQ 363 + +W+ K R Q + + +G + + F + V GQ Sbjct: 295 ADDASWVSGEAPAAGSYGS-----KARYRQADAGCELSDDANGAFSLRFGAPQWAVTPGQ 349 Query: 364 ACVFYTSDSNEARVLGGGII 383 + V Y + R LGGG+I Sbjct: 350 SAVLYDGE----RCLGGGVI 365 >gi|14195277|sp|Q9JTJ9|MNMA_NEIMA RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 367 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 116/381 (30%), Positives = 181/381 (47%), Gaps = 24/381 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + C QD Sbjct: 1 MNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 58 FDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 GAD +ATGHY R + G + + +D +DQSYFL+ QL FPLG Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDQNKDQSYFLYRLKPFQLERAIFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ + Sbjct: 173 GLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230 Query: 254 GRHNGIINYTIGQRR-GLGVAMGEPLFVVYLDKNSSR--VIVGP-RESLEVHRIYLREIN 309 G H G++ YT+GQR+ GEP FV D + V+ G L + + +++ Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGGGEPWFVAAKDLTKNELMVVQGHDHPLLYTRSLVMNDLS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 + ++ K R P ++ +D+ V + F++ + V GQ+ V Y Sbjct: 291 FTLPERPKEG-----HYTCKTRYRMADAPCELRYLDDETVELVFDEPQWAVTPGQSAVLY 345 Query: 369 TSDSNEARVLGGGIISGSKRS 389 D LGGGII + + Sbjct: 346 DGDI----CLGGGIIQSTDKP 362 >gi|121635213|ref|YP_975458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis FAM18] gi|166235071|sp|A1KUY0|MNMA_NEIMF RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|120866919|emb|CAM10679.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis FAM18] gi|325130624|gb|EGC53368.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis OX99.30304] gi|325132760|gb|EGC55443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis M6190] gi|325136777|gb|EGC59377.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis M0579] gi|325138645|gb|EGC61204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis ES14902] gi|325204520|gb|ADY99973.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis M01-240355] Length = 367 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 121/381 (31%), Positives = 186/381 (48%), Gaps = 24/381 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + C QD Sbjct: 1 MNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DA V D I + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 58 FDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 GAD +ATGHY R + G + + +D +DQSYFL+ QL FPLG Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ + Sbjct: 173 GLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G H G++ YT+GQR+GLG+ GEP FV D + +IV L + + +++ Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 + L E + C K R P ++ +++ + F++ + V GQ+ V Y Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELRYLDEETAELVFDEPQWAVTPGQSAVLY 345 Query: 369 TSDSNEARVLGGGIISGSKRS 389 D LGGGII + + Sbjct: 346 DGDI----CLGGGIIQTTDKP 362 >gi|325266287|ref|ZP_08132966.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Kingella denitrificans ATCC 33394] gi|324982249|gb|EGC17882.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Kingella denitrificans ATCC 33394] Length = 389 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 124/376 (32%), Positives = 185/376 (49%), Gaps = 24/376 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ +VV +SGGVDSSV AALLKR G +V GV +Q + + + C QD DA Sbjct: 29 KNQNIVVGLSGGVDSSVTAALLKRGGANVRGVFMQNWEDDDSDE---YCSIKQDSLDAMA 85 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + + ++ ++++ V F Y AG TP P V CN +KF L GA Sbjct: 86 VADIVGIDIDIVNFAAQYKDKVFAYFLQEYQAGRTPNPDVLCNAEIKFKCFLDYAVAEGA 145 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + G + R D +DQSYFL+ QL FPLG ++K Sbjct: 146 EAIATGHYARKEVRDG-----VHYLLRGADGNKDQSYFLYRLQPYQLQKALFPLGHLEKP 200 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR LA E GL A K DS ICF+ + + + +++ G++V G+I+G H G Sbjct: 201 EVRRLAVEFGLPTAAKKDSTGICFIGERPFREFLQKYLP--THNGNMVTPEGKIVGEHVG 258 Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSR--VIVGP-RESLEVHRIYLREINWLGDG 314 + YTIGQR+GLG+ GEP FV + + V+ G E L + + +++W Sbjct: 259 LTFYTIGQRKGLGIGGAGEPWFVAGKNLPKNELLVVQGHDHELLYTRSLQMNQLSWTLPE 318 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + + K R +Q +DD + F++ + V GQ+ V Y + Sbjct: 319 KPREG-----RYTCKTRYRMTDAACTLQYLSDDTAELQFDEPQWAVTHGQSAVLYDGEV- 372 Query: 374 EARVLGGGIISGSKRS 389 LGGGII+ + + Sbjct: 373 ---CLGGGIITATDKP 385 >gi|326575288|gb|EGE25216.1| tRNA-specific 2-thiouridylase MnmA [Moraxella catarrhalis CO72] Length = 392 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 130/386 (33%), Positives = 199/386 (51%), Gaps = 28/386 (7%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K KD++V+V MSGGVDSSV A LL++ G+ V G+ ++ + S+ C A D+ D Sbjct: 15 KALKDIKVIVGMSGGVDSSVSAVLLQQVGFHVEGLFMKNWEEDDGSE---YCTAMTDLAD 71 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR- 134 A+ V D I + + ++ + + V F + Y AG TP P + CN+ +KF L Sbjct: 72 AQAVADKIGIKLHTANFAMEYWDNVFEHFLAEYQAGRTPNPDILCNKEIKFKAFLDYASG 131 Query: 135 ---QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R G + + R +D +DQSYFL A ++ FP Sbjct: 132 SQFGLGADFIATGHYARR----GFSQDGKAQLLRGLDTNKDQSYFLHAVGGDKIAKTLFP 187 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 +G+++K VR +A++ L A+K DS ICF+ + K+ D +++ A +GDI +G Sbjct: 188 IGELEKPQVRAIAQKYDLITANKKDSTGICFIGERKFKDFLQQYLP--AQKGDIYTDDGI 245 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRES---LEVHRI 303 +G H+G++ YTIGQR G+G+ EP FV++ D ++R+IVG L+ + Sbjct: 246 KIGTHDGLMYYTIGQRGGIGIGGVANRPEEPWFVLHKDLTNNRLIVGQGHDHAMLQSTEL 305 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVA 360 +++W + GF+C K R Q V D V V F ++ V Sbjct: 306 TAYKLDWGIAPPVQIFGEQGFRCTAKTRYRQSDQDCTVFALDETGDTVKVVFGDAQRAVT 365 Query: 361 SGQACVFYTSDSNEARVLGGGIISGS 386 GQ+ VFY D LGGG+I G+ Sbjct: 366 QGQSVVFYDGDI----CLGGGVIDGT 387 >gi|264680822|ref|YP_003280732.1| Predicted tRNA(5-methylaminomethyl-2- thiouridylate)methyltransferase [Comamonas testosteroni CNB-2] gi|262211338|gb|ACY35436.1| Predicted tRNA(5-methylaminomethyl-2- thiouridylate)methyltransferase [Comamonas testosteroni CNB-2] Length = 376 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 126/388 (32%), Positives = 188/388 (48%), Gaps = 32/388 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVVV +SGGVDS+V A LLK+ G++V+G+ ++ + S+ C + D DA V Sbjct: 4 KQRVVVGLSGGVDSAVTAYLLKKQGHEVVGIFMKNWEDDDDSE---YCSSNIDFVDAAAV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + ++ +++ V F Y AG TP P V CN +KF L +LGA+ Sbjct: 61 ADVIGIEIEHVNFAADYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAE 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R + + + + +D +DQSYFL Q QL FP+G++ K Sbjct: 121 KIATGHYARVR---QNPSTQLFELLKGLDNSKDQSYFLHRLNQAQLSKAMFPVGELHKTE 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E+GL A K DS ICF+ + + D + R + G I+ + LG+H G+ Sbjct: 178 VRRIAEEIGLPNARKKDSTGICFIGERPFRDFLNRYISKE--PGPILDDRNRKLGKHVGL 235 Query: 260 INYTIGQRRGLGVAM------------GEPLFVVYLDKNSS--RVIVGP-RESLEVHRIY 304 YT+GQR GLG+ P FV + + + RV+ G L H + Sbjct: 236 SFYTLGQRSGLGIGGVKEKGAARGAGDHAPWFVARKEMDKNILRVVQGHDHPLLLSHALL 295 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQ 363 +++W+ A +G K R Q P + Q D G +DF +++ V GQ Sbjct: 296 ADQVSWVAGH----APAEGKAYGSKTRYRQPDSPALISQATDAGFRLDFPEAQWAVTPGQ 351 Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDA 391 + V Y D LGGGII+ + A Sbjct: 352 SAVLYDGDV----CLGGGIIAQVDPAAA 375 >gi|261392212|emb|CAX49726.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis 8013] Length = 367 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 122/381 (32%), Positives = 186/381 (48%), Gaps = 24/381 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + C QD Sbjct: 1 MNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DA V D I + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 58 FDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 GAD +ATGHY R + G + + +D +DQSYFL+ QL FPLG Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ + Sbjct: 173 GLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G H G++ YT+GQR+GLG+ GEP FV D + +IV L + + +++ Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 + L E + C K R P ++ +D+ + F++ + V GQ+ V Y Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELRYLDDETAELVFDEPQWAVTPGQSAVLY 345 Query: 369 TSDSNEARVLGGGIISGSKRS 389 D LGGGII + + Sbjct: 346 DGDI----CLGGGIIQSTDKP 362 >gi|254669809|emb|CBA04142.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis alpha153] Length = 367 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 118/381 (30%), Positives = 182/381 (47%), Gaps = 24/381 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + C QD Sbjct: 1 MNTTANTTNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 58 FDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 GAD +ATGHY R + G + + +D +DQSYFL+ QL FPLG Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ + Sbjct: 173 GLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230 Query: 254 GRHNGIINYTIGQRR-GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G H G++ YT+GQR+ GEP FV D + +IV L + + +++ Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGGGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 + L E + C K R P ++ +D+ + F++ + V GQ+ V Y Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELRYLDDETAELVFDEPQWAVTPGQSAVLY 345 Query: 369 TSDSNEARVLGGGIISGSKRS 389 D LGGGII + + Sbjct: 346 EGDV----CLGGGIIQSTDKP 362 >gi|320108171|ref|YP_004183761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Terriglobus saanensis SP1PR4] gi|319926692|gb|ADV83767.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Terriglobus saanensis SP1PR4] Length = 389 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 148/380 (38%), Positives = 208/380 (54%), Gaps = 28/380 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-------SRKASKRKGSCCAGQDVYD 75 + VAMSGGVDSS VAALL+ G+ ++G+TLQL+N + +G CC+ DVYD Sbjct: 20 IAVAMSGGVDSSAVAALLRSQGHTLVGLTLQLWNQRRLAGHEGMPEQVRGRCCSIDDVYD 79 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 ARRV + + + +YV + +ERF V+ PF + Y AG TP+PC CN +KF LL RQ Sbjct: 80 ARRVAEQLEIPYYVVNQQERFEADVVKPFVAEYLAGRTPIPCTLCNNHLKFDQLLLTARQ 139 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 +GA+ +ATGHY R+ D + R I+ RP D +DQ+YFLF TQ QL FPLG M Sbjct: 140 IGAEKIATGHYARNEF---DVARNRWILKRPTDRSKDQTYFLFGLTQPQLARTLFPLGHM 196 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-----EGDIVHLNG 250 +K +VR +A E L +A K DSQ+ICF+ G Y + G++V G Sbjct: 197 EKPAVRAMAEEHDLAVAHKPDSQEICFIPGGDYKAFLAAYLDDQDQAMPDTAGELVDTTG 256 Query: 251 QILGRHNGIINYTIGQRRG----LGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 +G H GI N+T+GQR+G L P +V+ +D + V VG + L V + Sbjct: 257 NTVGHHTGIHNFTVGQRKGVQQNLNAHAASPFYVLGIDATTHNVTVGSDDDLFVRTARID 316 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365 +NW+ E + KIR +P P + N+DG + + F++ + V GQ+ Sbjct: 317 RLNWISIATLETP----LRVEAKIRHRHEPAPATIAPNEDGTITLTFDEPQRAVTPGQSA 372 Query: 366 VFYTSDSNEARVLGGGIISG 385 VFY D V+GGG IS Sbjct: 373 VFYQDD----EVVGGGWISS 388 >gi|308389689|gb|ADO32009.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Neisseria meningitidis alpha710] Length = 367 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 122/381 (32%), Positives = 186/381 (48%), Gaps = 24/381 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + C QD Sbjct: 1 MNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DA V D I + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 58 FDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 GAD +ATGHY R + G + + +D +DQSYFL+ QL FPLG Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ + Sbjct: 173 GLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G H G++ YT+GQR+GLG+ GEP FV D + +IV L + + +++ Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 + L E + C K R P ++ +D+ + F++ + V GQ+ V Y Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELRYLDDETAELVFDEPQWAVTPGQSAVLY 345 Query: 369 TSDSNEARVLGGGIISGSKRS 389 D LGGGII + + Sbjct: 346 EGDV----CLGGGIIQSTDKP 362 >gi|330428736|gb|AEC20070.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pusillimonas sp. T7-7] Length = 379 Score = 447 bits (1151), Expect = e-123, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 182/386 (47%), Gaps = 30/386 (7%) Query: 13 DLDK-NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 D+ K + RVV+ MSGGVDSSV A LLK GYDV+G+ ++ + S+ C Q Sbjct: 8 DMTKVSATKGRVVIGMSGGVDSSVAAWLLKEQGYDVLGLFMKNWEDDDDSE---YCSTRQ 64 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D DA V D I V ++ +++ V F Y+AG TP P V CN +KF L Sbjct: 65 DWLDAASVADLIGVDIEAVNFATEYKDRVFADFLREYSAGRTPNPDVLCNAEIKFKAFLD 124 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +ATGHY R R +G + + + +DL +DQSYFL Q QL FP Sbjct: 125 HAMTLGADYIATGHYARVRSIQTPNGTQH-QLLKALDLSKDQSYFLHRLNQAQLARTLFP 183 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG++ K VR LA+E+ L A K DS ICF+ + + + + R A G I G Sbjct: 184 LGEIPKTEVRRLAQELQLPNAAKKDSTGICFIGERPFREFLNRYLPTHA--GPIKTPEGV 241 Query: 252 ILGRHNGIINYTIGQRRGLGVAM----------GEPLFVVYLDKNSSRVIVGP---RESL 298 ++G H G+ YT+GQR+GLG+ + + D +S+ + V L Sbjct: 242 VVGEHQGLSFYTLGQRKGLGIGGVKGRQRDDGTADAWYTARKDLDSNTLYVVQGHDHPWL 301 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP-VPVFVQRNDDGVYVDFEKSEV 357 + ++ +W+ E K R Q V + + + F++ + Sbjct: 302 LASSLNAQDASWVAGYAPEPG-----SYAAKSRYRQADAVCALAGVSGNRFSLAFQEEQW 356 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 V GQ+ V Y D LGGGII Sbjct: 357 AVTPGQSAVLYDKDV----CLGGGII 378 >gi|227872028|ref|ZP_03990409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oribacterium sinus F0268] gi|227842120|gb|EEJ52369.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oribacterium sinus F0268] Length = 362 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 137/370 (37%), Positives = 206/370 (55%), Gaps = 15/370 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGSCCAGQDVYDARRVC 80 + ++AMSGGVDSSV AAL++ GYD IG+T++LY+S R +CC +DV DAR+V Sbjct: 3 KALIAMSGGVDSSVAAALMQEKGYDCIGITMKLYDSETGQACRSRTCCTLEDVEDARQVA 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 T+++ YV ++++ F+ VI+PF +Y G TP PC+ CNR +K L +L Sbjct: 63 STLSMPFYVLNFKDDFQKKVILPFVETYENGGTPNPCIRCNRFMKHDKLYQRAEELSCSY 122 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199 + TGHY R D+ R ++ + D ++DQSY L+ +Q+QL FPLG+ KE Sbjct: 123 IVTGHYARIE---KDESSGRYLLKKAKDEKKDQSYVLYFLSQEQLAHTLFPLGEYSSKEE 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A + G +DK DSQDICFV G Y D +++ GD V NG+ LG H G Sbjct: 180 VREIADKYGFINSDKPDSQDICFVTNGDYGDFLEKFRGKPYPSGDFVDENGKKLGEHRGT 239 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 + YTIGQR+GLG+++ +P++V + ++VI+ +E + + + NW+ Sbjct: 240 VRYTIGQRKGLGLSLKKPMYVSGKNIEKNQVILSDKEGIYFEGLLANDFNWISL-----P 294 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + K R + VP V ++G V++ F + E V GQA V Y D VL Sbjct: 295 PTEDMAVEAKTRYNGKAVPAIVSVRENGDVFLRFPEKERAVTKGQAVVLYDGD----LVL 350 Query: 379 GGGIISGSKR 388 GGG I + Sbjct: 351 GGGTIVEGYK 360 >gi|256383871|gb|ACU78441.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma mycoides subsp. capri str. GM12] gi|256384702|gb|ACU79271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma mycoides subsp. capri str. GM12] gi|296455514|gb|ADH21749.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 375 Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats. Identities = 125/383 (32%), Positives = 192/383 (50%), Gaps = 23/383 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72 +VVV +SGGVDSSV LL + GY+V G+ ++ ++S + G+ C QD Sbjct: 2 KQKVVVGLSGGVDSSVACYLLLQQGYEVEGLFMRNWDSATNNDILGNININNDICPQEQD 61 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DA+ V D +N+ + D+ + + + V + F Y TP P + CN+ +KF L+ Sbjct: 62 YLDAKAVADKLNIKLHRVDFIKEYWDYVFLYFIEEYKKARTPNPDILCNKYIKFDKFLNY 121 Query: 133 T-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 QL AD +A GHY + + ++ + + D +DQ+YFL Q QL FP Sbjct: 122 AINQLNADYIAMGHYAKVEF---NKTTKQYELFKASDTNKDQTYFLSQLNQNQLSKTLFP 178 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NG 250 L ++ KE VR +A E L A+K DS ICF+ + + D ++ + G+IV + Sbjct: 179 LANLTKEQVRKIALEQNLITANKKDSTGICFIGERHFTDFLQNYIP--SQTGNIVDIKTN 236 Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLR 306 ++LG+H GI+ YTIGQR+G+ + M EP +V D + V + L ++ Sbjct: 237 KVLGQHIGIMYYTIGQRKGIHLSGMSEPYYVADKDVEKKILYVCSTSDQSYLYSTSCFVN 296 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQAC 365 +INW+ D + V+ FKC K R Q+ V V++ DD V FEK + GQ Sbjct: 297 DINWILDLSKYVSDVNQFKCQAKFRYRQNDNNVVVKKIDDNNYQVIFEKPLKAITIGQQA 356 Query: 366 VFYTSDSNEARVLGGGIISGSKR 388 VFY D LGG +I + Sbjct: 357 VFYLDDI----CLGGAVIDKVVK 375 >gi|15677407|ref|NP_274563.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis MC58] gi|14195280|sp|Q9JYJ6|MNMA_NEIMB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|7226803|gb|AAF41910.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis MC58] gi|316983800|gb|EFV62780.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis H44/76] gi|325199845|gb|ADY95300.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis H44/76] Length = 367 Score = 446 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 122/381 (32%), Positives = 186/381 (48%), Gaps = 24/381 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + C QD Sbjct: 1 MNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DA V D I + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 58 FDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 GAD +ATGHY R + G + + +D +DQSYFL+ QL FPLG Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ + Sbjct: 173 GLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G H G++ YT+GQR+GLG+ GEP FV D + +IV L + + +++ Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 + L E + C K R P ++ +D+ + F++ + V GQ+ V Y Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELRYLDDETAELVFDEPQWAVTPGQSAVLY 345 Query: 369 TSDSNEARVLGGGIISGSKRS 389 D LGGGII + + Sbjct: 346 DGDI----CLGGGIIQTTDKP 362 >gi|313665411|ref|YP_004047282.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma leachii PG50] gi|312949863|gb|ADR24459.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma leachii PG50] Length = 375 Score = 446 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 120/383 (31%), Positives = 189/383 (49%), Gaps = 23/383 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72 +VVV +SGGVDSSV LL + GY+V G+ ++ ++S + G+ C QD Sbjct: 2 KQKVVVGLSGGVDSSVACYLLLQQGYEVEGLFMRNWDSATNNDILGNANINNDICPQEQD 61 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DA+ V D +N+ + D+ + + + V F Y TP P + CN+ +KF L+ Sbjct: 62 YLDAKAVADKLNIKLHRVDFIKEYWDYVFSYFIEEYKKARTPNPDILCNKYIKFDKFLNY 121 Query: 133 T-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 QL AD +A GHY + + + + + D +DQ+YFL Q+QL FP Sbjct: 122 AINQLNADYIAMGHYAKVEFNKTTN---QYELIKASDTNKDQTYFLSQLNQKQLSKTLFP 178 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NG 250 L ++ KE VR +A + L A+K DS ICF+ + + + ++ GDIV + Sbjct: 179 LANLTKEQVRKIALKQNLITANKKDSTGICFIGERSFTNFLQNYIPN--QTGDIVDIKTN 236 Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLR 306 ++LG+H G++ YTIGQR+G+ + M EP +V D + + V + L + Sbjct: 237 KVLGQHIGVMYYTIGQRKGINLSGMSEPYYVADKDVKKNILYVCSTSDQSYLHSTSCLVN 296 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQAC 365 +INW+ D ++ F+C K R Q V V++ DD V F+K + GQ Sbjct: 297 DINWILDVSKYVDDINQFECQAKFRYRQIDNKVVVKKIDDNNYQVIFKKPLKAITIGQQA 356 Query: 366 VFYTSDSNEARVLGGGIISGSKR 388 VFY +D LGG +I + Sbjct: 357 VFYLNDI----CLGGAVIDKVIK 375 >gi|269217070|ref|ZP_06160924.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Slackia exigua ATCC 700122] gi|269129207|gb|EEZ60292.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Slackia exigua ATCC 700122] Length = 362 Score = 446 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 144/372 (38%), Positives = 203/372 (54%), Gaps = 19/372 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-----KASKRKGSCCAGQDVYD 75 RV+V MSGGVDSSV A +LK+ GY+VIG T++L+ S S +CC+ DV D Sbjct: 3 KRVMVGMSGGVDSSVTAYVLKQQGYEVIGATMRLHGSDLPGRDARSCASRTCCSLDDVED 62 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+ V + ++H D+ +RF +AVI PF +Y TP PC+DCNR +KF +L Sbjct: 63 AKSVARRLGIAHRTIDFTDRFEDAVIKPFVRAYETARTPNPCIDCNRRLKFGSMLERALD 122 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LG D +ATGHY + R + R D +DQSY L++ TQ QL PLG M Sbjct: 123 LGCDYVATGHYAQIVRRGD-----RFALVRGADASKDQSYVLYSLTQYQLAHTLLPLGGM 177 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +K VR +A E G ADK +SQDICF+ G Y ++R + G+I G ++GR Sbjct: 178 RKSEVRAIAAEQGFINADKPESQDICFIPDGDYVGFLERYSGHTPQPGEIRDEAGAVIGR 237 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H+GI ++T+GQR+G+G+A PL+VV D ++VGP++SL + NW+ D Sbjct: 238 HSGIESFTVGQRKGIGIAASGPLYVVAKDARDHALVVGPKDSLLSDGCVADDWNWVAD-- 295 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374 + F+ VK Q P P V+R DG V + + A GQA V Y D Sbjct: 296 --PEDLASFEVMVKTHYRQTPHPARVERRQDGTVRIVYASPARLAAPGQAVVVYQGD--- 350 Query: 375 ARVLGGGIISGS 386 V+GGG ++ + Sbjct: 351 -EVIGGGTVAST 361 >gi|221069865|ref|ZP_03545970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Comamonas testosteroni KF-1] gi|220714888|gb|EED70256.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Comamonas testosteroni KF-1] Length = 376 Score = 446 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 125/388 (32%), Positives = 188/388 (48%), Gaps = 32/388 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVVV +SGGVDS+V A LLK+ G++V+G+ ++ + S+ C + D DA V Sbjct: 4 KQRVVVGLSGGVDSAVTAYLLKQQGHEVVGIFMKNWEDDDDSE---YCSSNIDFVDAAAV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + ++ +++ V F Y AG TP P V CN +KF L +LGA+ Sbjct: 61 ADVIGIEIEHVNFAADYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAE 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R + + + + +D +DQSYFL Q QL FP+G++ K Sbjct: 121 KIATGHYARVR---QNPSTQLFELLKGLDNSKDQSYFLHRLNQAQLSKAMFPVGELHKTE 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E+GL A K DS ICF+ + + D + R + G I+ + LG+H G+ Sbjct: 178 VRRIAEEIGLPNARKKDSTGICFIGERPFRDFLNRYISKE--PGPILDDRNRKLGKHVGL 235 Query: 260 INYTIGQRRGLGVAM------------GEPLFVVYLDKNSS--RVIVGP-RESLEVHRIY 304 YT+GQR GLG+ P FV + + + RV+ G L H + Sbjct: 236 SFYTLGQRSGLGIGGVKEKGAARGAGDHAPWFVARKEMDKNILRVVQGHDHPLLLSHALL 295 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQ 363 +++W+ A G K R Q P + Q ++ G +DF +++ V GQ Sbjct: 296 ADQVSWVAGH----APAQGKAYGSKTRYRQPDSPALISQASEAGFRLDFPEAQWAVTPGQ 351 Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDA 391 + V Y D LGGGII+ + A Sbjct: 352 SAVLYDGDV----CLGGGIIAQVDPAAA 375 >gi|254672922|emb|CBA07279.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis alpha275] Length = 367 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 117/381 (30%), Positives = 182/381 (47%), Gaps = 24/381 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + C QD Sbjct: 1 MNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DA V D + + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 58 FDAIAVADIVGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 GAD +ATGHY R + G + + +D +DQSYFL+ QL FPLG Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ + Sbjct: 173 GLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230 Query: 254 GRHNGIINYTIGQRR-GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G H G++ YT+GQR+ GEP FV D + +IV L + + +++ Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGGGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 + L E + C K R P ++ +++ + F++ + V GQ+ V Y Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELRYLDEETAELVFDEPQWAVTPGQSAVLY 345 Query: 369 TSDSNEARVLGGGIISGSKRS 389 D LGGGII + + Sbjct: 346 EGDV----CLGGGIIQSTDKP 362 >gi|312793905|ref|YP_004026828.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181045|gb|ADQ41215.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor kristjanssonii 177R1B] Length = 360 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 133/370 (35%), Positives = 203/370 (54%), Gaps = 15/370 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDAR 77 +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ + + R+ SCC+ V DAR Sbjct: 2 KKKVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETEDELIREKSCCSLTAVDDAR 61 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV +++ +YVF+ ++ F+ VI F Y G TP PC+ CNR +KF L LG Sbjct: 62 RVAHILDIPYYVFNMKDDFKKEVINYFVDEYIKGRTPNPCIMCNRKIKFELFLKKAMVLG 121 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D +ATGHY + D R ++ R E+DQ+Y L+ TQ+ L FPLG K Sbjct: 122 MDYIATGHYA---IIEYDKSLCRYLLKRSKAREKDQTYVLYNMTQEMLSKTLFPLGRFSK 178 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + VR LA + L +A K DSQ+ICF+ Y +++ GI EG V +G ILG+ Sbjct: 179 DEVRKLAEKFKLPVARKPDSQEICFIPDNDYGSFIEKET-GIKDEGIYVDTDGNILGKSK 237 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 NYTIGQR+GLG++ G+ ++VV + ++V++G + + ++N++ Sbjct: 238 AYYNYTIGQRKGLGISTGKRMYVVDIKPEENKVVLGEEGKIFSDGLIAYDLNFI----PF 293 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 D + + KIR + + ++ V V F + + + GQ+ VFY+ D Sbjct: 294 DKLESELEVTAKIRYTAKEAKARIIPAQNNKVLVKFYEKQRAITPGQSVVFYSGDI---- 349 Query: 377 VLGGGIISGS 386 V+GGGII + Sbjct: 350 VVGGGIIEKA 359 >gi|42560982|ref|NP_975433.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|81400641|sp|Q6MTG1|MNMA_MYCMS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|42492479|emb|CAE77075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320545|gb|ADK69188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 375 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 120/383 (31%), Positives = 188/383 (49%), Gaps = 23/383 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72 +V+V +SGGVDSSV LL GY+V G+ ++ ++S + G+ C QD Sbjct: 2 KQKVIVGLSGGVDSSVACYLLLEQGYEVEGLFMRNWDSATNNDILGNRNINDDICPQEQD 61 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DA+ V D +N+ Y D+ + + + V F Y TP P + CN+ +KF L+ Sbjct: 62 YLDAKAVADKLNIKLYRVDFIKEYWDYVFSYFIEEYKKARTPNPDILCNKYIKFDKFLNY 121 Query: 133 T-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 QL AD +A GHY + + + + + D +DQ+YFL Q+QL FP Sbjct: 122 AINQLNADYIAMGHYAKVEFNKTTN---QYELIKASDTNKDQTYFLSQLNQKQLSKTLFP 178 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NG 250 L ++ KE VR +A + L A+K DS ICF+ + + + ++ GDIV + Sbjct: 179 LANLTKEQVRKIALKQNLITANKKDSTGICFIGERSFTNFLQNYIPN--QTGDIVDIKTN 236 Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLR 306 ++LG+H G++ YTIGQR+G+ + M EP +V D + + V + L + Sbjct: 237 KVLGQHIGVMYYTIGQRKGINLSGMSEPYYVADKDVKKNILYVCSTSDQSYLHSTSCLVN 296 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQAC 365 +INW+ D ++ F+C K R Q V V++ DD V F+K + GQ Sbjct: 297 DINWILDISKYVDDINQFECQAKFRYRQIDNKVVVKKIDDNNYQVIFKKPLKAITIGQQA 356 Query: 366 VFYTSDSNEARVLGGGIISGSKR 388 VFY +D LGG +I + Sbjct: 357 VFYLNDI----CLGGAVIDKVIK 375 >gi|270156742|ref|ZP_06185399.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Legionella longbeachae D-4968] gi|289164811|ref|YP_003454949.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Legionella longbeachae NSW150] gi|269988767|gb|EEZ95021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Legionella longbeachae D-4968] gi|288857984|emb|CBJ11844.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Legionella longbeachae NSW150] Length = 361 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 122/376 (32%), Positives = 191/376 (50%), Gaps = 27/376 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++ MSGGVDSSV A LL+ GY V G+ ++ + + G C A QD+ DA+ VC+ Sbjct: 4 KVIIGMSGGVDSSVAAWLLQETGYQVEGLFMKNWEQDD---KDGFCPAAQDLADAQAVCN 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + ++ + + V F S Y G TP P V CN+ +KF L LGAD + Sbjct: 61 QLRIPLHTTNFSKEYWQNVFTYFLSEYEKGRTPNPDVLCNKEIKFKAFLDHALTLGADYI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY ++ + GD G + + D ++DQ+YFL A + L FP+GD K +R Sbjct: 121 ATGHYAKN-VIDGDTG----FLFKAKDRDKDQTYFLHAVDPKALGKTLFPIGDYTKTEIR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 + A+++GL K DS ICF+ + ++ ++ +A G+I + G++LG+H+G++ Sbjct: 176 EFAQKLGLVTHAKKDSTGICFIGEKRFKSFLQEFI--LARPGEIKNTEGKVLGKHDGLMF 233 Query: 262 YTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313 YTIGQR+GLG+ +P +VV D +++ + V L H + I+WL D Sbjct: 234 YTIGQRQGLGIGGLQNTSDDPWYVVDKDISTNTLYVAQGSQHPMLYAHGLVCGPIHWLAD 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDS 372 + C+ K R Q + D + YV F + V GQ VFY + Sbjct: 294 CKDRLPLT----CYAKTRYRQAEQGCMISPEDGNQHYVMFSNPQRAVTPGQYIVFYDKN- 348 Query: 373 NEARVLGGGIISGSKR 388 + LGG I R Sbjct: 349 ---QCLGGATIEHIIR 361 >gi|325134641|gb|EGC57281.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis M13399] gi|325144816|gb|EGC67105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis M01-240013] gi|325205709|gb|ADZ01162.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis M04-240196] Length = 367 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 121/381 (31%), Positives = 186/381 (48%), Gaps = 24/381 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + C QD Sbjct: 1 MNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DA V D I + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 58 FDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 GAD +ATGHY R + G + + +D +DQSYFL+ QL FPLG Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ + Sbjct: 173 GLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G H G++ YT+GQR+GLG+ GEP FV D + +IV L + + +++ Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 + L E + C K R P ++ +++ + F++ + V GQ+ V Y Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELRYLDEETAELVFDEPQWAVTPGQSAVLY 345 Query: 369 TSDSNEARVLGGGIISGSKRS 389 D LGGGII + + Sbjct: 346 DGDI----CLGGGIIQTTDKP 362 >gi|312877398|ref|ZP_07737363.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor lactoaceticus 6A] gi|311795872|gb|EFR12236.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor lactoaceticus 6A] Length = 360 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 132/370 (35%), Positives = 203/370 (54%), Gaps = 15/370 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDAR 77 +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ + + R+ SCC+ V DAR Sbjct: 2 KKKVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQTETEDELIREKSCCSLTAVDDAR 61 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV +++ +YVF+ ++ F+ VI F Y G TP PC+ CNR +KF L LG Sbjct: 62 RVAHILDIPYYVFNMKDDFKKEVINYFVDEYIKGRTPNPCIMCNRKIKFELFLKKAMVLG 121 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D +ATGHY + D R ++ R E+DQ+Y L+ TQ+ L FPLG K Sbjct: 122 MDYIATGHYA---IIEYDKSLCRYLLKRSKAREKDQTYVLYNMTQEMLSKTLFPLGRFSK 178 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + VR LA + L +A K DSQ+ICF+ Y +++ GI EG V G ILG+ Sbjct: 179 DEVRKLAEKFKLPVARKPDSQEICFIPDNDYGSFIEKET-GIKDEGIYVDTEGNILGKSK 237 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 NYTIGQR+GLG++ G+ ++VV + ++V++G + + + ++N++ Sbjct: 238 AYYNYTIGQRKGLGISTGKRMYVVDIKPEENKVVLGEEDKIFSDGLIAYDLNFI----PF 293 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 D + + K+R + + ++ V V F + + + GQ+ VFY+ D Sbjct: 294 DKLESELEVTAKVRYTAKEAKARIIPAQNNKVLVKFCEKQRAITPGQSVVFYSGDI---- 349 Query: 377 VLGGGIISGS 386 V+GGGII + Sbjct: 350 VVGGGIIEKA 359 >gi|121607299|ref|YP_995106.1| tRNA-specific 2-thiouridylase MnmA [Verminephrobacter eiseniae EF01-2] gi|166991125|sp|A1WEN1|MNMA_VEREI RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|121551939|gb|ABM56088.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Verminephrobacter eiseniae EF01-2] Length = 370 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 120/388 (30%), Positives = 180/388 (46%), Gaps = 34/388 (8%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + +PK RVVV +SGGVDS+V A LL++ G++V+G+ ++ + G C +G D Sbjct: 1 MTASPKQ-RVVVGLSGGVDSAVTAYLLRQQGHEVVGIFMKNWEDDDDG---GYCPSGTDF 56 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA V D I + ++ ++ V F Y AG TP P V CN +KF L Sbjct: 57 VDAAAVADVIGIEIEHVNFAADYKERVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHA 116 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +LGA+ +ATGHY R R + + D +DQSYFL Q+QL FPLG Sbjct: 117 LRLGAEKIATGHYAGVRRNPA---SGRFELLKGADPAKDQSYFLHRLDQRQLSRTLFPLG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR LA ++GL A K DS ICF+ + + + + R G I G++L Sbjct: 174 ALRKTEVRRLAEDIGLPNARKKDSTGICFIGERPFREFLNRYIG--PAPGPIEDDRGRVL 231 Query: 254 GRHNGIINYTIGQRRGLGVAM------------GEPLFVVYLDKNSS--RVIVGP-RESL 298 G+H+G+ YT+GQR+GLG+ P FV + ++ RV+ G L Sbjct: 232 GQHSGLSFYTLGQRQGLGIGGLKEQGAQRGGGAHAPWFVARKELATNTLRVVQGHDHPWL 291 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEV 357 + ++ W+ + K R Q G + F + + Sbjct: 292 LSRALEAQDARWICGAAPAPG-----RYAAKTRYRQQDASCTMASAGQAGFRLHFSEEQW 346 Query: 358 GVASGQACVFYTSDSNEARVLGGGIISG 385 V GQ+ V Y + LGGG+I+G Sbjct: 347 AVTPGQSAVLYDGNV----CLGGGVIAG 370 >gi|307293549|ref|ZP_07573393.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sphingobium chlorophenolicum L-1] gi|306879700|gb|EFN10917.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sphingobium chlorophenolicum L-1] Length = 376 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 192/387 (49%), Positives = 241/387 (62%), Gaps = 21/387 (5%) Query: 6 ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65 A L + R+VVAMSGGVDSSVVAAL R G + IGVTLQLY+ A R G Sbjct: 7 APMQPQFQLSEPLNARRIVVAMSGGVDSSVVAALAARTGAETIGVTLQLYDHGAAVGRTG 66 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 SCCAGQD+ DAR V D I ++HYVFDYE RFR +VI FA Y AG TP+PCV CN VK Sbjct: 67 SCCAGQDIRDARAVADRIGIAHYVFDYESRFRESVIADFADEYMAGRTPIPCVKCNMGVK 126 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F+DL + R LGAD LATGHY+R +G + + R D RDQSYFLFATTQ QL Sbjct: 127 FTDLFQIARDLGADCLATGHYVRRV-----EGPQGAELHRAADPARDQSYFLFATTQAQL 181 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 LRFPLG + K VR++A E+GL +A K DSQDICFV G Y +V+++ GDI Sbjct: 182 DYLRFPLGGLPKPQVREIAAELGLSVAMKPDSQDICFVPDGDYAKIVRKLRPDADAGGDI 241 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 VH++G+++G H G+I+YT+GQR+GL + EPL+VV LD + RVIVGP+ +L V Sbjct: 242 VHIDGRLMGTHKGMIHYTVGQRKGLEIGGQAEPLYVVRLDAEARRVIVGPKAALAVSAAR 301 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 L +INWLG K+RS PVP ++ + + F+ E GVA GQA Sbjct: 302 LSDINWLGGDFSGP-------LTAKVRSMAKPVPARLEGD----RLLFDAPEYGVAPGQA 350 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDA 391 V Y D RVLGGG I+ ++ + A Sbjct: 351 AVLYAGD----RVLGGGWIAATEAALA 373 >gi|310816020|ref|YP_003963984.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ketogulonicigenium vulgare Y25] gi|308754755|gb|ADO42684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ketogulonicigenium vulgare Y25] Length = 379 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 196/386 (50%), Positives = 254/386 (65%), Gaps = 14/386 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M + A LNSL + K + RVVVAMSGGVDSSVVAA LKR+GYDV+GVTLQLY+ A Sbjct: 1 MPLDPA--LNSLGIAKPVAETRVVVAMSGGVDSSVVAAQLKREGYDVVGVTLQLYDHGAA 58 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +KG+CCAG+D++DARRV + + HYV DYE FR AVI FA SY AG TP+PC+ C Sbjct: 59 LAKKGACCAGRDIHDARRVAEEMGFPHYVLDYENTFREAVIDEFADSYLAGATPVPCIRC 118 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N VKF DLL + L AD +ATGHYI+ ++ G + D RDQSYFLF+T Sbjct: 119 NERVKFKDLLQTAKDLDADCMATGHYIQRKM-----GDYAPELHSAADPNRDQSYFLFST 173 Query: 181 TQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI 239 T +QL LRFPLG +K K R LA E GL +ADK DSQDICFV G Y V++++ Sbjct: 174 TPEQLAYLRFPLGHLKSKAETRALAAEFGLGVADKPDSQDICFVPDGNYAAVIEKLRPDA 233 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQ-RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL 298 A G+IV +NG++LG+H G+I+YT+GQ R +GEP++VV LD ++ RVIVGP+ +L Sbjct: 234 AQPGEIVDMNGKVLGQHPGVIHYTVGQRRGLGVGGLGEPVYVVRLDVDTRRVIVGPKSAL 293 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEV 357 R+ LRE+NWLGDG F D + V++RSS+ P ++ + V+ E Sbjct: 294 ATRRVPLREVNWLGDGAFTDMAERHIR--VRVRSSRPPAEAILRPLSATTAEVELLTPEE 351 Query: 358 GVASGQACVFYTSDSNEARVLGGGII 383 GV+ GQACVFY ++ +RVLGGG I Sbjct: 352 GVSIGQACVFY--ETEGSRVLGGGWI 375 >gi|262276991|ref|ZP_06054784.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha proteobacterium HIMB114] gi|262224094|gb|EEY74553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [alpha proteobacterium HIMB114] Length = 377 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 193/388 (49%), Positives = 260/388 (67%), Gaps = 13/388 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 + +++ T N L DK+ +VVVAMSGGVDSSVVAALLK+DGYDVIG+TLQL++ K Sbjct: 3 LAITDITEKNILGFDKDKSQTKVVVAMSGGVDSSVVAALLKKDGYDVIGITLQLFDYGKI 62 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 K KG+CCAG+D+YDA++VCD + + H VF+YE F+ VI FA SY GETP+PCVDC Sbjct: 63 GKTKGTCCAGKDIYDAKKVCDQLEIKHEVFNYESIFKEEVIEKFADSYIKGETPIPCVDC 122 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N+TVKF DL + L AD LATGHY++ +M RP DL RDQSYFLF T Sbjct: 123 NQTVKFRDLFKSAKNLDADALATGHYVKRIF------NHSAMMYRPEDLNRDQSYFLFNT 176 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 TQ+QL LRFPL + K RD+AR++ L +A+K DSQDICFV G Y +V+++ Sbjct: 177 TQEQLDYLRFPLASLPKTKTRDIARDLKLQVANKPDSQDICFVPNGNYKTIVEKLRPESF 236 Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300 +EG+IV G+ILG+HNGI N+TIGQR+G+ V+ +P FV+ +D ++V++G RE L V Sbjct: 237 VEGEIVDTKGKILGKHNGIANFTIGQRKGIKVSSIDPFFVIRIDPKKNQVVIGSREELSV 296 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360 IYL++IN+L D ++ + F FVK+RS+ + + V +D+G V E GV+ Sbjct: 297 QTIYLKDINYLCD---KEQLNGDF--FVKVRSTGNLLECNV--SDNGHKVTLLSGETGVS 349 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKR 388 GQACVFY D RV GGG I +++ Sbjct: 350 PGQACVFYKKDEFGMRVYGGGWIDRTEK 377 >gi|309790491|ref|ZP_07685051.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oscillochloris trichoides DG6] gi|308227478|gb|EFO81146.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oscillochloris trichoides DG6] Length = 359 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 138/364 (37%), Positives = 207/364 (56%), Gaps = 13/364 (3%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++VAMSGGVDSS+ AALL G+ V+GVT+ L++ + CC+ + ARRVC+ Sbjct: 4 IMVAMSGGVDSSLTAALLHEQGHTVVGVTMHLWDGDDDHLAESLCCSLEMTASARRVCNQ 63 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + +YVF+Y+ FR AV+ F +Y+ G TP PC+ CNR +KF LL+ QLG D +A Sbjct: 64 LGIPYYVFNYQREFRRAVVDAFVHAYSHGYTPNPCIACNREIKFRALLARANQLGYDYVA 123 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY+R R+ + + + R D +DQSY L+ Q +L L FPLG+ +K VR Sbjct: 124 TGHYVRRRVTDAN----QYKLLRAHDHGKDQSYVLYMLGQTELARLLFPLGEYQKSEVRA 179 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A GL+ AD+ +SQDICFV G Y +++ + G IV +G+ +G+H G+ Y Sbjct: 180 MATARGLESADRPESQDICFVPDGDYRQLLRTEAPASLVPGPIVDQHGREVGQHQGLPLY 239 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQRRGLGV PL+V LD + +IVGP +L H ++ + + E Sbjct: 240 TIGQRRGLGVYAATPLYVTGLDTARNTLIVGPAAALLRHEFWVEAASSVAATWPESP--- 296 Query: 323 GFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 F C V++R+ P V + + +++ + ++ GQA V Y + RV+GGG Sbjct: 297 -FTCEVQVRAHGATAPATVTAHPGERLHIQLQSPIRAISPGQAAVLYAGE----RVIGGG 351 Query: 382 IISG 385 I+ Sbjct: 352 TIAR 355 >gi|218460955|ref|ZP_03501046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhizobium etli Kim 5] Length = 353 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 207/337 (61%), Positives = 252/337 (74%), Gaps = 4/337 (1%) Query: 6 ATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65 A LN+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+ A R G Sbjct: 7 APPLNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAG 66 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 SCCAGQD+ DARRVC+T+ + HYV DYE+RFR VI PFA SY AGETP+PCV CN+TVK Sbjct: 67 SCCAGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVK 126 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F+DLL+ ++LGAD LATGHYIRSR + RR + RP D +RDQSYFLFATTQQQ+ Sbjct: 127 FADLLATAKELGADALATGHYIRSRPNPSPEHPGRRALFRPADADRDQSYFLFATTQQQI 186 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 LRFPLG + K R LA EMGL +A K+DSQDICFV QGKY D++ ++ AL G+I Sbjct: 187 DYLRFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEI 246 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 VHL+G++LG H GI+++TIGQRRG+G+A GEPL+VVYLD S RVIVGP+E+LE HR+YL Sbjct: 247 VHLDGRVLGSHEGILHFTIGQRRGIGIATGEPLYVVYLDARSRRVIVGPKEALETHRVYL 306 Query: 306 REINWLGDGLFEDAVV-DGFKCFVKI-R--SSQDPVP 338 R++NWLGD +A GF C K R P Sbjct: 307 RDVNWLGDETLAEAASGGGFACTPKSDRHGHRHPPCC 343 >gi|257437854|ref|ZP_05613609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Faecalibacterium prausnitzii A2-165] gi|257199514|gb|EEU97798.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Faecalibacterium prausnitzii A2-165] Length = 371 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 135/375 (36%), Positives = 197/375 (52%), Gaps = 13/375 (3%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDV 73 +N K ++AMSGGVDSSV A L+++ GYD G+T++L N +CC+ +D+ Sbjct: 8 AQNTKRPGALIAMSGGVDSSVAAWLMQQAGYDCTGITMRLTRNETLGQSGFHTCCSEKDI 67 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA V +++ + V D+ FR +I F Y G TP PC+DCNR +KF LL Sbjct: 68 EDAAEVAFAMDIPYEVLDFTADFREKIIEKFIRVYEMGGTPNPCIDCNRYMKFDHLLRWA 127 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 G + + TGHY R D+ R ++ + +D +DQSY L+ TQ+QL +R PLG Sbjct: 128 ESHGMEYVVTGHYARVE---QDEATGRWLLKKGLDEGKDQSYVLYNLTQEQLAHVRLPLG 184 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 + K VR++A + A K DSQDICFV G Y ++ GD + NG+ + Sbjct: 185 GLHKAEVREIAEKQHFINARKHDSQDICFVPDGDYARFMEDFTGKHYPAGDFLDENGKKV 244 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G HNG + YTIGQR+GLG+AMG P++V D ++ V VGP E+L +Y E+NW+ Sbjct: 245 GTHNGAVRYTIGQRKGLGLAMGAPVYVCAKDMQANTVTVGPEENLFDRIVYADEVNWIAI 304 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 + + + R Q V +G ++F++ + GQA V Y D Sbjct: 305 ----PELTAPLRVTARTRYHQTEQAATVYPAGEGQFRLEFDQPQRAPTPGQAVVLYQGDV 360 Query: 373 NEARVLGGGIISGSK 387 VLGGG I + Sbjct: 361 ----VLGGGTIVAVE 371 >gi|322434612|ref|YP_004216824.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidobacterium sp. MP5ACTX9] gi|321162339|gb|ADW68044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidobacterium sp. MP5ACTX9] Length = 379 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 155/389 (39%), Positives = 221/389 (56%), Gaps = 31/389 (7%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-------SRKASKRKG 65 DL + P+ + VAMSGGVDSS VAALL GYD+IG+TLQL+N +G Sbjct: 3 DLSQIPE--TIAVAMSGGVDSSAVAALLHEQGYDLIGLTLQLWNQRRLAGHEGMPESVQG 60 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 CC+ DVYDARRV + I + +Y+ + +ERF V+ PF S Y AG TP+PC CN +K Sbjct: 61 RCCSIDDVYDARRVAEKIGIPYYLVNQQERFEADVVKPFVSEYLAGRTPIPCTLCNNHLK 120 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F LL RQ+GA +ATGHY R+R D+ R I+ RP D +DQ+YFLF TQ QL Sbjct: 121 FDQLLLTARQVGATKIATGHYARNRF---DEATGRWILSRPADRSKDQTYFLFGLTQDQL 177 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE--- 242 FPLG+M+K +VR +A E GLD+A K DSQ+ICF+ G Y ++ E Sbjct: 178 AHTLFPLGEMQKPAVRVMATEAGLDVAAKPDSQEICFIPGGDYQTFLRAYLDEQGEELPD 237 Query: 243 --GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300 G++V +G+++GRH GI N+T+GQR+GLG+ PL+V+ + +S +V VG L Sbjct: 238 SSGELVTSSGEVVGRHTGIHNFTVGQRKGLGLTSANPLYVLAIHPDSHQVQVGSDAELMT 297 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-----RNDDGVYV-DFEK 354 + +NW+ + + + K+R +P P + + D + + F++ Sbjct: 298 RELRANRLNWISI----PEITEPIRVLAKVRHRHEPQPATLSSGGIGPDGDPIAIAIFDE 353 Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGII 383 + + GQA +FY D V+GGG I Sbjct: 354 PQRAITPGQAAIFYREDD----VVGGGWI 378 >gi|269926148|ref|YP_003322771.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Thermobaculum terrenum ATCC BAA-798] gi|269789808|gb|ACZ41949.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Thermobaculum terrenum ATCC BAA-798] Length = 355 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 145/363 (39%), Positives = 199/363 (54%), Gaps = 19/363 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK--GSCCAGQDVYDARRVC 80 VVVAMSGGVDSSV AA+L+ GYDVIGV L+LY+ + CC + DA VC Sbjct: 4 VVVAMSGGVDSSVAAAMLRDQGYDVIGVNLRLYSKEDSQAYSLNKQCCTLDSMRDAEAVC 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + Y + E F V+ F S Y G+TP PC+ CN +KF L LGAD Sbjct: 64 RKLGIPFYALNMEREFTRDVVDYFVSEYLQGKTPNPCLACNAHIKFHHLFERAMALGADY 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R + + +D +DQSY L+ +Q++L P+G+ K Sbjct: 124 IATGHYARLRR-----TESGVKLLTGVDAAKDQSYTLYMLSQRELERTLLPIGEQTKAET 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R+LAR+ GL A+K +SQDICF+ G Y V+R+ G IV +G+ LG H+G+ Sbjct: 179 RELARKYGLVTANKPESQDICFIPSGDYRAFVRRLAPHAESPGPIVDTSGRQLGVHHGVA 238 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQR+GLG+ +G+P++VV LD + V+VG +E L I L ++N++ Sbjct: 239 FYTIGQRKGLGITVGKPMYVVRLDPEKNMVVVGTKEELSSREIRLCDVNYIDGS----PR 294 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVG-VASGQACVFYTSDSNEARVL 378 + F+C VK+R +P V DD V V+ G VA GQA VFY + VL Sbjct: 295 TEAFECEVKLRYRGASIPAIVHPEDDRSVRVELLGP--GNVAPGQAVVFYQGE----EVL 348 Query: 379 GGG 381 GGG Sbjct: 349 GGG 351 >gi|299531933|ref|ZP_07045333.1| tRNA-specific 2-thiouridylase MnmA [Comamonas testosteroni S44] gi|298720108|gb|EFI61065.1| tRNA-specific 2-thiouridylase MnmA [Comamonas testosteroni S44] Length = 376 Score = 445 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 125/388 (32%), Positives = 189/388 (48%), Gaps = 32/388 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVVV +SGGVDS+V A LLK+ G++V+G+ ++ + S+ C + D DA V Sbjct: 4 KQRVVVGLSGGVDSAVTAYLLKKQGHEVVGIFMKNWEDDDDSE---YCSSNIDFVDAAAV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + ++ +++ V F Y AG TP P V CN +KF L +LGA+ Sbjct: 61 ADVIGIEIEHVNFAADYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAE 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R + + + + +D +DQSYFL Q QL FP+G++ K Sbjct: 121 KIATGHYARVR---QNPSTQLFELLKGLDNSKDQSYFLHRLNQAQLSKAMFPVGELHKTE 177 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E+GL A K DS ICF+ + + D + R + G I+ + LG+H G+ Sbjct: 178 VRRIAEEIGLPNARKKDSTGICFIGERPFRDFLNRYISKE--PGLILDDRNRKLGKHVGL 235 Query: 260 INYTIGQRRGLGVAM------------GEPLFVVYLDKNSS--RVIVGP-RESLEVHRIY 304 YT+GQR GLG+ P FV + + + RV+ G L+ H + Sbjct: 236 SFYTLGQRSGLGIGGVKEKGAARGAGDHAPWFVARKEMDKNILRVVQGHDHPLLQSHALL 295 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQ 363 +++W+ A +G K R Q P + Q + G +DF +++ V GQ Sbjct: 296 ADQVSWVAG----QAPAEGKAYGSKTRYRQPDSPALISQATEAGFRLDFPEAQWAVTPGQ 351 Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDA 391 + V Y D LGGGII+ + A Sbjct: 352 SAVLYDGDV----CLGGGIIAQVDPAAA 375 >gi|312127260|ref|YP_003992134.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor hydrothermalis 108] gi|311777279|gb|ADQ06765.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor hydrothermalis 108] Length = 360 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 134/370 (36%), Positives = 204/370 (55%), Gaps = 15/370 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDAR 77 +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ S + SCC+ V DAR Sbjct: 2 KKKVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQSGCGEELITGKSCCSLYAVDDAR 61 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV + +++ +YVF+ ++ F+ VI F Y G TP PC+ CNR +KF L +G Sbjct: 62 RVANILDIPYYVFNMKDDFKKMVIDYFVDEYIKGRTPNPCIMCNRKIKFEFFLKKAITIG 121 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D +ATGHY + D+ R ++ R E+DQ+Y L+ TQ+ L FPLG K Sbjct: 122 MDYIATGHYA---IVEYDNSLNRYLLKRSKAKEKDQTYVLYNMTQEMLSKTLFPLGRFSK 178 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + VR LA + L +A+K DSQ+ICF+ Y +++ GI +G V G ILGR Sbjct: 179 DEVRRLAEKFKLPVANKPDSQEICFIPDNNYGKFIEKET-GIKEDGIYVDTEGNILGRSK 237 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 NYTIGQR+GLG++ G+ ++VV + ++VI+G + + + ++N++ Sbjct: 238 TYYNYTIGQRKGLGISTGKRMYVVAIKPEENKVILGEEDKIYADNLVATDLNFI----PF 293 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 D + + KIR + + D+ V V F + + + GQ+ VFY+ D Sbjct: 294 DKLESELEVTAKIRYTAKEAKARIIPIEDNKVLVKFYEKQRAITPGQSVVFYSGDI---- 349 Query: 377 VLGGGIISGS 386 V+GGGII + Sbjct: 350 VVGGGIIEKA 359 >gi|304439506|ref|ZP_07399414.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372014|gb|EFM25612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 355 Score = 444 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 127/373 (34%), Positives = 184/373 (49%), Gaps = 28/373 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K VV+ +SGGVDSSV A LLK GY+VIGV ++ ++ C A D D + Sbjct: 4 KKRTVVLGISGGVDSSVAAYLLKEQGYNVIGVFMKNWDENDEE-----CTATDDYLDVVK 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + +++ +Y ++E+ + + V F + Y G TP P V CN+ +KF L +LGA Sbjct: 59 VANALDIKYYTVNFEKEYWDTVFTYFLNEYKKGRTPNPDVMCNQNIKFKAFLDFALKLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +A GHY R + G + R +D +DQSYFL ++ L FP+GD+KKE Sbjct: 119 DYIAMGHYARVKHENG-----HSYLLRGVDENKDQSYFLSRVKEEALKKTIFPIGDIKKE 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A E+ L A K DS +CF+ + + + + G IV G +LG H+G Sbjct: 174 RVREIAEELNLATAKKKDSTGVCFIGERDFNKFLDKFL--FTKPGKIVDEAGNVLGEHSG 231 Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +++YTIGQR+ GV GEP FV + + +IV L Y+ E ++ Sbjct: 232 LMHYTIGQRKGIGIGGVGTGEPFFVADKNLEKNELIVAQGVDNPILYRDEFYVEEPFFIN 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371 C KIR V + V + DD + V EK GV GQ VFY+ + Sbjct: 292 G-----TPDYPLNCTGKIRYRAPDVGMVVTKIDDETLKVKLEKPLKGVTPGQIAVFYSGE 346 Query: 372 SNEARVLGGGIIS 384 LG GII Sbjct: 347 I----CLGSGIIK 355 >gi|241761211|ref|ZP_04759299.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|283856328|ref|YP_162504.2| tRNA-specific 2-thiouridylase MnmA [Zymomonas mobilis subsp. mobilis ZM4] gi|292495018|sp|Q5NPG7|MNMA_ZYMMO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|241374118|gb|EER63615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|283775325|gb|AAV89393.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Zymomonas mobilis subsp. mobilis ZM4] Length = 370 Score = 444 bits (1144), Expect = e-123, Method: Composition-based stats. Identities = 189/379 (49%), Positives = 247/379 (65%), Gaps = 21/379 (5%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 +DK R+VVAMSGGVDSSVVAAL K G + IG+TLQLY+ A RKGSCCAG+ Sbjct: 5 FQIDKPKSAQRIVVAMSGGVDSSVVAALAKATGAETIGITLQLYDHGAAVGRKGSCCAGK 64 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DAR V + I + HYVFDYE F+ +VI F S Y AG TP+PC+ CN+ VKF+DLL+ Sbjct: 65 DIRDARAVAEKIGIPHYVFDYENNFKESVIDDFVSEYVAGRTPVPCIRCNQGVKFTDLLN 124 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 V R+LGAD LATGHY+R + R M R +D RDQSYFLFATT++QL LRFP Sbjct: 125 VARELGADCLATGHYVRRLVNND-----RVEMHRALDPARDQSYFLFATTKEQLDYLRFP 179 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG + K VR++A E+GL +A K+DSQDICFV G Y +V+ GDIV + G+ Sbjct: 180 LGGLPKPKVREMAAELGLSVAMKADSQDICFVPDGDYARIVEEKCPESGQGGDIVDMQGR 239 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 +LG+H+G+I++T+GQRRGL + EPL+V+ LD +++VGPR++L V + ++E+NW Sbjct: 240 VLGKHSGLIHFTVGQRRGLEIGGQKEPLYVIRLDPAKKQLVVGPRQALAVAKAEIKEVNW 299 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 L DG + VKIRS+ PV DG + FEK E GV+ GQA VFY Sbjct: 300 LVDGFDREM-------QVKIRSAAKPVSARF----DGKELVFEKPEYGVSPGQAAVFYDG 348 Query: 371 DSNEARVLGGGIISGSKRS 389 D +VLGGG I + + Sbjct: 349 D----QVLGGGWIKETTPA 363 >gi|77463173|ref|YP_352677.1| tRNA-specific 2-thiouridylase MnmA [Rhodobacter sphaeroides 2.4.1] gi|123592152|sp|Q3J358|MNMA_RHOS4 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|77387591|gb|ABA78776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacter sphaeroides 2.4.1] Length = 379 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 188/379 (49%), Positives = 243/379 (64%), Gaps = 12/379 (3%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 LNSL K P RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A +KG+C Sbjct: 5 PLNSLGFAKPPAVTRVVVAMSGGVDSSVVAAELAAEGYDVVGVTLQLYDHGAALAKKGAC 64 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 CAG+D++DARRV +T+ HYV DYE FR AVI FA +Y AG TP+PC+ CN VKF Sbjct: 65 CAGRDIHDARRVAETMGFPHYVLDYENTFREAVIDEFADAYLAGATPVPCIRCNERVKFK 124 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL + L AD +ATGHYI+ ++ G + D RDQSYFLF+TT +QL Sbjct: 125 DLLQTAKDLDADCMATGHYIQRKM-----GPAGPELHSAADPARDQSYFLFSTTPEQLAF 179 Query: 188 LRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 LRFPLG + K R LA GL +ADK DSQDICFV G Y +V++++ G A G+IV Sbjct: 180 LRFPLGHLASKAETRALAARHGLPVADKPDSQDICFVPNGNYAEVIQKLRPGAADPGEIV 239 Query: 247 HLNGQILGRHNGIINYTIGQ-RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 L+G++LG H G+I+YTIGQ R +G+PL+VV LD +VIVGP+E+L + + Sbjct: 240 DLSGRVLGEHRGVIHYTIGQRRGLGIGGLGDPLYVVRLDPERRQVIVGPKEALSTRIVPV 299 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQA 364 REINWLGD ++ K+RS++ P ++ +D V+ E GV+ GQA Sbjct: 300 REINWLGDAPLTSR--SEWQVMAKVRSTRAPREAVIRPLSDTEAEVELIAPEDGVSPGQA 357 Query: 365 CVFYTSDSNEARVLGGGII 383 CVFY ++R+LGGG I Sbjct: 358 CVFYA--PGDSRILGGGWI 374 >gi|302382556|ref|YP_003818379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brevundimonas subvibrioides ATCC 15264] gi|302193184|gb|ADL00756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brevundimonas subvibrioides ATCC 15264] Length = 407 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 196/370 (52%), Positives = 247/370 (66%), Gaps = 6/370 (1%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P RVV AMSGGVDS+VVAALL + GYDV+GVTLQLY+ A K+KG+CCAGQD++DAR Sbjct: 37 PVGSRVVAAMSGGVDSTVVAALLHKAGYDVVGVTLQLYDHGAALKKKGACCAGQDIHDAR 96 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + + + HYV DYE RFR+AVI FA SY G+TP+PC+ CN+TVKF DLL V R LG Sbjct: 97 LAAEMLGIPHYVLDYESRFRDAVIDQFADSYLKGQTPVPCIRCNQTVKFRDLLDVARDLG 156 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A +ATGHY+ + R M + +D RDQSYFLFATT+ QL LRFPL ++K Sbjct: 157 AAAMATGHYVGRAVAAD----GRAQMRKAIDPSRDQSYFLFATTRDQLDYLRFPLAGLEK 212 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 +VR +A E+GL IA K DSQDICFV G Y ++ R+ G+IVH++G++LG H Sbjct: 213 PAVRGVAAELGLRIAAKPDSQDICFVPSGDYRTLIDRLRPQGREAGEIVHMDGRVLGHHA 272 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD-GLF 316 GI +YTIGQRRGL VA+GEPLFV LD ++ RVIVGPRE+L + L E NWLGD Sbjct: 273 GITDYTIGQRRGLNVAVGEPLFVTRLDPDTRRVIVGPREALLTASLTLDETNWLGDEASI 332 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 E A ++RS++ P P + D G+ V FE E GVA GQAC Y S+ R Sbjct: 333 EAAAAANTPVLARVRSTRPPSPARLTLADSGISVVFETGEEGVAPGQACALYYP-SDPDR 391 Query: 377 VLGGGIISGS 386 +LGGG I+ + Sbjct: 392 LLGGGFIAST 401 >gi|325919552|ref|ZP_08181566.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xanthomonas gardneri ATCC 19865] gi|325549961|gb|EGD20801.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xanthomonas gardneri ATCC 19865] Length = 378 Score = 444 bits (1143), Expect = e-122, Method: Composition-based stats. Identities = 125/392 (31%), Positives = 182/392 (46%), Gaps = 33/392 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R++V +SGGVDSSV A L + G + G+ +Q + A G C A D DA VC Sbjct: 5 RIIVGVSGGVDSSVAAWRLAQQGESIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + + V F + YAAG TP P V CNR VKF L + LGA+ + Sbjct: 61 VLGIPFHFRDFSNEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R G R + R D +DQSYFL Q QL FP+GD++K ++R Sbjct: 121 ATGHYARVAHSGG-----RWRLLRGADRGKDQSYFLHQLGQTQLAATLFPIGDLEKSTLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A++ L K DS ICF+ + + + + R A G+I GQ + H G+ Sbjct: 176 RIAQDANLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313 +T+GQR GL + P +VV D S+ + V L+ H + + +W+ Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSHWLQSEQPHWVTG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 F C + R Q P V+ DDG V V FE+ + V GQ+ V Y + Sbjct: 294 A----PPARSFSCTAQTRYRQPDEPCTVEVRDDGSVQVRFERPQRAVTPGQSLVLYDGE- 348 Query: 373 NEARVLGGGIISGSKRSDAVEESLLSVIGDEF 404 LGG +I+ + + G F Sbjct: 349 ---ECLGGAVIAATD-----APMERQLAGSSF 372 >gi|126462045|ref|YP_001043159.1| tRNA-specific 2-thiouridylase MnmA [Rhodobacter sphaeroides ATCC 17029] gi|205816923|sp|A3PJ71|MNMA_RHOS1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|126103709|gb|ABN76387.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacter sphaeroides ATCC 17029] Length = 379 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 188/379 (49%), Positives = 243/379 (64%), Gaps = 12/379 (3%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 LNSL K P RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A +KG+C Sbjct: 5 PLNSLGFAKPPAATRVVVAMSGGVDSSVVAAELAAEGYDVVGVTLQLYDHGAALAKKGAC 64 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 CAG+D++DARRV +T+ HYV DYE FR AVI FA +Y AG TP+PC+ CN VKF Sbjct: 65 CAGRDIHDARRVAETMGFPHYVLDYENTFREAVIDEFADAYLAGATPVPCIRCNERVKFK 124 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL + L AD +ATGHYI+ ++ G + D RDQSYFLF+TT +QL Sbjct: 125 DLLQTAKDLDADCMATGHYIQRKM-----GPAGPELHCAADAARDQSYFLFSTTPEQLAF 179 Query: 188 LRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 LRFPLG + K R LA GL +ADK DSQDICFV G Y +V++++ G A G+IV Sbjct: 180 LRFPLGHLASKAETRALAARHGLPVADKPDSQDICFVPNGNYAEVIQKLRPGAADPGEIV 239 Query: 247 HLNGQILGRHNGIINYTIGQ-RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 L+G++LG H G+I+YTIGQ R +G+PL+VV LD +VIVGP+E+L + + Sbjct: 240 DLSGRVLGEHRGVIHYTIGQRRGLGIGGLGDPLYVVRLDPERRQVIVGPKEALSTRIVPV 299 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQA 364 REINWLGD ++ K+RS++ P ++ +D V+ E GV+ GQA Sbjct: 300 REINWLGDAPLTSR--SEWQVMAKVRSTRAPREAVIRPLSDTEAEVELIAPEDGVSPGQA 357 Query: 365 CVFYTSDSNEARVLGGGII 383 CVFY ++R+LGGG I Sbjct: 358 CVFYA--PGDSRILGGGWI 374 >gi|307691533|ref|ZP_07633770.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ruminococcaceae bacterium D16] Length = 361 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 136/364 (37%), Positives = 196/364 (53%), Gaps = 14/364 (3%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK-ASKRKGSCCAGQDVYDARRVCD 81 + AMSGGVDSS LL++ GYD +G T+ L++ ++ C +DV DA+ V Sbjct: 4 IAAAMSGGVDSSTAVWLLQQAGYDPVGFTMSLFSPDALPPDQRSQCHTARDVADAQAVAQ 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + +SH+ D E F V+ PF +Y G+TP PCV CNR +KF LL +++G +L Sbjct: 64 RLGISHHTLDLSESFCREVMDPFVQAYEQGQTPNPCVLCNRAIKFGALLQAAQEMGCPLL 123 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + D G R ++ + + ++DQSY L+ TQQQL RFPLG + KE +R Sbjct: 124 ATGHYAQVE---QDSGSGRWLLKKALHPDKDQSYVLWTLTQQQLAATRFPLGQLSKEEIR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A E GL A KSDSQDICFV G Y + GD V G +LGRH GII+ Sbjct: 181 AIALEQGLVSARKSDSQDICFVPDGDYASFICHHTGKHYPSGDFVDPQGNVLGRHQGIIH 240 Query: 262 YTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YT+GQRRGLGV+ + L+V L + V +G +L + ++N + + + Sbjct: 241 YTLGQRRGLGVSSNQGRLYVTGLSPQDNTVTLGSNAALLHRSLTAGQLNLIAM----ERL 296 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + K+R P +++ D + F++ + + GQ+ VFY D VLG Sbjct: 297 DQPIQVMAKVRYRMTEQPAILEQTGPDTARLTFQEPQRAITPGQSVVFYQDDV----VLG 352 Query: 380 GGII 383 GGII Sbjct: 353 GGII 356 >gi|323141806|ref|ZP_08076673.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Phascolarctobacterium sp. YIT 12067] gi|322413729|gb|EFY04581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Phascolarctobacterium sp. YIT 12067] Length = 357 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 137/366 (37%), Positives = 207/366 (56%), Gaps = 13/366 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78 + + ++AMSGGVDSSV A ++ Y+ GVT++L+ N + SCC+ DV DAR Sbjct: 2 NKKALIAMSGGVDSSVSALMMLEQDYECTGVTMKLFANEDIGVSKANSCCSIDDVADARS 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V ++ + +YVF++ +RF VI F +Y G TP PC+DCNR +KF L ++LG Sbjct: 62 VATSLGMLYYVFNFADRFERDVIDRFVDAYVNGRTPNPCIDCNRYLKFDQLFVRAQELGC 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGHY + D+ K R ++ + +D +DQSY L+A TQ+QL FPLG + K Sbjct: 122 DYVVTGHYAQISY---DEAKGRYLLRKAVDPLKDQSYVLYALTQEQLAHAMFPLGGLYKT 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR++A + G A K DSQDICF+Q G Y D ++ G+ V G +LGRH G Sbjct: 179 QVREIAEKHGFVNAQKHDSQDICFIQTGTYADFIEARLGRKFNPGNFVDEAGNVLGRHKG 238 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 II+YT+GQR+GLG+A+ +P++V +D ++ VI+ E L + + IN + D Sbjct: 239 IIHYTVGQRKGLGLALPQPMYVKEIDTKNNAVILTTNEGLFTKNVTAKNINLIDC----D 294 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 A+ + + +IR Q V + D D + + F+ + + GQ+ V Y D V Sbjct: 295 AITEPRRVKARIRYHQQEQWATVTQPDADTLQLVFDDPQRAITKGQSVVMYDGDV----V 350 Query: 378 LGGGII 383 +GGG I Sbjct: 351 VGGGTI 356 >gi|124268750|ref|YP_001022754.1| tRNA-specific 2-thiouridylase MnmA [Methylibium petroleiphilum PM1] gi|166234857|sp|A2SLT0|MNMA_METPP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|124261525|gb|ABM96519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylibium petroleiphilum PM1] Length = 396 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 120/408 (29%), Positives = 180/408 (44%), Gaps = 52/408 (12%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + K RVVV +SGGVDS+V A LLK+ G++V+G+ ++ + + C + QD DA Sbjct: 2 SAKKERVVVGLSGGVDSAVSAWLLKQQGHEVVGLFMKNWEDDDDDE---YCSSRQDFLDA 58 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + ++ +R+ V F Y AG TP P V CN +KF L +L Sbjct: 59 ASVADVIGIEIEHVNFAAEYRDRVFAEFLREYEAGRTPNPDVLCNAEIKFKAFLDHALRL 118 Query: 137 GADVLATGHYIRSRLYVG----------------------DDGKRRRIMCRPMDLERDQS 174 GA +ATGHY R R + R + + +D +DQS Sbjct: 119 GAGKIATGHYARVRRAPALPGMPDGPLDESSAGALDRARVREAGGRFELLKGLDASKDQS 178 Query: 175 YFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR 234 YFL +Q QL FP+G++ K VR +A E+ L +A K DS ICF+ + + + + R Sbjct: 179 YFLHRLSQAQLARTLFPVGELPKTEVRRIAAEIRLPVAAKKDSTGICFIGERPFREFLNR 238 Query: 235 INAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM------------GEPLFVVY 282 A G I G+ LG H G+ YT+GQR+G+G+ P FV Sbjct: 239 YLAHA--PGPIKDERGRTLGEHVGLSFYTLGQRKGIGIGGVKERGAARGGADHAPWFVAR 296 Query: 283 LDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339 D+ + + V L+ R+ + +W+ K R Q Sbjct: 297 KDRPHNTLYVVQGHDHPWLQSFRLEADDASWIAGTPPAPGA-----LAAKTRYRQADASC 351 Query: 340 FVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 + DG +DF + V GQ+ V Y + LGGG+I+ + Sbjct: 352 VLAPGADGRFRLDFGVPQWAVTPGQSAVLYDGEV----CLGGGVIAAA 395 >gi|320536235|ref|ZP_08036280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Treponema phagedenis F0421] gi|320146893|gb|EFW38464.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Treponema phagedenis F0421] Length = 359 Score = 444 bits (1142), Expect = e-122, Method: Composition-based stats. Identities = 133/374 (35%), Positives = 203/374 (54%), Gaps = 16/374 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++V +SGGVDS+V A LL G++V GVT+Q+ + + QD+ DAR + Sbjct: 1 MKILVGLSGGVDSAVAAKLLLEQGHEVSGVTMQMISPVGEIIKS----QEQDIADARAIA 56 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +T+ + + D FR ++ FA +Y G TP PC CN+ +KF LL + G D Sbjct: 57 NTLGIDFFTLDLRSAFREEIMNYFAETYKQGLTPNPCFICNKKMKFRRLLDAALERGFDA 116 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + + D R ++ + D ++DQSYFL Q QL + FPLG+ K V Sbjct: 117 IATGHYAQ---IMRDLKTGRYLLLQGSDSKKDQSYFLALLNQFQLAHIMFPLGNYTKPEV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A + DSQDICFV G Y +V+ + EG+ + G+I+G+H G+ Sbjct: 174 RKIAEKAGLISAHRPDSQDICFVPNGDYAKIVEALLPETFTEGNFLDTKGKIIGKHRGLH 233 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +YTIGQRRGL +A GEP++VV D ++ V VG E+L + +N++ + + Sbjct: 234 HYTIGQRRGLALAFGEPVYVVSKDAKTNTVCVGSSENLFASALVAENVNFIAV----EKL 289 Query: 321 VDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + C VK R Q+ +P + +D + V+F + E VA+GQA V Y V Sbjct: 290 TEPIVCTVKTRYRQNEIPARLIPITEDSLRVEFLQPERAVAAGQALVCYKD----GAVFA 345 Query: 380 GGIISGSKRSDAVE 393 GGII+ + + Sbjct: 346 GGIITAVEPWAKPQ 359 >gi|260752750|ref|YP_003225643.1| tRNA-specific 2-thiouridylase MnmA [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258552113|gb|ACV75059.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 370 Score = 443 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 189/379 (49%), Positives = 246/379 (64%), Gaps = 21/379 (5%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 +DK R+VVAMSGGVDSSVVAAL K G + IG+TLQLY+ A RKGSCCAG+ Sbjct: 5 FQIDKPKSAQRIVVAMSGGVDSSVVAALAKATGAETIGITLQLYDHGAAVGRKGSCCAGK 64 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DAR V + I + HYVFDYE F+ +VI F S Y AG TP+PC+ CN+ VKF+DLL+ Sbjct: 65 DIRDARAVAEKIGIPHYVFDYENNFKESVIDDFVSEYVAGRTPVPCIRCNQGVKFTDLLN 124 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 V R+LGAD LATGHY+R + R M R +D RDQSYFLFATT++QL LRFP Sbjct: 125 VARELGADCLATGHYVRRLVNND-----RVEMHRALDPARDQSYFLFATTKEQLDYLRFP 179 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG + K VR++A E+GL +A K+DSQDICFV G Y +V+ GDIV + G+ Sbjct: 180 LGGLPKPKVREMAAELGLSVAMKADSQDICFVPDGDYARIVEEKCPESGQGGDIVDMQGR 239 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 +LG+H+G+I++T+GQRRGL + EPL+V+ LD +++VGPR++L V + ++E+NW Sbjct: 240 VLGKHSGLIHFTVGQRRGLEIGGQKEPLYVIRLDPAKKQLVVGPRQALAVAKAEIKEVNW 299 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 L DG VKIRS+ PV DG + FEK E GV+ GQA VFY Sbjct: 300 LVDGFDRGM-------QVKIRSAAKPVSARF----DGKELVFEKPEYGVSPGQAAVFYDG 348 Query: 371 DSNEARVLGGGIISGSKRS 389 D +VLGGG I + + Sbjct: 349 D----QVLGGGWIKETTPA 363 >gi|323142835|ref|ZP_08077547.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Succinatimonas hippei YIT 12066] gi|322417377|gb|EFY07999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Succinatimonas hippei YIT 12066] Length = 374 Score = 443 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 122/382 (31%), Positives = 188/382 (49%), Gaps = 27/382 (7%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K + VV+ +SGGVDSS+ AALLK +G V + ++ + C A D D Sbjct: 10 KELQGAHVVIGLSGGVDSSLSAALLKENGMKVTALFMKNWEEDDTD---TVCAAAADRED 66 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR- 134 A++VCD + + ++ + + V F S Y AG TP P + CN+ +KF Sbjct: 67 AQKVCDKLGIELKTINFAAEYWDRVFENFLSEYQAGRTPNPDILCNKEIKFKAFFDYALT 126 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 L AD +ATGHY + + + R +D +DQ+YFL A L + FP+G Sbjct: 127 DLHADFIATGHYAQRSF----NDPLAAHLLRSVDKNKDQTYFLHAIGPNVLHKVLFPVGA 182 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 ++K VR +A E GL A K DS ICF+ + ++ + ++ A G I+ ++GQ +G Sbjct: 183 IEKPQVRLMAEERGLVTARKKDSTGICFIGEKRFHEFLQHYLP--AHSGPIITVDGQTVG 240 Query: 255 RHNGIINYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR 306 H+G++ TIGQR+GL + GEP +VV D ++ +I+ +L + + Sbjct: 241 EHDGLMFATIGQRKGLHIGGSKDGSGEPWYVVDKDIKNNALIIAQGHNHPALYSKGLMAQ 300 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 WL +A FKC KIR Q V V R ++ + V F+ VA GQ+ V Sbjct: 301 NETWLV-----EAPQMPFKCTCKIRYRQPDVNCTVYRENNELKVLFDNKVAAVAPGQSVV 355 Query: 367 FYTSDSNEARVLGGGIISGSKR 388 FY + LGG II+ + + Sbjct: 356 FYQG----SECLGGAIINTAIK 373 >gi|295102218|emb|CBK99763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Faecalibacterium prausnitzii L2-6] Length = 370 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 134/367 (36%), Positives = 196/367 (53%), Gaps = 13/367 (3%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCDT 82 ++AMSGGVDSSV A L++RDG+D GVT++L N ++ +CC+ +D+ DA V Sbjct: 14 LIAMSGGVDSSVAAWLMQRDGFDCTGVTMRLTRNEAVNTEGLHTCCSERDIEDAAEVAYA 73 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 +++ + V D+ F+ +I F Y AG TP PC+DCNR +KF LL G D + Sbjct: 74 MDIPYEVLDFTADFQERIIDKFIRVYEAGGTPNPCIDCNRYMKFDHLLRWAEAHGLDHVV 133 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R D+ R ++ + +D +DQSY L+ TQ+QL +R PLG + K VR Sbjct: 134 TGHYARVE---QDEATGRWLLKKGLDENKDQSYVLYNLTQEQLAHVRLPLGGLHKSEVRA 190 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A + A K DSQDICFV G Y ++ GD + + G+ +G H+G + Y Sbjct: 191 IAEQQHFVNARKHDSQDICFVPDGDYARFMEEFTGKHYPAGDFLDVGGKKVGTHSGAVRY 250 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+AMG P++V D ++ V VGP L +Y E+NW+ + Sbjct: 251 TIGQRKGLGLAMGAPVYVCAKDMQANTVTVGPESELFDTIVYANEVNWIAI----PELKG 306 Query: 323 GFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + + R Q P V D ++F++ + GQA V Y D VLGGG Sbjct: 307 PLRVTARTRYHQTEQPATVYPAGPDSFRLEFDQPQRAPTPGQAVVLYQGDV----VLGGG 362 Query: 382 IISGSKR 388 I+ + Sbjct: 363 TITQVAK 369 >gi|300814306|ref|ZP_07094578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511573|gb|EFK38801.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 351 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 126/372 (33%), Positives = 183/372 (49%), Gaps = 28/372 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ +VV+ MSGGVDSSV A LLK GYDVIGV ++ + G C A +D D + Sbjct: 2 KNKKVVLGMSGGVDSSVAAILLKNQGYDVIGVFMRNWADD------GICTATEDYMDVVK 55 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + ++ ++EE +RN V F + Y G TP P V CN +KF L+ Sbjct: 56 VASQLGIKYFTVNFEEEYRNQVFSYFLNEYKKGRTPNPDVMCNTEIKFKAFLNYALNFDC 115 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +A GHY R++ G + +CR +D +DQSYFL T+ L FP+G+++K+ Sbjct: 116 DYIAMGHYARTKNIDG-----KTYLCRGLDNNKDQSYFLSRVTEDALKKTLFPIGELQKD 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A++ GL A K DS ICF+ + + + + G IV G +LG H+G Sbjct: 171 QVRKIAKDYGLSTALKKDSTGICFIGERDFNKFLDQFL--FTKPGKIVDTQGNVLGEHSG 228 Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +I+YTIGQRR G GEP FV D ++ +IV +L + ++ W+ Sbjct: 229 LIHYTIGQRRGMGIGGKGNGEPFFVADKDLKNNLLIVAQGEKNPALYKKVFQVEDLFWIS 288 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 K VKIR ++ N+ +V + GV GQ VFY + Sbjct: 289 G-----KPHFPLKMTVKIRYRAKDEEALLEENEGKYFVKLKNPLKGVTPGQVAVFYNDEI 343 Query: 373 NEARVLGGGIIS 384 LG GII Sbjct: 344 ----CLGSGIIK 351 >gi|118602730|ref|YP_903945.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|166235080|sp|A1AX17|MNMA_RUTMC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|118567669|gb|ABL02474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 363 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 116/379 (30%), Positives = 180/379 (47%), Gaps = 27/379 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K+ +++V +SGGVDSSV LL + GY V + ++ + + G C QD+ Sbjct: 1 MKNLNKNTKIIVGLSGGVDSSVATLLLLKQGYQVEALFMKNWEEDD---KSGYCSVEQDL 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+++ D ++V + ++ + N V + F + G TP P V CN+ +KF L Sbjct: 58 SDAQKIADKLDVKLHAVNFSADYWNDVFIHFLKEHKKGRTPNPDVLCNQKIKFRVFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R + + +D +DQSYFL Q QL FPLG Sbjct: 118 LSLGADKIATGHYARIA-----EKNGTYQLKTGLDDSKDQSYFLHLLNQYQLSKSLFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++ K VR++A E G A+K DS ICF+ + + + + + +GDIV GQ + Sbjct: 173 EINKIDVRNIAIENGFVTANKKDSTGICFIGERNFSEFLATYLSK--QQGDIVDEQGQFI 230 Query: 254 GRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSR--VIVGPRESLEVHRIYLR 306 H G+ YTIGQR+GL + GEP FV + ++ G L + Sbjct: 231 KHHQGLAFYTIGQRKGLKIGGGFGKSGEPWFVADKCIERNELMIVQGNHALLYHQILSAS 290 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365 + +W+ C KIR Q + +ND+ + V F++ + + GQ+ Sbjct: 291 KPHWIS-----TPPTLPLMCSAKIRYRQQSQSCMISQNDNKQIKVVFKQLQRAITPGQSI 345 Query: 366 VFYTSDSNEARVLGGGIIS 384 VFY + LGG II Sbjct: 346 VFYDN----KTCLGGAIIE 360 >gi|221639030|ref|YP_002525292.1| tRNA-specific 2-thiouridylase MnmA [Rhodobacter sphaeroides KD131] gi|254811459|sp|B9KR64|MNMA_RHOSK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|221159811|gb|ACM00791.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacter sphaeroides KD131] Length = 379 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 187/379 (49%), Positives = 242/379 (63%), Gaps = 12/379 (3%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 LNSL K P RVVVAMSGGVDSSVVAA L +GYDV+GVTLQLY+ A +KG+C Sbjct: 5 PLNSLGFAKPPAATRVVVAMSGGVDSSVVAAELAAEGYDVVGVTLQLYDHGAALAKKGAC 64 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 CAG+D++DARRV +T+ HYV DYE FR AVI FA +Y AG TP+PC+ CN VKF Sbjct: 65 CAGRDIHDARRVAETMGFPHYVLDYENTFREAVIDEFADAYLAGATPVPCIRCNERVKFK 124 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL + L AD +ATGHYI+ ++ G + D RDQSYFLF+TT +QL Sbjct: 125 DLLQTAKDLDADCMATGHYIQRKM-----GPAGPELHCAADPARDQSYFLFSTTPEQLAF 179 Query: 188 LRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 LRFPLG + K R LA GL +ADK DSQDICFV G Y +V++++ G A G+IV Sbjct: 180 LRFPLGHLASKAETRALAARHGLPVADKPDSQDICFVPNGNYAEVIQKLRPGAADPGEIV 239 Query: 247 HLNGQILGRHNGIINYTIGQ-RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 L+G++LG H G+I+YTIGQ R +G+PL+VV LD +VIVGP+E+L + + Sbjct: 240 DLSGRVLGEHRGVIHYTIGQRRGLGIGGLGDPLYVVRLDPERRQVIVGPKEALSTRIVPV 299 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQA 364 REINWLGD ++ K+RS++ ++ +D V+ E GV+ GQA Sbjct: 300 REINWLGDAPLTSR--SEWQVMAKVRSTRASREAVIRPLSDTEAEVELIAPEDGVSPGQA 357 Query: 365 CVFYTSDSNEARVLGGGII 383 CVFY ++R+LGGG I Sbjct: 358 CVFYA--PGDSRILGGGWI 374 >gi|282881825|ref|ZP_06290478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Peptoniphilus lacrimalis 315-B] gi|281298317|gb|EFA90760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Peptoniphilus lacrimalis 315-B] Length = 351 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 126/372 (33%), Positives = 184/372 (49%), Gaps = 28/372 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ +VV+ MSGGVDSSV A LLK GYDVIGV ++ + G C A +D D + Sbjct: 2 KNKKVVLGMSGGVDSSVAAILLKNQGYDVIGVFMRNWADD------GVCTATEDYMDVVK 55 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + ++ ++EE +RN V F + Y G TP P V CN +KF L+ Sbjct: 56 VASQLGIKYFTVNFEEEYRNQVFSYFLNEYKKGRTPNPDVMCNTEIKFKAFLNYALNFDC 115 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +A GHY R++ G + +CR +D +DQSYFL T+ L FP+G+++K+ Sbjct: 116 DYIAMGHYARTKNIDG-----KTYLCRGLDNNKDQSYFLSRVTEDALKKTLFPIGELQKD 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A++ GL A K DS ICF+ + + + + G IV + G +LG H+G Sbjct: 171 QVRKIAKDYGLSTALKKDSTGICFIGERDFNKFLDQFL--FTKPGKIVDIQGNVLGEHSG 228 Query: 259 IINYTIGQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +I+YTIGQRR G GEP FV D ++ +IV +L + ++ W+ Sbjct: 229 LIHYTIGQRRGMGIGGKGNGEPFFVADKDLKNNLLIVAQGEKNPALYKKVFQVEDLFWIS 288 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 K VKIR ++ N+ +V + GV GQ VFY + Sbjct: 289 G-----QPHFPLKMTVKIRYRAKDEEALLEENEGKYFVKLKNPLKGVTPGQVAVFYNDEI 343 Query: 373 NEARVLGGGIIS 384 LG GII Sbjct: 344 ----CLGSGIIK 351 >gi|298490709|ref|YP_003720886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase ['Nostoc azollae' 0708] gi|298232627|gb|ADI63763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase ['Nostoc azollae' 0708] Length = 351 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 145/367 (39%), Positives = 208/367 (56%), Gaps = 23/367 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VVV +SGGVDSSV AA+L GYDVIG+TL L K KG CC+ + DA VC Sbjct: 2 KKVVVGLSGGVDSSVAAAMLHNQGYDVIGLTLWLM------KGKGQCCSEGMI-DAASVC 54 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139 + + + H V D + F+ ++ S Y+ G TPLPC CN+TVKF ++ R+ LG++ Sbjct: 55 EQLGIPHEVVDIRDVFQANIVDYLLSGYSMGITPLPCSQCNKTVKFGPMVEYAREKLGSN 114 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + R D+ R + R + +DQSYFL+ +Q L FPLG++ K Sbjct: 115 AIATGHYAQVRY---DETTGRYKLLRAVYRNKDQSYFLYDLSQDLLSASVFPLGELNKTD 171 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R +A E GL ADK +SQD+C V+ G + R + GDI+ G++LG+H+G Sbjct: 172 TRRIAAEYGLTTADKPESQDLCLVESNGSMRAFLDRYL--VPKPGDILDTTGKVLGQHDG 229 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 + +YTIGQR+G+G+A EPL+V+ LD ++RV+VG R L +NW+ Sbjct: 230 VHHYTIGQRKGIGIAADEPLYVIELDAVNNRVVVGERTKGTQSECTLNRVNWVSIA---- 285 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + V+IR PVPV V +D V + F++ + + GQA V+Y D +V Sbjct: 286 EPATPIRAEVQIRYRSQPVPVTVIPLEDFRVRLVFDEPQFSITPGQAAVWYEGD----KV 341 Query: 378 LGGGIIS 384 LGGGII Sbjct: 342 LGGGIIE 348 >gi|71892171|ref|YP_277903.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|123640946|sp|Q492R5|MNMA_BLOPB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71796277|gb|AAZ41028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 367 Score = 442 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 114/375 (30%), Positives = 190/375 (50%), Gaps = 28/375 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGGVDSSV A LL++ GY V G+ ++ + +++ C + D+ D VC Sbjct: 7 KKVIVGMSGGVDSSVSAWLLQQQGYKVEGLFMKNWEDDDSTE---QCASASDLSDTHSVC 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139 D + + + ++ + + V F Y+ G TP P + CN+ +KF L Q L AD Sbjct: 64 DNLGIYLHTINFSKEYWENVFQVFLQEYSVGRTPNPDILCNKEIKFKYFLEFALQDLDAD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ATGHY+R D ++ + R +D +DQSYFL+ + +QL FP+G + K Sbjct: 124 LIATGHYVRRV-----DMNKKTYLIRGVDRNKDQSYFLYTLSYKQLKQCLFPVGTLNKFQ 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A+++ L A+K DS ICF+ + K+ D + + G I+ +NG +G H G+ Sbjct: 179 VRNIAKKLNLITANKKDSTGICFIGKRKFKDFISKYIP--IRPGVIIDINGNTIGAHQGV 236 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 YT+GQR+GL + G+P +V+ D +++ +I L + W+ Sbjct: 237 SFYTLGQRKGLKIGGVKQGNGQPWYVIDKDTSNNTLIAAQGRNHPRLMSIAFITEQTQWV 296 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTS 370 DA+ C VK R + + ++ + V + + + GQ+ VFY Sbjct: 297 ----KRDALTSPLHCTVKTRYRHPDIQCQIYPLLNNNLKVILKIPVLAITPGQSAVFYLK 352 Query: 371 DSNEARVLGGGIISG 385 + R LGGGII+ Sbjct: 353 E----RCLGGGIITK 363 >gi|144899505|emb|CAM76369.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Magnetospirillum gryphiswaldense MSR-1] Length = 360 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 191/370 (51%), Positives = 245/370 (66%), Gaps = 17/370 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 R+VVAMSGGVDSS AALLK G+DV+GVTLQLY+ +A R +CCAG+D++DAR V Sbjct: 4 KGRIVVAMSGGVDSSATAALLKEQGWDVVGVTLQLYDHGQAVCRPNTCCAGKDIHDARTV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + HYV D E F V+ FA SY GETP+PCV CN+TVKF DL S+ R LGAD Sbjct: 64 ADVLGIPHYVMDMESTFHADVVDKFAESYIRGETPIPCVLCNQTVKFRDLFSIARDLGAD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-MKKE 198 LATGHY++ + D IM + D RDQSYFLF+TT++QL LRFPLG + K+ Sbjct: 124 ALATGHYVQRQ-----DSANGAIMLKGADPGRDQSYFLFSTTREQLEFLRFPLGGFLSKD 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 R +A L +A K DSQDICFV G Y +V+R+ G G IVH+ +G+ LGRH Sbjct: 179 ETRAIAARYNLPVAAKRDSQDICFVPDGDYAGLVQRLKPGAIRPGAIVHVEDGRELGRHQ 238 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GII+YTIGQR+GLG+ G+PL+V+ L+ ++V+VGPRE+L RI +R +NWLGDG Sbjct: 239 GIIHYTIGQRKGLGLGGGDPLYVIRLEAEKAQVVVGPREALGRSRITVRGVNWLGDGDGA 298 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 D F C V++RS++ P+P V+ + G V + E GVA GQACVFY D R Sbjct: 299 D-----FVCQVRVRSTRPPMPARVRLDGQGGGLVMLDMPEQGVAPGQACVFYDGD----R 349 Query: 377 VLGGGIISGS 386 VLGGG I G+ Sbjct: 350 VLGGGWIVGA 359 >gi|171057122|ref|YP_001789471.1| tRNA-specific 2-thiouridylase MnmA [Leptothrix cholodnii SP-6] gi|205816874|sp|B1XX60|MNMA_LEPCP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|170774567|gb|ACB32706.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Leptothrix cholodnii SP-6] Length = 380 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 117/389 (30%), Positives = 179/389 (46%), Gaps = 34/389 (8%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P R+VV +SGGVDS+V A LLK+ G++V+ + ++ + S+ C + QD DA Sbjct: 6 PPKQRIVVGLSGGVDSAVSAWLLKQQGHEVVAIFMKNWEDDDDSEF---CSSRQDFLDAA 62 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 V D + + ++ +++ V F Y+AG TP P V CN +KF L +LG Sbjct: 63 SVADVLGIEIEHVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMRLG 122 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHY R R + + +D +DQSYFL Q QL FP+G++ K Sbjct: 123 ADRIATGHYARVRHNPA---TGLHELLKGLDPLKDQSYFLHRLNQAQLASTLFPVGELPK 179 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR +A E+GL A K DS ICF+ + + + + R + G I G+ +G H Sbjct: 180 TEVRRIALEIGLPNAKKKDSTGICFIGERPFREFLNRYLSHE--PGPIKDDRGRRIGEHV 237 Query: 258 GIINYTIGQRRGLGVAM------------GEPLFVVYLDKNSSRV--IVGP-RESLEVHR 302 G+ YT+GQR+G+G+ EP FV D S+ + + G L+ R Sbjct: 238 GLSFYTLGQRKGIGIGGLKEKGAPRGGGEHEPWFVARKDLASNTLYAVQGHDHPWLQSQR 297 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY---VDFEKSEVGV 359 + + +W+G K R Q V D + F + V Sbjct: 298 LSADDASWIGTVPQPGQGG----LAAKTRYRQADSACAVDALDAAARTLSMSFPAPQWAV 353 Query: 360 ASGQACVFYTSDSNEARVLGGGIISGSKR 388 GQ+ V Y + LGG +I+ + + Sbjct: 354 TPGQSVVLYEGEV----CLGGAVIAAADQ 378 >gi|260886459|ref|ZP_05897722.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Selenomonas sputigena ATCC 35185] gi|260863841|gb|EEX78341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Selenomonas sputigena ATCC 35185] Length = 344 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 138/360 (38%), Positives = 201/360 (55%), Gaps = 19/360 (5%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSS+ AALL+ GY+V+G+T+QL + + DARRV D + + Sbjct: 1 MSGGVDSSLCAALLQEQGYEVLGITMQLSDDSREMN-----GVSSAATDARRVADFLGIE 55 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 H V D+ F + V+ F + Y TP PCV CNR +KF +LLS ++ GAD LATGHY Sbjct: 56 HVVADFRTLFSDKVVDYFLTEYLTARTPNPCVICNRFLKFGELLSFAKEKGADFLATGHY 115 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 +R V + + + D ++DQSY L+ ++ L + FPLG +KE R LA++ Sbjct: 116 VR----VEKEEDGSFSLKKGRDEKKDQSYVLYRLPREILSHILFPLGSYRKEETRALAQK 171 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 + L +A+K++SQ+ICFV + Y + + GDIV + GQILG+H G+ YTIGQ Sbjct: 172 LSLPVANKAESQEICFVPEDDYKAYLSQHRPNRFHTGDIVDMQGQILGQHRGLPFYTIGQ 231 Query: 267 RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKC 326 R+GLG+A PL+V+ LD+ ++RVIVG E L ++ ++NWL + Sbjct: 232 RKGLGIAAAHPLYVIALDEANNRVIVGKNEELYASSLFASDVNWLM-----EEPTQEISV 286 Query: 327 FVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385 KIR V V +DG V V F + + V GQ+ VFY+ + R++GG I Sbjct: 287 HAKIRYGSREVQANVLPLEDGAVKVSFLEPQRAVTPGQSVVFYSGE----RLVGGATIES 342 >gi|193215134|ref|YP_001996333.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chloroherpeton thalassium ATCC 35110] gi|193088611|gb|ACF13886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chloroherpeton thalassium ATCC 35110] Length = 365 Score = 441 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 129/377 (34%), Positives = 195/377 (51%), Gaps = 21/377 (5%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN----SRKASKRKGSCCAGQDVYD 75 +V+V MSGGVDSSV A LL +G++VIGVTL + + S+ + + + + Sbjct: 2 KKKVIVGMSGGVDSSVAACLLAEEGFEVIGVTLHTWEKLPKTNNDSEEQNALSPTHEHEE 61 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A+++ H+ D+ E F+ VI F S Y G TP PCV CN +K+ LL ++ Sbjct: 62 AKQIAAAKGFLHFTIDFREAFQREVIDYFKSEYLLGRTPNPCVICNTKIKWQALLQEAKR 121 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 GA +ATGHY R G R + + D +DQSY L+ +Q+ L RFPL D Sbjct: 122 HGAAYIATGHYARVAKQEG-----RFRLLQGCDASKDQSYVLWGLSQEILEKARFPLADY 176 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252 K+ VR LAR+ L +A+K +SQ+ICF+ Y +K +A + G I+ N Sbjct: 177 TKDEVRALARKYDLPVAEKDESQEICFIPDNNYERFLKDALPNLAEKIAGGKILDTNQNE 236 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 LG+H G YTIGQRRGLG++ P++V + + ++VG ++ L + ++NW+ Sbjct: 237 LGKHRGYPFYTIGQRRGLGISTPAPVYVTDIHAEDNTIVVGSKDDLLHSGLIATDLNWIA 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 + + F+ KIR P V + G V V FE + + GQA VFY+ + Sbjct: 297 FS----KLQEPFQAEAKIRYKDTAEPCVVTPLETGCVQVTFETPKRAITPGQAVVFYSGE 352 Query: 372 SNEARVLGGGIISGSKR 388 +LGGG I + + Sbjct: 353 ----ELLGGGFIQKAIQ 365 >gi|169334729|ref|ZP_02861922.1| hypothetical protein ANASTE_01135 [Anaerofustis stercorihominis DSM 17244] gi|169257467|gb|EDS71433.1| hypothetical protein ANASTE_01135 [Anaerofustis stercorihominis DSM 17244] Length = 354 Score = 441 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 116/368 (31%), Positives = 179/368 (48%), Gaps = 27/368 (7%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDS+V A LLK+ GYDVIG+ ++ ++ + G C A +D DAR VC +N+ Sbjct: 1 MSGGVDSTVSAYLLKKQGYDVIGLFMKNWDE---TDENGECSAEEDYDDARAVCLKLNIP 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGH 145 Y ++ + + + V F Y G TP P V CN+ +KF L L AD +ATGH Sbjct: 58 CYTVNFTKEYWDNVFTYFLDEYKKGRTPNPDVLCNKEIKFKCFLDYAINVLNADYIATGH 117 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y + + K + + D +DQ+YFL ++QL + FPL D++K VR++A Sbjct: 118 YAKV-----EHTKEGTRLLKAKDQHKDQTYFLSLLKEKQLERVIFPLADVEKGEVREIAE 172 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIINYTI 264 G A K DS ICF+ + + ++ GD++ ++ G+ G H G++ YT+ Sbjct: 173 REGFRNAKKKDSTGICFIGERNFTQFLQNYLPN--QPGDMIDMDTGEKKGEHIGLMYYTL 230 Query: 265 GQRR---GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFED 318 GQRR G GE +V D N++ + + L + ++N + D Sbjct: 231 GQRRGLGVGGCGSGERWYVADKDLNNNILYIVQGDKNPKLYKNGFIATDVNMISGHYPSD 290 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 F+C ++ R Q V+ D+ V F++ + GV GQ VFY + Sbjct: 291 K----FECEMRFRHLQPLKKATVEVIDESTARVIFDEEQSGVTPGQIAVFYDGEV----C 342 Query: 378 LGGGIISG 385 LGGG I Sbjct: 343 LGGGTIDK 350 >gi|298206785|ref|YP_003714964.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Croceibacter atlanticus HTCC2559] gi|83849417|gb|EAP87285.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Croceibacter atlanticus HTCC2559] Length = 396 Score = 441 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 124/405 (30%), Positives = 194/405 (47%), Gaps = 50/405 (12%) Query: 21 MR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 M+ VVV +SGGVDSSV A LLK GY+VIG+ ++ ++ + C D DA V Sbjct: 1 MKSVVVGLSGGVDSSVSAYLLKEQGYEVIGLFMKNWHDDTVT-ISDECPWLDDSNDAMLV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + + D E ++ ++ + Y G TP P V CNR +KF + + LGAD Sbjct: 60 AEKLGIPFQTVDLSEEYKERIVDYMFNEYKNGRTPNPDVLCNREIKFDVFMKIAMSLGAD 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + + DG+ + D +DQSYFL +Q+QL FP+G+++K Sbjct: 120 YVATGHYCR-KSSIEKDGETIYQLLSGKDNNKDQSYFLCQLSQEQLSKTLFPIGELQKSE 178 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL----------- 248 VR +A E L ADK DSQ +CF+ + + D +++ EGDIV + Sbjct: 179 VRKIAAEQDLVTADKKDSQGLCFIGKVRLPDFLQQQLK--PKEGDIVEIDSTLDQYAKDT 236 Query: 249 -----------------------NGQILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLD 284 +G+++G+H G +T GQR+GLG EPLFV+ D Sbjct: 237 KEDFNTTEEELAYLSKKFTYNFEDGKVVGKHQGAHYFTKGQRKGLGVGGTPEPLFVIDTD 296 Query: 285 KNSSRVIVG---PRESLEVHRIYLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339 + + G L +++ EI+W+ + L D D +IR Q Sbjct: 297 VEENIIYTGQGKQHPGLYRRGLFVSPHEIHWIREDLKLDT-GDTMNVMARIRYRQTLEKA 355 Query: 340 FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + + + G+YV F+ + +A GQ +Y + ++G G+IS Sbjct: 356 TLHQTEHGLYVIFDNPQSAIAEGQFVAWYQDE----ELIGSGVIS 396 >gi|329119430|ref|ZP_08248115.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria bacilliformis ATCC BAA-1200] gi|327464363|gb|EGF10663.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria bacilliformis ATCC BAA-1200] Length = 365 Score = 441 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 119/375 (31%), Positives = 183/375 (48%), Gaps = 24/375 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +VV +SGGVDSSV AALLK+ G+ V GV +Q + + C QD +DA V Sbjct: 5 QHNIVVGLSGGVDSSVTAALLKQQGHSVRGVFMQNWEDDDNDE---YCSIKQDSFDAIAV 61 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + + ++ ++++ V F Y+AG TP P V CN +KF L + GAD Sbjct: 62 ADIIGIDIDIVNFAAQYKDKVFAYFLKEYSAGRTPNPDVLCNAEIKFKCFLDYALEQGAD 121 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 V+ATGHY R + G R + + +D +DQSYFL+ QL FPLG ++K Sbjct: 122 VIATGHYARKEIIGG-----RHCLLKGLDGNKDQSYFLYRLKPHQLERAVFPLGGLEKPE 176 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA L A K DS ICF+ + + + +++ G ++ G+ +G H G+ Sbjct: 177 VRRLAEAFKLPTAAKKDSTGICFIGERPFREFLQQYLP--TNPGKMITPEGKTMGEHVGL 234 Query: 260 INYTIGQRRGLGVAM-GEPLFVVYLDKNSSR--VIVGP-RESLEVHRIYLREINWLGDGL 315 YTIGQR+GLG+ GEP FV + + V+ G L + + + ++++ Sbjct: 235 TFYTIGQRKGLGIGGAGEPWFVAGKNLPRNELLVVQGHDHPLLYTNSLVMNDLSFTLPER 294 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 + + K R P ++ ++D + F+ + V GQ+ V Y D Sbjct: 295 PKPG-----RYTCKTRYRMADAPCELRYLDEDTAELVFDMPQWAVTPGQSAVLYDGDV-- 347 Query: 375 ARVLGGGIISGSKRS 389 LGGGII + + Sbjct: 348 --CLGGGIIVSTDKP 360 >gi|56416599|ref|YP_153673.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaplasma marginale str. St. Maries] gi|222474965|ref|YP_002563380.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU) [Anaplasma marginale str. Florida] gi|269958985|ref|YP_003328774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaplasma centrale str. Israel] gi|81359210|sp|Q5PBB1|MNMA_ANAMM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|56387831|gb|AAV86418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaplasma marginale str. St. Maries] gi|222419101|gb|ACM49124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU) [Anaplasma marginale str. Florida] gi|269848816|gb|ACZ49460.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaplasma centrale str. Israel] Length = 387 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 180/384 (46%), Positives = 245/384 (63%), Gaps = 15/384 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 MV + L+ L K P++ VVVAMSGGVDSSVVAALL GY VIG T+QL++S A Sbjct: 9 MVFDGSLNLDPLVSGKPPEETTVVVAMSGGVDSSVVAALLHERGYKVIGATMQLHSSSPA 68 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 S K SCC D+YDA+RV T+ HYV DYEE FR VI F +SY GETP+PCV C Sbjct: 69 SGAK-SCCGSVDIYDAKRVASTLGFPHYVLDYEEVFRREVIDDFINSYKRGETPIPCVKC 127 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N+TVKF D+L R +G DV+ATGHY+R G+ + R D ++DQSYFLF+ Sbjct: 128 NQTVKFRDMLKAARAIGGDVVATGHYVRRVEIAGEQ-----QILRGKDPQKDQSYFLFSV 182 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 T +QL LRFPLGD+ K +VR LA+++ L++ADK DSQDICFV + Y +V++ ++ Sbjct: 183 TSEQLKFLRFPLGDLAKSNVRLLAQQLNLEVADKPDSQDICFVPENSYREVLRNLDPASV 242 Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300 +G IVH++G++LG H+GI N+T+GQRRGL ++ PL+VV LD + V+VGP+ +L Sbjct: 243 KKGKIVHVDGRLLGEHDGISNFTVGQRRGLNISAPYPLYVVRLDAAQNTVVVGPQSALMK 302 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGV 359 ++++ +NWL D + G ++RSS V + + DG V E+ V V Sbjct: 303 RALFVKNLNWLPD---YNIPKRGLAVDARLRSSGATVRATITSDGDGYGTVVLEEDCV-V 358 Query: 360 ASGQACVFYTSDSNEARVLGGGII 383 + GQACV Y + R+LGGG I Sbjct: 359 SPGQACVLYDKE----RLLGGGWI 378 >gi|294010267|ref|YP_003543727.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Sphingobium japonicum UT26S] gi|292673597|dbj|BAI95115.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Sphingobium japonicum UT26S] Length = 373 Score = 441 bits (1135), Expect = e-121, Method: Composition-based stats. Identities = 192/373 (51%), Positives = 237/373 (63%), Gaps = 21/373 (5%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 DL P R+VVAMSGGVDSSVVAAL R G + IGVTLQLY+ A R GSCCAGQ Sbjct: 10 FDLKAPPDARRIVVAMSGGVDSSVVAALAARTGAETIGVTLQLYDHGAAVGRTGSCCAGQ 69 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DAR V D I ++HYVFDYE RFR++VI FA Y AG TP+PCV CN VKF+DL Sbjct: 70 DIRDARAVADRIGIAHYVFDYESRFRDSVIADFADEYMAGRTPIPCVKCNMGVKFTDLFQ 129 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + R LGAD LATGHY+R +G + + R D RDQSYFLFATTQ QL LRFP Sbjct: 130 IARDLGADCLATGHYVRRV-----EGPQGAELHRAADSARDQSYFLFATTQAQLDYLRFP 184 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG + K VR++A E+GL +A K DSQDICFV G Y +V+++ GDIVH++G+ Sbjct: 185 LGGLPKPQVREIAAELGLSVALKPDSQDICFVPDGDYAKIVRKLRPDADEGGDIVHIDGR 244 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 ++G H G+I+YT+GQR+GL + EPL+VV LD + RVIVGP+ +L V L +INW Sbjct: 245 LMGTHKGMIHYTVGQRKGLEIGGQAEPLYVVRLDAEARRVIVGPKAALAVSAARLSDINW 304 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 LG K+RS PVP ++ + + F+ E GVA GQA V Y Sbjct: 305 LGGDFAGP-------LTAKVRSMAKPVPARLEGD----RLVFDAPEYGVAPGQAAVLYAG 353 Query: 371 DSNEARVLGGGII 383 D RVLGGG I Sbjct: 354 D----RVLGGGWI 362 >gi|225573524|ref|ZP_03782279.1| hypothetical protein RUMHYD_01717 [Blautia hydrogenotrophica DSM 10507] gi|225039121|gb|EEG49367.1| hypothetical protein RUMHYD_01717 [Blautia hydrogenotrophica DSM 10507] Length = 362 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 133/371 (35%), Positives = 206/371 (55%), Gaps = 15/371 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRV 79 RVV+ MSGGVDSSV A LLK+ GY+V+GVT++ + S G + + + DA+ V Sbjct: 4 KRVVIGMSGGVDSSVAAYLLKKAGYEVLGVTMKTWTPVSESADDPGLGGSPEVIEDAKEV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + +S+YV D++ F + V+ F Y G TP PCV CNR VK+ LL+ ++LGAD Sbjct: 64 ARALGISYYVVDFQRDFSDYVVDYFTQEYLEGRTPNPCVVCNRYVKWEALLNKAKELGAD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R + +DQ+Y L+ TQ QL P+GD KE Sbjct: 124 YIATGHYARIVCL----ENGRYALKTCEVSAKDQTYALYNLTQAQLAHTLMPVGDYNKEE 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R++A ++GL +ADK DSQ+ICF+ Y + +++ +G+ V G ++G+H GI Sbjct: 180 IREIASKIGLPVADKPDSQEICFIPDHDYANFIRQRTGKEVCQGNFVTAGGTVVGQHRGI 239 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 I+YTIGQR+GL ++MG P+FV + ++ V++G + + + +IN++G FE Sbjct: 240 IHYTIGQRKGLNLSMGRPVFVTEIRPKTNEVVIGDAQEVFASALRCTKINYMGIEKFE-- 297 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 +G + KIR + P ++++ D V F + + + GQA VFY E V Sbjct: 298 --EGMELLAKIRYNHKGAPCWIEKVLPDGDVICRFAQPQRAITPGQAVVFYQ----EGYV 351 Query: 378 LGGGIISGSKR 388 GG I + + Sbjct: 352 AAGGTIVTAVK 362 >gi|15838041|ref|NP_298729.1| tRNA-specific 2-thiouridylase MnmA [Xylella fastidiosa 9a5c] gi|14195287|sp|Q9PDD9|MNMA_XYLFA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|9106458|gb|AAF84249.1|AE003974_4 tRNA methyltransferase [Xylella fastidiosa 9a5c] Length = 379 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 118/374 (31%), Positives = 180/374 (48%), Gaps = 28/374 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R++VAMSGGVDSSV A L + G+ ++ + G C A +D DA VC Sbjct: 5 RIIVAMSGGVDSSVAAWRLNSQRETIAGLFMRNWTDDGN----GQCHAEEDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + ++ + D+ + V F + YA G TP P V CNR +KF L R+LGAD + Sbjct: 61 ILGIAFHFRDFSHEYWQEVFTHFLAEYANGRTPNPDVLCNREIKFKHFLETARELGADSI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + Y ++R + R D +DQSYFL Q+QL FP+GD++K +R Sbjct: 121 ATGHYARIKHY-----RQRWHLLRGADRSKDQSYFLHQLGQEQLAATMFPIGDLEKPQLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA + GL K DS ICF+ + + + +K+ A G+I Q + H G+ Sbjct: 176 QLAHQAGLPTHAKKDSTGICFIGERNFREFLKQYLP--AQPGEIRDPQEQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313 +T+GQR+GL + P +V+ D ++ + V L+ + +W+ Sbjct: 234 FTLGQRQGLNIGGVRNRPPSPWYVIGKDLATNVLYVDQHRDSPFLQSRWLRSEPAHWVSG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 F C + R Q P V +DG + VDF +++ V GQ+ V Y + Sbjct: 294 S----PPAPTFTCTAQTRYRQADEPCKVTVRNDGSLDVDFTQTQWAVTPGQSLVLYDGN- 348 Query: 373 NEARVLGGGIISGS 386 LGG +I+ + Sbjct: 349 ---ECLGGAVIATT 359 >gi|159897370|ref|YP_001543617.1| tRNA-specific 2-thiouridylase MnmA [Herpetosiphon aurantiacus ATCC 23779] gi|205816856|sp|A9AYA7|MNMA_HERA2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|159890409|gb|ABX03489.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Herpetosiphon aurantiacus ATCC 23779] Length = 357 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 141/368 (38%), Positives = 211/368 (57%), Gaps = 16/368 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +++VAMSGGVDSS+ A LLK G+DV GVT+ L+ + CC+ + ARRVC Sbjct: 3 KIMVAMSGGVDSSLTAVLLKEQGHDVTGVTMHLWEGDDNGIMESQCCSVEMTAGARRVCA 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 ++ +YVF+Y++ FR VI F Y++G TP PC+ CNR +KF LL LG D L Sbjct: 63 QYDIPYYVFNYQKDFRKHVIDYFLREYSSGATPNPCLACNRDLKFRVLLERAELLGFDGL 122 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGH+++ + G++ + R +D+ +DQSY L+ +Q++L L FPLG K VR Sbjct: 123 ATGHFVQ----ITGGGEQPYDLRRGIDINKDQSYVLYMLSQRELGRLHFPLGGFTKPQVR 178 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +ARE GL ADK +S DICF+ Y + I G IV+ +G +LG+H G+ Sbjct: 179 QMARERGLVTADKPESMDICFIPDNNYRRFLNEERPEIMQPGPIVNRHGTVLGQHKGLPQ 238 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQR+GLG+A G PLFV+ +D + +IVG + LE + ++ + + Sbjct: 239 YTIGQRKGLGIAAGSPLFVIEIDTVRNLLIVGDADELERRDFVIDDVRSVYGQI------ 292 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 + V+IR+ + VP + +DG +++ +++ + V GQA V Y D RV GG Sbjct: 293 EAGIYAVQIRAHGEAVPATITPREDGTLHIRYDQPQRSVTPGQAAVLYRDD----RVFGG 348 Query: 381 GIISGSKR 388 G I ++R Sbjct: 349 GRI-STER 355 >gi|196232683|ref|ZP_03131534.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chthoniobacter flavus Ellin428] gi|196223143|gb|EDY17662.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chthoniobacter flavus Ellin428] Length = 363 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 146/372 (39%), Positives = 188/372 (50%), Gaps = 16/372 (4%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LLKR GYDV+GVT++++ S+ + CC Q + DAR V + V Sbjct: 1 MSGGVDSSVAAYLLKRQGYDVVGVTMKVWPQDCISRAEDKCCGPQAIADARGVAHALGVP 60 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 HYV D E F VI F Y G TP PCV CN VKF +L + LGA+ +ATGHY Sbjct: 61 HYVVDEGENFERLVIDYFTEEYKNGRTPNPCVMCNEKVKFGNLWGKAKALGAEYIATGHY 120 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 + R ++ + D +DQSYFLF+ Q QL PLG+M K +R +AR+ Sbjct: 121 AIIEHHAD-----RAVLRKGRDPRKDQSYFLFSLRQAQLQHAICPLGEMSKPEIRAIARQ 175 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 +GL +A+K DSQ+ICFV Y +K + AG G I G L H GI +TIG Sbjct: 176 LGLKVAEKEDSQEICFVPGNDYKAFLKSHMGAGEFHPGGIYDKAGNRLAEHEGIEMFTIG 235 Query: 266 QRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE--DAVVDG 323 QR+GL P +V+ +D +S VIVG E L + W + + Sbjct: 236 QRKGLPGGSPRPRYVIDIDPVTSSVIVGDAEDLITGEFTIDHCMWHPSTSLRAGGSATEP 295 Query: 324 FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGI 382 F+ VKIR V ++G V K + V GQA V Y D VLGGG Sbjct: 296 FEVNVKIRYGHAGADATVYPGENGEARVRLHKPQRAVTPGQAAVCYRGD----EVLGGGW 351 Query: 383 ISGSKRSDAVEE 394 I R AVE Sbjct: 352 I---VRQMAVEP 360 >gi|291531960|emb|CBK97545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium siraeum 70/3] Length = 358 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 139/365 (38%), Positives = 207/365 (56%), Gaps = 13/365 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78 + + V+AMSGGVDSSV A L+K+ G+D IGVT++L+ N R+ SCC+ DV D R Sbjct: 2 NNKAVIAMSGGVDSSVAAYLMKQRGFDCIGVTMKLFANEDIGISREHSCCSLDDVDDVRS 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V ++++ +YVF++ +RF VI F +Y G TP PC+DCNR +KF L ++L Sbjct: 62 VAYSLDMPYYVFNFSDRFETDVIDRFIHAYENGITPNPCIDCNRYLKFDKLYMRAKELDR 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGHY R V DG R ++ + +D +DQSY L+ TQ+QL FPLG M+K Sbjct: 122 DYVVTGHYAR----VEKDGNGRFLLKKALDDTKDQSYVLYCLTQEQLSHTIFPLGKMRKS 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R++A G A K+DSQDICFVQ G Y D +++ +GD + NG ++GRH G Sbjct: 178 QAREIAESQGFINARKADSQDICFVQNGSYADFIEQYTGKNYPDGDFLDTNGNVIGRHKG 237 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 +I YT+GQR+GLG++ EPL+V ++ S+ V + + L + +IN + Sbjct: 238 VIRYTVGQRKGLGISAPEPLYVKAVNPVSNTVTLSYNDGLYSSIVKAGDINLISV----P 293 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + K+R V +N + + F++ + V GQA V Y D+ V+ Sbjct: 294 EIKGEMRVKAKVRYRHTEQWATVTQNGETLTAVFDEPQRAVTCGQALVLYDGDT----VV 349 Query: 379 GGGII 383 GGG I Sbjct: 350 GGGTI 354 >gi|312898012|ref|ZP_07757421.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Megasphaera micronuciformis F0359] gi|310620937|gb|EFQ04488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Megasphaera micronuciformis F0359] Length = 358 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 146/366 (39%), Positives = 200/366 (54%), Gaps = 16/366 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS---CCAGQDVYDARRV 79 + VAMSGGVDSSV A LLK GY+VIG+TL+L+ A K + + CC+ V DA+ V Sbjct: 5 IAVAMSGGVDSSVTAGLLKEQGYEVIGITLRLWEEEPACKVERNIHACCSLDSVNDAKAV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + HY D+ + FR+ VI F SYA G+TP PC+ CNR +KF L +Q GAD Sbjct: 65 ADVLGIRHYTLDFRDVFRHDVIDYFIDSYAHGKTPNPCIACNRFIKFGLLWDQAQQFGAD 124 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +LATGHY R V D+ ++ + R D +DQSY L+ TQ L + FP+ D++K Sbjct: 125 LLATGHYAR---IVYDNERKIYTLRRGKDERKDQSYVLYQLTQDLLKHIIFPMADLEKTK 181 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R+LA+E GL + +K +SQDICF+ Y +K+ I G G+ +G H GI Sbjct: 182 TRELAKEWGLPVFNKPESQDICFIPDNDYKGFLKKEAPYIFKAGRFTDGQGRTVGTHKGI 241 Query: 260 INYTIGQRR-GLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 YTIGQRR G P +VV LD+ ++ V VG L I ++ W E Sbjct: 242 AAYTIGQRRGLNLGGPGGPYYVVSLDEKNNEVRVGSERELFSAEIKAHDVTWT-----ET 296 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + FK + KIR + P V + + V F+K + +GQA V Y D RVL Sbjct: 297 VREEPFKAYGKIRYAAQAAPCTVYPAGNEMKVVFDKPQRAATAGQALVLYEDD----RVL 352 Query: 379 GGGIIS 384 GGG I+ Sbjct: 353 GGGTIT 358 >gi|255002942|ref|ZP_05277906.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU) [Anaplasma marginale str. Puerto Rico] gi|255004068|ref|ZP_05278869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU) [Anaplasma marginale str. Virginia] Length = 379 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 180/384 (46%), Positives = 245/384 (63%), Gaps = 15/384 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 MV + L+ L K P++ VVVAMSGGVDSSVVAALL GY VIG T+QL++S A Sbjct: 1 MVFDGSLNLDPLVSGKPPEETTVVVAMSGGVDSSVVAALLHERGYKVIGATMQLHSSSPA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 S K SCC D+YDA+RV T+ HYV DYEE FR VI F +SY GETP+PCV C Sbjct: 61 SGAK-SCCGSVDIYDAKRVASTLGFPHYVLDYEEVFRREVIDDFINSYKRGETPIPCVKC 119 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N+TVKF D+L R +G DV+ATGHY+R G+ + R D ++DQSYFLF+ Sbjct: 120 NQTVKFRDMLKAARAIGGDVVATGHYVRRVEIAGEQ-----QILRGKDPQKDQSYFLFSV 174 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 T +QL LRFPLGD+ K +VR LA+++ L++ADK DSQDICFV + Y +V++ ++ Sbjct: 175 TSEQLKFLRFPLGDLAKSNVRLLAQQLNLEVADKPDSQDICFVPENSYREVLRNLDPASV 234 Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300 +G IVH++G++LG H+GI N+T+GQRRGL ++ PL+VV LD + V+VGP+ +L Sbjct: 235 KKGKIVHVDGRLLGEHDGISNFTVGQRRGLNISAPYPLYVVRLDAAQNTVVVGPQSALMK 294 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGV 359 ++++ +NWL D + G ++RSS V + + DG V E+ V V Sbjct: 295 RALFVKNLNWLPD---YNIPKRGLAVDARLRSSGATVRATITSDGDGYGTVVLEEDCV-V 350 Query: 360 ASGQACVFYTSDSNEARVLGGGII 383 + GQACV Y + R+LGGG I Sbjct: 351 SPGQACVLYDKE----RLLGGGWI 370 >gi|307243659|ref|ZP_07525800.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Peptostreptococcus stomatis DSM 17678] gi|306492969|gb|EFM64981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Peptostreptococcus stomatis DSM 17678] Length = 350 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 135/365 (36%), Positives = 214/365 (58%), Gaps = 17/365 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RV++ MSGGVDSSV A LL+++GY+V+G T+ L++ + +K + DAR VC Sbjct: 2 KRVLLGMSGGVDSSVAAFLLQKEGYEVVGATMALWDFKDGNKDTS-------IEDARVVC 54 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + H+V D+ E F++ V+ F Y AG+TP PCV CN+T+KF L R+LG D Sbjct: 55 NKLKIDHHVLDFREDFKDLVVDNFIDEYFAGKTPNPCVFCNKTIKFGLLFDKARELGCDY 114 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY L ++ + + + +DQ+Y L+ Q++L FP+G K+++ Sbjct: 115 VATGHYA---LVDFNEKSGKYEIKKASSDSKDQTYVLYNLNQEKLARTLFPIGKYDKDTI 171 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 RD+A+E+GL++ +K DSQDICF+ Y +K + G+ V +G++LGRH GII Sbjct: 172 RDMAKEIGLEVHNKPDSQDICFIPDHDYEAFLKENSKKKVEVGNFVDRSGKVLGRHKGII 231 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +YTIGQR+GLG+ G+P +VV ++ +++G + L + R++N++ +D V Sbjct: 232 SYTIGQRKGLGITFGKPTYVVAINGQDKSIVLGDNDDLFKTSLTARDVNFV--EWSQDEV 289 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 V + K+R + P V V VDF + + + SGQ+ VFY+ D R+LG Sbjct: 290 VGPIDVYAKVRYAAKPAQAKVTYIGKYRVRVDFVEPQRAITSGQSVVFYSED----RLLG 345 Query: 380 GGIIS 384 GGII Sbjct: 346 GGIIE 350 >gi|118444647|ref|YP_878354.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium novyi NT] gi|205813888|sp|A0Q152|MNMA_CLONN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|118135103|gb|ABK62147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium novyi NT] Length = 350 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 125/367 (34%), Positives = 202/367 (55%), Gaps = 27/367 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V V +SGGVDSSV A LLK GYD+IG+T+++ C DA++V Sbjct: 6 KKVAVGLSGGVDSSVAAYLLKEKGYDLIGITMKVS------------CDLDVSEDAKKVA 53 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + +YV D E F+N VI FA Y G TP PC CN+ +KF L+ ++LGAD Sbjct: 54 DKLGIPYYVIDLTEEFKNKVIDNFAEEYLQGRTPNPCAVCNKHIKFGALIQKAKELGADY 113 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R ++ R ++ D ++DQ+Y ++ TQ L + P G+ K+ + Sbjct: 114 IATGHYARI-----EEHNGRFLVLNAKDDKKDQTYMFYSLTQDVLKHILMPCGEYTKDQI 168 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN-AGIALEGDIVHLNGQILGRHNGI 259 R++A+++GL++ +K +S DICF+ + +K + G+ V +G+ILG H G+ Sbjct: 169 REIAKKIGLEVHNKKESMDICFIPDNDHGKYIKGLECRDRIKPGNFVDKDGKILGTHKGL 228 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 I YTIGQR+GLG+++G+P FV+ ++ + V++G E + + +E+N++ D+ Sbjct: 229 IYYTIGQRKGLGLSLGKPGFVIDINPERNEVVIGDEEEIFNEGLIAKEVNFI----PFDS 284 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + + KIR S + DDG + V F+ + + GQ VFY D ++ Sbjct: 285 LENPMEVEAKIRYSTTKSKATIIPYDDGKIKVMFKDKQRAITKGQRVVFYIQD----MLV 340 Query: 379 GGGIISG 385 GGG I Sbjct: 341 GGGTIES 347 >gi|301167152|emb|CBW26731.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteriovorax marinus SJ] Length = 382 Score = 440 bits (1133), Expect = e-121, Method: Composition-based stats. Identities = 126/379 (33%), Positives = 201/379 (53%), Gaps = 18/379 (4%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+ ++ V+V MSGGVDSSV AA+LK GY+VIG+ ++ + + + G C + ++ D Sbjct: 11 KSNEETTVIVGMSGGVDSSVCAAVLKEQGYNVIGMFMKNWEEQDEN---GVCQSSKEYAD 67 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 VC+ +++ +Y D+ + +R+ V F Y AG TP P + CNR +KF L+ + Sbjct: 68 VISVCEKLDIPYYSVDFVKEYRDNVFQHFLDEYEAGFTPNPDILCNREIKFKVFLNKALE 127 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LGAD LATGHY ++ L G++ + + D +DQ+YFL+ +++L + FP+G + Sbjct: 128 LGADYLATGHYCQNILIDGEN-----HLVKGNDPGKDQTYFLYTMKKEKLEHVHFPIGHL 182 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K VR LA + L K DS ICF+ + + + + G L+G+ +G Sbjct: 183 PKTEVRKLAEKFDLSTKHKKDSTGICFIGERNFKNFLSNYIQ--IKPGKFETLSGEEVGE 240 Query: 256 HNGIINYTIGQRR-GLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWL 311 H+G YTIGQR+ G P FVV D + VIV +L ++ EI+W+ Sbjct: 241 HSGSAYYTIGQRKGLGLGGPGAPWFVVGKDTKRNVVIVERGEDHPALFFDELWADEISWV 300 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTS 370 + KC KIR Q+ + + +DG ++V F++++ VA Q+ VFYT Sbjct: 301 SGEFKGELP---LKCKAKIRYRQEDQDCTITKIEDGELHVQFDQAQRAVALRQSIVFYTQ 357 Query: 371 DSNEARVLGGGIISGSKRS 389 A LGG +IS + +S Sbjct: 358 VQGHAVCLGGAMISRAGKS 376 >gi|285018226|ref|YP_003375937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xanthomonas albilineans GPE PC73] gi|283473444|emb|CBA15949.1| probable trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase protein [Xanthomonas albilineans] Length = 397 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 122/388 (31%), Positives = 176/388 (45%), Gaps = 37/388 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------------C 67 R++V +SGGVDSSV A L + G+ V G+ +Q + S C Sbjct: 4 TRIMVGVSGGVDSSVAAWQLVQQGHTVSGLFMQNWADDGNGDVHDSASIAEDRKPKATTC 63 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 A D DA VC + + + D+ + + V F + YAAG TP P V CNR VKF Sbjct: 64 RAEADRRDAVAVCGMLGIPFHFRDFSKEYWQGVFAHFLAEYAAGRTPNPDVLCNREVKFK 123 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 L R LGA+ +ATGHY R RR + R +D +DQSYFL Q QL Sbjct: 124 HFLDAARDLGAERIATGHYARVAFV-----DRRWRLLRGLDRNKDQSYFLHQLGQAQLAA 178 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 FP+G++ KE VR +AR+ GL K DS ICF+ + + + R A G+I Sbjct: 179 TLFPVGELPKEQVRRIARQAGLPTHAKKDSTGICFIGERDFRTFLSRYLP--ARRGEIRD 236 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLE 299 + QI+ H G+ +T+GQR GL + P +V+ D + + V L Sbjct: 237 PHEQIVAEHPGVFYFTLGQREGLNIGGVRGRAAAPWYVIGKDVARNVLYVDQDRDSPHLM 296 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVG 358 ++ +W+ F C + R Q P V+ DDG + V F + + Sbjct: 297 ATQLRSESAHWIAGA----PPARHFACRAQTRYRQADEPCMVEIRDDGTLTVQFTRPQRA 352 Query: 359 VASGQACVFYTSDSNEARVLGGGIISGS 386 V GQ+ V Y + LGG +I+ + Sbjct: 353 VTPGQSLVLYQGE----ECLGGAVIATT 376 >gi|330813834|ref|YP_004358073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Pelagibacter sp. IMCC9063] gi|327486929|gb|AEA81334.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Pelagibacter sp. IMCC9063] Length = 379 Score = 440 bits (1132), Expect = e-121, Method: Composition-based stats. Identities = 184/384 (47%), Positives = 248/384 (64%), Gaps = 13/384 (3%) Query: 4 SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63 + +NSL K P++ +VVVAMSGGVDSS VA LLK Y VIG+TLQLY+ K K Sbjct: 7 TNTNSINSLGFAKAPEETKVVVAMSGGVDSSTVAGLLKEQNYHVIGITLQLYDYGKIGKT 66 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 G+CCAG+D+YDA+RV + +N+ H+VF+YE F+ VI FA SY GETP+PCV CN+T Sbjct: 67 SGTCCAGKDIYDAKRVSEQLNIEHHVFNYESLFKEEVIEKFADSYLKGETPIPCVSCNQT 126 Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183 VKF DL ++LGAD L TGHY++ + + M +P+D RDQSYFLF+TTQ+ Sbjct: 127 VKFRDLFKSAKKLGADALVTGHYVKRLGNL-----NQSKMYQPVDANRDQSYFLFSTTQE 181 Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243 QL LRFPL D+ K+ RDLA++M L +ADK DSQDICFV G Y V++++ G Sbjct: 182 QLDYLRFPLADLPKQETRDLAKKMNLSVADKPDSQDICFVPNGNYKSVIEKLRPESYDPG 241 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302 +IV L G++LGRHNGIIN+TIGQR+G+ E +FV+ ++ + VIVG R+ L + + Sbjct: 242 NIVDLEGKVLGRHNGIINFTIGQRKGIKVGGQEEAIFVIKINPETKDVIVGSRQDLNITK 301 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362 I ++EIN+L D + F+K+RS+ +P V +D V + E GV+ G Sbjct: 302 IQVKEINFLCDPKELEG-----NFFIKVRSTGRLLPCRV--SDSATSVTLQAGESGVSPG 354 Query: 363 QACVFYTSDSNEARVLGGGIISGS 386 QACVFY D RV GGG I + Sbjct: 355 QACVFYRKDDKGMRVYGGGWIVST 378 >gi|21242742|ref|NP_642324.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas axonopodis pv. citri str. 306] gi|24638307|sp|Q8PL08|MNMA_XANAC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|21108220|gb|AAM36860.1| tRNA methyltransferase [Xanthomonas axonopodis pv. citri str. 306] Length = 378 Score = 439 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 125/386 (32%), Positives = 182/386 (47%), Gaps = 31/386 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+VV +SGGVDSSV A L + G + G+ +Q + A G C A D DA VC Sbjct: 5 RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + + V F + YAAG TP P V CNR VKF L + LGA+ + Sbjct: 61 VLGIPFHFRDFSGEYWSDVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + G R + R D +DQSYFL Q QL FP+GD++K ++R Sbjct: 121 ATGHYAQVAHRGG-----RWRLLRGADRGKDQSYFLHQLGQTQLAATLFPIGDLEKSTLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A++ GL K DS ICF+ + + + + R A G+I GQ + H G+ Sbjct: 176 RIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313 +T+GQR GL + P +VV D ++ + V L+ + + +W+ Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 F C + R Q V DDG V V FE+ + V GQ+ V Y + Sbjct: 294 A----PPARRFSCTAQTRYRQPDESCTVDVQDDGSVQVRFERPQRAVTPGQSLVLYDGE- 348 Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398 LGG +I+ + DA E L+ Sbjct: 349 ---ECLGGAVIAAT---DAPLERQLA 368 >gi|189426122|ref|YP_001953299.1| tRNA-specific 2-thiouridylase MnmA [Geobacter lovleyi SZ] gi|226704771|sp|B3E966|MNMA_GEOLS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|189422381|gb|ACD96779.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacter lovleyi SZ] Length = 354 Score = 439 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 147/372 (39%), Positives = 216/372 (58%), Gaps = 23/372 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+ VAMSGGVDSSVVAALL++ G++VIG+T+QL+ S G +D +V Sbjct: 3 RIAVAMSGGVDSSVVAALLQQQGHEVIGITMQLF-------EPCSSGPGTPAHDGAQVAA 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H++ E +FR+ +I F Y G+TP PC+ CNR +KF LL R+LGA++L Sbjct: 56 QLGIPHHLLRLEPQFRDLIIDNFIDQYRQGQTPNPCILCNRLIKFGLLLEQARELGAELL 115 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KKESV 200 ATGHY+R VG DG + + +DQSYFL++ +QQQL + FPLG++ K+ V Sbjct: 116 ATGHYVRRT--VGPDG--LCHLRTAANQAKDQSYFLYSLSQQQLRQVIFPLGEIASKDEV 171 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R LA GL +A K DSQ++CF+ Y +++ A G+IVH+ GQ+LGRH+G Sbjct: 172 RSLATGFGLAVATKGDSQEVCFIPNDDYAAFLEQQG-IKASPGNIVHIGGQVLGRHSGTH 230 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQR+GLG+ EPL+V+ +D + + ++VG ++ L + +I+W+ Sbjct: 231 RYTIGQRKGLGIGWSEPLYVLEIDSSRNLIVVGEQQHLLKAGLIGADISWI-----IPPP 285 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 F KIR PVP V+ DD V F++++ V GQ VFY D +VLG Sbjct: 286 ATSFNTTCKIRYRHQPVPCRVELLADDQCRVLFDEAQRSVTPGQFVVFYQDD----QVLG 341 Query: 380 GGIISGSKRSDA 391 GG I + ++ Sbjct: 342 GGRIQAACTAEQ 353 >gi|317133301|ref|YP_004092615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ethanoligenens harbinense YUAN-3] gi|315471280|gb|ADU27884.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ethanoligenens harbinense YUAN-3] Length = 363 Score = 439 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 139/367 (37%), Positives = 201/367 (54%), Gaps = 15/367 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 V+ AMSGGVDSSV AALLK G VIG+TL ++ + + SCC+ DV DAR V Sbjct: 9 GKTVLAAMSGGVDSSVTAALLKEQGASVIGITLNVWPEEENPCAR-SCCSVTDVDDARAV 67 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C+ + + HYV + + F+ VI FA+ Y G TP PC+ CN VKF+ +L + AD Sbjct: 68 CNVLGIPHYVLNTQADFKRGVIDYFAAEYLRGRTPNPCIACNARVKFTAMLRKADEFQAD 127 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R G + R D +DQ+Y L+ TQ QL + FP G +K Sbjct: 128 FIATGHYARILRDAG-----GCRLVRAADARKDQTYVLYMLTQTQLGRILFPCGGYEKPQ 182 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R LA+ GL K+DSQD+CF+ +G Y ++ AG+ G+IV +GQ+LGRH+G+ Sbjct: 183 IRALAKAFGLPTFQKTDSQDLCFIGRGGYTGFLRENCAGLLRPGNIVDESGQVLGRHDGV 242 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +TIGQ +GLG + L+V+ +D + V VG +L + + + A Sbjct: 243 YRFTIGQHKGLGAFSEKKLYVLSIDAARAEVRVGENAALFAAGALVGGTH----RILPGA 298 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + DG + KIR + VP + ++G + + F++ + V GQA VFY D+ VL Sbjct: 299 LEDGARVQAKIRYNAPAVPATLHTVENGALRLLFDEPQRAVTPGQAAVFYDGDT----VL 354 Query: 379 GGGIISG 385 GGG I Sbjct: 355 GGGTIER 361 >gi|78047602|ref|YP_363777.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|123585152|sp|Q3BTY6|MNMA_XANC5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|78036032|emb|CAJ23723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 378 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 126/386 (32%), Positives = 183/386 (47%), Gaps = 31/386 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+V+ +SGGVDSSV A L + G + G+ +Q + A G C A D DA VC Sbjct: 5 RIVLGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + N V F + YAAG TP P V CNR VKF L + LGA+ + Sbjct: 61 VLGIPFHFRDFSGEYWNGVFAHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + G R + R D +DQSYFL Q QL FP+GD++K ++R Sbjct: 121 ATGHYAQVAHRGG-----RWRLLRGADRGKDQSYFLHQLGQAQLAATLFPIGDLEKSTLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A++ GL K DS ICF+ + + + + R A G+I GQ + H G+ Sbjct: 176 RIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARAGEIRDPQGQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313 +T+GQR GL + P +VV D ++ + V L+ + + +W+ Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 F C + R Q P V DDG V V FE+ + V GQ+ V Y + Sbjct: 294 A----PPARRFTCTAQTRYRQPDEPCTVDVQDDGSVQVRFERPQRAVTPGQSLVLYDGE- 348 Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398 LGG +I+ + DA E L+ Sbjct: 349 ---ECLGGAVIAAT---DAPLERQLA 368 >gi|262165401|ref|ZP_06033138.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio mimicus VM223] gi|262025117|gb|EEY43785.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio mimicus VM223] Length = 335 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 103/346 (29%), Positives = 171/346 (49%), Gaps = 26/346 (7%) Query: 49 GVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSY 108 G+ ++ + + C A +D+ DA+ VCD + + + ++ + + V F + Y Sbjct: 3 GLFMKNWEEDDNEE---YCTAAEDLADAQAVCDKLGIPLHTINFAAEYWDNVFEYFLAEY 59 Query: 109 AAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPM 167 AG TP P + CN+ +KF L + L AD +A GHY+R + M R + Sbjct: 60 KAGRTPNPDILCNKEIKFKAFLEFADEVLDADYIAMGHYVRRTF---PQNGEKPQMLRGL 116 Query: 168 DLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGK 227 D +DQSYFL+ + +Q+ FP+GD++K VR +A E GL A K DS ICF+ + K Sbjct: 117 DNNKDQSYFLYTLSHEQVARSLFPVGDLEKPEVRRIAEEQGLITAKKKDSTGICFIGERK 176 Query: 228 YFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVY 282 + D + R A G I G+++G H G++ +T+GQR+GL + +P +V Sbjct: 177 FTDFLSRYLP--AQPGKIETPEGKVIGEHQGLMYHTLGQRKGLHIGGMKESNEQPWYVAD 234 Query: 283 LDKNSSRVIV---GPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339 D + +I L+ H + +++W+ + + +C VK R Q + Sbjct: 235 KDLKRNVLIAVQGADHPLLKSHGLVAAQLHWVD----RTPITEPLRCSVKTRYRQSDIAC 290 Query: 340 F-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + +DD + V F++ +V V GQ+ VFY + LGGGII Sbjct: 291 TIIPLSDDRIKVMFDEPQVAVTPGQSAVFYQGEI----CLGGGIIE 332 >gi|257458053|ref|ZP_05623212.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Treponema vincentii ATCC 35580] gi|257444766|gb|EEV19850.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Treponema vincentii ATCC 35580] Length = 358 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 138/366 (37%), Positives = 199/366 (54%), Gaps = 17/366 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ V +SGGVDS+VVA LL G++V GVTL++ N + ++ S + + +A + Sbjct: 1 MKIAVGLSGGVDSTVVAKLLMEQGHEVCGVTLRVLNEKNPVAKEQS---ERIIGEAAQAA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + H V+D+ F+ +I F SY GETP PC CN+ +KF LL Q G D Sbjct: 58 RILGIPHRVYDFRAEFQTHIIDYFIQSYCNGETPNPCYICNKQIKFGLLLERALQEGCDA 117 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + V + R ++ R +D ++DQSYFL +Q+QL FPL ++ K V Sbjct: 118 VATGHYAK----VFQESSGRYVLERGVDAQKDQSYFLALLSQEQLSRTLFPLAELTKPEV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A KSDSQDICFV G Y V++ +GD + +NG +G H G+ Sbjct: 174 RLIAEKAGLVNAHKSDSQDICFVPDGDYTAVIEAFAPDAFPQGDFIDMNGIKVGTHRGLH 233 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQRRGL + G P++VV + V V P L ++R++NW+ + Sbjct: 234 RYTIGQRRGLALPFGYPIYVVEKSAEHNTVTVAPENGLFAAACFVRDVNWIA-----EIP 288 Query: 321 VDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + F VK R Q ++ D+ V + F + E VA GQA VFY +RVLG Sbjct: 289 NEPFYAEVKTRYRQQLKKARIEPIGDNRVRIVFTEPERAVARGQAAVFYRG----SRVLG 344 Query: 380 GGIISG 385 GGII Sbjct: 345 GGIIDS 350 >gi|103487513|ref|YP_617074.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sphingopyxis alaskensis RB2256] gi|123379667|sp|Q1GRI1|MNMA_SPHAL RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|98977590|gb|ABF53741.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sphingopyxis alaskensis RB2256] Length = 382 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 193/380 (50%), Positives = 248/380 (65%), Gaps = 18/380 (4%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L KD R+VVAMSGGVDSSVVAAL R G +VIGVTLQLY+ +KR G+CCAGQ Sbjct: 20 FQLAGPMKDRRIVVAMSGGVDSSVVAALAARSGAEVIGVTLQLYDHGAKAKRVGACCAGQ 79 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DAR V D + H+V D+E RFR+ VI FA Y AG TP+PCV CN VKF+DL Sbjct: 80 DIRDARAVADRLGFVHHVHDHESRFRDTVIDQFADEYLAGRTPIPCVRCNMGVKFTDLFQ 139 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + R+LGAD LATGHY+R +G DG M R +D RDQSYFLFATTQ+QL LRFP Sbjct: 140 LARELGADCLATGHYVRR--VMGPDGAE---MHRAVDPARDQSYFLFATTQEQLDFLRFP 194 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG ++K VR++AR++GL +A K DSQDICFV G Y +V+++ +GDIVH++G Sbjct: 195 LGGLEKNVVREIARDLGLGVAGKPDSQDICFVPDGDYASLVRKLRPEAEDQGDIVHVDGT 254 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 +LG H G+I+YT+GQRRG+ + EPL+VV L+ + +VIVGPR +L V L + NW Sbjct: 255 VLGAHKGLIHYTVGQRRGIDIGGQAEPLYVVRLNAATKQVIVGPRRALAVSGARLGDANW 314 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 L D V+G K+RS PVP V N + F E GVA GQA V Y + Sbjct: 315 LAD-------VEGRDVLAKVRSMAKPVPARVTAN----RLRFLSPEYGVAPGQAAVLYDA 363 Query: 371 DSNEARVLGGGIISGSKRSD 390 ++++RVLGGG I + ++ Sbjct: 364 -ADKSRVLGGGWIEETFTAE 382 >gi|114794425|pdb|2HMA|A Chain A, The Crystal Structure Of Trna (5-Methylaminomethyl-2- Thiouridylate)-Methyltransferase Trmu From Streptococcus Pneumoniae Length = 376 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 121/369 (32%), Positives = 175/369 (47%), Gaps = 25/369 (6%) Query: 36 VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEER 95 A LLK GYDVIG+ + ++ + G C A +D D V D I + +Y ++E+ Sbjct: 25 TALLLKEQGYDVIGIFXKNWDD---TDENGVCTATEDYKDVVAVADQIGIPYYSVNFEKE 81 Query: 96 FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGD 155 + + V F + Y AG TP P V CN+ +KF L LGAD +ATGHY R V Sbjct: 82 YWDRVFEYFLAEYRAGRTPNPDVXCNKEIKFKAFLDYAITLGADYVATGHYAR----VAR 137 Query: 156 DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKS 215 D R +D +DQ+YFL +Q+QL FPLG ++K VR LA E GL A K Sbjct: 138 DEDGTVHXLRGVDNGKDQTYFLSQLSQEQLQKTXFPLGHLEKPEVRRLAEEAGLSTAKKK 197 Query: 216 DSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM- 274 DS ICF+ + + + + A G ++G+ G H G+ YTIGQR GLG+ Sbjct: 198 DSTGICFIGEKNFKNFLSNYLP--AQPGRXXTVDGRDXGEHAGLXYYTIGQRGGLGIGGQ 255 Query: 275 ----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCF 327 P FVV D + + + VG +SL + ++++ + E +C Sbjct: 256 HGGDNAPWFVVGKDLSKNILYVGQGFYHDSLXSTSLEASQVHFTREXPEE----FTLECT 311 Query: 328 VKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387 K R Q V V + V F + + + GQA VFY + LGGG+I + Sbjct: 312 AKFRYRQPDSKVTVHVKGEKTEVIFAEPQRAITPGQAVVFYDGE----ECLGGGLIDNAY 367 Query: 388 RSDAVEESL 396 R V + + Sbjct: 368 RDGQVCQYI 376 >gi|289666030|ref|ZP_06487611.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 378 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 182/386 (47%), Gaps = 31/386 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+VV +SGGVDSSV A L + G + G+ +Q + A G C A D DA VC Sbjct: 5 RIVVGVSGGVDSSVAAWKLAQQGEQIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + + V F + YAAG TP P V CNR VKF L + LGA+ + Sbjct: 61 VLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + G R + R D +DQSYFL Q QL FP+GD++K ++R Sbjct: 121 ATGHYAQVAHRGG-----RWRLLRGADRGKDQSYFLHQLGQTQLAATLFPIGDLEKSTLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 A++ GL K DS ICF+ + + + + R A G+I GQ + H G+ Sbjct: 176 RTAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313 +T+GQR GL + P +VV D S+ + V L+ + + +W+ Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 F C + R Q P V DDG V V FE+ + V GQ+ V Y + Sbjct: 294 A----PPARRFSCTAQTRYRQPDEPCTVDVQDDGSVKVHFERPQRAVTPGQSLVLYDGE- 348 Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398 LGG +I+ + DA E L+ Sbjct: 349 ---ECLGGAVIAAT---DAPLERQLA 368 >gi|254994811|ref|ZP_05277001.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (trmU) [Anaplasma marginale str. Mississippi] Length = 379 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 180/384 (46%), Positives = 245/384 (63%), Gaps = 15/384 (3%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 MV + L+ L K P++ VVVAMSGGVDSSVVAALL GY VIG T+QL++S A Sbjct: 1 MVFDGSLNLDPLVSGKPPEETTVVVAMSGGVDSSVVAALLHERGYKVIGATMQLHSSSPA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 S K SCC D+YDA+RV T+ HYV DYEE FR VI F +SY GETP+PCV C Sbjct: 61 SGAK-SCCGSVDIYDAKRVASTLGFPHYVLDYEEVFRREVIDDFINSYKRGETPIPCVKC 119 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N+TVKF D+L R +G DV+ATGHY+R G+ + R D ++DQSYFLF+ Sbjct: 120 NQTVKFRDMLKAARAIGGDVVATGHYVRRVEIAGEQ-----QILRGKDPQKDQSYFLFSV 174 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 T +QL LRFPLGD+ K +VR LA+++ L++ADK DSQDICFV + Y +V++ ++ Sbjct: 175 TSEQLKFLRFPLGDLAKSNVRLLAQQLNLEVADKPDSQDICFVPENSYREVLRNLDPASV 234 Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300 +G IVH++G++LG H+GI N+T+GQRRGL ++ PL+VV LD + V+VGP+ +L Sbjct: 235 KKGKIVHVDGRLLGEHDGISNFTVGQRRGLNISAPYPLYVVRLDAAQNAVVVGPQSALMK 294 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGV 359 ++++ +NWL D + G ++RSS V + + DG V E+ V V Sbjct: 295 RALFVKNLNWLPD---YNIPKRGLAVDARLRSSGATVRATITSDGDGYGTVVLEEDCV-V 350 Query: 360 ASGQACVFYTSDSNEARVLGGGII 383 + GQACV Y + R+LGGG I Sbjct: 351 SPGQACVLYDKE----RLLGGGWI 370 >gi|325107944|ref|YP_004269012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Planctomyces brasiliensis DSM 5305] gi|324968212|gb|ADY58990.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Planctomyces brasiliensis DSM 5305] Length = 370 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 144/382 (37%), Positives = 202/382 (52%), Gaps = 31/382 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--------YNSRKA------SKRKGSC 67 RVV+AMSGGVDSS A LL+ GY+VIG+ ++ + A K C Sbjct: 4 RVVLAMSGGVDSSAAAHLLQEQGYEVIGLFMRSGVNEETCSLDDPNALPVINLKAHKQGC 63 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 C+ D DARRV D +++ + ++++ F + FA Y AG TP PCV CN +KF Sbjct: 64 CSASDAADARRVADELDIPFHALNFQDAF-GRIKDYFADEYLAGRTPNPCVQCNNWLKFG 122 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 L +Q+GA +A+GHY R G+ + R +D +DQSY LF L Sbjct: 123 KLWEFAQQVGATKIASGHYARITEQDGE-----YHLERGLDPGKDQSYVLFGIRPDLLPH 177 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 + FP+G +K +R++A E GL ADK DSQ+ICF+ Y V+R +G V+ Sbjct: 178 ILFPVGGFQKGEIREMAGEAGLRTADKKDSQEICFIPDNDYAGFVRRYRGEQETKGQFVN 237 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 G+ LG H G ++TIGQRRGLG+A G P FV+ + + V++G + L + Sbjct: 238 TAGESLGEHRGYEHFTIGQRRGLGMAFGTPHFVLEIRPETCEVVLGSYDELGRTGLRADR 297 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366 +NWL + V D F+C +IR P V+R D D V V F++ + GVA GQA V Sbjct: 298 MNWLAN------VGDEFRCTAQIRYQHRPAACTVRRLDNDQVEVHFDEPQHGVAPGQAFV 351 Query: 367 FYTSDSNEARVLGGGIISGSKR 388 Y D RVLGGG I+ S + Sbjct: 352 CYDGD----RVLGGGWITESFQ 369 >gi|71083529|ref|YP_266248.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Pelagibacter ubique HTCC1062] gi|91762051|ref|ZP_01264016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Pelagibacter ubique HTCC1002] gi|123646720|sp|Q4FME4|MNMA_PELUB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71062642|gb|AAZ21645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Pelagibacter ubique HTCC1062] gi|91717853|gb|EAS84503.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Pelagibacter ubique HTCC1002] Length = 371 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 176/379 (46%), Positives = 251/379 (66%), Gaps = 9/379 (2%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 T+LNS+ + K+PKD V+VAMSGGVDSS VAA++K +GY+VIG+TL+LYN K + Sbjct: 2 TKLNSIGIAKDPKDTLVIVAMSGGVDSSTVAAMMKNEGYNVIGITLKLYNDSKETASSKQ 61 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 CCAGQD+ DA+RV D + + H + Y+ +F+ VI F SY GETP+PCV CN+TVKF Sbjct: 62 CCAGQDIMDAKRVADKLKIEHKILYYQNKFKEGVIDNFIDSYLNGETPIPCVQCNKTVKF 121 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 +DL ++L AD L TGHY++S + M R +DL RDQSYFLF TT+ QL Sbjct: 122 TDLFEEAKRLNADALVTGHYVKSITEKDN-----TDMYRGIDLNRDQSYFLFNTTKDQLN 176 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 LRFPLG++ K+ R++ARE+ L++ADK DSQDICFV G Y V+++ +G+I Sbjct: 177 FLRFPLGNLLKDETRNIARELDLNVADKPDSQDICFVPNGDYASVIEKFRPNSFSKGNIK 236 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 ++NG+++G H+GIINYTIGQR+G+GV+ PL+VV + + + +IVG +E L +I L+ Sbjct: 237 NMNGEVIGVHDGIINYTIGQRKGIGVSDKNPLYVVKIIADKNEIIVGAKEHLVKTKINLK 296 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 ++N + + D + FVK+RS+ + + ND V+ + E G+A GQACV Sbjct: 297 DLNIITN----DQNDFKNELFVKVRSTGRLIKAKIDINDTNANVNLLEEEHGIAPGQACV 352 Query: 367 FYTSDSNEARVLGGGIISG 385 FY ++N +VLGGG I Sbjct: 353 FYAKNNNGYKVLGGGWIKS 371 >gi|325915390|ref|ZP_08177707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xanthomonas vesicatoria ATCC 35937] gi|325538437|gb|EGD10116.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xanthomonas vesicatoria ATCC 35937] Length = 378 Score = 438 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 130/393 (33%), Positives = 186/393 (47%), Gaps = 33/393 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+VV +SGGVDSSV A L + G + G+ +Q + A G C A D DA VC Sbjct: 5 RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + + V F + YAAG TP P V CNR VKF L + LGA+ + Sbjct: 61 VLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + G R + R D +DQSYFL Q QL FP+GD++K ++R Sbjct: 121 ATGHYAQVAYRGG-----RWRLLRGADRGKDQSYFLHQLGQTQLAATVFPIGDLEKSTLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A++ GL K DS ICF+ + + + + R A G+I GQ + H G+ Sbjct: 176 RIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIADHPGVFY 233 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313 +T+GQR GL + P +VV D S+ + V L+ + + +W+ Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSQWLQSEQAHWVTG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 F C + R Q P V DDG V V FE+ + V GQ+ V Y + Sbjct: 294 A----PPARRFTCTAQTRYRQPDEPCTVDVQDDGSVQVRFERPQRAVTPGQSLVLYDGE- 348 Query: 373 NEARVLGGGIISGSKRSDAVEESLLSVIGDEFP 405 LGG +I+ + DA E L+ G FP Sbjct: 349 ---ECLGGAVIAAT---DAPLERQLA--GSSFP 373 >gi|27904738|ref|NP_777864.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29428172|sp|P59460|MNMA_BUCBP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|27904135|gb|AAO26969.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 370 Score = 438 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 127/376 (33%), Positives = 194/376 (51%), Gaps = 26/376 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + +V+VAMSGGVDSSV A +LK+ GY V G+ ++ + S C + +D+ DA+ V Sbjct: 5 NKKVIVAMSGGVDSSVTAWILKKKGYHVEGLFMKNWEEH-NSDSDMHCSSKKDLSDAQGV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGA 138 C+ +N+ + ++ + V F Y G TP P V CN+ +KF + + L A Sbjct: 64 CNQLNIFLHKVNFSFEYWENVFQKFLFEYKMGRTPNPDVLCNKEIKFKIFFEYSIQDLQA 123 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY++ R++ K + + R +D +DQSYFL+ Q+ L FP+G + K Sbjct: 124 HYIATGHYVQKRIF-----KNKYFLLRGLDATKDQSYFLYTINQKVLKQCLFPIGHLTKC 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +AR + L +A K DS ICF+ + G+I+ GQ +G+H G Sbjct: 179 EVRKIARRINLIVAKKKDSTGICFISPQNIKKFLNHYLPH--KSGNIITTLGQKIGQHYG 236 Query: 259 IINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINW 310 +I+YTIGQRRGLG+ + P +VV D ++ +IV + L + E++W Sbjct: 237 LIHYTIGQRRGLGIGGIKGFNNIPWYVVSKDITNNSLIVSQGMNNFYLMSIGLIANELHW 296 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + D + + F C KIR +P + + + V FE+ E VA GQ+ VFY Sbjct: 297 INDI----NIQNSFFCTAKIRYRHIDIPCKIVMHKKKQIKVLFERPESSVAPGQSVVFYL 352 Query: 370 SDSNEARVLGGGIISG 385 SD LGGGII Sbjct: 353 SD----LCLGGGIIKK 364 >gi|172038551|ref|YP_001805052.1| tRNA-specific 2-thiouridylase MnmA [Cyanothece sp. ATCC 51142] gi|171700005|gb|ACB52986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cyanothece sp. ATCC 51142] Length = 367 Score = 438 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 150/373 (40%), Positives = 204/373 (54%), Gaps = 23/373 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 K +VVV +SGGVDSSV AA L GYDVIG+TL L K KG CC+ V Sbjct: 7 FKKRLTMKKVVVGLSGGVDSSVAAASLHHQGYDVIGLTLWLM------KGKGQCCSEGMV 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA +C+ + V H++ D E F +I S Y +G TPLPC CNR VKF +L+ Sbjct: 61 -DAAFICEQLGVPHHIVDTRELFEANIINYLVSGYESGVTPLPCSQCNRAVKFGPMLAYA 119 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 ++ L D +ATGHY R R D+ RR + R +D +DQSYFL+ +Q L FPL Sbjct: 120 KEELNCDRIATGHYARIRY---DEQTRRYQLLRAIDRNKDQSYFLYDLSQDILKGTIFPL 176 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQ 251 G+ KE R +A E L A K +SQD+C ++ G + + EG+IV L+G+ Sbjct: 177 GEQTKEETRRIAAEFDLKTASKPESQDLCLIEAHGSMASFLDQYIK--PKEGEIVDLDGK 234 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 +LG H GI +YTIGQR+GLG+A EPL+VV LD +RVIVG R + + +NW+ Sbjct: 235 VLGTHQGIHHYTIGQRKGLGIAAPEPLYVVKLDAVMNRVIVGNRAAGGRSDCTVGRLNWV 294 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 + V++R VPV + ++ V + F + + G+ GQA VFY Sbjct: 295 SIAEPSSPIT----VEVQVRYRSKAVPVSIIPIENNRVTLQFNEPQFGITPGQAAVFYDG 350 Query: 371 DSNEARVLGGGII 383 + VLGGGII Sbjct: 351 EI----VLGGGII 359 >gi|146297250|ref|YP_001181021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor saccharolyticus DSM 8903] gi|205814264|sp|A4XLP5|MNMA_CALS8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|145410826|gb|ABP67830.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 361 Score = 438 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 131/370 (35%), Positives = 201/370 (54%), Gaps = 15/370 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK--RKGSCCAGQDVYDAR 77 +V+VAMSGGVDSSV AA+LK +GY+V G T+Q++ + + SCC+ V DAR Sbjct: 2 KKKVLVAMSGGVDSSVAAAILKEEGYEVYGATMQIWQNECGEELITGKSCCSIYAVDDAR 61 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 +V + +++ +YVF+ ++ FR VI F Y G TP PC+ CNR +KF L +G Sbjct: 62 KVANILDIPYYVFNMKDDFRKIVIDYFIDEYIKGRTPNPCIMCNRKIKFELFLKKAIAIG 121 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D +ATGHY + D R ++ R E+DQ+Y L+ TQ+ L FPLG K Sbjct: 122 MDYIATGHYA---IIEYDSSLNRYLLKRSKAKEKDQTYVLYNMTQEMLSKTLFPLGRFSK 178 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + VR LA + L +A K DSQ+ICF+ Y +++ GI +G V G ILG+ Sbjct: 179 DEVRKLAEKFKLPVAKKPDSQEICFIPDNNYGKFIEKET-GIREDGVYVDTEGNILGKSK 237 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 NYTIGQR+GLG++ G+ ++VV + ++V++G + + ++N++ Sbjct: 238 AYYNYTIGQRKGLGISTGKRMYVVAIKPEENKVVLGEEGKIFADALIATDLNFI----PF 293 Query: 318 DAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 D + + KIR + V ++ V V F + + + GQ+ VFY +D Sbjct: 294 DKLESEIEVTAKIRYTAKEAKAKIVPMENNKVLVKFYEKQRAITPGQSVVFYNNDI---- 349 Query: 377 VLGGGIISGS 386 V+GGGII + Sbjct: 350 VVGGGIIEKA 359 >gi|291459813|ref|ZP_06599203.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oribacterium sp. oral taxon 078 str. F0262] gi|291417603|gb|EFE91322.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oribacterium sp. oral taxon 078 str. F0262] Length = 363 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 147/369 (39%), Positives = 201/369 (54%), Gaps = 12/369 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKGSCCAGQDVYDARR 78 + +VAMSGGVDSSV AAL+K GYD IGVT++LY + R GSCC +D DAR+ Sbjct: 2 GKKALVAMSGGVDSSVAAALMKERGYDCIGVTMKLYEKEGGGTCRVGSCCTAEDAEDARQ 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + +YVF++ F VI FA +Y G TP PC+DCNR +K L R+LG Sbjct: 62 AASVLGIPYYVFNFTGDFEREVIRRFAETYLKGGTPNPCIDCNRYMKHRRLYQRARELGF 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197 D +ATGHY R D G+ R ++ + + +DQSY L+ +Q+QL FPLGD K Sbjct: 122 DSIATGHYARVSF---DAGRGRWLLKKARNAAKDQSYVLYFLSQEQLSHSVFPLGDFETK 178 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 E VR+LA ++ A K DSQDICFV +G Y D ++ G+ V G+ILGRH Sbjct: 179 EEVRELAEKLHFLNARKRDSQDICFVTEGDYGDFLESYLGRSFPPGNFVDEEGRILGRHR 238 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI+ YTIGQR+GLG+++ P++V D + V + E L + + NW+ E Sbjct: 239 GIVRYTIGQRKGLGLSLEAPMYVYEKDLLKNEVYLTRGEKLYQKELIADDFNWILYDPSE 298 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + K R VP + DG V V F++ E A GQA V Y ++ Sbjct: 299 --IKGAIPVTAKSRYRAKEVPAEAELLPDGRVRVRFQEPERAPAIGQAIVLYEGEN---- 352 Query: 377 VLGGGIISG 385 V+GGG I Sbjct: 353 VVGGGTIQS 361 >gi|110005181|emb|CAK99508.1| probable trna 5-methylaminomethyl-2-thiouridylate-methyltransferase protein [Spiroplasma citri] Length = 377 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 122/381 (32%), Positives = 190/381 (49%), Gaps = 28/381 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73 +VVV +SGGVDSSV LL++ GYDV G+ ++ ++S+ + G+ C D Sbjct: 2 KKVVVGLSGGVDSSVSLYLLQQAGYDVEGLFMRNWDSQLNNDILGNKAINNMICPQELDY 61 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA V T+ V + D+ + + V F S Y G TP P + CN+ +KF+ L+ Sbjct: 62 NDAVNVSKTLQVPLHRADFIKEYWEYVFKHFISEYQKGRTPNPDILCNKYIKFNYFLNYA 121 Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 AD +A GHY R R ++ + + R +D ++DQ+YFL Q QL FPL Sbjct: 122 INNYHADFIAMGHYARVRF---NEELQEYQLLRGIDRDKDQTYFLSQLNQGQLSKTFFPL 178 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQ 251 G++ K+ VR++A L A+K DS ICF+ + + ++ +G+IV + + Sbjct: 179 GNLTKKEVREIAMTQNLSTANKKDSTGICFIGERDFKIFLQNYIPN--QDGNIVDIETKE 236 Query: 252 ILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLRE 307 ++G HNG++ YTIGQRRGL M EP FV + + + V + L + + Sbjct: 237 VVGHHNGVMYYTIGQRRGLNLGGMSEPYFVAGKNVEKNILYVAKSSEEKWLYSTSCLVTD 296 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366 +NW+ ++ F C K R Q +PV + ND+ V F + + GQA V Sbjct: 297 VNWINTFREKE-----FNCTAKFRYRQKDIPVKITVLNDNKCLVQFATTVKAITPGQASV 351 Query: 367 FYTSDSNEARVLGGGIISGSK 387 FY + LGGG+I+ Sbjct: 352 FYVDEV----CLGGGVINDVY 368 >gi|325927859|ref|ZP_08189083.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xanthomonas perforans 91-118] gi|325541699|gb|EGD13217.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xanthomonas perforans 91-118] Length = 378 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 126/386 (32%), Positives = 182/386 (47%), Gaps = 31/386 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+VV +SGGVDSSV A L + G + G+ +Q + A G C A D DA VC Sbjct: 5 RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + + V F + YAAG TP P V CNR VKF L + LGA+ + Sbjct: 61 VLGIPFHFRDFSGEYWSGVFAHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + G R + R D +DQSYFL Q QL FP+GD++K ++R Sbjct: 121 ATGHYAQVAHRGG-----RWRLLRGADRGKDQSYFLHQLGQAQLAATLFPIGDLEKSALR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A++ GL K DS ICF+ + + + + R A G+I GQ + H G+ Sbjct: 176 RIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARAGEIRDPQGQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313 +T+GQR GL + P +VV D ++ + V L+ + + +W+ Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 F C + R Q P V DDG V V FE+ + V GQ+ V Y Sbjct: 294 A----PPARRFTCTAQTRYRQPDEPCTVDVQDDGSVQVRFERPQRAVTPGQSLVLYDG-- 347 Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398 LGG +I+ + DA E L+ Sbjct: 348 --QECLGGAVIAAT---DAPLERQLA 368 >gi|296535629|ref|ZP_06897808.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseomonas cervicalis ATCC 49957] gi|296264053|gb|EFH10499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseomonas cervicalis ATCC 49957] Length = 368 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 187/379 (49%), Positives = 238/379 (62%), Gaps = 21/379 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR+VVAMSGGVDSSVVA LLK G++VIG TLQLY+ A ++KG+CCAGQD++DAR V Sbjct: 1 MRIVVAMSGGVDSSVVAGLLKEQGHEVIGATLQLYDHGAAIEKKGACCAGQDIHDARDVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + HYV D E RFR+AVI FA +YA GETP+PCV CN+TVKF DL+ + R LGAD Sbjct: 61 DRLGIPHYVLDRERRFRDAVIEDFAEAYARGETPIPCVRCNQTVKFQDLVELARDLGADA 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199 LATGHY+R +G+ + R D RDQSYFLFATT+ QL RFPLGD K Sbjct: 121 LATGHYVRR-----TEGEAGAELRRAADPARDQSYFLFATTRAQLEFCRFPLGDYTSKAE 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A +GL +A+K DSQDICFV QGKY D+V ++ EG I H++G++LG H G+ Sbjct: 176 VRAEALRLGLAVAEKPDSQDICFVPQGKYADLVAKLRPEAVAEGSIEHVDGRVLGTHKGV 235 Query: 260 INYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 YT+GQ RGLG+A EPL+V LD RV+V PR +L + + E+NWL Sbjct: 236 ARYTVGQGRGLGMASRDGEEPLYVTALDPARKRVVVAPRGALASPEVLVGEVNWL----- 290 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDSNE 374 DA C VK+R+ + P P + + V E+ + A GQ CV Y D Sbjct: 291 IDAPAVPLPCQVKLRAREMPQPAIAHWQPESGLLRVVLEQPAIA-APGQGCVLYDGD--- 346 Query: 375 ARVLGGGIISGSKRSDAVE 393 RVLGGG I + ++ E Sbjct: 347 -RVLGGGFIRRATQAIDSE 364 >gi|205814656|sp|B1X0U7|MNMA_CYAA5 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 355 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 149/366 (40%), Positives = 203/366 (55%), Gaps = 23/366 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VVV +SGGVDSSV AA L GYDVIG+TL L K KG CC+ V DA +C Sbjct: 2 KKVVVGLSGGVDSSVAAASLHHQGYDVIGLTLWLM------KGKGQCCSEGMV-DAAFIC 54 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139 + + V H++ D E F +I S Y +G TPLPC CNR VKF +L+ ++ L D Sbjct: 55 EQLGVPHHIVDTRELFEANIINYLVSGYESGVTPLPCSQCNRAVKFGPMLAYAKEELNCD 114 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R D+ RR + R +D +DQSYFL+ +Q L FPLG+ KE Sbjct: 115 RIATGHYARIRY---DEQTRRYQLLRAIDRNKDQSYFLYDLSQDILKGTIFPLGEQTKEE 171 Query: 200 VRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R +A E L A K +SQD+C ++ G + + EG+IV L+G++LG H G Sbjct: 172 TRRIAAEFDLKTASKPESQDLCLIEAHGSMASFLDQYIK--PKEGEIVDLDGKVLGTHQG 229 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I +YTIGQR+GLG+A EPL+VV LD +RVIVG R + + +NW+ Sbjct: 230 IHHYTIGQRKGLGIAAPEPLYVVKLDAVMNRVIVGNRAAGGRSDCTVGRLNWVSIAEPSS 289 Query: 319 AVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + V++R VPV + ++ V + F + + G+ GQA VFY + V Sbjct: 290 PIT----VEVQVRYRSKAVPVSIIPIENNRVTLQFNEPQFGITPGQAAVFYDGEI----V 341 Query: 378 LGGGII 383 LGGGII Sbjct: 342 LGGGII 347 >gi|294625260|ref|ZP_06703899.1| tRNA 5-methylaminomethyl-2-thiouridylate -methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292600434|gb|EFF44532.1| tRNA 5-methylaminomethyl-2-thiouridylate -methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 378 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 125/386 (32%), Positives = 182/386 (47%), Gaps = 31/386 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+VV +SGGVDSSV A L + G + G+ +Q + A G C A D DA VC Sbjct: 5 RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + + V F + YAAG TP P V CNR VKF L + LGA+ + Sbjct: 61 LLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + G R + R D +DQSYFL Q QL FP+GD++K ++R Sbjct: 121 ATGHYAQVAHRGG-----RWRLLRGADRGKDQSYFLHQLGQTQLAATLFPIGDLEKSTLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A++ GL K DS ICF+ + + + + R A G+I GQ + H G+ Sbjct: 176 RIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313 +T+GQR GL + P +VV D ++ + V L+ + + +W+ Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 F C + R Q V DDG V V FE+ + V GQ+ V Y + Sbjct: 294 A----PPARRFSCTAQTRYRQPDEHCTVDVQDDGSVQVRFERPQRAVTPGQSLVLYDGE- 348 Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398 LGG +I+ + DA E L+ Sbjct: 349 ---ECLGGAVIAAT---DAPLERQLA 368 >gi|148244833|ref|YP_001219527.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Vesicomyosocius okutanii HA] gi|166235089|sp|A5CW80|MNMA_VESOH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|146326660|dbj|BAF61803.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Candidatus Vesicomyosocius okutanii HA] Length = 362 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 113/379 (29%), Positives = 180/379 (47%), Gaps = 27/379 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K+ +++V +SGGVDSSV A LL + GY V + ++ + + C A QD+ Sbjct: 1 MKNLNKNTKIIVGLSGGVDSSVTALLLLKQGYQVEALFMKNWEEDDKGR---YCSAKQDL 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ + + +++ + ++ + N V F Y G TP P + CN+ +KF L Sbjct: 58 SDAQNITNKLSIKLHTINFSVDYWNDVFTHFLKEYKKGRTPNPDILCNQKIKFGAFLKHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY R G + +D +DQSYFL +Q QL FPLG Sbjct: 118 ISLGADKIATGHYARIAKKNGT-----YQLKTGLDNNKDQSYFLHLLSQYQLSKSLFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 + K VR++A E G A K DS ICF+ + K+ + + +G+IV GQ + Sbjct: 173 ETNKIDVRNIATENGFVTAKKKDSTGICFIGERKFSEFLATYLPK--QQGNIVGEQGQFI 230 Query: 254 GRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIV--GPRESLEVHRIYLR 306 H G+ YTIGQR+GL + G+P FV + ++V G L + Sbjct: 231 KHHQGLAFYTIGQRKGLEIGGGFGKSGKPWFVADKCIERNELVVVQGDHTLLYYQTLNTS 290 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365 + W+ C KIR Q + ++++ + + F++ + + GQ+ Sbjct: 291 KPYWIN-----TPPTLPMTCNAKIRYRQQSQSCMISQDNNKQLKIIFKQPQRAITPGQSI 345 Query: 366 VFYTSDSNEARVLGGGIIS 384 VFY +++ LGG II Sbjct: 346 VFYDNET----CLGGAIIE 360 >gi|294666592|ref|ZP_06731831.1| tRNA 5-methylaminomethyl-2-thiouridylate -methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292603612|gb|EFF47024.1| tRNA 5-methylaminomethyl-2-thiouridylate -methyltransferase [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 378 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 125/386 (32%), Positives = 182/386 (47%), Gaps = 31/386 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+VV +SGGVDSSV A L + G + G+ +Q + A G C A D DA VC Sbjct: 5 RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + + V F + YAAG TP P V CNR VKF L + LGA+ + Sbjct: 61 VLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + G R + R D +DQSYFL Q QL FP+GD++K ++R Sbjct: 121 ATGHYAQVAHRGG-----RWRLLRGADRGKDQSYFLHQLGQTQLAATLFPIGDLEKSTLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A++ GL K DS ICF+ + + + + R A G+I GQ + H G+ Sbjct: 176 RIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313 +T+GQR GL + P +VV D ++ + V L+ + + +W+ Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVANNVLYVDQDRDSPLLQSRWLQSEQTHWVTG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 F C + R Q V DDG V V FE+ + V GQ+ V Y + Sbjct: 294 A----PPARRFSCTAQTRYRQPDEHCTVDVQDDGSVQVRFERPQRAVTPGQSLVLYDGE- 348 Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398 LGG +I+ + DA E L+ Sbjct: 349 ---ECLGGAVIAAT---DAPLERQLA 368 >gi|309775351|ref|ZP_07670356.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erysipelotrichaceae bacterium 3_1_53] gi|308916868|gb|EFP62603.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erysipelotrichaceae bacterium 3_1_53] Length = 386 Score = 438 bits (1126), Expect = e-120, Method: Composition-based stats. Identities = 122/384 (31%), Positives = 190/384 (49%), Gaps = 29/384 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73 +V++ +SGGVDS+V A LLK GYDV ++ ++S + G+ C QD Sbjct: 3 QKVLLGLSGGVDSAVAAYLLKEQGYDVTCAFMRNWDSFANNDIMGNPTIQDDVCPQEQDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ V D + + D+ + + + V F Y G TP P + CN+ +KF ++ Sbjct: 63 LDAKEVADRLGLPLLRVDFVKEYWDHVFTYFLDEYRKGRTPNPDILCNKYIKFDAFMNYA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 R+LG DVLATGHY + D + M R D +DQ+YFL +Q L FP+G Sbjct: 123 RKLGFDVLATGHYAQV-----DHSGKESRMLRGADSNKDQTYFLCQVSQDALRHSMFPIG 177 Query: 194 DMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-Q 251 M+K VR++A M L ++ K DS ICF+ + + + +K + +GDI+ + + Sbjct: 178 HMEKHEVREIAERMELNSVSKKKDSTGICFIGERNFKEFLKNYLP--SQDGDIMDIETLE 235 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307 +GRH G++ YTIGQR+GLG+ P FVV D + + V + L + Sbjct: 236 TIGRHGGVLYYTIGQRKGLGIGGNRGPWFVVGKDVQKNILYVTNGSESDWLYSDSCIVSG 295 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366 +NW + + +V C K R Q V ++ D+ VYV + + V +GQ V Sbjct: 296 VNWFSENKPQGELV----CTAKFRYRQPDNDVILRFIDNTTVYVRYPQLVSSVTAGQEAV 351 Query: 367 FYTSDSNEARVLGGGIISGSKRSD 390 FY ++ LGGG+I + Sbjct: 352 FYQNE----ECLGGGVIEDVFKEG 371 >gi|160896253|ref|YP_001561835.1| tRNA-specific 2-thiouridylase MnmA [Delftia acidovorans SPH-1] gi|205816627|sp|A9BS40|MNMA_DELAS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|160361837|gb|ABX33450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Delftia acidovorans SPH-1] Length = 372 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 124/382 (32%), Positives = 185/382 (48%), Gaps = 32/382 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVVV +SGGVDS+V A LLK+ G++V+G+ ++ + S+ C + D DA V Sbjct: 3 KHRVVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSE---YCSSNVDFVDAAAV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + ++ +++ V F Y AG TP P V CN +KF L +LGA+ Sbjct: 60 ADVVGIEIEHVNFASEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAE 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R + + + +D +DQSYFL Q QL FP+G++KK Sbjct: 120 KIATGHYARVRQNPD---TQLFELLKGLDPAKDQSYFLHRLNQAQLSRSMFPVGELKKTE 176 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E+GL A K DS ICF+ + + D + R + G+I+ + LG+H G+ Sbjct: 177 VRRIAEEIGLPNAKKKDSTGICFIGERPFRDFLNRYISKE--PGNILDDRNRKLGKHVGL 234 Query: 260 INYTIGQRRGLGVAM------------GEPLFVVYL--DKNSSRVIVGP-RESLEVHRIY 304 YT+GQR GLG+ +P FV D N+ RV+ G L + Sbjct: 235 SFYTLGQRSGLGIGGVKEKGAPRGGGDHDPWFVARKELDTNTLRVVQGHDHPWLLSQSLL 294 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQ 363 +++W+ A +G K R Q P + +G +DF + + V GQ Sbjct: 295 ADQVSWVAGH----APAEGKAYGSKTRYRQPDSPALISGATPEGFRLDFPEPQWAVTPGQ 350 Query: 364 ACVFYTSDSNEARVLGGGIISG 385 + V Y D LGGGII+ Sbjct: 351 SAVLYDGDV----CLGGGIIAA 368 >gi|75910268|ref|YP_324564.1| tRNA-specific 2-thiouridylase MnmA [Anabaena variabilis ATCC 29413] gi|123608374|sp|Q3M5R7|MNMA_ANAVT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|75703993|gb|ABA23669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anabaena variabilis ATCC 29413] Length = 352 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 145/367 (39%), Positives = 207/367 (56%), Gaps = 23/367 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VVV +SGGVDSS AA+L GY+VIG+TL L K KG CC+ + DA +C Sbjct: 2 KKVVVGLSGGVDSSTAAAILHNQGYEVIGLTLWLM------KGKGQCCSEGMI-DAAYIC 54 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139 + + + H V D + F+ ++ + Y AG TPLPC CN+TVKF ++ R+ LG D Sbjct: 55 EQLGIPHEVVDMRDVFQTHIVDYLVTGYGAGITPLPCSQCNKTVKFGPMVQYAREQLGCD 114 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R D+ R + R +D +DQSYFL+ +Q L FPLG+M+K Sbjct: 115 RIATGHYARISY---DEASGRYQLLRAVDRNKDQSYFLYDLSQDLLAASLFPLGEMEKAD 171 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R +A E GL ADK +SQD+C V+ G + + A +GDIV G+ILG+H+G Sbjct: 172 TRRIATEHGLKTADKPESQDLCLVESNGSMRAFLDKYIA--PKKGDIVDTAGKILGQHDG 229 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 + +YTIGQR+GLG+A EPL+VV LD +++V+VG R + +NW+ Sbjct: 230 VHHYTIGQRKGLGIAAPEPLYVVELDAVNNKVVVGDRTKATQEECTVSRVNWVSI----P 285 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + V+IR P PV V ++ V + F++ + + GQA V+Y D +V Sbjct: 286 EPSTPIRAAVQIRYRSAPEPVTVIPLENSRVRLVFDEPQFSITPGQAAVWYDGD----KV 341 Query: 378 LGGGIIS 384 LGGGII Sbjct: 342 LGGGIIE 348 >gi|305667726|ref|YP_003864013.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Maribacter sp. HTCC2170] gi|88709776|gb|EAR02009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Maribacter sp. HTCC2170] Length = 396 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 119/401 (29%), Positives = 190/401 (47%), Gaps = 43/401 (10%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+ +SGGVDSSV A LLK GY+VIG+ ++ ++ + + C +D DA V Sbjct: 2 KKVVIGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVTISE-ECPWLEDSNDALIVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + D ++ ++ + Y G TP P V CNR +KF L + QLGAD Sbjct: 61 EKLGIPFQTVDLSVEYKERIVDYMFNEYERGRTPNPDVLCNREIKFDVFLKIALQLGADY 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R V D G+ + D +DQSYFL +Q+QL FP+G++ K V Sbjct: 121 VATGHYCRKGTLVNDKGEETFQLLSGKDDNKDQSYFLCQLSQEQLSKTLFPIGNLTKPEV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVV---------------------------- 232 R +A + L ADK DSQ +CF+ + + + + Sbjct: 181 RQIAADNALITADKKDSQGLCFIGKVRLPEFLQQKLKPKKGVIVEVPSTIEEYQHQVPSF 240 Query: 233 ---KRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGL-GVAMGEPLFVVYLDKNSS 288 + + + + V +G+I+G H G +T GQR+GL EPLFV+ D + + Sbjct: 241 SNKEEELSFYSQKPKYVITDGKIVGEHQGAHYFTKGQRKGLDVGGTKEPLFVIDTDVDEN 300 Query: 289 RVIVGP---RESLEVHRIYLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR 343 + G L +++ E++W+ L V + + +IR Q + + Sbjct: 301 VIYTGQGKSHPGLYRRTLFVTNAELHWVRSDLAL-KVDESMEVMARIRYRQALQKATIYK 359 Query: 344 NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 D G+YVDFE+ + + GQ +Y D ++G G+IS Sbjct: 360 IDSGLYVDFEEKQSAITEGQFVAWYLDD----ELIGSGVIS 396 >gi|186685498|ref|YP_001868694.1| tRNA-specific 2-thiouridylase MnmA [Nostoc punctiforme PCC 73102] gi|205816898|sp|B2J5L9|MNMA_NOSP7 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|186467950|gb|ACC83751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nostoc punctiforme PCC 73102] Length = 351 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 142/367 (38%), Positives = 208/367 (56%), Gaps = 23/367 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VVV +SGGVDSS AA+L GY+VIG+TL L K KG CC+ + DA +C Sbjct: 2 KKVVVGLSGGVDSSTAAAILHHQGYEVIGLTLWLM------KGKGQCCSEGMI-DAADLC 54 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139 + + V H + D + F+ ++ + Y+AG TPLPC CN+TVKF ++ R+ LG D Sbjct: 55 EQLGVPHQIVDIRDLFQTHIVDYLVTGYSAGITPLPCSQCNKTVKFGPMVQYAREELGCD 114 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R D+ R + R +D +DQSYFL+ +Q L FPLG+++K Sbjct: 115 RIATGHYARISY---DEATGRYQLLRAIDRNKDQSYFLYDLSQDLLAATIFPLGELEKTD 171 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R +A E GL ADK +SQD+C V+ G + + A GDIV G+ILG+H+G Sbjct: 172 TRRIATEYGLKTADKPESQDLCLVESNGSMRAFLDKYLA--PKSGDIVDTTGKILGQHDG 229 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 + +YTIGQR+GLG+A EPL+V+ LD +++V+VG R + + +NW+ Sbjct: 230 VHHYTIGQRKGLGIAAAEPLYVIELDAENNKVVVGDRTKVTQPECTVNRVNWVSIAEPST 289 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + V+IR P PV V ++ V + F++ + + GQA V+Y + +V Sbjct: 290 PI----HAEVQIRYRSTPTPVTVIPLENSRVRLVFDEPQFSITPGQAAVWYDGE----KV 341 Query: 378 LGGGIIS 384 LGGGII Sbjct: 342 LGGGIIE 348 >gi|71274784|ref|ZP_00651072.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xylella fastidiosa Dixon] gi|71901076|ref|ZP_00683185.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xylella fastidiosa Ann-1] gi|170729970|ref|YP_001775403.1| tRNA-specific 2-thiouridylase MnmA [Xylella fastidiosa M12] gi|205828985|sp|B0U6Q7|MNMA_XYLFM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71164516|gb|EAO14230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xylella fastidiosa Dixon] gi|71729158|gb|EAO31280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xylella fastidiosa Ann-1] gi|167964763|gb|ACA11773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xylella fastidiosa M12] Length = 379 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 118/374 (31%), Positives = 180/374 (48%), Gaps = 28/374 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R++VAMSGGVDSSV A L + G+ ++ + G C A +D DA VC Sbjct: 5 RIIVAMSGGVDSSVAAWRLNSQREAIAGLFMRNWTDDGN----GQCHAEEDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + ++ + D+ + V F + YA G TP P V CNR +KF L R+LGAD + Sbjct: 61 ILGIAFHFRDFSHEYWQEVFTHFLAEYANGRTPNPDVLCNREIKFKHFLETARELGADRI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R Y ++R + R D +DQSYFL Q+QL FP+GD++K+ +R Sbjct: 121 ATGHYARIEHY-----RQRWHLLRGADRSKDQSYFLHQLGQEQLAATLFPIGDLEKQQLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA + GL K DS ICF+ + + + +K+ A G+I Q + H G+ Sbjct: 176 QLAHQTGLPTHAKKDSTGICFIGERNFREFLKQYLP--AQPGEIRDPQEQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313 +T+GQR+GL + P +V+ D ++ + V L+ + +W+ Sbjct: 234 FTLGQRQGLNIGGVRNRPPSPWYVIGKDLATNVLYVDQHRDSPFLQSRWLRSEPAHWVSG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 F C + R Q P V +DG + VDF +++ V GQ+ V Y + Sbjct: 294 S----PPAHTFTCTAQTRYRQADEPCKVTVRNDGSLDVDFTRTQWAVTPGQSLVLYDGN- 348 Query: 373 NEARVLGGGIISGS 386 LGG +I+ + Sbjct: 349 ---ECLGGAVIATT 359 >gi|160915329|ref|ZP_02077542.1| hypothetical protein EUBDOL_01338 [Eubacterium dolichum DSM 3991] gi|158433128|gb|EDP11417.1| hypothetical protein EUBDOL_01338 [Eubacterium dolichum DSM 3991] Length = 387 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 115/381 (30%), Positives = 194/381 (50%), Gaps = 29/381 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72 +V++ +SGGVDS+V A LLK GYDV ++ +++ + G+ C QD Sbjct: 3 KQKVLLGLSGGVDSAVAAYLLKEAGYDVTCAFMRNWDAYANNDILGNPTISNEVCPQEQD 62 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DA+ V + + + D+ + + + V F S Y G TP P + CN+ +KF L+ Sbjct: 63 FMDAKAVAEKLELPLLRVDFVKEYWDHVFQYFLSEYEKGRTPNPDILCNKYIKFDAFLNY 122 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 ++G D++A GHY + + G + + R D +DQ+YFL QQ L FP+ Sbjct: 123 ANKMGFDMVAMGHYAQV-----EHGPKESRLIRGADTNKDQTYFLAQVPQQSLQHALFPI 177 Query: 193 GDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG- 250 G ++K VR +A+E+ L ++ K DS ICF+ + + + + +GDIV + Sbjct: 178 GHLEKHEVRQIAKELHLDSVSAKKDSTGICFIGERNFKAFLSNYLP--SKDGDIVDIESL 235 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPR---ESLEVHRIYLR 306 +++GRH G++ YTIGQR+GLG+ + P FVV D + + V + L + + Sbjct: 236 EVIGRHAGVLYYTIGQRKGLGIGGNKGPWFVVGKDVEKNVLYVTNGNESDWLFTNSCIVS 295 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQAC 365 +NW + + + + C K R Q V ++ +D+ V+V + + V SGQ Sbjct: 296 GVNWFSN----ERPSEDYACTAKFRYRQADNAVVLRFIDDNTVFVRYSQKVAAVTSGQEA 351 Query: 366 VFYTSDSNEARVLGGGIISGS 386 VFY +++ LGGG+I + Sbjct: 352 VFYQNET----CLGGGVIEDA 368 >gi|28198570|ref|NP_778884.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xylella fastidiosa Temecula1] gi|182681251|ref|YP_001829411.1| tRNA-specific 2-thiouridylase MnmA [Xylella fastidiosa M23] gi|32130276|sp|Q87DM0|MNMA_XYLFT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205828984|sp|B2I9X8|MNMA_XYLF2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|28056654|gb|AAO28533.1| tRNA methyltransferase [Xylella fastidiosa Temecula1] gi|182631361|gb|ACB92137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xylella fastidiosa M23] gi|307579701|gb|ADN63670.1| tRNA-specific 2-thiouridylase MnmA [Xylella fastidiosa subsp. fastidiosa GB514] Length = 379 Score = 437 bits (1125), Expect = e-120, Method: Composition-based stats. Identities = 118/374 (31%), Positives = 180/374 (48%), Gaps = 28/374 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R++VAMSGGVDSSV A L + G+ ++ + G C A +D DA VC Sbjct: 5 RIIVAMSGGVDSSVAAWRLNSQREAIAGLFMRNWTDDGN----GQCHAEEDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + ++ + D+ + V F + YA G TP P V CNR +KF L R+LGAD + Sbjct: 61 ILGIAFHFRDFSHEYWQEVFTHFLAEYANGRTPNPDVLCNREIKFKHFLETARELGADRI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R Y ++R + R D +DQSYFL Q+QL FP+GD++K+ +R Sbjct: 121 ATGHYARIEHY-----RQRWHLLRGADRSKDQSYFLHQLGQEQLAATLFPIGDLEKQQLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA + GL K DS ICF+ + + + +K+ A G+I Q + H G+ Sbjct: 176 QLAHQTGLPTHAKKDSTGICFIGERNFREFLKQYLP--AQPGEIRDPQEQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313 +T+GQR+GL + P +V+ D ++ + V L+ + +W+ Sbjct: 234 FTLGQRQGLNIGGVRNRPPSPWYVIGKDLATNVLYVDQHRDSPFLQSRWLRSEPAHWVSG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 F C + R Q P V +DG + VDF +++ V GQ+ V Y + Sbjct: 294 S----PPAPTFTCTAQTRYRQADEPCKVTVRNDGSLDVDFTRTQWAVTPGQSLVLYDGN- 348 Query: 373 NEARVLGGGIISGS 386 LGG +I+ + Sbjct: 349 ---ECLGGAVIATT 359 >gi|257066076|ref|YP_003152332.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Anaerococcus prevotii DSM 20548] gi|256797956|gb|ACV28611.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Anaerococcus prevotii DSM 20548] Length = 372 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 120/359 (33%), Positives = 185/359 (51%), Gaps = 24/359 (6%) Query: 36 VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEER 95 A LLK +GYDV+G+ ++ ++ + G C A D DA VC+ I + +Y ++E+ Sbjct: 22 AALLLKEEGYDVVGIFMKNWDD---TDENGVCTAEVDYEDAVAVCNQIGIPYYSINFEKE 78 Query: 96 FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGD 155 + + V F Y G TP P + CN+ +KF L + LGAD +ATGHY R D Sbjct: 79 YYDRVFTYFLDEYKKGRTPNPDIMCNKEIKFKAFLDFAKSLGADYVATGHYARV-----D 133 Query: 156 DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKS 215 +M R +D +DQ+YFL +Q+Q+ D+ FP+G+++K VR++A + L ADK Sbjct: 134 RSGDETVMLRGLDSNKDQTYFLSQLSQEQIKDVLFPVGELQKSEVREIAHKYKLATADKK 193 Query: 216 DSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM- 274 DS ICF+ + + + + A GDIV +G +LG+H+G++ +TIGQRRGLG+ Sbjct: 194 DSTGICFIGERDFNEFLSNYLP--AQAGDIVDTDGNVLGKHDGLMFHTIGQRRGLGIGGE 251 Query: 275 GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIR 331 GE FV D + +IV L +++Y E + E + F C K R Sbjct: 252 GEAWFVCGKDLKKNELIVCQGKNNPLLFSNKLYASEFS----TFTEKKIPKEFDCTAKFR 307 Query: 332 SSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389 Q + V+ +DG V V ++++ V GQA VFY + +G II Sbjct: 308 YRQADIKAHVKVLEDGKVEVTYDRT-KAVTPGQAAVFYQGEV----CIGSAIIDEVYND 361 >gi|254456653|ref|ZP_05070082.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Pelagibacter sp. HTCC7211] gi|207083655|gb|EDZ61081.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Pelagibacter sp. HTCC7211] Length = 372 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 168/379 (44%), Positives = 243/379 (64%), Gaps = 11/379 (2%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 LNS+ ++K P+D VVVAMSGGVDSS VA ++K +GY VIG+TL+LY+ K + Sbjct: 3 NELNSIGINKKPEDTTVVVAMSGGVDSSTVAGMMKNEGYKVIGITLKLYDDGKEVAKSKQ 62 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 CC+GQD+ DA+RV +N+ H + Y+++F+ VI F SY GETP+PCV CN+TVKF Sbjct: 63 CCSGQDIMDAKRVAHKLNIEHKILYYQDKFKQGVIDNFVDSYLNGETPIPCVQCNQTVKF 122 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 DL V+++L AD L TGHY++S M R +D RDQSYFLF TT++QL Sbjct: 123 KDLFEVSKELNADALVTGHYVKSITS-----NNTTNMYRAIDENRDQSYFLFNTTREQLD 177 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 LRFPLG M K+ R++A+++ L++ADK DSQDICFV G Y V+++ +G+I Sbjct: 178 YLRFPLGGMLKDETREIAKDLDLNVADKPDSQDICFVPNGDYASVIRKFRPDSFQKGNIK 237 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 +L+G ++G H+GIIN+TIGQR+G+ V+ EPL+V+ ++ ++ ++VGP+E L I L+ Sbjct: 238 NLDGDVIGVHDGIINFTIGQRKGIKVSDKEPLYVLKINSENNEIVVGPKEKLGKKSITLK 297 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQAC 365 ++N L D FVK+RS+ + + ++D+ V E G++ GQAC Sbjct: 298 DLN-----LLTDKKELKKNIFVKVRSTGSLLEAKIDLKDDNTANVSLISPEDGISPGQAC 352 Query: 366 VFYTSDSNEARVLGGGIIS 384 VFY D +VLGGG I Sbjct: 353 VFYNKDQYGHKVLGGGWIK 371 >gi|146300143|ref|YP_001194734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Flavobacterium johnsoniae UW101] gi|205816863|sp|A5FHA9|MNMA_FLAJO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|146154561|gb|ABQ05415.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Flavobacterium johnsoniae UW101] Length = 395 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 117/403 (29%), Positives = 199/403 (49%), Gaps = 48/403 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RVVV +SGGVDSSV A LL++ GY+VIG+ ++ ++ + C +D DA V Sbjct: 2 KRVVVGLSGGVDSSVAAYLLQQQGYEVIGLFMKNWHDDSVT-ISNECPWLEDSNDALLVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + D E ++ ++ + Y G TP P V CNR +KF + + LGAD Sbjct: 61 EKLGIPFQTVDLSEEYKEKIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMKIALSLGADY 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + + + DGK + D+ +DQSYFL +Q+QL FP+G + K V Sbjct: 121 VATGHYCQ-KSEIEVDGKTVYQLIAGNDVNKDQSYFLCQLSQEQLSKALFPIGALTKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN----------- 249 R++A EM L A+K DSQ +CF+ + + + +++ EG IV ++ Sbjct: 180 REIAAEMELVTAEKKDSQGLCFIGKVRLPEFLQQKLQ--PKEGTIVQIDKNDPIYNVEKQ 237 Query: 250 ----------------------GQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKN 286 G+++G+H G +T+GQR+GL V +PLFV+ D + Sbjct: 238 AGLSLEEELKIESQKLNYRPEMGKVMGKHQGAHYFTVGQRKGLNVGGTTDPLFVIATDVD 297 Query: 287 SSRVIVG---PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341 ++ + G L +++ E++W+ + L + + + +IR Q + Sbjct: 298 TNTIYTGLTSNHPGLFKKALFVGNSEVHWVREDL-KLKEGEQMEVMARIRYRQPLQKATL 356 Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + +G+YV F++ + + GQ +Y E ++G G+IS Sbjct: 357 HQFANGMYVHFDEPQSAITEGQFVAWYL----ENELVGSGVIS 395 >gi|71908904|ref|YP_286491.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dechloromonas aromatica RCB] gi|123626679|sp|Q47AW0|MNMA_DECAR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71848525|gb|AAZ48021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dechloromonas aromatica RCB] Length = 365 Score = 436 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 118/381 (30%), Positives = 179/381 (46%), Gaps = 34/381 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 VVV +SGGVDSSV A LLK+ G++VIG+ ++ + + C + QD+ D Sbjct: 2 SKKTVVVGLSGGVDSSVAALLLKQQGWNVIGLFMKNWEDDDTEE---YCSSRQDLIDVMS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + V ++ +R V F S Y AG TP P + CN +KF L QLGA Sbjct: 59 VADKIGIDVEVVNFAAEYRERVFAEFLSEYQAGRTPNPDILCNSEIKFKAFLDHAMQLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + + + + D +DQSYFL+ Q QL FPL D+ K Sbjct: 119 EKIATGHYAGVR-----EFDGKFQLLKAEDGTKDQSYFLYRLNQAQLSKTLFPLADIYKR 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR +A GL +A K DS ICF+ + + D + R +G+I L +G+++G H+ Sbjct: 174 DVRKIAEAEGLHVAAKKDSTGICFIGERPFKDFLSRYLP--PKKGEIRRLDDGKVMGEHD 231 Query: 258 GIINYTIGQRRGL-----------GVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 G++ +T+GQR+GL G + FV D + + V +L + Sbjct: 232 GLMFHTMGQRKGLHIGGIKEKGHPGGGDHDAWFVAGKDMEKNVLYVVQGHDHPALLKGDL 291 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASG 362 +++W+ V K R P V+R D + + F + + + G Sbjct: 292 VAEQLSWVSGNEPHTHWV----YTAKPRYRTSDQPCEVERVDAESCEIRFAEPQWALTPG 347 Query: 363 QACVFYTSDSNEARVLGGGII 383 Q+ V Y LGGG+I Sbjct: 348 QSVVLY----ESRVCLGGGVI 364 >gi|257060381|ref|YP_003138269.1| tRNA-specific 2-thiouridylase MnmA [Cyanothece sp. PCC 8802] gi|256590547|gb|ACV01434.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cyanothece sp. PCC 8802] Length = 349 Score = 436 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 149/366 (40%), Positives = 206/366 (56%), Gaps = 23/366 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV AA+L GY+VIG+TL L K KG CC+ V DA +C+ Sbjct: 3 KVVVGLSGGVDSSVAAAVLHHQGYEVIGLTLWLM------KGKGQCCSEGMV-DAAFICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140 + + H++ D + F+ ++ S Y AG TPLPC CNR VKF +L R +LG D Sbjct: 56 QLGIPHHIVDSRDVFQANIVNYLVSGYEAGITPLPCSQCNRAVKFGPMLDYARQELGCDR 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R D+ +R + R +D +DQSYFL+ +Q+ L FPLGD KE Sbjct: 116 IATGHYARIRY---DEISQRYQLLRAIDRNKDQSYFLYDLSQEMLAGTVFPLGDQTKEDT 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R +A E L A K +SQD+C ++ G + + EGDIV L G++LG+H GI Sbjct: 173 RRIAAEFDLKTASKPESQDLCLIEAHGSMKTFLDQYINQ--KEGDIVDLEGKVLGKHQGI 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQR+GLGVA EPL+VV LD ++VIV R + + +NW+ Sbjct: 231 HHYTIGQRKGLGVAAPEPLYVVKLDPIMNQVIVANRANAGRSHCTVTRLNWVSIAEPSTP 290 Query: 320 VVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + +IR VPV + D+ V + F++ E G+ GQA VFY + +L Sbjct: 291 I----RVETQIRYRSSAVPVDLIPLEDNRVKLVFDEPEFGITPGQAAVFYDGEI----LL 342 Query: 379 GGGIIS 384 GGGII Sbjct: 343 GGGIIE 348 >gi|71897609|ref|ZP_00679854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xylella fastidiosa Ann-1] gi|71732512|gb|EAO34565.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xylella fastidiosa Ann-1] Length = 379 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 118/374 (31%), Positives = 180/374 (48%), Gaps = 28/374 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R++VAMSGGVDSSV A L + G+ ++ + G C A +D DA VC Sbjct: 5 RIIVAMSGGVDSSVAAWRLNSQREAIAGLFMRNWTDDGN----GQCHAEEDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + ++ + D+ + V F + YA G TP P V CNR +KF L R+LGAD + Sbjct: 61 ILGIAFHFRDFSHEYWQEVFTHFLAEYANGRTPNPDVLCNREIKFKHFLETARELGADRI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R Y ++R + R D +DQSYFL Q+QL FP+GD++K+ +R Sbjct: 121 ATGHYARIEHY-----RQRWRLLRGADRSKDQSYFLHQLGQEQLAATLFPIGDLEKQQLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA + GL K DS ICF+ + + + +K+ A G+I Q + H G+ Sbjct: 176 QLAHQTGLPTHAKKDSTGICFIGERNFREFLKQYLP--AQPGEIRDPQEQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313 +T+GQR+GL + P +V+ D ++ + V L+ + +W+ Sbjct: 234 FTLGQRQGLNIGGVRNRPPSPWYVIGKDLATNVLYVDQHRDSPFLQSRWLRSEPAHWVSG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 F C + R Q P V +DG + VDF +++ V GQ+ V Y + Sbjct: 294 S----PPAPTFTCTAQTRYRQADEPCKVTVRNDGSLDVDFTRTQWAVTPGQSLVLYDGN- 348 Query: 373 NEARVLGGGIISGS 386 LGG +I+ + Sbjct: 349 ---ECLGGAVIATT 359 >gi|319760524|ref|YP_004124462.1| tRNA-specific 2-thiouridylase mnmA [Candidatus Blochmannia vafer str. BVAF] gi|318039238|gb|ADV33788.1| tRNA-specific 2-thiouridylase mnmA [Candidatus Blochmannia vafer str. BVAF] Length = 366 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 117/375 (31%), Positives = 192/375 (51%), Gaps = 28/375 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V +SGGVDSSV A LLK+ GY V G+ ++ + + + C + D+ DA VC Sbjct: 2 KKVIVGISGGVDSSVSAWLLKKRGYKVEGLFMKNWENDDTQEF---CASKSDLIDACSVC 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139 +T+ + + ++ + N V F Y G TP P + CN+ +KF L LGAD Sbjct: 59 NTLKIPLHTVNFSREYWNNVFKVFLKLYNIGLTPNPDILCNKEIKFKYFLEFAIEDLGAD 118 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R + + + R +DL +DQSYFL+ QQQL FP+G+ K Sbjct: 119 FIATGHYVRRI-----NFNNKISLIRGIDLNKDQSYFLYTLNQQQLKHCLFPIGNFTKLK 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A+++ L A+K DS ICF+ + + + G IV+++G +G H G+ Sbjct: 174 VRSIAKKLNLITANKKDSMGICFIGKRNFKKFLSNYIP--IQPGPIVNVHGYKIGTHQGV 231 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 YTIGQR+GL + G+P +VV ++ +IV L ++ +++I W+ Sbjct: 232 PFYTIGQRKGLNIGGIKNSNGKPWYVVDKKIENNSLIVAQGINHPCLMSNQFVVQQIFWI 291 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTS 370 + + + +C VK R Q ++ + + + + + + GQ+ VFY + Sbjct: 292 EECI----LTSPLQCSVKTRYRQPDSKCYIFPISKNNLRIILKYPITAITPGQSAVFYLN 347 Query: 371 DSNEARVLGGGIISG 385 + R LGGGII+ Sbjct: 348 E----RCLGGGIITK 358 >gi|239787342|emb|CAX83819.1| tRNA-specific 2-thiouridylase MnmA [uncultured bacterium] Length = 366 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 188/373 (50%), Positives = 240/373 (64%), Gaps = 17/373 (4%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 L PK RV VAMSGGVDSSVVAAL+ ++GY V+G+TLQLY+ +A ++ +CCAGQD+ Sbjct: 10 LAGIPKGARVAVAMSGGVDSSVVAALMHKEGYQVVGITLQLYDHGEAIQKTKTCCAGQDI 69 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 YDARRV + I HYV DYE F+ VI FA SY GETP+PCV CN+ +KF DLL Sbjct: 70 YDARRVSEKIGFHHYVLDYESIFKEEVIDDFADSYLRGETPIPCVQCNQKIKFRDLLRTA 129 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 R L L TGHY+++ G+ + + D RDQSYFLF+T QQ L LRFPLG Sbjct: 130 RDLDCAALVTGHYVQN--INGE-------LHQAHDPSRDQSYFLFSTKQQDLNYLRFPLG 180 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 + K R LA E GL+IA+K DSQDICFV G Y V ++ + GDIV+L+G+IL Sbjct: 181 GIPKSQTRILAEEFGLEIANKPDSQDICFVPNGNYAQTVAKLRPEALIAGDIVNLDGKIL 240 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+H GII+YTIGQRRGLG+A +PL+VV LD ++VIVGPR +L V I ++++NW D Sbjct: 241 GQHQGIIHYTIGQRRGLGIASVDPLYVVALDPIHNQVIVGPRSALAVTHIPVQDVNWFVD 300 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 GF C VK+RS+ + VQ D+ V ++ E GV+SGQACVFY Sbjct: 301 L---SKYPCGFYCTVKVRSTGAALSAKVQMIDESHALVTLDQPEYGVSSGQACVFYDG-- 355 Query: 373 NEARVLGGGIISG 385 RV+GGG I Sbjct: 356 --TRVIGGGWIKR 366 >gi|319787135|ref|YP_004146610.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudoxanthomonas suwonensis 11-1] gi|317465647|gb|ADV27379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pseudoxanthomonas suwonensis 11-1] Length = 373 Score = 436 bits (1122), Expect = e-120, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 176/374 (47%), Gaps = 28/374 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R VV +SGGVDSSV A LL + G + G+ +Q ++ G C A +D DA VC Sbjct: 6 RTVVGVSGGVDSSVAAWLLAQSGEPLAGLFMQNWDDD----GSGECRAEEDRRDAVAVCG 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + + V F + YAAG TP P V CNR VKF L R+LGA+ + Sbjct: 62 RLGIPFHFRDFSKEYWAGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAARELGAERI 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + G R + R D ++DQ+YFL Q QL FP+G + K VR Sbjct: 122 ATGHYAQVLHEGG-----RWRLLRGADRDKDQTYFLHQLGQAQLAATLFPIGHLPKAEVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LARE GL K DS ICF+ + + + + R A A G+I G +G H G+ Sbjct: 177 RLAREAGLPTHAKKDSTGICFIGERDFREFLGRYLA--AQPGEIRDPQGVRIGTHPGVFY 234 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313 +T+GQR GL + P +VV D + + V L + ++W+ Sbjct: 235 FTLGQREGLAIGGVRGRPAAPWYVVGKDVAGNILYVDQDRDSPWLMAGTVETEAMHWVEG 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 F C ++R Q P V+ DDG + V F + + GQ+ V Y Sbjct: 295 A----PPATEFDCTAQVRYRQQDEPCRVRVRDDGTLSVRFVRPQRAATPGQSLVLYDG-- 348 Query: 373 NEARVLGGGIISGS 386 LGG +I+ + Sbjct: 349 --PVCLGGAVIAST 360 >gi|166712080|ref|ZP_02243287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xanthomonas oryzae pv. oryzicola BLS256] Length = 378 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 183/386 (47%), Gaps = 31/386 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+VV +SGGVDSSV A L + G + G+ +Q + A G C A D DA VC Sbjct: 5 RIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + ++ + D+ + + V F + YAAG TP P V CNR VKF L + LGA+ + Sbjct: 61 VLGIAFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + G R + R D +DQSYFL Q QL FP+GD++K ++R Sbjct: 121 ATGHYAQVAHRGG-----RWRLLRGADRGKDQSYFLHQLGQSQLAATLFPIGDLEKSTLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +AR+ GL K DS ICF+ + + + + R A G+I GQ + H G+ Sbjct: 176 RIARDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313 +T+GQR GL + P +VV D S+ + V L+ + + +W+ Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 F C + R Q P V DDG V V FE+ + V GQ+ V Y Sbjct: 294 A----PPARRFSCTAQTRYRQPDEPCTVDVQDDGSVQVHFERPQRAVTPGQSLVLYDG-- 347 Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398 LGG +I+ + DA E L+ Sbjct: 348 --KECLGGAVIAAT---DAPLERQLA 368 >gi|166367576|ref|YP_001659849.1| tRNA-specific 2-thiouridylase MnmA [Microcystis aeruginosa NIES-843] gi|205816884|sp|B0JVR4|MNMA_MICAN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|166089949|dbj|BAG04657.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Microcystis aeruginosa NIES-843] Length = 352 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 155/368 (42%), Positives = 211/368 (57%), Gaps = 23/368 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV AA L GYDVIG+TL L K KG CC+ V DA +C+ Sbjct: 3 KVVVGLSGGVDSSVAAAALHAQGYDVIGLTLWLM------KGKGQCCSEGMV-DAAFICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + V H++ D E F+ +I S Y AG TPLPC CN+ VKFS +L R+ L D Sbjct: 56 QLGVPHHIVDSRELFQKEIIDYLVSGYEAGITPLPCSQCNKAVKFSPMLHYARETLQTDT 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R ++ R + R +D +DQSYFL+ TQ L FPLG+ K Sbjct: 116 IATGHYARIRFSPENN---RYQLLRAVDQNKDQSYFLYDLTQDVLRGTLFPLGEQTKAET 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R +A+E GL ADK DSQD+C ++ G + + A EGDIV L+G++LG+H+GI Sbjct: 173 RRIAQEFGLKTADKPDSQDLCLIEAHGTMRSFLDKYIA--VSEGDIVDLDGKVLGKHSGI 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQR+G+G+A EPL+VV LD +RVIVG RES + +NW+ Sbjct: 231 HHYTIGQRKGIGIAAAEPLYVVKLDPVMNRVIVGNRESAVSAACLVGRMNWVSIA----E 286 Query: 320 VVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + V++R VPV + ++ V + F++ + + GQA V Y + VL Sbjct: 287 PTTPIRAQVQVRYRSPAVPVNVIPLENNQVKLVFDQPQFSITPGQAAVIYEGEI----VL 342 Query: 379 GGGIISGS 386 GGGIISG+ Sbjct: 343 GGGIISGA 350 >gi|163755895|ref|ZP_02163012.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Kordia algicida OT-1] gi|161324066|gb|EDP95398.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Kordia algicida OT-1] Length = 395 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 120/403 (29%), Positives = 194/403 (48%), Gaps = 48/403 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RV+V +SGGVDSSV A LLK GY+VIG+ ++ ++ + C +D DA V Sbjct: 2 KRVIVGLSGGVDSSVTAYLLKEQGYEVIGLFMKNWHDDSVT-ISNECPWLEDSNDAMIVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + D E+++ ++ + Y G TP P V CNR +KF L + LGAD Sbjct: 61 EKLGIPFQTVDLSEQYKERIVDYMFNEYEKGRTPNPDVLCNREIKFDVFLKIALDLGADY 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + +GK+ + D +DQSYFL +Q+QL FP+G++ K V Sbjct: 121 VATGHYCRKET-IEKNGKQIHKLLAGKDGNKDQSYFLCQLSQEQLEKSLFPIGELTKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248 R++A + L A+K DSQ +CF+ + K D +++ EG IV + Sbjct: 180 REIAAKADLITAEKKDSQGLCFIGKVKLPDFLQQQLQ--PKEGVIVEVPNTIKSYHKELP 237 Query: 249 ---------------------NGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKN 286 +G+++G+H G +T GQR+GL V EPLFV+ D Sbjct: 238 EFASKEEELAFYAQKYTYNQTDGKVVGKHQGAHYFTKGQRKGLAVGGTVEPLFVIETDVE 297 Query: 287 SSRVIVGP---RESLEVHRIYLRE--INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341 + + G L +++ + ++W+ + L A + + +IR Q + Sbjct: 298 ENVIYTGQGKSHPGLYRRTLFVTDDELHWVREDLALQA-DESMEVMARIRYRQPLQKAVL 356 Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + + G YVDFE + + GQ +Y + ++G G+IS Sbjct: 357 YKIEGGAYVDFETPQSAITEGQFVAWYMDE----ELIGSGVIS 395 >gi|218248292|ref|YP_002373663.1| tRNA-specific 2-thiouridylase MnmA [Cyanothece sp. PCC 8801] gi|226704769|sp|B7K1G5|MNMA_CYAP8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|218168770|gb|ACK67507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cyanothece sp. PCC 8801] Length = 349 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 150/366 (40%), Positives = 207/366 (56%), Gaps = 23/366 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV AA+L GY+VIG+TL L K KG CC+ V DA +C+ Sbjct: 3 KVVVGLSGGVDSSVAAAVLHHQGYEVIGLTLWLM------KGKGQCCSEGMV-DAAFICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140 + + H++ D + F+ ++ S Y AG TPLPC CNR VKF +L+ R +LG D Sbjct: 56 QLGIPHHIVDSRDVFQANIVNYLVSGYEAGITPLPCSQCNRAVKFGPMLNYARQELGCDR 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R D+ +R + R +D +DQSYFL+ +Q+ L FPLGD KE Sbjct: 116 IATGHYARIRY---DEISQRYQLLRAIDRNKDQSYFLYDLSQEMLAGTVFPLGDQTKEDT 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R +A E L A K +SQD+C ++ G + + EGDIV L G++LG+H GI Sbjct: 173 RRIAAEFDLKTASKPESQDLCLIEAHGSMKTFLDQYIHQ--KEGDIVDLEGKVLGKHQGI 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQR+GLGVA EPL+VV LD ++VIV R + + +NW+ A Sbjct: 231 HHYTIGQRKGLGVAAPEPLYVVKLDPIMNQVIVANRANAGRSDCTVTRLNWVSIA----A 286 Query: 320 VVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + +IR VPV + D+ V + F++ E G+ GQA VFY + +L Sbjct: 287 PSTPIRVETQIRYRSSAVPVDLIPLEDNRVKLVFDEPEFGITPGQAAVFYDGEI----LL 342 Query: 379 GGGIIS 384 GGGII Sbjct: 343 GGGIIE 348 >gi|159028008|emb|CAO87968.1| trmU [Microcystis aeruginosa PCC 7806] Length = 352 Score = 435 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 155/368 (42%), Positives = 211/368 (57%), Gaps = 23/368 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV AA L GYDVIG+TL L K KG CC+ V DA +C+ Sbjct: 3 KVVVGLSGGVDSSVAAAALHAQGYDVIGLTLWLM------KGKGQCCSEGMV-DAAFICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + V H++ D E F+ +I S Y AG TPLPC CN+ VKFS +L R+ L D Sbjct: 56 QLGVPHHIVDSRELFQKEIIDYLVSGYEAGITPLPCSQCNKAVKFSPMLHYARETLETDT 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R ++ R + R +D +DQSYFL+ TQ L FPLG+ K Sbjct: 116 IATGHYARIRFSPENN---RYQLMRAVDKNKDQSYFLYDLTQDVLRGTLFPLGEQTKAET 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R +A+E GL ADK DSQD+C ++ G + + A EGDIV L+G++LG+H+GI Sbjct: 173 RRIAQEFGLKTADKPDSQDLCLIEAHGTMRSFLDKYIA--VSEGDIVDLDGKVLGKHSGI 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQR+G+G+A EPL+VV LD +RVIVG RES + +NW+ Sbjct: 231 HHYTIGQRKGIGIAAAEPLYVVKLDPVMNRVIVGNRESAVSADCLVGRMNWVSIA----Q 286 Query: 320 VVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + V++R VPV + ++ V + F++ + + GQA V Y + VL Sbjct: 287 PTTPIRAQVQVRYRSPAVPVNVIPLENNQVKLVFDEPQFSITPGQAAVIYEGEI----VL 342 Query: 379 GGGIISGS 386 GGGIISG+ Sbjct: 343 GGGIISGA 350 >gi|295134761|ref|YP_003585437.1| tRNA methyl transferase [Zunongwangia profunda SM-A87] gi|294982776|gb|ADF53241.1| tRNA methyl transferase [Zunongwangia profunda SM-A87] Length = 395 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 117/403 (29%), Positives = 193/403 (47%), Gaps = 48/403 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VVV +SGGVDSSV A LLK GY+VIG+ ++ ++ + C +D DA V Sbjct: 2 KKVVVGLSGGVDSSVSAYLLKEQGYEVIGLFMKNWHDDSVT-ISDECPWLEDSNDAMIVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + D E+++ ++ + Y G TP P V CNR +KF + + LGAD Sbjct: 61 EKLGIPFQTVDLSEQYKERIVDYMFNEYERGRTPNPDVLCNREIKFDVFMKIALSLGADY 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + +G++ + D +DQSYFL TQ+QL FP+G+++K V Sbjct: 121 VATGHYCR-KGEIEKNGEKIYQLLSGKDNNKDQSYFLCQLTQEQLSKTLFPIGELQKSEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248 R +A E L ADK DSQ +CF+ + + D +++ EG+IV + Sbjct: 180 RRIAAEQELVTADKKDSQGLCFIGKVRLPDFLQQKLK--PKEGNIVEIKPDSETYQTGIP 237 Query: 249 ---------------------NGQILGRHNGIINYTIGQRRGL-GVAMGEPLFVVYLDKN 286 +G+++G+H G +T GQR+GL EPLFV+ D Sbjct: 238 EFESKIEELKFLSQKYQYQPQDGKVVGKHQGAHYFTKGQRKGLAVGGTPEPLFVIDTDVE 297 Query: 287 SSRVIVGP---RESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341 + + G + +++ E++W+ L + + +IR Q + Sbjct: 298 DNVIYTGQGKKHPGIYRKGLFINEDEVHWVRKDL-SLKPGESLELKARIRYRQPLQEATL 356 Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + + G+YV F+ + + GQ +Y + +LG G+IS Sbjct: 357 YQTEQGMYVVFKTPQASITEGQFVAWYDGE----ELLGSGVIS 395 >gi|325128645|gb|EGC51514.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis N1568] Length = 367 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 118/381 (30%), Positives = 182/381 (47%), Gaps = 24/381 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ ++V +SGGVDSSV AALLK+ GY V GV +Q + + C QD Sbjct: 1 MNTTANPSNIIVGLSGGVDSSVTAALLKQQGYQVRGVFMQNWEDDDNDE---YCSIKQDS 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DA V D I + + ++ ++++ V F Y+AG TP P V CN +KF L Sbjct: 58 FDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEYSAGRTPNPDVLCNAEIKFKCFLDYA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 GAD +ATGHY R + G + + +D +DQSYFL+ QL FPLG Sbjct: 118 VGQGADTIATGHYARKEVRNG-----VHYLLKGLDRNKDQSYFLYRLKPFQLERAIFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++K VR LA E L A K DS ICF+ + + + +++ G +V G+ + Sbjct: 173 GLEKPEVRRLAAEFKLPTAAKKDSTGICFIGERPFREFLQKYLPTDN--GKMVTPEGKTV 230 Query: 254 GRHNGIINYTIGQRR-GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREIN 309 G H G++ YT+GQR+ GEP FV D + +IV L + + +++ Sbjct: 231 GEHVGLMFYTLGQRKGLGIGGGGEPWFVAAKDLTKNELIVVQGHDHPLLYTRSLVMNDLS 290 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFY 368 + L E + C K R P ++ +++ + F++ + V GQ+ V Y Sbjct: 291 FT---LPERPKAGRYTC--KTRYRMADAPCELRYLDEETAELVFDEPQWAVTPGQSAVLY 345 Query: 369 TSDSNEARVLGGGIISGSKRS 389 D LGGGII + + Sbjct: 346 DGDI----CLGGGIIQTTDKP 362 >gi|238021297|ref|ZP_04601723.1| hypothetical protein GCWU000324_01196 [Kingella oralis ATCC 51147] gi|237868277|gb|EEP69283.1| hypothetical protein GCWU000324_01196 [Kingella oralis ATCC 51147] Length = 362 Score = 434 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 120/376 (31%), Positives = 183/376 (48%), Gaps = 24/376 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + ++V +SGGVDSSV AALL + G++V G+ +Q + + C +D DA Sbjct: 2 QSQNIIVGLSGGVDSSVTAALLHQQGHNVRGIFMQNWEDDNNDQ---YCSIKEDSLDAMA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + + ++ ++++ V F Y AG TP P V CN +KF L GA Sbjct: 59 VADIIGIDIDIVNFAAQYKDKVFAYFLQEYEAGRTPNPDVLCNAEIKFKCFLDHAIAQGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R + G + + D +DQSYFL+ QL FPLG M+K Sbjct: 119 EAIATGHYARKEVRNG-----VHYLLKGADGSKDQSYFLYRLQPFQLERALFPLGGMQKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR LA + L A K DS ICF+ + + + +++ G++V +G+I+G H G Sbjct: 174 EVRRLASDFRLPTAAKKDSTGICFIGERPFREFLQKYLP--THNGNMVTPDGKIVGEHIG 231 Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLGDG 314 + YTIGQR+GLG+ GEP FV + + +IV L + + +++W Sbjct: 232 LTFYTIGQRKGLGIGGAGEPWFVAGKNLARNELIVVQGHDDPLLYSGSLKMNQLSWT--- 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSN 373 L E + C K R P ++ DD + F+ + V GQ+ V Y D Sbjct: 289 LPEKPAAGRYTC--KTRYRMADAPCELRYLDDHTAELVFDAPQWAVTPGQSAVLYDGDI- 345 Query: 374 EARVLGGGIISGSKRS 389 LGGGII+ + + Sbjct: 346 ---CLGGGIITETDKP 358 >gi|313887530|ref|ZP_07821213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846408|gb|EFR33786.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 353 Score = 434 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 118/372 (31%), Positives = 174/372 (46%), Gaps = 27/372 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + +V++ MSGGVDSSV A LLK GYDV V ++ + G C A +D D Sbjct: 3 EKKKVILGMSGGVDSSVSAILLKEAGYDVTAVFMRNWAEDD-----GMCTAREDYIDVVS 57 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC + + ++ ++E+ +R+ V F S Y G TP P V CN +KF L A Sbjct: 58 VCSQLGIKYFTVNFEKEYRDRVFSYFLSEYKKGRTPNPDVMCNTEIKFKAFLDYAMDFDA 117 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +A GHY R++ G + + + +D +DQSYFL + L FP+GD+ K+ Sbjct: 118 DYIAMGHYARTKKVHG-----KTYLLKGLDNNKDQSYFLSRVKSEALEKTLFPVGDLTKD 172 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A + L A K DS ICF+ + + + + + G IV G++LG H+G Sbjct: 173 EVRRIAEKYELSTASKKDSTGICFIGERDFNEFLDQFL--FTKPGKIVDEKGKVLGEHSG 230 Query: 259 IINYT---IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +++YT GV GEP FV D ++ +IV L + +I W+ Sbjct: 231 LMHYTIGQRRGIGIGGVGSGEPFFVADKDLKNNLLIVAQGINNPVLYKDEFEVEDIFWIT 290 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + VKIR +++ +D V +K GV GQ CVFY D Sbjct: 291 EN-----PSLPVDLSVKIRYRASDQAATLEKQNDKYVVKLKKPLKGVTPGQVCVFYQGDV 345 Query: 373 NEARVLGGGIIS 384 LG GII Sbjct: 346 ----CLGSGIIK 353 >gi|58582179|ref|YP_201195.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas oryzae pv. oryzae KACC10331] gi|188576740|ref|YP_001913669.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas oryzae pv. oryzae PXO99A] gi|188576931|ref|YP_001913860.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas oryzae pv. oryzae PXO99A] gi|75435215|sp|Q5GZR1|MNMA_XANOR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205829009|sp|B2SMD7|MNMA_XANOP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|58426773|gb|AAW75810.1| tRNA methyltransferase [Xanthomonas oryzae pv. oryzae KACC10331] gi|188521192|gb|ACD59137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521383|gb|ACD59328.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xanthomonas oryzae pv. oryzae PXO99A] Length = 378 Score = 434 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 182/386 (47%), Gaps = 31/386 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV +SGGVDSSV A L + G + G+ +Q + A G C A D DA VC Sbjct: 5 HIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + + V F + YAAG TP P V CNR VKF L + LGA+ + Sbjct: 61 VLGMPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + G R + R D ++DQSYFL Q QL FP+GD++K ++R Sbjct: 121 ATGHYAQVAHRGG-----RWRLLRGADRDKDQSYFLHQLGQSQLAATLFPIGDLEKSTLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +AR+ GL K DS ICF+ + + + + R A G+I GQ + H G+ Sbjct: 176 RIARDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313 +T+GQR GL + P +VV D S+ + V L+ + + +W+ Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 F C + R Q P V DDG V V FE+ + V GQ+ V Y Sbjct: 294 A----PPARRFSCTAQTRYRQPDEPCTVDVQDDGSVQVHFERPQRAVTPGQSLVLYDG-- 347 Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398 LGG +I+ + DA E L+ Sbjct: 348 --KECLGGAVIAAT---DAPLERQLA 368 >gi|257471315|ref|ZP_05635314.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] Length = 392 Score = 434 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 121/371 (32%), Positives = 196/371 (52%), Gaps = 28/371 (7%) Query: 25 VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84 VAMSGGVDSSV A +LK+ Y V G+ ++ + +G C + +D+ DA +C +N Sbjct: 35 VAMSGGVDSSVCAWILKKQNYQVEGLFMKNWEEDDQ---EGYCSSTKDLLDAENICKKLN 91 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLAT 143 + + ++ + V F Y G TP P + CN+ +KF+ L+ + ++L AD +AT Sbjct: 92 IYLHKMNFSSEYWEYVFENFLKEYKKGNTPNPDILCNKEIKFNMFLNYSIQELKADYIAT 151 Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 GHY R + G + ++ + +D +DQSYFL+ QL + FP+G +KK VR++ Sbjct: 152 GHYARIKKING-----KYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLKKNKVRNI 206 Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263 A+++ L IA K DS ICF+ K + + + +GDIV ++G+++G+H+G+ YT Sbjct: 207 AKKIDLKIAKKKDSTGICFIGPKKLKNFLSLYISE--KKGDIVTISGRVIGKHSGVFYYT 264 Query: 264 IGQRRGLGVAM--GE---PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315 IGQR+GLG+ GE P +VV + + +IV + L + + INW+ Sbjct: 265 IGQRQGLGIGGIKGEYNIPWYVVEKNIEKNILIVAQGSYNKHLMSIGLIAKNINWIN--- 321 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 D + C K R Q + ++ N+ + + F+ V GQ+ VFY SD Sbjct: 322 -YDQLSFPLSCMAKTRYRQKDITCKIEYINNHHIKILFDFPVAAVTPGQSVVFYVSDI-- 378 Query: 375 ARVLGGGIISG 385 +GGGII Sbjct: 379 --CIGGGIIES 387 >gi|219681627|ref|YP_002468013.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219624470|gb|ACL30625.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 368 Score = 434 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 121/371 (32%), Positives = 196/371 (52%), Gaps = 28/371 (7%) Query: 25 VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84 VAMSGGVDSSV A +LK+ Y V G+ ++ + +G C + +D+ DA +C +N Sbjct: 11 VAMSGGVDSSVCAWILKKQNYQVEGLFMKNWEEDDQ---EGYCSSTKDLLDAENICKKLN 67 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLAT 143 + + ++ + V F Y G TP P + CN+ +KF+ L+ + ++L AD +AT Sbjct: 68 IYLHKMNFSSEYWEYVFENFLKEYKKGNTPNPDILCNKEIKFNMFLNYSIQELKADYIAT 127 Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 GHY R + G + ++ + +D +DQSYFL+ QL + FP+G +KK VR++ Sbjct: 128 GHYARIKKING-----KYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLKKNKVRNI 182 Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263 A+++ L IA K DS ICF+ K + + + +GDIV ++G+++G+H+G+ YT Sbjct: 183 AKKIDLKIAKKKDSTGICFIGPKKLKNFLSLYISE--KKGDIVTISGRVIGKHSGVFYYT 240 Query: 264 IGQRRGLGVAM--GE---PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315 IGQR+GLG+ GE P +VV + + +IV + L + + INW+ Sbjct: 241 IGQRQGLGIGGIKGEYNIPWYVVEKNIEKNILIVAQGSYNKHLMSIGLIAKNINWIN--- 297 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 D + C K R Q + ++ N+ + + F+ V GQ+ VFY SD Sbjct: 298 -YDQLSFPLSCMAKTRYRQKDITCKIEYINNHHIKILFDFPVAAVTPGQSVVFYVSDI-- 354 Query: 375 ARVLGGGIISG 385 +GGGII Sbjct: 355 --CIGGGIIES 363 >gi|294788306|ref|ZP_06753549.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Simonsiella muelleri ATCC 29453] gi|294483737|gb|EFG31421.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Simonsiella muelleri ATCC 29453] Length = 363 Score = 434 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 128/376 (34%), Positives = 193/376 (51%), Gaps = 24/376 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ ++V +SGGVDSSV AALLK+DG +V GV +Q + + C QD DA Sbjct: 3 ENQNIIVGLSGGVDSSVTAALLKQDGANVHGVFMQNWEDDNNDQ---YCSIKQDSLDAMA 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + + ++ ++++ V F YAAG TP P V CN +KF L + GA Sbjct: 60 VADIIGIDIDIVNFATQYKDKVFAYFLQEYAAGRTPNPDVLCNAEIKFKCFLDYAIEQGA 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + +ATGHY R ++ G + R +D +DQSYFL+ QL FPLG ++K Sbjct: 120 EAIATGHYARKQIRNG-----VHYLLRGLDNNKDQSYFLYRLQPHQLEKSLFPLGHLQKT 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR LA E+ L A K DS ICF+ + + + +++ G++V G+I+G H G Sbjct: 175 EVRRLATELKLPTATKKDSTGICFIGERPFREFLQKYLP--THNGNMVTPEGKIVGEHVG 232 Query: 259 IINYTIGQRRGLGVAM-GEPLFVVYLDKNSSR--VIVGP-RESLEVHRIYLREINWLGDG 314 + YTIGQR+GLG+ GEP FVV D + V+ G E L + + + +++W Sbjct: 233 LTFYTIGQRKGLGIGGAGEPWFVVGKDLPKNELLVVQGHDHELLYTNSLEMNQLSWT--- 289 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 L E V + C K R ++ +DD + F + + V GQ+ V Y + Sbjct: 290 LPEKPVAGRYTC--KTRYRMADAACELRYLSDDTAELLFNEPQWAVTHGQSAVLYDGEI- 346 Query: 374 EARVLGGGIISGSKRS 389 LGGGII+ + + Sbjct: 347 ---CLGGGIITATDKP 359 >gi|307151112|ref|YP_003886496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cyanothece sp. PCC 7822] gi|306981340|gb|ADN13221.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cyanothece sp. PCC 7822] Length = 353 Score = 434 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 148/366 (40%), Positives = 202/366 (55%), Gaps = 23/366 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV +SGGVDSS AA L GY+V+G+TL L K KG CC+ V DA +C+ Sbjct: 4 VVVGLSGGVDSSTAAATLHHQGYEVVGLTLWLM------KGKGQCCSEGMV-DAAFICEQ 56 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADVL 141 + + H++ D + F+ +I S Y AG TPLPC CNR VKF +L R +LG D + Sbjct: 57 LGIPHHIVDSRDVFQENIIDYLVSGYEAGITPLPCSQCNRAVKFGPMLRYARQELGIDCI 116 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R D+ +R + R +D +DQSYFL+ TQ L FPLG+ KE R Sbjct: 117 ATGHYARIRY---DETTQRYQLLRAVDRNKDQSYFLYDLTQDLLAGTIFPLGNQTKEETR 173 Query: 202 DLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 +A E GL ADK +SQD+C ++ G + + EGDIV L G++LG+H GI Sbjct: 174 RIANEFGLKTADKPESQDLCLIEAHGSMQAFLDQYIHQ--KEGDIVDLKGKVLGKHKGIH 231 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +YTIGQR+G+GVA EPL+VV LD ++VIVG R + +NW+ Sbjct: 232 HYTIGQRKGIGVAAAEPLYVVKLDPVMNQVIVGNRADAGKPECSVSRMNWVSIA----EP 287 Query: 321 VDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 V++R VPV + D+ V + F++ + G+ GQA V Y + +LG Sbjct: 288 SSPIHTEVQVRYRSSAVPVDVIPLGDNRVKLVFDEPQFGITPGQAAVLYDGEV----LLG 343 Query: 380 GGIISG 385 GGII Sbjct: 344 GGIIEK 349 >gi|229828822|ref|ZP_04454891.1| hypothetical protein GCWU000342_00905 [Shuttleworthia satelles DSM 14600] gi|229791985|gb|EEP28099.1| hypothetical protein GCWU000342_00905 [Shuttleworthia satelles DSM 14600] Length = 361 Score = 434 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 134/367 (36%), Positives = 192/367 (52%), Gaps = 16/367 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARR 78 VVV MSGGVDSSV A LLK +GY VIGVT+Q++ A + G CC V DARR Sbjct: 5 KTVVVGMSGGVDSSVAAYLLKEEGYRVIGVTMQIWQDESACSLEEHGGCCGLSAVEDARR 64 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V I + HYV +++ F++ VI F Y G TP PC+ CNR VK+ LL + +GA Sbjct: 65 VARMIGIPHYVMNFKAEFQDRVIDYFTDEYLRGRTPNPCIACNRYVKWESLLERSLAIGA 124 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R R + + +DQ+Y L+ TQ+QL P+GD K Sbjct: 125 DYIATGHYARVEHLA----NGRYAVRNSVTAAKDQTYALYNLTQEQLAHTLMPVGDYDKP 180 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG-IALEGDIVHLNGQILGRHN 257 +R++A GL +A K+DS+DICF+ Y ++R I G+ V +G ++GRH Sbjct: 181 RIREIALAAGLPVAHKADSEDICFIPDHDYASFLEREAPDRIPEPGNFVLEDGSVIGRHQ 240 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI +YTIGQR+GLG++ PLFV + S+ V++ +E + + +N + F+ Sbjct: 241 GISHYTIGQRKGLGISWDSPLFVKEIRPGSNEVVLTSKEGVFTDHLTFENVNHMAVEAFQ 300 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 G + KIR S ++ + + + F + V GQA V Y + Sbjct: 301 P----GEEYLAKIRYSDPGCMCRIEAVGQERIRLAFSRKVRAVTPGQALVLYQGEFIA-- 354 Query: 377 VLGGGII 383 GGG I Sbjct: 355 --GGGTI 359 >gi|149175981|ref|ZP_01854598.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Planctomyces maris DSM 8797] gi|148845135|gb|EDL59481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Planctomyces maris DSM 8797] Length = 369 Score = 434 bits (1118), Expect = e-119, Method: Composition-based stats. Identities = 136/379 (35%), Positives = 198/379 (52%), Gaps = 29/379 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS---------------KRKG 65 RVV+AMSGGVDSS A LL GY+VIG+ ++ + + + K Sbjct: 3 QRVVLAMSGGVDSSAAAHLLLEQGYEVIGLFMRSGATEETACAIEDKNSLPVLNLKAHKQ 62 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 CC+ D DARRV D +++ + ++++ F + FA Y AG TP PCV CN +K Sbjct: 63 GCCSASDAADARRVADMLDIPFHALNFKDAF-GRIKDYFADEYLAGRTPNPCVMCNNWLK 121 Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 F L Q+GA ++TGHY + + + + R +D +DQSY LF + L Sbjct: 122 FGKLWEFAEQVGASYISTGHYAQLTSLPDE---TQPALIRGLDRSKDQSYVLFGINRGLL 178 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 + FP+G K +R++A E GL A+K DSQ+ICF+ YF + R G++ Sbjct: 179 DKIIFPVGGFVKPEIREMAGEAGLRTANKPDSQEICFIPDNDYFGFLNRYRGPQETAGEM 238 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 V +G ++G+H G NYTIGQR+ LGVA G P FV+ ++ ++RV++G R+ L + + Sbjct: 239 VDTSGNVVGQHTGYENYTIGQRKRLGVAFGTPRFVIKIEPETNRVVIGTRDELARNSLEA 298 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQA 364 NWL D + +C +IR V+ ++D V F+ E GVA GQA Sbjct: 299 NRSNWLIDDPGSE-----IRCQAQIRYQHKEADCLVEILDEDRFRVTFDDPEYGVAPGQA 353 Query: 365 CVFYTSDSNEARVLGGGII 383 V Y D RVLGGG I Sbjct: 354 VVLYDED----RVLGGGWI 368 >gi|291558301|emb|CBL35418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium siraeum V10Sc8a] Length = 358 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 138/365 (37%), Positives = 208/365 (56%), Gaps = 13/365 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARR 78 + + V+AMSGGVDSSV A L+K+ +D IGVT++L+ N R+ SCC+ DV DAR Sbjct: 2 NNKAVIAMSGGVDSSVAAYLMKQRVFDCIGVTMKLFANEDIGISREHSCCSLDDVEDARS 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V ++++ +YVF++ +RF VI F +Y G TP PC+DCNR +KF L ++L Sbjct: 62 VAYSLDMPYYVFNFSDRFETDVIDRFIHAYENGITPNPCIDCNRYLKFDKLYMRAKELDR 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGHY R G++G R ++ + +D +DQSY L+ TQ+QL FPLG+M+K Sbjct: 122 DYVVTGHYARV--EKGENG--RFLLKKALDDTKDQSYVLYCLTQEQLSHTIFPLGEMRKS 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R++A G A K+DSQDICFVQ G Y D +++ +GD + NG ++GRH G Sbjct: 178 QAREIAESQGFINARKADSQDICFVQNGSYADFIEQYTGKNYPDGDFLDTNGNVIGRHKG 237 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 +I YT+GQR+GLG++ EPL+V ++ + V + + L + +IN + Sbjct: 238 VIRYTVGQRKGLGISAPEPLYVKAVNPVINTVTLSYNDGLYSSIVKAGDINLISV----P 293 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + K+R V +N D + F++ + V GQA V Y D+ V+ Sbjct: 294 EIKGEMRVKAKVRYRHTEQWATVTQNSDTITAVFDEPQRAVTCGQALVLYDGDT----VV 349 Query: 379 GGGII 383 GGG I Sbjct: 350 GGGTI 354 >gi|282901416|ref|ZP_06309341.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Cylindrospermopsis raciborskii CS-505] gi|281193695|gb|EFA68667.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Cylindrospermopsis raciborskii CS-505] Length = 350 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 149/367 (40%), Positives = 209/367 (56%), Gaps = 23/367 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VVV +SGGVDSSV AA+L GYDVIG+TL L K KG CC+ V DA +C Sbjct: 3 KKVVVGLSGGVDSSVAAAILHNQGYDVIGLTLWLM------KGKGQCCSEGMV-DAATIC 55 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139 +++ H + D + F+ ++ S Y+AG TPLPC CNRTVKF +L R+ LG+D Sbjct: 56 QQLSIPHEIVDMRDVFQTNIVDYLVSGYSAGITPLPCSQCNRTVKFGPMLEYAREKLGSD 115 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 V+ATGHY R D G R + R D +DQSYFL+ +Q+ L FPLG++ K Sbjct: 116 VIATGHYARIAY---DHGTERYQLLRAFDRNKDQSYFLYDLSQELLAGTIFPLGELNKND 172 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R +A E GL ADK +SQD+C V+ G + + + GDIV NG+ILG+H+G Sbjct: 173 TRKIAAEYGLKTADKPESQDLCLVESNGSMRAFLDKYL--VPKPGDIVDSNGKILGKHDG 230 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 + +YTIGQR+GLG+A EPL+V+ LD ++ V+VG R + +NW+ Sbjct: 231 VHHYTIGQRKGLGIAAAEPLYVIKLDTVNNLVVVGDRTKGTEKECTVERVNWVSMAEPRG 290 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + V+IR PV + + D V + F++ + + GQA V+Y D +V Sbjct: 291 TI----RGEVQIRYRSQPVLATIIPGETDCVQLVFDEPQFSITPGQAAVWYEGD----KV 342 Query: 378 LGGGIIS 384 LGGGII Sbjct: 343 LGGGIIK 349 >gi|294508524|ref|YP_003572583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1 [Salinibacter ruber M8] gi|294344853|emb|CBH25631.1| Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1 [Salinibacter ruber M8] Length = 383 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 141/373 (37%), Positives = 198/373 (53%), Gaps = 19/373 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG---SCCAGQDVYD 75 K RV+VAMSGGVDSSV A LLK GYDV+G+T++ ++ + R G CC+ + + D Sbjct: 3 KKGRVLVAMSGGVDSSVTAVLLKERGYDVVGLTMKTWDYSTSGGRDGKEVGCCSIESMND 62 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 AR V H+V D E F + VI F Y +G TP PCV CN +K+ LL Sbjct: 63 ARVVATEHGFPHFVVDLREEFGDWVIERFTDEYLSGRTPNPCVLCNTHIKWDALLQRADD 122 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L + +ATGHY R DD + R ++ R +D +DQSY L+ Q+ L FPLG Sbjct: 123 LDCEYIATGHYANVRY---DDERDRYLLSRGLDRNKDQSYALWGLPQEHLARSIFPLGAY 179 Query: 196 KKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQ 251 +K +R++A E GLD +ADK DS +ICF+ Y +K G+ E G V +G Sbjct: 180 EKPEIREMAAEFGLDNVADKPDSYEICFIPDNDYPRFLKDRVDGLEEEVSGGTFVLSDGT 239 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 ++G H+G YTIGQRRGL +A+GE ++V +D ++ + VGPRE L + EIN + Sbjct: 240 VVGEHDGYPFYTIGQRRGLDLALGERVYVTDIDPETNTITVGPREELMEQTLTAHEINLV 299 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTS 370 + IR + D Q ++D + V F + + + GQ+ V Y Sbjct: 300 KYPELDGERPAWGT----IRYNDDGAGCLAWQPDEDTLKVAFAEPKRAITPGQSLVLYED 355 Query: 371 DSNEARVLGGGII 383 D VLGGG I Sbjct: 356 DD----VLGGGWI 364 >gi|33519851|ref|NP_878683.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Blochmannia floridanus] gi|81657434|sp|Q7U353|MNMA_BLOFL RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|33504196|emb|CAD83458.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Blochmannia floridanus] Length = 369 Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats. Identities = 119/373 (31%), Positives = 195/373 (52%), Gaps = 28/373 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V +SGGVDSSV A LL++ GY V G+ ++ + + K C + +D+ DA +C Sbjct: 2 KKVIVGISGGVDSSVAAWLLQQQGYLVEGLFMKNWENDD---EKEYCSSEEDLSDAWSIC 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139 +T+ + + ++ + + V F +Y +G TP P V CN+ +KF L + LGAD Sbjct: 59 NTLKIPLHTVNFAQEYWENVFQVFLQAYQSGFTPNPDVLCNKEIKFKHFLDFALEDLGAD 118 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R + K++ + + +D +DQSYFL+ QQQL FP+G + K + Sbjct: 119 FIATGHYVRCM-----NVKKKITLMKGIDQNKDQSYFLYTLNQQQLKRCLFPIGSLTKLT 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A+E+ L A+K DS ICF+ + + + GDI++++G LG H GI Sbjct: 174 VRKIAKELNLITANKKDSTGICFIGKRNFRSFLSNYI--AIQPGDIINIHGNKLGLHQGI 231 Query: 260 INYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 YTIGQR+GL + G+P +VV + + +IV L +++I W+ Sbjct: 232 PFYTIGQRKGLNIGGISNGNGKPWYVVDKNITHNVLIVAQGINHPCLMSRIFIVQKIFWI 291 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTS 370 + + + +C VKIR Q V + D + + ++ +A GQ+ VFY Sbjct: 292 KGNILKSPI----QCSVKIRYQQSDVQCQIYPISVDTLKIILKQPVTAIAPGQSAVFY-- 345 Query: 371 DSNEARVLGGGII 383 + +GGG I Sbjct: 346 --IKKHCIGGGTI 356 >gi|255311088|ref|ZP_05353658.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis 6276] Length = 358 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 131/371 (35%), Positives = 189/371 (50%), Gaps = 29/371 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 V+VAMSGGVDSSVVA LLK+ G Y+V+G+ ++ + + + G C A +D D R+ Sbjct: 3 KTVIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN---GECTATKDFRDVERI 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + +++ +Y + + ++ V F YA G TP P V CNR +KF L R+L D Sbjct: 60 AEQLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGD 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 LATGHY R G DG + R +D +DQSYFL T + L ++ FPLG M K Sbjct: 120 FLATGHYCR----GGADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTE 172 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258 VR +A+E GL A K DS ICF+ + + +++ A GDI+ + Q++GRH G Sbjct: 173 VRRIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADS--PGDIIDFDTQQVVGRHEG 230 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDG 314 YTIGQRRGL + M +P +V+ + ++ V + L + +E+NW Sbjct: 231 AHYYTIGQRRGLNIGGMEKPCYVLSKNMENNIVYIVRGEDHPLLYRQELLAKELNWFV-- 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + + C K+R V +DG V V F+ V GQ FY D Sbjct: 289 ----PLQEPMICSAKVRYRSPDEKCSVYPLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI- 343 Query: 374 EARVLGGGIIS 384 LGGG+I Sbjct: 344 ---CLGGGVIE 351 >gi|189219049|ref|YP_001939690.1| tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase [Methylacidiphilum infernorum V4] gi|189185907|gb|ACD83092.1| tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase [Methylacidiphilum infernorum V4] Length = 367 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 133/379 (35%), Positives = 200/379 (52%), Gaps = 16/379 (4%) Query: 11 SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70 +++ K+ R+VV MSGGVDS+V A LLKR+G+DV+G+TL+++ R CC Sbjct: 2 PMNVAPIKKNTRIVVGMSGGVDSTVAAYLLKREGFDVVGITLKIWTDRCMHISSEKCCGP 61 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 + DAR + I + HYV D + F VI F Y+ G TP PCV CN +KF L Sbjct: 62 DAINDARNMAAQIGIPHYVLDEADCFEKEVISYFLREYSLGRTPNPCVKCNEKIKFGRLW 121 Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 + + G + LATGHY ++ + + D RDQSYFLF+ + QL + Sbjct: 122 TRVQSWGVEYLATGHYALV-----ENQDHIPRLKKAKDKRRDQSYFLFSLSAGQLSRMIT 176 Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHLN 249 PLG+++K+ VR +A+E GL++ +K +S+DICFV Y + ++ + G I+ Sbjct: 177 PLGNLEKKEVRAIAKEAGLNVWNKEESRDICFVPGKNYKEFIQGKKTPSNTHSGFIIDEE 236 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 G+++G H GI YT+GQR+GL G PL+VV +D S + G +SL Y + + Sbjct: 237 GKVIGEHQGIEGYTVGQRKGLPGGQGRPLYVVDIDPESKTIRAGSLKSLFKTHCYASQAH 296 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368 W+ E + VK+R + V + D +DF ++G++ GQA V Y Sbjct: 297 WI-----EKDIESPRPVTVKLRYNYPEVEALLTLLGKDRFRLDFSSPQMGISPGQAAVCY 351 Query: 369 TSDSNEARVLGGGIISGSK 387 D VLGGG I + Sbjct: 352 DGDI----VLGGGWIERER 366 >gi|21231412|ref|NP_637329.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768534|ref|YP_243296.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv. campestris str. 8004] gi|188991657|ref|YP_001903667.1| tRNA-specific 2-thiouridylase MnmA [Xanthomonas campestris pv. campestris str. B100] gi|24638306|sp|Q8P9A1|MNMA_XANCP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|81305494|sp|Q4UUJ7|MNMA_XANC8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205829008|sp|B0RT32|MNMA_XANCB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|21113079|gb|AAM41253.1| tRNA methyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573866|gb|AAY49276.1| tRNA methyltransferase [Xanthomonas campestris pv. campestris str. 8004] gi|167733417|emb|CAP51618.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase methyltransferase [Xanthomonas campestris pv. campestris] Length = 378 Score = 434 bits (1116), Expect = e-119, Method: Composition-based stats. Identities = 126/386 (32%), Positives = 184/386 (47%), Gaps = 31/386 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R +V +SGGVDSSV A L +DG + G+ +Q + A G C A D DA VC Sbjct: 5 RTIVGVSGGVDSSVAAWKLAQDGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + + V F + YAAG TP P V CNR VKF L + LGA+ + Sbjct: 61 VLGIPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLEAAQALGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R G R + R D +DQSYFL Q QL FP+G+++K ++R Sbjct: 121 ATGHYARVAHLGG-----RWRLLRGADRNKDQSYFLHQLGQSQLAATLFPIGELEKSALR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A++ GL K DS ICF+ + + + + R A G+I GQ + H G+ Sbjct: 176 RIAQDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313 +T+GQR GL + P +VV D S+ + V L+ + + +W+ Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVGSNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 F C + R Q P V DDG + V+FE+ + V GQ+ V Y + Sbjct: 294 A----PPARSFSCTAQTRYRQPDEPCTVTVQDDGTLQVNFERPQRAVTPGQSLVLYDGE- 348 Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398 LGG +I+ + DA E L+ Sbjct: 349 ---ECLGGAVIAAT---DAPLERQLA 368 >gi|319944511|ref|ZP_08018782.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lautropia mirabilis ATCC 51599] gi|319742224|gb|EFV94640.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lautropia mirabilis ATCC 51599] Length = 393 Score = 433 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 122/397 (30%), Positives = 177/397 (44%), Gaps = 52/397 (13%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 +VV +SGGVDS+V A LLK G+ V G+ ++ + S+ C + QD DA V D Sbjct: 13 IVVGLSGGVDSAVSAWLLKEAGWQVTGLFMKNWEDDDDSE---YCSSRQDWLDAASVADV 69 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I + ++ +R V F +Y AG TP P + CN +KF L LGA+ +A Sbjct: 70 IGIDLEAVNFAADYRERVFSLFLQAYEAGFTPNPDILCNAEIKFKAFLDHALALGAERIA 129 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY +R +G DG + R D +DQSYFL Q QL FPL + K VR+ Sbjct: 130 TGHYAGNR--IGPDG--LAQLLRGADANKDQSYFLHRLNQYQLSRAVFPLAGITKPEVRE 185 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A +GL A K DS ICF+ + + + + R G +V G +G H G+ Y Sbjct: 186 IAARIGLPNATKKDSTGICFIGERPFREFLSRYLP--TKPGPMVDDRGVQVGEHVGLSFY 243 Query: 263 TIGQRRGLGVAM------GEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313 T+GQR+G+G+ G P FV D S+ +IV L R+ R+++W+G Sbjct: 244 TLGQRKGIGIGGRRDNADGTPWFVAGKDLASNTLIVVRGHDHPLLLTQRLAARDVHWIGA 303 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFV-------------------------QRNDDGV 348 VK R Q +V ++ + Sbjct: 304 APEPGHPYG-----VKCRYRQQDAEGWVQSSSPEEGAATDATPAGASAAVTGAEKPPSRI 358 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385 V F + + V GQ+ VFY + LGG +I Sbjct: 359 EVGFAEPQWAVTPGQSVVFYDGEV----CLGGAVIDR 391 >gi|17228854|ref|NP_485402.1| tRNA-specific 2-thiouridylase MnmA [Nostoc sp. PCC 7120] gi|24638319|sp|Q8YX56|MNMA_ANASP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|17130706|dbj|BAB73316.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Nostoc sp. PCC 7120] Length = 352 Score = 433 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 143/367 (38%), Positives = 207/367 (56%), Gaps = 23/367 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VVV +SGGVDSS AA+L GY+VIG+TL L K KG CC+ + DA +C Sbjct: 2 KKVVVGLSGGVDSSTAAAILHNQGYEVIGLTLWLM------KGKGQCCSEGMI-DAAYIC 54 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139 + + + H V D + F+ ++ + Y AG TPLPC CN+TVKF ++ +LG D Sbjct: 55 EQLGIPHEVVDMRDVFQTHIVDYLVTGYGAGITPLPCSQCNKTVKFGPMVQYASEKLGCD 114 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R D+ R + R +D +DQSYFL+ +Q L FPLG+M+K Sbjct: 115 RIATGHYARIRY---DEATGRYQLLRAVDRNKDQSYFLYDLSQDLLAASLFPLGEMEKAD 171 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R +A E GL ADK +SQD+C V+ G + + A +GDIV G++LG+H+G Sbjct: 172 TRRIATEHGLKTADKPESQDLCLVESNGSMRAFLDKYIA--PKKGDIVDTAGKVLGQHDG 229 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 + +YTIGQR+GLG+A EPL+VV LD ++V+VG R + +NW+ Sbjct: 230 VHHYTIGQRKGLGIAAPEPLYVVELDAVHNKVVVGDRTKATQEECTVNRVNWVSIAEPST 289 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + V+IR P PV V ++ V + F++ + + GQA V+Y + +V Sbjct: 290 PI----RAAVQIRYRSAPEPVTVIPLENSRVRLVFDEPQFSITPGQAAVWYDGN----KV 341 Query: 378 LGGGIIS 384 LGGGII Sbjct: 342 LGGGIIE 348 >gi|260062425|ref|YP_003195505.1| tRNA-specific 2-thiouridylase MnmA [Robiginitalea biformata HTCC2501] gi|88783988|gb|EAR15159.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Robiginitalea biformata HTCC2501] Length = 399 Score = 433 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 121/402 (30%), Positives = 187/402 (46%), Gaps = 47/402 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV A LLK+ GY+VIG+ ++ ++ + C D DA V + Sbjct: 6 KVVVGLSGGVDSSVTALLLKQQGYEVIGLFMKNWHDDSVT-ISRECPWLDDSNDALIVAE 64 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + D ++ ++ Y G TP P V CNR +KF L + LGAD + Sbjct: 65 KLGIPFQTVDLSAAYKERIVNYMFREYQQGRTPNPDVLCNREIKFDLFLKIAMDLGADFV 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R G DG+ R + D +DQSYFL Q+QL FP+G ++K VR Sbjct: 125 ATGHYCRKDEATGPDGQVRYRLLAGADANKDQSYFLCQLNQEQLSRALFPIGHLQKSEVR 184 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------- 248 LA E GL ADK DSQ +CF+ + + + +++ EG IV + Sbjct: 185 ALAAENGLVTADKKDSQGLCFIGKVRLPEFLQQQLE--PREGRIVEIPATAPQYLREVPE 242 Query: 249 --------------------NGQILGRHNGIINYTIGQRRGL-GVAMGEPLFVVYLDKNS 287 +G+ +G H G +TIGQR+GL +PLFV+ D Sbjct: 243 FSNRREELAFYSEKPVYDPSDGRDVGLHQGAHYFTIGQRKGLDVGGTPDPLFVIQTDVAK 302 Query: 288 SRVIVGP---RESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ 342 + + G L +++ E++W+ L + + +IR Q + Sbjct: 303 NIIYTGQGKSHPGLYRRTLFVADDELHWVRPDLSLN-PDQTMEVQARIRYRQALQQATLY 361 Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + + G+YVDF + + + GQ +Y D ++G G+I+ Sbjct: 362 KIEGGLYVDFREPQSAITEGQFVAWYLGD----ELIGSGVIA 399 >gi|25298369|pir||C84960 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) [imported] - Buchnera sp. (strain APS) gi|10038936|dbj|BAB12971.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 392 Score = 433 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 121/371 (32%), Positives = 196/371 (52%), Gaps = 28/371 (7%) Query: 25 VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84 VAMSGGVDSSV A +LK+ Y V G+ ++ + +G C + +D+ DA +C +N Sbjct: 35 VAMSGGVDSSVCAWILKKQNYQVEGLFMKNWEEDDQ---EGYCSSTKDLLDAENICKKLN 91 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLAT 143 + + ++ + V F Y G TP P + CN+ +KF+ L+ + ++L AD +AT Sbjct: 92 IYLHKMNFSSEYWEYVFENFLKEYKKGNTPNPDILCNKEIKFNMFLNYSIQELKADYIAT 151 Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 GHY R + G + ++ + +D +DQSYFL+ QL + FP+G +KK VR++ Sbjct: 152 GHYARIKKING-----KYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLKKNKVRNI 206 Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263 A+++ L IA K DS ICF+ K + + + +GDIV ++G+++G+H+G+ YT Sbjct: 207 AKKIDLKIAKKKDSTGICFIGPKKLKNFLSLYISE--KKGDIVTISGRVIGKHSGVFYYT 264 Query: 264 IGQRRGLGVAM--GE---PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315 IGQR+GLG+ GE P +VV + + +IV + L + + INW+ Sbjct: 265 IGQRQGLGIGGIKGEYNIPWYVVEKNIEKNILIVAQGSYNKHLMSIGLIAKNINWIN--- 321 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 D + C K R Q + ++ N+ + + F+ V GQ+ VFY SD Sbjct: 322 -YDQLSFPLSCMAKTRYRQKDIICKIEYINNHHIKILFDCPVAAVTPGQSVVFYVSDI-- 378 Query: 375 ARVLGGGIISG 385 +GGGII Sbjct: 379 --CIGGGIIES 387 >gi|28952048|ref|NP_240085.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11135216|sp|P57349|MNMA_BUCAI RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 368 Score = 433 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 121/371 (32%), Positives = 196/371 (52%), Gaps = 28/371 (7%) Query: 25 VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84 VAMSGGVDSSV A +LK+ Y V G+ ++ + +G C + +D+ DA +C +N Sbjct: 11 VAMSGGVDSSVCAWILKKQNYQVEGLFMKNWEEDDQ---EGYCSSTKDLLDAENICKKLN 67 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLAT 143 + + ++ + V F Y G TP P + CN+ +KF+ L+ + ++L AD +AT Sbjct: 68 IYLHKMNFSSEYWEYVFENFLKEYKKGNTPNPDILCNKEIKFNMFLNYSIQELKADYIAT 127 Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 GHY R + G + ++ + +D +DQSYFL+ QL + FP+G +KK VR++ Sbjct: 128 GHYARIKKING-----KYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLKKNKVRNI 182 Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263 A+++ L IA K DS ICF+ K + + + +GDIV ++G+++G+H+G+ YT Sbjct: 183 AKKIDLKIAKKKDSTGICFIGPKKLKNFLSLYISE--KKGDIVTISGRVIGKHSGVFYYT 240 Query: 264 IGQRRGLGVAM--GE---PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315 IGQR+GLG+ GE P +VV + + +IV + L + + INW+ Sbjct: 241 IGQRQGLGIGGIKGEYNIPWYVVEKNIEKNILIVAQGSYNKHLMSIGLIAKNINWIN--- 297 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 D + C K R Q + ++ N+ + + F+ V GQ+ VFY SD Sbjct: 298 -YDQLSFPLSCMAKTRYRQKDIICKIEYINNHHIKILFDCPVAAVTPGQSVVFYVSDI-- 354 Query: 375 ARVLGGGIISG 385 +GGGII Sbjct: 355 --CIGGGIIES 363 >gi|331269731|ref|YP_004396223.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum BKT015925] gi|329126281|gb|AEB76226.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum BKT015925] Length = 346 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 120/367 (32%), Positives = 197/367 (53%), Gaps = 28/367 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + +V + +SGGVDSSV A LLK GYD+IG+T+++ + + DA +V Sbjct: 2 NKKVAIGLSGGVDSSVAAYLLKEKGYDLIGITMKVSDVDVS-------------EDAAKV 48 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + +++ +++ D + F+N VI FA Y G TP PC CN+ +KF LL ++LGAD Sbjct: 49 AEKLDIPYHILDLRDEFKNRVIDNFAEEYLQGRTPNPCAMCNKYIKFGVLLEKAKELGAD 108 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R ++ R ++ D ++DQ+Y ++ TQ L + P G+ K Sbjct: 109 YIATGHYARV-----EEHNGRYLVLNAKDDKKDQTYMFYSLTQDVLKHILMPCGEYTKVQ 163 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN-AGIALEGDIVHLNGQILGRHNG 258 +R++AR +GL++ DK +S DICF+ + ++ + G+ V G ILG+H G Sbjct: 164 IREIARNLGLEVHDKKESMDICFIPDNDHGKYIQGLECKNRIKAGNFVDKEGNILGKHKG 223 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 +I YTIGQR+GLG+++G+P FV+ + + V+VG + + +++N++ L E+ Sbjct: 224 LIYYTIGQRKGLGLSLGKPGFVIDIIPERNEVVVGDESEIFNSGLIAKDVNFIPFDLLEN 283 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + KIR S + +DG + V F + + GQ VFY D + Sbjct: 284 P----MEVEAKIRYSTTKSKATIIPFEDGKIKVMFNDKQRAITKGQRVVFYIQD----ML 335 Query: 378 LGGGIIS 384 +GGG I Sbjct: 336 VGGGTIE 342 >gi|311085999|gb|ADP66081.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086574|gb|ADP66655.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087155|gb|ADP67235.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087689|gb|ADP67768.1| tRNA-specific 2-thiouridylase MnmA [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 392 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 121/371 (32%), Positives = 196/371 (52%), Gaps = 28/371 (7%) Query: 25 VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84 VAMSGGVDSSV A +LK+ Y V G+ ++ + +G C + +D+ DA +C +N Sbjct: 35 VAMSGGVDSSVCAWILKKQNYQVEGLFMKNWEEDDQ---EGYCSSTKDLLDAENICKKLN 91 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLAT 143 + + ++ + V F Y G TP P + CN+ +KF+ L+ + ++L AD +AT Sbjct: 92 IYLHKMNFSSEYWEYVFENFLKEYKKGNTPNPDILCNKEIKFNMFLNYSIQELKADYIAT 151 Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 GHY R + G + ++ + +D +DQSYFL+ QL + FP+G +KK VR++ Sbjct: 152 GHYARIKKING-----KYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLKKNKVRNI 206 Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263 A+++ L IA K DS ICF+ K + + + +GDIV ++G+++G+H+G+ YT Sbjct: 207 AKKIDLKIAKKKDSTGICFIGPKKLKNFLSLYISE--KKGDIVTISGRVIGKHSGVFYYT 264 Query: 264 IGQRRGLGVAM--GE---PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315 IGQR+GLG+ GE P +VV + + +IV + L + + INW+ Sbjct: 265 IGQRQGLGIGGIKGEYNIPWYVVEKNIEKNILIVAQGSYNKHLMSIGLIAKNINWIN--- 321 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 D + C K R Q + ++ N+ + + F+ V GQ+ VFY SD Sbjct: 322 -YDQLSFPLSCMAKTRYRQKDIICKIEYINNHHIKILFDFPVAAVTPGQSVVFYVSDI-- 378 Query: 375 ARVLGGGIISG 385 +GGGII Sbjct: 379 --CIGGGIIES 387 >gi|219682184|ref|YP_002468568.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621917|gb|ACL30073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] Length = 368 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 121/371 (32%), Positives = 196/371 (52%), Gaps = 28/371 (7%) Query: 25 VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84 VAMSGGVDSSV A +LK+ Y V G+ ++ + +G C + +D+ DA +C +N Sbjct: 11 VAMSGGVDSSVCAWILKKQNYQVEGLFMKNWEEDDQ---EGYCSSTKDLLDAENICKKLN 67 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLAT 143 + + ++ + V F Y G TP P + CN+ +KF+ L+ + ++L AD +AT Sbjct: 68 IYLHKMNFSSEYWEYVFENFLKEYKKGNTPNPDILCNKEIKFNMFLNYSIQELKADYIAT 127 Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 GHY R + G + ++ + +D +DQSYFL+ QL + FP+G +KK VR++ Sbjct: 128 GHYARIKKING-----KYLLLKGIDTNKDQSYFLYTLNSIQLRKILFPIGHLKKNKVRNI 182 Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263 A+++ L IA K DS ICF+ K + + + +GDIV ++G+++G+H+G+ YT Sbjct: 183 AKKIDLKIAKKKDSTGICFIGPKKLKNFLSLYISE--KKGDIVTISGRVIGKHSGVFYYT 240 Query: 264 IGQRRGLGVAM--GE---PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315 IGQR+GLG+ GE P +VV + + +IV + L + + INW+ Sbjct: 241 IGQRQGLGIGGIKGEYNIPWYVVEKNIEKNILIVAQGSYNKHLMSIGLIAKNINWIN--- 297 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 D + C K R Q + ++ N+ + + F+ V GQ+ VFY SD Sbjct: 298 -YDQLSFPLSCMAKTRYRQKDIICKIEYINNHHIKILFDFPVAAVTPGQSVVFYVSDI-- 354 Query: 375 ARVLGGGIISG 385 +GGGII Sbjct: 355 --CIGGGIIES 363 >gi|293400445|ref|ZP_06644590.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305471|gb|EFE46715.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 391 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 118/378 (31%), Positives = 191/378 (50%), Gaps = 29/378 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73 +V++ +SGGVDS+V A +LK GYDV ++ ++S + G+ C QD Sbjct: 7 QKVLLGLSGGVDSAVAAYILKEQGYDVTCAFMRNWDSFANNDIMGNPTIQDDVCPQEQDY 66 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ V D + + D+ + + + V F Y G TP P + CN+ +KF + Sbjct: 67 LDAKAVADKLGLPLLRVDFVKEYWDNVFTYFLDEYRKGRTPNPDILCNKYIKFDAFMKYA 126 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 R+LG D+LATGHY + + M R D +DQ+YFL +Q L FP+G Sbjct: 127 RKLGFDILATGHYAQV-----EHTPLYSRMLRGADSNKDQTYFLCQVSQDALAHALFPIG 181 Query: 194 DMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-Q 251 ++ K VR++A+++ L+ +A K DS ICF+ + + + ++ + +GDIV ++ + Sbjct: 182 NLNKAEVREIAQKLELESVATKKDSTGICFIGERNFKEFLQNYLP--SQDGDIVDIHSLE 239 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVG---PRESLEVHRIYLRE 307 ++GRH G++ YTIGQR+GLG+ + P FVV D + + + V ++ L + Sbjct: 240 VIGRHIGVLYYTIGQRKGLGIGGNKGPWFVVGKDVHKNILYVTNGNEKDWLYSTSCIVSG 299 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366 +NWL E + + C K R Q + +Q D+ V V + + V GQ V Sbjct: 300 VNWLRPHKPE----NEYACTAKFRYRQQDHEISLQFIDETTVLVCYPQGVASVTCGQEAV 355 Query: 367 FYTSDSNEARVLGGGIIS 384 FY LGGG+I Sbjct: 356 FYDG----QECLGGGVIE 369 >gi|156741716|ref|YP_001431845.1| tRNA-specific 2-thiouridylase MnmA [Roseiflexus castenholzii DSM 13941] gi|156233044|gb|ABU57827.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Roseiflexus castenholzii DSM 13941] Length = 383 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 151/376 (40%), Positives = 211/376 (56%), Gaps = 20/376 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++++AMSGGVDSS+ AALL G+DV GVTL L+ + CC+ + ARRVC Sbjct: 15 KIMIAMSGGVDSSLAAALLHEAGHDVTGVTLHLWEGDDDRLAESLCCSQEMTESARRVCA 74 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + +YVF+Y+ FR +VI F YA+G TP PC++CNR +KF LL+ R LG D + Sbjct: 75 QLGIPYYVFNYQREFRRSVIEYFLREYASGFTPNPCLECNREIKFRALLARARALGFDYV 134 Query: 142 ATGHYIRSRL---------YVGDDGKRR--RIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 ATGHY R R+ +G +R + R +D E+DQSY L+ Q L L F Sbjct: 135 ATGHYARIRVDKTPADHSASPSPNGAQRAVYRLLRAVDEEKDQSYMLYMLGQDDLARLMF 194 Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250 P+G+ K VR LA GL A++ +SQDICFV G Y ++++ G I+ L G Sbjct: 195 PIGEYTKAEVRALAAARGLASANRPESQDICFVPGGDYRNLLREERPDALRPGPILDLEG 254 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 + +GRH G+ YTIGQRRGLG+A G+P++V+ LD + VIVGP +L + + + Sbjct: 255 REVGRHQGLPLYTIGQRRGLGIATGQPMYVMALDVARNAVIVGPESALRRTTLRAERVTF 314 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYT 369 + E F C +IR+ D VP V + + V V FE + + GQA VFY Sbjct: 315 VSGSWPE----APFDCLAQIRAHADAVPARVTPVEPERVEVRFEHPQRAITPGQAIVFYD 370 Query: 370 SDSNEARVLGGGIISG 385 A VLGGG I+ Sbjct: 371 G----AVVLGGGRIAR 382 >gi|15605008|ref|NP_219792.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis D/UW-3/CX] gi|237804632|ref|YP_002888786.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis B/TZ1A828/OT] gi|255317389|ref|ZP_05358635.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis 6276s] gi|6647880|sp|O84289|MNMA_CHLTR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|3328701|gb|AAC67880.1| PP-loop superfamily ATPase [Chlamydia trachomatis D/UW-3/CX] gi|231272932|emb|CAX09843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydia trachomatis B/TZ1A828/OT] gi|296436728|gb|ADH18898.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis G/11222] gi|297748416|gb|ADI50962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydia trachomatis D-EC] gi|297749296|gb|ADI51974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydia trachomatis D-LC] Length = 358 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 131/371 (35%), Positives = 188/371 (50%), Gaps = 29/371 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 V+VAMSGGVDSSVVA LLK+ G Y+V+G+ ++ + + + G C A +D D R+ Sbjct: 3 KTVIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN---GECTATKDFRDVERI 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + +++ +Y + + ++ V F YA G TP P V CNR +KF L R+L D Sbjct: 60 AEQLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGD 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 LATGHY R G DG + R +D +DQSYFL T + L ++ FPLG M K Sbjct: 120 FLATGHYCR----GGADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTE 172 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258 VR +A+E GL A K DS ICF+ + + +++ A GDI+ + Q++GRH G Sbjct: 173 VRRIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADS--PGDIIDFDTQQVVGRHEG 230 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDG 314 YTIGQRRGL + M +P +V+ + + V + L + +E+NW Sbjct: 231 AHYYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYRQELLAKELNWFV-- 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + + C K+R V +DG V V F+ V GQ FY D Sbjct: 289 ----PLQEPMICSAKVRYRSPDEKCSVYPLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI- 343 Query: 374 EARVLGGGIIS 384 LGGG+I Sbjct: 344 ---CLGGGVIE 351 >gi|126661854|ref|ZP_01732853.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase [Flavobacteria bacterium BAL38] gi|126625233|gb|EAZ95922.1| (5-methylaminomethyl-2-thiouridylate)-methyltran sferase [Flavobacteria bacterium BAL38] Length = 395 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 118/403 (29%), Positives = 194/403 (48%), Gaps = 48/403 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RVVV +SGGVDSSV A LLK GY+VIG+ ++ ++ + C +D DA V Sbjct: 2 KRVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVT-ISNECPWLEDSNDALLVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + D E+++ ++ + Y G TP P V CNR +KF + + LGAD Sbjct: 61 EKLGIPFQTVDLSEQYKEKIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMKIAMSLGADY 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + ++GK + D +DQSYFL +Q QL FP+G++ K V Sbjct: 121 VATGHYCR-KGTIEENGKEVFQLLAGKDDNKDQSYFLCQLSQDQLAKALFPIGELTKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH------------- 247 R++A ++ L A+K DSQ +CF+ + + + +++ EG IV Sbjct: 180 REIATKLDLITAEKKDSQGLCFIGKVRLPEFLQQKLQ--PKEGIIVEIPADATVFNQEKP 237 Query: 248 --------------------LNGQILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLDKN 286 + G+++G+H G +T GQR+GL EPLF++ D Sbjct: 238 HFNSNEEAFAFEAKRIDYLKVPGKVMGKHQGAHYFTKGQRKGLNVGGTKEPLFIIETDVE 297 Query: 287 SSRVIVGP---RESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341 + + G L +++ E++W+ + L + + +IR Q + Sbjct: 298 KNIIYTGQGNNHPGLFKKALFIANNEVHWIREDL-SLKEGETLEVMARIRYRQPLQKATL 356 Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + DG+YV FEK + + GQ ++ +D VLG G+I+ Sbjct: 357 HQFKDGMYVVFEKPQSAITEGQFVAWHHND----EVLGSGVIA 395 >gi|16330399|ref|NP_441127.1| tRNA-specific 2-thiouridylase MnmA [Synechocystis sp. PCC 6803] gi|3122978|sp|P73755|MNMA_SYNY3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|1652889|dbj|BAA17807.1| sll0844 [Synechocystis sp. PCC 6803] Length = 358 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 153/366 (41%), Positives = 211/366 (57%), Gaps = 23/366 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VVV +SGGVDSSV AALL R GY V+GVTL L K KG CC+ + + DA +C Sbjct: 3 QKVVVGLSGGVDSSVAAALLHRQGYAVVGVTLWLM------KGKGQCCS-EGLVDAASIC 55 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139 + + V H + D + F+N +I Y G TPLPC CN+ VKF +L +Q LG D Sbjct: 56 EQLGVPHEIVDTRDLFQNHIIDYLVQGYGEGVTPLPCSQCNKAVKFGPMLQYAQQSLGID 115 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R ++ +R + R +D ++DQSYFL+ +Q+ L FPLG+ K Sbjct: 116 KIATGHYARIRF---NEASQRYELLRAVDRQKDQSYFLYDLSQEILAATLFPLGEQTKTV 172 Query: 200 VRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R LA E L A+K DSQD+C ++ G D + + A G+IV L+G +LG H G Sbjct: 173 TRQLAAEFDLSTAEKKDSQDLCLIEAHGSMRDFLDKYIA--PKAGEIVDLSGAVLGHHEG 230 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I +YTIGQR+GLG+A EPL+VV LD +RVIVG R+S Y++ +NW+ Sbjct: 231 IHHYTIGQRKGLGIAAAEPLYVVKLDPVMNRVIVGDRQSAGSGECYVQRLNWVSI----P 286 Query: 319 AVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 +C V++R PV V + +D + + F++ + G+ GQA V Y D RV Sbjct: 287 EPTAPIRCEVQVRYRSAPVTVNAIPWHDQQIKLVFDEPQFGITPGQAAVLYDGD----RV 342 Query: 378 LGGGII 383 LGGGII Sbjct: 343 LGGGII 348 >gi|225012689|ref|ZP_03703124.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Flavobacteria bacterium MS024-2A] gi|225003222|gb|EEG41197.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Flavobacteria bacterium MS024-2A] Length = 394 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 119/400 (29%), Positives = 195/400 (48%), Gaps = 43/400 (10%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 R++V +SGGVDSSV A LLK++GY+VIG+ ++ ++ + C +D DA V Sbjct: 3 KGRIIVGLSGGVDSSVAAYLLKKEGYEVIGLFMKNWHDETVT-LSNECPWLEDSNDAMLV 61 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + + D + ++ ++ Y+ G TP P V CNR +KF L + LGAD Sbjct: 62 AEKLGIPFQTVDLSKEYKERIVDYMFDEYSKGRTPNPDVLCNREIKFDVFLEIALSLGAD 121 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + + G + D +DQSYFL Q+QL + FP+G ++KE Sbjct: 122 YVATGHYCQKTFFATPSGDHIHQLKSGADNNKDQSYFLCQLNQKQLSHVLFPIGHLQKEE 181 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL----------- 248 VR +A E L ADK DSQ +CF+ + + D +++ + +G I+ + Sbjct: 182 VRKIALEQDLVTADKKDSQGLCFIGKVRLPDFLQQQLK--SKKGSIIEISTDFSVYAGSE 239 Query: 249 ------------------NGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSR 289 +G I+G HNG YT+GQR+GLGV EPLFV+ + + + Sbjct: 240 TSHKDLINRAKKVRYQPTDGAIVGEHNGAHFYTVGQRKGLGVGGNVEPLFVIDTNVDDNT 299 Query: 290 VIVGP---RESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN 344 + VG L + + + +I+W+ L + +IR Q + + Sbjct: 300 IYVGQGKEHPGLYRYALAVAQEDIHWVRGDLAL-RPGETLSIQARIRYRQALQKATLFQT 358 Query: 345 DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + +YV F++ + + SGQ +Y +E +LG G+I+ Sbjct: 359 ESALYVSFDEPQSAITSGQFVAWY----HEKELLGSGVIT 394 >gi|313674593|ref|YP_004052589.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Marivirga tractuosa DSM 4126] gi|312941291|gb|ADR20481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Marivirga tractuosa DSM 4126] Length = 378 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 139/386 (36%), Positives = 211/386 (54%), Gaps = 19/386 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76 K RV+VAMSGG+DSS+ A LL GY+VIG+T++ ++ S +SK++ CC+ + DA Sbjct: 3 KKGRVLVAMSGGIDSSLAAVLLHEQGYEVIGMTMKTWDYASSGSSKKETGCCSLDSINDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + + HY+ D E F + VI F Y AG TP PCV CN +K+ LL +L Sbjct: 63 RNLAVNLGFPHYILDIREEFGDYVIDHFTDEYLAGRTPNPCVLCNTHIKWDSLLRRADKL 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 G D +ATGHY + R + R I+ R DL +DQSY L+ +Q+ L PLGD+ Sbjct: 123 GCDYIATGHYAKVR-----EENGRYIISRGKDLNKDQSYALWGVSQESLSRTILPLGDLT 177 Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252 K +R +A + G ++ +KS+S +ICFV Y +KR G+ E G+ V +G + Sbjct: 178 KPEIRKMAEDKGFYELVNKSESYEICFVPDNDYRGFLKRRVEGLEEEVKGGEFVLEDGTV 237 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G H G YT+GQR+GLG+A+G P++V + K+ +RV++G + L +Y++ + Sbjct: 238 VGTHEGYPFYTVGQRKGLGIALGYPVYVTEIQKDKNRVVLGTFDELSRDGMYVKNLV--- 294 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 ++ D K+R + D P +++ D + V F +A GQA VFY D Sbjct: 295 -MSKYTSLEDRLDTVTKVRYNDDGAPAVIEQVGDTMKVFFGNGVPAIAPGQAAVFYEGDD 353 Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398 V+GGG I S ++ LS Sbjct: 354 ----VIGGGWIHSSFNQQKLKNEALS 375 >gi|89890355|ref|ZP_01201865.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Flavobacteria bacterium BBFL7] gi|89517270|gb|EAS19927.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Flavobacteria bacterium BBFL7] Length = 392 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 119/399 (29%), Positives = 186/399 (46%), Gaps = 45/399 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV A LLK G++VIG+ ++ ++ + C +D DA V D Sbjct: 3 KVVVGLSGGVDSSVAAYLLKEQGHEVIGLFMKNWHDDTVT-ISDECPWLEDSNDAMLVAD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + D E+++ ++ YA G TP P V CNR +KF + + +LGAD + Sbjct: 62 KLGIPFQTVDLSEQYKERIVDYMFDEYARGRTPNPDVLCNREIKFDVFMDIALELGADYV 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + + DGK + DL +DQSYFL +Q+QL FP+G ++K VR Sbjct: 122 ATGHYCQKTTTMI-DGKEIHHLIGGADLNKDQSYFLCQVSQEQLARTIFPIGHLQKPEVR 180 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------- 248 ++A L A K DSQ +CF+ + + D +++ GDI+ + Sbjct: 181 EIAASQDLITAGKKDSQGLCFIGKVRLPDFLQQQLK--PKTGDIIEIPAQVSMDKAVVVN 238 Query: 249 -----------------NGQILGRHNGIINYTIGQRRGL-GVAMGEPLFVVYLDKNSSRV 290 G+ LG H G +T GQR+GL PLFV+ D S+ + Sbjct: 239 DEDALVTLSRKRHYQAHEGKKLGTHQGAHYFTRGQRKGLAVGGTPLPLFVIETDVESNTI 298 Query: 291 IVG---PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND 345 VG L +++ E++W+ + L + +IR Q + D Sbjct: 299 FVGQGKQHPGLYRRGLFIDKSELHWIREDLAL-KSGEKMDVMARIRYRQTLEKAVLHIVD 357 Query: 346 DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 G Y+ F+ + ++ GQ +Y + LG G+IS Sbjct: 358 QGAYLIFDTPQSAISPGQFAAWYQDN----ECLGSGVIS 392 >gi|325955195|ref|YP_004238855.1| tRNA-specific 2-thiouridylase mnmA [Weeksella virosa DSM 16922] gi|323437813|gb|ADX68277.1| tRNA-specific 2-thiouridylase mnmA [Weeksella virosa DSM 16922] Length = 397 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 119/402 (29%), Positives = 193/402 (48%), Gaps = 47/402 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RVVV +SGGVDSSV A LLK GY+VIG+ ++ +N + C +D DA Sbjct: 2 KRVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMRNWNDASVTLED-ECPWIEDSADALLTA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + +N+ V D ++ ++ + Y G TP P V CNR +KF L +LGAD Sbjct: 61 EKLNIPFQVIDMSASYKERIVDYMFAEYEQGRTPNPDVLCNREIKFDLFLKTALELGADY 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R ++ +GK + + +D +DQSYFL +Q+QL FP+G+++K V Sbjct: 121 VATGHYARKNSFIDKNGKEIFQLIKGVDNNKDQSYFLCQLSQEQLSKALFPIGNLEKSEV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248 R +A+ + L ADK DSQ +CF+ + + +++ +G I+ + Sbjct: 181 RRIAKNLDLVTADKKDSQGLCFIGKVSLPEFLQQQL--RPKKGKIIEIPKSSSIYQKEEK 238 Query: 249 ---------------------NGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKN 286 +G+I+G H G +T GQR+GLGV EPLFV+ D Sbjct: 239 HFPTIEKKLENQAAAISYKKTDGEIVGEHQGAHFFTRGQRKGLGVGGKAEPLFVLATDVQ 298 Query: 287 SSRVIVGP---RESLEVHRIY--LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341 + + G L ++ EI+W+ + + + + +IR Q + Sbjct: 299 ENIIYTGQGHDHPGLLKDALFIQADEIHWIREDMAL-KEGESLEVQARIRYRQPLQKATL 357 Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 + +G++V F+ + + GQ C +Y D ++G G+I Sbjct: 358 HQTKNGLFVAFDTPQSAITEGQFCAWYIED----ELVGSGVI 395 >gi|255348647|ref|ZP_05380654.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis 70] gi|255503187|ref|ZP_05381577.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis 70s] Length = 358 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 130/371 (35%), Positives = 188/371 (50%), Gaps = 29/371 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 ++VAMSGGVDSSVVA LLK+ G Y+V+G+ ++ + + + G C A +D D R+ Sbjct: 3 KTIIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN---GECTATKDFRDVERI 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + +++ +Y + + ++ V F YA G TP P V CNR +KF L R+L D Sbjct: 60 AEQLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGD 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 LATGHY R G DG + R +D +DQSYFL T + L ++ FPLG M K Sbjct: 120 FLATGHYCR----GGADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTE 172 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258 VR +A+E GL A K DS ICF+ + + +++ A GDI+ + Q++GRH G Sbjct: 173 VRRIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADS--PGDIIDFDTQQVVGRHEG 230 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDG 314 YTIGQRRGL + M +P +V+ + + V + L + +E+NW Sbjct: 231 AHYYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYRQELLAKELNWFV-- 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + + C K+R V +DG V V F+ V GQ FY D Sbjct: 289 ----PLQEPMICSAKVRYRSPDEKCSVYPLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI- 343 Query: 374 EARVLGGGIIS 384 LGGG+I Sbjct: 344 ---CLGGGVIE 351 >gi|146277942|ref|YP_001168101.1| tRNA-specific 2-thiouridylase MnmA [Rhodobacter sphaeroides ATCC 17025] gi|205817026|sp|A4WTT2|MNMA_RHOS5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|145556183|gb|ABP70796.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacter sphaeroides ATCC 17025] Length = 378 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 190/379 (50%), Positives = 241/379 (63%), Gaps = 12/379 (3%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 LNSL K P RVVVAMSGGVDSSVVAA L DGYDV+GVTLQLY+ A +KG+C Sbjct: 5 PLNSLGFAKPPSATRVVVAMSGGVDSSVVAAELAADGYDVVGVTLQLYDHGAALAKKGAC 64 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 CAG+D++DARRV +T+ HYV DYE FR AVI FA +Y AG TP+PC+ CN VKF Sbjct: 65 CAGRDIHDARRVAETMGFPHYVLDYENTFREAVIDEFADAYLAGATPVPCIRCNERVKFK 124 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL + L AD +ATGHYI+ ++ G + D RDQSYFLF+TT++QL Sbjct: 125 DLLQTAKDLDADCMATGHYIQRKM-----GAAGPELHCAADAARDQSYFLFSTTREQLDY 179 Query: 188 LRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 LRFPLG + K R LA GL +ADK DSQDICFV G Y V++++ G A G+IV Sbjct: 180 LRFPLGHLASKAETRALAARHGLPVADKPDSQDICFVPNGNYAAVIEKLRPGAADPGEIV 239 Query: 247 HLNGQILGRHNGIINYTIGQ-RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 L G +LG H G+I+YTIGQ R +G+PLFVV LD +VIVGPRE+L + + Sbjct: 240 DLAGNVLGAHRGVIHYTIGQRRGLGIGGLGDPLFVVRLDPERRQVIVGPREALSTRIVPV 299 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQA 364 REINWLGD ++ K+RS++ P ++ +D V+ E GV+ GQA Sbjct: 300 REINWLGDAPLTSQA--EWQVMAKVRSTRAPREAVIRPISDTEAEVELIAPEDGVSPGQA 357 Query: 365 CVFYTSDSNEARVLGGGII 383 CVF+ ++R+LGGG I Sbjct: 358 CVFHV--PGDSRILGGGWI 374 >gi|149372147|ref|ZP_01891417.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [unidentified eubacterium SCB49] gi|149354914|gb|EDM43476.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [unidentified eubacterium SCB49] Length = 418 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 123/407 (30%), Positives = 188/407 (46%), Gaps = 49/407 (12%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K RVVV +SGGVDSSV A LLK GY+VIG+ ++ ++ + C D DA Sbjct: 20 KKKRVVVGLSGGVDSSVTAYLLKEQGYEVIGLFMKNWHDDSVT-ISDECPWLDDSNDAML 78 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V +++ D ++ ++ Y G TP P V CNR +KF L + +LGA Sbjct: 79 VAQALDIPFQTVDLSAEYKERIVDYMFREYKMGRTPNPDVLCNREIKFDVFLKIALELGA 138 Query: 139 DVLATGHYIR--SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 D +ATGHY R DGK + D +DQSYFL +Q+QL FP+G++ Sbjct: 139 DFVATGHYCRKGISQETTADGKPIYQLLSGKDSNKDQSYFLCQLSQEQLSKTLFPIGELL 198 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-------- 248 K VR +A L A+K DSQ +CF+ + + + +++ A EG IV + Sbjct: 199 KPEVRKIAAAQNLITAEKRDSQGLCFIGKVRLPEFLQQQLA--PKEGVIVEIPADSEVYQ 256 Query: 249 -------------------------NGQILGRHNGIINYTIGQRRGL-GVAMGEPLFVVY 282 +G+ +G H G +T GQR+GL E LFV+ Sbjct: 257 KKDVSFSSETEALKSLSSKQTYSVSDGKKVGTHQGAHYFTKGQRKGLAVGGTKEALFVID 316 Query: 283 LDKNSSRVIVGP---RESLEVHRIY--LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPV 337 D + V G L ++ EI+W+ L + + + + +IR Q Sbjct: 317 TDVKENVVYTGQGKTHPGLYRRGLFIQADEIHWVRQDLAIE-IGEKMEVEARIRYRQPLE 375 Query: 338 PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + R +DG+YV FE ++ +A GQ +Y ++ ++G G+IS Sbjct: 376 KATLHRVEDGLYVIFENAQSAIAEGQFAAWYKNE----ELIGSGVIS 418 >gi|83816248|ref|YP_446592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salinibacter ruber DSM 13855] gi|123528021|sp|Q2RZN9|MNMA_SALRD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|83757642|gb|ABC45755.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salinibacter ruber DSM 13855] Length = 383 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 139/373 (37%), Positives = 198/373 (53%), Gaps = 19/373 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG---SCCAGQDVYD 75 K RV+VAMSGGVDSSV A LLK GYDV+G+T++ ++ + R G CC+ + + D Sbjct: 3 KKGRVLVAMSGGVDSSVTAVLLKERGYDVVGLTMKTWDYSTSGGRDGKEVGCCSIESMND 62 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 AR V H+V D E F + VI F Y +G TP PCV CN +K+ LL Sbjct: 63 ARVVATEHGFPHFVVDLREEFGDWVIERFTDEYLSGRTPNPCVLCNTHIKWDALLQRADD 122 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L + +ATGHY R DD + R ++ R +D +DQSY L+ Q+ L FPLG Sbjct: 123 LDCEYIATGHYANVRY---DDERDRYLLSRGLDRNKDQSYALWGLPQEHLARSIFPLGAY 179 Query: 196 KKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQ 251 +K +R++A E GLD +ADK DS +ICF+ Y +K G+ E G V +G Sbjct: 180 EKPEIREMAAEFGLDNVADKPDSYEICFIPDNDYPRFLKDRVDGLEEEVSGGTFVLSDGT 239 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 ++G H+G YTIGQRRGL +A+GE ++V +D ++ + VGP+E L + EIN + Sbjct: 240 VVGEHDGYPFYTIGQRRGLDLALGERVYVTDIDPETNTITVGPKEELMEQTLTAHEINLV 299 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTS 370 + IR + D Q ++D + V F + + + GQ+ V Y Sbjct: 300 KYPELDGERPAWGT----IRYNDDGAGCLAWQPDEDTLKVAFAEPKRAITPGQSLVLYED 355 Query: 371 DSNEARVLGGGII 383 + VLGGG I Sbjct: 356 ED----VLGGGWI 364 >gi|205822073|sp|A7NK07|MNMA_ROSCS RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 371 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 151/376 (40%), Positives = 211/376 (56%), Gaps = 20/376 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++++AMSGGVDSS+ AALL G+DV GVTL L+ + CC+ + ARRVC Sbjct: 3 KIMIAMSGGVDSSLAAALLHEAGHDVTGVTLHLWEGDDDRLAESLCCSQEMTESARRVCA 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + +YVF+Y+ FR +VI F YA+G TP PC++CNR +KF LL+ R LG D + Sbjct: 63 QLGIPYYVFNYQREFRRSVIEYFLREYASGFTPNPCLECNREIKFRALLARARALGFDYV 122 Query: 142 ATGHYIRSRL---------YVGDDGKRR--RIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 ATGHY R R+ +G +R + R +D E+DQSY L+ Q L L F Sbjct: 123 ATGHYARIRVDKTPADHSASPSPNGAQRAVYRLLRAVDEEKDQSYMLYMLGQDDLARLMF 182 Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250 P+G+ K VR LA GL A++ +SQDICFV G Y ++++ G I+ L G Sbjct: 183 PIGEYTKAEVRALAAARGLASANRPESQDICFVPGGDYRNLLREERPDALRPGPILDLEG 242 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 + +GRH G+ YTIGQRRGLG+A G+P++V+ LD + VIVGP +L + + + Sbjct: 243 REVGRHQGLPLYTIGQRRGLGIATGQPMYVMALDVARNAVIVGPESALRRTTLRAERVTF 302 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYT 369 + E F C +IR+ D VP V + + V V FE + + GQA VFY Sbjct: 303 VSGSWPE----APFDCLAQIRAHADAVPARVTPVEPERVEVRFEHPQRAITPGQAIVFYD 358 Query: 370 SDSNEARVLGGGIISG 385 A VLGGG I+ Sbjct: 359 G----AVVLGGGRIAR 370 >gi|313899166|ref|ZP_07832687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium sp. HGF2] gi|312956035|gb|EFR37682.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium sp. HGF2] Length = 393 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 119/384 (30%), Positives = 188/384 (48%), Gaps = 29/384 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73 +V++ +SGGVDS+V A LLK GYDV ++ ++S + G+ C QD Sbjct: 10 QKVLLGLSGGVDSAVAAYLLKEQGYDVTCAFMRNWDSFANNDIMGNPTIQDDVCPQEQDY 69 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ V D + + D+ + + + V F Y G TP P + CN+ +KF + Sbjct: 70 LDAKAVADKLGLPLLRVDFVKEYWDHVFTYFLEEYRKGRTPNPDILCNKYIKFDAFMDYA 129 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 R+LG D LATGHY + D M R D +DQ+YFL +Q L FP+G Sbjct: 130 RRLGFDTLATGHYAQV-----DHSAEESRMLRGADNNKDQTYFLCQVSQDALRHSMFPIG 184 Query: 194 DMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-Q 251 M+K+ VR++A M L +A+K DS ICF+ + + + +K + +GDI+ + + Sbjct: 185 HMEKQEVREIAERMELNSVAEKKDSTGICFIGERNFKEFLKNYLP--SRDGDIMDIKTLE 242 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307 ++GRH+G++ YTIGQR+GLG+ P FVV D + + V + L + Sbjct: 243 VVGRHSGVLYYTIGQRKGLGIGGNRGPWFVVGKDVQKNILYVTNGSESDWLHSDSCIVSG 302 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366 +NW + + C K R Q V ++ D+ V++ + + V +GQ V Sbjct: 303 VNWFS----SERPQGDYVCTAKFRYRQPDNDVILRFIDETTVFLRYPQMVSSVTAGQEAV 358 Query: 367 FYTSDSNEARVLGGGIISGSKRSD 390 FY + LGGG+I + Sbjct: 359 FYQKE----ECLGGGVIEDVFKEG 378 >gi|167772092|ref|ZP_02444145.1| hypothetical protein ANACOL_03466 [Anaerotruncus colihominis DSM 17241] gi|167665890|gb|EDS10020.1| hypothetical protein ANACOL_03466 [Anaerotruncus colihominis DSM 17241] Length = 349 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 141/365 (38%), Positives = 196/365 (53%), Gaps = 22/365 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V+VAMSGGVDSSV A LLKR GY+V G T +L+N C +V DAR VCD Sbjct: 5 VLVAMSGGVDSSVAALLLKRQGYEVAGATFELFN----------GCPEGNVRDARAVCDC 54 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + HYVFDY F+ V+ F SY G+TP PCV CNR+VKF L +LG ++ Sbjct: 55 LGIRHYVFDYRALFQKRVLEHFVDSYLTGKTPNPCVACNRSVKFGAFLQDAMRLGYTHIS 114 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY D R + R +DQSY L+ +Q+QL L P+ K+ VR Sbjct: 115 TGHYAGVAY---DQTAGRYCLQRSRQTRKDQSYVLYHLSQEQLSRLLLPVDGYTKDEVRA 171 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 A E GL + K+DSQDICFV G Y ++R + G+ + G+++GRH G+++Y Sbjct: 172 FAAEAGLPVQAKADSQDICFVPDGDYAAFIERYTGQASEPGNFIDDEGRVIGRHRGVLHY 231 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQRRGLGVA G +V LD ++ V + S+ ++ ++ + + E Sbjct: 232 TIGQRRGLGVAFGTHRYVRRLDPGANTVTLSDESSVFCDQLIADDLRLIAFDVLETP--- 288 Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + KIR + P P + D+G ++V F+ + + GQA VFY D RVLGG Sbjct: 289 -LRACAKIRYAHTPAPATITMLDEGRIHVRFDTPQRAITPGQAVVFYDDD----RVLGGA 343 Query: 382 IISGS 386 I + Sbjct: 344 TIVTA 348 >gi|218439179|ref|YP_002377508.1| tRNA-specific 2-thiouridylase MnmA [Cyanothece sp. PCC 7424] gi|226704768|sp|B7KHE5|MNMA_CYAP7 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|218171907|gb|ACK70640.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cyanothece sp. PCC 7424] Length = 349 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 149/367 (40%), Positives = 201/367 (54%), Gaps = 23/367 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDSS AA L GYDV+G+TL L K KG CC+ V DA +C+ Sbjct: 3 RVVVGLSGGVDSSTAAASLHHQGYDVVGLTLWLM------KGKGQCCSEGMV-DAAFICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140 + + H++ D + F +I S Y G TPLPC CNR VKF +L+ R +LG D Sbjct: 56 QLGIPHHIVDSRDVFEKNIIDYLVSGYEVGITPLPCSQCNRAVKFGPMLNYARQELGIDR 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R D+ R + R +D +DQSYFL+ TQ L FPLG+ KE Sbjct: 116 IATGHYARIGY---DEVSGRYQLLRAVDRNKDQSYFLYDLTQDLLAATLFPLGNQTKEET 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R +A E GL ADK +SQD+C ++ G + + + EGDIV L G++LG+H GI Sbjct: 173 RRIAHEFGLKTADKPESQDLCLIEAHGSMQEFLDKYIKQ--KEGDIVDLKGKVLGKHKGI 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQR+GLGVA EPL+VV LD +RVIVG R + +NW+ Sbjct: 231 HHYTIGQRKGLGVAAPEPLYVVKLDPIMNRVIVGNRADAGQSECNVSRMNWVSIPDPSTP 290 Query: 320 VVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + ++R PV V + D+ + + F++ + G+ GQA V Y D +L Sbjct: 291 IQTE----AQVRYRSFPVRVNVIPLGDNRITLVFDEPQFGITPGQAAVLYQGDI----LL 342 Query: 379 GGGIISG 385 GGGII Sbjct: 343 GGGIIEK 349 >gi|108756833|ref|YP_631693.1| tRNA-specific 2-thiouridylase MnmA [Myxococcus xanthus DK 1622] gi|123374481|sp|Q1D6N0|MNMA_MYXXD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|108460713|gb|ABF85898.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Myxococcus xanthus DK 1622] Length = 348 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 158/364 (43%), Positives = 203/364 (55%), Gaps = 18/364 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MRVVVAMSGGVDSS AALLK G++VIG+TL+++ S + GSCC+ D+ DAR V Sbjct: 1 MRVVVAMSGGVDSSAAAALLKEQGHEVIGITLRVW-SYEGKATCGSCCSPDDIDDARAVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 T+ + YV + EE F++ VI PF SY G TP+PCV CNR VKF+ LL R LGA Sbjct: 60 QTLGIPFYVANAEEIFQDRVINPFVQSYLGGRTPIPCVACNRDVKFNFLLKRARALGA-R 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R G R ++ R +D +DQSYFLF Q +L D+ FP+G M K V Sbjct: 119 LATGHYARVEEVDG-----RFVLRRAVDAAKDQSYFLFTLGQDELRDILFPVGGMTKAEV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A GL + K +S +ICFV G Y V+++ AG GDIV G +LG H GI Sbjct: 174 RAVAERHGLVTSQKPESMEICFVPDGDYAGFVEKV-AGPQPAGDIVDTEGNVLGTHQGIH 232 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YT+GQR+GL + GE +V L+ + RV+VGP E L + +W+ Sbjct: 233 RYTVGQRKGLNLGGGEIRYVHRLEPETQRVVVGPAEGTGRDNFGLLQPHWVDGPPPASQP 292 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 V+ V+IR V + G V V + V GQA V Y D RVLG Sbjct: 293 VE-----VRIRHRHSGAQGRVHVSPHGLVSVKLDAPARAVTPGQAAVVYDQD----RVLG 343 Query: 380 GGII 383 GG I Sbjct: 344 GGWI 347 >gi|56752503|ref|YP_173204.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus elongatus PCC 6301] gi|81300318|ref|YP_400526.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus elongatus PCC 7942] gi|81561195|sp|Q5MZ36|MNMA_SYNP6 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|123556790|sp|Q31N30|MNMA_SYNE7 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|56687462|dbj|BAD80684.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Synechococcus elongatus PCC 6301] gi|81169199|gb|ABB57539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus elongatus PCC 7942] Length = 357 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 146/371 (39%), Positives = 207/371 (55%), Gaps = 23/371 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDSSV AALL R GY V G+TL L K KG CC+ V DA +C+ Sbjct: 3 RVVVGLSGGVDSSVAAALLHRQGYAVEGLTLWLM------KGKGQCCSEGMV-DAAGICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140 + V ++V D +RF+ A++ Y AG TPLPC CNR VKF +L + +L AD Sbjct: 56 QMGVPYHVVDSRDRFQEAIVDYVVQGYEAGITPLPCSQCNRAVKFGPMLDYAKTELKADA 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R + R + R +D +DQ+YFL+ Q L ++FPLG++ K Sbjct: 116 IATGHYARLR---QNPETGRTELLRAVDRNKDQTYFLYDLPQSVLQSVKFPLGELTKPET 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R +A E+GL A+K +SQD+C + G + R + EG+IV +G++LG+H GI Sbjct: 173 RQIAAELGLRTAEKPESQDLCLAEVHGSMRAFLDRYIE--SREGEIVDQSGRVLGKHTGI 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQR+GLG+A EPL+V+ +D +RV+VG R S + +NW+ Sbjct: 231 HHYTIGQRKGLGIAHSEPLYVIAIDPIQNRVVVGDRHSAAQSECTVSRVNWVSIA----Q 286 Query: 320 VVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + V++R PVP V D + F + + GQA V+Y D R+L Sbjct: 287 PDAPIQAAVQVRYRSAPVPCTVIPLAGDRARILFADPQFSITPGQAAVWYDGD----RLL 342 Query: 379 GGGIISGSKRS 389 GGG+I +R+ Sbjct: 343 GGGLIDRVERT 353 >gi|223986197|ref|ZP_03636216.1| hypothetical protein HOLDEFILI_03526 [Holdemania filiformis DSM 12042] gi|223961834|gb|EEF66327.1| hypothetical protein HOLDEFILI_03526 [Holdemania filiformis DSM 12042] Length = 381 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 122/377 (32%), Positives = 184/377 (48%), Gaps = 28/377 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73 M+++V +SGGVDS+V A LLK+ G DV ++ ++S + G+ C +D Sbjct: 2 MKILVGLSGGVDSAVAAYLLKQQGLDVTCAFMRNWDSMANNDFLGNPNADDDVCPQEKDW 61 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ V D++ + D+ + + + V F Y G TP P + CN+ +KFS L Sbjct: 62 MDAKSVADSLGLELLRVDFVKEYWDNVFSNFLQEYKKGRTPNPDILCNKYIKFSSFLDFA 121 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 R+ G D LATGHY R R G + + DL +DQSYFL L FPLG Sbjct: 122 RRRGFDTLATGHYARVRHEADFSG-----LYKAHDLNKDQSYFLCQVASDALRHTLFPLG 176 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252 +++K VR +A+E+ L IA+K DS ICF+ + + + +K A G IV + + ++ Sbjct: 177 EIEKPEVRRIAKELRLSIAEKKDSTGICFIGERNFREFLKNYLP--AKSGKIVDVISRRV 234 Query: 253 LGRHNGIINYTIGQRR-GLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308 LG H G++ YTIGQR+ G P FVV D + ++V + L + + Sbjct: 235 LGDHEGVLYYTIGQRKGLGIGGEGGPWFVVGKDVVHNELLVASGESNDWLLSDTCLVSGV 294 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVF 367 NWL C K R Q PV ++ D+ V + + + V GQ VF Sbjct: 295 NWLA----RTKPQGALSCCAKFRYRQKDNPVTLEFLDETTVRLTYPQQVASVTPGQQAVF 350 Query: 368 YTSDSNEARVLGGGIIS 384 Y + + LGGG+I Sbjct: 351 YLGE----QCLGGGVIE 363 >gi|120436568|ref|YP_862254.1| tRNA methyl transferase [Gramella forsetii KT0803] gi|205816859|sp|A0M3J2|MNMA_GRAFK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|117578718|emb|CAL67187.1| tRNA methyl transferase [Gramella forsetii KT0803] Length = 395 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 119/403 (29%), Positives = 194/403 (48%), Gaps = 48/403 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VVV +SGGVDSSV A LLK GY+VIG+ ++ ++ + C D DA V Sbjct: 2 KKVVVGLSGGVDSSVSAYLLKEQGYEVIGLFMKNWHDDSVT-ISDECPWLDDSNDAMMVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + D E+++ ++ + Y G TP P V CNR +KF + + LGAD Sbjct: 61 DKLGIPFQTVDLSEQYKERIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMKIALSLGADY 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + DG+ + D +DQSYFL TQ+QL FP+G+++K V Sbjct: 121 VATGHYCRKAEFEK-DGEPIYQLLSGEDNNKDQSYFLCQLTQEQLSKTLFPIGELQKSEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248 R +A E L A+K DSQ +CF+ + + D +++ + EG IV + Sbjct: 180 RKIAAEQNLVTAEKKDSQGLCFIGKVRLPDFLQQKLK--SKEGVIVEVPAGNDSYLEEDI 237 Query: 249 ---------------------NGQILGRHNGIINYTIGQRRGL-GVAMGEPLFVVYLDKN 286 +G+++G+H G +T GQR+GL EPLFV+ D Sbjct: 238 NFKSKIDQLQHLSKKFNYQLTDGKVVGKHQGAHYFTKGQRKGLAVGGTPEPLFVIDTDVI 297 Query: 287 SSRVIVGP---RESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341 + + G + +++ E++W+ L D+ + + +IR Q + Sbjct: 298 ENVIYTGQGKDHPGIYRQGLFIAQDEVHWVRRDLAIDS-DEELRIKARIRYRQPLQDATL 356 Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + ++G+YV F++ + + GQ +Y + +LG G+IS Sbjct: 357 HQTENGMYVIFDQPQASITEGQFVAWYQN----GELLGSGVIS 395 >gi|296272288|ref|YP_003654919.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Arcobacter nitrofigilis DSM 7299] gi|296096463|gb|ADG92413.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Arcobacter nitrofigilis DSM 7299] Length = 376 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 131/382 (34%), Positives = 192/382 (50%), Gaps = 32/382 (8%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 +VVV MSGGVDSSV A LLK+ GYDVIG+ ++ + C + DA Sbjct: 9 PAGKKKVVVGMSGGVDSSVTALLLKQQGYDVIGLFMRNWEYGIKGS---QCPNRIEFEDA 65 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 ++V + I + D+ E +R V F G TP P + CNR +KF+ L+ +++ Sbjct: 66 KKVGELIGIEVLGKDFVEEYRTKVFDVFLEGLKKGLTPNPDILCNREIKFNVFLNEAKKM 125 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GADV+ATGHY + Y K ++ P D +DQSYFL A + +QL FPLGD+ Sbjct: 126 GADVIATGHYAKIAKY-----KDHYVLDTPKDSSKDQSYFLHALSSEQLSHAMFPLGDLT 180 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ VR++AR L ++DK DS ICF+ ++ + + + A+ GDIV NG++LGRH Sbjct: 181 KKEVREIARLHNLPVSDKKDSTGICFIGNQRFDEFITQHLK--AIPGDIVDENGKVLGRH 238 Query: 257 NGIINYTIGQRRGLGVAM----------GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 G+I YT+GQR+G+G+ P + + + + V L + Sbjct: 239 KGLICYTLGQRKGIGLGGIKETETANHIHNPWYAAKKNMEDNTLTVVQDTNHPLLMNQSV 298 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASG 362 ++W+ E+A G K +IR Q V + D V V F+K + V G Sbjct: 299 EASHMHWV----LEEAPKVGDKLMAQIRYRQQKQACTVTEVTGDKVLVQFDKPQRAVTLG 354 Query: 363 QACVFYTSDSNEARVLGGGIIS 384 Q+ V Y D LGGG IS Sbjct: 355 QSLVLYEGD----YCLGGGFIS 372 >gi|166154498|ref|YP_001654616.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydia trachomatis 434/Bu] gi|166155373|ref|YP_001653628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335758|ref|ZP_07224002.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis L2tet1] gi|205813555|sp|B0B7K3|MNMA_CHLT2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205813565|sp|B0BBR8|MNMA_CHLTB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|165930486|emb|CAP03979.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydia trachomatis 434/Bu] gi|165931361|emb|CAP06933.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 358 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 130/371 (35%), Positives = 187/371 (50%), Gaps = 29/371 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 V+VAMSGGVDSSVVA LLK+ G Y+V+G+ ++ + + + G C A +D D R+ Sbjct: 3 KTVIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN---GECTATKDFRDVERI 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + +++ +Y + + ++ V F YA G TP P V CNR +KF L +L D Sbjct: 60 AEQLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVLELKGD 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 LATGHY R G DG + R +D +DQSYFL T + L ++ FPLG M K Sbjct: 120 FLATGHYCR----GGADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTE 172 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258 VR +A+E GL A K DS ICF+ + + +++ A GDI+ + Q++GRH G Sbjct: 173 VRRIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADS--PGDIIDFDTQQVVGRHEG 230 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDG 314 YTIGQRRGL + M +P +V+ + + V + L + +E+NW Sbjct: 231 AHYYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYRQELLAKELNWFV-- 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + + C K+R V +DG V V F+ V GQ FY D Sbjct: 289 ----PLQEPMICSAKVRYRSPDEKCSVYPLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI- 343 Query: 374 EARVLGGGIIS 384 LGGG+I Sbjct: 344 ---CLGGGVIE 351 >gi|15835177|ref|NP_296936.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydia muridarum Nigg] gi|7190601|gb|AAF39399.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydia muridarum Nigg] Length = 373 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 131/371 (35%), Positives = 184/371 (49%), Gaps = 29/371 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 V+VAMSGGVDSSVVA LLK+ G YDVIG+ ++ + + + G C A +D D ++ Sbjct: 18 KTVIVAMSGGVDSSVVAYLLKKQGKYDVIGLFMKNWEEQDEN---GECTATKDFLDVEQI 74 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + +++ +Y + + ++ V F Y G TP P V CNR +KF L R+L D Sbjct: 75 AEQLSIPYYTVSFAKEYKERVFSRFLKEYTNGYTPNPDVLCNREIKFDLLQKKVRELKGD 134 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 LATGHY R G DG + R +D +DQSYFL T ++ L ++ FPLG M K Sbjct: 135 FLATGHYCR----GGLDGTG---LFRGVDPNKDQSYFLCGTPKEALSNVLFPLGGMYKTE 187 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258 VR LA E GL A K DS ICF+ + + +++ GDIV + +++G H G Sbjct: 188 VRQLAIEAGLATATKKDSTGICFIGKRPFKSFLEQFVPNS--PGDIVDFDTQKVVGCHEG 245 Query: 259 IINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDG 314 YTIGQRRGL M +P +V+ D + V + L + +E+NW Sbjct: 246 AHYYTIGQRRGLNVGGMEKPCYVLGKDMQKNVVYIVRGEDHPLLYRKELIAKELNWFV-- 303 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + C K+R V +DG V V F+ V GQ FY D Sbjct: 304 ----PLQGSITCSAKVRYRSPDEKCSVYPLEDGTVQVVFDIPVKAVTPGQTVAFYQGDV- 358 Query: 374 EARVLGGGIIS 384 LGGG+I+ Sbjct: 359 ---CLGGGVIA 366 >gi|197119634|ref|YP_002140061.1| tRNA-specific 2-thiouridylase MnmA [Geobacter bemidjiensis Bem] gi|197088994|gb|ACH40265.1| tRNA (5-carboxymethylaminomethyl-2-thio-U34)-thioltransferase [Geobacter bemidjiensis Bem] Length = 355 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 154/375 (41%), Positives = 210/375 (56%), Gaps = 25/375 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQD 72 + N K +V VAMSGGVDSS VAALLK G +VIG+ ++L+ + + KG Sbjct: 1 MSGNFKGKKVAVAMSGGVDSSTVAALLKEQGAEVIGINMKLFARDGEDPQAKG------- 53 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DA+ V + + + ++ EE+F ++ F + Y GETP PCV CNR VKF LL Sbjct: 54 --DAQIVAEYLGIEFHLVHLEEQFSRLIMEDFRAQYLGGETPNPCVRCNRYVKFGLLLDK 111 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 +LGA+ LATGHY+R+ D + + L +DQSYFL+ TQ+QL + FPL Sbjct: 112 ALELGAEYLATGHYVRTSR----DDGGSYHLLKAAFLAKDQSYFLYTLTQKQLSHVVFPL 167 Query: 193 GDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 GDM K+ VR LA + GL +A KSDSQ+ICFV Y +++ GDIVH++G Sbjct: 168 GDMPSKDEVRRLAEKFGLPVAQKSDSQEICFVPGDDYVAFLEKGGRVAGKSGDIVHVDGT 227 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 +LGRH G YTIGQRRGLGVA EPL+VV +D RV+VG L + ++NW+ Sbjct: 228 VLGRHGGTHRYTIGQRRGLGVAWKEPLYVVSIDALQGRVVVGEAGQLFASGLVACDLNWV 287 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTS 370 + F+ KIR Q P+ V+ +G+ V F + + V GQ+ VFY Sbjct: 288 VPVE-----GETFETTCKIRYRQQPIACRVKLLGEGLGEVYFAEPQKSVTPGQSVVFYRE 342 Query: 371 DSNEARVLGGGIISG 385 D +LGGG I G Sbjct: 343 D----ELLGGGRIVG 353 >gi|253682565|ref|ZP_04863362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum D str. 1873] gi|253562277|gb|EES91729.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum D str. 1873] Length = 346 Score = 432 bits (1111), Expect = e-119, Method: Composition-based stats. Identities = 121/366 (33%), Positives = 196/366 (53%), Gaps = 28/366 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V + +SGGVDSSV A LLK GYD+IG+T+++ + + DA ++ Sbjct: 3 KKVAIGLSGGVDSSVAAYLLKEKGYDLIGITMKVSDVDVS-------------EDAAKIA 49 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +++ +++ D + F+N VI FA Y G TP PC CN+ +KF LL ++LGAD Sbjct: 50 QKLDIPYHILDLRDEFKNHVIDNFAKEYLQGRTPNPCAMCNKYIKFGVLLQKAKELGADY 109 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R ++ R ++ D ++DQ+Y ++ TQ L + P G+ K + Sbjct: 110 IATGHYARV-----EEHNGRYLVLNAKDDKKDQTYMFYSLTQDVLKHILMPCGEYTKVQI 164 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN-AGIALEGDIVHLNGQILGRHNGI 259 R++AR + L++ DK +S DICF+ + ++ + G+ V G ILG+H G+ Sbjct: 165 REIARNLDLEVHDKKESMDICFIPDNDHGKYIQSLECKDRIKPGNFVDKQGNILGKHKGL 224 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 I YTIGQR+GLG+++G+P FVV + + V+VG + + ++IN++ D+ Sbjct: 225 IYYTIGQRKGLGLSLGKPGFVVDIIPERNEVVVGDESEIFNSGLIAKDINFI----PFDS 280 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + + KIR S + ++G V V FE + + GQ VFY D +L Sbjct: 281 LENPMEVEAKIRYSTTKSKATIIPFEEGKVKVVFEDKQRAITKGQRVVFYIQD----MLL 336 Query: 379 GGGIIS 384 GGG I Sbjct: 337 GGGTIE 342 >gi|319954152|ref|YP_004165419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cellulophaga algicola DSM 14237] gi|319422812|gb|ADV49921.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cellulophaga algicola DSM 14237] Length = 396 Score = 431 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 117/403 (29%), Positives = 190/403 (47%), Gaps = 47/403 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VVV +SGGVDSSV A LLK GY+VIG+ ++ ++ + C +D DA V Sbjct: 2 KKVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDTVT-ISDECPWLEDSNDAMIVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + D ++ ++ YA G TP P V CNR +KF + + QLGAD Sbjct: 61 EKLGIPFQTVDLSAEYKERIVDYMFDEYAKGRTPNPDVLCNREIKFDVFMKIALQLGADY 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + + DG + D +DQSYFL +Q+QL FP+G++ K V Sbjct: 121 VATGHYCKKGIIKNSDGSETYQLLAGEDPNKDQSYFLCQLSQEQLAKTLFPVGELLKPEV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248 R +A L ADK DSQ +CF+ + + D +++ +G I+ + Sbjct: 181 RRIAAANELITADKKDSQGLCFIGKVRLPDFLQQKLK--PKKGVIIEVPSTIAHFQEAPT 238 Query: 249 ---------------------NGQILGRHNGIINYTIGQRRGL-GVAMGEPLFVVYLDKN 286 +G+++G H G +T GQR+GL EPLFV+ D + Sbjct: 239 EFLNKNEELAYFAKKPIYHLTDGKVVGNHQGAHYFTKGQRKGLDVGGTKEPLFVIETDVD 298 Query: 287 SSRVIVGP---RESLEVHRIYLRE--INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341 + + G L +++ + ++W+ L + D + +IR Q+ + Sbjct: 299 ENIIYTGQGKAHPGLYRRTLFVSDAELHWVRTDLAL-KMDDSLQVLARIRYRQELQKATL 357 Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + + G+YVDFE+ + + GQ +Y D ++G G+IS Sbjct: 358 YKVEGGMYVDFEEKQSAITEGQFVAWYLKDD----LIGSGVIS 396 >gi|205829096|sp|B1XM11|MNMA_SYNP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 353 Score = 431 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 148/366 (40%), Positives = 203/366 (55%), Gaps = 23/366 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V V +SGGVDSSV A +L R GY V GVTL L K KG CC+ V DA +C+ Sbjct: 3 KVAVGLSGGVDSSVTAGILHRQGYTVEGVTLWLM------KGKGQCCSEGMV-DAADICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140 + + H++ D + F+ ++ S Y G TPLPC CNR VKF +L + +LG D Sbjct: 56 QLGIPHHIVDSRDLFQKYIVDYVVSGYEVGVTPLPCSQCNRMVKFGPMLQWAKAELGIDQ 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R +D R + R +D +DQSYFL+ TQ+ L FPLG+M K Sbjct: 116 IATGHYARIRY---NDQTGRYELLRAVDRHKDQSYFLYDLTQEMLAGTLFPLGEMTKGET 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R +A EM L A K +SQD+C ++ G + + EG+IV L+G++LG H GI Sbjct: 173 RQIAAEMQLSTAKKPESQDLCLIEAHGSMKTFLDKYIEQ--REGEIVDLDGKVLGHHTGI 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQR+GLG+A EPL+VV LD +RV+V R+ ++ +NWL Sbjct: 231 HHYTIGQRKGLGIAAPEPLYVVKLDNVMNRVVVSTRDRAGQSECTVQRMNWLAL----PG 286 Query: 320 VVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + V++R VPV V D + + FE+ + G+ GQA V Y D RVL Sbjct: 287 ITSPIRAEVQVRYRSGAVPVTVIPLEGDRLKLVFEEPQFGITPGQAAVLYDGD----RVL 342 Query: 379 GGGIIS 384 GGGII Sbjct: 343 GGGIIE 348 >gi|312129941|ref|YP_003997281.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Leadbetterella byssophila DSM 17132] gi|311906487|gb|ADQ16928.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Leadbetterella byssophila DSM 17132] Length = 368 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 136/377 (36%), Positives = 208/377 (55%), Gaps = 19/377 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76 K RV+VAMSGG+DSS+ A LL GY+V+G+T++ ++ S +K++ CC+ + DA Sbjct: 3 KRGRVLVAMSGGIDSSLAAVLLHEQGYEVVGMTMKTWDYASSGGTKKETGCCSLDSINDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + + HY+ D F ++VI F Y G TP PCV CN +K+ LL L Sbjct: 63 RAIAVNLGFPHYILDIRSEFGDSVIDHFTGEYLEGRTPNPCVLCNTHIKWDALLRRADNL 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 + +ATGHY + R G R ++ R D +DQSY L+ +Q+ L PLGD+ Sbjct: 123 NCEFIATGHYAKIRQENG-----RYVISRGKDTTKDQSYVLWGVSQESLSRTLLPLGDLT 177 Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252 K +R++AR+ G D+ +KS+S +ICFV Y +KR G+ + G+ V NGQ+ Sbjct: 178 KAEIREMARQKGFYDLVNKSESYEICFVPDNDYRGFLKRRIEGLEEQVAGGNFVLENGQV 237 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G+H G YTIGQR+GL +A+G P+FV + K ++ V++G E L+ + + + ++N Sbjct: 238 VGKHEGYPFYTIGQRKGLKIALGYPVFVTEIRKETNEVVLGTEEYLKKNGMVVSKLNL-- 295 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSD 371 + G + KIR F+++ D D + V+F + +A GQA VFY D Sbjct: 296 -QKYASIPEGGLESLTKIRYKDQGEMAFIRQTDADKIEVEFSQPVSAIAPGQAAVFYEGD 354 Query: 372 SNEARVLGGGIISGSKR 388 V+GGG I S R Sbjct: 355 D----VIGGGWIMKSYR 367 >gi|270285349|ref|ZP_06194743.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia muridarum Nigg] gi|270289365|ref|ZP_06195667.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia muridarum Weiss] gi|301336746|ref|ZP_07224948.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia muridarum MopnTet14] gi|14195289|sp|Q9PKA7|MNMA_CHLMU RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 358 Score = 431 bits (1109), Expect = e-118, Method: Composition-based stats. Identities = 131/371 (35%), Positives = 184/371 (49%), Gaps = 29/371 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 V+VAMSGGVDSSVVA LLK+ G YDVIG+ ++ + + + G C A +D D ++ Sbjct: 3 KTVIVAMSGGVDSSVVAYLLKKQGKYDVIGLFMKNWEEQDEN---GECTATKDFLDVEQI 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + +++ +Y + + ++ V F Y G TP P V CNR +KF L R+L D Sbjct: 60 AEQLSIPYYTVSFAKEYKERVFSRFLKEYTNGYTPNPDVLCNREIKFDLLQKKVRELKGD 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 LATGHY R G DG + R +D +DQSYFL T ++ L ++ FPLG M K Sbjct: 120 FLATGHYCR----GGLDGTG---LFRGVDPNKDQSYFLCGTPKEALSNVLFPLGGMYKTE 172 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258 VR LA E GL A K DS ICF+ + + +++ GDIV + +++G H G Sbjct: 173 VRQLAIEAGLATATKKDSTGICFIGKRPFKSFLEQFVPNS--PGDIVDFDTQKVVGCHEG 230 Query: 259 IINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDG 314 YTIGQRRGL M +P +V+ D + V + L + +E+NW Sbjct: 231 AHYYTIGQRRGLNVGGMEKPCYVLGKDMQKNVVYIVRGEDHPLLYRKELIAKELNWFV-- 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + C K+R V +DG V V F+ V GQ FY D Sbjct: 289 ----PLQGSITCSAKVRYRSPDEKCSVYPLEDGTVQVVFDIPVKAVTPGQTVAFYQGDV- 343 Query: 374 EARVLGGGIIS 384 LGGG+I+ Sbjct: 344 ---CLGGGVIA 351 >gi|76789009|ref|YP_328095.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydia trachomatis A/HAR-13] gi|123606993|sp|Q3KM75|MNMA_CHLTA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|76167539|gb|AAX50547.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydia trachomatis A/HAR-13] Length = 358 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 130/371 (35%), Positives = 188/371 (50%), Gaps = 29/371 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 V+VAMSGGVDSSVVA LLK+ G Y+V+G+ ++ + + + G C A +D D R+ Sbjct: 3 KTVIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN---GECTATKDFRDVERI 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + +++ +Y + + ++ V F YA G TP P V CNR +KF L R+L D Sbjct: 60 AEQLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGD 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 LATGHY R G DG + R +D +DQSYFL T + L ++ FPLG + K Sbjct: 120 FLATGHYCR----GGADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGVYKTE 172 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258 VR +A+E GL A K DS ICF+ + + +++ A GDI+ + Q++GRH G Sbjct: 173 VRRIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADS--PGDIIDFDTQQVVGRHEG 230 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDG 314 YTIGQRRGL + M +P +V+ + + V + L + +E+NW Sbjct: 231 AHYYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYRQELLAKELNWFV-- 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + + C K+R V +DG V V F+ V GQ FY D Sbjct: 289 ----PLQEPMICSAKVRYRSPDEKCSVYPLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI- 343 Query: 374 EARVLGGGIIS 384 LGGG+I Sbjct: 344 ---CLGGGVIE 351 >gi|296435803|gb|ADH17977.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis G/9768] gi|296437663|gb|ADH19824.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis G/11074] gi|297140162|gb|ADH96920.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis G/9301] Length = 358 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 131/371 (35%), Positives = 188/371 (50%), Gaps = 29/371 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 V+VAMSGGVDSSVVA LLK+ G Y+V+G+ ++ + + + G C A +D D R+ Sbjct: 3 KTVIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN---GECTATKDFRDVERI 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + +++ +Y + + ++ V F YA G TP P V CNR +KF L R+L D Sbjct: 60 AEQLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGD 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 LATGHY R G DG + R +D +DQSYFL T + L ++ FPLG M K Sbjct: 120 FLATGHYCR----GGADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTE 172 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258 VR +A+E GL A K DS ICF+ + + +++ A GDI+ + Q++GRH G Sbjct: 173 VRRIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADS--PGDIIDFDTQQVVGRHEG 230 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDG 314 YTIGQRRGL + M +P +V+ + + V + L + +E+NW Sbjct: 231 AHYYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYRQELLAKELNWFV-- 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + + C K+R V +DG V V F+ V GQ FY D Sbjct: 289 ----PLQEPMICSAKVRYRSPNEKCSVYPLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI- 343 Query: 374 EARVLGGGIIS 384 LGGG+I Sbjct: 344 ---CLGGGVIE 351 >gi|328950099|ref|YP_004367434.1| tRNA-specific 2-thiouridylase mnmA [Marinithermus hydrothermalis DSM 14884] gi|328450423|gb|AEB11324.1| tRNA-specific 2-thiouridylase mnmA [Marinithermus hydrothermalis DSM 14884] Length = 374 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 143/368 (38%), Positives = 199/368 (54%), Gaps = 20/368 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + RV+ AMSGGVDSSV AALLK GY+VIG ++ + K +CC+ Y+ARR Sbjct: 5 RKGRVLAAMSGGVDSSVTAALLKEQGYEVIGAMMRFWPDNKPEDCFNTCCSPDAAYEARR 64 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D I + Y+ DY E F +I PF Y GETP+PCV CN VKF LL R LG Sbjct: 65 VADQIGIPFYLLDYREVFEVEIIQPFLEGYRRGETPIPCVWCNTRVKFDALLKKARMLGC 124 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY+R +G + R D +DQ+YFL+ T ++ + + FP+G M+K Sbjct: 125 DYVATGHYVRRV-----EGPQGIEFHRGGDPRKDQTYFLWGTPREAMPHILFPVGHMQKP 179 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR LA GL A K +SQ+ICFV G ++ G G ++ L G+++G H Sbjct: 180 EVRRLAERFGLITAKKPESQNICFVP-GSVRAFLEEHLGG--QPGPVIDLETGEVIGEHA 236 Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G YT+GQR+GLG+ +VV + ++ VIVGPRE+ + + REIN L Sbjct: 237 GAQFYTVGQRKGLGLWKTHLERYVVEVRPQTNEVIVGPREACQWRGLEAREIN-----LL 291 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYV-DFEKSEVGVASGQACVFYTSDSNEA 375 D ++R Q P V+ G +V +F++ + V GQ+ V Y D Sbjct: 292 LDPETLPEVVTAQVRYRQRPARARVRELGAGRFVLEFDEPQFAVTRGQSVVLYDGD---- 347 Query: 376 RVLGGGII 383 R+LGGG+I Sbjct: 348 RLLGGGVI 355 >gi|325285134|ref|YP_004260924.1| tRNA-specific 2-thiouridylase mnmA [Cellulophaga lytica DSM 7489] gi|324320588|gb|ADY28053.1| tRNA-specific 2-thiouridylase mnmA [Cellulophaga lytica DSM 7489] Length = 396 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 119/403 (29%), Positives = 194/403 (48%), Gaps = 47/403 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VVV +SGGVDSSV A LLK GYDVIG+ ++ ++ + C +D DA V Sbjct: 2 KKVVVGLSGGVDSSVTAYLLKEQGYDVIGLFMKNWHDDSVT-ISNECPWLEDSNDALIVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + D ++ ++ + Y G TP P V CNR +KF + + QLGAD Sbjct: 61 EKLGIPFQTVDLSAEYKERIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMKIAMQLGADY 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R ++ ++GK + D +DQSYFL +Q+QL FP+GD+ K V Sbjct: 121 VATGHYCRKTSFINEEGKEIHQLLAGKDGNKDQSYFLCQLSQEQLSKTLFPIGDLLKPEV 180 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248 R +A + L ADK DSQ +CF+ + + D +++ +G IV + Sbjct: 181 RKIAADNDLITADKKDSQGLCFIGKVRLPDFLQQKLK--PKQGVIVEVSSSLEQYNNAIP 238 Query: 249 ---------------------NGQILGRHNGIINYTIGQRRGL-GVAMGEPLFVVYLDKN 286 +G+++G H G +T GQR+GL EPLFV+ D + Sbjct: 239 EFATKEDELAFYATKPVYNLNDGKVVGEHQGAHYFTKGQRKGLAVGGTKEPLFVIETDVD 298 Query: 287 SSRVIVGP---RESLEVHRIYLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341 + + G L +++ E++W+ + + V + + +IR Q + Sbjct: 299 ENVIYTGQGKKHPGLYRKTLFVSNEELHWVRTDMALE-VDETMEVMARIRYRQALQKATL 357 Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + D G+YVDF++ + + GQ ++ D ++G G+IS Sbjct: 358 YKVDTGLYVDFKEEQSAMTEGQFVAWHIGD----ELIGSGVIS 396 >gi|254230168|ref|ZP_04923562.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio sp. Ex25] gi|151937306|gb|EDN56170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Vibrio sp. Ex25] Length = 341 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 108/348 (31%), Positives = 175/348 (50%), Gaps = 28/348 (8%) Query: 49 GVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSY 108 G+ ++ + + C A +D+ DA+ VCD + + + ++ + + V F + Y Sbjct: 2 GLFMKNWEEDDNEE---YCTAAEDLADAQAVCDKLGIHLHTINFAAEYWDNVFEYFLAEY 58 Query: 109 AAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPM 167 AG TP P + CN+ +KF L + L AD +A GHY+R D + M R + Sbjct: 59 KAGRTPNPDILCNKEIKFKAFLEFADEVLDADYIAMGHYVRRSF---PDNGEKPAMLRGL 115 Query: 168 DLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGK 227 D +DQSYFL+ + +Q+ FP+GD++K VR +A E GL A K DS ICF+ + K Sbjct: 116 DGNKDQSYFLYTLSHEQIGRSLFPVGDLEKPEVRRIAEEQGLVTAKKKDSTGICFIGERK 175 Query: 228 YFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-------GEPLFV 280 + D + R A G+I G+++G+H G++ +T+GQR+GL + EP FV Sbjct: 176 FTDFLGRYLP--AQPGNIETPEGEVIGQHQGLMYHTLGQRKGLHIGGRKGGGGNEEPWFV 233 Query: 281 VYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPV 337 D + +I L+ + +++W+ + + D KC VK R Q+ + Sbjct: 234 GEKDLERNVLIAVQGKDHPMLKSEGLLASQLHWVD----REPIRDVMKCTVKTRYRQEDI 289 Query: 338 PVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 P + DD + V F++ ++ V GQ+ VFY D LGGGII Sbjct: 290 PCTIIPIDDENIKVIFDEPQIAVTPGQSAVFYKDDV----CLGGGIIE 333 >gi|119512160|ref|ZP_01631251.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nodularia spumigena CCY9414] gi|119463191|gb|EAW44137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nodularia spumigena CCY9414] Length = 351 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 141/367 (38%), Positives = 208/367 (56%), Gaps = 23/367 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VVV +SGGVDSS AA+L GY+VIG+TL L K KG CC+ + DA +C Sbjct: 2 KKVVVGLSGGVDSSTAAAILHHQGYEVIGLTLWLM------KGKGQCCSEGMI-DAADIC 54 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139 + + V H V D E F+ ++ + Y+AG TPLPC CN+TVKF ++ R+ L D Sbjct: 55 EQLGVPHEVVDIREVFQTQIVDFLVTGYSAGITPLPCSQCNKTVKFGPMVQYAREKLDCD 114 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + D+ R + R +D +DQSYFL+ +Q+ L FPLG + K Sbjct: 115 RIATGHYAQINY---DEATGRYQLLRAVDRNKDQSYFLYDLSQELLKATVFPLGKLDKAD 171 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R +A E GL A+K +SQD+C V+ G + + A GDIV + G++LG+H+G Sbjct: 172 TRRIAAEYGLTTANKPESQDLCLVESNGSMRAFLDKYLA--PKPGDIVDVAGKVLGQHDG 229 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 + +YTIGQR+GLG+A EPL+V+ LD +++V+VG R + ++NW+ Sbjct: 230 VHHYTIGQRKGLGIAAAEPLYVIELDAVNNKVVVGDRTKGTQPECTVNQVNWVSMAEPST 289 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + V+IR P PV V ++ V + F++ + + GQA V+Y D +V Sbjct: 290 PI----RAEVQIRYRSSPTPVTVIPLENSRVRLVFDEPQFSITPGQAAVWYDGD----KV 341 Query: 378 LGGGIIS 384 LGGGII Sbjct: 342 LGGGIIE 348 >gi|169338047|ref|ZP_02621467.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum C str. Eklund] gi|169295231|gb|EDS77364.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium botulinum C str. Eklund] Length = 350 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 118/367 (32%), Positives = 201/367 (54%), Gaps = 27/367 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V V +SGGVDSSV A LLK GYD+IG+T+++ + S DA++V Sbjct: 6 KKVAVGLSGGVDSSVAAYLLKEKGYDLIGITMKVSSDLDVS------------EDAKKVA 53 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + +++ +YV D E F+ VI FA Y G TP PC CN+ +KF +L ++LGAD Sbjct: 54 EKLDIPYYVIDLTEEFKKRVINSFAEEYLQGRTPNPCAVCNKYIKFGAMLEKAKELGADY 113 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R ++ R ++ D ++DQ+Y ++ TQ L + P G+ K + Sbjct: 114 IATGHYARI-----EEHNGRILVLNAKDDKKDQTYMFYSLTQDVLKHVLMPCGEYTKVQI 168 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN-AGIALEGDIVHLNGQILGRHNGI 259 R++A+ +G+++ +K +S DICF+ + ++++ G+ V NG +LG+H G+ Sbjct: 169 REIAKNIGIEVHNKKESMDICFIPDNDHGKYIQQLECKDRIKPGNFVDENGNVLGKHKGL 228 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 I YTIGQR+GLG+++G+P FV+ + + V++G E + + + +++N++ D+ Sbjct: 229 IYYTIGQRKGLGLSLGKPGFVIDIIPERNEVVIGDEEEIFNNGLIAKDVNFI----PFDS 284 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + + KIR S + D+G + F+ + + GQ VFY D ++ Sbjct: 285 LENTMEVEAKIRYSTTKSKATIIPYDNGKIKAMFKDKQRAITKGQRVVFYIED----MLV 340 Query: 379 GGGIISG 385 GGG I Sbjct: 341 GGGTIES 347 >gi|47093434|ref|ZP_00231199.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes str. 4b H7858] gi|47018213|gb|EAL08981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Listeria monocytogenes str. 4b H7858] Length = 333 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 112/350 (32%), Positives = 173/350 (49%), Gaps = 23/350 (6%) Query: 52 LQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAG 111 ++ ++ + G C A +D D RV + I + +Y ++E+ + + V F Y G Sbjct: 1 MKNWDD---TDEFGVCTATEDYDDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLG 57 Query: 112 ETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER 171 TP P V CN+ +KF L LGAD +ATGHY + + + + R +D + Sbjct: 58 RTPNPDVMCNKEIKFKAFLEHAESLGADYVATGHYAQVKKVGDE-----IELLRGVDNNK 112 Query: 172 DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDV 231 DQ+YFL +Q QL + FPLG M+K VR++A++ GL A+K DS ICF+ + + Sbjct: 113 DQTYFLNQLSQDQLKKVMFPLGGMEKTEVREIAKKAGLATANKKDSTGICFIGERNFKQF 172 Query: 232 VKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRV 290 + A G++ LNG++LG+H+G++ YTIGQR GLG+ GEP FVV D + + Sbjct: 173 LSEYLP--AQPGEMRTLNGEVLGKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVL 230 Query: 291 IV---GPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG 347 V E+L + +I++ + + +C K R Q V V +DG Sbjct: 231 FVEQGFHHETLYSDSLIATDISFTTNAEKPKTI----ECTAKFRYRQTDTKVTVHLREDG 286 Query: 348 -VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396 V F + GQA VFY D LGGG I ++ A + + Sbjct: 287 TAEVVFADPVRAITPGQAVVFYDGDI----CLGGGTIDTVWKNGAKLDYV 332 >gi|297616542|ref|YP_003701701.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Syntrophothermus lipocalidus DSM 12680] gi|297144379|gb|ADI01136.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Syntrophothermus lipocalidus DSM 12680] Length = 340 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 127/363 (34%), Positives = 190/363 (52%), Gaps = 26/363 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV V MSGGVDS V A LLK GYDVIG+T+ ++ + A V Sbjct: 4 RVAVLMSGGVDSGVAALLLKEQGYDVIGLTMLNWS-------------AEVCQKAAEVAR 50 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + +SH+V D F+ VI F +Y G TP PCV CN VKF +L +G + Sbjct: 51 FLGISHHVVDLRAEFKRQVIDYFCRTYEEGLTPNPCVVCNEFVKFGLMLEQAWDVGCRWV 110 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R L D+ R ++ + +D ++DQSYFL+ Q QLC L FPLG+M K+ + Sbjct: 111 ATGHYARVEL---DETTGRHLLKKGVDPKKDQSYFLYRLKQNQLCRLLFPLGNMTKQETK 167 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A + GL +A +SQ++CF++ G Y + + G I G +LG H G+I+ Sbjct: 168 SIAAKYGLPVAKAEESQEVCFIE-GDYRQFLAA-KGVKGVPGPIRDQEGNVLGTHQGLIS 225 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YT+GQRRGLG+ G P +V+ LD ++ ++VG + L + + N++ +++ Sbjct: 226 YTVGQRRGLGLRAGRPFYVIDLDTRNNTLVVGEEKELYRQELLATDNNFI----PFESLT 281 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + KIR + + G+ V+F + V GQ+ V+Y D V+GGG Sbjct: 282 EPLMVEAKIRYTAPLAQARLTPVSGGIKVEFVHPQRAVTRGQSVVYYQGDV----VVGGG 337 Query: 382 IIS 384 II+ Sbjct: 338 IIA 340 >gi|95930240|ref|ZP_01312978.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfuromonas acetoxidans DSM 684] gi|95133703|gb|EAT15364.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfuromonas acetoxidans DSM 684] Length = 346 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 146/367 (39%), Positives = 202/367 (55%), Gaps = 24/367 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K V+VAMSGGVDSSV AALL GY+VIG ++L ++ + + DARR Sbjct: 2 KKNTVLVAMSGGVDSSVTAALLIDQGYEVIGAHMRLLPGDQSIQGE---------ADARR 52 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + + D + F A+I F Y AG TP PCV CN+ KF L ++ +LGA Sbjct: 53 IAEELEIPFHSLDCRDTFNAAIIGDFCREYRAGRTPNPCVRCNQQFKFGALFALADELGA 112 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY R D K +CR + ++DQSYFLF + QL + FPLG + K Sbjct: 113 DYLATGHYARI-----DRQKDHVRLCRGLYKQKDQSYFLFVLSAAQLKRVLFPLGGLTKP 167 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR+LA + L KS+SQDICFV Y ++R ++ G+IVH+NG++LG H+G Sbjct: 168 EVRNLAEKYHLSSRKKSESQDICFVPDNDYIGFLERYDSPWPDHGEIVHINGKVLGTHHG 227 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 YTIGQRRGLG+ EPL+V+ LD RVIVG + +L+ R+ +R++ W Sbjct: 228 THRYTIGQRRGLGIGWTEPLYVIELDAEQQRVIVGEKAALQRDRLQVRDVTW-----SVP 282 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + +IR P + +G V V F++ + GV GQ VFY D V Sbjct: 283 PQHTSLRVDCRIRYRHHPAMATLSIRPNGDVDVVFDEPQYGVTPGQCAVFYDDDC----V 338 Query: 378 LGGGIIS 384 LGGG I+ Sbjct: 339 LGGGWIT 345 >gi|198282965|ref|YP_002219286.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218666259|ref|YP_002425168.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidithiobacillus ferrooxidans ATCC 23270] gi|259495823|sp|B7J5X6|MNMA_ACIF2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|259495824|sp|B5ENY8|MNMA_ACIF5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|198247486|gb|ACH83079.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidithiobacillus ferrooxidans ATCC 53993] gi|218518472|gb|ACK79058.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidithiobacillus ferrooxidans ATCC 23270] Length = 352 Score = 430 bits (1107), Expect = e-118, Method: Composition-based stats. Identities = 141/370 (38%), Positives = 204/370 (55%), Gaps = 22/370 (5%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D + ++A+SGGVDS+V A L++ GY++ GVT++L+ + CC +D+ DA + Sbjct: 3 DKKALIALSGGVDSAVAALLMQGQGYELTGVTMRLWP-------RSRCCDEKDIEDAAEI 55 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C + + + V DY E FR V+ F + Y AG TP PC CN+ +KF LL+ +LGA Sbjct: 56 CARLGIPYTVLDYREAFRRQVVDVFVAEYQAGRTPNPCARCNQFLKFDALLAEGEKLGAT 115 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +LATGHY R + + R D +DQSYFLFA L LRFP+G M K+ Sbjct: 116 MLATGHYARLA-----ETSSGTALLRGRDHAKDQSYFLFAIGAGILSRLRFPVGGMNKDE 170 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA-GIALEGDIVHLNGQILGRHNG 258 VR +AR+ GL +A K DSQDICFV G Y ++ +A EG++V +GQ+LG H G Sbjct: 171 VRAMARKHGLPVAAKQDSQDICFVPDGDYRRFLEDYAGLDMAQEGEMVDSSGQVLGHHPG 230 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 +++T+GQR+GLG +P +V+ LD +RVIVG + L + L E NWL D Sbjct: 231 TLHFTVGQRKGLGGGSDQPRYVLALDPAQNRVIVGGEDELYRGVVSLAECNWLTDL---- 286 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + VK+R + D + F + + V GQA V Y + R+ Sbjct: 287 SPGETHAVTVKLRYRSRAESAMLHLLSDARAELRFREPQRAVTPGQAAVCYQGE----RL 342 Query: 378 LGGGIISGSK 387 LGGG I G++ Sbjct: 343 LGGGWIQGTE 352 >gi|254416844|ref|ZP_05030593.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Microcoleus chthonoplastes PCC 7420] gi|196176390|gb|EDX71405.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Microcoleus chthonoplastes PCC 7420] Length = 359 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 148/375 (39%), Positives = 210/375 (56%), Gaps = 25/375 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VVV +SGGVDSSV AA L GY+V+G+TL L K KG CC+ V DA +C Sbjct: 7 KKVVVGLSGGVDSSVAAATLHHQGYEVVGLTLWLM------KGKGQCCSEGMV-DAAFIC 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139 + + + H++ D E F+ ++ S Y +G TPLPC CN+TVKF +L+ R+ LG D Sbjct: 60 EQLGIPHHIVDSREVFQANIVDYLVSGYESGITPLPCSQCNKTVKFGPMLAYARETLGID 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R D R + R +D +DQSYFL+ +Q+ L FPLG+++K Sbjct: 120 KIATGHYARIRYDAKSD---RYQLLRAVDSNKDQSYFLYDLSQELLAASIFPLGELEKTQ 176 Query: 200 VRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R LA E L A K +SQD+C V+ G + + + GDIV NG++LG+H G Sbjct: 177 TRQLAAEYQLKTAAKPESQDLCLVESHGSMRTFLDQYISQTT--GDIVDTNGKVLGQHQG 234 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I +YTIGQR+GLG+A EPL+VV +D ++RVIVG R S + +NW+ Sbjct: 235 IHHYTIGQRKGLGIAAPEPLYVVAIDAGANRVIVGDRASATQPDCTVGRVNWISIH---- 290 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + V++R PV V V D + + + F++ + + GQA V Y + + Sbjct: 291 PPTTPIQASVQVRYRSHPVDVTVIPLDGNRMKLIFDQPQFSITPGQAAVLYDGE----ML 346 Query: 378 LGGGIISGSKRSDAV 392 LGGGII + DAV Sbjct: 347 LGGGIIE--RNQDAV 359 >gi|22299799|ref|NP_683046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermosynechococcus elongatus BP-1] gi|30173409|sp|Q8CWM0|MNMA_THEEB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|22295983|dbj|BAC09808.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyltransferase [Thermosynechococcus elongatus BP-1] Length = 369 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 146/365 (40%), Positives = 206/365 (56%), Gaps = 24/365 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV +SGGVDSSV A LK G+ V+G+TL L K KG CC+ + + DA R+C+ Sbjct: 7 VVVGLSGGVDSSVAIASLKAQGHPVVGLTLWLM------KGKGQCCS-EGLVDAARLCEQ 59 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVL 141 + V H++ D E F ++ S YA G TPLPC CNR VKF +L+ +R+ LG D + Sbjct: 60 LGVPHHIVDSREIFEKYIVNYLISGYANGVTPLPCSQCNRLVKFGPMLAYSREQLGIDYI 119 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + + D R + R +D +DQSYFL+ Q+ L + FPLG K R Sbjct: 120 ATGHYAQVKYNPTSD---RYELWRAVDRHKDQSYFLYDLPQEILAHVLFPLGQQTKAETR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 LA + GL A K +SQD+C ++ G + + +G+IV + G++LG H GI Sbjct: 177 ALAAQYGLPTASKPESQDLCLIEAHGSMRQFLDQYLPR--QQGEIVDVYGRVLGYHQGIH 234 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +YTIGQR+GLG+A EPL+VV LD+ +RVIVG R + + +NW+ Sbjct: 235 HYTIGQRKGLGIAAPEPLYVVALDREHNRVIVGDRATAGRRECTVARVNWVSI----PPP 290 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + V+IR PVPV + + + V ++F + + GV GQA V+Y D R+L Sbjct: 291 KEPMTATVQIRYRTPPVPVTIIPDANAEQVQLEFAEPQFGVTPGQAAVWYAGD----RLL 346 Query: 379 GGGII 383 GGGII Sbjct: 347 GGGII 351 >gi|237802710|ref|YP_002887904.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis B/Jali20/OT] gi|231273944|emb|CAX10736.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydia trachomatis B/Jali20/OT] Length = 358 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 131/371 (35%), Positives = 188/371 (50%), Gaps = 29/371 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 V+VAMSGGVDSSVVA LLK+ G Y+V+G+ ++ + + + G C A +D D R+ Sbjct: 3 KTVIVAMSGGVDSSVVAYLLKKQGEYNVVGLFMKNWGEQDEN---GECTATKDFRDVERI 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + +++ +Y + + ++ V F YA G TP P V CNR +KF L R+L D Sbjct: 60 AEQLSIPYYTVSFYKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGD 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 LATGHY R G DG + R +D +DQSYFL T + L ++ FPLG M K Sbjct: 120 FLATGHYCR----GGADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTE 172 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258 VR +A+E GL A K DS ICF+ + + +++ A GDI+ + Q++GRH G Sbjct: 173 VRRIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADS--PGDIIDFDTQQVVGRHEG 230 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDG 314 YTIGQRRGL + M +P +V+ + + V + L + +E+NW Sbjct: 231 AHYYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYRQELLAKELNWFV-- 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + + C K+R V +DG V V F+ V GQ FY D Sbjct: 289 ----PLQEPMICSAKVRYRSPDEKCSVYPLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI- 343 Query: 374 EARVLGGGIIS 384 LGGG+I Sbjct: 344 ---CLGGGVIE 351 >gi|218281120|ref|ZP_03487655.1| hypothetical protein EUBIFOR_00214 [Eubacterium biforme DSM 3989] gi|218217634|gb|EEC91172.1| hypothetical protein EUBIFOR_00214 [Eubacterium biforme DSM 3989] Length = 385 Score = 429 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 120/391 (30%), Positives = 190/391 (48%), Gaps = 29/391 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73 M+V+V +SGGVDS+V A LLK+ GYDV ++ ++S + G+ C QD Sbjct: 1 MKVLVGLSGGVDSAVAAYLLKKQGYDVTCCFMRNWDSFANNDIAGNPTIKDDTCPQEQDY 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA V + +++ D+ E + + V F S Y G TP P + CN+ +KF Sbjct: 61 LDALAVANHLDLPLQRVDFIEEYWDNVFKTFLSEYEKGRTPNPDILCNKYIKFDSFFEYA 120 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + G D +ATGHY + + + R D +DQ+YFL + ++ FPL Sbjct: 121 MKQGFDKVATGHYASNA-----EENGFTYLTRAKDQNKDQTYFLCQVEKSKIAKTIFPLA 175 Query: 194 DMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQ 251 ++K +R +A E+ L+ +A K DS ICF+ + + + + +GDIV +N + Sbjct: 176 HLEKPEIRQIAAELNLESVATKKDSTGICFIGERNFRQFLSNYLP--SKDGDIVDVNTSK 233 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVG---PRESLEVHRIYLRE 307 ++ RH G++ YTIGQR+GL + + P FVV D + + V R+ L ++ Sbjct: 234 VIARHVGVLYYTIGQRKGLNIDHEKGPWFVVGKDVVKNILYVCRTDQRDLLYSDSCIVKG 293 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 INW+ L E KC K R Q + ++R DD V V + ++ V GQ V Sbjct: 294 INWILPSLEEIPT----KCTCKFRYRQKDQDIEIERLDDTSVLVKYPQTIASVTEGQEAV 349 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESLL 397 FY D + +GGG+I + L+ Sbjct: 350 FYDGD----KCIGGGVIEEVFKDGKNLNQLI 376 >gi|126656453|ref|ZP_01727714.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cyanothece sp. CCY0110] gi|126622139|gb|EAZ92846.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cyanothece sp. CCY0110] Length = 349 Score = 429 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 147/368 (39%), Positives = 203/368 (55%), Gaps = 23/368 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VVV +SGGVDSSV AA L+ GY VIG+TL L K KG CC+ V DA +C Sbjct: 2 KKVVVGLSGGVDSSVAAASLQHQGYTVIGLTLWLM------KGKGQCCSEGMV-DAAFIC 54 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139 + + V H++ D E F +I S Y +G TPLPC CNR VKF +L+ R+ L D Sbjct: 55 EQLGVPHHIVDTRELFEANIINYLVSGYESGVTPLPCSQCNRAVKFGPMLAYAREELNCD 114 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R D+ R + R +D +DQSYFL+ +Q L FPLG+ KE Sbjct: 115 RIATGHYARIRY---DEQMDRYQLLRAIDRNKDQSYFLYDLSQDILKGTIFPLGEQTKEE 171 Query: 200 VRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R +A E L A K +SQD+C ++ G + + EG+IV L+G++LG H G Sbjct: 172 TRRIAAEFDLKTASKPESQDLCLIEAHGSMASFLDQYIK--PKEGEIVDLDGKVLGTHQG 229 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I +YTIGQR+GLG+A EPL+VV LD +RVIVG R + + +NW+ Sbjct: 230 IHHYTIGQRKGLGIAAPEPLYVVKLDAVMNRVIVGNRAAGGRSDCTVGRLNWVSIAEPSS 289 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + V++R V V + + + V + F++++ G+ GQA VFY + V Sbjct: 290 PIT----AAVQVRYRSKAVAVTIIPIENNRVKLQFDEAQFGITPGQAAVFYNGEI----V 341 Query: 378 LGGGIISG 385 LGGGII Sbjct: 342 LGGGIIET 349 >gi|237738505|ref|ZP_04568986.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium mortiferum ATCC 9817] gi|229420385|gb|EEO35432.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium mortiferum ATCC 9817] Length = 357 Score = 429 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 138/372 (37%), Positives = 210/372 (56%), Gaps = 31/372 (8%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 D+ K++++ VAMSGGVDSS VA +LK+ GYD+IG+T++ C +D Sbjct: 13 DEKNKNIKIAVAMSGGVDSSTVAYILKKQGYDLIGITMR-------------TCNPED-E 58 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA++VC+ + + HYV D + F+ V+ F Y G+TP PC+ CN+ +KF L+ R Sbjct: 59 DAKKVCEDLGIPHYVLDATKEFKTKVMDYFIEEYLQGKTPNPCMVCNKHIKFGMLIDFAR 118 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 GAD +ATGHY + + V + D +DQ YFL ++ L L FP+GD Sbjct: 119 SKGADFMATGHYTQLKDGV---------LSMGDDPNKDQVYFLSQINKENLKYLMFPIGD 169 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNGQIL 253 ++K VR+LA ++G+ + K DSQ+ICFV+ GK + + G A +G+IV +G++L Sbjct: 170 LEKPKVRELAEQLGVRVYAKKDSQEICFVEDGKLKEFLLENTKGRAGKKGNIVTTDGKVL 229 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+HNG+ YTIGQR+GLG++ +PL+V+ LD ++ VIVG E L + +N + Sbjct: 230 GKHNGLAFYTIGQRKGLGISQEKPLYVIELDSKNNNVIVGDNEQLFKGELIAENVNLISF 289 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDF-EKSEVGVASGQACVFYTSD 371 E+ ++G C+ K RS ++ ++G V V F E V GQ VFY + Sbjct: 290 DRLEE--LNGVVCWAKTRSRDKLHKCQLEVLENGNVKVRFIEDKVRAVTPGQGVVFYNEE 347 Query: 372 SNEARVLGGGII 383 +VLG G I Sbjct: 348 ---KKVLGSGFI 356 >gi|67922387|ref|ZP_00515898.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Crocosphaera watsonii WH 8501] gi|67855731|gb|EAM50979.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Crocosphaera watsonii WH 8501] Length = 349 Score = 429 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 145/366 (39%), Positives = 199/366 (54%), Gaps = 23/366 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDSSV AA L+ GYDVIG+TL L K KG CC+ V DA +C+ Sbjct: 3 KVVVGLSGGVDSSVAAASLQHQGYDVIGLTLWLM------KGKGQCCSEGMV-DAAFICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140 + ++H++ D + F +I S Y +G TPLPC CNR VKF +L+ + +L D Sbjct: 56 QLGIAHHIVDTRDLFTENIIDYLVSGYESGVTPLPCSQCNRAVKFGPMLAYAQAELNCDR 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R D +R + R +D +DQSYFL+ +Q L FPLG+ KE Sbjct: 116 IATGHYARIDY---DKITQRYQLLRAVDRNKDQSYFLYDLSQDILKGTIFPLGEQTKEET 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R +A E L A K +SQD+C ++ G + + EG+IV L G++LG H G+ Sbjct: 173 RRIAAEFDLKTASKPESQDLCLIEAHGSMSTFLDQYIK--PKEGEIVDLEGKVLGTHQGV 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQRRGLG+A EPL+VV LD +RVIVG R + +NW+ Sbjct: 231 HHYTIGQRRGLGIAAPEPLYVVKLDAVMNRVIVGNRADGGRSDCTVGRLNWVSI----PE 286 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 V++R V V + +D V + F + + G+ GQA VFY + VL Sbjct: 287 PASPITAEVQVRYRSKAVRVTIIPLEDHRVKLQFNEPQFGITPGQAAVFYDGEI----VL 342 Query: 379 GGGIIS 384 GGGII Sbjct: 343 GGGIIE 348 >gi|332043246|gb|EGI79443.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lacinutrix algicola 5H-3-7-4] Length = 396 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 120/404 (29%), Positives = 193/404 (47%), Gaps = 48/404 (11%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RV+V +SGGVDSSV A LLK GY+VIG+ ++ ++ + C D DA V Sbjct: 2 KKRVIVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVT-ISDECPWLDDSNDAMLV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + + D E+++ ++ + Y G TP P V CNR +KF + + LGAD Sbjct: 61 AEKLGIPFQTVDLSEQYKERIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMKIALDLGAD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + + DG+ + D +DQSYFL +Q+QL FP+G+++K Sbjct: 121 YVATGHYCR-KGIIEKDGEEVYQLLSGKDNNKDQSYFLCQLSQEQLAKALFPIGELQKPE 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL----------- 248 VR++A + L ADK DSQ +CF+ + + D +++ EG IV + Sbjct: 180 VREIAAKADLITADKKDSQGLCFIGKVRLPDFLQQQLK--PKEGVIVEIPKDNANYSNTQ 237 Query: 249 ----------------------NGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDK 285 +G+I+G+H G +T GQR+GL V EPLFV+ D Sbjct: 238 ESFNSKTEELKYLSRKAEYAVADGEIVGKHQGAHYFTKGQRKGLSVGGKVEPLFVIDTDV 297 Query: 286 NSSRVIVGP---RESLEVHRIYLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF 340 + + G L +++ E++W+ L + + +IR Q Sbjct: 298 EENVIYTGQGKGHPGLYKKALFVSNDELHWVRPDLAL-KPDETLQVLARIRYRQTLENAT 356 Query: 341 VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + + + G+YV+FE + + GQ +Y D ++G G+IS Sbjct: 357 LHKVESGLYVEFENLQSAITEGQFVAWYLED----ELVGSGVIS 396 >gi|167895830|ref|ZP_02483232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 7894] Length = 339 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 116/351 (33%), Positives = 165/351 (47%), Gaps = 26/351 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVVV MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V Sbjct: 3 KRRVVVGMSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + ++ +++ V F Y+AG TP P V CN +KF L LGA Sbjct: 60 ADLIGIDVEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQ 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R G R + + D +DQSYFL Q QL FPLG++ K Sbjct: 120 TIATGHYARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTR 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++A ++GL A K DS ICF+ + + D + R G + +G+ +G H G+ Sbjct: 175 VREIAAQIGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGL 232 Query: 260 INYTIGQRRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311 YT GQR+G+G+ GEP FV D S+ + V L + ++W+ Sbjct: 233 AFYTFGQRKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWV 292 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPV----FVQRNDDGVYVDFEKSEVG 358 + DG +C K R Q P Q D+ + F++ + Sbjct: 293 AG----EPPADGARCGAKTRYRQADAPCAFGRAAQAGDERFSLVFDEPQWA 339 >gi|310821277|ref|YP_003953635.1| tRNA-specific 2-thiouridylase mnma [Stigmatella aurantiaca DW4/3-1] gi|309394349|gb|ADO71808.1| tRNA-specific 2-thiouridylase MnmA [Stigmatella aurantiaca DW4/3-1] Length = 348 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 157/364 (43%), Positives = 209/364 (57%), Gaps = 18/364 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MRVVVAMSGGVDSS AALLK G++VIG+TL+++ S + + GSCC+ D+ DAR V Sbjct: 1 MRVVVAMSGGVDSSAAAALLKEQGHEVIGITLRVW-SYEGKAQCGSCCSPDDIDDARAVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +++ YV + EE F++ VI PF SY G TP+PCV CNR VKF+ LL R LGA Sbjct: 60 QKLDIPFYVANAEEIFKDRVINPFVQSYLGGRTPIPCVACNRDVKFNFLLKRARALGA-Q 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R + R ++ R +DL +DQSYFLF Q +L D+ FP+G M K V Sbjct: 119 LATGHYARV-----EREGDRHVLRRAVDLAKDQSYFLFTLGQAELADVLFPVGGMTKAEV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A L + K +S +ICFV G Y V+++ AG GDI+ +G +LG H GI Sbjct: 174 RAVAERHALPTSQKPESMEICFVPDGDYAGFVEKV-AGPQPSGDIIDTDGHVLGTHGGIH 232 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +T+GQRRGL + GE +V L+ ++RV+VG + L + +W+ D Sbjct: 233 RFTVGQRRGLNLGGGEARYVQRLEPEANRVVVGTASAAGRDAFGLLQPHWVDAPPAPDQT 292 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 V+ V+IR VP V+ + G V V E V GQA V Y D RVLG Sbjct: 293 VE-----VRIRHRHAGVPGRVEISTHGLVSVRLEAPARAVTPGQAAVVYAQD----RVLG 343 Query: 380 GGII 383 GG I Sbjct: 344 GGWI 347 >gi|85709728|ref|ZP_01040793.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erythrobacter sp. NAP1] gi|85688438|gb|EAQ28442.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erythrobacter sp. NAP1] Length = 390 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 184/380 (48%), Positives = 236/380 (62%), Gaps = 20/380 (5%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 DL + + R+VVAMSGGVDSSVVAAL G +VIG+TLQLY+ A+ RKG+CCAG Sbjct: 21 FDLPRPASECRIVVAMSGGVDSSVVAALAADTGAEVIGITLQLYDYGAATGRKGACCAGD 80 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DAR V D + ++HYVFD+E FR V+ FA Y AG TP+PC+ CN KF+DL Sbjct: 81 DIADARAVSDRLGIAHYVFDHESAFREDVVEQFADEYLAGRTPVPCIRCNMGPKFTDLFR 140 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + R+LGAD LATGHY+R + + + R D RDQSYFL+ATTQ+QL +RFP Sbjct: 141 MARELGADCLATGHYVRRV-----EAEGGPHLYRANDPSRDQSYFLYATTQEQLDFIRFP 195 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250 LG + K VR+LA GL A K DSQDICFV G Y +VK++ + G IVH G Sbjct: 196 LGGLPKTKVRELAEAAGLRNAAKPDSQDICFVPDGNYAGIVKKLRPEGGVPGAIVHAATG 255 Query: 251 QILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 + LG H GII+YT+GQR+GL + EPL+V+ LD S V VGP+ L V + E N Sbjct: 256 ETLGDHKGIIHYTVGQRKGLEIGGQPEPLYVISLDAESREVRVGPKRMLGVESAEVIETN 315 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYV--DFEKSEVGVASGQACV 366 +G A+ DG + K+RS PVPV ++ + DG V FE+ E GVA GQA V Sbjct: 316 RIG------AIPDGAQLTAKVRSLAKPVPVTLEGDLGDGATVTLHFEQPEFGVAPGQAAV 369 Query: 367 FYTSDSNEARVLGGGIISGS 386 Y D RV+GGG I+ + Sbjct: 370 IYADD----RVIGGGWINAT 385 >gi|295099800|emb|CBK88889.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eubacterium cylindroides T2-87] Length = 386 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 116/381 (30%), Positives = 184/381 (48%), Gaps = 29/381 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73 M+V+V +SGGVDS+V A LLK GYDV ++ ++S G+ C QD Sbjct: 1 MKVLVGLSGGVDSAVAAYLLKEQGYDVTCCFMRNWDSYANGDIAGNPTIQDDTCPQEQDY 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ V + +N+ D+ + + + V F S Y G TP P + CN+ +KF Sbjct: 61 QDAKAVAEHLNLPLQRVDFIKEYWDYVFKTFLSEYEKGRTPNPDILCNKYIKFDAFFDYA 120 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + G D++ATGHY + + R D +DQ+YFL + L FPLG Sbjct: 121 MKQGFDMVATGHYCSNMTE-----GSFTYLTRAADTNKDQTYFLCQVSPAALHKTLFPLG 175 Query: 194 DMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQ 251 + K VR++A ++ L+ +A K DS ICF+ + + + + +G+IV ++ G+ Sbjct: 176 KLIKPEVREIAAKLNLESVATKKDSTGICFIGERNFRQFLSNYLP--SQDGNIVDVDTGK 233 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPR---ESLEVHRIYLRE 307 ++GRH G++ YTIGQR+GL + + P FV+ D + + V E L ++ Sbjct: 234 VVGRHVGVLYYTIGQRKGLNIDHEKGPWFVIGKDVQKNVLFVCHHTHKEWLYSDSCLVKG 293 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366 INW+ +D KC K R Q ++++ DD V + + V GQ V Sbjct: 294 INWI----VKDKNEIPEKCTCKFRYRQPDQDIYLKVLDDTTALVSYPQKIASVTIGQEAV 349 Query: 367 FYTSDSNEARVLGGGIISGSK 387 FY + +GGG+I Sbjct: 350 FYDG----FKCIGGGVIEEVY 366 >gi|163789149|ref|ZP_02183592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Flavobacteriales bacterium ALC-1] gi|159875562|gb|EDP69623.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Flavobacteriales bacterium ALC-1] Length = 395 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 123/403 (30%), Positives = 197/403 (48%), Gaps = 48/403 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RV+V +SGGVDSSV A LLK GY+VIG+ ++ ++ + C +D DA V Sbjct: 2 KRVIVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVT-ISDECPWLEDSNDAMLVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + D +++ ++ + Y G TP P V CNR +KF + + +LGAD Sbjct: 61 DKLGIPFQTVDLSVQYKERIVDYMFNEYEKGRTPNPDVLCNREIKFDVFMDIALELGADY 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + DGK + D +DQSYFL +Q QL FP+G++ K V Sbjct: 121 VATGHYCRKST-IEKDGKVIHQLLSGADNNKDQSYFLCQLSQAQLAKALFPIGELTKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248 R++A+ GL A+K DSQ +CF+ + + + +++ EG IV + Sbjct: 180 REIAKAQGLITAEKKDSQGLCFIGKVRLPEFLQQQLK--PKEGVIVEVDSAFEIFSQSIP 237 Query: 249 ---------------------NGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKN 286 +G+++G+H G +T GQR+GLGV EPLFV+ D Sbjct: 238 DFKSKENELEFFSKKPEYAITDGKVVGKHQGAHYFTKGQRKGLGVGGTIEPLFVIDTDVK 297 Query: 287 SSRVIVGP---RESLEVHRIYLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341 + + G L + ++++ E++W+ + L A D + +IR Q + Sbjct: 298 ENIIFTGQGKNHPGLLRNVLFVKNDELHWVREDLAL-AEGDTMQVMARIRYRQALENATL 356 Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + G+YV+FE + + GQ +Y +D +LG G+IS Sbjct: 357 HKVASGLYVEFENQQSAITEGQFVAWYLND----ELLGSGVIS 395 >gi|85860332|ref|YP_462534.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Syntrophus aciditrophicus SB] gi|123517346|sp|Q2LWA6|MNMA1_SYNAS RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 gi|85723423|gb|ABC78366.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Syntrophus aciditrophicus SB] Length = 372 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 142/367 (38%), Positives = 200/367 (54%), Gaps = 19/367 (5%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RV++A+SGGVDSSV A LLK +GY+V GVT+ L + + K CC + + DAR V Sbjct: 20 KKRVLLAISGGVDSSVAALLLKEEGYEVAGVTMCL--GVREEENKVRCCGREAIEDARGV 77 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C+ + + HYV DY VI F Y G TP PC+DCNR +KF LL R +G D Sbjct: 78 CEILGIPHYVLDYAPLLETCVIDKFVREYRLGRTPNPCIDCNRYLKFGHLLDSARTMGFD 137 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 LATGHY + + + R I+ + DL +DQ+YFL+ L + FPL D K+ Sbjct: 138 YLATGHYAKI-----ERKESRWILKKAKDLVKDQTYFLYPIPVAALEHILFPLADRTKDE 192 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR++AR+ L IA+K +SQD+CFV Q Y D ++ G IV +G++LG H+G Sbjct: 193 VREIARQALLPIAEKPESQDLCFVTQDSYRDFLQEQG-CPVHPGPIVDRSGRVLGEHSGT 251 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 + YTIGQR GLG++ PL+VV +D + VIV +E + + E+NWL ++A Sbjct: 252 VFYTIGQRHGLGISSPFPLYVVAIDVAGNSVIVSGKEDVYAQGLVAGEMNWLTPERPQEA 311 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 +IR + + D + V F + + V GQA V Y D VLG Sbjct: 312 -------EARIRHRKRTCSCRIVPEGDRIRVYFAEDQDAVTPGQAVVLYQED----EVLG 360 Query: 380 GGIISGS 386 GG+I + Sbjct: 361 GGVIEEA 367 >gi|87306814|ref|ZP_01088960.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Blastopirellula marina DSM 3645] gi|87290187|gb|EAQ82075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Blastopirellula marina DSM 3645] Length = 363 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 142/376 (37%), Positives = 202/376 (53%), Gaps = 31/376 (8%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNS-----------------RKASKRKGSCCA 69 MSGGVDSSV A LL +G++VIGV ++ K CC+ Sbjct: 1 MSGGVDSSVAAHLLLEEGHEVIGVFMRHGEQSPVASCQIDGQSALPILNDRPDHKQGCCS 60 Query: 70 GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 D DARRV D + + Y + + F +I F Y AG TP PCV CN +KF L Sbjct: 61 ASDAADARRVADNLQIPFYALNLQREF-GQIIDYFVDEYVAGRTPNPCVMCNNWIKFGKL 119 Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 +GA+ +ATGHY R + D + R +D +DQ+Y LF ++ L + Sbjct: 120 FDYADSVGAEYVATGHYAR---LITDQTDALPRLVRGVDSGKDQTYVLFGIGREYLRRML 176 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 P+G +K +R+LA ++G+ +ADK DSQ+ICFV GK+ + +K A + G+IV Sbjct: 177 LPVGQFEKSRIRELAGQIGMRVADKKDSQEICFVTSGKHDEFIKSRRADLQTAGEIVTTA 236 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 G+++G H+GI YTIGQR+GLGVA+GEP FVV +D +++V++G +E L + R+ N Sbjct: 237 GEVVGTHDGIEKYTIGQRKGLGVALGEPRFVVRIDAETNQVVIGEKEELGRTELTARDCN 296 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 WL D +C +IR + D P V+ DG + V F++ GVA GQA V Y Sbjct: 297 WLV-----DLPAGPLRCRAQIRYNSDDAPATVEHLPDGRIAVTFDEPRRGVAPGQAVVCY 351 Query: 369 TSDSNEARVLGGGIIS 384 D +VLGGG I Sbjct: 352 DGD----QVLGGGWIE 363 >gi|255506865|ref|ZP_05382504.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis D(s)2923] gi|289525326|emb|CBJ14802.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydia trachomatis Sweden2] gi|296434876|gb|ADH17054.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis E/150] gi|296438596|gb|ADH20749.1| tRNA-specific 2-thiouridylase MnmA [Chlamydia trachomatis E/11023] Length = 358 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 129/371 (34%), Positives = 187/371 (50%), Gaps = 29/371 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 ++VAMSGGVDSSVVA LLK+ G +V+G+ ++ + + + G C A +D D R+ Sbjct: 3 KTIIVAMSGGVDSSVVAYLLKKQGECNVVGLFMKNWGEQDEN---GECTATKDFRDVERI 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + +++ +Y + + ++ V F YA G TP P V CNR +KF L R+L D Sbjct: 60 AEQLSIPYYTVSFSKEYKERVFSRFLREYANGYTPNPDVLCNREIKFDLLQKKVRELKGD 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 LATGHY R G DG + R +D +DQSYFL T + L ++ FPLG M K Sbjct: 120 FLATGHYCR----GGADGTG---LSRGIDPNKDQSYFLCGTPKDALSNVLFPLGGMYKTE 172 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258 VR +A+E GL A K DS ICF+ + + +++ A GDI+ + Q++GRH G Sbjct: 173 VRRIAQEAGLATATKKDSTGICFIGKRPFKSFLEQFVADS--PGDIIDFDTQQVVGRHEG 230 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDG 314 YTIGQRRGL + M +P +V+ + + V + L + +E+NW Sbjct: 231 AHYYTIGQRRGLNIGGMEKPCYVLSKNMEKNIVYIVRGEDHPLLYRQELLAKELNWFV-- 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + + C K+R V +DG V V F+ V GQ FY D Sbjct: 289 ----PLQEPMICSAKVRYRSPDEKCSVYPLEDGTVKVIFDVPVKAVTPGQTVAFYQGDI- 343 Query: 374 EARVLGGGIIS 384 LGGG+I Sbjct: 344 ---CLGGGVIE 351 >gi|290969182|ref|ZP_06560707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Megasphaera genomosp. type_1 str. 28L] gi|290780688|gb|EFD93291.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Megasphaera genomosp. type_1 str. 28L] Length = 362 Score = 428 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 138/366 (37%), Positives = 196/366 (53%), Gaps = 14/366 (3%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR---KASKRKGSCCAGQDVYDARRV 79 V VAMSGGVDSSV A LL+R G DVIG+TL+L+ + + ++ +CC+ V DA+ V Sbjct: 5 VAVAMSGGVDSSVTAGLLQRRGLDVIGITLRLWEAPPTCEVTENIHACCSLSAVEDAKAV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + HY D+ + F VI F +Y G+TP PC+ CN+ +KF L +Q GAD Sbjct: 65 ADVLGIPHYTLDFRDVFSQDVITYFIQAYKDGKTPNPCIACNKWIKFGLLWQRAQQFGAD 124 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 LATGHY R V D ++ + R D +DQSY L+ Q L + FP+ ++ K Sbjct: 125 FLATGHYAR---IVYDARRKVYSLLRGADRRKDQSYVLYQLQQDLLPHILFPMAELTKTE 181 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R LA+E L + +K +SQDICF+ Y ++ + G+ V G++LG H GI Sbjct: 182 TRRLAKEWHLPVFNKPESQDICFIPDNDYKKFLRSRAPQHFIPGNFVDKEGRVLGTHAGI 241 Query: 260 INYTIGQRR-GLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 YT+GQRR G P +V LD +RVIVG L + ++E+ W+ E+ Sbjct: 242 PCYTVGQRRGLHLGGPGGPYYVTALDVPHNRVIVGGAADLFRTAVEVQEVTWV-----EE 296 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 F KIR + P V +D + V+F + V +GQA V Y + + RV Sbjct: 297 TPETDFSALGKIRYAAKEAPCRVHVSDGARMRVEFVTPQRAVTAGQALVLYDA-ATGERV 355 Query: 378 LGGGII 383 LGGGII Sbjct: 356 LGGGII 361 >gi|313206777|ref|YP_004045954.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Riemerella anatipestifer DSM 15868] gi|312446093|gb|ADQ82448.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Riemerella anatipestifer DSM 15868] gi|315023849|gb|EFT36851.1| tRNA-specific 2-thiouridylase MnmA [Riemerella anatipestifer RA-YM] gi|325335784|gb|ADZ12058.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Riemerella anatipestifer RA-GD] Length = 395 Score = 428 bits (1102), Expect = e-118, Method: Composition-based stats. Identities = 121/403 (30%), Positives = 193/403 (47%), Gaps = 47/403 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+VVV +SGGVDSSV A LL++ G++VIG+ ++ +N + C +D DA V Sbjct: 1 MKVVVGLSGGVDSSVAAYLLQQQGHEVIGLFMRNWNDASVTLED-ECPWIEDSNDALLVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + V D E ++ ++ Y G TP P V CNR VKF + LGAD Sbjct: 60 QKLGIPFQVIDMSELYKERIVDYMFEEYEKGRTPNPDVLCNREVKFDVFMKTALSLGADK 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R ++G + D +DQSYFL Q+QL FP+G++ K V Sbjct: 120 VATGHYARLSTTEDENGTTTYHLLAGKDHNKDQSYFLCQLNQEQLSKALFPIGELTKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248 R++A+E+GL A+K DSQ +CF+ + +++ EG+I+ + Sbjct: 180 REIAKEIGLVTANKKDSQGLCFIGKVSLPQFLQQQLK--PKEGEIIEIFKDFKAYHQPRP 237 Query: 249 ---------------------NGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKN 286 +G+ +G+H G +TIGQ +GLG+ E F++ D Sbjct: 238 SFSNKYEELKYLSKKITYQKSDGKSIGKHQGAQFFTIGQSKGLGIGGHKESCFIISRDVK 297 Query: 287 SSRVIVGPR---ESLEVHRIYLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341 + + VG L I + +I+W+ + L E + + +IR Q + Sbjct: 298 ENLIFVGEGKNFPGLFQKVIKIEPNDIHWVREDL-ELKNNETMEVMARIRYRQPLEKATL 356 Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + +DG+Y++FE + VA GQ +Y D ++G G+IS Sbjct: 357 HKYEDGLYIEFENPQSAVAEGQFAAWYLED----ELVGSGVIS 395 >gi|42526204|ref|NP_971302.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Treponema denticola ATCC 35405] gi|81570437|sp|Q73PV6|MNMA_TREDE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|41816316|gb|AAS11183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Treponema denticola ATCC 35405] Length = 366 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 136/358 (37%), Positives = 184/358 (51%), Gaps = 16/358 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+V+V +SGGVDS+V A LL GYDV GVT+QL ++ D+ DA++V Sbjct: 1 MKVLVGLSGGVDSAVAAKLLIDQGYDVTGVTMQLLPKLSGIYKE----QTDDIEDAKKVA 56 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + H V+D E F+ +I F Y G TP PC CN +KF L + G D Sbjct: 57 DKLGIKHIVYDMRETFKTEIIDYFVEEYKQGRTPNPCFICNSKIKFGLFLEQALKDGFDK 116 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + +G R ++ + D ++DQSYFL TQ+QL FPLGD KE V Sbjct: 117 IATGHYAKIEK-TEIEGDERFLLRQAEDAQKDQSYFLALLTQEQLSRSIFPLGDFTKEKV 175 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A + DSQDICFV Y V+ + AG EG + G +GRH G+ Sbjct: 176 RSIAEDAGLINAHRPDSQDICFVPDDDYTRVINALAAGSFKEGKFIDTMGNEIGRHKGLQ 235 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQRRGL +AMG P++VV D ++ V VG E L + +N + + + Sbjct: 236 YYTIGQRRGLAIAMGYPVYVVKKDAKTNTVTVGKDEELFAESLIASRVNII----LKKTI 291 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDD-------GVYVDFEKSEVGVASGQACVFYTSD 371 VK R Q + + V+F + E VA GQA VFYT D Sbjct: 292 DKEIDIEVKTRYRQQKKKAKLIPLKNEEFKPTGKFKVEFIEPEKAVAEGQAAVFYTGD 349 >gi|332187411|ref|ZP_08389149.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sphingomonas sp. S17] gi|332012572|gb|EGI54639.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sphingomonas sp. S17] Length = 365 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 185/379 (48%), Positives = 239/379 (63%), Gaps = 22/379 (5%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L +P+ R+VVAMSGGVDSSVVAAL G + IGVTLQLY+ +A R G+CCAG+ Sbjct: 4 FQLGGDPRAKRIVVAMSGGVDSSVVAALAHATGAETIGVTLQLYDHGEAVGRAGACCAGR 63 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DAR VCD + ++HYVFD+E+ FR V+ FA Y AG TP+PCV CN KF+DLL Sbjct: 64 DIRDARAVCDRLGIAHYVFDHEDSFRTQVVDRFADEYLAGRTPIPCVQCNMGPKFTDLLK 123 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + R LGAD LATGHY+R +G + R D RDQSYFLFATTQ+QL LRFP Sbjct: 124 LARDLGADCLATGHYVRRV-----EGTHGAELHRGADPARDQSYFLFATTQEQLNFLRFP 178 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LG + K VR++A E+ L +A K DSQDICFV G Y +VK++ GDI+ L+G Sbjct: 179 LGALPKSRVREIAAELSLSVAAKPDSQDICFVPDGDYAGLVKKLRPEADTRGDIIDLSGA 238 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 LG H G+I+YT+GQRRGL + EPL+VV L+ ++ RV+VGPR +L V L +N Sbjct: 239 KLGEHRGLIHYTVGQRRGLEIGGSPEPLYVVRLEPDTKRVVVGPRTALAVEAARLTGMNI 298 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 LG +DG F K+RS PVP + + + F+ E GV+ GQA V Y Sbjct: 299 LG-------PLDG-PLFAKVRSMAKPVPARMVGD----RLVFDAPEYGVSPGQAAVLYDG 346 Query: 371 DSNEARVLGGGIISGSKRS 389 D RVLGGG I+ ++ + Sbjct: 347 D----RVLGGGWIAETEAA 361 >gi|168700409|ref|ZP_02732686.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Gemmata obscuriglobus UQM 2246] Length = 357 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 143/370 (38%), Positives = 195/370 (52%), Gaps = 26/370 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL----YNSRKAS-KRKGSCCAGQDVYDA 76 RVV+AMSGGVDSS A LLK+ G++VIG+ ++ ++ K CC+ D DA Sbjct: 3 RVVLAMSGGVDSSASAVLLKKQGHEVIGLFMRTGTHGHDQPDERRDNKKGCCSAIDAGDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRV D +++ Y D+E F N +I FA Y G TP PCV CN +KF L + ++L Sbjct: 63 RRVADKLDIPFYALDFESEF-NRIIDYFADEYVRGRTPNPCVVCNNWLKFGQLWTFGQKL 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + R +G+ + + +D ++DQSY L ++ L L FP+G Sbjct: 122 GADFIATGHYAQVR-----NGE----LHKGVDADKDQSYVLHGIKREVLPHLLFPVGGYT 172 Query: 197 KESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K +R ARE L +A+K DS +ICFV G + DVV+ G A G I +G +LG Sbjct: 173 KPQIRQFAREASLVGVAEKPDSVEICFVPSGNHTDVVRARRPGAATAGVIAERDGTVLGD 232 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H+GI YTIGQR+GL + G+ FV+ L ++ V+VG L + +NWL Sbjct: 233 HDGIDRYTIGQRKGLNIGGGKKRFVLELLAETNTVVVGDESDLLSSGLVASGMNWL---- 288 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNE 374 D + C KIR VP V D G V F+ + V GQA Y Sbjct: 289 -IDPPTEPLTCVAKIRYRHAGVPATVTALPDGGAEVVFDAPQPAVTPGQALALYDG---- 343 Query: 375 ARVLGGGIIS 384 RVLGGG I Sbjct: 344 TRVLGGGWIE 353 >gi|269303316|gb|ACZ33416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydophila pneumoniae LPCoLN] Length = 361 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 122/369 (33%), Positives = 182/369 (49%), Gaps = 27/369 (7%) Query: 23 VVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 V+VAMSGGVDSSVVA L K+ Y VIG+ ++ + G C + +D D RVC Sbjct: 5 VIVAMSGGVDSSVVAYLFKKFTNYKVIGLFMKNWEEDSEG---GLCSSTKDYEDVERVCL 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +Y + + +R V F Y+ G TP P + CNR +KF L ++LG D L Sbjct: 62 QLDIPYYTVSFAKEYRERVFARFLKEYSLGYTPNPDILCNREIKFDLLQKKVQELGGDYL 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + + + R D ++DQSYFL T + L ++ FPLG+M K VR Sbjct: 122 ATGHYCRLNTELQE-----TQLLRGCDPQKDQSYFLSGTPKSALHNVLFPLGEMNKTEVR 176 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGII 260 +A + L A+K DS ICF+ + + + +++ G+I+ + +I+G+H G Sbjct: 177 AIAAQAALPTAEKKDSTGICFIGKRPFKEFLEKFLPN--KTGNIIDWDTKEIVGQHQGAH 234 Query: 261 NYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDGLF 316 YTIGQRRGL + E P +VV + + + + L + + RE+NW Sbjct: 235 YYTIGQRRGLDLGGSEKPCYVVGKNIEENSIYIVRGEDHPQLYLRELTARELNWFT---- 290 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 G C K+R + +DD V V F + V GQ FY D+ Sbjct: 291 --PPKSGCHCSAKVRYRSPDEACTIDYSSDDEVKVRFSQPVKAVTPGQTIAFYQGDT--- 345 Query: 376 RVLGGGIIS 384 LG G+I Sbjct: 346 -CLGSGVID 353 >gi|124003360|ref|ZP_01688210.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Microscilla marina ATCC 23134] gi|123991458|gb|EAY30889.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Microscilla marina ATCC 23134] Length = 386 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 130/386 (33%), Positives = 210/386 (54%), Gaps = 19/386 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76 K RV+VAMSGG+DSS+ A LL GY+V+G+T++ ++ S SK++ CC+ + DA Sbjct: 3 KKGRVLVAMSGGIDSSLAAVLLHEQGYEVVGITMKTWDYASSGGSKKETGCCSLDSINDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + + H + D F + VI F + Y G TP PCV CN +K+ LL +L Sbjct: 63 RNIAVDLGFPHLILDIRNEFGDYVIDHFTNEYLDGRTPNPCVLCNTHIKWDALLRRADKL 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 + +ATGHY R + R ++ + +D +DQSY L+ +QQ L PLG + Sbjct: 123 DCEHIATGHYANIR-----EENGRYVISKGIDEGKDQSYALWGVSQQSLSRTILPLGQLY 177 Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252 K +R++A E G ++ +KS+S +ICFV Y +KR + + GD + +G + Sbjct: 178 KSQIREMAIERGFVELVNKSESYEICFVPDNDYRGFLKRRVPELEEKVDGGDFILEDGTV 237 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G+H G YTIGQR+GLG+A+G P++V +DKN++RV++G + LE + + + ++ Sbjct: 238 VGKHKGYPFYTIGQRKGLGIALGYPVYVTGIDKNNNRVVLGTVKDLEKNGMIVNQL---T 294 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + D + K+R + + P ++ +D + V F + +A GQA VFY D Sbjct: 295 LQKYADMKGKPLETVTKVRYNHEGAPARIEQVSDHEIKVWFHEEVSAIAPGQAAVFYEGD 354 Query: 372 SNEARVLGGGIISGSKRSDAVEESLL 397 +GGG I S + EE ++ Sbjct: 355 DM----IGGGWIKSSFKWQENEEGII 376 >gi|253699615|ref|YP_003020804.1| tRNA-specific 2-thiouridylase MnmA [Geobacter sp. M21] gi|251774465|gb|ACT17046.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacter sp. M21] Length = 355 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 154/375 (41%), Positives = 210/375 (56%), Gaps = 25/375 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQD 72 + N K +V VAMSGGVDSS VAALLK G +VIG+ ++L+ + + KG Sbjct: 1 MSANYKGRKVAVAMSGGVDSSTVAALLKEQGAEVIGINMKLFARDGEDPQAKG------- 53 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DA+ V + + + ++ EE F ++ F + Y GETP PCV CNR VKF LL Sbjct: 54 --DAQIVAEYLGIEFHLVHLEEEFSRLIMEDFRAQYLGGETPNPCVRCNRYVKFGLLLDK 111 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 +LGA+ LATGHY+R+ D + + L +DQSYFL+ TQ+QL + FPL Sbjct: 112 ALELGAEYLATGHYVRTSR----DDGGSYHLLKAAFLAKDQSYFLYTLTQKQLSHVVFPL 167 Query: 193 GDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 GDM K+ VR LA + GL +A KSDSQ+ICFV Y +++ GDIVH++G Sbjct: 168 GDMPSKDEVRRLAEKFGLPVAQKSDSQEICFVPGDDYVAFLEKGGRVAGKSGDIVHVDGA 227 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 +LGRH+G YTIGQRRGLGVA EPL+VV +D RV+VG L + ++NW+ Sbjct: 228 VLGRHSGTHRYTIGQRRGLGVAWKEPLYVVSIDALEGRVVVGEVGRLFAAGLVACDLNWV 287 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTS 370 + F+ KIR Q P+ V+ +G+ V F + + V GQ+ VFY Sbjct: 288 VPVE-----GETFETTCKIRYRQQPIACRVKLLGEGLGEVFFAEPQKSVTPGQSVVFYRD 342 Query: 371 DSNEARVLGGGIISG 385 D +LGGG I G Sbjct: 343 D----ELLGGGRIVG 353 >gi|62184976|ref|YP_219761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydophila abortus S26/3] gi|73920121|sp|Q5L6D1|MNMA_CHLAB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|62148043|emb|CAH63795.1| tRNA-methyltransferase [Chlamydophila abortus S26/3] Length = 362 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 129/381 (33%), Positives = 184/381 (48%), Gaps = 28/381 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + VVVAMSGGVDSSVVA LLK+ Y V+G+ ++ + ++ G C +D D R Sbjct: 2 NKTVVVAMSGGVDSSVVAYLLKKYTSYRVLGIFMKNWEEEDSN---GLCSTAKDYEDVER 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + +++ +Y + +R V F Y+ G TP P V CNR +KF L +LG Sbjct: 59 VAEQLDIPYYTVSFAREYRERVFSRFLKEYSQGYTPNPDVLCNREIKFDLLQKKVVELGG 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY R D +R + R D +DQSYFL T + L ++ FPLGDM K Sbjct: 119 DFLATGHYCRL-----DVKSQRVGLLRGKDPHKDQSYFLCGTHPESLKNVLFPLGDMTKR 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHN 257 VR +A + GL A K DS ICF+ + + +++ + EG+I+ + +I+G H Sbjct: 174 EVRSIAAQAGLATAQKRDSTGICFIGKRPFKSFLEQFVPNV--EGEIIDYDSQKIVGNHE 231 Query: 258 GIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313 G YTIGQRRGL + E P +VV D + V + L + +E+NW Sbjct: 232 GAHYYTIGQRRGLDIGGSEKPCYVVGKDMEKNIVYIVRGEDHPLLYQQELTAKELNWFV- 290 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + +C K+R + D V V F + GQ FY + Sbjct: 291 -----SPESITRCSAKVRYRSPDEECEILHTGTQDTVRVRFTSPVKAITPGQTIAFYDGE 345 Query: 372 SNEARVLGGGIISGSKRSDAV 392 R LGGGII + +V Sbjct: 346 ----RCLGGGIIEVAMTPHSV 362 >gi|86133287|ref|ZP_01051869.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Polaribacter sp. MED152] gi|85820150|gb|EAQ41297.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Polaribacter sp. MED152] Length = 395 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 122/403 (30%), Positives = 197/403 (48%), Gaps = 48/403 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RVVV +SGGVDSSV A LLK GY+VIG+ ++ ++ + C +D DA V Sbjct: 2 KRVVVGLSGGVDSSVTAHLLKEQGYEVIGLFMKNWHDDSVT-ISNECPWLEDSNDAMIVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + V D E+++ ++ + Y G TP P V CNR +KF + + +LGAD Sbjct: 61 EKLGIPFQVVDLSEQYKERIVDYMFAEYEKGRTPNPDVLCNREIKFDVFMDIALKLGADY 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + DD K + D +DQSYFL +QQQL FP+G++ K V Sbjct: 121 VATGHYCRKAEEIIDD-KPVYKLLAGKDNNKDQSYFLCQLSQQQLAKALFPIGELTKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248 R++A+E L A+K DSQ +CF+ + + + +++ +GDIV + Sbjct: 180 REIAKEADLITAEKKDSQGLCFIGKVRLPEFLQQKLQ--PKKGDIVTIPSDFSDYIKEQP 237 Query: 249 ---------------------NGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKN 286 +G+++G H G +T GQR+GL V E L+V+ D Sbjct: 238 KFESKEEELKYLSTKFTYNKTDGKVVGIHQGAHYFTKGQRKGLNVGGTKEALYVIETDVE 297 Query: 287 SSRVIVG---PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341 + + G L + +++ EI+W+ + L + + +IR Q + Sbjct: 298 ENVIYTGEGKQHPGLYRNVLFVANEEIHWIREDL-TLKPSETMQVEARIRYRQVLEQATL 356 Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + D G+YV+FE + + GQ +Y ++ +LG G+IS Sbjct: 357 YKVDSGLYVEFENKQSAIQEGQFVAWYKNE----ELLGSGVIS 395 >gi|257063219|ref|YP_003142891.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Slackia heliotrinireducens DSM 20476] gi|256790872|gb|ACV21542.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Slackia heliotrinireducens DSM 20476] Length = 353 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 138/363 (38%), Positives = 196/363 (53%), Gaps = 15/363 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RV+V MSGGVDSSV A LL R GY+V+G T+ LY+ + D+ DAR V Sbjct: 3 QRVLVGMSGGVDSSVTAYLLLRQGYEVVGATMNLYDPGRLGVPDVRDGESNDLEDARSVA 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + ++H+V D+ F N V+ PFA +YA G TP PC+ CNR +KF +L R+LG D Sbjct: 63 NRLGIAHHVLDFGCEFENNVVRPFAQAYADGLTPNPCIACNRHLKFGLMLKAARELGCDG 122 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + R ++ + +D +DQ+Y L+ TQ QL PLG+ K+ V Sbjct: 123 IATGHYARIAQRLD----GRFVLMKGLDDAKDQAYVLYHMTQDQLAHTVLPLGEYTKQQV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E G A K +SQDICFV G Y ++R + GD++ NG +LG+H G I Sbjct: 179 RAIAAEQGFANARKHESQDICFVPDGDYVGFLERYAGLVPEPGDVLDENGAVLGQHRGAI 238 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YT+GQR+G+G+A + L+V D ++ + +GP ++L + NW+ Sbjct: 239 RYTLGQRKGIGIASTQALYVTAKDMAANTITMGPADALLADGCTVGNWNWILPD------ 292 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 VK Q P V +DG V DF++ A GQ+ V Y D+ VLG Sbjct: 293 EGPVHAMVKTHYRQKPHGAMVVPQEDGTVRFDFDEPSRLAAPGQSAVAYIGDT----VLG 348 Query: 380 GGI 382 GGI Sbjct: 349 GGI 351 >gi|254423006|ref|ZP_05036724.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. PCC 7335] gi|196190495|gb|EDX85459.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. PCC 7335] Length = 365 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 146/377 (38%), Positives = 206/377 (54%), Gaps = 26/377 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++VV +SGGVDSSV AA L G++VIG+TL L K KG CC+ + + DA ++CD Sbjct: 3 KIVVGLSGGVDSSVAAATLHNQGHEVIGLTLWLM------KGKGQCCS-EGMTDAAKLCD 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140 + +++ V D E F ++ Y+ G TPLPC CN TVKF +L ++GAD Sbjct: 56 HLGIAYNVVDSREVFEKYIVNYLVEGYSRGVTPLPCSQCNSTVKFGPMLDYAVNEMGADY 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + R + R +D +DQSYFL+ +Q L +FPLGD K Sbjct: 116 IATGHYARITHNL---ETGRYELRRAVDRNKDQSYFLYDLSQTHLAASQFPLGDTTKSET 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R +A +GL A+K +SQD+C V+ G + + A GDIV +GQ+LG+H GI Sbjct: 173 RKIAASLGLHTAEKPESQDLCLVEQHGSMKTFLDKFLA--PKPGDIVTTSGQVLGQHEGI 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQRRGLG+A PL+VV LD ++V+VG R+S+ H + +NW+ Sbjct: 231 HHYTIGQRRGLGIAAPNPLYVVSLDVGRNQVVVGERDSVTSHGCIVHRVNWVSIA----P 286 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRN-----DDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 V+IR V V D V + F++ + GV GQA V+Y ++ Sbjct: 287 PTSPISVEVQIRYRSQAVQATVIPTCRVDGTDRVRIIFDEPQFGVTPGQAAVWYD---SK 343 Query: 375 ARVLGGGIISGSKRSDA 391 RVLGGGII + D Sbjct: 344 GRVLGGGIIEPTCSDDT 360 >gi|88812884|ref|ZP_01128128.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrococcus mobilis Nb-231] gi|88789806|gb|EAR20929.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitrococcus mobilis Nb-231] Length = 374 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 115/382 (30%), Positives = 181/382 (47%), Gaps = 27/382 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 R +V +SGGVDS+V A LL G+ + G+ ++ + C A QD+ A++VC Sbjct: 5 TRYIVGLSGGVDSAVAALLLLEQGHAIQGLFMRNWEDDD---TATYCSAEQDLAYAKQVC 61 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +++ +V ++ +R V Y G TP P + CN+ +KF ++ ++LG D Sbjct: 62 AQLDIPLHVANFAHEYRAEVFDHCLREYRRGHTPNPDILCNQRIKFHAFINYAQRLGTDH 121 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R+ G + + D ++DQSYFL+ Q+QL FPLG+ K +V Sbjct: 122 IATGHYARNIERHGT-----YHLFKAKDADKDQSYFLYTLGQRQLARATFPLGEHAKSTV 176 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R LA + G D D+ DS ICF+ + + + R G I G ++GRH G+ Sbjct: 177 RALAEQAGFDNFDRKDSTGICFIGERAFRPFLSRYIQ--PTPGPIETPEGVVVGRHQGVS 234 Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 YT+GQR+GL + G+P +VV D ++R+IV L + E+ W+ Sbjct: 235 FYTLGQRQGLEIGGRAGRSGKPWYVVGKDTPANRLIVAQGHDHPLLMSVGLEATELCWVA 294 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSD 371 +CF K R Q V+ D F++ + V GQ+ VFY + Sbjct: 295 GR----PPSTPLRCFAKTRYRQPSQSCVVEAITADCARTVFDQPQRAVVPGQSVVFYCDE 350 Query: 372 SNEARVLGGGIISGSKRSDAVE 393 +GGG+I + E Sbjct: 351 ----ECIGGGVIQQTFPWHTHE 368 >gi|206901317|ref|YP_002250407.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dictyoglomus thermophilum H-6-12] gi|206740420|gb|ACI19478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dictyoglomus thermophilum H-6-12] Length = 345 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 134/370 (36%), Positives = 205/370 (55%), Gaps = 27/370 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 ++V V MSGGVDSS A LLK++GY+VIG+T+ + S + DA ++ Sbjct: 2 PIKVAVGMSGGVDSSTTAYLLKKEGYEVIGLTMNIAYSDS-------------IKDAEKI 48 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +N+ H+ D + F +I F SY +G TP PC CNR +KF LL ++LGA+ Sbjct: 49 AKYLNIPHFYVDLRKEFEEQIIKYFIDSYKSGYTPNPCTFCNRIIKFGLLLKKAQELGAE 108 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 LATGHY+R V D+ K+ ++ R DL++DQSYFL TQ+Q+ FPLGD+ K Sbjct: 109 YLATGHYVRK---VWDEEKKVFLLKRAKDLKKDQSYFLAYLTQEQIEKSLFPLGDLTKNE 165 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA E+GL ++DK +SQDICF+ Y + R + +G I+ +G +G H+G+ Sbjct: 166 VRKLAEEIGLFVSDKEESQDICFLPDRDYRKFLSRYL--VEKKGKIITEDGVEVGYHDGV 223 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 ++TIGQRRGL VA+G+P++V + V+V RE + +Y + +N+ E Sbjct: 224 FSFTIGQRRGLRVALGKPVYVKKIIPEEGIVVVADREKIFSREVYAKNVNYPSGMPRE-- 281 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + IR + +P P ++ ++ +Y+ FE+ + + GQ V Y D VL Sbjct: 282 --KELEVKAMIRYNMEPQPALLKILSEKEIYLTFEEPQWAITPGQILVCYKDD----YVL 335 Query: 379 GGGIISGSKR 388 GG+I + Sbjct: 336 CGGVIEEKEN 345 >gi|114320607|ref|YP_742290.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alkalilimnicola ehrlichii MLHE-1] gi|122311715|sp|Q0A8N7|MNMA_ALHEH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|114227001|gb|ABI56800.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alkalilimnicola ehrlichii MLHE-1] Length = 366 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 117/377 (31%), Positives = 170/377 (45%), Gaps = 28/377 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +VVV +SGGVDS+V A L G+ V G+ ++ + C A +D+ +A+ Sbjct: 3 KTDKVVVGLSGGVDSAVAAMRLLEAGHHVEGLFMKNWEDDD---TLTHCAAEEDLAEAQA 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + + ++ R+R V Y AG TP P + CN+ +KF L LGA Sbjct: 60 VADHLGIRLHRANFAARYREQVFEVCLREYRAGRTPNPDILCNQRIKFRAFLDHALSLGA 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY VG+ G R + R D +DQSYFL+ Q QL FPL ++ K Sbjct: 120 SKVATGHYAG----VGEQG-GRFTLLRGEDPHKDQSYFLYTLGQAQLRHSLFPLSELPKP 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR A GL + DS ICF+ + + + R G + GQ++G H G Sbjct: 175 EVRRQAAAAGLPNHARRDSTGICFIGERDFRAFLSRYIQRS--PGPMETPEGQVVGEHQG 232 Query: 259 IINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT+GQRRGLG+ +V D + +IV L + E++W Sbjct: 233 LAFYTLGQRRGLGLGGLPDHDEGAWYVADKDMARNALIVVQGHAHPRLLSTALVADELSW 292 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASGQACVFY 368 + +C VK R Q P ++ + V V F+ + V GQ+ VFY Sbjct: 293 VAGA----PPTLPLRCTVKSRYRQQDQPCALEAGPSPTSVVVRFDTPQRAVTPGQSVVFY 348 Query: 369 TSDSNEARVLGGGIISG 385 LGGGII Sbjct: 349 QGRV----CLGGGIIQT 361 >gi|325281886|ref|YP_004254428.1| tRNA-specific 2-thiouridylase mnmA [Odoribacter splanchnicus DSM 20712] gi|324313695|gb|ADY34248.1| tRNA-specific 2-thiouridylase mnmA [Odoribacter splanchnicus DSM 20712] Length = 364 Score = 428 bits (1100), Expect = e-117, Method: Composition-based stats. Identities = 126/375 (33%), Positives = 207/375 (55%), Gaps = 19/375 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76 + RV++AMSGG+DS+V A LL GY+++GVT + ++ SR +++ CC+ +++A Sbjct: 2 EKKRVLMAMSGGIDSTVAAMLLLEQGYELVGVTYRTFDNISRGCMEKEKGCCSVDSLFEA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 +R+ + H++ D + F++ VI F Y G TP PCV CN T+K+ L+ ++ Sbjct: 62 KRMAQELGFEHHILDIRQEFKDTVITNFIGEYLQGRTPNPCVICNSTIKWGKLIETANEM 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 D +ATGHY R G RR + + DL +DQ+YFL+ TQ+ L FPLG++ Sbjct: 122 RCDYIATGHYARIGHQDG-----RRYLRKGADLSKDQTYFLWTLTQENLSRTLFPLGELT 176 Query: 197 KESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQI 252 K VR +A + G + ++ K +SQ+ICF+ Y + G+ V +G+ Sbjct: 177 KPEVRQIAFDHGYEKLSKKGESQEICFIPGNDYRTFLAEQVENYTEKYGPGNFVDTSGKR 236 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 LG H G NYTIGQR+GLG+A+G+P+FV+ + + V++G +E L+ + +EIN + Sbjct: 237 LGEHKGYPNYTIGQRKGLGIALGQPMFVIAIHPEDNTVVLGTKEELQGKSFFAKEINLMK 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + DG + KIR + + D+ + V F ++ + GQ+ VFY + Sbjct: 297 YA----KIPDGLEVTAKIRYRNEGKKASLYPEDNRLRVVFHETMDSITPGQSAVFYEGED 352 Query: 373 NEARVLGGGIISGSK 387 V+GGG+I G + Sbjct: 353 ----VVGGGVIEGKR 363 >gi|228473347|ref|ZP_04058101.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Capnocytophaga gingivalis ATCC 33624] gi|228275249|gb|EEK14047.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Capnocytophaga gingivalis ATCC 33624] Length = 397 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 122/404 (30%), Positives = 195/404 (48%), Gaps = 50/404 (12%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RVVV +SGGVDSSV A LL++ GY+VIG+ ++ ++ + C +D DA V Sbjct: 2 KRVVVGLSGGVDSSVAAYLLQKQGYEVIGLFMKNWHDDSVT-ISNECPWLEDSNDALMVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + D ++ ++ Y G TP P V CNR +KF+ L + LGAD Sbjct: 61 EKLGIPFQTVDMSVPYKQRIVDYMFREYERGRTPNPDVLCNREIKFATFLDLALSLGADY 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + DGK + D +DQSYFL +Q+QL FP+GD++K V Sbjct: 121 VATGHYCR-KEEIEVDGKPIYRLLAGKDTNKDQSYFLCQLSQEQLSRALFPIGDLQKNEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248 R +A+E+GL A+K DSQ +CFV + + + +++ EGDI+ + Sbjct: 180 RAIAKELGLVTAEKKDSQGLCFVGKVRLPEFLQQQL--SPKEGDIIQIPSTWAGYHNKQI 237 Query: 249 -----------------------NGQILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLD 284 +G+I+G+H G +TIGQR+GL EPLFV+ D Sbjct: 238 LRCFECYEDELKFLAEKYHYTPQDGKIVGKHEGAHFFTIGQRKGLHVGGTAEPLFVIDTD 297 Query: 285 KNSSRVIVG---PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339 + + VG L +++ +I+W+ L ++ V+IR Q Sbjct: 298 TEKNIIYVGEGNTHPGLLRSALFVKKEDIHWVRPDLAL-SLGQRMGFQVRIRYRQPLQKA 356 Query: 340 FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 + + G+Y+ F+ + + SGQ +Y + ++G G I Sbjct: 357 HLYLTNSGLYIHFDTPQSAITSGQFASWYLDE----ELIGSGEI 396 >gi|329942704|ref|ZP_08291483.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydophila psittaci Cal10] gi|313847883|emb|CBY16878.1| tRNA-methyltransferase [Chlamydophila psittaci RD1] gi|325507227|gb|ADZ18865.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydophila psittaci 6BC] gi|328814964|gb|EGF84953.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydophila psittaci Cal10] gi|328914545|gb|AEB55378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydophila psittaci 6BC] Length = 362 Score = 427 bits (1099), Expect = e-117, Method: Composition-based stats. Identities = 128/375 (34%), Positives = 184/375 (49%), Gaps = 28/375 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + VVVAMSGGVDSSVVA LLK+ Y V+G+ ++ + ++ G C +D D R Sbjct: 2 NKTVVVAMSGGVDSSVVAYLLKKMTSYRVLGIFMKNWEEEDSN---GLCSTAKDYEDVER 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + +++ +Y + +R V F Y+ G TP P V CNR +KF L +LG Sbjct: 59 VAEQLDIPYYTVSFAREYRERVFSRFLKEYSQGYTPNPDVLCNREIKFDLLQKKVVELGG 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY R + ++ + R D +DQSYFL T Q+ L ++ FPLGDM K Sbjct: 119 DFLATGHYCRLDVR-----RQGVELLRGKDPHKDQSYFLCGTRQESLKNVLFPLGDMTKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHN 257 VR +A + GL A K DS ICF+ + + +++ + EGDI+ + +I+G H Sbjct: 174 EVRAIAAQAGLATAQKRDSTGICFIGKRPFKSFLEQFVPNL--EGDIMDYDSQKIVGSHE 231 Query: 258 GIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313 G YTIGQRRGL + E P +VV D + V + L + +E+NW Sbjct: 232 GAHYYTIGQRRGLDIGGSEKPCYVVGKDMEKNIVYIVRGEDHPLLYQQELTAKELNWFV- 290 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + +C K+R + + D V V F + GQ FY + Sbjct: 291 -----SPESITRCSAKVRYRSEDEECEILHTGEQDKVRVRFASPVKAITPGQTIAFYDGE 345 Query: 372 SNEARVLGGGIISGS 386 R LGGG+I S Sbjct: 346 ----RCLGGGVIEVS 356 >gi|297181285|gb|ADI17477.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain-protein [uncultured beta proteobacterium HF0130_04F21] Length = 385 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 123/391 (31%), Positives = 188/391 (48%), Gaps = 32/391 (8%) Query: 8 RLN-SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 +LN L++ K +V+ MSGGVDSSV A LLK G+ V+G+ ++ + Sbjct: 13 KLNIKLEIIKMITKKHIVIGMSGGVDSSVAAWLLKSQGHKVVGIFMKNW---DDDDTDTY 69 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 C + QD DA + I + + +R V F Y+ G TP P V CN +KF Sbjct: 70 CTSKQDFLDAAAASEIIGIEFDAVSFSNEYRKKVFNDFLHEYSLGRTPNPDVFCNSEIKF 129 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L ++ LGAD++ATGHY ++ + + + D +DQSYFL TQ+QL Sbjct: 130 KSFLHHSQNLGADLIATGHYAKTIKNI----NGEFELHKGKDQNKDQSYFLHRLTQKQLR 185 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 FPLG K+ VR LA+E+GL A+K DS ICF+ + + + + + G + Sbjct: 186 YTTFPLGQYYKKDVRKLAQEIGLPNANKRDSTGICFIGERPFKVFLSKYLK--TMSGPVC 243 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAM----------GEPLFVVYLDKNSSRVIVGPRE 296 +G+I+G+H+G+ YTIGQR+GLG+ P FVV +K +R+IV Sbjct: 244 TTDGKIIGKHDGLSFYTIGQRKGLGIGGIKKSNDFEKTAAPWFVVAKEKKDNRLIVAQGH 303 Query: 297 S---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFE 353 L + +W+ + ++ VKIR Q + + ++ F+ Sbjct: 304 DNPFLMSTSLSAINPSWVKGKAPKFEEME-----VKIRYRQKTFSCILSVRSEKFFLKFD 358 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + GV GQ+ V Y + LGGGII Sbjct: 359 SPQRGVTPGQSAVLYKGE----ECLGGGIIE 385 >gi|28210754|ref|NP_781698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium tetani E88] gi|75542643|sp|Q896F5|MNMA1_CLOTE RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 gi|28203192|gb|AAO35635.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Clostridium tetani E88] Length = 362 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 132/366 (36%), Positives = 202/366 (55%), Gaps = 18/366 (4%) Query: 26 AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDARRVCDTIN 84 MSGGVDSSV A LLK GYDVIG+T++++ + GS +D+ A+ VCD + Sbjct: 12 GMSGGVDSSVTAYLLKEQGYDVIGMTMKVF---PGNYHDGSKEKIEDIMKSAKEVCDFLE 68 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + D E F V PF Y G TP PCV CN+ +KF L+ +LGAD +ATG Sbjct: 69 IPFVEVDLIEEFNKKVATPFMQDYIEGRTPNPCVYCNKHIKFDAFLNKAIELGADYIATG 128 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY + R ++ R D +DQ+Y L+ Q QL + P GD KE +R++A Sbjct: 129 HYANII-----EKDGRTLIYRAEDENKDQTYMLYNLKQHQLKHILMPCGDYNKEQIREIA 183 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI 264 +++GL I +K DS++ICF+ + ++ EG+ V G++LGRH GIINYTI Sbjct: 184 KKIGLKIHNKKDSEEICFIPDDDHGRYIRENCKKKIQEGNFVDEKGKVLGRHKGIINYTI 243 Query: 265 GQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGF 324 GQR+GLG+A+G+P +V+ + ++V++G E + + + +++N++ D + + Sbjct: 244 GQRKGLGIALGKPAYVIDIIPEKNQVVLGEEEKIFNNILIAKDVNFI----PFDELKEKI 299 Query: 325 KCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 K KIR S ++ + + V V F+K + + GQ+ VFY E +LGGGII Sbjct: 300 KLEAKIRYSAKGEIAEIEPLENNRVKVTFDKKQRAITKGQSVVFY----IENLLLGGGII 355 Query: 384 SGSKRS 389 + S Sbjct: 356 ESVESS 361 >gi|313896558|ref|ZP_07830107.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Selenomonas sp. oral taxon 137 str. F0430] gi|312974743|gb|EFR40209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Selenomonas sp. oral taxon 137 str. F0430] Length = 365 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 144/375 (38%), Positives = 206/375 (54%), Gaps = 16/375 (4%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQ 71 +++ RVVVAMSGGVDSS+ AALL GYDV+GVT++L N + + SCC+ Sbjct: 1 MERIMGKERVVVAMSGGVDSSLAAALLLAQGYDVVGVTMRLSNENRDVDPENDRSCCSLS 60 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 V DARRV D + + HYV D+ F+ +VI F Y G TP PC+ CNR +KF LL Sbjct: 61 SVDDARRVADVLGIRHYVMDFTMPFQTSVIDYFLDEYLLGRTPNPCIACNRYIKFEGLLH 120 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + +LGA +ATGHY R D + + D+++DQSY L+ Q+ L + P Sbjct: 121 KSAELGASHVATGHYARI-----DFDGGMYRLRKGKDVDKDQSYVLYHLNQETLAHVLLP 175 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 LGD K + R +A E L +A K +SQ+ICFV + Y +K G ++ GDIV G Sbjct: 176 LGDFDKGTTRRMAEEYRLPVAHKPESQEICFVPRDDYKSYMKEKRPGRSVPGDIVDRAGN 235 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 +LG H+GI YTIGQRRGLG+A +PL+V LD + V+VG E + + +++W Sbjct: 236 VLGHHDGISFYTIGQRRGLGIAAPQPLYVTALDAVHNHVVVGTAEEVFARELTASDLSWT 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTS 370 +++ + KIR + + + + + V F + + V GQ+ VFY Sbjct: 296 ----MWESLDEVCMAHAKIRYGKREAEARIMPLDGNRLRVRFTEPQRAVTPGQSIVFYEG 351 Query: 371 DSNEARVLGGGIISG 385 D VLGGG+I Sbjct: 352 DV----VLGGGVIDA 362 >gi|325473540|gb|EGC76733.1| tRNA-specific 2-thiouridylase mnmA [Treponema denticola F0402] Length = 383 Score = 426 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 132/358 (36%), Positives = 187/358 (52%), Gaps = 16/358 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+V+V +SGGVDS+V A LL GYDV GVT+QL ++ D+ DA++V Sbjct: 18 MKVLVGLSGGVDSAVAAKLLIDQGYDVTGVTMQLLPKLSGIYKE----QTDDIEDAKKVA 73 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + H V+D E F+ +I F Y G TP PC CN +KF L + G D Sbjct: 74 AKLGIKHIVYDMRETFKAEIIDYFVEEYKQGRTPNPCFICNSKIKFGLFLEQALKDGFDK 133 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + +G+ R ++ + D+++DQSYFL TQ+QL FPLGD K+ V Sbjct: 134 IATGHYAKIEK-TEIEGEERFLLRQAEDVQKDQSYFLALLTQEQLSHSIFPLGDFTKKKV 192 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A + DSQDICFV Y V+ + AG EG + G +GRH G+ Sbjct: 193 RSIAEDAGLINAHRPDSQDICFVPDDDYTRVINALAAGSFKEGKFIDTMGNEIGRHKGLQ 252 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQRRGL +AMG P++VV D ++ V VG E L + ++N + + + Sbjct: 253 YYTIGQRRGLAIAMGYPVYVVKKDAKANTVTVGKDEELFAESLIASDVNIIS----KKTI 308 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDD-------GVYVDFEKSEVGVASGQACVFYTSD 371 + +K R Q + + V+F + E VA GQA VFY+ D Sbjct: 309 DEEIDIEIKTRYRQQKKKAKLIPLKNEEFKPTGKFKVEFIEPEKAVAEGQAAVFYSGD 366 >gi|320528367|ref|ZP_08029529.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Solobacterium moorei F0204] gi|320131281|gb|EFW23849.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Solobacterium moorei F0204] Length = 382 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 119/382 (31%), Positives = 183/382 (47%), Gaps = 29/382 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73 +V+V +SGGVDS+V A LL++ GYDV ++ ++S G+ C D Sbjct: 2 KKVLVGLSGGVDSAVAAYLLQQQGYDVTCAFMRNWDSVANEDFSGNPTLYDPVCPQEADY 61 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA V + + D+ + + + V F Y G TP P + CNR +KF + Sbjct: 62 KDAADVAAKLGLELLRIDFIKEYWDDVFQTFIDEYKLGRTPNPDILCNRYIKFDSFMKFA 121 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 ++ G D++ATGHY R +G++G ++C+ +D +DQSYFL ++ L + FPLG Sbjct: 122 KEKGFDIVATGHYAR----LGEEGN-HHVLCKAVDHNKDQSYFLTEIRREVLEHVLFPLG 176 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252 +++K VR +A E+GL IA K DS ICF+ + ++ + + GDI+ + Q Sbjct: 177 EIEKPEVRRIAEELGLSIAKKKDSTGICFIGERRFREFLGNYLP--MKSGDIIDVTTKQK 234 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREIN 309 +G H G++ YTIGQR+GL + P FVV D + + V L + +N Sbjct: 235 VGIHQGVMYYTIGQRKGLDIGGIGPFFVVGKDVYKNELYVVDANHQDLLYATSCLVTGVN 294 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 WL D +C K R Q V + N+DG + F + + GQ VFY Sbjct: 295 WLADRTL------PLQCHAKFRYRQADNDVELVLNEDGTLTALFPEGIRSITPGQEAVFY 348 Query: 369 TSDSNEARVLGGGIISGSKRSD 390 D A GG I + Sbjct: 349 DGDVMFA----GGKIEKVYKDG 366 >gi|294793679|ref|ZP_06758816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Veillonella sp. 3_1_44] gi|294455249|gb|EFG23621.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Veillonella sp. 3_1_44] Length = 363 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 135/364 (37%), Positives = 201/364 (55%), Gaps = 18/364 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + VAMSGGVDSS+ AA+L + GY V G+TL L+ S V DA+++CD Sbjct: 15 IAVAMSGGVDSSLTAAMLLKQGYKVFGITLWLWVSGTPYDE-----VPLAVTDAKKMCDF 69 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + H+V D + F V+ F YA G TP PCV CN+ +KF +L+ +LGA + Sbjct: 70 LGIEHHVIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATHMV 129 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ + + +D +DQSY ++ Q+ L L FPLG K R Sbjct: 130 TGHYAQVNY---NEKTGLYELHKGVDPTKDQSYVMYNMNQRILSHLMFPLGGQCKTETRK 186 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA E L +A K DS DICF+ G Y +V G G+IV +G++LG+HNG+ NY Sbjct: 187 LAAEYDLPVAKKPDSVDICFLPHGNYQKLVVEEMKGKPESGNIVTEDGEVLGKHNGLFNY 246 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A PL+V+ + + + VIVGP E L +R+ + N+L D + ++ + Sbjct: 247 TIGQRKGLGIAYKHPLYVIGFNGDRNEVIVGPNEHLFTNRMICKFYNFLDDTIHKELKAE 306 Query: 323 GFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 G KIR + +P P + +DD + V FE+ + + GQ+ FY ++LGG Sbjct: 307 G-----KIRYAANPSPCTARILDDDTMEVIFEEPQRAITPGQSVAFYNG----TQLLGGA 357 Query: 382 IISG 385 +I Sbjct: 358 VIDR 361 >gi|241116858|ref|XP_002401642.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ixodes scapularis] gi|215493186|gb|EEC02827.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ixodes scapularis] Length = 343 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 171/354 (48%), Positives = 227/354 (64%), Gaps = 13/354 (3%) Query: 36 VAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEER 95 VAA+L G++VIG+TLQLY+ A +K +CCAGQD+YDA+ V + + + HYV YE + Sbjct: 2 VAAMLHEQGHNVIGITLQLYDHGMAVGKKNACCAGQDIYDAKMVANKLGIPHYVLGYESK 61 Query: 96 FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGD 155 F+ +VI F SY GETPLPCV CN++VKF DL+ R+LGAD LATGHY+R GD Sbjct: 62 FKESVIDNFVDSYLQGETPLPCVQCNKSVKFRDLIKTARELGADKLATGHYVRK--INGD 119 Query: 156 DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKS 215 +G + +D +DQSYFLF TT++QL L FPLG + K+ R LA + GL++ADK Sbjct: 120 NGAE---LHTGLDPAKDQSYFLFTTTKEQLEYLSFPLGGLTKDETRKLASKFGLEVADKP 176 Query: 216 DSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMG 275 DSQDICFV G Y V+ +I G + G IVH+NG LG H+GIINYTIGQRRGLG+A Sbjct: 177 DSQDICFVPDGNYKSVINKIRPGSSESGKIVHVNGFELGEHSGIINYTIGQRRGLGIAYN 236 Query: 276 EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQD 335 +PL+VV +D + V VGP +L V ++++NWL D E + + VKIRS++ Sbjct: 237 KPLYVVKIDPKDNIVYVGPESALHVQEFIIKDVNWLAD---ETKDNEKLEVAVKIRSTRP 293 Query: 336 PVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388 P + + DD + + F E VA GQACV Y + RVLGGG I+ R Sbjct: 294 PRLAEISKLGDDKMKIKFLSEEKAVAPGQACVIYAGE----RVLGGGWITRDMR 343 >gi|149185324|ref|ZP_01863641.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erythrobacter sp. SD-21] gi|148831435|gb|EDL49869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erythrobacter sp. SD-21] Length = 383 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 182/394 (46%), Positives = 237/394 (60%), Gaps = 21/394 (5%) Query: 2 VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61 ++ A DL+K + R+VVAMSGGVDSSVVAAL + G +VIG+TLQLY+ A+ Sbjct: 6 LLEPALAAGLFDLEKPASESRIVVAMSGGVDSSVVAALAAKSGAEVIGITLQLYDYGAAT 65 Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 RKG+CCAG D+ DAR V D + ++HYV D+E FR V+ FA Y AG TP+PC+ CN Sbjct: 66 GRKGACCAGDDIADARAVADRLGIAHYVSDHESAFREEVVETFADEYLAGRTPVPCIRCN 125 Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181 KF+DL ++ R+LGAD LATGHY++ + G + R D RDQSYFL+ATT Sbjct: 126 MGPKFTDLFAMARELGADCLATGHYVQRLM-----GPAGPELHRANDPARDQSYFLYATT 180 Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 + QL LRFPLG + K VR+LA GL A K DSQDICFV G Y +VK++ A Sbjct: 181 EDQLNFLRFPLGGLPKAQVRELAEAAGLRNAAKPDSQDICFVPDGDYAKIVKKMRPEGAA 240 Query: 242 EGDIVH-LNGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLE 299 G IVH G+ LG H G+++YT+GQRRGL + EPL+VV +D + ++V VGP+ L Sbjct: 241 PGAIVHAATGEELGTHKGVVHYTVGQRRGLEIGGQPEPLYVVGIDADQAQVKVGPKRMLA 300 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGV--YVDFEKSE 356 V +L E N +G + K+RS PVP+ + +G + FE E Sbjct: 301 VSAAHLVETNRIG-------PLPDVPLTAKVRSLAKPVPITLDGPLGEGAATTLRFETPE 353 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIISGSKRSD 390 GVA GQA V Y D RVLGGG I + R D Sbjct: 354 FGVAPGQAAVIYAGD----RVLGGGWIDSTTRCD 383 >gi|158338655|ref|YP_001519832.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acaryochloris marina MBIC11017] gi|205810972|sp|B0CE39|MNMA_ACAM1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|158308896|gb|ABW30513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acaryochloris marina MBIC11017] Length = 355 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 141/372 (37%), Positives = 202/372 (54%), Gaps = 27/372 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VVV +SGGVDSSV AA LK GY+VIG+TL L KG CC+ + DA ++C Sbjct: 2 KKVVVGLSGGVDSSVAAASLKEKGYEVIGLTLWLMQ------GKGQCCS-DGLVDAAQLC 54 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGAD 139 + +++ H+V D + F N +I Y G TPLPC CN+TVKF +L+ R +L D Sbjct: 55 EDLDIPHHVVDSRDLFSNNIIDYLVEGYQQGITPLPCSQCNKTVKFGPMLNYARHELDTD 114 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + ++R + R +D +DQSYFL+ Q L FPLGD K Sbjct: 115 TIATGHYARIAYS---EKEKRYQLLRAVDRNKDQSYFLYDLDQDLLSGTVFPLGDHTKTE 171 Query: 200 VRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R +A ++ L A+K +SQD+C ++ G + + G+IV G ILG H G Sbjct: 172 TRRMATQLDLHTAEKPESQDLCLIEAHGSMQTFLDQYIE--THPGEIVDQEGNILGHHQG 229 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 + ++TIGQRRG+GVA PL+VV LD +RVIVG RE+ ++ +NW+ ++ Sbjct: 230 VHHFTIGQRRGIGVAAPHPLYVVDLDPGKNRVIVGDRETALKTECMVKRVNWVSIAPPQN 289 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRND-----DGVYVDFEKSEVGVASGQACVFYTSDSN 373 + V++R P V + D V + FE + G+A GQA V+Y + Sbjct: 290 PI----HAEVQVRYRSKPTGVTIIPLDAEAPGGRVKLVFEDPQFGIAPGQAAVWYDQEI- 344 Query: 374 EARVLGGGIISG 385 +LGGGII Sbjct: 345 ---LLGGGIIEA 353 >gi|205814682|sp|Q11UP4|MNMA_CYTH3 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 368 Score = 426 bits (1096), Expect = e-117, Method: Composition-based stats. Identities = 133/378 (35%), Positives = 206/378 (54%), Gaps = 18/378 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDA 76 K RV+VAMSGG+DSSV A +L GY+VIG+T++ ++ SK++ CC+ + DA Sbjct: 3 KKGRVLVAMSGGIDSSVAAVMLHEQGYEVIGMTMKTWDYANLGGSKKETGCCSLDSINDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + ++ HY+ D E F + VI F Y G TP PCV CN +K+ LL ++ Sbjct: 63 RNIAVSLGFPHYIVDIREEFGDYVINHFNKEYLDGRTPNPCVLCNTHIKWDSLLRRADKM 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 D +ATGHY + R R ++ + +D +DQSY L+ +QQ L FPLG + Sbjct: 123 DCDFIATGHYAQVRSE-----NNRFVISKGLDENKDQSYALWGISQQSLSRTMFPLGHLH 177 Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252 K +R +A E G D+ +KS+S +ICFV Y +KR N G+ E G+ V +G + Sbjct: 178 KTDIRAMAAERGFMDLVNKSESYEICFVPDNDYRGFLKRRNPGLEEEVRGGEFVMEDGTV 237 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G+H G YTIGQR+GLG+ +G P+FV + K ++RV++G E L + +++ ++ + Sbjct: 238 VGKHEGYPFYTIGQRKGLGITLGYPVFVTEIQKENNRVVLGREEGLNRNGMWVDQL--IM 295 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + K+R + D +++ D + V F + +A GQA VFY + Sbjct: 296 SKYENLKGIQKQSIT-KVRYNDDGTSSTIEQVGDEMRVLFHEHVKAIAPGQAAVFYEGND 354 Query: 373 NEARVLGGGIISGSKRSD 390 V+GGG I S + D Sbjct: 355 ----VIGGGWIKSSFKQD 368 >gi|294791818|ref|ZP_06756966.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Veillonella sp. 6_1_27] gi|294457048|gb|EFG25410.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Veillonella sp. 6_1_27] Length = 363 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 135/363 (37%), Positives = 201/363 (55%), Gaps = 18/363 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + VAMSGGVDSS+ AA+L + GY V G+TL L+ S V DA+++CD Sbjct: 15 IAVAMSGGVDSSLTAAMLLKQGYKVFGITLWLWVSGTPYDE-----VPLAVTDAKKMCDF 69 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + H+V D + F V+ F YA G TP PCV CN+ +KF +L+ +LGA + Sbjct: 70 LGIEHHVIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATHMV 129 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ + + +D +DQSY ++ Q+ L L FPLG K R Sbjct: 130 TGHYAQVNY---NEKTGLYELHKGVDPTKDQSYVMYNMNQRILSHLMFPLGGQCKTETRK 186 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA E L +A K DS DICF+ G Y +V G G+IV +G++LG+HNG+ NY Sbjct: 187 LAAEYDLPVAKKPDSVDICFLPHGNYQKLVVEEMKGKPESGNIVTEDGEVLGKHNGLFNY 246 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A PL+V+ + + + VIVGP E L +R+ + N+L D + ++ + Sbjct: 247 TIGQRKGLGIAYKHPLYVIGFNGDRNEVIVGPNEHLFTNRMICKFYNFLDDTIHKELKAE 306 Query: 323 GFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 G KIR + +P P + +DD + V FE+ + + GQ+ FY ++LGG Sbjct: 307 G-----KIRYAANPSPCTARILDDDTMEVIFEEPQRAITPGQSVAFYNG----TQLLGGA 357 Query: 382 IIS 384 +I Sbjct: 358 VID 360 >gi|320529055|ref|ZP_08030147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Selenomonas artemidis F0399] gi|320138685|gb|EFW30575.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Selenomonas artemidis F0399] Length = 361 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 144/367 (39%), Positives = 203/367 (55%), Gaps = 16/367 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRV 79 RVVVAMSGGVDSS+ AALL GYDV+GVT++L N + + SCC+ V DARRV Sbjct: 5 RVVVAMSGGVDSSLAAALLLAQGYDVVGVTMRLSNENRDVDPENDRSCCSLSSVDDARRV 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + HYV D+ F+ +VI F Y G TP PC+ CNR +KF LL + +LGA Sbjct: 65 ADVLGIRHYVMDFTMPFQTSVIDYFLDEYLLGRTPNPCIACNRYIKFEGLLHKSAELGAS 124 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R D + + D+++DQSY L+ Q+ L + PLGD K + Sbjct: 125 HVATGHYARI-----DFDGGMYRLRKGKDVDKDQSYVLYHLNQETLAHVLLPLGDFDKGT 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R +A E L +A K +SQ+ICFV + Y +K G ++ GDIV G +LG H+GI Sbjct: 180 TRRMAEEYRLPVAHKPESQEICFVPRDDYKSYMKEKRPGRSVPGDIVDRAGNVLGHHDGI 239 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YTIGQRRGLG+A +PL+V LD + V+VG E + + +++W ++ Sbjct: 240 SFYTIGQRRGLGIAAPQPLYVTALDAVHNHVVVGTAEEVFARELTASDLSWT----MWES 295 Query: 320 VVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + + KIR + + + + + V F + + V GQ+ VFY D VL Sbjct: 296 LDEVRMAHAKIRYGKREAEARIMPLDGNRLRVRFTEPQRAVTPGQSIVFYEGDV----VL 351 Query: 379 GGGIISG 385 GGG+I Sbjct: 352 GGGVIDA 358 >gi|157736746|ref|YP_001489429.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arcobacter butzleri RM4018] gi|205810440|sp|A8ES36|MNMA2_ARCB4 RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|157698600|gb|ABV66760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arcobacter butzleri RM4018] Length = 367 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 124/381 (32%), Positives = 199/381 (52%), Gaps = 32/381 (8%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 K+ ++VV MSGGVDSSV A LLK+ GYDV+G+ ++ + C + DA+ Sbjct: 2 NKNKKIVVGMSGGVDSSVTALLLKQQGYDVVGLFMRNWEYGIKGS---QCPNRIEFEDAK 58 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 +V I + D+ + +R+ V F G TP P + CN+ +KF+ L+ + +G Sbjct: 59 KVGALIGIEVRGKDFVKEYRDRVFDVFLEGLKQGLTPNPDILCNKEIKFNVFLNEAKSMG 118 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD++ATGHY + Y K ++ P D +DQSYFL A + +QL FPLGD+ K Sbjct: 119 ADMIATGHYAKIAKY-----KDHFVLDTPKDNTKDQSYFLHALSSEQLSHAMFPLGDLTK 173 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + VR++AR L ++DK DS ICF+ K+ + + + A+ GDI+ NG+++G+H Sbjct: 174 KEVREIARAHNLPVSDKKDSTGICFIGNQKFDEFITQHLQ--AIPGDILDENGKVIGKHK 231 Query: 258 GIINYTIGQRRGLGVA----------MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304 G++ YT+GQR+G+G+ +P FV D ++ + + L + Sbjct: 232 GLVCYTLGQRKGIGLGGIKGNESENNTHKPWFVASKDVVNNTLTIVQDTNHPLLMSKTVE 291 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQ 363 ++W+ E+A G K ++R Q V+ N++ V V+F+ + V GQ Sbjct: 292 ASHMHWV----LEEAPKVGDKLMAQVRYRQQKQACTVVEANEEKVVVEFDNPQRAVTLGQ 347 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + V Y+ D LGGG IS Sbjct: 348 SLVLYSGD----YCLGGGFIS 364 >gi|300868100|ref|ZP_07112736.1| tRNA-specific 2-thiouridylase mnmA [Oscillatoria sp. PCC 6506] gi|300333898|emb|CBN57914.1| tRNA-specific 2-thiouridylase mnmA [Oscillatoria sp. PCC 6506] Length = 352 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 148/367 (40%), Positives = 210/367 (57%), Gaps = 23/367 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++VV +SGGVDSS AA+L GY+V+G+TL L K KG CC+ V DA ++C+ Sbjct: 3 KIVVGLSGGVDSSTAAAILHHQGYEVVGLTLWLM------KGKGQCCSEGMV-DAAQICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + H + D + F+ +++ Y AG TPLPC CNRTVKF +L R+ LG + Sbjct: 56 QLGIPHEIVDSRDLFQASIVDYLVEGYGAGITPLPCSQCNRTVKFGPMLRYAREKLGIEK 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + D R + R +D +DQSYFL+ TQ+ L FPLGD+ K Sbjct: 116 IATGHYAQISYDGSVD---RYQLRRAVDSTKDQSYFLYDLTQEMLAGSVFPLGDIAKTET 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R +A E GL ADK++SQD+C V+ G + + A L+GDIV +G++LG+H+GI Sbjct: 173 RRIAAEFGLKTADKAESQDLCLVESNGSMRAFLDKYIA--PLKGDIVDKDGRVLGQHDGI 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQR+GLG+A EPL+V+ LD +RVIVG R S + + +NW+ Sbjct: 231 QHYTIGQRKGLGIAWAEPLYVIGLDVARNRVIVGDRASAAQNECIVNRVNWVSIA----E 286 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + V+IR PVPV V D V + F++ + G+ GQ V+Y D +L Sbjct: 287 PGAPIRAEVQIRYRSHPVPVSVIPLPDARVKLIFDEPQFGITPGQGAVWYDGDI----LL 342 Query: 379 GGGIISG 385 GGGII Sbjct: 343 GGGIIES 349 >gi|119486285|ref|ZP_01620344.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lyngbya sp. PCC 8106] gi|119456498|gb|EAW37628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lyngbya sp. PCC 8106] Length = 352 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 145/371 (39%), Positives = 206/371 (55%), Gaps = 26/371 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VVV +SGGVDSS AA+L Y+V+G+TL L K KG CC+ V DA +C Sbjct: 2 KKVVVGLSGGVDSSAAAAILHHQDYEVVGLTLWLM------KGKGQCCSEGMV-DAAFIC 54 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139 + + V H++ D E F+ ++ Y+AG TPLPC CN+TVKF +L ++ LG D Sbjct: 55 EQLGVPHHIVDSRELFQTHIVDYLVEGYSAGITPLPCSQCNKTVKFGPMLRHAKEELGID 114 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ATGHY R R D+ R + R +D +DQSYFL+ TQ L + FPLG++ K Sbjct: 115 LIATGHYARIRY---DEQNNRYQLLRAVDKSKDQSYFLYDLTQDLLAGVVFPLGEVLKTE 171 Query: 200 VRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R +A + L ADK +SQD+C V+ G + + G GDIV NG++LG+H G Sbjct: 172 TRRIAAQYNLKTADKPESQDLCLVEANGSMQAFLDKYITG--KTGDIVDENGKVLGQHEG 229 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I +YTIGQR+GLG+A PL+V+ +D + VIVG RE+ ++ +NW+ Sbjct: 230 IHHYTIGQRKGLGIAAPNPLYVIGIDAGRNLVIVGDRENATQTECIIKRVNWVSIA---- 285 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR----NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 + V+IR P PV V D+ V + F++ G+ GQA V+Y + Sbjct: 286 PPTSPIRAEVQIRYRTKPQPVTVVPLNSAEDEQVKLIFDEPIFGITPGQAAVWYDGEI-- 343 Query: 375 ARVLGGGIISG 385 VLGGGII Sbjct: 344 --VLGGGIICS 352 >gi|118595168|ref|ZP_01552515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylophilales bacterium HTCC2181] gi|118440946|gb|EAV47573.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Methylophilales bacterium HTCC2181] Length = 369 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 121/374 (32%), Positives = 183/374 (48%), Gaps = 28/374 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 +VV +SGGVDS+V A LLK GYDV + ++ + + C + QD+ DA V + Sbjct: 6 IVVGLSGGVDSAVTAWLLKDQGYDVTALFMKNWEDDDEDE---YCSSKQDLLDAIAVAEK 62 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 I V V ++ + ++ V F G TP P + CN +KF L+ LGAD +A Sbjct: 63 IGVDIEVVNFAKEYKEKVFSLFIDGLKTGITPNPDILCNSEIKFDAFLNHALALGADKIA 122 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + G + + D +DQSYFL Q QL FPLG + K+ VR+ Sbjct: 123 TGHYAKVMERDG-----LFYLLKGDDGSKDQSYFLHRLNQDQLSKSVFPLGGLLKKDVRE 177 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIIN 261 +AR+ L I D+ DS ICF+ + + + + G IV + G++LG H+G+ Sbjct: 178 IARKNSLHIHDRKDSTGICFIGERPFAEFIGGYINKD--PGSIVSADGGEVLGTHDGLNF 235 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 YTIGQR+GL + G+P FV+ D ++++VG L + +E++W+G+ Sbjct: 236 YTIGQRQGLKIGGVQKGNGKPWFVISKDFKKNQLVVGQGHDHPLLFNDGLIAKEMHWIGE 295 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDS 372 L + V K R Q P + +D V F + + V GQ+ V Y S+ Sbjct: 296 KLPRENWV----YAAKTRYRQPDAPCEIDDINDVSATVLFGQKQWAVTPGQSIVIYESNV 351 Query: 373 NEARVLGGGIISGS 386 LGGG I + Sbjct: 352 ----CLGGGFIEQA 361 >gi|282896191|ref|ZP_06304214.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Raphidiopsis brookii D9] gi|281198880|gb|EFA73758.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Raphidiopsis brookii D9] Length = 350 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 143/367 (38%), Positives = 205/367 (55%), Gaps = 23/367 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VVV +SGGVDSSV AA+L GYDVIG+TL L K KG CC+ V DA +C Sbjct: 3 KKVVVGLSGGVDSSVAAAILHNQGYDVIGLTLWLM------KGKGQCCSEGMV-DAATIC 55 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGAD 139 +++ H + D + F+ ++ S Y+AG TPLPC CNRTVKF +L + +L +D Sbjct: 56 QQLDIPHEIVDMRDVFQTNIVDYLVSGYSAGITPLPCSQCNRTVKFGPMLQYAKDKLQSD 115 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R D R + R D +DQSYFL+ +Q+ L FPLG++ K Sbjct: 116 TIATGHYARIAY---DHRTERYQLLRAFDRNKDQSYFLYDLSQELLAGTIFPLGELNKND 172 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R +A E GL ADK +SQD+C V+ G + + GDIV +G++LG+H+G Sbjct: 173 TRKIASEYGLKTADKPESQDLCLVESNGSMRAFLDKYL--SPKPGDIVDSDGKVLGKHDG 230 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 + +YTIGQR+GLG+A EPL+V+ LD ++ V+VG R + +NW+ Sbjct: 231 VHHYTIGQRKGLGIAAAEPLYVIKLDTVNNLVVVGDRTKGTEKECTVERVNWVSMVEPRG 290 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + + V+IR PV + + D V + F++ + + GQA V+Y D +V Sbjct: 291 TI----RGEVQIRYRSQPVLATIIPGEKDCVQMVFDEPQFSITPGQAAVWYEGD----KV 342 Query: 378 LGGGIIS 384 LGGGII Sbjct: 343 LGGGIIK 349 >gi|296282975|ref|ZP_06860973.1| tRNA-specific 2-thiouridylase MnmA [Citromicrobium bathyomarinum JL354] Length = 384 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 185/385 (48%), Positives = 236/385 (61%), Gaps = 21/385 (5%) Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69 N DL + + R+VVAMSGGVDSSVVAAL + G DV+G+TLQLY+ A+ RKG+CCA Sbjct: 15 NLFDLPRPASECRIVVAMSGGVDSSVVAALAAKTGADVVGITLQLYDYGAATGRKGACCA 74 Query: 70 GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 G D+ DAR V D + ++HYVFD+E FR +V+ FA Y AG TP+PC+ CN KF+DL Sbjct: 75 GDDIADARAVADRLGIAHYVFDHESAFRESVVEQFADDYLAGRTPVPCIRCNMGPKFTDL 134 Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 L++ R+L AD LATGHY+R + G + R D RDQSYFLFATTQ QL LR Sbjct: 135 LTMARELDADCLATGHYVRRVM-----GAGGSELHRAEDAGRDQSYFLFATTQPQLDFLR 189 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-L 248 FPLG M K VR LA E GL A K DSQDICFV G Y +VK++ A G IVH Sbjct: 190 FPLGGMPKSQVRALAEEAGLRNAAKPDSQDICFVPDGNYAGIVKKLRPEGATPGAIVHAR 249 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 G+ LG H G++++T+GQRRGL + EPL+VV LD NS+ V VGP+ L L + Sbjct: 250 TGETLGEHAGVVHFTVGQRRGLEIGGQPEPLYVVELDANSAEVRVGPKAMLATASAQLVD 309 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDG--VYVDFEKSEVGVASGQA 364 N +G + K+RS PVPV ++ + +G V + FE E GVA GQA Sbjct: 310 TNRIG-------PLPDLPLTAKVRSLAKPVPVTLEGSLGEGSPVTITFETPEYGVAPGQA 362 Query: 365 CVFYTSDSNEARVLGGGIISGSKRS 389 V Y D R +GGG I ++ + Sbjct: 363 AVIYAGD----RAVGGGWIDSTRPA 383 >gi|15618353|ref|NP_224638.1| tRNA-specific 2-thiouridylase MnmA [Chlamydophila pneumoniae CWL029] gi|15835971|ref|NP_300495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydophila pneumoniae J138] gi|16752601|ref|NP_444864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydophila pneumoniae AR39] gi|33241787|ref|NP_876728.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydophila pneumoniae TW-183] gi|6647887|sp|Q9Z8A5|MNMA_CHLPN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|4376720|gb|AAD18582.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae CWL029] gi|7189243|gb|AAF38171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydophila pneumoniae AR39] gi|8978810|dbj|BAA98646.1| PP-loop superfamily ATPase [Chlamydophila pneumoniae J138] gi|33236296|gb|AAP98385.1| putative p-loop ATPase [Chlamydophila pneumoniae TW-183] Length = 361 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 120/372 (32%), Positives = 181/372 (48%), Gaps = 27/372 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 V+VAMSGGVDSSVVA L K+ Y VIG+ ++ + G C + +D D R Sbjct: 2 QQTVIVAMSGGVDSSVVAYLFKKFTNYKVIGLFMKNWEEDSEG---GLCSSTKDYEDVER 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC +++ +Y + + +R V F Y+ G TP P + CNR +KF L ++LG Sbjct: 59 VCLQLDIPYYTVSFAKEYRERVFARFLKEYSLGYTPNPDILCNREIKFDLLQKKVQELGG 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY R + + + R D ++DQSYFL T + L ++ FPLG+M K Sbjct: 119 DYLATGHYCRLNTELQE-----TQLLRGCDPQKDQSYFLSGTPKSALHNVLFPLGEMNKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHN 257 VR +A + L A+K DS ICF+ + + + +++ G+++ + +I+G+H Sbjct: 174 EVRAIAAQAALPTAEKKDSTGICFIGKRPFKEFLEKFLPN--KTGNVIDWDTKEIVGQHQ 231 Query: 258 GIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313 G YTIGQRRGL + E P +VV + + + + L + + RE+NW Sbjct: 232 GAHYYTIGQRRGLDLGGSEKPCYVVGKNIEENSIYIVRGEDHPQLYLRELTARELNWFT- 290 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 G C K+R + + D V V F + V GQ FY D+ Sbjct: 291 -----PPKSGCHCSAKVRYRSPDEACTIDYSSGDEVKVRFSQPVKAVTPGQTIAFYQGDT 345 Query: 373 NEARVLGGGIIS 384 LG G+I Sbjct: 346 ----CLGSGVID 353 >gi|262066104|ref|ZP_06025716.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium periodonticum ATCC 33693] gi|291380199|gb|EFE87717.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium periodonticum ATCC 33693] Length = 362 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 137/376 (36%), Positives = 202/376 (53%), Gaps = 30/376 (7%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++ D N K ++V VAMSGGVDSS VA LLK+ GYD+ GVT++ + + Sbjct: 15 IEFDSNKKGIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 DA++VCD + + HYV D + F+ V+ F + Y G TP PC+ CNR +KF +L Sbjct: 64 ---DAKKVCDDLGIEHYVLDVRDEFKEKVMDYFVNEYMNGRTPNPCMVCNRHIKFGKMLD 120 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GA +ATGHY + + + + D +DQ YFL + +L + FP Sbjct: 121 FILSKGASFMATGHYTKLKNGL---------LSVGDDSNKDQVYFLSQIQKDRLSKIIFP 171 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL-EGDIVHLNG 250 +GD++K +R+LA+++G+ + K DSQ+ICFV GK + + G A G+IV NG Sbjct: 172 VGDLEKPKLRELAKQIGVRVYSKKDSQEICFVDDGKLKEFLIENTKGKAQKPGNIVDKNG 231 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 ILG+H G YTIGQR+GLG++ EPL+V+ DK+++ +IVG E L + +N Sbjct: 232 NILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDKDNNNIIVGENEDLFKDELTATRLNL 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYT 369 E +D +CF K RS +++N D V F + + GQ VFY Sbjct: 292 FSVPSLES--LDNLECFAKTRSRDILHKCVLKKNGDNFQVKFIDNKVRAITPGQGIVFYN 349 Query: 370 SDSNEARVLGGGIISG 385 +D N V+ GG I Sbjct: 350 NDGN---VIAGGFIES 362 >gi|328955218|ref|YP_004372551.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coriobacterium glomerans PW2] gi|328455542|gb|AEB06736.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coriobacterium glomerans PW2] Length = 380 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 142/380 (37%), Positives = 194/380 (51%), Gaps = 16/380 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAGQDVYDAR 77 + V+VAMSGGVDSSV A LL GY IG T+ LY+ +G C DV DAR Sbjct: 3 RKQSVLVAMSGGVDSSVAAHLLLERGYTCIGATMSLYDETTMGRDPEGICGCADDVADAR 62 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 VC + + H VFD+++ F VI F Y +G TP PC DCNR +KF LL ++G Sbjct: 63 AVCARLGIEHRVFDFKDLFERRVIDRFVEQYLSGRTPNPCADCNRALKFGALLDRALEIG 122 Query: 138 ADVLATGHYIRSRLYVGDD---GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 D +ATGHY R + G+ R++ D+ +DQSY L++ Q++L + PLG+ Sbjct: 123 CDFIATGHYARIETREDSEEGTGEGARLLRCATDISKDQSYMLYSLGQERLRRVLLPLGE 182 Query: 195 MKKE-SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 + K VR +ARE G A K DSQ ICF+ + D ++R GDI+ G +L Sbjct: 183 LIKSRDVRRIAREQGFPNARKKDSQGICFIADRDFADFIERRVGAALPAGDILDGTGAVL 242 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 GRH G I YTIGQR+GLGVA G PLFV LD + V +G + L + W Sbjct: 243 GRHRGAIRYTIGQRKGLGVAAGHPLFVTALDARCNTVTLGEQRELRADALIAEGWIWTMP 302 Query: 314 GLFED-----AVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACV 366 + G + R Q + R DD + + F++++ +A GQA V Sbjct: 303 AEEMEHRLAREREQGLHVLARTRYHQRAQAARMSRLGRDDLMRIVFDEAQYAIAPGQAVV 362 Query: 367 FYTSDSNEARVLGGGIISGS 386 Y D VLGGG + + Sbjct: 363 VYDDDI----VLGGGTVRST 378 >gi|310780562|ref|YP_003968894.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ilyobacter polytropus DSM 2926] gi|309749885|gb|ADO84546.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ilyobacter polytropus DSM 2926] Length = 376 Score = 425 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 138/376 (36%), Positives = 208/376 (55%), Gaps = 22/376 (5%) Query: 17 NPKDMR--VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY---NSRKASKRKGSCCAGQ 71 +P++ + V V MSGGVDSS VA +LK+ GY+VIG+T++ + + +CC+ Sbjct: 15 SPENNKYTVAVGMSGGVDSSTVAYMLKKQGYNVIGITMKHWSGMDELSEDSNSKTCCSLD 74 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+YDA+RVCD +++ HYV + +E F+ V+ F Y G TP PC+ CNR +K LL Sbjct: 75 DIYDAKRVCDDLDIPHYVINLKEPFKEKVVDYFIEEYEKGRTPNPCMVCNRYIKLGKLLE 134 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 ++GAD +ATGHY + + +G + D ++DQ YFL ++ L L FP Sbjct: 135 YGIKMGADFVATGHYAKIK-----NGN----LYMGDDPKKDQVYFLSQVKRENLKYLMFP 185 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNG 250 +GD++K VR +A +G+ + K DSQ++CF++ GK + + + + EGDIV +G Sbjct: 186 VGDLEKPQVRKIAEYLGVRVYAKRDSQEVCFIEDGKLKEFLVDMTDGRVEKEGDIVTKDG 245 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 ++LG+H G YTIGQR+GLG+ PL+V+ LD +RVIVG E L + ++ IN Sbjct: 246 KVLGKHKGFAFYTIGQRKGLGIQHETPLYVLKLDSKKNRVIVGGNEDLFKNELFADSINV 305 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDF-EKSEVGVASGQACVFY 368 L ED +DG +C K RS V+ D + V F + V GQ V Y Sbjct: 306 LSFDKIED--IDGIECQAKTRSRDILHLCKVEVIKDNLIKVKFLDNKVRAVTPGQGLVLY 363 Query: 369 TSDSNEARVLGGGIIS 384 D +V+ I Sbjct: 364 DFD---GKVIASAFIK 376 >gi|328907390|gb|EGG27156.1| tRNA-specific 2-thiouridylase MnmA [Propionibacterium sp. P08] Length = 366 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 146/381 (38%), Positives = 202/381 (53%), Gaps = 21/381 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRV 79 M+V+ AMSGG+DS+V AA L G+DV GV L L N R + CC+ +D +DARR Sbjct: 1 MKVLAAMSGGIDSAVAAARLVEAGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFDARRA 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG D Sbjct: 61 ADRLGIPFYVWDFSDRFAAEVIDPFIAEYQAGRTPNPCLRCNERIKFAALLERGLDLGYD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY ++++ G + R +D +DQSY L Q QL FPLG+ K Sbjct: 121 AVATGHYAQAKVIDG-----VTKLYRSVDPGKDQSYVLAVLDQDQLAHSLFPLGNSLKTD 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A +GL +ADK DS DICF+ G + + +G+I +G ++GRHNG Sbjct: 176 VRQEAAALGLSVADKPDSNDICFIPDGDTPGWLSEKIG--SADGEIRDESGALVGRHNGY 233 Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 +TIGQRRGL + G+P +V+ ++ ++ V+VG E L V+ I W Sbjct: 234 HRFTIGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVYHIEAIRPVWCSGE- 292 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 D + V++R+ DPVP V GV V+ E GVA GQA VFY D Sbjct: 293 ----PADTWHGQVQVRAHGDPVPATVSTVPSGVSVELEDPLRGVAPGQAAVFYDGD---- 344 Query: 376 RVLGGGIISGSKRSDAVEESL 396 V+G I G+ R+ E Sbjct: 345 LVVGSATICGTDRAGTTAEQA 365 >gi|315635922|ref|ZP_07891184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arcobacter butzleri JV22] gi|315479901|gb|EFU70572.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arcobacter butzleri JV22] Length = 367 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 124/381 (32%), Positives = 198/381 (51%), Gaps = 32/381 (8%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 K+ ++VV MSGGVDSSV A LLK+ GYDV+G+ ++ + C + DA+ Sbjct: 2 NKNKKIVVGMSGGVDSSVTALLLKQQGYDVVGLFMRNWEYGIKGS---QCPNRIEFEDAK 58 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 +V I + D+ + +R+ V F G TP P + CN+ +KF+ L+ + +G Sbjct: 59 KVGALIGIEVRGKDFVKEYRDRVFDVFLEGLKQGLTPNPDILCNKEIKFNVFLNEAKSMG 118 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD++ATGHY + Y K ++ P D +DQSYFL A + +QL FPLGD+ K Sbjct: 119 ADMIATGHYAKIAKY-----KDHFVLDTPKDNTKDQSYFLHALSSEQLSHAMFPLGDLTK 173 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + VR++AR L ++DK DS ICF+ K+ + + + A+ GDI+ NG+++G+H Sbjct: 174 KEVREIARAHNLPVSDKKDSTGICFIGNQKFDEFITQHLQ--AIPGDILDENGKVIGKHK 231 Query: 258 GIINYTIGQRRGLGVA----------MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIY 304 G++ YT+GQR+G+G+ +P FV D ++ + + L + Sbjct: 232 GLVCYTLGQRKGIGLGGIKGNESENNTHKPWFVASKDVVNNTLTIVQDTNHPLLMSKTVE 291 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQ 363 ++W+ E+A G K ++R Q V+ N++ V V F+ + V GQ Sbjct: 292 ASHMHWV----LEEAPKVGDKLMAQVRYRQQKQACTVVEANEEKVVVQFDNPQRAVTLGQ 347 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + V Y+ D LGGG IS Sbjct: 348 SLVLYSGD----YCLGGGFIS 364 >gi|322420793|ref|YP_004200016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacter sp. M18] gi|320127180|gb|ADW14740.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Geobacter sp. M18] Length = 357 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 150/375 (40%), Positives = 205/375 (54%), Gaps = 23/375 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + + K ++ VAMSGGVDSS VAALLK G +VIG+ ++L+ Q Sbjct: 1 MSADYKGKKIAVAMSGGVDSSTVAALLKEQGAEVIGINMKLFRREGED--------PQAK 52 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DAR V + + + + EE F ++ F S Y GETP PCV CNR VKF LL Sbjct: 53 GDARIVAEYLGIEFHQVHLEEEFARLIMEDFRSQYLGGETPNPCVRCNRYVKFGLLLDKA 112 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +LGAD LATGHY+R+ D + + L +DQSYFL+ TQ QL + FPLG Sbjct: 113 LELGADYLATGHYVRTSR----DDSGTYHLLKAAHLAKDQSYFLYTLTQPQLARVLFPLG 168 Query: 194 DMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 DM K+ VR A G+ +A KSDSQ+ICFV Y +++ G+IVH+NG + Sbjct: 169 DMPSKDEVRKRAAAFGIPVAQKSDSQEICFVPGDDYVAFLEKDGRLAGKSGEIVHVNGTV 228 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 LGRHNG YTIGQRRGLG+A EPL+VV +D ++RV+VG L + +++W+ Sbjct: 229 LGRHNGTHRYTIGQRRGLGIAWKEPLYVVAIDAINARVVVGEVGILFAPGLTACDLSWVV 288 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 + + KIR Q+PV V+ DG V F + + V GQ+ VFY + Sbjct: 289 -----PPDGETVQTTCKIRYRQNPVECSVKLLGDGRGEVRFSEPQKSVTPGQSVVFYQDE 343 Query: 372 SNEARVLGGGIISGS 386 ++GGG I G+ Sbjct: 344 ----ELVGGGRIVGA 354 >gi|87198069|ref|YP_495326.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Novosphingobium aromaticivorans DSM 12444] gi|123487802|sp|Q2G2Z1|MNMA_NOVAD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|87133750|gb|ABD24492.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Novosphingobium aromaticivorans DSM 12444] Length = 384 Score = 425 bits (1093), Expect = e-117, Method: Composition-based stats. Identities = 187/394 (47%), Positives = 240/394 (60%), Gaps = 23/394 (5%) Query: 2 VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61 +S A+ L DLD R+VVAMSGGVDSSVVA L G +VIGVTLQLY+ A+ Sbjct: 6 ALSGASSL--FDLDGPMSARRIVVAMSGGVDSSVVAGLAAATGAEVIGVTLQLYDYGAAT 63 Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 RKG+CCAG D+ DAR V D + ++HYVFD+E FR V+ FA Y +G TP+PCV CN Sbjct: 64 GRKGACCAGDDIRDARAVADRLGIAHYVFDHESSFREEVVERFADDYLSGRTPIPCVRCN 123 Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181 KF+DLL++ R+LGAD LATGHY+R + G + R +D RDQSYFL+ TT Sbjct: 124 MGPKFTDLLAMARELGADCLATGHYVRRVM-----GPAGPELHRAVDPARDQSYFLYGTT 178 Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 ++QL LRFPLG + K R +A E+GL +A K DSQDICFV G Y VV+ + Sbjct: 179 EEQLAFLRFPLGGLPKTETRLIAEELGLAVAAKPDSQDICFVPDGDYARVVRSVRPEGDA 238 Query: 242 EGDIVH-LNGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLE 299 G+IVH G++LG H GII+YT+GQRRGL + EPL+V+ LD S RV+VGPR L Sbjct: 239 PGEIVHAATGEVLGTHRGIIHYTVGQRRGLEIGGQPEPLYVIGLDAPSRRVLVGPRPMLA 298 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN---DDGVYVDFEKSE 356 V + E N +G DA K+RS PVPV ++ + + F + E Sbjct: 299 VASATIVETNRIG--PLPDAP-----LTAKVRSLARPVPVVLEGSFGEGASARIRFSQPE 351 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIISGSKRSD 390 GVA GQA V Y D RV+GGG I ++R + Sbjct: 352 YGVAPGQAAVLYAGD----RVVGGGWIDSTERWE 381 >gi|284035746|ref|YP_003385676.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Spirosoma linguale DSM 74] gi|283815039|gb|ADB36877.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Spirosoma linguale DSM 74] Length = 391 Score = 424 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 130/379 (34%), Positives = 207/379 (54%), Gaps = 20/379 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76 K R++VAMSGG+DSS+ A +L +GY+VIG+T++ ++ S +K++ CC+ + DA Sbjct: 3 KHGRILVAMSGGIDSSLAAVMLHEEGYEVIGMTMKTWDYASSGGTKKETGCCSLDSINDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + ++ HY+ D E F +AVI F Y G TP PCV CN +K+ LL +L Sbjct: 63 RNIAVSLGFPHYILDIREEFGDAVIDHFTGEYLEGRTPNPCVMCNTHIKWDALLRRADRL 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 + +ATGHY R + R ++ + +D +DQSY L+ +Q+ L + PLG ++ Sbjct: 123 DCESIATGHYAHIR-----EDNGRFVLSKGVDTLKDQSYVLWGVSQESLSRTKLPLGHLR 177 Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHL-NGQ 251 K +RD+A E G ++ KS+S +ICFV Y +KR G+ E G+ V G+ Sbjct: 178 KSEIRDMATERGFMELVTKSESYEICFVPDNDYRGFLKRRMPGLEAEVAGGNFVMEGTGK 237 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 +LG+H G YTIGQR+GLG+A G+P+FV + K+++ V++G + L + + ++N Sbjct: 238 VLGKHQGYPFYTIGQRKGLGMAFGQPMFVTEIRKDTNEVVLGVDKDLYRDGMIVSKLNL- 296 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + + K+R + ++ D + V F++ +A GQA VFY D Sbjct: 297 ---QKYPTLNGPMETVTKVRYKDPGTAATISQSGDKIEVLFKEGVSAIAPGQAAVFYEGD 353 Query: 372 SNEARVLGGGIISGSKRSD 390 V+GGG I S R Sbjct: 354 D----VIGGGWIMKSFRQG 368 >gi|238019350|ref|ZP_04599776.1| hypothetical protein VEIDISOL_01214 [Veillonella dispar ATCC 17748] gi|237864049|gb|EEP65339.1| hypothetical protein VEIDISOL_01214 [Veillonella dispar ATCC 17748] Length = 363 Score = 424 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 133/364 (36%), Positives = 199/364 (54%), Gaps = 18/364 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + VAMSGGVDSS+ AA+L + GY V G+TL L+ V DA+++CD Sbjct: 15 IAVAMSGGVDSSLTAAMLLKQGYKVFGITLWLW-----VSGTPYDSVPLAVTDAKKMCDF 69 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + H+V D + F + V+ F YA G TP PCV CN+ +KF +L+ +LGA + Sbjct: 70 LGIEHHVIDARDVFYDNVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATHMV 129 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ + + +D +DQSY ++ Q+ L L FPLG K R Sbjct: 130 TGHYAQVNY---NEETGLYELHKGVDPTKDQSYVMYNMNQRILSHLMFPLGGQCKTETRK 186 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA E L +A K DS DICF+ G Y +V G+IV +G++LG+HNG+ NY Sbjct: 187 LAAEYDLPVAKKPDSVDICFLPHGNYQKLVVEEMKDKPKSGNIVTEDGEVLGKHNGLFNY 246 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A PL+V+ + + VIVGP E L +R+ + N+L D + ++ + Sbjct: 247 TIGQRKGLGIAYKHPLYVIGFNGERNEVIVGPNERLFTNRMICKFYNFLDDTIHKELKAE 306 Query: 323 GFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 G KIR + +P P + +DD + V FE+ + + GQ+ FY ++LGG Sbjct: 307 G-----KIRYAANPSPCTARILDDDTMEVIFEEPQRAITPGQSVAFYNG----TQLLGGA 357 Query: 382 IISG 385 +I Sbjct: 358 VIDR 361 >gi|269797937|ref|YP_003311837.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Veillonella parvula DSM 2008] gi|282850166|ref|ZP_06259545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Veillonella parvula ATCC 17745] gi|269094566|gb|ACZ24557.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Veillonella parvula DSM 2008] gi|282579659|gb|EFB85063.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Veillonella parvula ATCC 17745] Length = 353 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 135/364 (37%), Positives = 201/364 (55%), Gaps = 18/364 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + VAMSGGVDSS+ AA+L + GY V G+TL L+ S V DA+++CD Sbjct: 5 IAVAMSGGVDSSLTAAMLLKQGYKVFGITLWLWVSGTPYDE-----VPLAVTDAKKMCDF 59 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + H+V D + F V+ F YA G TP PCV CN+ +KF +L+ +LGA + Sbjct: 60 LGIEHHVIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATHMV 119 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ + + +D +DQSY ++ Q+ L L FPLG K R Sbjct: 120 TGHYAQVNY---NEETGLYELHKGVDPTKDQSYVMYNMNQRILSHLMFPLGGQCKTETRK 176 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA E L +A K DS DICF+ G Y +V G G+IV +G++LG+HNG+ NY Sbjct: 177 LAAEYDLPVAKKPDSVDICFLPHGNYQKLVVEEMKGKPESGNIVTEDGEVLGKHNGLFNY 236 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A PL+V+ + + + VIVGP E L +R+ + N+L D + ++ + Sbjct: 237 TIGQRKGLGIAYKHPLYVIGFNGDRNEVIVGPNERLFTNRMICKFYNFLDDTIHKELKAE 296 Query: 323 GFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 G KIR + +P P + +DD + V FE+ + + GQ+ FY ++LGG Sbjct: 297 G-----KIRYAANPSPCTARILDDDTMEVIFEEPQRAITPGQSVAFYNG----TQLLGGA 347 Query: 382 IISG 385 +I Sbjct: 348 VIDR 351 >gi|163846255|ref|YP_001634299.1| tRNA-specific 2-thiouridylase MnmA [Chloroflexus aurantiacus J-10-fl] gi|222524010|ref|YP_002568480.1| tRNA-specific 2-thiouridylase MnmA [Chloroflexus sp. Y-400-fl] gi|205811637|sp|A9WFH2|MNMA_CHLAA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|254811449|sp|B9LK98|MNMA_CHLSY RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|163667544|gb|ABY33910.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chloroflexus aurantiacus J-10-fl] gi|222447889|gb|ACM52155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chloroflexus sp. Y-400-fl] Length = 359 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 155/364 (42%), Positives = 216/364 (59%), Gaps = 13/364 (3%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V+VAMSGGVDSS+ AALL G+ V GVT+ L++ + R+ CCA + ARRVC Sbjct: 4 VLVAMSGGVDSSLAAALLLEAGHQVTGVTMHLWDDDEQGLRESLCCAAEAAASARRVCAL 63 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + YVF+Y+ FR VI F +Y G TP PCV+CNR +KF LL R LG D +A Sbjct: 64 LGIPFYVFNYQREFRRHVIDYFIRAYTHGLTPNPCVECNRMIKFRALLDRARTLGFDAVA 123 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R + G+DG R + R +DLE+DQSY L Q +L L FP+G K VR+ Sbjct: 124 TGHYAR--IIQGEDG--RYQLWRAVDLEKDQSYMLHMLGQAELSRLIFPIGAYTKREVRE 179 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A GL AD+ +SQDICFV G Y ++++ + + G IV L G+ +GRH G+ Y Sbjct: 180 MAAARGLPSADREESQDICFVPDGDYRNLLRIESPESLVPGPIVDLEGREIGRHRGLPLY 239 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 T+GQRRGLG+ GEP +VV +D + +IVGP +L R + + W+ D + Sbjct: 240 TVGQRRGLGLGGGEPRYVVAIDPARNALIVGPAAALNRARFTVIDACWVDDA----PPAE 295 Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 F C V++R+ +P+P V + DG + V+ E+ + V+ GQA VFY +VLGGG Sbjct: 296 SFTCLVQVRAHAEPLPARVSQQPDGRWLVELERPQRAVSPGQAAVFYRG----QQVLGGG 351 Query: 382 IISG 385 I+ Sbjct: 352 WIAR 355 >gi|329849969|ref|ZP_08264815.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Asticcacaulis biprosthecum C19] gi|328841880|gb|EGF91450.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Asticcacaulis biprosthecum C19] Length = 395 Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats. Identities = 189/373 (50%), Positives = 251/373 (67%), Gaps = 7/373 (1%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P R+V AMSGGVDS+VVAALL GY+VIGVTLQLY+ A K+ G+CCAGQD++DAR Sbjct: 28 PAGARIVAAMSGGVDSTVVAALLAAAGYEVIGVTLQLYDHGAALKKTGACCAGQDIHDAR 87 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + I + HYV DYE RFR+ VI FA SY GETP+PC+ CN++VKF+DLL V R LG Sbjct: 88 MASEKIGIPHYVLDYESRFRDQVIEEFADSYLRGETPVPCIRCNQSVKFNDLLQVARDLG 147 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A+ +ATGHY+ D + R D RDQSYFLFATT++QL LRFPL + K Sbjct: 148 AEAMATGHYVERS-----DEDGVVSLRRAADQSRDQSYFLFATTREQLDYLRFPLAGIPK 202 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VRD+A ++GL +A K DSQDICFV +GKY +++ R+ +G I H++G++LG H+ Sbjct: 203 PQVRDIAVQLGLKVAQKPDSQDICFVPEGKYTNLIDRLRPQGREKGAIRHIDGRVLGTHD 262 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI YTIGQRRGL VA+GEPLFVV +D ++ ++VGPRE+L + L+E NWLG Sbjct: 263 GITGYTIGQRRGLNVAVGEPLFVVKIDPDAKEILVGPREALLTRALTLKETNWLGSETDV 322 Query: 318 DAVVDGFK-CFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 DA K ++RS++ PV + G+ V+F+ +E GVA GQACV Y + + R Sbjct: 323 DAAAGLRKPVLARVRSTRPPVAARLVAGVSGIEVEFDDAEEGVAPGQACVLYDVE-DSGR 381 Query: 377 VLGGGIISGSKRS 389 VLGGG I+ ++ + Sbjct: 382 VLGGGFIAATRAA 394 >gi|89898460|ref|YP_515570.1| tRNA-specific 2-thiouridylase MnmA [Chlamydophila felis Fe/C-56] gi|123483134|sp|Q253W3|MNMA_CHLFF RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|89331832|dbj|BAE81425.1| tRNA/rRNA methyltransferase [Chlamydophila felis Fe/C-56] Length = 361 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 129/380 (33%), Positives = 187/380 (49%), Gaps = 27/380 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + VVVAMSGGVDSSVVA LLK Y V+G+ ++ + +G C +D D + Sbjct: 2 NKTVVVAMSGGVDSSVVAYLLKNYTSYKVLGLFMKNWEEEDG---EGLCSTAKDYEDVEK 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V +++ +Y + + +R V F + Y+ G TP P V CNR +KF L R+LG Sbjct: 59 VAGQLDIPYYTVSFAKEYRERVFSRFLTGYSEGYTPNPDVLCNREIKFDLLQKKVRELGG 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY R + + R +D ++DQSYFL T ++ L ++ FPLGD K Sbjct: 119 DFLATGHYCRVSPD-----ENGVNLLRGIDPQKDQSYFLCGTRKESLENVIFPLGDKTKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHN 257 VR +A + GL A K DS ICF+ + + +++ + EG+IV + +++G H Sbjct: 174 EVRSIAAQAGLATAQKRDSTGICFIGKRPFKSFLEKFVPNL--EGNIVDYDSQRVVGHHE 231 Query: 258 GIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313 G YTIGQRRGL + E P +VV D + V + L + RE+NW Sbjct: 232 GAHYYTIGQRRGLDLGGSEKPCYVVGKDMEKNIVYIVRGEDHPLLYQTELTARELNWFV- 290 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + C K+R + + R +D V V F + GQA FY + Sbjct: 291 -----SPKSITTCSAKVRYRSNDEECEILLRGEDEVLVRFASPVKAITPGQAIAFYDGE- 344 Query: 373 NEARVLGGGIISGSKRSDAV 392 R LGGG+I S +V Sbjct: 345 ---RCLGGGVIEISMTPQSV 361 >gi|118580257|ref|YP_901507.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pelobacter propionicus DSM 2379] gi|205816920|sp|A1AQ29|MNMA_PELPD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|118502967|gb|ABK99449.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pelobacter propionicus DSM 2379] Length = 355 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 146/372 (39%), Positives = 203/372 (54%), Gaps = 22/372 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ VAMSGGVDSSV AALLK G+++IG+T+Q + + A Sbjct: 1 MKIAVAMSGGVDSSVAAALLKEQGHEIIGITMQFFAPSCQGAGTPAHDAAVVAA------ 54 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + ++H++ D E FR +I F S Y +G+TP PCV CNR VKF LL R+ GAD+ Sbjct: 55 -HLGITHHLLDLEHDFRQLIINDFISQYRSGQTPNPCVRCNRFVKFGLLLDAARERGADL 113 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KKES 199 LATGHY R+ + D R + +L +DQ+YFL +Q++L + FPLGD+ K+ Sbjct: 114 LATGHYARTSI----DPDGTRHLRVAANLRKDQTYFLHTLSQERLARVVFPLGDIGSKDE 169 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VRDLA GL +A+K DSQ++CF+ Y ++ A GDIVH+NG++LGRH G Sbjct: 170 VRDLAHRFGLPVAEKGDSQEVCFIPNDDYVSYLEENCALGGETGDIVHVNGRLLGRHRGT 229 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YTIGQR+GLG+A EPL+VV +D V+VG + + E+ W+ Sbjct: 230 HRYTIGQRKGLGIAWSEPLYVVEIDAARKLVVVGEEPHVYAQGLKAEEVGWI-----IAP 284 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + F+ KIR PV V G V F + V GQ+ VFY D VL Sbjct: 285 GKEEFEASCKIRYRHQPVACRVTLLQGGACRVLFHEPLKAVTPGQSVVFYQDD----EVL 340 Query: 379 GGGIISGSKRSD 390 GGG I+ + + D Sbjct: 341 GGGRITAAIKRD 352 >gi|326336750|ref|ZP_08202918.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325691220|gb|EGD33191.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 396 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 122/403 (30%), Positives = 202/403 (50%), Gaps = 49/403 (12%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RVVV +SGGVDSSV A LL+R+GY+VIG+ ++ ++ + C +D DA V Sbjct: 2 KRVVVGLSGGVDSSVAAYLLQREGYEVIGIFMKNWHDDSVT-ISNECPWLEDSNDALMVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + D E ++ ++ Y G TP P V CNR +KF+ L + LGAD Sbjct: 61 EKLGIPFQTVDMSEPYKQRIVDYMFREYERGRTPNPDVLCNREIKFATFLELALNLGADY 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + +G++ + D +DQSYFL +QQQL FP+G+++K V Sbjct: 121 VATGHYCR-KEEIEVNGQKIYRLLTGKDNNKDQSYFLCQLSQQQLEKALFPIGNLQKSEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248 R +A+++ L A+K DSQ +CFV + + + +++ A EG+I+ + Sbjct: 180 RTIAKQLDLVTAEKKDSQGLCFVGKVRLPEFLQQQLA--PKEGNIIEIPASWQGYQNKIP 237 Query: 249 ----------------------NGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDK 285 +G+I+G+H G +TIGQR+GL V EPLFV+ + Sbjct: 238 PVFKSYEDELHYYAKKYNYQPTDGKIVGKHEGAHFFTIGQRKGLHVGGTVEPLFVIETNT 297 Query: 286 NSSRVIVGP---RESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF 340 ++ + VG L +++ +++W+ L + K V+IR Q Sbjct: 298 QNNIIYVGQGSKHPGLFRRALFVKKEDVHWIRPDLAL-SPFQSMKVDVRIRYRQPLQKAH 356 Query: 341 VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 + + G+Y+DF + + + SGQ V+Y + ++G G I Sbjct: 357 LYLTNKGLYIDFIQPQSAITSGQFAVWYIEE----ELIGSGEI 395 >gi|313893420|ref|ZP_07826992.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Veillonella sp. oral taxon 158 str. F0412] gi|313442061|gb|EFR60481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Veillonella sp. oral taxon 158 str. F0412] Length = 353 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 134/364 (36%), Positives = 200/364 (54%), Gaps = 18/364 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + VAMSGGVDSS+ AA+L + GY V G+TL L+ S V DA+++CD Sbjct: 5 IAVAMSGGVDSSLTAAMLLKQGYKVFGITLWLWVSGTPYDE-----VPLAVTDAKKMCDF 59 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + H+V D + F V+ F YA G TP PCV CN+ +KF +L+ +LGA + Sbjct: 60 LGIEHHVIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATHMV 119 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ + + +D +DQSY ++ Q+ L L FPLG K R Sbjct: 120 TGHYAQVNF---NEETGLYELHKGVDPTKDQSYVMYNMNQRILSHLMFPLGGQCKTETRK 176 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA E L +A K DS DICF+ G Y +V G+IV +G++LG+HNG+ NY Sbjct: 177 LAAEYDLPVAKKPDSVDICFLPHGNYQKLVVEEMKAKPKTGNIVTEDGEVLGKHNGLFNY 236 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A PL+V+ + + + VIVGP E L +R+ + N+L D + ++ + Sbjct: 237 TIGQRKGLGIAYKHPLYVIGFNGDRNEVIVGPNERLFTNRMICKFYNFLDDTIHKELKAE 296 Query: 323 GFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 G KIR + +P P + +DD + V FE+ + + GQ+ FY ++LGG Sbjct: 297 G-----KIRYAANPSPCTARILDDDTMEVIFEEPQRAITPGQSVAFYNG----TQLLGGA 347 Query: 382 IISG 385 +I Sbjct: 348 VIDR 351 >gi|303232130|ref|ZP_07318833.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Veillonella atypica ACS-049-V-Sch6] gi|302513236|gb|EFL55275.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Veillonella atypica ACS-049-V-Sch6] Length = 353 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 132/364 (36%), Positives = 197/364 (54%), Gaps = 18/364 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + VAMSGGVDSS+ AA+L + GY V G+TL L+ S V DA+++CD Sbjct: 5 IAVAMSGGVDSSLTAAMLLKQGYKVFGITLWLWVSGTPYDE-----VPLAVTDAKKMCDF 59 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + H+V D + F V+ F YA G TP PCV CN+ +KF +L+ +LGA + Sbjct: 60 LGIEHHVIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATHMV 119 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ + + +D +DQSY ++ Q+ L L FPLG K R Sbjct: 120 TGHYAQVNY---NEDTGLYELHKGVDPTKDQSYVMYNMNQRILSHLMFPLGGQCKTETRK 176 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA E L +A K DS DICF+ G Y +V G+IV +G+ILG+H G+ NY Sbjct: 177 LAAEYDLPVAKKPDSVDICFLPHGNYQKLVVEEMKTKPKSGNIVTEDGEILGKHTGLFNY 236 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A PL+V+ + + VIVGP + L +R+ N+L D + ++ + Sbjct: 237 TIGQRKGLGIAYKHPLYVIGFNGERNEVIVGPNDRLFTNRMICNFYNFLDDTIHKELKAE 296 Query: 323 GFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 G KIR + +P P + +DD + V F++ + + GQ+ FY ++LGG Sbjct: 297 G-----KIRYAANPSPCTARILDDDTMEVIFDEPQRAITPGQSVAFYNG----TQLLGGA 347 Query: 382 IISG 385 +I Sbjct: 348 VIDR 351 >gi|262196730|ref|YP_003267939.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Haliangium ochraceum DSM 14365] gi|262080077|gb|ACY16046.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Haliangium ochraceum DSM 14365] Length = 391 Score = 424 bits (1090), Expect = e-116, Method: Composition-based stats. Identities = 158/390 (40%), Positives = 226/390 (57%), Gaps = 29/390 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKGSCCAGQDVYDARRVCD 81 +V A+SGGVDS+V AA+L G+ V+G+T++LY+ S ++ G CC +D+ DARRVC Sbjct: 7 IVAALSGGVDSAVTAAMLVEQGHRVVGMTMRLYDASGTSASVGGRCCGPRDIEDARRVCA 66 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + YV ++E F + VI F +Y AGETP PCV CN+ +KF+ LL+ R LGA+ + Sbjct: 67 HLGIPFYVVNFEVDFAHTVIDDFVDTYLAGETPNPCVKCNQHIKFTPLLARARALGAETV 126 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R +D + R D +DQSYFLF+ +++L +RFPLG M K+ VR Sbjct: 127 ATGHYARL-----EDTGAGIRLRRGRDASKDQSYFLFSMPREELASVRFPLGAMTKDEVR 181 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVK----RINAGIALEGDIVHLNGQILGRHN 257 D AR GL A K+DSQ+ICFV G Y V+ R + + GDIV GQ+LGRH Sbjct: 182 DKARAYGLPNAAKADSQEICFVPDGDYAGFVEAEALRRSRPVPASGDIVDGEGQVLGRHR 241 Query: 258 GIINYTIGQRRGLG-----VAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G+ +YTIGQRRGLG PL+V+ +D+ RV+VGPRE + +R++ WL Sbjct: 242 GVHHYTIGQRRGLGNLRTQTRSPTPLYVIGVDRARDRVVVGPREQAARRSVPVRDVRWLS 301 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG------VYVDFEKSEVGVASGQACV 366 E + G V++R P+P ++ +G V V F+ + V + GQA V Sbjct: 302 TPPAEGRLSAG----VQVRYRSSPLPATLELCGEGDERGKRVRVHFDDAAVIASPGQAAV 357 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396 FY D+ VLGGG I+ ++ + + Sbjct: 358 FYDGDT----VLGGGWIARDEQPLSETQPP 383 >gi|303229103|ref|ZP_07315905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Veillonella atypica ACS-134-V-Col7a] gi|302516227|gb|EFL58167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Veillonella atypica ACS-134-V-Col7a] Length = 353 Score = 423 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 131/364 (35%), Positives = 198/364 (54%), Gaps = 18/364 (4%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + VAMSGGVDSS+ AA+L + GY V G+TL L+ S V DA+++CD Sbjct: 5 IAVAMSGGVDSSLTAAMLLKQGYKVFGITLWLWVSGTPYDE-----VPLAVTDAKKMCDF 59 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + H++ D + F V+ F YA G TP PCV CN+ +KF +L+ +LGA + Sbjct: 60 LGIEHHIIDARDVFYENVVDYFVKEYAYGRTPNPCVFCNKNIKFDLMLNRALELGATHMV 119 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY + ++ + + +D +DQSY ++ Q+ L + FPLG K R Sbjct: 120 TGHYAQVNY---NEDTGLYELHKGVDPTKDQSYVMYNMNQRILSHIMFPLGGQCKTETRK 176 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA E L +A K DS DICF+ G Y +V G+IV +G+ILG+H G+ NY Sbjct: 177 LAAEYDLPVAKKPDSVDICFLPHGNYQKLVVEEMKTKPKSGNIVTEDGEILGKHTGLFNY 236 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A PL+V+ + + VIVGP E L +R+ + N+L D + ++ + Sbjct: 237 TIGQRKGLGIAYKHPLYVIGFNGERNEVIVGPNERLFTNRMICKFYNFLDDTIHKELKAE 296 Query: 323 GFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 G KIR + +P P + +DD + V F++ + + GQ+ FY ++LGG Sbjct: 297 G-----KIRYAANPSPCTARILDDDTMEVIFDEPQRAITPGQSVAFYNG----TQLLGGA 347 Query: 382 IISG 385 +I Sbjct: 348 VIDR 351 >gi|301605226|ref|XP_002932238.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Xenopus (Silurana) tropicalis] Length = 418 Score = 423 bits (1089), Expect = e-116, Method: Composition-based stats. Identities = 120/388 (30%), Positives = 187/388 (48%), Gaps = 36/388 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVV AMSGGVDSSV A LL+R GY+V GV + ++ A G C A +D DA RVC Sbjct: 6 RVVCAMSGGVDSSVAALLLRRRGYEVTGVFMNNWD---AVDEHGVCSAERDCEDAYRVCK 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 +++ + Y + + + V F + Y G TP P + CN+ +KF+ LS LGAD Sbjct: 63 KLDIPFHQVSYVKEYWHEVFSYFLNEYEKGRTPNPDILCNKHIKFNHFLSYAIDILGADA 122 Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQ 182 +ATGHY R+ L + +++ I + + D +DQ++FL +Q Sbjct: 123 IATGHYARTSLEDEEIFQQKYIKSPQNLFRNRFEIRHDAKLLQAADRIKDQTFFLSQISQ 182 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 L FPLG++ K+ V+ +A E G + + +S ICF+ + + + + A Sbjct: 183 YALRKTIFPLGELTKDFVKKIAAEAGFHHVLKRKESMGICFIGERNFENFILEYLE--AQ 240 Query: 242 EGDIVH-LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RES 297 G+ V +G+I+GRH G +T+GQR +G + FVV D + V V P + Sbjct: 241 PGNFVSAEDGKIMGRHKGWFLFTLGQRARIG-GQRDAWFVVDKDVTTGNVYVAPTTDHPA 299 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355 L + ++WL + ++ V + +C + + VP + N DG V+ K Sbjct: 300 LYRDLLRTDRMHWLSEDPPDELVKNKMMECHFRFQHQMALVPCVLTLNQDGTVWATLVKP 359 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383 + GQ VFY + LG G I Sbjct: 360 IRALTPGQFAVFYKGE----ECLGSGKI 383 >gi|330684725|gb|EGG96422.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Staphylococcus epidermidis VCU121] Length = 336 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 112/343 (32%), Positives = 177/343 (51%), Gaps = 20/343 (5%) Query: 52 LQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAG 111 ++ ++ + G C A +D D VC+ I + +Y ++E+ + + V F Y G Sbjct: 1 MKNWDD---TDENGVCTATEDYNDVIAVCNQIGIPYYAVNFEQEYWDKVFTYFLDEYKKG 57 Query: 112 ETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLER 171 TP P V CN+ +KF L +LGAD +ATGHY R R + M R +D + Sbjct: 58 RTPNPDVMCNKEIKFKAFLEHALKLGADYVATGHYARIRRH----EDGHVEMLRGIDNNK 113 Query: 172 DQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDV 231 DQ+YFL +QQQL + FP+GD+ K+ VR +A E L A K DS ICF+ + + Sbjct: 114 DQTYFLNQLSQQQLSKVMFPIGDIDKKRVRQIAEEQDLATAKKKDSTGICFIGERNFKTF 173 Query: 232 VKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRV 290 + + A GD+V L+G+ +G H+G++ YTIGQR GLG+ G+P FVV + + + Sbjct: 174 LSQYLP--AQSGDMVTLDGKKMGVHSGLMYYTIGQRHGLGIGGDGDPWFVVGKNLEDNVL 231 Query: 291 IV---GPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDD 346 V ++L + +++++ + + + GF C K R Q VFVQR N++ Sbjct: 232 YVEQGFHHDALYSDYLIASDVSFVNEQDVD--LEKGFYCTAKFRYRQKDTKVFVQRENNE 289 Query: 347 GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389 + V F++ + GQA VFY + LGG I ++ Sbjct: 290 AIRVTFDEPVRAITPGQAVVFYNDEV----CLGGATIDDVYKN 328 >gi|294155486|ref|YP_003559870.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma crocodyli MP145] gi|291599923|gb|ADE19419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma crocodyli MP145] Length = 372 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 112/379 (29%), Positives = 181/379 (47%), Gaps = 35/379 (9%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72 +VV+ MSGGVDSSV A LLK GY+VIG+ ++ ++S + G+ C QD Sbjct: 3 KKKVVIGMSGGVDSSVAAYLLKEQGYEVIGLFMRNWDSILNNDILGNEKINQDICPQEQD 62 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DA V +N+ + D+ + + V F Y G TP P + CN+ +KF+ + Sbjct: 63 YQDALSVAQKLNIPLHRVDFVKEYWTNVFNNFIEEYKKGRTPNPDILCNKYIKFNYFANY 122 Query: 133 T-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 +LGAD +A GHY + ++GK + R D +DQ+YFL T++QL + P Sbjct: 123 AFDKLGADYIAMGHYAKV-----ENGK----LYRAKDENKDQTYFLAQVTEEQLKKVIMP 173 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NG 250 L D++K +R LA ++ L A+K DS ICF+ + + ++ A EGDIV + Sbjct: 174 LYDLQKSQIRKLAADLNLSTANKKDSTGICFIGERNFTSFLQNYIP--AQEGDIVDITTN 231 Query: 251 QILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRES---LEVHRIYLR 306 + + +H G YTIGQR+GL + EP +V + + + V P L+ + + Sbjct: 232 KKVAKHVGCFYYTIGQRKGLNLGGFVEPYYVCGHNVKENILYVAPASHPEYLDSNELIAS 291 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365 + + VK R Q + ++ D+ + + + + V GQ Sbjct: 292 NL------TLNHKEFNNDNITVKFRYRQKDIKANIEILDNNFIKIYYPEKSQAVTPGQQV 345 Query: 366 VFYTSDSNEARVLGGGIIS 384 V Y + + LGG +I Sbjct: 346 VLYDGE----KCLGGAVIE 360 >gi|304372837|ref|YP_003856046.1| tRNA-specific 2-thiouridylase mnmA [Mycoplasma hyorhinis HUB-1] gi|304309028|gb|ADM21508.1| tRNA-specific 2-thiouridylase mnmA [Mycoplasma hyorhinis HUB-1] Length = 370 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 123/378 (32%), Positives = 192/378 (50%), Gaps = 35/378 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 +VV+ MSGGVDSSV A LLK+ GY+VIGV ++ ++S + KG+ C +D Sbjct: 3 KVVIGMSGGVDSSVAAYLLKQQGYEVIGVFMRNWDSTLNNDIKGNDSYNDFICPQEKDWQ 62 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ VC +N+ Y D+ + + V F Y +G+TP P + CN+ +KF L Sbjct: 63 DAQEVCKKLNIPIYRVDFIKEYWEEVFEDFIEKYKSGKTPNPDILCNKNIKFKHFLDYAL 122 Query: 135 Q-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + AD +A GHY ++ ++GK + + DL +DQSYFL QL FPL Sbjct: 123 KTFNADFIAMGHYAKT-----ENGK----LFKAKDLTKDQSYFLAQLNNYQLSKTIFPLA 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQI 252 ++ K VR +A E+ L +K DS ICF+ + K+ D ++ A GDIV ++ + Sbjct: 174 NITKTEVRKIATELDLITQNKKDSTGICFIGERKFTDFLQNYIP--AQPGDIVDISKNKK 231 Query: 253 LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 +G+H GI+ +T+GQR+GLG+ M +P FVV + + V P + L + + Sbjct: 232 IGKHIGIMYFTLGQRKGLGLNGMDQPYFVVGHNLEQKILYVAPQNQEQWLISDKADGINL 291 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVF 367 N + + D K VK R Q+ +P +Q D+ + V++ + V GQ V Sbjct: 292 NLI------ETNFDPNKLSVKFRYRQEDIPAKIQILDNAKIVVEYPQGFKAVTPGQEVVI 345 Query: 368 YTSDSNEARVLGGGIISG 385 Y D + +G I Sbjct: 346 YQED----KCIGAATIDK 359 >gi|291296936|ref|YP_003508334.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Meiothermus ruber DSM 1279] gi|290471895|gb|ADD29314.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Meiothermus ruber DSM 1279] Length = 362 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 143/370 (38%), Positives = 209/370 (56%), Gaps = 25/370 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RV+ AMSGGVDSSV AALLK+ GY+VIG ++ + K +CC+ Y+ARRV Sbjct: 2 GKRVLAAMSGGVDSSVSAALLKQQGYEVIGAMMRFWPDNKKDDCFETCCSPDAAYEARRV 61 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + Y+ DY E F+ +I PF + Y GETP PCV+CN VKF LL R LG D Sbjct: 62 ADIIGIPFYLLDYREEFQEKIIDPFIAGYQQGETPNPCVNCNTRVKFDSLLKKARMLGCD 121 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+ +R DG + R D ++DQ+YFL+ T ++ + + FP+G ++K Sbjct: 122 YVATGHYVINR-----DGG----LYRG-DPKKDQTYFLWGTPKEAIPHMLFPVGHLEKPQ 171 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258 VR LA + GL A K +SQ+ICFV QG D + + A G ++ L GQ +G HNG Sbjct: 172 VRALAEQFGLPTAKKPESQNICFV-QGDLKDFLAQHL--SARPGPLIDLETGQQIGEHNG 228 Query: 259 IINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 YT+GQ++GLG+ +VV ++ ++ VIVGPRE+ + +RE+N L Sbjct: 229 AQFYTVGQKKGLGLWKSHLERYVVQVNTTTNEVIVGPREACMWGGLEIREVN-----LLV 283 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 +A + V++R PVP V+ + + + + + V GQ+ V Y + R Sbjct: 284 EAQDLPERLEVQVRYRTRPVPARVEAMEAGRMVIRLAEPQFAVTPGQSAVLYQGE----R 339 Query: 377 VLGGGIISGS 386 +LGGG I+ + Sbjct: 340 LLGGGFITRA 349 >gi|84624072|ref|YP_451444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|123521874|sp|Q2P2Q7|MNMA_XANOM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|84368012|dbj|BAE69170.1| Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 378 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 125/386 (32%), Positives = 179/386 (46%), Gaps = 31/386 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV +SGGVDSSV A L + G + G+ +Q + A G C A D DA VC Sbjct: 5 HIVVGVSGGVDSSVAAWKLAQQGEPIAGLFMQNW----ADDGSGDCRAEDDRRDAVAVCG 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + D+ + + V F + YAAG TP P V CNR VKF L + LGA+ + Sbjct: 61 VLGMPFHFRDFSGEYWSGVFEHFLAEYAAGRTPNPDVLCNREVKFKHFLDAAQALGAERI 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + R D ++DQSYFL Q QL FP+GD++K ++R Sbjct: 121 ATGHYAQVAHRGRRWRLLRG-----ADRDKDQSYFLHQLGQSQLAATLFPIGDLEKSTLR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +AR+ GL K DS ICF+ + + + + R A G+I GQ + H G+ Sbjct: 176 RIARDAGLPTHAKKDSTGICFIGERDFREFLGRYLP--ARTGEIRDPQGQRIAEHPGVFY 233 Query: 262 YTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGD 313 +T+GQR GL + P +VV D S+ + V L+ + + +W+ Sbjct: 234 FTLGQREGLNIGGVRGRAAAPWYVVGKDVASNVLYVDQDRDSPLLQSRWLQSEQAHWVTG 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 F C + R Q P V DDG V V FE+ + V GQ+ V Y Sbjct: 294 A----PPARRFSCTAQTRYRQPDEPCTVDVQDDGSVQVHFERPQRAVTPGQSLVLYDG-- 347 Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398 LGG +I+ + DA E L+ Sbjct: 348 --KECLGGAVIAAT---DAPLERQLA 368 >gi|255536681|ref|YP_003097052.1| tRNA-specific 2-thiouridylase MnmA [Flavobacteriaceae bacterium 3519-10] gi|255342877|gb|ACU08990.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Flavobacteriaceae bacterium 3519-10] Length = 395 Score = 423 bits (1087), Expect = e-116, Method: Composition-based stats. Identities = 120/403 (29%), Positives = 194/403 (48%), Gaps = 47/403 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++VV +SGGVDSSV A LL++ G++V+ + ++ +N + C +D DA V Sbjct: 1 MKIVVGLSGGVDSSVAAYLLQKQGHEVVALFMRNWNDASVTLED-ECPWIEDSNDALMVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + V D E ++ ++ + Y G TP P V CNR VKF + LGA+ Sbjct: 60 QKLGIPFQVIDMSELYKEKIVDYMFAEYEKGRTPNPDVLCNREVKFDVFMKTALSLGAEK 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R V ++G + D +DQSYFL +Q QL FP+G++ K V Sbjct: 120 VATGHYARVDSTVDENGNEMFHLLAGKDNNKDQSYFLCQLSQDQLSKSLFPIGELTKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248 R++A+E+GL ADK DSQ +CF+ + +++ EG IV + Sbjct: 180 REIAKEIGLVTADKKDSQGLCFIGKVSLPTFLQQQLK--PKEGKIVEIFKDFPELTAEKP 237 Query: 249 ---------------------NGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKN 286 +G+I+G+H G +TIGQ +GLG+ E F++ D Sbjct: 238 QFATKLEELKFLSTKNSYQESDGKIIGKHQGAHYFTIGQSKGLGIGGHKESCFIISRDMP 297 Query: 287 SSRVIVGPR---ESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341 ++ + VG L + + EI+W+ + L + K +IR Q + Sbjct: 298 TNTIFVGEGKNFPGLYQTALKIDPSEIHWVREDL-RLLNGETMKVQARIRYRQALEEATL 356 Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + ++G++++FE + VA GQ +Y D +LG G+IS Sbjct: 357 YQFEEGLFIEFENPQSAVAEGQFAAWYMED----ELLGSGVIS 395 >gi|237739900|ref|ZP_04570381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 2_1_31] gi|229423508|gb|EEO38555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 2_1_31] Length = 362 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 135/376 (35%), Positives = 203/376 (53%), Gaps = 30/376 (7%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++ D + K ++V VAMSGGVDSS VA LLK+ GYD+ GVT++ + + Sbjct: 15 IEFDSDKKGIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 DA++VCD + + HYV D + F+ V+ F + Y G TP PC+ CNR +KF +L Sbjct: 64 ---DAKKVCDDLGIEHYVLDVRDEFKEKVMDYFVNEYMNGRTPNPCMVCNRHIKFGKMLD 120 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GA +ATGHY + + + + D +DQ YFL + +L + FP Sbjct: 121 FILSKGASFMATGHYTKLKNGL---------LSVGDDSNKDQVYFLSQIQKDRLSKIIFP 171 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNG 250 +GD++K +R+LA+++G+ + K DSQ+ICF+ GK + + G A G+IV NG Sbjct: 172 VGDLEKPKLRELAKQIGVRVYSKKDSQEICFIDDGKLKEFLIENTKGKAEKPGNIVDKNG 231 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 +ILG+H G YTIGQR+GLG++ EPL+V+ DK+++ +IVG E L + +N Sbjct: 232 KILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDKDNNNIIVGENEDLFKDELVATRLNL 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYT 369 E +D +CF K RS +++N D V F + + GQ VFY Sbjct: 292 FSVPSLES--LDNLECFAKTRSRDILHKCVLKKNGDNFQVKFIDNKVRAITPGQGIVFYN 349 Query: 370 SDSNEARVLGGGIISG 385 +D N V+ GG I Sbjct: 350 NDGN---VIAGGFIES 362 >gi|330444363|ref|YP_004377349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydophila pecorum E58] gi|328807473|gb|AEB41646.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydophila pecorum E58] Length = 361 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 133/372 (35%), Positives = 187/372 (50%), Gaps = 27/372 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + VVVAMSGGVDSSVVA LLKR Y+V+G+ ++ + + C + QD D + Sbjct: 2 NKTVVVAMSGGVDSSVVAYLLKRYTSYNVVGLFMKNWEEKTHDD---VCLSAQDYADVEK 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC +++ +Y + ++ V F Y+ G TP P + CNR +KF+ L R+LG Sbjct: 59 VCSQLDIPYYTVSFVREYQELVFSRFLKEYSLGYTPNPDILCNREIKFALLQKKVRELGG 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY RS L + R +D +DQSYFL T +Q L ++ FPLG+MKK Sbjct: 119 DFLATGHYCRSNLDAS-----GVSLFRGVDRNKDQSYFLSGTPRQALANVLFPLGEMKKN 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ-ILGRHN 257 VR LA E GL A K DS ICF+ + + +++ EGDIV + Q ILG+H Sbjct: 174 EVRALAEEAGLATARKKDSTGICFIGKRPFKQFLEQFVPK--KEGDIVDWDTQTILGKHE 231 Query: 258 GIINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 G YTIGQRRGL +P +VV D + V + L ++ +E+NW D Sbjct: 232 GAHYYTIGQRRGLDLGGTSKPCYVVGKDMEKNLVYIVQGEDHPLLYRTELFAKELNWFVD 291 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 C ++R + ++ ++D + V F V GQ FY D Sbjct: 292 ------PKSVHTCTAQVRYRSEDEQCTIEFVSEDRLRVCFITPIKAVTPGQTIAFYQGD- 344 Query: 373 NEARVLGGGIIS 384 R LG G+I Sbjct: 345 ---RCLGSGVID 353 >gi|330723585|gb|AEC45955.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma hyorhinis MCLD] Length = 370 Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 122/378 (32%), Positives = 191/378 (50%), Gaps = 35/378 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 +VV+ MSGGVDSSV A LLK+ GY+VIGV ++ ++S + KG+ C +D Sbjct: 3 KVVIGMSGGVDSSVAAYLLKQQGYEVIGVFMRNWDSTLNNDIKGNDSYNDFICPQEKDWQ 62 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+ VC +N+ Y D+ + + V F Y +G+TP P + CN+ +KF L Sbjct: 63 DAQEVCKKLNIPIYRVDFIKEYWEEVFEDFIEKYKSGKTPNPDILCNKNIKFKHFLDYAL 122 Query: 135 Q-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + D +A GHY ++ ++GK + + DL +DQSYFL QL FPL Sbjct: 123 KTFNVDFIAMGHYAKT-----ENGK----LFKAKDLTKDQSYFLAQLNNYQLSKTIFPLA 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQI 252 ++ K VR +A E+ L +K DS ICF+ + K+ D ++ A GDIV ++ + Sbjct: 174 NITKTEVRKIATELDLITQNKKDSTGICFIGERKFTDFLQNYIP--AQPGDIVDISKNKK 231 Query: 253 LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 +G+H GI+ +T+GQR+GLG+ M +P FVV + + V P + L + + Sbjct: 232 IGKHIGIMYFTLGQRKGLGLNGMDQPYFVVGHNLEQKILYVAPQNQEQWLISDKADGINL 291 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVF 367 N + + D K VK R Q+ +P +Q D+ + V++ + V GQ V Sbjct: 292 NLI------ETNFDPNKLSVKFRYRQEDIPAKIQILDNAKIVVEYPQGFKAVTPGQEVVI 345 Query: 368 YTSDSNEARVLGGGIISG 385 Y D + +G I Sbjct: 346 YQED----KCIGAATIDK 359 >gi|260892132|ref|YP_003238229.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ammonifex degensii KC4] gi|260864273|gb|ACX51379.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ammonifex degensii KC4] Length = 344 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 138/364 (37%), Positives = 194/364 (53%), Gaps = 27/364 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RV VA+SGGVDS+ A LL + GY+V GVT+ G++ A V Sbjct: 2 TRVAVALSGGVDSATAAFLLLQAGYEVFGVTM--------------LVTGEEGEKAAEVA 47 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + H+VFD + F VI PF +Y AG TP PCV CNR +KF LL +LGAD Sbjct: 48 AKLKIPHFVFDLRQEFAQEVIKPFVEAYLAGLTPNPCVWCNRKLKFGLLLEKALKLGADF 107 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R D + R ++ R D +DQSYFL++ QQQL + FPLG K Sbjct: 108 LATGHYARVWF---DPARERYLLARGKDRRKDQSYFLYSLNQQQLARVLFPLGGRTKAEN 164 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 L +++GL + + +SQD+CF++ G Y +++K + G I+ G+ +G H G+ Sbjct: 165 LLLVKKLGLPLRE--ESQDVCFLKGGDYRELIKAMAQEKVKPGPILDPQGKKIGTHRGLA 222 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQRRGLG A G+P +V+ LD + +IVGP E L + IN++ + Sbjct: 223 FYTIGQRRGLGHAWGKPYYVLALDPRRNALIVGPEEMLYRPSCRVEGINFI----LFERP 278 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 F V++R + VP + + V V+F + V GQA VFY D V+GG Sbjct: 279 PGPFTAAVQVRYTSPAVPATLFPEGEAVRVEFASPQRAVTPGQAAVFYQED----LVVGG 334 Query: 381 GIIS 384 G I+ Sbjct: 335 GTIA 338 >gi|257470341|ref|ZP_05634432.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|317064551|ref|ZP_07929036.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium ulcerans ATCC 49185] gi|313690227|gb|EFS27062.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium ulcerans ATCC 49185] Length = 359 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 138/375 (36%), Positives = 211/375 (56%), Gaps = 31/375 (8%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L D+N K + VAMSGGVDSS VA LLK+ GY+V GVT++ C + Sbjct: 12 LQYDENNKSTTIAVAMSGGVDSSTVAYLLKKQGYNVFGVTMK-------------TCKPE 58 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D DA++VCD + + +Y+ D + F+ V+ F Y G+TP PC+ CN+ +K L+ Sbjct: 59 D-SDAKKVCDDLGIPYYLLDVTKEFKEKVMDYFVDEYLKGKTPNPCMVCNKYIKLGLLID 117 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 R GAD +ATGHY + + DG ++ D +DQ YFL + L L+FP Sbjct: 118 FARSKGADFMATGHYTQMK-----DG----VLSMGDDAGKDQVYFLSQMKKDNLKYLKFP 168 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVHLNG 250 +G+++K VR+LA+ +G+ + K DSQ+ICFV+ GK + + + N G+I+ +NG Sbjct: 169 IGNLEKPKVRELAQLLGVRVYAKKDSQEICFVEDGKLKEFLMEMSNGKAGKPGNIIDVNG 228 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 ++LG+H G+ YTIGQR+GLG+A+ PL+V+ LD + VIVGP E L + + +N Sbjct: 229 KVLGKHKGLSFYTIGQRKGLGIALESPLYVIELDSKRNCVIVGPNEMLFKNSLIAESVNL 288 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSE-VGVASGQACVFY 368 + ED ++G +C+ K RS ++ + + V+F +++ V GQ VFY Sbjct: 289 ISVDNIED--LNGIECWAKTRSRDQLHKCKLEVLSSGNIKVNFIENQVRAVTPGQGVVFY 346 Query: 369 TSDSNEARVLGGGII 383 D +VLG G I Sbjct: 347 DED---HKVLGSGFI 358 >gi|295130676|ref|YP_003581339.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes SK137] gi|291375276|gb|ADD99130.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes SK137] Length = 366 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 147/381 (38%), Positives = 204/381 (53%), Gaps = 21/381 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRV 79 M+V+ AMSGGVDS+V AA L G+DV GV L L N R + CC+ +D +DARR Sbjct: 1 MKVLAAMSGGVDSAVAAARLVEAGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFDARRA 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG D Sbjct: 61 ADRLGIPFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R+++ G + R +D +DQSY L Q QL FPLG+ K + Sbjct: 121 AVATGHYARTKVVDG-----VTKLYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKMN 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A +GL +ADK DS DICF+ G + + +G+I +G ++G HNG Sbjct: 176 VRQEAAALGLSVADKPDSNDICFIPDGDTRGWLSEKIG--SADGEIRDESGALVGHHNGY 233 Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 ++TIGQRRGL + G+P +V+ ++ ++ V+VG E L VH I W Sbjct: 234 HHFTIGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWCS--- 290 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 V+ + ++R+ DPVP + GV V+ E S GVA GQA VFY D Sbjct: 291 --SEPVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD---- 344 Query: 376 RVLGGGIISGSKRSDAVEESL 396 V+G I G+ R+ E Sbjct: 345 LVVGSATICGTDRAGVKAEQA 365 >gi|254468139|ref|ZP_05081545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [beta proteobacterium KB13] gi|207086949|gb|EDZ64232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [beta proteobacterium KB13] Length = 364 Score = 421 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 120/380 (31%), Positives = 185/380 (48%), Gaps = 28/380 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K ++V +SGGVDS+V A +LK+ G++V G+ ++ + + + C + QD+ DA Sbjct: 2 KKKNIIVGLSGGVDSAVTAHILKQQGHNVRGLFMKNWEADDDDE---YCSSKQDLIDAIS 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + I + V ++ + ++ V F G TP P + CN +KF L+ QLGA Sbjct: 59 VAEKIGIDIEVVNFAKEYKEKVFNLFIDGLKKGFTPNPDILCNSEIKFEAFLNHAMQLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + + + MD +DQSYFL QQQL FPLG + K Sbjct: 119 DHIATGHYADVV-----EKDGLFYLLKGMDSTKDQSYFLHKLNQQQLSKSIFPLGKILKS 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A+E L D+ DS ICF+ + + + + + GDIV ++G+ +G+HNG Sbjct: 174 DVRKIAKENNLHNHDRKDSTGICFIGERPFAEFLNQFIPK--NPGDIVTVDGKNIGKHNG 231 Query: 259 IINYTIGQRR-----GLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 + YT+GQR+ G GEP FV D +++IV +L I EI+ Sbjct: 232 LTFYTVGQRQGLGIGGTSSGSGEPWFVAKKDMKENQLIVAQGKNHPALYHDSIEAEEIHA 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + +V+ KIR Q + + N DG+ F + + V GQ VFY Sbjct: 292 ISNSFPIQSVIG-----AKIRYRQPDAACQINEINSDGLVSFFGQKQWAVTPGQYIVFYD 346 Query: 370 SDSNEARVLGGGIISGSKRS 389 S+ LGG +I S Sbjct: 347 SNI----CLGGAVIKSGFNS 362 >gi|29840118|ref|NP_829224.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydophila caviae GPIC] gi|33301704|sp|Q820E9|MNMA_CHLCV RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|29834466|gb|AAP05102.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlamydophila caviae GPIC] Length = 360 Score = 421 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 128/375 (34%), Positives = 184/375 (49%), Gaps = 28/375 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + VVVAMSGGVDSSVVA LLK Y VIG+ ++ + + G C +D D R Sbjct: 2 NKTVVVAMSGGVDSSVVAYLLKTTTPYKVIGLFMKNWEEEDSD---GLCSTAKDYEDVER 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V +++ +Y + + +R V F Y+ G TP P V CNR +KF L R+LG Sbjct: 59 VAGQLDIPYYTVSFAKEYRERVFSRFLREYSKGYTPNPDVLCNREIKFDLLQRKVRELGG 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY R R + R +D ++DQSYFL T ++ L ++ FPLG M K Sbjct: 119 DFLATGHYCRLSSAA-----EGRHLLRGLDPQKDQSYFLCGTRRESLDNVLFPLGGMTKT 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG-QILGRHN 257 VR +A + L A K DS ICF+ + + +++ + EGDIV + +++GRH Sbjct: 174 KVRAIAEQARLATAQKRDSTGICFIGKRPFKSFLEKFVPNV--EGDIVDYDSQKVVGRHE 231 Query: 258 GIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313 G YTIGQRRGL + E P +VV D + V + L + +E+NW Sbjct: 232 GAHYYTIGQRRGLDLGGSEKPCYVVGKDMEKNIVYIVRGEDHPLLYQTELTAKELNWFV- 290 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--GVYVDFEKSEVGVASGQACVFYTSD 371 + +C K+R + + +D+ V V F + GQ FY + Sbjct: 291 -----SPESITRCSAKVRYRSEDEECEILHSDEDSEVRVRFSSPVKAITPGQTIAFYDGE 345 Query: 372 SNEARVLGGGIISGS 386 + LGGG+I S Sbjct: 346 ----KCLGGGVIEVS 356 >gi|294677198|ref|YP_003577813.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacter capsulatus SB 1003] gi|294476018|gb|ADE85406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodobacter capsulatus SB 1003] Length = 354 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 184/364 (50%), Positives = 237/364 (65%), Gaps = 14/364 (3%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSVVAA+LK +GYDVIGVTLQLY+ A +KG+CCAGQD++DARRV + +N Sbjct: 1 MSGGVDSSVVAAMLKEEGYDVIGVTLQLYDHGAALAKKGACCAGQDIHDARRVAEAMNFP 60 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 HYV DYE FR AVI FA +Y AG TP+PC+ CN VKF DLL R L AD +ATGHY Sbjct: 61 HYVLDYENTFREAVIEEFADAYLAGATPVPCIRCNERVKFKDLLETARDLDADCMATGHY 120 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDLAR 205 I+ +L G + D RDQSYFLF+TT +QL LRFPLG + K R LA Sbjct: 121 IQRKL-----GAHGPELHSAADPMRDQSYFLFSTTPEQLAFLRFPLGHLPSKAETRKLAA 175 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 GL +ADK DSQDICFV + + +++ G A G+IV L G++LG H G+I+YTIG Sbjct: 176 RFGLIVADKPDSQDICFVP-TELCERHRKLRPGAADPGEIVDLAGKVLGHHKGVIHYTIG 234 Query: 266 QRRGLGVAMG--EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDG 323 QRRGLG+ PL+VV LD ++ RVIVGP+E+L + + EINWLGD FE Sbjct: 235 QRRGLGIGGLGDHPLYVVKLDPDTRRVIVGPKEALATRLLRVAEINWLGDEPFESHP--E 292 Query: 324 FKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGI 382 + V+IRS++ P P ++ + V+ + E GV+ GQACVFY ++ +R+ GGG Sbjct: 293 REVSVRIRSTRAPRPAILRPLSATTAEVELIEPEEGVSPGQACVFY--ETEGSRIFGGGW 350 Query: 383 ISGS 386 I + Sbjct: 351 IVTA 354 >gi|332168761|gb|AEE18016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Krokinobacter diaphorus 4H-3-7-5] Length = 397 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 124/405 (30%), Positives = 192/405 (47%), Gaps = 50/405 (12%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 VVV +SGGVDSSV A LLK GY+VIG+ ++ ++ + C D DA V Sbjct: 2 KTVVVGLSGGVDSSVTAHLLKEQGYNVIGLFMKNWHDDSVT-ISDECPWLDDSNDAMLVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + D E++R ++ Y G TP P V CNR +KF + + LGAD Sbjct: 61 EKLGIPFQTVDLSEQYRERIVNYMFKEYEMGRTPNPDVLCNREIKFDVFMKIALSLGADY 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + + + DGK + D +DQSYFL +Q+QL FP+G ++K V Sbjct: 121 VATGHYCQ-KTSIEVDGKTMYQLKAGADDNKDQSYFLCQLSQEQLAKTLFPIGHLQKPKV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248 R++A E L A K DSQ +CF+ + + D +++ EG IV + Sbjct: 180 REIALEQDLVTAGKKDSQGLCFIGKVRLPDFLQQQLK--PKEGVIVEVMEDTIPEVAGGM 237 Query: 249 -----------------------NGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLD 284 G+++G+H G +TIGQR+GL V EPLFV+ D Sbjct: 238 EASNAFAKADLENLVKKPTYSVAEGKVVGKHQGAHYFTIGQRKGLAVGGTVEPLFVIDTD 297 Query: 285 KNSSRVIVGP---RESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339 + + + G L +++ EI+W+ + L AV + + +IR Q Sbjct: 298 VDENVIYTGQGKNHRGLYRKGLFVKEEEIHWIREDL-TLAVDETMEVEARIRYRQPLEKA 356 Query: 340 FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + R + G+YV F+ + +A GQ ++ + LG G+IS Sbjct: 357 TLYRVEGGMYVIFDNPQTAIAEGQFVAWHHGE----ECLGSGVIS 397 >gi|225631290|ref|ZP_03787968.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591011|gb|EEH12215.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 370 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 180/386 (46%), Positives = 243/386 (62%), Gaps = 19/386 (4%) Query: 3 VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKAS 61 + + + L DK P + VVAMSGGVDSSV AALL GY VIGVTLQLY A+ Sbjct: 1 MLKEFEIEPLLKDKTPHQTKAVVAMSGGVDSSVAAALLHNLGYQVIGVTLQLYGTDGNAN 60 Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 RKG+CCAGQD+YDA+RV +++ HY+ +YEE F+ VI FAS+Y GETP+PCV CN Sbjct: 61 ARKGACCAGQDIYDAKRVAESVGFPHYILNYEEIFKKEVIEDFASTYMRGETPIPCVRCN 120 Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181 +TVKF DLL VT+ LGADVL TGHY+R G+ +CR +D +DQSYFLFATT Sbjct: 121 QTVKFRDLLQVTKNLGADVLVTGHYVRRLEKNGE-----VKLCRSIDKSKDQSYFLFATT 175 Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 Q+QL LRFPLG K +R LA+ L I++K DSQDICFV + Y + ++ Sbjct: 176 QEQLKLLRFPLGGFYKSDIRKLAKYFSLQISEKPDSQDICFVSES-YSKTIAKLAPQSVQ 234 Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH 301 +G IV +NG++LG H+GI+N+T+GQR+GLG+A EPL+V+ ++ ++ VIVGP L Sbjct: 235 KGKIVDVNGKVLGEHSGIVNFTVGQRKGLGIAHNEPLYVIKINTENNEVIVGPINVLMQK 294 Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND--DGVYVDFEKSEVGV 359 +I ++E+NWL + +G + VK+RSS + D + V G+ Sbjct: 295 KILIKELNWL------EQPKEGMEVTVKLRSSHAGSLATIHSTDEKNKACVILNDDYFGI 348 Query: 360 ASGQACVFYTSDSNEARVLGGGIISG 385 + GQACV Y + +V+GGG I Sbjct: 349 SPGQACVAYKDE----QVIGGGWICS 370 >gi|50842596|ref|YP_055823.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes KPA171202] gi|289425475|ref|ZP_06427252.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes SK187] gi|81611733|sp|Q6A8Q1|MNMA_PROAC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|50840198|gb|AAT82865.1| probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes KPA171202] gi|289154453|gb|EFD03141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes SK187] Length = 366 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 147/381 (38%), Positives = 204/381 (53%), Gaps = 21/381 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRV 79 M+V+ AMSGGVDS+V AA L G+DV GV L L N R + CC+ +D +DARR Sbjct: 1 MKVLAAMSGGVDSAVAAARLVEAGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFDARRA 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG D Sbjct: 61 ADRLGIPFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R+++ G + R +D +DQSY L Q QL FPLG+ K + Sbjct: 121 AVATGHYARTKVVDG-----VTKLYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKMN 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A +GL +ADK DS DICF+ G + + +G+I +G ++G HNG Sbjct: 176 VRQEAAALGLSVADKPDSNDICFIPDGDTPGWLSEKIG--SADGEIRDESGALVGHHNGY 233 Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 ++TIGQRRGL + G+P +V+ ++ ++ V+VG E L VH I W Sbjct: 234 HHFTIGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWCS--- 290 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 V+ + ++R+ DPVP + GV V+ E S GVA GQA VFY D Sbjct: 291 --SEPVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD---- 344 Query: 376 RVLGGGIISGSKRSDAVEESL 396 V+G I G+ R+ E Sbjct: 345 LVVGSATICGTDRAGVKAEQA 365 >gi|58698498|ref|ZP_00373403.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Wolbachia endosymbiont of Drosophila ananassae] gi|225630917|ref|YP_002727708.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Wolbachia sp. wRi] gi|254811470|sp|C0R4S5|MNMA_WOLWR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|58534992|gb|EAL59086.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Wolbachia endosymbiont of Drosophila ananassae] gi|225592898|gb|ACN95917.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Wolbachia sp. wRi] Length = 370 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 179/386 (46%), Positives = 244/386 (63%), Gaps = 19/386 (4%) Query: 3 VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKAS 61 + + + L DK P ++ +VAMSGGVDSSV AALL GY VIGVTLQLY A+ Sbjct: 1 MLKEFEIEPLLKDKAPHQIKAIVAMSGGVDSSVAAALLHNLGYQVIGVTLQLYGTDGNAN 60 Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 RKG+CCAGQD+YDA+RV +++ HY+ +YEE F+ VI FAS+Y GETP+PCV CN Sbjct: 61 ARKGACCAGQDIYDAKRVAESVGFPHYILNYEEIFKKEVIEDFASTYMRGETPIPCVRCN 120 Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181 +TVKF DLL VT+ LGADVL TGHY+R G+ +CR +D +DQSYFLFATT Sbjct: 121 QTVKFRDLLQVTKNLGADVLVTGHYVRRLEKNGE-----VKLCRSIDKSKDQSYFLFATT 175 Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 Q+QL LRFPLG K +R LA+ L I++K DSQDICFV + Y + ++ Sbjct: 176 QEQLKLLRFPLGGFYKSDIRKLAKYFSLQISEKPDSQDICFVSES-YSKTIAKLAPQSVQ 234 Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH 301 +G IV +NG++LG H+GI+N+T+GQR+GLG+A EPL+V+ ++ ++ VIVGP L Sbjct: 235 KGKIVDVNGKVLGEHSGIVNFTVGQRKGLGIAHNEPLYVIKINTENNEVIVGPINVLMQK 294 Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND--DGVYVDFEKSEVGV 359 +I ++E+NWL + +G + VK+RSS + D + V G+ Sbjct: 295 KILIKELNWL------EQPKEGMEVTVKLRSSHAGSLATIHSTDEKNKACVILNDDYFGI 348 Query: 360 ASGQACVFYTSDSNEARVLGGGIISG 385 + GQACV Y + +V+GGG I Sbjct: 349 SPGQACVAYKGE----QVIGGGWICS 370 >gi|326386236|ref|ZP_08207860.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Novosphingobium nitrogenifigens DSM 19370] gi|326209461|gb|EGD60254.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Novosphingobium nitrogenifigens DSM 19370] Length = 401 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 187/386 (48%), Positives = 240/386 (62%), Gaps = 19/386 (4%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 DL + +D R+VVAMSGGVDSSVVAAL R G +VIGVTLQLY+ A+ RKG+CCAG+ Sbjct: 30 FDLPRPAQDCRIVVAMSGGVDSSVVAALAARSGAEVIGVTLQLYDHGAATGRKGACCAGE 89 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DAR V D + +HYVFD+E FR AV+ FA Y +G TP+PC+ CN KF+DL++ Sbjct: 90 DIRDARAVADRLGFAHYVFDHESDFREAVVERFADDYLSGRTPIPCIRCNMGPKFTDLMA 149 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + R LGAD LATGHY+R + + R +D RDQSYFL+ TT +QL LRFP Sbjct: 150 MARDLGADCLATGHYVRRVMTAT-----GPELHRAVDPARDQSYFLYGTTDEQLAFLRFP 204 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250 LG + K VR +A E+GL +A K DSQDICFV G Y VV I ++ GDIVH G Sbjct: 205 LGGLAKPDVRRIAGELGLGVAAKPDSQDICFVPDGDYARVVSAIRPEGSVAGDIVHAATG 264 Query: 251 QILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 ++LG+H GII+YT+GQRRGL + EPL+VV LD + RV+VGP+ L V R ++ E N Sbjct: 265 EVLGQHKGIIHYTVGQRRGLEIGGQAEPLYVVALDAPARRVLVGPKAMLAVDRAHIVETN 324 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGV--YVDFEKSEVGVASGQACV 366 +G D K+RS PVPV V+ +G + F E GVA GQA V Sbjct: 325 RIGPMPGPDEA-----LTAKVRSLAKPVPVAVEGPFGEGAATTIRFFAPEYGVAPGQAAV 379 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAV 392 Y D RV+GGG I ++ + Sbjct: 380 IYAGD----RVVGGGWIESTENAVTA 401 >gi|86604778|ref|YP_473541.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. JA-3-3Ab] gi|123508144|sp|Q2JY34|MNMA_SYNJA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|86553320|gb|ABC98278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. JA-3-3Ab] Length = 370 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 133/370 (35%), Positives = 201/370 (54%), Gaps = 19/370 (5%) Query: 2 VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61 + + L + ++ +P R+V A+SGGVDSS VAA+L GY V GVTL L Sbjct: 1 MATSPYPLVAPEIAGSPSRPRIVAALSGGVDSSTVAAILHEQGYAVEGVTLWLM------ 54 Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 + KG CC + DA +C+ + + H++ D E F+ ++ + YA G TPLPC CN Sbjct: 55 RGKGQCCT-DGLVDAAAICEQLGIPHHIVDSRELFQANIVDYLVAGYADGITPLPCSQCN 113 Query: 122 RTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 + VKF LL+ R+ LG +ATGHY R R R + R +D ++DQSYFL+ Sbjct: 114 KLVKFGPLLTYARETLGISQIATGHYARVRFNS---ELGRYQLLRAVDRQKDQSYFLYDL 170 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGI 239 +Q+ L FPLG+ K R +A GL A+K +SQD+C ++ G + + + Sbjct: 171 SQEHLAHSLFPLGNYTKAQTRQIAARYGLVTANKPESQDLCLIETYGSMRNFLDQHLGQ- 229 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE 299 G+IV G++LG H GI +YT+GQR+GLG+A PL+VV +D +RV+VG RE Sbjct: 230 -RPGEIVDTQGRVLGSHQGIHHYTVGQRKGLGIASSRPLYVVRIDAAMNRVVVGEREEAT 288 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVG 358 ++R++NW+ A + V++R VP + + + V + F + + G Sbjct: 289 QAEAWVRQVNWVS----TPAPDEPLAVEVQVRYRTPAVPATLIPESPERVKLQFAEPQFG 344 Query: 359 VASGQACVFY 368 V GQA V+Y Sbjct: 345 VTPGQAAVWY 354 >gi|86132339|ref|ZP_01050934.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dokdonia donghaensis MED134] gi|85817258|gb|EAQ38441.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dokdonia donghaensis MED134] Length = 397 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 125/405 (30%), Positives = 191/405 (47%), Gaps = 50/405 (12%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 VVV +SGGVDSSV A LLK GY+VIG+ ++ ++ + C D DA V Sbjct: 2 KTVVVGLSGGVDSSVTAYLLKEQGYNVIGLFMKNWHDDSVT-ISDECPWLDDSNDAMLVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + D E+++ ++ Y G TP P V CNR +KF + + LGAD Sbjct: 61 EKLGIPFQTVDLSEQYQERIVDYMFREYEMGRTPNPDVLCNREIKFDVFMKIALSLGADY 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + + + DGK + D +DQSYFL +Q QL FP+G ++K V Sbjct: 121 VATGHYCQ-KSSIEVDGKTVYQLIAGADNNKDQSYFLCQLSQDQLAKTLFPIGHLQKPEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248 RD+A + L A K DSQ +CF+ + + D +++ EG IV + Sbjct: 180 RDIALQQELVTAGKKDSQGLCFIGKVRLPDFLQQQLK--PKEGVIVEVPETVIPEVAGGD 237 Query: 249 -----------------------NGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLD 284 G+++G+H G +TIGQR+GLGV EPLFV+ D Sbjct: 238 KASNAFAKAELENLVKKPSYTVAEGRVVGKHQGAHYFTIGQRKGLGVGGTVEPLFVIDTD 297 Query: 285 KNSSRVIVGP---RESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339 + + G L +++ EI+W+ + L AV + + +IR Q Sbjct: 298 VKDNVIYTGQGKNHRGLYRKGLFVKEEEIHWIREDL-TLAVDETMQVEARIRYRQPLEKA 356 Query: 340 FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + R D G+YV F+ + +A GQ ++ + LG G+IS Sbjct: 357 TLYRVDGGMYVIFDNPQTAIAEGQFVAWHHGE----ECLGSGVIS 397 >gi|190571202|ref|YP_001975560.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018602|ref|ZP_03334410.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|229487430|sp|B3CLZ0|MNMA_WOLPP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|190357474|emb|CAQ54908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995553|gb|EEB56193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 368 Score = 420 bits (1081), Expect = e-115, Method: Composition-based stats. Identities = 175/385 (45%), Positives = 244/385 (63%), Gaps = 19/385 (4%) Query: 3 VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62 + + + L DK P + +VAMSGGVDSSV AALL GY+VIGVTLQLY S + Sbjct: 1 MLKEFEIEPLLKDKAPHQTKAIVAMSGGVDSSVAAALLYNLGYEVIGVTLQLYGS-DGNA 59 Query: 63 RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122 RKG+CCAGQD+YDA+ V +++ HY+ +YEE F+ VI FA++Y GETP+PCV CN+ Sbjct: 60 RKGACCAGQDIYDAKYVAESVGFPHYILNYEEIFKKEVIEDFANTYMRGETPIPCVRCNQ 119 Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 TVKF DLL VT+ LGADVL TGHY+R G+ +CR +D +DQSYFLFATT+ Sbjct: 120 TVKFRDLLQVTKNLGADVLVTGHYVRRLEENGE-----VKLCRSIDKSKDQSYFLFATTE 174 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 +QL LRFPLG K +R LA+ GL I++K DSQDICFV + Y + ++ + Sbjct: 175 EQLKLLRFPLGGFYKSDIRKLAKYFGLQISEKPDSQDICFVSES-YSKTIAKLAPQSVQK 233 Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302 G IV ++G++LG H+GI+N+T+GQRRGL +A EPL+V+ ++ ++ V+VGP +L + Sbjct: 234 GKIVDIHGKVLGEHSGIVNFTVGQRRGLCIAHNEPLYVIKINTENNEVVVGPINALMQKK 293 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND--DGVYVDFEKSEVGVA 360 I ++E+NWL + +G + VK+RSS + D + V G++ Sbjct: 294 ILVKELNWL------EQPKEGMEVTVKLRSSHAGSSATIYSTDEKNKACVILNDDYFGIS 347 Query: 361 SGQACVFYTSDSNEARVLGGGIISG 385 GQACV Y + +V+GGG I Sbjct: 348 PGQACVAYKGE----QVIGGGWICS 368 >gi|294783011|ref|ZP_06748335.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 1_1_41FAA] gi|294479889|gb|EFG27666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 1_1_41FAA] Length = 362 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 134/376 (35%), Positives = 202/376 (53%), Gaps = 30/376 (7%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++ D + K ++V VAMSGGVDSS VA LLK+ GYD+ GVT++ + + Sbjct: 15 IEFDSDKKGIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 DA++VC + + HYV D + F+ V+ F + Y G TP PC+ CNR +KF +L Sbjct: 64 ---DAKKVCGDLGIEHYVLDVRDEFKEKVMDYFVNEYMNGRTPNPCMVCNRHIKFGKMLD 120 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GA +ATGHY + + + + D +DQ YFL + +L + FP Sbjct: 121 FILSKGASFMATGHYTKLKNGL---------LSVGDDSNKDQVYFLSQIQKDRLSKIIFP 171 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNG 250 +GD++K +R+LA+++G+ + K DSQ+ICFV GK + + G A G+I+ NG Sbjct: 172 VGDLEKPKLRELAKQIGVRVYSKKDSQEICFVDDGKLKEFLIENTKGKAEKPGNIIDKNG 231 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 +ILG+H G YTIGQR+GLG++ EPL+V+ DK+++ +IVG E L + +N Sbjct: 232 KILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDKDNNNIIVGENEDLFKDELTATRLNL 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYT 369 E +D +CF K RS +++N D V F + + GQ VFY Sbjct: 292 FSVPSLES--LDNLECFAKTRSRDILHKCVLKKNGDNFQVKFIDNKVRAITPGQGIVFYN 349 Query: 370 SDSNEARVLGGGIISG 385 +D N V+ GG I Sbjct: 350 NDGN---VIAGGFIES 362 >gi|189502542|ref|YP_001958259.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Amoebophilus asiaticus 5a2] gi|229470222|sp|B3ETH8|MNMA_AMOA5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|189497983|gb|ACE06530.1| hypothetical protein Aasi_1200 [Candidatus Amoebophilus asiaticus 5a2] Length = 376 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 132/386 (34%), Positives = 204/386 (52%), Gaps = 18/386 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76 K RV+VAMSGG+DSS+ A LL GY+++G+T++ ++ S K++ CC+ + DA Sbjct: 2 KKGRVLVAMSGGIDSSITALLLHEQGYEIVGLTMKTWDYVSSGGRKKETGCCSLDSINDA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R V ++ H + D E F + VI F S Y AG TP PCV CN +K+ LL +L Sbjct: 62 RNVAVSLGFPHIILDIREEFGDYVISNFTSEYLAGRTPNPCVLCNTHIKWDALLRRADKL 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 + +ATGHY R G R I+ R DL +DQSY L+ +Q+ L PLG Sbjct: 122 NCEYIATGHYANIRHENG-----RYIVSRGKDLNKDQSYALWGVSQESLSRTLLPLGVFT 176 Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRI---NAGIALEGDIVHLNGQI 252 K +R++A + G ++ KS+S +ICF+ Y +KR G+ V +G + Sbjct: 177 KPEIREIASQRGFKELVTKSESYEICFIPDNDYRGFLKRRVDNLEEQVKGGEFVLEDGTV 236 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G H G YT+GQR+GLG+ +G P++V + + +RV++G + L +Y+ ++N Sbjct: 237 VGHHEGYPFYTVGQRKGLGITLGYPVYVTEIQADKNRVVLGTFDELARDGMYVHKLN--- 293 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 G + D K+R + P ++++ D + V F K +A GQA VFY D Sbjct: 294 MGKYPDLQGRRLDSVTKVRYNDPGSPAVLEQDGDIMKVFFGKGVHAIAPGQAAVFYEGDD 353 Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398 V+GGG I S + A ++ S Sbjct: 354 ----VIGGGWIKASFKQPAFKKYNFS 375 >gi|289428353|ref|ZP_06430040.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes J165] gi|289158502|gb|EFD06718.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes J165] Length = 366 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 147/381 (38%), Positives = 204/381 (53%), Gaps = 21/381 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRV 79 M+V+ AMSGGVDS+V AA L G+DV GV L L N R + CC+ +D +DARR Sbjct: 1 MKVLAAMSGGVDSAVAAARLVEAGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFDARRA 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG D Sbjct: 61 ADRLGIPFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R+++ G + R +D +DQSY L Q QL FPLG+ K + Sbjct: 121 AVATGHYARTKVVDG-----VTKLYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKMN 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A +GL +ADK DS DICF+ G + + +G+I +G ++G HNG Sbjct: 176 VRQEATALGLSVADKPDSNDICFIPDGDTPGWLSEKIG--SADGEIRDESGALVGHHNGY 233 Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 ++TIGQRRGL + G+P +V+ ++ ++ V+VG E L VH I W Sbjct: 234 HHFTIGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWCS--- 290 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 V+ + ++R+ DPVP + GV V+ E S GVA GQA VFY D Sbjct: 291 --SEPVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD---- 344 Query: 376 RVLGGGIISGSKRSDAVEESL 396 V+G I G+ R+ E Sbjct: 345 LVVGSATICGTDRAGVKAEQA 365 >gi|315223915|ref|ZP_07865760.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Capnocytophaga ochracea F0287] gi|314946087|gb|EFS98091.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Capnocytophaga ochracea F0287] Length = 397 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 117/405 (28%), Positives = 191/405 (47%), Gaps = 50/405 (12%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RVVV +SGGVDSSV A LLK GY+VIG+ ++ ++ + C +D DA V Sbjct: 2 KRVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVT-ISDECPWLEDSNDALLVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + D E ++ ++ + Y G TP P V CNR +KF + + LGAD Sbjct: 61 EKLGIPFQTVDMSEPYKARIVDYMFNEYEHGRTPNPDVLCNREIKFDVFMKLALSLGADY 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + +GK+ + D +DQSYFL +Q QL FP+G+++K V Sbjct: 121 VATGHYCR-KEEIEINGKKIYRLLSGKDENKDQSYFLCQLSQDQLSKALFPIGELQKSEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248 R +A+ L ADK DSQ +CFV + + + +++ +GDI+ + Sbjct: 180 RAIAKAQDLITADKKDSQGLCFVGKVRLPEFLQQKLQ--PKQGDIIEISNDWKGYTDFDM 237 Query: 249 -----------------------NGQILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLD 284 +G+ +G H G +T GQR+GL EPLF++ D Sbjct: 238 PRTFETYEGELEYLSQRFVYQPEDGKKIGTHQGAHYFTKGQRKGLNVGGTKEPLFIIETD 297 Query: 285 KNSSRVIVGP---RESLEVHRIY--LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339 + + G L ++ + +W+ + L V + + V+IR Q Sbjct: 298 IEKNIIYTGQGHTHRGLFRSALFIAAPDEHWIREDLAL-KVYESKEFMVRIRYRQPLQKA 356 Query: 340 FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + + ++G+Y+ F + + V GQ +Y D ++G G+IS Sbjct: 357 VLYKVENGLYIHFSEPQSAVTEGQFAAWYNGD----ELVGSGVIS 397 >gi|260799001|ref|XP_002594488.1| hypothetical protein BRAFLDRAFT_87680 [Branchiostoma floridae] gi|229279722|gb|EEN50499.1| hypothetical protein BRAFLDRAFT_87680 [Branchiostoma floridae] Length = 383 Score = 419 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 118/369 (31%), Positives = 179/369 (48%), Gaps = 24/369 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VVVA+SGGVDSSV A LLKR GY V GV ++ +++ G C A +D DA VC Sbjct: 5 HVVVALSGGVDSSVAALLLKRKGYQVTGVFMRNWDT---VNELGVCQADRDCEDAEYVCR 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLGADV 140 +++ + + + + N V Y G TP P + CN+ +KF + + AD Sbjct: 62 RLDIPFHQVNLVKDYWNDVFSEMLKEYQHGWTPNPDILCNKRIKFRTFFNYVMDKFEADA 121 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R+ ++ + + +D +DQ++FL QQ L FPLG++ K V Sbjct: 122 LATGHYARTSIHD-------VKLLQALDSWKDQTFFLSQIPQQALRRALFPLGELTKPVV 174 Query: 201 RDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258 + +A++ G IA K +S ICF+ + ++ G V ++G++LG H G Sbjct: 175 KQMAQDAGFTHIAKKKESMGICFIGTRNFPTFLQEYLE--TEPGQFVSVVDGKVLGEHKG 232 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315 YTIGQR GLG M EP FVV D +++ + V P +L I ++W+ D Sbjct: 233 ACMYTIGQRAGLG-GMKEPWFVVDRDTSTNSIFVCPTTDHPALYRQLIMTESVHWIADPP 291 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374 + V + C + + V + + + V+V + + GQ VFY D Sbjct: 292 RDLYVDQMYDCHFRFQHRMPLVKCTLTLSGNNQVWVSLAEPIRALTPGQYAVFYKGD--- 348 Query: 375 ARVLGGGII 383 LGGG I Sbjct: 349 -ECLGGGKI 356 >gi|237744375|ref|ZP_04574856.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 7_1] gi|229431604|gb|EEO41816.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 7_1] Length = 362 Score = 419 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 136/383 (35%), Positives = 205/383 (53%), Gaps = 31/383 (8%) Query: 6 ATRLNS-LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64 A+ N ++ D + K+++V VAMSGGVDSS VA LLK+ GYD+ GVT++ + + Sbjct: 8 ASEFNKYIEFDSSKKNIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS---- 63 Query: 65 GSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTV 124 DA++VCD + + HYV D + F+ V+ F S Y G TP PC+ CNR + Sbjct: 64 ----------DAKKVCDDLGIEHYVLDVRDEFKKKVVDYFVSEYMNGRTPNPCMVCNRHI 113 Query: 125 KFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 KF +L GA +ATGHY + + + + D +DQ YFL + + Sbjct: 114 KFGKMLDFILSKGASFMATGHYTKLKNGL---------LSVGDDSNKDQVYFLSQIQKDR 164 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-G 243 L + FP+GD++K +R+LA ++G+ + K DSQ+ICFV GK + + G A + G Sbjct: 165 LNKIIFPVGDLEKSKLRELAEQLGVRVYSKKDSQEICFVDDGKLKEFLIENTKGKAKKTG 224 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 +IV +G ILGRH G YTIGQR+GLG++ EPL+V+ D+ ++ +IVG E L + Sbjct: 225 NIVDRDGNILGRHKGFSFYTIGQRKGLGISSEEPLYVLAFDRETNNIIVGKNEDLFKDEL 284 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASG 362 +N E +D +CF K RS ++++ D V F + + G Sbjct: 285 IATRLNLFSVSSLES--LDNLECFAKTRSRDILHKCLLKKDGDNFQVKFIDNKVRAITPG 342 Query: 363 QACVFYTSDSNEARVLGGGIISG 385 Q VFY ++ N V+ GG I Sbjct: 343 QGIVFYNNEGN---VIAGGFIER 362 >gi|320101712|ref|YP_004177303.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Isosphaera pallida ATCC 43644] gi|319748994|gb|ADV60754.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Isosphaera pallida ATCC 43644] Length = 401 Score = 419 bits (1078), Expect = e-115, Method: Composition-based stats. Identities = 128/385 (33%), Positives = 198/385 (51%), Gaps = 20/385 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRVC 80 RVV+AMSGGVDSSV A LLK GYDV+G+ ++ + ++R +CC+ D DA+ V Sbjct: 5 RVVLAMSGGVDSSVAAGLLKNQGYDVVGLFMRTGVHFDDPTRRAKTCCSQFDALDAQAVA 64 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D +++ + D+E F ++ F Y G TP PCV CN +KF L + +++GAD Sbjct: 65 DRLDIPFHALDFEADF-GRIMEDFTEEYLRGRTPNPCVMCNIWLKFGKLWAYGKKVGADF 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R D R + R +D +DQSY L ++ L + P+G KE + Sbjct: 124 VATGHYARVVQ----DESGRPRIARGVDRAKDQSYVLSGVRREILQRMLLPVGGFTKEEI 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R AR+ L + K+DSQ+ICF+ Y ++ + G++V +G+++G H+G Sbjct: 180 RAKARDWNLPVHSKADSQEICFIPDHDYVKFIRERRPNLETAGEVVDESGRVVGTHDGYE 239 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +T+GQR+GL +A GEP +V+ +D +V+VG R +L + NW D V Sbjct: 240 GFTVGQRKGLKIAFGEPRYVIQIDPRRRQVVVGDRTALVKPGLIADRFNWHLDPPEPGQV 299 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRND--------DGVYVDFEKSEVGVASGQACVFYTSDS 372 ++ +IRS VP ++R + + V V F + + + GQ Y Sbjct: 300 ---WEVVAQIRSQHAGVPALLERLEPSARSEGGERVVVRFAEPQSAITPGQVVTLYD--- 353 Query: 373 NEARVLGGGIISGSKRSDAVEESLL 397 RV+GGG I +DA Sbjct: 354 CYERVVGGGWIERPLEADASTAPAK 378 >gi|282853930|ref|ZP_06263267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes J139] gi|282583383|gb|EFB88763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes J139] Length = 366 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 147/381 (38%), Positives = 205/381 (53%), Gaps = 21/381 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRV 79 M+V+ AMSGGVDS+V AA L G+DV GV L L N R + CC+ +D +DARR Sbjct: 1 MKVLAAMSGGVDSAVAAARLVEAGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFDARRA 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG D Sbjct: 61 ADRLGIPFYVWDFSDRFVVEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R+++ G + R +D +DQSY L Q QL FPLG+ K + Sbjct: 121 AVATGHYARTKVIDG-----VTKLYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKVN 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A +GL +ADK DS DICF+ G + + + +G+I +G ++G HNG Sbjct: 176 VRQEAAALGLSVADKPDSNDICFIPDGDTPGWLS--DKIGSADGEIRDESGALVGHHNGY 233 Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 ++TIGQRRGL + G+P +V+ ++ ++ V+VG E L VH I W Sbjct: 234 HHFTIGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWCSGE- 292 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 V+ + ++R+ DPVP + GV V+ E S GVA GQA VFY D Sbjct: 293 ----PVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAVVFYDGD---- 344 Query: 376 RVLGGGIISGSKRSDAVEESL 396 V+G I G+ R+ E Sbjct: 345 LVVGSATICGTDRAGVKAEQA 365 >gi|296328692|ref|ZP_06871209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154291|gb|EFG95092.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 362 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 134/376 (35%), Positives = 198/376 (52%), Gaps = 30/376 (7%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L D N ++R+ VAMSGGVDSS VA LLK+ GYD+ GVT++ + + Sbjct: 15 LKFDSNNSNIRIGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 DA++VCD + + HY+ D + F+ V+ F + Y G TP PC+ CNR +KF +L Sbjct: 64 ---DAKKVCDDLGIEHYILDVRDEFKEKVVDYFVNEYMNGRTPNPCMVCNRHIKFGKMLD 120 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GA +ATGHY + + + + D +DQ YFL + +L + FP Sbjct: 121 FILSKGASFMATGHYTKLKNGL---------LSVGDDSNKDQVYFLSQIEKNKLSKIIFP 171 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNG 250 +GD++K +R+LA ++G+ + K DSQ+ICFV GK + G A G+IV NG Sbjct: 172 VGDLEKTKLRELAEQLGVRVYSKKDSQEICFVDDGKLKQFLIENTKGKAEKPGNIVDKNG 231 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 ILG+H G YTIGQR+GLG++ EPL+V+ D+ ++ +IVG E L + +N Sbjct: 232 NILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDRKTNNIIVGQNEDLFRDELIATRLNL 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYT 369 E +D +CF K RS ++++ D V F + + GQ VFY Sbjct: 292 FSVSSLEG--LDNLECFAKTRSRDILHKCLLKKDGDNFQVKFIDNKVRAITPGQGIVFYN 349 Query: 370 SDSNEARVLGGGIISG 385 +D N V+ GG I Sbjct: 350 NDGN---VIAGGFIEK 362 >gi|85375520|ref|YP_459582.1| tRNA-specific 2-thiouridylase MnmA [Erythrobacter litoralis HTCC2594] gi|122543295|sp|Q2N6A6|MNMA_ERYLH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|84788603|gb|ABC64785.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erythrobacter litoralis HTCC2594] Length = 384 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 183/383 (47%), Positives = 237/383 (61%), Gaps = 21/383 (5%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 DL + + R+VVAMSGGVDSSVVAAL G +VIG+TLQLY+ A+ RKG+CCAG Sbjct: 17 FDLPRPAAESRIVVAMSGGVDSSVVAALAHASGAEVIGITLQLYDYGAATGRKGACCAGD 76 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ DAR V D + ++HYVFD+E FR V+ FA Y +G TP+PC+ CN KF+DLL Sbjct: 77 DIQDARAVADRLGIAHYVFDHESAFREDVVEQFADDYLSGRTPVPCIRCNMGPKFTDLLR 136 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + R+LGAD LATGHY+R G+ + R +D RDQSYFL+ TT+ QL LRFP Sbjct: 137 MARELGADCLATGHYVRRVA-----GEHGPELHRALDPARDQSYFLYGTTETQLDFLRFP 191 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250 LGD+ K +VR+LA GL A K DSQDICFV G Y +VK + GDIVH G Sbjct: 192 LGDLPKTAVRELAEAAGLRNAAKPDSQDICFVPDGDYAKIVKTMRPEGGTPGDIVHAQTG 251 Query: 251 QILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 ++LG+H GI++YT+GQRRGL + EPL+VV LD +SRV VGP+ L V + E N Sbjct: 252 EVLGQHKGIVHYTVGQRRGLEIGGQPEPLYVVGLDAAASRVKVGPKRLLAVQAASVIETN 311 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGV--YVDFEKSEVGVASGQACV 366 +G + K+RS PVP+ + + DG + FE+ E GVA GQA V Sbjct: 312 RIG-------PLPDVPLTAKVRSLAKPVPITLDGSLGDGATTRITFEQPEFGVAPGQAGV 364 Query: 367 FYTSDSNEARVLGGGIISGSKRS 389 Y D RV+GGG I ++ + Sbjct: 365 IYAGD----RVIGGGWIDSTESA 383 >gi|260494072|ref|ZP_05814203.1| tRNA methyl transferase [Fusobacterium sp. 3_1_33] gi|260198218|gb|EEW95734.1| tRNA methyl transferase [Fusobacterium sp. 3_1_33] Length = 362 Score = 418 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 134/376 (35%), Positives = 201/376 (53%), Gaps = 30/376 (7%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++ D + K+++V VAMSGGVDSS VA LLK+ GYD+ GVT++ + + Sbjct: 15 IEFDSSKKNIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 DA++VCD + + HYV D + F+ V+ F S Y G TP PC+ CNR +KF +L Sbjct: 64 ---DAKKVCDDLGIEHYVLDVRDEFKKKVVDYFVSEYMNGRTPNPCMVCNRHIKFGKMLD 120 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GA +ATGHY + + + + D +DQ YFL + +L + FP Sbjct: 121 FILSKGASFMATGHYTKLKNGL---------LSVGDDSNKDQVYFLSQIQKDRLNKIIFP 171 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNG 250 +GD++K +R+LA ++G+ + K DSQ+ICFV GK + + G A + G+IV +G Sbjct: 172 VGDLEKSKLRELAEQLGVRVYSKKDSQEICFVDDGKLKEFLIENTKGKAEKTGNIVDKDG 231 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 ILGRH G YTIGQR+GLG++ EPL+V+ D+ ++ +IVG E L + +N Sbjct: 232 NILGRHKGFSFYTIGQRKGLGISSEEPLYVLAFDRETNNIIVGKNEDLFKDELIATRLNL 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYT 369 E +D +CF K RS ++++ D V F + + GQ VFY Sbjct: 292 FSVSSLES--LDNLECFAKTRSRDILHKCLLKKDGDNFQVKFIDNKVRAITPGQGIVFYN 349 Query: 370 SDSNEARVLGGGIISG 385 + N V+ GG I Sbjct: 350 DEGN---VIAGGFIER 362 >gi|213962751|ref|ZP_03391012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Capnocytophaga sputigena Capno] gi|213954746|gb|EEB66067.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Capnocytophaga sputigena Capno] Length = 397 Score = 418 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 116/405 (28%), Positives = 193/405 (47%), Gaps = 50/405 (12%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RVVV +SGGVDSSV A LLK GY+VIG+ ++ ++ + C +D DA V Sbjct: 2 KRVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVT-ISDECPWLEDSNDALLVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + D E ++ ++ + Y G TP P V CNR +KF + + LGAD Sbjct: 61 EKLGIPFQTVDMSEPYKARIVDYMFNEYEHGRTPNPDVLCNREIKFDVFMKLALSLGADY 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + +GK+ + D +DQSYFL +Q+QL FP+G+++K V Sbjct: 121 VATGHYCR-KEEIEINGKKIYRLLSGKDENKDQSYFLCQLSQEQLSKALFPIGELQKSEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248 R +A+ L ADK DSQ +CFV + + + +++ +GDI+ + Sbjct: 180 RAIAKAQDLITADKKDSQGLCFVGKVRLPEFLQQKLQ--PKQGDIIEIPNDWKGYAEFDM 237 Query: 249 -----------------------NGQILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLD 284 +G+ +G H G +T GQR+GL EPLF++ D Sbjct: 238 LRLFETYEDELKYLSQRFVYQPEDGKKVGTHQGAHYFTKGQRKGLNVGGTKEPLFIIETD 297 Query: 285 KNSSRVIVGP---RESLEVHRIYLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339 + + G L +++ + +W+ + L V + + V+IR Q Sbjct: 298 IEKNIIYTGQGHTHRGLFRSALFIATPDEHWIREDLAL-KVYESKEFMVRIRYRQPLQKA 356 Query: 340 FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + + +G+Y+ F + + + GQ +Y+ D ++G G+IS Sbjct: 357 VLYKVKNGLYIHFSEPQSAITEGQFAAWYSGD----ELVGSGVIS 397 >gi|88607883|ref|YP_505483.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaplasma phagocytophilum HZ] gi|123494742|sp|Q2GJG8|MNMA_ANAPZ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|88598946|gb|ABD44416.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaplasma phagocytophilum HZ] Length = 378 Score = 418 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 173/383 (45%), Positives = 239/383 (62%), Gaps = 17/383 (4%) Query: 3 VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62 + +L+SL K P++ VVVAMSGGVDSSVVA LL + GY VIG T+QLY+S AS Sbjct: 1 MINNLQLDSLVPGKRPEETTVVVAMSGGVDSSVVAVLLHKMGYKVIGATMQLYSSPNASS 60 Query: 63 RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122 K SCC D+YDA++V + HYV +YEE FR VI F +SY AGETP+PC+ CN+ Sbjct: 61 GK-SCCGNADIYDAKKVAASFGFPHYVLNYEEVFRKEVIEDFVNSYKAGETPIPCIKCNQ 119 Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 TVKF D+L + R +G DV+ATGHY+R G+ + D +DQSYFLF+ T Sbjct: 120 TVKFRDMLKMARTIGGDVVATGHYVRRLEVEGE-----LQIWSGKDKNKDQSYFLFSMTL 174 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 +QL +RFPLG++ K VR +A+ + +++ADK DSQDICFV + Y + ++ + Sbjct: 175 EQLKFVRFPLGNLVKGDVRKIAQYLNIEVADKPDSQDICFVPK-NYKKTLASLDPSAIKK 233 Query: 243 GDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302 G I H++G +LG H+GI N+T+GQR+GLG+A PL+VV LD + VIVGP SL + Sbjct: 234 GKIHHIDGSVLGEHDGIANFTVGQRKGLGIAYPYPLYVVALDPVKNTVIVGPSSSLVKTQ 293 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVA 360 ++LR++NWL + G V++RSS V + R+ D V + V V+ Sbjct: 294 LFLRDLNWLS---KDQIPEHGLSASVRLRSSSSAVQATISRSAKDGKGRVVLHEGCV-VS 349 Query: 361 SGQACVFYTSDSNEARVLGGGII 383 GQACV Y ++ R+LGGG I Sbjct: 350 PGQACVIYDNE----RLLGGGWI 368 >gi|237741734|ref|ZP_04572215.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 4_1_13] gi|294785652|ref|ZP_06750940.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 3_1_27] gi|229429382|gb|EEO39594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 4_1_13] gi|294487366|gb|EFG34728.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 3_1_27] Length = 362 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 134/376 (35%), Positives = 199/376 (52%), Gaps = 30/376 (7%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L+ + N +++V VAMSGGVDSS VA LLK+ GYD+ GVT++ + + Sbjct: 15 LEFNSNNSNIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 DA++VCD + + HYV D F+ V+ F + Y G TP PC+ CNR +KF +L Sbjct: 64 ---DAKKVCDDLGIEHYVLDVRNEFKEKVMDYFVNEYMNGRTPNPCMVCNRHIKFGKMLD 120 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GA +ATGHY + + + + D +DQ YFL + +L + FP Sbjct: 121 FILSKGASFMATGHYTKLKNGL---------LSVGDDSNKDQVYFLSQIEKDRLSKIIFP 171 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNG 250 +GD++K +R+LA++MG+ + K DSQ+ICFV GK + G A G+IV NG Sbjct: 172 VGDLEKTKLRELAKQMGVRVYSKKDSQEICFVDDGKLKQFLIENTKGEAEKPGNIVDKNG 231 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 ILG+H G YTIGQR+GLG++ EPL+V+ DK ++ +IVG E L + +N Sbjct: 232 NILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDKKTNNIIVGENEDLFKDELIATRLNL 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYT 369 E +D +CF K RS ++++++ V F + + GQ VFY Sbjct: 292 FSVSSLES--LDNLECFAKTRSRDILHKCLLKKDENNFQVKFIDNKVRAITPGQGIVFYN 349 Query: 370 SDSNEARVLGGGIISG 385 + N V+ GG I Sbjct: 350 DEGN---VIAGGFIER 362 >gi|311746884|ref|ZP_07720669.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Algoriphagus sp. PR1] gi|126578570|gb|EAZ82734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Algoriphagus sp. PR1] Length = 403 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 123/408 (30%), Positives = 198/408 (48%), Gaps = 53/408 (12%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVVV +SGGVDSSV A LL GY+VIG+ ++ ++ + C +D DA V Sbjct: 4 KPRVVVGLSGGVDSSVAAHLLLEQGYEVIGMFMKNWHDESVT-ISNECPWMEDSTDAMLV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + + D E +R ++ Y AG TP P + CNR +KF L ++L AD Sbjct: 63 AEKLGIPFQAIDLSEEYRERIVDYMFGEYKAGRTPNPDILCNREIKFDIFLKAAQKLKAD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + + + DGK + D +DQSYFL Q+QL FP+G ++K Sbjct: 123 FVATGHYCQ-KGEIEVDGKPVYQLLAGADPNKDQSYFLCQLDQEQLSKALFPIGHLQKPE 181 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL----------- 248 VR +A+E+ L ADK DSQ +CF+ + + D +++ +G I+ + Sbjct: 182 VRKIAKELDLITADKKDSQGLCFIGKVRLPDFLQQQLK--PKKGRIIQIPEDLEIYKSQK 239 Query: 249 ---------------------------NGQILGRHNGIINYTIGQRRGLG-VAMGEPLFV 280 G++LG HNG +T+GQR+GL G+PLFV Sbjct: 240 IPVGVAAEDLDLEDLEAISLPLHYRPEEGKVLGEHNGAHYFTVGQRKGLNVGGTGKPLFV 299 Query: 281 VYLDKNSSRVIVG---PRESLEVHRIYLRE--INWLGDGLFEDAVVDGFKCFVKIRSSQD 335 + D + + G L + ++++E I+W+ + L + V + + +IR Q Sbjct: 300 ISTDTKENVIYTGLGETHPGLLRNGLFVKEDQIHWIREDL-KLQVGESARYKARIRYRQP 358 Query: 336 PVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 + R + G++V F++++ GVASGQ +Y + + +G G I Sbjct: 359 LTWATLIRKEKGLFVIFDQAQKGVASGQFVAWYDENES----IGSGTI 402 >gi|153005212|ref|YP_001379537.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaeromyxobacter sp. Fw109-5] gi|205811178|sp|A7HCV7|MNMA_ANADF RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|152028785|gb|ABS26553.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaeromyxobacter sp. Fw109-5] Length = 349 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 155/363 (42%), Positives = 205/363 (56%), Gaps = 15/363 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MRV+VA+SGGVDSS AALL +G+DVIGV++++ + A +R SCCA D+ DAR Sbjct: 1 MRVLVALSGGVDSSTAAALLVAEGHDVIGVSMRVADYSDA-RRGRSCCAPDDLEDARAAA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +++ YV + E RFR VI PF Y G TP PCV CN VKF LL+ R LGA Sbjct: 60 RRLDIPFYVANVEARFRERVIEPFVRDYVEGRTPNPCVACNSDVKFDWLLARARALGA-K 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R G R +CR D +DQ+YFL+ Q+ L D+ FP+GD+ K V Sbjct: 119 LATGHYARVERRGG-----RFALCRAGDPAKDQTYFLYGLGQEALRDVLFPVGDLAKRDV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A+K++SQ+ICFV QG D V G G+IV G++LGRH+G+ Sbjct: 174 RAVAAQAGLPNAEKAESQEICFVTQGDAGDFVALRAPGSVRAGEIVSTAGEVLGRHDGVH 233 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +T+GQRRGLG+A P +VV L+ ++RV+VG R + E+ W+ V Sbjct: 234 RFTVGQRRGLGLAGPAPRYVVRLEPGTARVVVGSAGEASRDRFAVTEVRWIAGAPPPRPV 293 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 VK+R + V + G V + GVA GQA VFY D VLGG Sbjct: 294 A----ARVKVRHRHEGEEGTVTPDGGGGQVRLARPVRGVAPGQAAVFYDGD----EVLGG 345 Query: 381 GII 383 G I Sbjct: 346 GRI 348 >gi|187250509|ref|YP_001874991.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Elusimicrobium minutum Pei191] gi|186970669|gb|ACC97654.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Elusimicrobium minutum Pei191] Length = 354 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 130/373 (34%), Positives = 198/373 (53%), Gaps = 28/373 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS----CCAGQDVYDA 76 M+++V +SGGVDSS+ AALLK GY+V G T+ +++ + + +D+ A Sbjct: 1 MKILVGLSGGVDSSLTAALLKDKGYEVTGATMSIWDPSLPTPATPNNACLGPEEEDIKTA 60 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V I + +V D E ++ VI F Y G TP PC+ CN +KF L + ++ Sbjct: 61 SAVAKEIGIGFHVIDCREEYKKIVIENFKDEYKKGRTPNPCIWCNSFIKFGALPASAKKQ 120 Query: 137 G--ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 G D ATGHY R + ++ R + + +D +DQ+YFL+ TQ+QL + FPLG+ Sbjct: 121 GVIFDKFATGHYAR---IIFNEETGRYQLRKALDEAKDQTYFLYRLTQKQLSETLFPLGE 177 Query: 195 MKKESVRDLAREMGLDIADKSDSQDI-CFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 K+ VR LA+E L A+K+DSQD C G Y D+++ A G IV G +L Sbjct: 178 YTKKQVRALAKEKNLLAAEKADSQDFYC----GDYNDILQF----SAQPGSIVDKEGNVL 229 Query: 254 GRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G+H+GI NYTIG+R+G+G+ EP++V+ L + V+VG ++ L + EINW Sbjct: 230 GKHDGIWNYTIGKRKGVGISGAKEPMYVIELLPKQNLVVVGTKKDLYKDVLTASEINW-- 287 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSD 371 + + K KIR P + + V F++ ++ + +GQ+ VFY D Sbjct: 288 --GSVEEPKEPVKVQAKIRQMHTPSNATLTPLPGNRAEVKFDEPQMSITAGQSVVFYQGD 345 Query: 372 SNEARVLGGGIIS 384 VLGGGII Sbjct: 346 I----VLGGGIID 354 >gi|284052528|ref|ZP_06382738.1| tRNA-specific 2-thiouridylase MnmA [Arthrospira platensis str. Paraca] gi|291571991|dbj|BAI94263.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Arthrospira platensis NIES-39] Length = 359 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 138/375 (36%), Positives = 204/375 (54%), Gaps = 30/375 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 ++VV +SGGVDSS AA+L GY+V+G+TL L + KG CC+ V DA +C Sbjct: 2 QKIVVGLSGGVDSSAAAAILHHQGYEVVGLTLWLM------RGKGQCCSEGMV-DAAHIC 54 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGAD 139 + + + HY+ D + F+ +I Y AG TPLPC CNR VKF +L +L + Sbjct: 55 EQLGIPHYIVDSRDLFQTHIIDYLVEGYGAGITPLPCSQCNRAVKFGPMLGYASTELNIN 114 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R D R + R +D +DQSYFL+ TQ L + FPLG++ K Sbjct: 115 RIATGHYARVSYNSQCD---RHQLKRAVDRTKDQSYFLYDLTQDILGAVVFPLGEVPKSE 171 Query: 200 VRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R +A + L ADK +SQD+C V+ G + + G +G+IV G++LG H+G Sbjct: 172 TRRIAAQYNLKTADKPESQDLCLVEANGSMRAFLDKYITG--KKGEIVDPEGRVLGEHDG 229 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I +YTIGQRRGLG++ EPL+V+ +D +RV+VG R+ + +R +NW+ Sbjct: 230 IHHYTIGQRRGLGISAPEPLYVLSIDPGRNRVVVGDRDRMTQTECTIRRVNWVSIA---- 285 Query: 319 AVVDGFKCFVKIRSSQDPVPVFV--------QRNDDGVYVDFEKSEVGVASGQACVFYTS 370 + + V+IR P+PV V + V + F++ G+ GQA V+Y+ Sbjct: 286 PPSEPIRAEVQIRYRSKPLPVTVVPLSSEPDPQIGTRVRLIFDEPIFGITPGQAAVWYSE 345 Query: 371 DSNEARVLGGGIISG 385 D +LGGG+I Sbjct: 346 D----LLLGGGVIER 356 >gi|73920128|sp|Q72Q44|MNMA_LEPIC RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 375 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 139/384 (36%), Positives = 213/384 (55%), Gaps = 13/384 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDA 76 +++VAMSGGVDS+V A LL DGY+VIGV L+ + K SCC+ +D+ DA Sbjct: 2 SKGKIIVAMSGGVDSAVTAGLLMEDGYEVIGVNLRTWEYEAPACDTTKKSCCSPEDIRDA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R V ++ + YV E+ F+ VI F Y G+TP PCV+CN VKF L + L Sbjct: 62 RDVGISLKIPFYVIKMEKVFQEKVIDRFIEDYQHGKTPNPCVECNTFVKFGALFEKAKAL 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 G D +ATGHY R R + +D+ ++Q+Y+L+ +Q+ L ++ FPLG+M Sbjct: 122 GIDKIATGHYARIARN-----GERYAIANGIDVGKNQAYYLYGLSQENLKNVIFPLGEMT 176 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +AR MGL +ADKS+SQ+ICF+ + Y +++ N G +G+I+G+H Sbjct: 177 KPEVRQIARRMGLPVADKSESQEICFIPENDYRKFLEKKN-VEFTPGFFKLKDGRIVGKH 235 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G N+TIGQR+GLG+A PL+V+ ++ + VI+G + ++N+ G Sbjct: 236 KGRENFTIGQRKGLGIAWKNPLYVISIE-DDGSVILGEENETYNESFSVIDLNFQGLAPL 294 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + +C V++R P+ + + +G+ V + GV GQ+ VFY DS+ Sbjct: 295 NEG--ESLECRVQVRYRHIPIRCKITKMKEGLIVHPLEDVRGVTPGQSAVFYPLDSD--Y 350 Query: 377 VLGGGIISGSKRSDAVEESLLSVI 400 +L GGIIS V E +SV+ Sbjct: 351 LLLGGIISKGSIQMRVAEPAISVL 374 >gi|86140336|ref|ZP_01058895.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Leeuwenhoekiella blandensis MED217] gi|85832278|gb|EAQ50727.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Leeuwenhoekiella blandensis MED217] Length = 399 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 118/407 (28%), Positives = 188/407 (46%), Gaps = 52/407 (12%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 VVV +SGGVDSSV A LLK GY+VIG+ ++ ++ + C D DA V Sbjct: 2 KTVVVGLSGGVDSSVSAYLLKEAGYNVIGLFMKNWHDDSVT-ISDECPWLDDSNDAMLVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + D E+++ ++ Y G TP P V CNR +KF + + LGAD Sbjct: 61 EKLGIPFQTVDLSEQYKERIVDYMFWEYEMGRTPNPDVLCNREIKFDVFMKIALDLGADY 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + R DGK + D +DQSYFL +Q+QL FP+G ++K V Sbjct: 121 VATGHYCQ-RGETEIDGKPVYQLLAGADANKDQSYFLCQLSQEQLAKTLFPIGHLQKSEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248 R +A+ L A+K DSQ +CF+ + + D +++ EG IV + Sbjct: 180 RKIAKAQDLVTAEKKDSQGLCFIGKVRLPDFLQQKLK--PKEGVIVEIPAERAQEKINDF 237 Query: 249 -------------------------NGQILGRHNGIINYTIGQRRGL-GVAMGEPLFVVY 282 G+++G+H G +T GQR+GL EPLFV+ Sbjct: 238 QEANDSDVAVTDVAVLAKKPKYSIAEGKVVGKHQGAHYFTKGQRKGLAVGGTPEPLFVID 297 Query: 283 LDKNSSRVIVGP---RESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPV 337 D + + G L +++ E++++ + L + + +IR Q Sbjct: 298 TDVEENVIYTGQGKNHPGLLRSALFVQEDEVHYIREDLKLQE-GEVVETKARIRYRQPLE 356 Query: 338 PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 ++ + +DG++V FE + ++ GQ +Y D LG G+IS Sbjct: 357 KAWLHKVEDGLFVSFENPQSAISEGQFVAWYDGD----ECLGSGVIS 399 >gi|21672533|ref|NP_660600.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25009493|sp|Q8K9Q8|MNMA_BUCAP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|21623156|gb|AAM67811.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 367 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 121/378 (32%), Positives = 202/378 (53%), Gaps = 28/378 (7%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 K+ +V++AMSGGVDSSV A LK + Y V G+ ++ + K C A +D+ DA Sbjct: 3 KKNKKVIIAMSGGVDSSVSAWFLKNENYQVEGLFMKNWEEDD---EKEYCNAAKDLSDAE 59 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQL 136 VC +N+ + ++ + + V F + + G+TP P + CN+ +KF + ++L Sbjct: 60 EVCKKLNIHLHKVNFSKEYWEKVFENFLNEHKKGKTPNPDILCNKEIKFKIFFNYAIQEL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 +D +ATGHY + + G + + + +DL +DQSYFL+ QL ++ FP+G +K Sbjct: 120 QSDYIATGHYAQIKKKNG-----KYFLLKAVDLNKDQSYFLYTLKGIQLKNILFPIGGLK 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A+++GL +A+K DS ICF+ K + + R A +GDI+ G I+G+H Sbjct: 175 KSQVRIIAKKIGLKVAEKKDSTGICFIGPKKINNFLNRYIK--AEKGDIITTEGTIVGKH 232 Query: 257 NGIINYTIGQRRGLGVAMGE-----PLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 NG+ YT+GQR+GLG+ + P +V+ + ++ +I+ + L + +I Sbjct: 233 NGLFCYTLGQRKGLGIGGIKGNYNIPWYVIEKNIINNTLIIAQGSCNKRLMSIGLIAEKI 292 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVF 367 NW+ D D ++ F C KIR Q + ++ +D + V F+ V GQ+ VF Sbjct: 293 NWIND----DKIIFPFSCQAKIRYRQIDIFCNIKYINDFLIKVLFDSPVSSVTPGQSIVF 348 Query: 368 YTSDSNEARVLGGGIISG 385 Y + LGGG+I Sbjct: 349 Y----SSKICLGGGVIQS 362 >gi|312891399|ref|ZP_07750916.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mucilaginibacter paludis DSM 18603] gi|311296093|gb|EFQ73245.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mucilaginibacter paludis DSM 18603] Length = 362 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 130/370 (35%), Positives = 203/370 (54%), Gaps = 18/370 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76 K R++VAMSGGVDSSV A +L GY+VIG+T++ ++ S + ++ CC+ + DA Sbjct: 3 KHGRILVAMSGGVDSSVAAVMLHEQGYEVIGLTMKTWDYASSGTNTKETGCCSLDSINDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + HY+ D F + VI F Y AG TP PCV CN +K+ LL +L Sbjct: 63 RALAVGYGFPHYILDIRSEFGDFVIDNFVDEYLAGRTPNPCVLCNTHIKWEALLKRADKL 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 + +ATGHY R + R ++ + +D +DQSY L+ +Q+ L RFPLG Sbjct: 123 DCEFIATGHYANIRQHD----NGRYVISKGLDQNKDQSYVLWGVSQRNLARTRFPLGSFA 178 Query: 197 KESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252 K +R +A++MG L++A+KS+S +ICFV Y ++ + G+ V +G + Sbjct: 179 KAEIRQMAKDMGQLELANKSESYEICFVPDNDYRSFLRHKVGDLEERVSGGNYVLTDGTV 238 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G+H G YTIGQR+GLG+A+G+P+FV + S+ V++G E LE ++R +N + Sbjct: 239 VGKHQGYPFYTIGQRKGLGIALGQPMFVTQILPESNTVVLGTAEDLERREAWVRNLNLI- 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + + + + KIR + + + + + VDF S G+A GQ+ VFY D Sbjct: 298 ---KYETITEPIEATTKIRYKDAGMLSNIVQIGEHMKVDFHHSVSGIAPGQSAVFYEGDD 354 Query: 373 NEARVLGGGI 382 +LGGG Sbjct: 355 ----LLGGGF 360 >gi|300774572|ref|ZP_07084435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chryseobacterium gleum ATCC 35910] gi|300506387|gb|EFK37522.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chryseobacterium gleum ATCC 35910] Length = 395 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 112/403 (27%), Positives = 193/403 (47%), Gaps = 47/403 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++VV +SGGVDSSV A LL++ G++V+ + ++ +N + C +D DA V Sbjct: 1 MKIVVGLSGGVDSSVTAYLLQQQGHEVVALFMRNWNDASVTLED-ECPWIEDSNDALMVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + V D E ++ ++ + Y G TP P V CNR VKF + LGAD Sbjct: 60 QKLGIPFQVIDMSELYKERIVDYMFAEYEKGRTPNPDVLCNREVKFDVFMKTAMSLGADK 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R ++GK + D +DQSYFL +Q QL FP+G++ K V Sbjct: 120 VATGHYARVTSTFDENGKEIFHLLAGKDNNKDQSYFLCQLSQDQLSKALFPIGELTKPQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248 R++A+E+GL ADK DSQ +CF+ + +++ EG+IV + Sbjct: 180 REIAKEIGLVTADKKDSQGLCFIGKVSLPQFLQQQLK--PNEGEIVEIFKDSPLFSEEKP 237 Query: 249 ---------------------NGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKN 286 +G+++G+H G +TIGQ +GLG+ E F++ D Sbjct: 238 EFSSKEEELEYLSRKINYKKSDGKVIGKHQGAQFFTIGQSKGLGIGGHKESCFIISRDME 297 Query: 287 SSRVIVG---PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341 ++ + VG L + + E++W+ + + + + + R Q + Sbjct: 298 NNILFVGEGSHFPGLHKKALKIDNSELHWVREDMKLQN-GESMEVMARFRYRQPLQKATL 356 Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + ++ Y++F++ + +A GQ +Y + ++G G+IS Sbjct: 357 YQFENAFYIEFDELQSAIAEGQFASWYIDE----ELIGSGVIS 395 >gi|209528181|ref|ZP_03276652.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arthrospira maxima CS-328] gi|209491390|gb|EDZ91774.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arthrospira maxima CS-328] Length = 359 Score = 417 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 138/375 (36%), Positives = 204/375 (54%), Gaps = 30/375 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 ++VV +SGGVDSS AA+L GY+V+G+TL L + KG CC+ V DA +C Sbjct: 2 QKIVVGLSGGVDSSAAAAILHHQGYEVVGLTLWLM------RGKGQCCSEGMV-DAAHIC 54 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGAD 139 + + + HY+ D + F+ +I Y AG TPLPC CNR VKF +L +L + Sbjct: 55 EQLGIPHYIVDSRDLFQTHIIDYLVEGYGAGITPLPCSQCNRAVKFGPMLGYASTELNIN 114 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R D R + R +D +DQSYFL+ TQ L + FPLG++ K Sbjct: 115 HIATGHYARVSYNSQCD---RHQLKRAVDRTKDQSYFLYDLTQDLLAGVVFPLGEVPKSE 171 Query: 200 VRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R +A + L ADK +SQD+C V+ G + + G +G+IV G++LG H+G Sbjct: 172 TRRIAAQYNLKTADKPESQDLCLVEANGSMRAFLDKYITG--KKGEIVDTEGRVLGEHDG 229 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I +YTIGQRRGLG++ EPL+V+ +D +RV+VG R+ + +R +NW+ Sbjct: 230 IHHYTIGQRRGLGISAAEPLYVLSIDPGRNRVVVGDRDRMTQTECTIRRVNWVSIA---- 285 Query: 319 AVVDGFKCFVKIRSSQDPVPVFV--------QRNDDGVYVDFEKSEVGVASGQACVFYTS 370 + + V+IR P+PV V + V + F++ G+ GQA V+Y+ Sbjct: 286 PPSEPIRAEVQIRYRSKPLPVTVVPLSSEADPQIGSRVRLIFDEPIFGITPGQAAVWYSE 345 Query: 371 DSNEARVLGGGIISG 385 D +LGGG+I Sbjct: 346 D----LLLGGGVIER 356 >gi|218682213|ref|ZP_03529814.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhizobium etli CIAT 894] Length = 294 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 189/294 (64%), Positives = 232/294 (78%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +N+LD DK P++ RVVVAMSGGVDSSVVA LLK+ GYDV+G+TLQLY+ A R GSCC Sbjct: 1 MNTLDFDKKPEETRVVVAMSGGVDSSVVAGLLKQQGYDVLGITLQLYDHGAAVHRAGSCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 AGQD+ DARRVC+T+ + HYV DYE+RFR VI PFA SY AGETP+PCV CN+TVKF+D Sbjct: 61 AGQDIDDARRVCETLGIPHYVLDYEKRFRETVINPFAESYVAGETPIPCVSCNQTVKFAD 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL+ ++LGAD LATGHYIRSR D RR + RP D +RDQSYFLFATTQ+Q+ L Sbjct: 121 LLATAKELGADALATGHYIRSRPNPLADKPGRRALFRPADADRDQSYFLFATTQEQIDYL 180 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 RFPLG + K R LA EMGL +A K+DSQDICFV QGKY D++ ++ AL G+IVHL Sbjct: 181 RFPLGGLPKAETRRLAEEMGLVVAKKADSQDICFVPQGKYSDIITKLKPNAALAGEIVHL 240 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302 +G++LG H GI+++TIGQRRG+G+A GEPL+VV+LD S RVIVGP+E+LE HR Sbjct: 241 DGRVLGTHEGILHFTIGQRRGIGIATGEPLYVVFLDARSRRVIVGPKEALETHR 294 >gi|256845062|ref|ZP_05550520.1| tRNA methyl transferase [Fusobacterium sp. 3_1_36A2] gi|256718621|gb|EEU32176.1| tRNA methyl transferase [Fusobacterium sp. 3_1_36A2] Length = 362 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 133/376 (35%), Positives = 199/376 (52%), Gaps = 30/376 (7%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L+ + N +++V VAMSGGVDSS VA LLK+ GYD+ GVT++ + + Sbjct: 15 LEFNSNNSNIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 DA++VCD + + HYV D F+ V+ F + Y G TP PC+ CNR +KF +L Sbjct: 64 ---DAKKVCDDLGIEHYVLDVRNEFKEKVMDYFVNEYMNGRTPNPCMVCNRHIKFGKMLD 120 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GA +ATGHY + + + + D +DQ YFL + +L + FP Sbjct: 121 FILSKGASFMATGHYTKLKNGL---------LSVGDDSNKDQVYFLSQIEKDRLSKIIFP 171 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNG 250 +GD++K +R+LA+++G+ + K DSQ+ICFV GK + G A G+IV NG Sbjct: 172 VGDLEKTKLRELAKQIGVRVYSKKDSQEICFVDDGKLKQFLIENTKGEAEKPGNIVDKNG 231 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 ILG+H G YTIGQR+GLG++ EPL+V+ DK ++ +IVG E L + +N Sbjct: 232 NILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDKKTNNIIVGENEDLFKDELIATRLNL 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYT 369 E +D +CF K RS ++++ + V F + + GQ VFY Sbjct: 292 FSVSSLES--LDNLECFAKTRSRDILHKCLLKKDGNNFQVKFIDNKVRAITPGQGIVFYN 349 Query: 370 SDSNEARVLGGGIISG 385 ++ N V+ GG I Sbjct: 350 NEGN---VIAGGFIER 362 >gi|19704100|ref|NP_603662.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|81479855|sp|Q8R5X3|MNMA1_FUSNN RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 gi|19714304|gb|AAL94961.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 362 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 134/376 (35%), Positives = 197/376 (52%), Gaps = 30/376 (7%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L D N ++RV VAMSGGVDSS VA LLK+ GYD+ GVT++ + + Sbjct: 15 LKFDSNNSNIRVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 DA++VCD + + HY+ D + F+ V+ F + Y G TP PC+ CNR +KF +L Sbjct: 64 ---DAKKVCDDLGIEHYILDVRDEFKEKVVDYFVNEYMNGRTPNPCMVCNRYIKFGKMLD 120 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 A +ATGHY + + + + D +DQ YFL + +L + FP Sbjct: 121 FILSKDASFMATGHYTKLKNGL---------LSVGDDSNKDQVYFLSQIEKNKLSKIIFP 171 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNG 250 +GD++K +R+LA ++G+ + K DSQ+ICFV GK + G A G+IV NG Sbjct: 172 VGDLEKTKLRELAEQLGVRVYSKKDSQEICFVDDGKLKQFLIENTKGKAEKPGNIVDKNG 231 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 ILG+H G YTIGQR+GLG++ EPL+V+ D+ ++ +IVG E L + +N Sbjct: 232 NILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDRKTNNIIVGQNEDLFRDELIATRLNL 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYT 369 E +D +CF K RS ++++ D V F + + GQ VFY Sbjct: 292 FSVSSLEG--LDNLECFAKTRSRDILHKCLLKKDGDNFQVKFIDNKVRAITPGQGIVFYN 349 Query: 370 SDSNEARVLGGGIISG 385 +D N V+ GG I Sbjct: 350 NDGN---VIAGGFIEK 362 >gi|238809910|dbj|BAH69700.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 382 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 114/382 (29%), Positives = 178/382 (46%), Gaps = 35/382 (9%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCA 69 N +V++ MSGGVDSSV A LL + GYDV G+ ++ ++S + G+ C Sbjct: 10 NMHKKKVILGMSGGVDSSVAAYLLLQQGYDVEGLFMRNWDSYVNNDFLGNENISQDICPQ 69 Query: 70 GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 QD DA V + + + + D+ + + + V F Y G TP P + CN+ +KF Sbjct: 70 EQDYQDALAVANKLGIKLHRVDFVKEYWDNVFENFIEEYKKGRTPNPDILCNKYIKFDAF 129 Query: 130 LSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 L +L AD +A GHY + + +GK + R D +DQ+YFL T QQL + Sbjct: 130 LKYAFEKLNADYIAMGHYAKVK-----NGK----LYRAKDQNKDQTYFLAQLTNQQLEKV 180 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 PL D KE +R +A+++ L A K DS ICF+ + + ++ A +G I+ + Sbjct: 181 LMPLADYPKEEIRKIAKKLDLATATKKDSTGICFIGERHFTKFLQNYIP--AQKGKILDI 238 Query: 249 -NGQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRES---LEVHRI 303 ++LG H+G YTIGQR+GL + E +V D ++ + P LE + + Sbjct: 239 KTKEVLGTHDGCFYYTIGQRKGLNLGGKSEAHYVCGHDVKNNIIYAAPASDPSYLESNML 298 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASG 362 + + K K R Q + V V+ ++ + V + V G Sbjct: 299 IASNL------CLNHHRFNKNKLSAKFRYRQKDLKVKVEFLENNKIKVFYPSKAQAVTPG 352 Query: 363 QACVFYTSDSNEARVLGGGIIS 384 Q V Y D + LGG II Sbjct: 353 QQVVLYDQD----KCLGGAIIE 370 >gi|34763143|ref|ZP_00144111.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887172|gb|EAA24275.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 362 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 134/376 (35%), Positives = 199/376 (52%), Gaps = 30/376 (7%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L+ + N +++V VAMSGGVDSS VA LLK+ GYD+ GVT++ + + Sbjct: 15 LEFNSNNSNIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 DA++VCD + + HYV D F+ V+ F + Y G TP PC+ CNR +KF +L Sbjct: 64 ---DAKKVCDDLGIEHYVLDVRNEFKEKVMDYFVNEYMNGRTPNPCMVCNRHIKFGKMLD 120 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GA +ATGHY + + + + D +DQ YFL + +L + FP Sbjct: 121 FILSKGASFMATGHYTKLKNGL---------LSVGDDSNKDQVYFLSQIEKDRLSKIIFP 171 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNG 250 +GD++K +R+LA++MG+ + K DSQ+ICFV GK + G A G+IV NG Sbjct: 172 VGDLEKTKLRELAKQMGVRVYSKKDSQEICFVDDGKLKQFLIENTKGEAEKPGNIVDKNG 231 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 ILG+H G YTIGQR+GLG++ EPL+V+ DK ++ +IVG E L + +N Sbjct: 232 NILGKHKGFSFYTIGQRKGLGISSEEPLYVLAFDKKTNNIIVGENEDLFKDELIATRLNL 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYT 369 E +D +CF K RS ++++ + V F + + GQ VFY Sbjct: 292 FSVSSLES--LDNLECFAKTRSRDILHKCLLKKDGNNFQVKFIDNKVRAITPGQGIVFYN 349 Query: 370 SDSNEARVLGGGIISG 385 ++ N V+ GG I Sbjct: 350 NEGN---VIAGGFIER 362 >gi|15606458|ref|NP_213838.1| hypothetical protein aq_1224 [Aquifex aeolicus VF5] gi|6226257|sp|O67274|MNMA_AQUAE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|2983672|gb|AAC07238.1| hypothetical protein aq_1224 [Aquifex aeolicus VF5] Length = 356 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 144/372 (38%), Positives = 212/372 (56%), Gaps = 20/372 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKASKRKGSCCAGQDVYDARR 78 MRV V MSGGVDSSV A LLK G+DVI VTL+ + + + ++ CC+ +DV DA R Sbjct: 1 MRVAVGMSGGVDSSVTALLLKEQGHDVIRVTLRFHTVEACEVNETHNVCCSPKDVQDASR 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137 V + + H VF +EE F++ VI F Y G TP PC CNR VK +Q+ Sbjct: 61 VAKRLGIPHLVFSWEEIFKSKVIDYFVEEYKRGRTPNPCALCNREVKTGFFARYLKQVAD 120 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D LATGHY + + +D K ++ RP D +RDQ+YFL ++ L L FPLG K Sbjct: 121 IDKLATGHYAK----IEEDKKYGLVIKRPKDRKRDQTYFLSLVRREDLELLTFPLGAYTK 176 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 E VR++A+ GL++A K DSQ++CF+ + ++ I G I H++G++LG H Sbjct: 177 EEVREIAKRYGLEVAQKRDSQEVCFLMGKSPGEYLEGILGK--QRGLIKHVSGKVLGEHE 234 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 G+ YTIGQRRGLG++ G+P++V+ +D ++ +IVG E L ++ ++EIN+ Sbjct: 235 GVYRYTIGQRRGLGISYGKPVYVIDIDAKTNTLIVGEEEYLYNDKLLVKEINFHV----- 289 Query: 318 DAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + +IR PVPV +++ ++G V F++ G+ GQ FY D Sbjct: 290 -PLEKWENVSAQIRYRHKPVPVERIEKTEEGFLVKFKEDVRGITPGQVVAFYDGDV---- 344 Query: 377 VLGGGIISGSKR 388 +LGGGII S + Sbjct: 345 LLGGGIIEESVK 356 >gi|291514578|emb|CBK63788.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Alistipes shahii WAL 8301] Length = 399 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 124/403 (30%), Positives = 186/403 (46%), Gaps = 45/403 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVV+ +SGGVDSSV A LLK G++V+G+ + ++ + G C D A V Sbjct: 3 RVVIGLSGGVDSSVAAWLLKEQGHEVVGLFMINWHDTTGTLE-GDCPWHDDRVFAELVAR 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ +V D +R V+ + Y G TP P V CNR +KF L +LGAD + Sbjct: 62 KLDIELHVVDLSADYRTRVVDYMFAEYERGRTPNPDVLCNREIKFDVFLREALKLGADYV 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R DG+ + D +DQSYFL +Q+QL FP+G + K VR Sbjct: 122 ATGHYCRKAEETLPDGRTIHKLLAGSDPNKDQSYFLCQLSQEQLSRALFPVGGLLKPEVR 181 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVV-------------------KRINAGIALE 242 +A E GL A + DSQ ICFV + + K + + E Sbjct: 182 RIAEEQGLATAKRKDSQGICFVGKVDLPTFLQQKLAPKKGNIHEILPTWPKYVREEVPAE 241 Query: 243 GDIVH--------------LNGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNS 287 G+ +G+ +G HNG YTIGQR+GLG+ E LF++ D Sbjct: 242 GEPTTGQLAALAEPWRYTVRDGKKIGEHNGAHYYTIGQRKGLGIGGRRESLFILATDTVQ 301 Query: 288 SRVIVGP---RESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ 342 + + VG L +++ EI+W+ E + V+IR Q + Sbjct: 302 NVIWVGEGDAHPGLWRPALHIAPGEIHWVNPA-RELTAGQSARFSVRIRYRQLLQGARLF 360 Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385 D+G Y+ F++ + G+ GQ +Y D +++G G+I G Sbjct: 361 VRDEGAYLVFDRPQRGITPGQFAAWYDGD----QLVGSGVIEG 399 >gi|253582177|ref|ZP_04859400.1| tRNA-specific 2-thiouridylase mnmA 1 [Fusobacterium varium ATCC 27725] gi|251835716|gb|EES64254.1| tRNA-specific 2-thiouridylase mnmA 1 [Fusobacterium varium ATCC 27725] Length = 362 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 139/375 (37%), Positives = 210/375 (56%), Gaps = 31/375 (8%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L D+N ++ + VAMSGGVDSS VA LLK+ GY+V G+T++ C + Sbjct: 15 LMYDENNQNTTIAVAMSGGVDSSTVAYLLKKQGYNVFGITMK-------------TCKPE 61 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D DA++VCD + + +Y+ D + F+ V+ F Y G+TP PC+ CN+ +K L+ Sbjct: 62 D-SDAKKVCDDLGIPYYLLDVTKEFKEKVMDYFVDEYLKGKTPNPCMVCNKYIKLGLLID 120 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 R GAD +ATGHY + + DG I+ D +DQ YFL ++ L L+FP Sbjct: 121 FARSKGADFMATGHYTQMK-----DG----ILSMGDDAGKDQVYFLSQMKKENLKYLKFP 171 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNG 250 +G+++K VR+LA+ +G+ + K DSQ+ICFV+ GK + + + G A G+IV NG Sbjct: 172 IGNLEKPKVRELAQLLGVRVYAKKDSQEICFVEDGKLKEFLMEMTDGKAGKPGNIVDTNG 231 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 +ILG+H G+ YTIGQR+GLG+A PL+V+ LD + V+VGP E L + IN Sbjct: 232 KILGKHKGLSFYTIGQRKGLGIAQENPLYVIELDSKRNCVVVGPNEMLFKDNLIAENINL 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSE-VGVASGQACVFY 368 + ++ +D +C+ K RS ++ +G + V+F ++ V GQ VFY Sbjct: 292 ISLNNIKE--LDEMECWAKTRSRDQLHKCKLEVLSNGNIKVNFIGNQVRAVTPGQGVVFY 349 Query: 369 TSDSNEARVLGGGII 383 D +VLG G I Sbjct: 350 DKD---HKVLGSGFI 361 >gi|78186206|ref|YP_374249.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobium luteolum DSM 273] gi|123583498|sp|Q3B625|MNMA_PELLD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|78166108|gb|ABB23206.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobium luteolum DSM 273] Length = 367 Score = 417 bits (1072), Expect = e-114, Method: Composition-based stats. Identities = 134/376 (35%), Positives = 194/376 (51%), Gaps = 27/376 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K +V+V +SGGVDSSV A +L R+GY+V+G+ L++ S Sbjct: 4 KKKKVIVGLSGGVDSSVAACMLVREGYEVLGLHLKVLQEGDGSTVLEPSPMTISSR---- 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + ++ + + RFRN V+ F Y A TP PC+ CN+T+K+ LL QLGA Sbjct: 60 --EEFHIPVFTLNLAARFRNEVMDYFKEEYLAARTPNPCMVCNKTIKWRGLLEGAAQLGA 117 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ATGHY R+ G R + +D ++DQSYFL+ Q++L PLG + K Sbjct: 118 DMVATGHYARTAFIDG-----RHRLFAGLDRKKDQSYFLWMLAQEELSRTILPLGGLTKP 172 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGR 255 VRDLAR GL A+K +SQ+ICFV Y ++ G+ G+I+ +GQ++G Sbjct: 173 EVRDLARSFGLTAAEKKESQEICFVPDDDYGSYLESAVPGLHRRVEGGEILDPSGQVIGH 232 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H G YTIGQRRGLG A GEPL+V +D + V GP+ +L + + +NW+G Sbjct: 233 HKGYPFYTIGQRRGLGTATGEPLYVTAIDPIGNLVHTGPKSALFSTSVEVSHLNWIGI-- 290 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-----VYVDFEKSEVGVASGQACVFYTS 370 D + KIR P + G + F++ + + GQA VFY Sbjct: 291 --DPPFAPMEATAKIRYRDHASPCTIIPLGPGPTGVTARIMFKEPKSALTPGQAAVFYRG 348 Query: 371 DSNEARVLGGGIISGS 386 + VLGGGII G+ Sbjct: 349 E----EVLGGGIIEGA 360 >gi|162447421|ref|YP_001620553.1| tRNA-specific 2-thiouridylase MnmA [Acholeplasma laidlawii PG-8A] gi|205810979|sp|A9NFP7|MNMA_ACHLI RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|161985528|gb|ABX81177.1| tRNA(5-methylaminomethyl-2-thiouridine)-methyltransferase [Acholeplasma laidlawii PG-8A] Length = 375 Score = 416 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 114/386 (29%), Positives = 181/386 (46%), Gaps = 33/386 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72 +V++ +SGGVDSSV A +L + GYDV V ++ ++S +G+ C +D Sbjct: 2 KKKVLIGLSGGVDSSVAALILLQQGYDVEAVFMRNWDSATNMDFRGNPTLYDETCEQEKD 61 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DA +V + + + + D+ + + V F Y TP P V CN +KF + Sbjct: 62 YQDALKVANKLGIKLHRVDFIHEYWDRVFSYFIDEYEKNRTPNPDVLCNNEIKFKAFIDY 121 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + + D +A GHY + D + R +D +DQ+YFL +QL ++ FP+ Sbjct: 122 SEKFKPDYIAMGHYAQI-----DHTGDEPKLIRAVDSNKDQTYFLSQLKTEQLRNVLFPI 176 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G++ K VR +A+E L ADK DS ICF+ + + + + A EGD+ L+G Sbjct: 177 GNLPKSEVRRIAKEHDLATADKKDSTGICFIGERHFNEFLLNYLP--AKEGDMRRLDGTF 234 Query: 253 LGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 + RH G++NYTIGQR+GLG+ + FVV D +++ + V P L + Sbjct: 235 IKRHFGLMNYTIGQRKGLGIGGTTDTTDAWFVVGKDLSTNTLYVEPGFEHPYLYSDEALI 294 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQA 364 E+ W A DG K K R Q+ V ++ +D+ V + + V GQ Sbjct: 295 TEVKW------RGAKRDG-KFTAKFRYRQEDQDVEIKWIDDETFKVFYPQKIRAVTPGQV 347 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSD 390 C Y + +G G IS Sbjct: 348 CAIYEDEV----CVGSGFISVVYNEG 369 >gi|171920850|ref|ZP_02932016.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178984|ref|ZP_02964738.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024081|ref|ZP_02996823.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518246|ref|ZP_03003776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524394|ref|ZP_03004420.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198273769|ref|ZP_03206303.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209554475|ref|YP_002284838.1| tRNA-specific 2-thiouridylase MnmA [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225550854|ref|ZP_03771803.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551575|ref|ZP_03772521.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|229487425|sp|B5ZBP8|MNMA_UREU1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|171903054|gb|EDT49343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209268|gb|EDU06311.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188019125|gb|EDU57165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998055|gb|EDU67152.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195660126|gb|EDX53506.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|198249524|gb|EDY74306.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|209541976|gb|ACI60205.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|225379390|gb|EEH01755.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225380008|gb|EEH02370.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 380 Score = 416 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 120/384 (31%), Positives = 195/384 (50%), Gaps = 35/384 (9%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-------SRKASKRKGSCCAGQD 72 RVV+ +SGGVDSSV A LLK+ GY+VIG+ + ++ +R++ K+ C + D Sbjct: 6 KKRVVIGLSGGVDSSVSALLLKQQGYEVIGLFMANWDTVANFENNRESDKKHQGCESELD 65 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DA+ V I + Y ++ + + N V F S Y TP P + CN+ +KF L+ Sbjct: 66 YQDAQAVAQKIGIPLYRVEFIKEYWNNVFEYFLSEYQKNRTPNPDILCNQFIKFDSFLNY 125 Query: 133 TR-QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + +L AD +A GHY + + + + D+ +DQ+YFL Q QL + FP Sbjct: 126 AKNELKADYIAMGHYAKVKH-----TNNLSYLLKATDVNKDQTYFLCNLKQTQLQNALFP 180 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250 +GD+ K+ VR +A+E GL A+K DS ICF+ + + ++ G+IV+ +N Sbjct: 181 IGDLTKQQVRTIAKEYGLVTANKKDSTGICFIGERNFKYFLENYIPN--QPGEIVNIVNN 238 Query: 251 QILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVGP----RESLEVHRIYL 305 QI+G H G + YTIGQR+GL M E +FV D N + V P + L ++ + Sbjct: 239 QIVGHHMGTMYYTIGQRKGLNLGGMNERMFVCEKDINKKIIYVSPLSLEDQYLISNQALV 298 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV---FVQRNDDGVYVDFEKSEVGVASG 362 +N++ + + V+ R Q+ V V N + V +++ + + G Sbjct: 299 ENMNFIEPYNPQIPI------SVRFRHRQNLVVVNSFLCIENTNNVLINY-EPAKAITPG 351 Query: 363 QACVFYTSDSNEARVLGGGIISGS 386 Q VFY +D +GGG+I+ + Sbjct: 352 QYAVFYQND----HCIGGGVIAQT 371 >gi|327273596|ref|XP_003221566.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like [Anolis carolinensis] Length = 417 Score = 416 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 115/388 (29%), Positives = 185/388 (47%), Gaps = 36/388 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVV A+SGGVDS+V A LL+R GYDV GV ++ ++ KG C A +D DA RVC+ Sbjct: 6 RVVCALSGGVDSAVAAVLLRRRGYDVTGVFMKNWDIAD---EKGVCSADKDCDDAYRVCE 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140 +N+ + Y + + N V + Y G TP P + CN+ +KF+ +LGAD Sbjct: 63 ILNIPFHQVSYVKEYWNDVFSYLLNEYELGRTPNPDIICNKYIKFNYFFHYAVDKLGADA 122 Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQ 182 +ATGHY R+ L + +++ I + + D +DQ++FL +Q Sbjct: 123 IATGHYARTSLGDNEVFQQKYIQRPKGLFRNRFEIRNTVKLLQAADQFKDQTFFLSQISQ 182 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 + L FPLGD+ K+ V+ +A E L + + +S ICF+ + + + Sbjct: 183 EALRRTIFPLGDLTKDFVKKIAAEHHLHHVLQRKESMGICFIGERNFEKFILEYLE--PR 240 Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RES 297 G+ V + + +++G H G YT+GQR + + + FVV + S V V P + Sbjct: 241 PGNFVSIEDDKVIGSHKGWFLYTLGQRARIS-GLKDAWFVVDKNTASGDVFVAPSTDHPA 299 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355 L + ++W+ + + + D +C + + VP + N DG V+V Sbjct: 300 LYRSLLRTNRVHWIAEEPPAELIRDKMMECNFRFQHQMALVPCTLTLNQDGTVWVTLVTP 359 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383 + GQ VFY D + LG G I Sbjct: 360 LRALTPGQFAVFYKGD----KCLGSGKI 383 >gi|314966673|gb|EFT10772.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL082PA2] gi|314981402|gb|EFT25496.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL110PA3] gi|315092068|gb|EFT64044.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL110PA4] gi|315103674|gb|EFT75650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL050PA2] gi|327327498|gb|EGE69274.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL103PA1] Length = 396 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 146/380 (38%), Positives = 204/380 (53%), Gaps = 21/380 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80 +V+ AMSGGVDS+V AA L G+DV GV L L N R + CC+ +D +DARR Sbjct: 32 KVLAAMSGGVDSAVAAARLVEAGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFDARRAA 91 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG D Sbjct: 92 DRLGIPFYVWDFSDRFVVEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYDA 151 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R+++ G + R +D +DQSY L Q QL FPLG+ K +V Sbjct: 152 VATGHYARTKVIDG-----VTKLYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKVNV 206 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R A +GL +ADK DS DICF+ G + + + +G+I +G ++G HNG Sbjct: 207 RQEAAALGLSVADKPDSNDICFIPDGDTPGWLS--DKIGSADGEIRDESGALVGHHNGYH 264 Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 ++TIGQRRGL + G+P +V+ ++ ++ V+VG E L VH I W Sbjct: 265 HFTIGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWCSGE-- 322 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 V+ + ++R+ DPVP + GV V+ E S GVA GQA VFY D Sbjct: 323 ---PVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAVVFYDGD----L 375 Query: 377 VLGGGIISGSKRSDAVEESL 396 V+G I G+ R+ E Sbjct: 376 VVGSATICGTDRAGVKAEQA 395 >gi|325103525|ref|YP_004273179.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pedobacter saltans DSM 12145] gi|324972373|gb|ADY51357.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pedobacter saltans DSM 12145] Length = 362 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 128/370 (34%), Positives = 197/370 (53%), Gaps = 18/370 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76 K R++VAMSGGVDSSV A +L GY+VIG+T++ ++ S A+ ++ CC+ + DA Sbjct: 3 KHGRILVAMSGGVDSSVAAVMLHEQGYEVIGLTMKTWDYASSGANSKETGCCSLDSINDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + HY+ D F + VI F Y AG TP PCV CN +K+ LL +L Sbjct: 63 RSLAVGYGFPHYILDIRNEFGDYVIDNFVDEYLAGRTPNPCVLCNTHIKWEALLKRADKL 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 + +ATGHY R R ++ + D +DQSY L+ +Q+ L +FPLG Sbjct: 123 DCEFIATGHYANIRQQD----NGRYVISKGRDENKDQSYVLWGVSQENLARTKFPLGSFT 178 Query: 197 KESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252 K +R +A +MG + +A KS+S +ICFV Y +K + + GD V ++G Sbjct: 179 KAEIRQMAFDMGQEDLAKKSESYEICFVPDNDYRSFLKHRVPELEADVAGGDFVLVDGTK 238 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G+H G YTIGQR+GLG+A+G+P+FV + S+ V++G L+ +R +N + Sbjct: 239 VGKHQGYPFYTIGQRKGLGIALGKPMFVTQILPESNTVVLGEEADLQRREATVRNLNLIK 298 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 ++ + + KIR + + D + V+F S G+A GQ+ VFY + Sbjct: 299 YA----SINEPLEAITKIRYKDPGTLSHIHQEGDIMKVNFHHSVTGIAPGQSAVFYEGND 354 Query: 373 NEARVLGGGI 382 +LGGG Sbjct: 355 ----LLGGGF 360 >gi|37520120|ref|NP_923497.1| tRNA-specific 2-thiouridylase MnmA [Gloeobacter violaceus PCC 7421] gi|73920124|sp|Q7MBC9|MNMA_GLOVI RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|35211112|dbj|BAC88492.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Gloeobacter violaceus PCC 7421] Length = 357 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 144/372 (38%), Positives = 210/372 (56%), Gaps = 24/372 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++V A+SGGVDSSV AAL+++ GY V GVTL L + KGSCC+ + DA RVC+ Sbjct: 6 KIVAALSGGVDSSVAAALVRKQGYRVCGVTLWLM------RGKGSCCS-DGMKDAARVCE 58 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140 +++ H++ D ++F ++ Y G TPLPC CN+ +KF LL R +LG Sbjct: 59 QLDIPHHIVDIRQQFEETIVDFLVEGYREGITPLPCSRCNKELKFGLLLEYARRKLGIGT 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R+ D R + R +D +DQSYFL+ +Q+QL FPLG+M K+ Sbjct: 119 VATGHYARTGF---DGQTGRHWLARAVDRTKDQSYFLYDLSQEQLASAVFPLGEMTKDQT 175 Query: 201 RDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R LA E+GL +A K +S D+C V+ G + + G+IV +G+ILG H+G Sbjct: 176 RTLAAELGLSVAHKPESMDLCLVEAAGSMRNFLNAHID--TRRGEIVDTSGKILGEHDGA 233 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YT+GQRRGLGVA PL+VV +D ++RV+VG RE + ++NW+ E Sbjct: 234 HHYTVGQRRGLGVAAPYPLYVVAVDAANNRVVVGAREEATACECTVGQVNWVSMAEPEAP 293 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEK-SEVGVASGQACVFYTSDSNEARV 377 + + V++R PV + G + F+ + ++ GQA V+Y + RV Sbjct: 294 I----QAEVQVRYRSQPVQATIIPLPARGARIAFDDAPQFAISPGQAAVWYAGE----RV 345 Query: 378 LGGGIISGSKRS 389 LGGGII S RS Sbjct: 346 LGGGIILASGRS 357 >gi|269102223|ref|ZP_06154920.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] gi|268162121|gb|EEZ40617.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Photobacterium damselae subsp. damselae CIP 102761] Length = 333 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 100/346 (28%), Positives = 169/346 (48%), Gaps = 29/346 (8%) Query: 52 LQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAG 111 ++ + + C A D+ DA+ VCD + + + ++ + + V F + Y AG Sbjct: 1 MKNWEEDDNEE---YCSAAADLADAQAVCDKLGIPLHTINFAAEYWDNVFEYFLAEYKAG 57 Query: 112 ETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170 TP P + CN+ +KF L + L AD +A GHY R M R +D Sbjct: 58 RTPNPDILCNKEIKFKAFLEFADEVLEADYIAMGHYTRRTF---PQAGEEPQMLRGLDNN 114 Query: 171 RDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD 230 +DQSYFL+ + +Q+ FP+G+++K VR +A E GL A K DS ICF+ + K+ + Sbjct: 115 KDQSYFLYTLSHEQIARSLFPVGELEKPEVRRIAEEQGLVTAKKKDSTGICFIGERKFTE 174 Query: 231 VVKRINAGIALEGDIVHLN-GQILGRHNGIINYTIGQRRGL-------GVAMGEPLFVVY 282 + + A G+IV + G ++G H G++ +T+GQR+GL G +P +VV Sbjct: 175 FLGKYLP--AQPGNIVTADEGTVIGEHQGLMYHTLGQRKGLHIGGQKGGNGHEDPWYVVD 232 Query: 283 LDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339 D + ++V L+ + + +++W+ + + C VK R Q +P Sbjct: 233 KDVKRNELVVAQGHDHPRLKSNGLIASQLHWVD----REPIRQPVTCTVKTRYRQQDIPC 288 Query: 340 FVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + DD + V F++ ++ V GQ+ VFY + +GGGII Sbjct: 289 TIIPIDDENIKVIFDEPQIAVTPGQSAVFYNGEV----CMGGGIIE 330 >gi|254303789|ref|ZP_04971147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323981|gb|EDK89231.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 362 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 133/376 (35%), Positives = 198/376 (52%), Gaps = 30/376 (7%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L+ D N ++R+ VAMSGGVDSS VA LLK+ GYD+ GVT++ + + Sbjct: 15 LEFDSNNSNIRIGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 DA++VCD + + HYV D + F+ V+ F Y G TP PC+ CNR +KF +L Sbjct: 64 ---DAKKVCDDLGIEHYVLDVRDEFKEKVMDYFVDEYMNGRTPNPCMVCNRHIKFGKMLD 120 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GA+ +ATGHY + + + + D +DQ YFL + +L + FP Sbjct: 121 FILSKGANFMATGHYTKLKNGL---------LSVGDDSNKDQVYFLSQIEKDRLSKIIFP 171 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNG 250 +GD++K +R+ A++MG+ + K DSQ+ICFV GK + G A G+IV NG Sbjct: 172 VGDLEKPKLREFAQQMGVRVYSKKDSQEICFVDDGKLKQFLIENTKGKAEKPGNIVDKNG 231 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 ILG+H G YTIGQR+GLG++ EPL+V+ D+ ++ +IVG + L + +N Sbjct: 232 NILGKHRGFSFYTIGQRKGLGISSEEPLYVLAFDRETNNIIVGENKDLFKDELTATRLNL 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYT 369 + +D +CF K RS ++++ D V F + V GQ VFY Sbjct: 292 FSVSSLDS--LDNLECFAKTRSRDILHKCLLKKDGDNFQVKFIDNKVRAVTPGQGIVFYN 349 Query: 370 SDSNEARVLGGGIISG 385 + N V+ GG I Sbjct: 350 IEGN---VIAGGFIEK 362 >gi|308189959|ref|YP_003922890.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma fermentans JER] gi|319777241|ref|YP_004136892.1| tRNA-specific 2-thiouridylase mnma [Mycoplasma fermentans M64] gi|307624701|gb|ADN69006.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma fermentans JER] gi|318038316|gb|ADV34515.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma fermentans M64] Length = 372 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 113/380 (29%), Positives = 177/380 (46%), Gaps = 35/380 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQ 71 +V++ MSGGVDSSV A LL + GYDV G+ ++ ++S + G+ C Q Sbjct: 2 HKKKVILGMSGGVDSSVAAYLLLQQGYDVEGLFMRNWDSYVNNDFLGNENISQDICPQEQ 61 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D DA V + + + + D+ + + + V F Y G TP P + CN+ +KF L Sbjct: 62 DYQDALAVANKLGIKLHRVDFVKEYWDNVFENFIEEYKKGRTPNPDILCNKYIKFDAFLK 121 Query: 132 VT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 +L AD +A GHY + + +GK + R D +DQ+YFL T QQL + Sbjct: 122 YAFEKLNADYIAMGHYAKVK-----NGK----LYRAKDQNKDQTYFLAQLTNQQLEKVLM 172 Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-N 249 PL D KE +R +A+++ L A K DS ICF+ + + ++ A +G I+ + Sbjct: 173 PLADYPKEEIRKIAKKLDLATATKKDSTGICFIGERHFTKFLQNYIP--AQKGKILDIKT 230 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRES---LEVHRIYL 305 ++LG H+G YTIGQR+GL + E +V D ++ + P LE + + Sbjct: 231 KEVLGTHDGCFYYTIGQRKGLNLGGKSEAHYVCGHDVKNNIIYAAPASDPSYLESNMLIA 290 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQA 364 + + K K R Q + V V+ ++ + V + V GQ Sbjct: 291 SNL------CLNHHRFNKNKLSAKFRYRQKDLKVKVEFLENNKIKVFYPSKAQAVTPGQQ 344 Query: 365 CVFYTSDSNEARVLGGGIIS 384 V Y D + LGG II Sbjct: 345 VVLYDQD----KCLGGAIIE 360 >gi|256027773|ref|ZP_05441607.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Fusobacterium sp. D11] gi|289765727|ref|ZP_06525105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. D11] gi|289717282|gb|EFD81294.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. D11] Length = 362 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 133/376 (35%), Positives = 201/376 (53%), Gaps = 30/376 (7%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 ++ D + ++++V VAMSGGVDSS VA LLK+ GYD+ GVT++ + + Sbjct: 15 IEFDSSKRNIKVGVAMSGGVDSSTVAYLLKQQGYDIFGVTMKTFKDEDS----------- 63 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 DA++VCD + + HYV D + F+ V+ F S Y G TP PC+ CNR +KF +L Sbjct: 64 ---DAKKVCDDLGIEHYVLDVRDEFKKKVVDYFVSEYMNGRTPNPCMVCNRHIKFGKMLD 120 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 GA +ATGHY + + + + D +DQ YFL + +L + FP Sbjct: 121 FILSKGASFMATGHYTKLKNGL---------LSVGDDSNKDQVYFLSQIQKDRLNKIIFP 171 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-GDIVHLNG 250 +GD++K +R+LA ++G+ + K DSQ+ICFV GK + + G A + G+IV +G Sbjct: 172 VGDLEKSKLRELAEQLGVRVYSKKDSQEICFVDDGKLKEFLIENTKGKAEKTGNIVDKDG 231 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 ILGRH G YTIGQR+GLG++ EPL+V+ D+ ++ +IVG E L + +N Sbjct: 232 NILGRHKGFSFYTIGQRKGLGISSEEPLYVLAFDRETNNIIVGKNEDLFKDELIATRLNL 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYT 369 E +D +CF K RS ++++ D V F + + GQ VFY Sbjct: 292 FLVSSLEG--LDNLECFAKTRSRDILHKCLLKKDGDNFQVKFIDNKVRAITPGQGIVFYN 349 Query: 370 SDSNEARVLGGGIISG 385 + N V+ GG I Sbjct: 350 DEGN---VIAGGFIER 362 >gi|42521055|ref|NP_966970.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Wolbachia endosymbiont of Drosophila melanogaster] gi|81652123|sp|Q73FR5|MNMA_WOLPM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|42410796|gb|AAS14904.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Wolbachia endosymbiont of Drosophila melanogaster] Length = 370 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 179/386 (46%), Positives = 243/386 (62%), Gaps = 19/386 (4%) Query: 3 VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKAS 61 + + + L DK P + VVAMSGGVDSSV AALL GY V+GVTLQLY A+ Sbjct: 1 MLKEFEIEPLLKDKAPHQTKAVVAMSGGVDSSVAAALLHNLGYKVVGVTLQLYGTDGNAN 60 Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 RKG+CCAGQD+YDA+RV +++ HY+ +YEE F+ VI FAS+Y GETP+PCV CN Sbjct: 61 ARKGACCAGQDIYDAKRVAESVGFPHYLLNYEEIFKKEVIEDFASTYMRGETPIPCVRCN 120 Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181 +TVKF DLL VT+ LGADVL TGHY+R G+ +CR +D +DQSYFLFATT Sbjct: 121 QTVKFRDLLQVTKNLGADVLVTGHYVRRLEKNGE-----VKLCRSIDKSKDQSYFLFATT 175 Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 Q+QL LRFPLG K +R LA+ L I++K DSQDICFV + Y + ++ Sbjct: 176 QEQLKLLRFPLGGFYKSDIRKLAKYFSLQISEKQDSQDICFVSES-YSKTIAKLAPQSVQ 234 Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH 301 +G IV +NG++LG H+GI+N+T+GQR+GLG+A EPL+V+ ++ ++ VIVGP L Sbjct: 235 KGKIVDVNGKVLGEHSGIVNFTVGQRKGLGIAHNEPLYVIKINTENNEVIVGPINVLMQK 294 Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND--DGVYVDFEKSEVGV 359 +I ++E+NWL + +G + VK+RSS + D + V G+ Sbjct: 295 KILIKELNWL------EQPKEGMEVTVKLRSSHVGSLATIHSTDEKNKACVILNDDYFGI 348 Query: 360 ASGQACVFYTSDSNEARVLGGGIISG 385 + GQACV Y + +V+GGG I Sbjct: 349 SPGQACVAYKDE----QVIGGGWICS 370 >gi|298245195|ref|ZP_06969001.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Ktedonobacter racemifer DSM 44963] gi|297552676|gb|EFH86541.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Ktedonobacter racemifer DSM 44963] Length = 391 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 139/397 (35%), Positives = 201/397 (50%), Gaps = 42/397 (10%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS---------CCAGQD 72 R+VVAMSGGVDSSV AALLK G++VIG+ L+L++ + + CC+ + Sbjct: 3 RIVVAMSGGVDSSVAAALLKEQGHEVIGMMLRLWSEPGVIEAEDDGVERVVQNKCCSLES 62 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 V DARRV +++ Y+ + E+ F+ ++ F Y AG TP PC+ CNR ++F+ LL+ Sbjct: 63 VDDARRVARMLDIPFYLVNVEQEFKERIVDSFYEDYVAGRTPNPCLTCNRHIRFTVLLNK 122 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 L AD LATGHY+R + +R R +D ++DQSY L Q QL FPL Sbjct: 123 ALALEADYLATGHYVRVDDHPQTGRRRLRR---GLDPDKDQSYVLHVLNQHQLSHACFPL 179 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAG-------------- 238 G K VR +A E G+++A K++SQ+ICFV Q Y + R A Sbjct: 180 GGYTKPQVRAMAAERGMNVATKAESQEICFVAQNDYRGFIDRYAASKQEDDALVPAGVTA 239 Query: 239 ----------IALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSS 288 I G I G +LGRH G+ YTIGQR+GLG+ PL V+ LD + + Sbjct: 240 TATAAQPLITIPRPGPIYDQQGTLLGRHRGLAYYTIGQRKGLGLTSPAPLHVLKLDADQN 299 Query: 289 RVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-G 347 +IVGP +L+ + ++++ D F+ V++R P V + Sbjct: 300 ALIVGPATALDQQEFTIGKMHYTTG----DVPTAPFEALVRVRYKAPEQPALVTPLEGQR 355 Query: 348 VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 V + + GQA V Y + + VLGGGII Sbjct: 356 ARVQLVHPQRAITPGQAAVLYGGE-DGDEVLGGGIIE 391 >gi|317125511|ref|YP_004099623.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Intrasporangium calvum DSM 43043] gi|315589599|gb|ADU48896.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Intrasporangium calvum DSM 43043] Length = 365 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 143/372 (38%), Positives = 194/372 (52%), Gaps = 16/372 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79 MRVV AMSGGVDS+V AA + G+DV+GV L L S + CC +D DARRV Sbjct: 1 MRVVAAMSGGVDSAVAAARMLDAGHDVVGVHLALSQSAATLRESARGCCTIEDAGDARRV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + YV+D ERFR V+ F + YA G TP PC+ CN +KF+ LL LG D Sbjct: 61 ADVLGIPFYVWDMAERFRRDVVEDFTAEYARGRTPNPCLRCNEKIKFAALLDKAIALGFD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + G G RR + R +D +DQSY L +QL FPLGD K Sbjct: 121 AVATGHYAQVVEVPGVGGGVRRELHRAVDSAKDQSYVLGVLDAEQLARAFFPLGDTTKPQ 180 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R+ A E G +A K DS DICF+ G + R GDIV +G +LGRH G Sbjct: 181 IREEAAERGFFVARKPDSHDICFIPDGDTRAWLGRALGEA--PGDIVDTDGAVLGRHAGA 238 Query: 260 INYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 YT+GQR+GLG+ G+P +VV + ++++V+VG + L V I W G Sbjct: 239 FGYTVGQRKGLGLSRPAPDGQPRYVVEVRTDTNQVVVGTADLLGVDAITGDHARWCG--- 295 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 A + ++R+ VP + D V V ++ GVA GQ+ V Y Sbjct: 296 --PAPAGVVRVGAQVRAHGAEVPATAWADGDRVEVRLDERIRGVAPGQSVVLYEG----T 349 Query: 376 RVLGGGIISGSK 387 RV+G I+ ++ Sbjct: 350 RVVGSATIASAR 361 >gi|291320347|ref|YP_003515609.1| tRNA(5 methylaminomethyl 2 thiouridylate) methyltransferase [Mycoplasma agalactiae] gi|290752680|emb|CBH40653.1| TRNA(5 methylaminomethyl 2 thiouridylate) methyltransferase [Mycoplasma agalactiae] Length = 374 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 115/381 (30%), Positives = 172/381 (45%), Gaps = 36/381 (9%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72 +V++ MSGGVDSSV A LL + G++V G+ ++ ++S + G+ C QD Sbjct: 4 KKKVILGMSGGVDSSVCAYLLLKQGFEVEGLFMRNWDSMLNNDFLGNENISQDICPQEQD 63 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DA +V + + + + D+ + N V F S Y G TP P + CN+ +KF Sbjct: 64 YQDALKVANKLGIKLHRVDFVNEYWNDVFKTFISEYEHGRTPNPDILCNKYIKFKAFSDY 123 Query: 133 T-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +A GHY R DG+ + R DL +DQ+YFL + +QL + P Sbjct: 124 AFNNLGADYIAMGHYARV-----TDGR----LYRAKDLNKDQTYFLAQLSHEQLEKVLMP 174 Query: 192 LGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-N 249 L D KE VR +A E L A K DS ICF+ + K+ ++ GDIV + Sbjct: 175 LADFTSKEEVRKIAEEQDLITASKKDSTGICFIGERKFTKFLQNYIP--MQPGDIVDIKT 232 Query: 250 GQILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVGPRESLE---VHRIYL 305 + +G+H G YTIGQR+GL EP +V + + + V P L + Sbjct: 233 NKKIGKHEGCFYYTIGQRKGLNLGGQAEPYYVCGHNVKENILYVSPSSDLSYLTSDALLA 292 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364 + D D K R Q +PV ++ + + V + V GQ Sbjct: 293 TGLTLNHDDF------DLNNLSAKFRYRQKDIPVTIELLPNNAIKVYYPSEAQAVTPGQQ 346 Query: 365 CVFYTSDSNEARVLGGGIISG 385 V Y + + LGG +I Sbjct: 347 VVLYDGE----KCLGGAVIEK 363 >gi|327405404|ref|YP_004346242.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fluviicola taffensis DSM 16823] gi|327320912|gb|AEA45404.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fluviicola taffensis DSM 16823] Length = 392 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 125/402 (31%), Positives = 194/402 (48%), Gaps = 50/402 (12%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RVVV +SGGVDSSV A LL+++GY+VIG+ ++ ++ + C D DA + Sbjct: 2 KRVVVGLSGGVDSSVTAHLLQQEGYEVIGLFMRNWHDETVT-LSNDCPWIDDSNDALLIA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + V D + ++ ++ + Y AG TP P V CNR +KF L +LGAD Sbjct: 61 EQLGIPFQVLDLSKEYKERIVDYMFAEYEAGRTPNPDVLCNREIKFDVFLKAAMELGADF 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R +DG + +D +DQSYFL +Q QL FP+G+++K V Sbjct: 121 VATGHYCRK--ITTEDG--IHHLLTGLDPNKDQSYFLCQLSQDQLSKALFPIGNLQKSEV 176 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN----------- 249 R +A+E+GL ADK DSQ +CFV + + +++ G I+ +N Sbjct: 177 RAIAKEIGLVTADKKDSQGLCFVGKISLPEFLQQKLE--VKYGKIIEINELDNQFLNYST 234 Query: 250 ---------------------GQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNS 287 G + +H G YTIGQR+GL + P FV+ +D + Sbjct: 235 IPVNLNNVIELSKEFIYSPDMGIEVEKHIGAHYYTIGQRKGLNIGGRPNPSFVIGIDTTT 294 Query: 288 SRVIVGPRESL-----EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ 342 + V G ++ +I E++W+ FE + D + ++IR Q + Sbjct: 295 NTVYSGQKDEHPGLNKWALKIETSEMHWINPT-FEMNIGDSKEFDIRIRYRQSFQKGTLT 353 Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 R DG Y+ F + + G+ GQ FY D ++G GIIS Sbjct: 354 RLQDGFYILFNQKQRGITPGQFAAFYNED----ELIGSGIIS 391 >gi|24214187|ref|NP_711668.1| tRNA-specific 2-thiouridylase MnmA [Leptospira interrogans serovar Lai str. 56601] gi|59799068|sp|Q8F625|MNMA_LEPIN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|24195088|gb|AAN48686.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Leptospira interrogans serovar Lai str. 56601] Length = 375 Score = 415 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 138/384 (35%), Positives = 213/384 (55%), Gaps = 13/384 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDA 76 +++VAMSGGVDS+V A LL DGY+VIGV L+ + K SCC+ +D+ DA Sbjct: 2 SKGKIIVAMSGGVDSAVTAGLLMEDGYEVIGVNLRTWEYEAPACDTTKKSCCSPEDIRDA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R V ++ + YV E+ F+ VI F Y G+TP PCV+CN VKF L + L Sbjct: 62 RDVGISLKIPFYVIKMEKVFQEKVIDRFIEDYQHGKTPNPCVECNTFVKFGALFEKAKAL 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 G D +ATGHY R R + +D+ ++Q+Y+L+ +Q+ L ++ FPLG+M Sbjct: 122 GIDKIATGHYARIARN-----GERYAIANGIDVGKNQAYYLYGLSQENLKNVIFPLGEMT 176 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +AR MGL +ADKS+SQ+ICF+ + Y +++ N G +G+I+G+H Sbjct: 177 KPEVRQIARRMGLPVADKSESQEICFIPENDYRKFLEKKN-VEFTPGFFKLKDGRIVGKH 235 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G N+TIGQR+GLG+A PL+V+ ++ + VI+G + ++N+ G Sbjct: 236 KGRENFTIGQRKGLGIAWKNPLYVISIE-DDGSVILGEENETYNESFSVIDLNFQGLAPL 294 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + +C V++R P+ + + +G+ V + GV GQ+ VFY DS+ Sbjct: 295 NEG--ESLECRVQVRYRHIPIRCKITKMKEGLIVHPLEDVRGVTPGQSAVFYPLDSD--Y 350 Query: 377 VLGGGIISGSKRSDAVEESLLSVI 400 +L GGIIS + E +SV+ Sbjct: 351 LLLGGIISKGSIQMRIVEPAISVL 374 >gi|297565299|ref|YP_003684271.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Meiothermus silvanus DSM 9946] gi|296849748|gb|ADH62763.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Meiothermus silvanus DSM 9946] Length = 371 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 144/370 (38%), Positives = 205/370 (55%), Gaps = 25/370 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RV+VAMSGGVDSSV AALLK GY+VIG ++ + K +CC+ Y+ARR Sbjct: 4 SKGRVLVAMSGGVDSSVSAALLKAQGYEVIGAMMRFWPDNKKDDCFETCCSPDAAYEARR 63 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + V Y+ DY E F+ +I PF + YAAGETP PCV+CN VKF LL R LG Sbjct: 64 VADIVGVPFYLLDYREEFQEKIIDPFIAGYAAGETPNPCVNCNTRVKFDSLLKKARMLGC 123 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY+ + R D ++DQ+YFL+ T ++ + + FP+G ++K Sbjct: 124 DFVATGHYVIREGNA---------LFRG-DPKKDQTYFLWGTPKEAIPHMMFPVGHLEKP 173 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR +A + GL A K +SQ+ICFV QG + + N A G +V L G+++G H Sbjct: 174 QVRAIAEQYGLPTAKKPESQNICFV-QGDLKEFLS--NHLTARPGPLVDLETGEVIGEHA 230 Query: 258 GIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G YT+GQ++GLG+ +VV ++ ++ VIVGPRE+ + RE+N L + Sbjct: 231 GAQFYTVGQKKGLGLFKTHLERYVVRVNPATNEVIVGPREACLWSGLEAREVNLLVEPEE 290 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEA 375 ++ V++R PV V+R D G+ V + + V GQ+ V Y D Sbjct: 291 LPETLE-----VQVRYRTKPVLGKVERLGDGGMTVRLAEPQFAVTPGQSMVLYQGD---- 341 Query: 376 RVLGGGIISG 385 R+LGGG I Sbjct: 342 RLLGGGFIQR 351 >gi|145628472|ref|ZP_01784272.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae 22.1-21] gi|144978942|gb|EDJ88628.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Haemophilus influenzae 22.1-21] Length = 328 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 106/343 (30%), Positives = 181/343 (52%), Gaps = 28/343 (8%) Query: 52 LQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAG 111 ++ + + C A D+ DA+ VCD + + + ++ + + V F + Y AG Sbjct: 1 MKNWEEDDDTD---YCTAAADLADAQAVCDKLGIKLHKINFAAEYWDNVFEHFLTEYKAG 57 Query: 112 ETPLPCVDCNRTVKFSDLLSV-TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170 TP P + CN+ +KF L LGAD +ATGHY+R GD+ + + R +D Sbjct: 58 RTPNPDILCNKEIKFKAFLEYAAEDLGADYIATGHYVRRA---GDNENAK--LLRGLDPN 112 Query: 171 RDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFD 230 +DQSYFL+ + +Q+ FP+G+++K VR +A ++GL A K DS ICF+ + K+ D Sbjct: 113 KDQSYFLYTLSHKQVGQSLFPVGEIEKPIVRAIAEDLGLITAKKKDSTGICFIGERKFKD 172 Query: 231 VVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVA-----MGEPLFVVYLDK 285 + R A G+I ++ +I+GRH+G++ +T+GQR+GLG+ E +VV D Sbjct: 173 FLARYLP--AQPGNIRTVDDEIIGRHDGLMYHTLGQRKGLGIGGLKNAGDEAWYVVDKDV 230 Query: 286 NSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ 342 ++ +IV L + +++W+ + + + +C VK R Q +P ++ Sbjct: 231 ENNELIVAQGHDHPRLFSKGLIASQLHWVD----REPIRESLRCTVKTRYRQQDIPCVIE 286 Query: 343 RNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 DD + V F++ + V GQ+ VFY ++ LGGGII+ Sbjct: 287 PIDDETIRVIFDEPQSAVTPGQSAVFYLGEA----CLGGGIIA 325 >gi|298373676|ref|ZP_06983665.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroidetes oral taxon 274 str. F0058] gi|298274728|gb|EFI16280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroidetes oral taxon 274 str. F0058] Length = 361 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 124/371 (33%), Positives = 205/371 (55%), Gaps = 19/371 (5%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDAR 77 +V+++MSGG+DS+V A LL R GYD++GVT + ++S +R+ CC + +AR Sbjct: 4 KKKVLLSMSGGIDSTVAAILLMRQGYDLVGVTYRTWDSVSQGCFEREKGCCTINAIMEAR 63 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 R+ + H+ D ++FR++VI F Y AG TP PCV CN +K+ +++ + + Sbjct: 64 RMAAEMGFPHHFLDIRQKFRDSVIKNFIDEYLAGRTPNPCVVCNAEIKWGEVVKLADSMD 123 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D +ATGHY R G + + + +D +DQ+YFL+ Q L FPLG++ K Sbjct: 124 CDYIATGHYARIESLNG-----KYYLKKGVDTNKDQTYFLWRLPQSVLRRTIFPLGELTK 178 Query: 198 ESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINA---GIALEGDIVHLNGQIL 253 VR +A + G + ++ K++SQ+ICFV Y + ++ ++ I +G+ V + G IL Sbjct: 179 PEVRQIAFDAGYEKLSKKAESQEICFVPDNDYREFLRAESSAYNEIGTDGNFVDVAGNIL 238 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 GRH G NYT+GQR+GLG+A+G P+FV + + V++ R+ L + + N++ Sbjct: 239 GRHKGYPNYTVGQRKGLGIALGRPMFVSQIRPERNEVVLADRDDLYTKTLTATDCNFVD- 297 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 D + DG + +IR + + V V F+K VA+GQ+ VFY + Sbjct: 298 ---RDTIHDGLEVDARIRYKSPATSAKIVLEGNKVRVSFDKEVWAVAAGQSVVFYKDN-- 352 Query: 374 EARVLGGGIIS 384 ++GGG+I Sbjct: 353 --LIIGGGVIE 361 >gi|86608667|ref|YP_477429.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. JA-2-3B'a(2-13)] gi|123502696|sp|Q2JM78|MNMA_SYNJB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|86557209|gb|ABD02166.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)] Length = 368 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 136/350 (38%), Positives = 193/350 (55%), Gaps = 19/350 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+V A+SGGVDSS VAALL+ GY V GVTL L + KG CC + + DA VC+ Sbjct: 19 RIVAALSGGVDSSTVAALLQEQGYAVEGVTLWLM------RGKGQCCT-EGLVDAAAVCE 71 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + H+V D E F+ ++ + YA G TPLPC CN+ VKF LL+ R+ LG Sbjct: 72 QLGIPHHVVDSRELFQANIVDYLVAGYAEGITPLPCSQCNKLVKFGPLLAYAREKLGISQ 131 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R R + R +D ++DQSYFL+ +Q+ L FPLG+ K Sbjct: 132 MATGHYARVRFNA---ELGRYQLLRAVDRQKDQSYFLYDLSQEHLAHSLFPLGEYTKAQT 188 Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R LA GL ADK +SQD+C ++ G + + G+IV G++LG H GI Sbjct: 189 RQLAARYGLVTADKPESQDLCLIETYGSMRSFLDQYLGQ--RPGEIVDTQGRVLGSHEGI 246 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YT+GQR+GLG+A PL+VV +D +RV+VG RE ++ ++NW+ A Sbjct: 247 HHYTVGQRKGLGIASSRPLYVVRIDAAMNRVVVGEREEATQAEAWVSQVNWVSI----PA 302 Query: 320 VVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFY 368 V++R PVP + + + V + F + + GV GQA V+Y Sbjct: 303 PTGSLAVEVQVRYRTPPVPAMVIPESPERVKLQFAEPQFGVTPGQAAVWY 352 >gi|99035878|ref|ZP_01314930.1| hypothetical protein Wendoof_01000225 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 370 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 178/386 (46%), Positives = 243/386 (62%), Gaps = 19/386 (4%) Query: 3 VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKAS 61 + + + L DK P + VVAMSGGVDSSV AALL GY V+G+TLQLY A+ Sbjct: 1 MLKEFEIEPLLKDKAPHQTKAVVAMSGGVDSSVAAALLHNLGYKVVGMTLQLYGTDGNAN 60 Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 RKG+CCAGQD+YDA+RV +++ HY+ +YEE F+ VI FAS+Y GETP+PCV CN Sbjct: 61 ARKGACCAGQDIYDAKRVAESVGFPHYILNYEEIFKKEVIEDFASTYMRGETPIPCVRCN 120 Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181 +TVKF DLL VT+ LGADVL TGHY+R G+ +CR +D +DQSYFLFATT Sbjct: 121 QTVKFRDLLQVTKNLGADVLVTGHYVRRLEKNGE-----VKLCRSIDKSKDQSYFLFATT 175 Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 Q+QL LRFPLG K +R LA+ L I++K DSQDICFV + Y + ++ Sbjct: 176 QEQLKLLRFPLGGFYKSDIRKLAKYFSLQISEKQDSQDICFVSES-YSKTIAKLAPQSVQ 234 Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH 301 +G IV +NG++LG H+GI+N+T+GQR+GLG+A EPL+V+ ++ ++ VIVGP L Sbjct: 235 KGKIVDVNGKVLGEHSGIVNFTVGQRKGLGIAHNEPLYVIKINTENNEVIVGPINVLMQK 294 Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND--DGVYVDFEKSEVGV 359 +I ++E+NWL + +G + VK+RSS + D + V G+ Sbjct: 295 KILIKELNWL------EQPKEGMEVTVKLRSSHVGSLATIHSTDEKNKACVILNDDYFGI 348 Query: 360 ASGQACVFYTSDSNEARVLGGGIISG 385 + GQACV Y + +V+GGG I Sbjct: 349 SPGQACVAYKDE----QVIGGGWICS 370 >gi|295698406|ref|YP_003603061.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Riesia pediculicola USDA] gi|291157242|gb|ADD79687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Riesia pediculicola USDA] Length = 363 Score = 415 bits (1067), Expect = e-114, Method: Composition-based stats. Identities = 116/382 (30%), Positives = 195/382 (51%), Gaps = 36/382 (9%) Query: 16 KNPKD--MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 KN K+ RVVV MSGGVDSSV A LLK+ Y+V+G+ ++ + SC +D+ Sbjct: 2 KNKKNYVARVVVGMSGGVDSSVAALLLKKRNYEVLGLFMKNWEEDDGH----SCSYIEDL 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D + VC+ + + Y ++ + N V F Y G+TP P V CN+ +KF + L + Sbjct: 58 KDVKSVCEKLKIQLYQVNFSIEYWNKVFKVFLKKYKTGKTPNPDVLCNKEIKFKEFLDFS 117 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + L AD +ATGHY+R + + I+ + D +DQSYFL Q QL + FP+ Sbjct: 118 LENLNADYIATGHYVRKKKR-----NEKYILLKAKDERKDQSYFLHLLDQSQLEKVIFPI 172 Query: 193 GDMKKESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 G+ KK +R +A + G L ++ K DS ICF+ + ++ + +++ GDI+ ++ + Sbjct: 173 GEFKKSEIRKIAEKNGLLSVSKKKDSTGICFIGKKRFENFLQKYI--SCKNGDILSVHKE 230 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRI 303 I+G+H G I YT+GQR+G+ + P +V+ + + +++ SL I Sbjct: 231 IIGQHPGSILYTLGQRKGIRIGGIKNEKHGPWYVIDKNVKQNTIMISQNKFHPSLVSKGI 290 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASG 362 + ++W+ + ++C V+ R Q +++ + + V F+ + V G Sbjct: 291 IINNVHWISEP--------KYRCSVQTRYHQKETYCSIRKICLNRISVRFDHPILSVTPG 342 Query: 363 QACVFYTSDSNEARVLGGGIIS 384 Q VFY + LGGG I Sbjct: 343 QYGVFYDREV----CLGGGEID 360 >gi|313837818|gb|EFS75532.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL037PA2] gi|314927301|gb|EFS91132.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL044PA1] Length = 360 Score = 414 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 142/375 (37%), Positives = 197/375 (52%), Gaps = 21/375 (5%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCDTINV 85 MSGG+DS+V AA L G+DV GV L L N R + CC+ +D +DARR D + + Sbjct: 1 MSGGIDSAVAAARLVEAGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFDARRAADRLGI 60 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145 YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG D +ATGH Sbjct: 61 PFYVWDFSDRFAAEVIDPFIAEYQAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATGH 120 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y ++++ G + R +D +DQSY L Q QL FPLG+ K VR A Sbjct: 121 YAQAKVIDG-----VTKLYRSVDPGKDQSYVLAVLDQDQLAHSLFPLGNSLKTDVRQEAA 175 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 +GL +ADK DS DICF+ G + + +G+I +G ++GRHNG +TIG Sbjct: 176 ALGLSVADKPDSNDICFIPDGDTPGWLSEKIG--SADGEIRDESGALVGRHNGYHRFTIG 233 Query: 266 QRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 QRRGL + G+P +V+ ++ ++ V+VG E L V+ I W Sbjct: 234 QRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVYHIEAIRPVWCSGE-----PA 288 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 D + V++R+ DPVP + GV V+ E GVA GQA VFY D V+G Sbjct: 289 DTWHGQVQVRAHGDPVPATISTVPSGVSVELEDPLRGVAPGQAAVFYDGD----LVVGSA 344 Query: 382 IISGSKRSDAVEESL 396 I G+ R+ E Sbjct: 345 TICGTDRAGTTAEQA 359 >gi|255036423|ref|YP_003087044.1| tRNA-specific 2-thiouridylase MnmA [Dyadobacter fermentans DSM 18053] gi|254949179|gb|ACT93879.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Dyadobacter fermentans DSM 18053] Length = 368 Score = 414 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 131/379 (34%), Positives = 205/379 (54%), Gaps = 20/379 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76 K R++VAMSGG+DSS+ A LL GY+VIG+T++ ++ S +K++ CC+ + DA Sbjct: 3 KHGRILVAMSGGIDSSLAAVLLHEQGYEVIGMTMKTWDYASSGGTKKETGCCSLDSINDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + + HY+ D F + VI F Y G TP PCV CN +K+ LL +L Sbjct: 63 RNIAVELGFPHYILDIRAEFGDYVIDHFTGEYLEGRTPNPCVLCNTHIKWDALLRRADRL 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 + +ATGHY + G R + + +D +DQSY L+ +Q+ L + PLG + Sbjct: 123 DCEFIATGHYANMQFNNG-----RHYVSKGIDAWKDQSYVLWGVSQESLARTKLPLGYLH 177 Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252 K +R++ARE G D+ +KS+S +ICFV Y +KR G+ E G+ V+ +G I Sbjct: 178 KAEIREMARERGFIDLVNKSESYEICFVPDNDYRGFLKRRIPGLEAEVAGGNFVYADGTI 237 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G+H G YT+GQR+GLG+A+G P+FV + K+++ V++G L + + ++N Sbjct: 238 VGKHEGYPFYTVGQRKGLGIALGRPVFVTEIRKDTNEVVLGDMPDLFRDGMNVSKLNL-- 295 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSD 371 ++ + K+R D P +++ D + F G+A GQA VFY D Sbjct: 296 --QKYASIEKPLETITKVRYKHDGTPALIEQTGPDQIVARFHDGVNGIAPGQAAVFYEGD 353 Query: 372 SNEARVLGGGIISGSKRSD 390 V+GGG I S R + Sbjct: 354 D----VVGGGWIMKSFRQE 368 >gi|227832922|ref|YP_002834629.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Corynebacterium aurimucosum ATCC 700975] gi|262182589|ref|ZP_06042010.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium aurimucosum ATCC 700975] gi|254811450|sp|C3PFT7|MNMA_CORA7 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|227453938|gb|ACP32691.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Corynebacterium aurimucosum ATCC 700975] Length = 361 Score = 414 bits (1066), Expect = e-113, Method: Composition-based stats. Identities = 150/376 (39%), Positives = 199/376 (52%), Gaps = 24/376 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79 MRV+VAMSGGVDSSV AA G+DVIGV L L+ + ++ K CC+ +D DARR+ Sbjct: 1 MRVLVAMSGGVDSSVAAARAVEAGHDVIGVHLALHKDAQQTREKARGCCSLEDSADARRI 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + + YV+D+ E F+ AVI F SYA GETP PC+ CN +KF+ LL LG D Sbjct: 61 CDKLGIPFYVWDFSEEFKEAVIGDFVDSYARGETPNPCLRCNEKIKFAALLRKGMALGFD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + DG M R +D +DQSY L T+++L FP+GD K Sbjct: 121 AVATGHYAT----IDSDG----YMRRSLDENKDQSYVLGVITKEELDHCFFPIGDTPKPQ 172 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R+ A+ G A K DS DICF+ G + R G IV G L H+G Sbjct: 173 IREEAKRHGFSTAAKPDSYDICFIPDGNTQAFLGRSIGL--RPGMIVDTEGNELKEHDGA 230 Query: 260 INYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 NYTIGQR+GL + A G P +V +D + V VG R L V I + +L Sbjct: 231 WNYTIGQRKGLDIKTPTADGSPRYVTDIDAATGTVTVGSRADLAVTHIEADRLKYLH--- 287 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPV--FVQRNDDGVYVDFEKSEVGVASGQACVFY--TSD 371 A+ F C V++R+ VP V R D + ++ + GVA GQA V Y + D Sbjct: 288 --PAMEGDFDCEVQVRAHGSVVPCHAHVDREADRMTLELNEPLSGVARGQAAVLYLPSPD 345 Query: 372 SNEARVLGGGIISGSK 387 VLG G I G++ Sbjct: 346 ELGDIVLGSGTICGTE 361 >gi|254796826|ref|YP_003081663.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neorickettsia risticii str. Illinois] gi|254590056|gb|ACT69418.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neorickettsia risticii str. Illinois] Length = 368 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 169/370 (45%), Positives = 236/370 (63%), Gaps = 15/370 (4%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGSCCAGQDVY 74 K +D++V+VAMSGGVDSS VAA L R GY VIGVTLQL+++ +++ + +CCAG D++ Sbjct: 11 KASRDIKVMVAMSGGVDSSTVAAYLHRAGYKVIGVTLQLHSNSTSTQTNRKTCCAGSDIF 70 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+RV HYV + EE FR VI FA SY GETP+PCV CN+TVKF DL+ + + Sbjct: 71 DAKRVAAQFGFLHYVVNMEETFRKEVIEDFAKSYLRGETPIPCVKCNQTVKFRDLMKIAK 130 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 L D L TGHY+R + + +D +DQSYFLF TT++QL LRFPLG+ Sbjct: 131 NLSVDALVTGHYVRRLT-----TTNGVELHKGIDPSKDQSYFLFNTTREQLEFLRFPLGN 185 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 +KK RDLAR++ +DI++K +SQDICFV Y DV+K+ G I+ NG++LG Sbjct: 186 LKKSETRDLARKLSVDISEKPESQDICFVNGKSYADVIKKFRPDAQKPGKILSTNGEVLG 245 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 HNG I+YTIGQR GL ++ PL+VV +D ++ +IVG R+ L+ +Y++E+NWL Sbjct: 246 THNGTIHYTIGQRHGLQLSSPTPLYVVKIDAQNNIIIVGTRDKLQQRSLYVKEVNWLDG- 304 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYTSDSN 373 + G +C VK+RS D V ++ + D + V E+ + +A GQACV Y Sbjct: 305 ---KELTAGLECEVKLRSGADTVKGYLYPSSDLLKVSLAEEPKCAIAPGQACVMYHG--- 358 Query: 374 EARVLGGGII 383 ++VLGGG I Sbjct: 359 -SKVLGGGWI 367 >gi|114776442|ref|ZP_01451487.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mariprofundus ferrooxydans PV-1] gi|114553272|gb|EAU55670.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mariprofundus ferrooxydans PV-1] Length = 374 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 154/371 (41%), Positives = 200/371 (53%), Gaps = 18/371 (4%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-SRKASKRKGSCCAGQDVYD 75 K +RV+ AMSGGVDSSV+A LLK G DVIGV L +++ SR R GSCC+ +D YD Sbjct: 18 PLKGVRVIAAMSGGVDSSVMAVLLKEAGVDVIGVFLNVWDYSRDEVNRHGSCCSLEDSYD 77 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 ARRV D I + Y D + FR VI PF Y G TP PC CNR VKF LL + Sbjct: 78 ARRVADHIGIPFYAMDMRDEFRRDVIDPFIQDYETGRTPNPCERCNRFVKFGALLEAADK 137 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L A +ATGHY+R R D + + D +DQSYFL T + Q + FP+G + Sbjct: 138 LEAAYVATGHYVRRR-----DDNDGIHLFKGNDARKDQSYFLATTNRAQAERILFPVGGL 192 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHLNGQILG 254 +K+ R LA L ADK +SQDICF+ G +KR A EGDIV G+ILG Sbjct: 193 EKDDTRRLAHFYKLPTADKHESQDICFIPAGDRIAFLKREGAEAGFREGDIVDTTGRILG 252 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 RH GI +YT+GQR+GLG+ G P VV LD ++RV V E + + + E W+ + Sbjct: 253 RHQGIAHYTLGQRKGLGLPDG-PWHVVALDGATARVTVAHPEDAMIGGVDVSEAVWIRE- 310 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 G K+R P ++ D+ + V F + + A GQ FY D Sbjct: 311 -----PKSGEAVTAKVRYQMQPAACVLEHFDESLRVTFAQPQKPSAPGQVAAFYAGD--- 362 Query: 375 ARVLGGGIISG 385 +LGGGI+S Sbjct: 363 -ELLGGGIVSR 372 >gi|256820771|ref|YP_003142050.1| tRNA-specific 2-thiouridylase MnmA [Capnocytophaga ochracea DSM 7271] gi|256582354|gb|ACU93489.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Capnocytophaga ochracea DSM 7271] Length = 397 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 115/405 (28%), Positives = 191/405 (47%), Gaps = 50/405 (12%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RVVV +SGGVDSSV A LLK GY+VIG+ ++ ++ + C +D DA V Sbjct: 2 KRVVVGLSGGVDSSVAAYLLKEQGYEVIGLFMKNWHDDSVT-ISDECPWLEDSNDALLVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + D E ++ ++ + Y G TP P V CNR +KF + + LGAD Sbjct: 61 EKLGIPFQTVDMSEPYKARIVDYMFNEYEHGRTPNPDVLCNREIKFDVFMKLALSLGADY 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + G + + D +DQSYFL +Q QL FP+G+++K V Sbjct: 121 VATGHYCR-KEEIEIKGGKIYRLLSGKDENKDQSYFLCQLSQDQLSKALFPVGELQKSEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL------------ 248 R +A+ L ADK DSQ +CFV + + + +++ +GDI+ + Sbjct: 180 RAIAKAQDLITADKKDSQGLCFVGKVRLPEFLQQKLQ--PKQGDIIEIPNDWKGYTDFDM 237 Query: 249 -----------------------NGQILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLD 284 NG+ +G H G +T GQR+GL EPLF++ D Sbjct: 238 PRTFETYEDELEYLSQRFVYQPENGKKVGIHQGAHYFTKGQRKGLNVGGTKEPLFIIETD 297 Query: 285 KNSSRVIVGP---RESLEVHRIYLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339 + + G L +++ + +W+ + L + + + V+IR Q Sbjct: 298 IEKNIIYTGQGHTHRGLFRSALFIATPDEHWIREDLAL-KIYESKEFMVRIRYRQPLQKA 356 Query: 340 FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + + ++G+Y+ F + + + GQ +Y+ D ++G G+IS Sbjct: 357 VLYKVENGLYIHFSEPQSAITEGQFAAWYSGD----ELVGSGVIS 397 >gi|296124260|ref|YP_003632038.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Planctomyces limnophilus DSM 3776] gi|296016600|gb|ADG69839.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Planctomyces limnophilus DSM 3776] Length = 392 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 140/390 (35%), Positives = 202/390 (51%), Gaps = 31/390 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ---------------LYNSRKASKRKGS 66 RVV+AMSGGVDSSV A LL++ GY+VIG+ ++ L + K Sbjct: 9 RVVLAMSGGVDSSVAAVLLQQQGYEVIGLFMRSGEASASACSLPPSGLLPVIERKSHKQG 68 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 CC+ D DA+RV D +++ + ++ + F + + FA Y G TP PCV CN +KF Sbjct: 69 CCSAADAADAQRVADLLDIPFHALNFRDSF-DQIKSYFADEYLKGRTPNPCVMCNVWLKF 127 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L +Q+GA +ATGHY R D + + R DL +DQSY LF L Sbjct: 128 GRLWEFAQQVGATRIATGHYARIIQ----DEFGQTRLMRGADLSKDQSYVLFGIRPDILS 183 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 + FP+G K +R++A + L +A K DSQ+ICF+ Y ++R G+ V Sbjct: 184 KILFPVGHQPKAEIREIAAQANLRVAGKPDSQEICFIPDNDYRGFLRRYRDVSDTSGNFV 243 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 G+ILG+H+G +TIGQRRGLG+A+GEP FV+ +D S V +G E L + Sbjct: 244 DPQGKILGQHSGFEQFTIGQRRGLGIALGEPRFVIKIDAESRNVTLGTAEELGSSSLVAA 303 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365 NWL + F C +IRS + Q + DG +++ F + + GVA GQA Sbjct: 304 RTNWLS-----APTSEVFSCTAQIRSMHRAAAAWAQVDADGTLHLRFCEPQSGVAPGQAV 358 Query: 366 VFYTSDSNEARVLGGGIISGSK--RSDAVE 393 V Y + RV+ G I S+ R+DA+ Sbjct: 359 VLYD---SLERVICGAWIEDSQPPRADALA 385 >gi|314923325|gb|EFS87156.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL001PA1] Length = 396 Score = 414 bits (1065), Expect = e-113, Method: Composition-based stats. Identities = 146/380 (38%), Positives = 203/380 (53%), Gaps = 21/380 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80 +V+ AMSGGVDS+V AA L G+DV GV L L N R + CC+ +D +DARR Sbjct: 32 KVLAAMSGGVDSAVAAARLVETGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFDARRAA 91 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG D Sbjct: 92 DRLGIPFYVWDFSDRFVVEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYDA 151 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R+++ G + R +D +DQSY L Q QL FPLG+ K +V Sbjct: 152 VATGHYARTKVIDG-----VTKLYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKVNV 206 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R A +GL +ADK DS DICF+ G + +G+I +G ++G HNG Sbjct: 207 RQEAAALGLSVADKPDSNDICFIPDGDTPGWLSDKIGLA--DGEIRDESGALVGHHNGYH 264 Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 ++TIGQRRGL + G+P +V+ ++ ++ V+VG E L VH I + W Sbjct: 265 HFTIGQRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEVIRPVWCSGE-- 322 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 V+ + ++R+ DPVP + GV V+ E S GVA GQA VFY D Sbjct: 323 ---PVETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAVVFYDGD----L 375 Query: 377 VLGGGIISGSKRSDAVEESL 396 V+G I G+ R+ E Sbjct: 376 VVGSATICGTDRAGVKAEQA 395 >gi|162455579|ref|YP_001617946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sorangium cellulosum 'So ce 56'] gi|205828973|sp|A9EXM5|MNMA_SORC5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|161166161|emb|CAN97466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sorangium cellulosum 'So ce 56'] Length = 385 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 149/385 (38%), Positives = 201/385 (52%), Gaps = 21/385 (5%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 ++ RV +AMSGGVDSSV AA L GY+V+GVTL L++ K CCA +D + Sbjct: 16 ERPSSGARVFIAMSGGVDSSVAAARLCDAGYEVVGVTLHLWDYPDDGSVKSRCCAPEDQH 75 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DARRV D + + HY FD FR V+ PF +Y AGETP PCV CNR+VK +L + Sbjct: 76 DARRVADHLGIPHYTFDRRALFREHVVDPFVEAYLAGETPSPCVACNRSVKLRELFPLAE 135 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 +LG +ATGHY R L G + R D +DQSYFL +L L FPLGD Sbjct: 136 RLGVSWVATGHYARVVLEEG-----GARLYRGRDRHKDQSYFLHMLRSDELSRLLFPLGD 190 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 K+ VR A GL A+K +SQ++CF+ G+Y V A G IV +G+++G Sbjct: 191 STKDEVRAEAIARGLPGAEKGESQELCFIPSGRYAPFVADRAADRLRPGPIVDRDGRVVG 250 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H G+ +T+GQR+G+GV++G P FVV LD S V +G L + + W D Sbjct: 251 SHGGVHGFTVGQRKGIGVSLGRPAFVVGLDAASGAVHLGDEGDLYAAGAEIADAVWCDDA 310 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD------GVYVDFEKSEVGVASGQACVFY 368 +F + V++R+ + P ++R D F V+ GQ V Y Sbjct: 311 VF------PLEAEVRVRARHEAAPGIIERRRDPATGAESFVARFASPVRSVSPGQMAVVY 364 Query: 369 TSDSNEARVLGGGIISGSKRSDAVE 393 D RVLGGG I + RS A Sbjct: 365 RGD----RVLGGGRIKAALRSQAAS 385 >gi|217967082|ref|YP_002352588.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dictyoglomus turgidum DSM 6724] gi|217336181|gb|ACK41974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dictyoglomus turgidum DSM 6724] Length = 343 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 129/365 (35%), Positives = 200/365 (54%), Gaps = 27/365 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V V MSGGVDSS+ A LLK++GY+VIG+T+ + + DA++V + Sbjct: 4 KVAVGMSGGVDSSITAYLLKKEGYEVIGLTMNI-------------AYSSSIKDAKKVAE 50 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +N+ H+ D + F +I F SY G TP PCV CN+ +KF LL ++LGAD L Sbjct: 51 YLNIPHFFVDLKNEFEEKIIKYFVESYKHGYTPNPCVFCNKLIKFGLLLEKAKELGADFL 110 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 +TGHY+R V D+ ++ ++ R DL++DQSYFL TQ+Q+ FPLG++ KE VR Sbjct: 111 STGHYVRK---VWDEERKTYLLMRAKDLKKDQSYFLGMLTQEQIKKTLFPLGELTKEEVR 167 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A E+G+ +A+K +SQDICF+ Y + + G I+ +G+ +G H+G+ + Sbjct: 168 KIADELGIFVANKKESQDICFLPDKDYKRFLSKYLED--KPGKIITEDGKEVGYHSGVFS 225 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 +TIGQRRGL VA+G P++V +D N+ V V RE + +Y +N+ Sbjct: 226 FTIGQRRGLRVALGVPVYVRDIDPNTGNVTVTDREKVFGKEVYAVNVNY----PSYFPEK 281 Query: 322 DGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 + + IR + P P ++ ++ V F+ + + GQ V Y + VL Sbjct: 282 RELRAYAMIRYNMKPSPGVLKIVSEKEVLFIFDDPQWAITPGQILVCYLDN----HVLCA 337 Query: 381 GIISG 385 GII Sbjct: 338 GIIER 342 >gi|224023564|ref|ZP_03641930.1| hypothetical protein BACCOPRO_00267 [Bacteroides coprophilus DSM 18228] gi|224016786|gb|EEF74798.1| hypothetical protein BACCOPRO_00267 [Bacteroides coprophilus DSM 18228] Length = 378 Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats. Identities = 124/384 (32%), Positives = 187/384 (48%), Gaps = 22/384 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD RV+V MSGG+DSS V +L+ GY+V+GVT++ ++ G +V +A+ Sbjct: 5 KDKRVLVGMSGGIDSSAVCIMLQEQGYEVVGVTMRTWDVPSHFSTPGQ-EQPDEVLEAQA 63 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + H+V D E FR ++ F Y G TP PCV CN K L + Sbjct: 64 LAARLGIEHHVADVREEFRQVIVKYFIDEYMRGRTPNPCVMCNPLFKERILCEWADRTDC 123 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY + +D R + D +DQSYFL+ Q+ L + FPLG M K+ Sbjct: 124 AWIATGHYCQL-----EDRNGYRYILTGDDPTKDQSYFLWKLPQEILRRMIFPLGGMTKQ 178 Query: 199 SVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILG 254 VR E G + A +S +ICF+ Y D ++ I G V G LG Sbjct: 179 EVRAYLAEKGFEAKARGGESMEICFI-DKDYRDFLREHCPDIDERIGPGWFVDSKGLKLG 237 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +H G YTIGQRRGL +A+G+P +V+ ++ + V++G E L + + ++N Sbjct: 238 QHKGFAYYTIGQRRGLDIALGKPAYVLKINPAKNTVMLGDAEQLNAEYMLVEDVN----V 293 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + ++ V+IR +P V +D+ + V FE + GQ+ VFY + Sbjct: 294 ANLEELLTCPSLSVRIRYRSRAIPCRVITLDDNRLLVKFEGPASAITPGQSAVFYDGN-- 351 Query: 374 EARVLGGGIIS--GSKRSDAVEES 395 RVLGGG I+ + R A E Sbjct: 352 --RVLGGGFIAFQQAIRKIAAENQ 373 >gi|91215966|ref|ZP_01252935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Psychroflexus torquis ATCC 700755] gi|91185943|gb|EAS72317.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Psychroflexus torquis ATCC 700755] Length = 397 Score = 413 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 117/405 (28%), Positives = 192/405 (47%), Gaps = 50/405 (12%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RVVV +SGGVDSSV A L K GY+VIG+ ++ ++ + C +D DA V Sbjct: 2 KRVVVGLSGGVDSSVAAYLCKEKGYEVIGLFMKNWHDDSVT-ISDECPWLEDSNDAMLVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + D ++++ ++ + Y G TP P V CNR +KF + + LGAD Sbjct: 61 EKLGIPFQTVDLSKQYKERIVDYMFAEYEKGRTPNPDVLCNREIKFDVFMDIATSLGADY 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + + + + D +DQSYFL +Q+QL FP+G+++K V Sbjct: 121 VATGHYCR-KDSIEKNSETIYRLLAGKDDNKDQSYFLCQVSQKQLAKTLFPVGELQKSEV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN----------- 249 R +A+ L ADK DSQ +CF+ + K D +++ + EG ++ ++ Sbjct: 180 RQIAKSQNLITADKKDSQGLCFIGKVKLPDFLQQKLK--SKEGQVIEIDSSHDIFKAEKS 237 Query: 250 ------------------------GQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLD 284 G++LG H G +T GQR+GL + EPLFV+ D Sbjct: 238 AKTDSELITQLKKDSKKLSLKPEFGKVLGTHVGAHFFTKGQRKGLAIGGTKEPLFVIDTD 297 Query: 285 KNSSRVIVGP---RESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339 ++ + G L +++ E++W+ L E D + +IR Q Sbjct: 298 VENNILYTGQGKTHPGLHKKGLWVTNDEVHWIRQDL-ELKEGDTMEVMARIRYRQPLEKA 356 Query: 340 FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + + D +YV FE + ++ GQ +Y D +LG G+I+ Sbjct: 357 KLYKMKDELYVIFEDEQTAISEGQFVAWYHED----ELLGSGVIA 397 >gi|110638005|ref|YP_678212.1| tRNA-specific 2-thiouridylase MnmA [Cytophaga hutchinsonii ATCC 33406] gi|110280686|gb|ABG58872.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cytophaga hutchinsonii ATCC 33406] Length = 358 Score = 413 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 128/370 (34%), Positives = 200/370 (54%), Gaps = 18/370 (4%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK--ASKRKGSCCAGQDVYDARRVCDTIN 84 MSGG+DSSV A +L GY+VIG+T++ ++ SK++ CC+ + DAR + ++ Sbjct: 1 MSGGIDSSVAAVMLHEQGYEVIGMTMKTWDYANLGGSKKETGCCSLDSINDARNIAVSLG 60 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 HY+ D E F + VI F Y G TP PCV CN +K+ LL ++ D +ATG Sbjct: 61 FPHYIVDIREEFGDYVINHFNKEYLDGRTPNPCVLCNTHIKWDSLLRRADKMDCDFIATG 120 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY + R R ++ + +D +DQSY L+ +QQ L FPLG + K +R +A Sbjct: 121 HYAQVRSE-----NNRFVISKGLDENKDQSYALWGISQQSLSRTMFPLGHLHKTDIRAMA 175 Query: 205 REMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRHNGII 260 E G D+ +KS+S +ICFV Y +KR N G+ E G+ V +G ++G+H G Sbjct: 176 AERGFMDLVNKSESYEICFVPDNDYRGFLKRRNPGLEEEVRGGEFVMEDGTVVGKHEGYP 235 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQR+GLG+ +G P+FV + K ++RV++G E L + +++ ++ + Sbjct: 236 FYTIGQRKGLGITLGYPVFVTEIQKENNRVVLGREEGLNRNGMWVDQL--IMSKYENLKG 293 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 + K+R + D +++ D + V F + +A GQA VFY + V+GG Sbjct: 294 IQKQSIT-KVRYNDDGTSSTIEQVGDEMRVLFHEHVKAIAPGQAAVFYEGND----VIGG 348 Query: 381 GIISGSKRSD 390 G I S + D Sbjct: 349 GWIKSSFKQD 358 >gi|301774935|ref|XP_002922890.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like [Ailuropoda melanoleuca] Length = 477 Score = 413 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 121/388 (31%), Positives = 183/388 (47%), Gaps = 36/388 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VVVA+SGGVDS+V A LL+R GY V GV ++ ++S G C A +D DA RVC Sbjct: 64 HVVVALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEH---GVCIADRDCEDAYRVCQ 120 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140 +++ + Y + + N V F S Y G TP P + CN+ +KFS LGAD Sbjct: 121 ILDIPFHQVSYVKEYWNDVFSDFLSEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 180 Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQ 182 +ATGHY R+ L + +++ I + + D +DQ++FL +Q Sbjct: 181 VATGHYARTSLEDEEVFQQKHIRRPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQ 240 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 L FPLG + K+ V+ +A E L + K +S ICF+ + + + + + Sbjct: 241 DALRRTLFPLGGLTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNFENFILQYLQ--PR 298 Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RES 297 G + + + ++LG H G YT+GQR + + EP +VV D V V P + Sbjct: 299 PGKFISIEDSKVLGTHKGWFLYTLGQRAKIS-GLQEPWYVVEKDGTKGDVFVAPRTDHPA 357 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355 L + ++W+ + V D +C + R VP + N DG V+V K+ Sbjct: 358 LYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVKA 417 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383 +A GQ VFY D LG G I Sbjct: 418 VRALAPGQFAVFYKGD----ECLGSGKI 441 >gi|46200029|ref|YP_005696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermus thermophilus HB27] gi|55980227|ref|YP_143524.1| tRNA-specific 2-thiouridylase MnmA [Thermus thermophilus HB8] gi|81405338|sp|Q72GX1|MNMA_THET2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|81600559|sp|Q5SLN5|MNMA_THET8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|46197656|gb|AAS82069.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermus thermophilus HB27] gi|55771640|dbj|BAD70081.1| probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermus thermophilus HB8] Length = 367 Score = 413 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 134/372 (36%), Positives = 188/372 (50%), Gaps = 34/372 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-------SCCAGQDV 73 RV+VAMSGGVDSSV A LLK GY+V+G ++ + + SCC Sbjct: 2 KRVLVAMSGGVDSSVAALLLKEAGYEVVGAMMRFWPDLPPPSLEAGKPRAWESCCTPDAA 61 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 Y+ARRV D + + Y+ DY E F +I PF YA G TP PC CN VKF LL Sbjct: 62 YEARRVADRLGIPFYLLDYREVFEEEIISPFLQDYAQGRTPNPCARCNTFVKFGALLKQA 121 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 R+LG D +ATGHY+R K + R +D +DQ+YFL+ T ++ L L FP+G Sbjct: 122 RRLGLDYVATGHYVR---------KEGLALLRGLDPHKDQTYFLWGTPKEALPHLLFPVG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQI 252 + K VR LA + GL A + +SQ++CFV G +K G +V L G++ Sbjct: 173 GLTKPEVRALAEKAGLPTARRPESQNLCFVA-GDLKGFLKERLK--PRPGPLVDALTGEV 229 Query: 253 LGRHNGIINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 +G H G YT+GQR+GLG+ +VV +D + V VGP+E+ + +N L Sbjct: 230 VGEHEGASLYTLGQRKGLGLYKTHLERYVVGVDPERNVVYVGPKEACYFEGLEGEGLNLL 289 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + E V++R PV V+ + + F V GQ+ VFY + Sbjct: 290 AELPEE--------VEVQVRYRTPPVRAKVESLSP-LRLRFAHPVFAVTPGQSAVFYRGE 340 Query: 372 SNEARVLGGGII 383 R+LGG +I Sbjct: 341 ----RLLGGAVI 348 >gi|71897067|ref|NP_001026522.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Gallus gallus] gi|75571355|sp|Q5ZKW0|MTU1_CHICK RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1 gi|53130608|emb|CAG31633.1| hypothetical protein RCJMB04_8p20 [Gallus gallus] Length = 424 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 117/396 (29%), Positives = 180/396 (45%), Gaps = 44/396 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV A+SGGVDS+V A LL+R GY V GV ++ ++ +G+C +D DA RVC Sbjct: 7 RVACAVSGGVDSAVAALLLRRRGYQVTGVFMKNWDPLD---EQGACSVDRDCEDAYRVCQ 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 +++ + Y + + N V Y G TP P + CN+ +KF+ L LGAD Sbjct: 64 KLDIPFHQVSYVKEYWNEVFSDLLKEYELGRTPNPDIVCNKHIKFNHFLHYAMDNLGADA 123 Query: 141 LATGHYIRSRLYVGDDGKRRR------------------IMCRPMDLERDQSYFLFATTQ 182 +ATGHY R+ L + +++ + + DL +DQ++FL +Q Sbjct: 124 IATGHYARTSLEDEEVFQQKHTKRPRELFRNRFEVRNTVKLLQGADLFKDQTFFLSQISQ 183 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSD--------SQDICFVQQGKYFDVVK 233 L FPLGD+ K VR +A E GL + K + S +CF+ + + + Sbjct: 184 DALRKTIFPLGDLTKSFVRKIASEHGLHHVLKKKEACTTFPFQSMGVCFIGERNFEKFLL 243 Query: 234 RINAGIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV 292 G+ V + + +++G H G YTIGQR L + FVV D ++ + V Sbjct: 244 EYLE--PQPGNFVSIEDKKVMGTHKGWFLYTIGQRARL-AGLQGAWFVVDKDVSTGDIFV 300 Query: 293 GP---RESLEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG- 347 P +L + ++W+ + + V D +C + R VP + N DG Sbjct: 301 APSTDHPALFRDLLRTNRVHWIAEEPPAELVRDKMMECHFRFRHQMALVPCVLTLNQDGS 360 Query: 348 VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 V+V K + GQ VFY D LG G I Sbjct: 361 VWVTLVKPARALTPGQFAVFYKGD----ECLGSGKI 392 >gi|116073367|ref|ZP_01470629.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. RS9916] gi|116068672|gb|EAU74424.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. RS9916] Length = 520 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 140/383 (36%), Positives = 201/383 (52%), Gaps = 29/383 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 L + P + RV V +SGGVDSS+ AALL G++V G+TL L + KG+CC + + Sbjct: 149 LRQWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMS------GKGACC-AEGL 201 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA +C+ + V H+V D+ E F+ ++ YA G TPLPC CNR VKF +L+ Sbjct: 202 VDAAGICEQLGVPHHVVDFREHFKEQIVQFLVDGYAEGVTPLPCSRCNREVKFGPMLAWA 261 Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 R+ D +ATGHY R R D R + R +D +DQSYFL+ Q+ L L FPL Sbjct: 262 ERERSIDRIATGHYARVRHGDQSD-NGRHQLLRGLDQRKDQSYFLYDLPQEALGRLVFPL 320 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQ 251 G++ K R A GL A K +SQD+C G + EG+IV L+G Sbjct: 321 GELTKPDTRLEAERFGLRTAKKPESQDLCLADHHGSMRAFLDTYLP--PREGEIVLLDGT 378 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 ++G+H+GI ++TIGQR+GLGVA EPL VV LD +RV+V R R + +NW+ Sbjct: 379 VVGQHDGIEHFTIGQRKGLGVAWSEPLHVVRLDAAMNRVVVATRAEAGTDRCVVGAVNWV 438 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-----------DDGVYVDFEKSEVGVA 360 ++ V++R PV +++ + F++ + + Sbjct: 439 SMAPPAQGAR--YRVEVQVRYRSQPVGAWLEVVPATDADAAGGRPHRCQLQFDEPQFSIT 496 Query: 361 SGQACVFYTSDSNEARVLGGGII 383 GQA VFY + RVLGGG+I Sbjct: 497 PGQAAVFYDGE----RVLGGGLI 515 >gi|163840418|ref|YP_001624823.1| tRNA-specific 2-thiouridylase MnmA [Renibacterium salmoninarum ATCC 33209] gi|189040507|sp|A9WMS3|MNMA_RENSM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|162953894|gb|ABY23409.1| tRNA methyl transferase [Renibacterium salmoninarum ATCC 33209] Length = 378 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 140/379 (36%), Positives = 196/379 (51%), Gaps = 23/379 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+V+ AMSGGVDS+V AA G++V+GV L L + + R GS CC +D DA + Sbjct: 1 MKVLAAMSGGVDSAVAAARTVEAGHEVVGVHLAL-SRMPGTLRTGSRGCCTIEDSTDAWK 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + +YV+D+ ERF+ V+ F + YAAG TP PC+ CN +KF+ LL LG Sbjct: 60 ACEKLGIPYYVWDFSERFKEDVVDDFIAEYAAGRTPNPCMRCNERIKFAALLEKAIALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-MKK 197 D + TGHY R V D + R D +DQSY L T +QL FPL D K Sbjct: 120 DAVCTGHYAR----VAQDEDGNYELHRASDWAKDQSYVLGVLTHEQLKHSMFPLSDAQTK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR A GL +A K DS DICF+ G + G+I+ +G +G H Sbjct: 176 AEVRAEADRRGLSVAKKPDSHDICFISDGDTRGWLAE--KIDMTPGEILDQSGAKVGTHE 233 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G +T+GQRRGL + G+P FV+ + + V+VGP + L ++ I +I+W G+ Sbjct: 234 GANAFTVGQRRGLKLGTPAADGKPRFVLEIRPKENTVVVGPEQMLAMNEIRGIKISWAGE 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVF--VQRNDDG---VYVDFEKSEVGVASGQACVFY 368 + E F C ++R+ DPVP V +DDG + V+ GVA GQ V Y Sbjct: 294 PIAEVGAGTEFDCMAQVRAHGDPVPARAFVTTDDDGAPLLVVNLIDPLRGVAPGQTVVLY 353 Query: 369 TSDSNEARVLGGGIISGSK 387 RVLG I ++ Sbjct: 354 QG----TRVLGQATIDTAR 368 >gi|229826315|ref|ZP_04452384.1| hypothetical protein GCWU000182_01687 [Abiotrophia defectiva ATCC 49176] gi|229789185|gb|EEP25299.1| hypothetical protein GCWU000182_01687 [Abiotrophia defectiva ATCC 49176] Length = 360 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 131/363 (36%), Positives = 192/363 (52%), Gaps = 8/363 (2%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VVV +SGGVDSSV A LLK+ GY+V GVT+ ++ G C Q DAR+V Sbjct: 3 KKVVVGLSGGVDSSVAAYLLKKQGYEVYGVTMDIWTEGAVDTVNGGCLGSQAKEDARKVA 62 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +T+++ + V D +FR V+ FA SY GETP PC CNR VK+ L GA+ Sbjct: 63 ETLDIPYKVVDVRGKFRENVMNYFADSYKNGETPNPCTLCNRRVKWEALFKGAELFGAEY 122 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + R R + +DQ+Y L TQ+QL P+GD +K V Sbjct: 123 VATGHYAKIRKLA----NGRYTIANSYTAAKDQTYALCNLTQEQLRRTLLPIGDYEKSEV 178 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A E G++IA K DS +ICF+ G Y +++ A +G+ V ++G +LG H GI+ Sbjct: 179 RKIAAEAGIEIAAKPDSMEICFIPDGDYAGYLEKEYGIAAHKGNFVDVDGNVLGEHRGIV 238 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +YTIGQR+GLG+A G+P+FV + ++ V++ E L R+ IN++ + E Sbjct: 239 HYTIGQRKGLGIAFGKPMFVKEIRPETNEVVLSDNEGLFTERVVAERINFMAETKEEIEA 298 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 D KIR + + +D + +F + + A GQ V Y V+ G Sbjct: 299 SDKI-YLAKIRYNHKGGECKLSFEEDRIAAEFLEPQRASAPGQTLVVYN---EAGEVVCG 354 Query: 381 GII 383 G I Sbjct: 355 GRI 357 >gi|150025823|ref|YP_001296649.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Flavobacterium psychrophilum JIP02/86] gi|205816862|sp|A6H0G9|MNMA_FLAPJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|149772364|emb|CAL43842.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Flavobacterium psychrophilum JIP02/86] Length = 395 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 113/403 (28%), Positives = 194/403 (48%), Gaps = 48/403 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RVVV +SGGVDSSV A LL+ GY+VIG+ ++ ++ + C +D DA V Sbjct: 2 KRVVVGLSGGVDSSVAAYLLQEQGYEVIGLFMKNWHDDSVT-ISNECPWLEDSNDALLVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + D ++++ ++ S Y G TP P V CNR +KF + + LGAD Sbjct: 61 EKLGIPFQTVDLSQQYQEKIVDYMFSEYKKGRTPNPDVLCNREIKFDVFMKIALSLGADY 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + DGK + +D +DQSYFL +Q+QL FP+G++ K V Sbjct: 121 VATGHYCR-KGEIEVDGKPVYQLLAGVDDNKDQSYFLCQLSQEQLAKSLFPIGELTKPQV 179 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN----------- 249 R++A ++ L A+K DSQ +CF+ + + + +++ EG I ++ Sbjct: 180 REIATKIELVTAEKKDSQGLCFIGKVRLPEFLQQQLK--PKEGLIFEVDATNQIYNQEKI 237 Query: 250 ----------------------GQILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLDKN 286 +++G+H G +TIGQR+GL E LF++ + Sbjct: 238 NFDSVQEKLAFEAKDIQYTPEVAKVVGKHQGAHYFTIGQRKGLNVGGTKEALFIISTNVE 297 Query: 287 SSRVIVGP---RESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341 ++ + G L +++ EI+W+ L + +IR Q+ + Sbjct: 298 TNAIYTGQGHKHPGLFKKALFVTNDEIHWIRPDLALTN-GQTIQVMARIRYRQELQKATL 356 Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + ++G+YV+FE + + GQ ++ D ++G G+IS Sbjct: 357 HQFENGLYVEFETPQSAITQGQFVSWHIGD----ELIGSGVIS 395 >gi|320335245|ref|YP_004171956.1| tRNA-specific 2-thiouridylase mnmA [Deinococcus maricopensis DSM 21211] gi|319756534|gb|ADV68291.1| tRNA-specific 2-thiouridylase mnmA [Deinococcus maricopensis DSM 21211] Length = 386 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 142/373 (38%), Positives = 199/373 (53%), Gaps = 15/373 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RV+ AMSGGVDSSV A LLK GYDVIG ++ + K + SCC+ Y+ARRV Sbjct: 9 GKRVLCAMSGGVDSSVSAQLLKDQGYDVIGAMMRFWPDNKRTDTFDSCCSPDAAYEARRV 68 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + V Y+ DY + F+ ++ PF YA G TP PCV+CN VKF L+ R LG + Sbjct: 69 ADQVGVPFYLLDYRDEFKRNIMDPFLEDYARGRTPNPCVNCNTKVKFDALVKKARMLGCE 128 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+R DG R D +DQ+YFL+ T + L + FP+G M+K Sbjct: 129 YVATGHYVRREDVPTADGGVEVQFHRGDDPRKDQTYFLWGTPRDALKYILFPVGQMEKPR 188 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258 VR++A E GL A K +SQ+ICFV G D V G IV + G ++G H G Sbjct: 189 VREIAEEHGLLTAQKPESQNICFVP-GAVKDFVAEFVPQ--RTGYIVDIHTGDVVGEHLG 245 Query: 259 IINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 YT+GQ++GLG+ E FVV+LD +++ V VG + + + R N+L D Sbjct: 246 TQFYTLGQKKGLGLYKTHEVRFVVHLDPDTNIVWVGDQVDCQWTGVRARGANYLLDVA-- 303 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + V++R PV V + ++DG + F +++ V GQ+ V Y R Sbjct: 304 ---DLPQEVDVQVRYRTKPVRARVLRADEDGFELAFAEAQFAVTPGQSAVLYDG----TR 356 Query: 377 VLGGGIISGSKRS 389 +LGGG+I R Sbjct: 357 LLGGGLIEDHVRD 369 >gi|323341801|ref|ZP_08082034.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464226|gb|EFY09419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Erysipelothrix rhusiopathiae ATCC 19414] Length = 372 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 190/386 (49%), Gaps = 34/386 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73 M+V+V +SGGVDS+V A +LK G+DV ++ ++S + G+ C D Sbjct: 1 MKVLVGLSGGVDSAVAAHILKSQGHDVTCAFMRNWDSFANNDILGNPTIKDDMCSQEVDY 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+RV D + + DY + + + V F + G TP P + CNR VKF Sbjct: 61 DDAKRVADHLGLELLRVDYVKEYWDHVFSFFLAETERGNTPNPDILCNRFVKFDAFYDFM 120 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 G + LATGHY +R DGK M R +D +DQ+YFL + L + FPLG Sbjct: 121 DANGFEALATGHYAITR-----DGK----MYRAVDQNKDQTYFLSRVRPEVLPRVLFPLG 171 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQI 252 + K+ VR +A E+ L +A K DS ICF+ + +Y D +K + EGDI+ ++ ++ Sbjct: 172 SLTKDEVRRIALELDLPVATKKDSTGICFIGERQYRDFLKNYLKDV--EGDIIDVDTQKV 229 Query: 253 LGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308 LG+H G++ YTIGQR GL ++ P FVV D +++R+ VG L + E+ Sbjct: 230 LGKHQGVMFYTIGQRHGLDISTAVGPWFVVGKDLSTNRIYVGKGADHPMLFAGAAEIAEM 289 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVF 367 NW D + +C K R Q + V + D+ + V+ V GQ VF Sbjct: 290 NWFTDEKVD------LECTAKFRYRQKDIKVRISWLDETRLRVEMIDDVKSVTLGQEAVF 343 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVE 393 Y + LGGG I +D E Sbjct: 344 YLGE----ECLGGGRIDRVFDTDGNE 365 >gi|300771093|ref|ZP_07080969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sphingobacterium spiritivorum ATCC 33861] gi|300761763|gb|EFK58583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sphingobacterium spiritivorum ATCC 33861] Length = 363 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 128/370 (34%), Positives = 204/370 (55%), Gaps = 18/370 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76 K RV+VAMSGGVDSSV A +L GY+VIG+T++ ++ S S ++ CC+ + DA Sbjct: 3 KRGRVLVAMSGGVDSSVAAVMLHEQGYEVIGITMKTWDYASSGGSSKETGCCSLDSINDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + H++ D + F + VI F Y AG TP PCV CN +K+ L+ +L Sbjct: 63 RALAVNYGFPHFILDIRDEFGDYVIDNFVDEYIAGRTPNPCVLCNTHIKWEALIKRANKL 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 + +ATGHY RL+ R ++ + D +DQSY L+ TQ+ L +FPLG Sbjct: 123 DCEFIATGHYANIRLH----ENGRHVISKGRDENKDQSYVLWGVTQENLARTQFPLGSFT 178 Query: 197 KESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQI 252 K+ +R +A +MG +++A+KS+S +ICFV Y ++ + G+ + +G + Sbjct: 179 KKEIRQMAADMGQMELANKSESYEICFVPDNDYRAFLRHKMPDLDEKVGPGNFILSDGTV 238 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G+H G +TIGQR+GLG+A+G+P+FV+ + S+ V++G LE + Y+R IN + Sbjct: 239 VGQHIGYPYFTIGQRKGLGIALGKPMFVIEILPESNSVMLGEEHELERAQAYVRNINLVK 298 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 ++ + + KIR + + D + VDFE G+A GQ+ VFY + Sbjct: 299 YA----SISEPMEAVTKIRYKDSGALSTITQQGDIMKVDFEHHVKGIAPGQSAVFYEGND 354 Query: 373 NEARVLGGGI 382 ++GGG Sbjct: 355 ----LIGGGF 360 >gi|284929056|ref|YP_003421578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [cyanobacterium UCYN-A] gi|284809515|gb|ADB95220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [cyanobacterium UCYN-A] Length = 352 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 138/366 (37%), Positives = 202/366 (55%), Gaps = 23/366 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++VV +SGGVDSSV AA L GY+V G+TL L K KG CC+ V DA +C+ Sbjct: 3 KIVVGLSGGVDSSVAAASLCDQGYEVSGLTLWLM------KGKGQCCSEGMV-DAAHICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140 +N+ HY+ D +E F+ +I S Y +G TPLPC CNR+VKF +L + +L D+ Sbjct: 56 QLNIPHYIVDAKELFKKNIIDYLVSGYKSGITPLPCSQCNRSVKFKPMLDYAQQELDCDL 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R D + + R +D +DQSYFL+ Q L FPLG+ KE Sbjct: 116 IATGHYARIRYDKETD---KYKLLRAIDPNKDQSYFLYDLPQDILAKTIFPLGEQTKEDT 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R +A E L A+K +SQD+C ++ G +++ GDIV+ G++LG H GI Sbjct: 173 RRMATEFKLRTANKPESQDLCLIESYGSMASFLEKYIK--PQTGDIVNSKGEVLGTHKGI 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 NYTIGQR+GLG++ EPL+V+ L+ +++V+VG R ++++NW+ Sbjct: 231 HNYTIGQRKGLGISSSEPLYVLKLNLYNNQVVVGNRTEGFHSSCIIKDVNWISIS----K 286 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 V++R V + ++ + FE+S+ G+ +GQA V Y D VL Sbjct: 287 PDISMNVKVQVRYRSLAVSATIIPVENNRYKLIFEQSQFGITAGQAAVLYDDDI----VL 342 Query: 379 GGGIIS 384 GGII Sbjct: 343 AGGIIE 348 >gi|320449214|ref|YP_004201310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermus scotoductus SA-01] gi|320149383|gb|ADW20761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermus scotoductus SA-01] Length = 372 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 135/373 (36%), Positives = 191/373 (51%), Gaps = 36/373 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA---------SKRKGSCCAGQD 72 +V+VAMSGGVDSSV A LLK GY+V+G ++ + + SCC + Sbjct: 3 KVLVAMSGGVDSSVSAYLLKEAGYEVVGAMMRFWPEEPPRPTLDIPHKGRAWESCCTPEA 62 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 Y+ARRV + +++ Y+ DY E F +I PF YA G TP PC CN VKF LL Sbjct: 63 AYEARRVAEILDIPFYLLDYRETFEEEIIQPFLKDYAQGRTPNPCARCNTFVKFGALLKQ 122 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 ++LG D +ATGHY+R + R +D +DQSYFL+ T ++ L L FP+ Sbjct: 123 AQRLGLDYVATGHYVRREGES---------LLRGIDPLKDQSYFLWGTPKEALPHLLFPV 173 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQ 251 G M K VR LA GL A K +SQ++CFV G + ++ G +V L G+ Sbjct: 174 GGMTKAEVRALAERAGLPTARKPESQNLCFVA-GDLKEFLRERLE--VRPGPLVDALTGE 230 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 ++G H G YTIGQR+GLG+ +VV +D ++ V VGPRE+ + E N Sbjct: 231 VVGEHQGASLYTIGQRKGLGLFKPHLERYVVGVDPLANVVYVGPREATLWLGLEGEEANL 290 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 L + E V++R PV V+ + + + F V GQ+ VFY Sbjct: 291 LAELPEE--------VEVQVRYRTPPVRAKVESL-NPLRLRFATPVFAVTPGQSAVFYQG 341 Query: 371 DSNEARVLGGGII 383 + R+LGG +I Sbjct: 342 E----RLLGGAVI 350 >gi|297624808|ref|YP_003706242.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Truepera radiovictrix DSM 17093] gi|297165988|gb|ADI15699.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Truepera radiovictrix DSM 17093] Length = 372 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 146/387 (37%), Positives = 196/387 (50%), Gaps = 23/387 (5%) Query: 2 VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61 +++ + L D PK RV+ AMSGGVDSS+ AALLK GY V G L+ + + Sbjct: 1 MLAPSPTLEPQTTDAAPKG-RVLCAMSGGVDSSLAAALLKEAGYAVQGAMLRFWPDDRPK 59 Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 CC+ +DARRV D I+V Y+ D E+F VI PF +Y AG TP PCV CN Sbjct: 60 GAFDLCCSPDAAFDARRVADAIDVPFYLLDAREQFDEVVISPFVPTYEAGRTPNPCVWCN 119 Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181 R +KF L R+LG D +ATGHY+R DG + R D +DQ+YFL+A Sbjct: 120 REIKFGTFLKKARRLGCDYIATGHYVRRV-----DGPGGVELHRGEDDTKDQTYFLWALE 174 Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQ--GKYFDVVKRINAGI 239 + L L FPLG + K VR+LA G ADK S +CF+ Y G Sbjct: 175 RSILPHLLFPLGALSKTQVRELAEARGFATADKRSSHGLCFITTSVKDYLRDFSERRPGA 234 Query: 240 ALEGDIVHLNG-QILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRES 297 L+ +G + +G H+G+ YTIGQRRGLG+ FVV L ++ VIVG RE Sbjct: 235 VLDA----SDGFKKVGEHSGVQFYTIGQRRGLGLYHSHLERFVVDLRSETNEVIVGTREM 290 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV 357 + + NWL DA + V+ R Q PVP V+ + + F++ Sbjct: 291 CHWRGLRAEQANWL-----LDAAEVPERVLVQTRYRQRPVPASVRLSGSSFELRFDEPMF 345 Query: 358 GVASGQACVFYTSDSNEARVLGGGIIS 384 V GQ+ V Y R+LGGG+I+ Sbjct: 346 AVTLGQSAVLYHG----TRLLGGGVIT 368 >gi|148377683|ref|YP_001256559.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma agalactiae PG2] gi|205816906|sp|A5IYK6|MNMA_MYCAP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|148291729|emb|CAL59115.1| TRNA(5 methylaminomethyl 2 thiouridylate) methyltransferase [Mycoplasma agalactiae PG2] Length = 374 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 116/381 (30%), Positives = 172/381 (45%), Gaps = 36/381 (9%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72 +V++ MSGGVDSSV A LL + GY+V G+ ++ ++S + G+ C QD Sbjct: 4 KKKVILGMSGGVDSSVCAYLLLKQGYEVEGLFMRNWDSMLNNDFLGNENISQDICPQEQD 63 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DA V + + + + D+ + N V F S Y AG TP P + CN+ +KF Sbjct: 64 YQDALEVANKLGIKLHRVDFVNEYWNDVFKTFISEYEAGRTPNPDILCNKYIKFKAFSDY 123 Query: 133 T-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +A GHY + DG+ + R D +DQ+YFL + +QL + P Sbjct: 124 AFNNLGADYIAMGHYAKV-----TDGR----LYRAKDQNKDQTYFLAQLSHEQLKRVLMP 174 Query: 192 LGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-N 249 L + KE VR +A+E L A K DS ICF+ + K+ ++ GDIV + Sbjct: 175 LAEFSSKEEVRKIAQEQDLITASKKDSTGICFIGERKFTKFLQNYIP--MQPGDIVDIRT 232 Query: 250 GQILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVGPRESLE---VHRIYL 305 + LG+H G YTIGQR+GL EP +V D + + V P L + Sbjct: 233 NKKLGKHEGCFYYTIGQRKGLNLGGQAEPYYVCGHDVKKNILYVAPSSDLSYLTSDALLA 292 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQA 364 + D D K R Q +PV ++ ++ + V + V GQ Sbjct: 293 TGLTLNHDDF------DHNNLSAKFRYRQQDIPVTIELLPNNTIKVYYPSESQAVTPGQQ 346 Query: 365 CVFYTSDSNEARVLGGGIISG 385 V Y + LGG +I Sbjct: 347 VVLYEG----QKCLGGAVIEK 363 >gi|227540270|ref|ZP_03970319.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sphingobacterium spiritivorum ATCC 33300] gi|227239914|gb|EEI89929.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sphingobacterium spiritivorum ATCC 33300] Length = 363 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 128/370 (34%), Positives = 204/370 (55%), Gaps = 18/370 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76 K RV+VAMSGGVDSSV A +L GY+VIG+T++ ++ S S ++ CC+ + DA Sbjct: 3 KRGRVLVAMSGGVDSSVAAVMLHEQGYEVIGITMKTWDYASSGGSSKETGCCSLDSINDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + H++ D + F + VI F Y AG TP PCV CN +K+ L+ +L Sbjct: 63 RALAVNYGFPHFILDIRDEFGDYVIDNFVDEYIAGRTPNPCVLCNTHIKWEALIKRANKL 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 + +ATGHY RL+ R ++ + D +DQSY L+ TQ+ L +FPLG Sbjct: 123 DCEFIATGHYANIRLH----ENGRHVISKGRDENKDQSYVLWGVTQENLARTQFPLGSFT 178 Query: 197 KESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQI 252 K+ +R +A +MG +++A+KS+S +ICFV Y ++ + G+ + +G + Sbjct: 179 KKEIRQMAADMGQMELANKSESYEICFVPDNDYRAFLRHKMPDLDEKVGPGNFILSDGTV 238 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G+H G +TIGQR+GLG+A+G+P+FV+ + S+ V++G LE + Y+R IN + Sbjct: 239 VGQHIGYPYFTIGQRKGLGIALGKPMFVIEILPESNSVMLGEEHELERAQAYVRNINLVK 298 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 ++ + + KIR + + D + VDFE G+A GQ+ VFY + Sbjct: 299 YA----SLSEPMEAVTKIRYKDSGALSTITQQGDIMKVDFEHYVKGIAPGQSAVFYEGND 354 Query: 373 NEARVLGGGI 382 ++GGG Sbjct: 355 ----LIGGGF 360 >gi|269114904|ref|YP_003302667.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma hominis] gi|268322529|emb|CAX37264.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma hominis ATCC 23114] Length = 370 Score = 411 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 112/380 (29%), Positives = 185/380 (48%), Gaps = 36/380 (9%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72 RVV+ MSGGVDSSV LL++ GYDV+G+ ++ ++S + G+ C QD Sbjct: 2 KKRVVLGMSGGVDSSVCGYLLQKQGYDVVGLFMRNWDSFLNNDILGNENITQNICPQEQD 61 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DA+ V +N+ Y D+ + + V Y G TP P + CN+ +KF Sbjct: 62 YLDAKAVASQLNIQLYRIDFVKEYWENVFNYLIDEYKKGRTPNPDIFCNKFIKFKAFSDY 121 Query: 133 T-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 ++L AD +A GHY + DG+ + R D +DQSYFL + QL + FP Sbjct: 122 AFKELKADYIAMGHYANAI-----DGE----LFRAQDDNKDQSYFLAQLSPDQLKKVIFP 172 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NG 250 L ++ K VR++A+++ L A K DS ICF+ + + ++ A G+I+ + +G Sbjct: 173 LANITKPEVREIAKQLNLSTAMKKDSTGICFIGERHFTKFLENYIP--AQPGNIIDIFSG 230 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRES---LEVHRIYLR 306 +++G+H G + YTIGQR+GL + E P FVV + + + V + L +++ Sbjct: 231 KVVGKHIGAMYYTIGQRKGLNLGGYEKPYFVVGHNLSKKEIYVTNDDHIDYLMSNKLIAT 290 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQAC 365 N + + K R Q + + ++ + + + V + +E V GQ Sbjct: 291 NFNQIS------KEFNFANLTAKFRYRQKDIKITLKILDGNKIEVCYPNTE-AVTPGQQV 343 Query: 366 VFYTSDSNEARVLGGGIISG 385 V Y + +V+GG II Sbjct: 344 VIYDGN----KVVGGAIIDK 359 >gi|163781841|ref|ZP_02176841.1| hypothetical protein HG1285_03123 [Hydrogenivirga sp. 128-5-R1-1] gi|159883061|gb|EDP76565.1| hypothetical protein HG1285_03123 [Hydrogenivirga sp. 128-5-R1-1] Length = 356 Score = 411 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 153/369 (41%), Positives = 210/369 (56%), Gaps = 20/369 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARR 78 MRV V MSGGVDSSV A L+K G++VIGVTL+ + + CC+ +DV DA R Sbjct: 1 MRVAVGMSGGVDSSVTALLMKEKGHEVIGVTLRFHTIEACEVEGTHNVCCSPKDVQDAAR 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137 V + + H FD+E F+ VI F Y+ G TP PC CNR VK R + Sbjct: 61 VSQKLGIPHLTFDWERIFKERVIDYFVEEYSRGRTPNPCAVCNREVKTGYFARYLRAVAD 120 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D LATGHY R + +D R++ R D +RDQSYFL ++ L L FPLG+M K Sbjct: 121 IDRLATGHYAR----IEEDPSFGRVIKRGTDRKRDQSYFLALVRREDLDLLEFPLGNMTK 176 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 E VR+LAR GL++ADK DSQ++CF+ + +++I EG+I H++G+ LGRH+ Sbjct: 177 EEVRELARSYGLEVADKRDSQEVCFLMGKSPGEYLEKIVGL--REGEIRHVSGKTLGRHS 234 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI N+TIGQRRGLG++ +PL+VV +D +++ V VG E L ++Y+RE+N Sbjct: 235 GIYNFTIGQRRGLGISYSKPLYVVDIDASTNTVFVGEEEYLYNDKLYVRELN------LH 288 Query: 318 DAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + +IR PV V V+R DG V F + G+ GQ FY+ D Sbjct: 289 VPMERWEDVSAQIRYRHSPVRVESVKRTSDGYEVKFREEVRGITPGQVVAFYSGDI---- 344 Query: 377 VLGGGIISG 385 +LGGGII Sbjct: 345 LLGGGIIEA 353 >gi|88608438|ref|YP_506353.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neorickettsia sennetsu str. Miyayama] gi|123491921|sp|Q2GDU3|MNMA_NEOSM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|88600607|gb|ABD46075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neorickettsia sennetsu str. Miyayama] Length = 371 Score = 411 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 170/370 (45%), Positives = 236/370 (63%), Gaps = 15/370 (4%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGSCCAGQDVY 74 K D++V+VAMSGGVDSS VAA L R GY VIGVTLQL+N+ +++ + +CCAG D++ Sbjct: 14 KAYNDVKVMVAMSGGVDSSTVAAYLHRVGYKVIGVTLQLHNNFTSTQTNRKTCCAGSDIF 73 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 DA+RV HYV + EE FR VI FA SY GETP+PCV CN+TVKF DL+ + + Sbjct: 74 DAKRVAAQFGFLHYVVNMEETFRKEVIENFAESYLKGETPVPCVKCNQTVKFRDLMKIAK 133 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 L D LATGHY+R + + +D +DQSYFLF TT++QL LRFPLG+ Sbjct: 134 SLSVDALATGHYVRRLT-----TTNGVELHKGIDPSKDQSYFLFNTTREQLEFLRFPLGN 188 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 +KK RDLAR++ +DI++K +SQDICFV Y DV+K+ G I+ +G++LG Sbjct: 189 LKKSETRDLARKLSVDISEKPESQDICFVNGKSYADVIKKFRPDAQRPGKILSTDGEVLG 248 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 HNG I+YTIGQR GL ++ PL+VV +D ++ +IVG R+ L+ +Y++E+NWL Sbjct: 249 THNGTIHYTIGQRHGLQLSAPIPLYVVKIDAQNNIIIVGTRDKLQQRSLYVKEVNWLD-- 306 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACVFYTSDSN 373 + G +C VK+RS D V ++ N + + V E+ + +A GQACV Y Sbjct: 307 --RKELTAGLECEVKLRSGADTVKGYLYPNGELLKVSLAEEPKCAIAPGQACVMYHG--- 361 Query: 374 EARVLGGGII 383 ++VLGGG I Sbjct: 362 -SKVLGGGWI 370 >gi|313772254|gb|EFS38220.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL074PA1] gi|313810119|gb|EFS47840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL083PA1] gi|313830448|gb|EFS68162.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL007PA1] gi|313833819|gb|EFS71533.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL056PA1] gi|314973449|gb|EFT17545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL053PA1] gi|314976129|gb|EFT20224.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL045PA1] gi|314983850|gb|EFT27942.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL005PA1] gi|315080547|gb|EFT52523.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL078PA1] gi|315095996|gb|EFT67972.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL038PA1] gi|327326276|gb|EGE68066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL096PA2] gi|327445830|gb|EGE92484.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL043PA2] gi|327448188|gb|EGE94842.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL043PA1] gi|328760764|gb|EGF74330.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL099PA1] Length = 360 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 144/375 (38%), Positives = 199/375 (53%), Gaps = 21/375 (5%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCDTINV 85 MSGGVDS+V AA L G+DV GV L L N R + CC+ +D +DARR D + + Sbjct: 1 MSGGVDSAVAAARLVEAGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFDARRAADRLGI 60 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145 YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG D +ATGH Sbjct: 61 PFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATGH 120 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y R+++ G + R +D +DQSY L Q QL FPLG+ K +VR A Sbjct: 121 YARTKVVDG-----VTKLYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKMNVRQEAA 175 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 +GL +ADK DS DICF+ G + + +G+I +G ++G HNG ++TIG Sbjct: 176 ALGLSVADKPDSNDICFIPDGDTRGWLSEKIG--SADGEIRDESGALVGHHNGYHHFTIG 233 Query: 266 QRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 QRRGL + G+P +V+ ++ ++ V+VG E L VH I W V Sbjct: 234 QRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWCS-----SEPV 288 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + + ++R+ DPVP + GV V+ E S GVA GQA VFY D V+G Sbjct: 289 ETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD----LVVGSA 344 Query: 382 IISGSKRSDAVEESL 396 I G+ R+ E Sbjct: 345 TICGTDRAGVKAEQA 359 >gi|326800569|ref|YP_004318388.1| tRNA-specific 2-thiouridylase mnmA [Sphingobacterium sp. 21] gi|326551333|gb|ADZ79718.1| tRNA-specific 2-thiouridylase mnmA [Sphingobacterium sp. 21] Length = 362 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 131/370 (35%), Positives = 200/370 (54%), Gaps = 18/370 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76 K R++VAMSGGVDSSV A +L GY+VIG+T++ ++ S S ++ CC+ + DA Sbjct: 3 KHGRILVAMSGGVDSSVAAVMLHEQGYEVIGLTMKTWDYASSGGSTKETGCCSLDSINDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + HY+ D + F + VI F Y AG TP PCV CN +K+ LL +L Sbjct: 63 RALAVGYGFPHYILDIRDEFGDFVINNFVDEYLAGRTPNPCVLCNTHIKWEALLKRADKL 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 + +ATGHY RL R ++ + D +DQSY L+ +Q+ L +FPLG Sbjct: 123 DCEFIATGHYANIRLQDS----GRYVISKGRDEHKDQSYVLWGVSQKNLARTKFPLGSFT 178 Query: 197 KESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252 K +R +A EMG +++A+KS+S +ICFV Y ++ I G+ + +G + Sbjct: 179 KAEIRQMALEMGQVELANKSESYEICFVPDNDYRSFLRHRVEDIDERIGAGNFILSDGTV 238 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G+H G YTIGQR+GLG+A+G P+FV+ + S+ V++G E L+ Y+R IN + Sbjct: 239 VGKHAGYPYYTIGQRKGLGIALGRPVFVIQILPESNTVVLGSEEELQKDTAYVRNINLI- 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + + + + KIR + + + VDFE G+A GQ+ VFY + Sbjct: 298 ---KYEHIPEPMEAVTKIRYKDAGAISRIVEENGSMKVDFEHYVKGIAPGQSAVFYEGND 354 Query: 373 NEARVLGGGI 382 +LGGG Sbjct: 355 ----LLGGGF 360 >gi|255023815|ref|ZP_05295801.1| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL J1-208] Length = 291 Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats. Identities = 113/301 (37%), Positives = 169/301 (56%), Gaps = 14/301 (4%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + N D+RVVV MSGGVDSSV A +LK GYDVIG+ ++ ++ + G C A +D Sbjct: 1 MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD---TDEFGVCTATEDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 D RV + I + +Y ++E+ + + V F Y G TP P V CN+ +KF L Sbjct: 58 DDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDVMCNKEIKFKAFLEHA 117 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 LGAD +ATGHY + + + + R +D +DQ+YFL +Q QL + FPLG Sbjct: 118 ESLGADYVATGHYAQVKKVGDE-----IELLRGVDNNKDQTYFLNQLSQDQLKKVMFPLG 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 M+K VR++A++ GL A+K DS ICF+ + + + A G++ LNG++L Sbjct: 173 GMEKTEVREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLP--AQPGEMRTLNGEVL 230 Query: 254 GRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREIN 309 G+H+G++ YTIGQR GLG+ GEP FVV D + + V E+L + +I+ Sbjct: 231 GKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHHETLYSDSLIATDIS 290 Query: 310 W 310 + Sbjct: 291 F 291 >gi|314972469|gb|EFT16566.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL037PA3] Length = 360 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 141/375 (37%), Positives = 196/375 (52%), Gaps = 21/375 (5%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCDTINV 85 MSGG+DS+V AA L G+DV GV L L N R + CC+ +D + ARR D + + Sbjct: 1 MSGGIDSAVAAARLVEAGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFAARRAADRLGI 60 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145 YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG D +ATGH Sbjct: 61 PFYVWDFSDRFAAEVIDPFIAEYQAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATGH 120 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y ++++ G + R +D +DQSY L Q QL FPLG+ K VR A Sbjct: 121 YAQAKVIDG-----VTKLYRSVDPGKDQSYVLAVLDQDQLAHSLFPLGNSLKTDVRQEAA 175 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 +GL +ADK DS DICF+ G + + +G+I +G ++GRHNG +TIG Sbjct: 176 ALGLSVADKPDSNDICFIPDGDTPGWLSEKIG--SADGEIRDESGALVGRHNGYHRFTIG 233 Query: 266 QRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 QRRGL + G+P +V+ ++ ++ V+VG E L V+ I W Sbjct: 234 QRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVYHIEAIRPVWCSGE-----PA 288 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 D + V++R+ DPVP + GV V+ E GVA GQA VFY D V+G Sbjct: 289 DTWHGQVQVRAHGDPVPATISTVPSGVSVELEDPLRGVAPGQAAVFYDGD----LVVGSA 344 Query: 382 IISGSKRSDAVEESL 396 I G+ R+ E Sbjct: 345 TICGTDRAGTTAEQA 359 >gi|313678598|ref|YP_004056338.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma bovis PG45] gi|312950108|gb|ADR24703.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma bovis PG45] Length = 374 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 116/381 (30%), Positives = 174/381 (45%), Gaps = 36/381 (9%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72 +V++ MSGGVDSSV A LL + GY+V G+ ++ ++S + G+ C QD Sbjct: 4 KKKVILGMSGGVDSSVCAYLLLKQGYEVEGLFMRNWDSMLNNDFLGNENISQDICPQEQD 63 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 +DA V + + + + D+ + N V F S Y AG TP P + CN+ +KF Sbjct: 64 YHDALEVANKLGIKLHRVDFVNEYWNDVFKTFISEYEAGRTPNPDILCNKYIKFKAFSDY 123 Query: 133 T-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LGAD +A GHY + DG+ + R D +DQ+YFL + +QL + P Sbjct: 124 AFNNLGADYIAMGHYAKV-----TDGR----LYRAKDQNKDQTYFLAQLSHEQLKRVLMP 174 Query: 192 LGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-N 249 L + KE VR +A+E GL A K DS ICF+ + K+ ++ GDIV + Sbjct: 175 LAEFNSKEEVRKIAQEQGLITASKKDSTGICFIGERKFTKFLQNYIP--MQPGDIVDIRT 232 Query: 250 GQILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVGPRESLE---VHRIYL 305 LG+H G YTIGQR+GL EP +V D + + V P L + Sbjct: 233 NNKLGKHEGCFYYTIGQRKGLNLGGQAEPYYVCGHDVKKNILYVAPSSDLSYLTSDALLA 292 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQA 364 + + D K R Q+ +PV ++ ++ + V + V GQ Sbjct: 293 TGLTLNHNDF------DHNNLSAKFRYRQENIPVTIELLPNNTIKVYYPSEAQAVTPGQQ 346 Query: 365 CVFYTSDSNEARVLGGGIISG 385 V Y + LGG +I Sbjct: 347 VVIYEG----QKCLGGAVIEK 363 >gi|313764363|gb|EFS35727.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL013PA1] gi|313792051|gb|EFS40152.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL110PA1] gi|313802000|gb|EFS43234.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL110PA2] gi|313812853|gb|EFS50567.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL025PA1] gi|313815901|gb|EFS53615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL059PA1] gi|313827583|gb|EFS65297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL063PA2] gi|313838822|gb|EFS76536.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL086PA1] gi|314915354|gb|EFS79185.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL005PA4] gi|314918090|gb|EFS81921.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL050PA1] gi|314920172|gb|EFS84003.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL050PA3] gi|314931695|gb|EFS95526.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL067PA1] gi|314955597|gb|EFS99998.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL027PA1] gi|314957994|gb|EFT02097.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL002PA1] gi|314962706|gb|EFT06806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL082PA1] gi|314967428|gb|EFT11527.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL037PA1] gi|315098625|gb|EFT70601.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL059PA2] gi|315101372|gb|EFT73348.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL046PA1] gi|315105724|gb|EFT77700.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL030PA1] gi|315108590|gb|EFT80566.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL030PA2] gi|327330347|gb|EGE72096.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL097PA1] gi|327450691|gb|EGE97345.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL087PA3] gi|327453231|gb|EGE99885.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL092PA1] gi|327453970|gb|EGF00625.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL083PA2] gi|328753227|gb|EGF66843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL025PA2] gi|328754110|gb|EGF67726.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL087PA1] Length = 360 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 144/375 (38%), Positives = 199/375 (53%), Gaps = 21/375 (5%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCDTINV 85 MSGGVDS+V AA L G+DV GV L L N R + CC+ +D +DARR D + + Sbjct: 1 MSGGVDSAVAAARLVEAGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFDARRAADRLGI 60 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145 YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG D +ATGH Sbjct: 61 PFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATGH 120 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y R+++ G + R +D +DQSY L Q QL FPLG+ K +VR A Sbjct: 121 YARTKVVDG-----VTKLYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKMNVRQEAA 175 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 +GL +ADK DS DICF+ G + + +G+I +G ++G HNG ++TIG Sbjct: 176 ALGLSVADKPDSNDICFIPDGDTPGWLSEKIG--SADGEIRDESGALVGHHNGYHHFTIG 233 Query: 266 QRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 QRRGL + G+P +V+ ++ ++ V+VG E L VH I W V Sbjct: 234 QRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWCS-----SEPV 288 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + + ++R+ DPVP + GV V+ E S GVA GQA VFY D V+G Sbjct: 289 ETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD----LVVGSA 344 Query: 382 IISGSKRSDAVEESL 396 I G+ R+ E Sbjct: 345 TICGTDRAGVKAEQA 359 >gi|197122790|ref|YP_002134741.1| tRNA-specific 2-thiouridylase MnmA [Anaeromyxobacter sp. K] gi|196172639|gb|ACG73612.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaeromyxobacter sp. K] Length = 351 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 154/366 (42%), Positives = 199/366 (54%), Gaps = 17/366 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR++VAMSGGVDSS AALL G++VIGVT+++ + A R SCCA DV DAR Sbjct: 1 MRILVAMSGGVDSSTAAALLAGHGHEVIGVTMRVADYSDA-ARGRSCCAPDDVEDARAAA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + YV + E RFR VI F Y G TP PCV CN VKF LL+ R LGA Sbjct: 60 RRLGIPFYVANVEARFRERVIDRFVDDYVEGRTPNPCVACNTEVKFDWLLARARALGA-K 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R ++ RR + D +DQSYFL+ Q L D+ FP+G + K V Sbjct: 119 LATGHYARV-----EERGGRRALLTAADPAKDQSYFLYGLGQDALRDVLFPVGALAKPVV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R A GL +ADK DSQ+ICFV +G D V G+IV G++LGRH+G+ Sbjct: 174 RAEAARAGLAVADKPDSQEICFVTRGDAGDYVALRAPARIRPGEIVSTAGEVLGRHDGVH 233 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +T+GQRRGLG+A P +VV LD ++RV+VG E R +RE +W+ Sbjct: 234 RFTVGQRRGLGIAGAVPRYVVRLDAAAARVVVGSAEEASRDRFEVREASWVSGA----PP 289 Query: 321 VDGFKCFVKIRSSQDPVPVFVQR--NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + VK+R + V+ G V + GVA GQA VFY D V+ Sbjct: 290 AGAVELRVKVRHRHEGERGTVRAVSGGAGAEVRLARPVRGVAPGQAAVFYAGD----EVV 345 Query: 379 GGGIIS 384 GGG I+ Sbjct: 346 GGGRIA 351 >gi|58584415|ref|YP_197988.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418731|gb|AAW70746.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contain the PP-loop ATPase domain [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 385 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 175/387 (45%), Positives = 239/387 (61%), Gaps = 20/387 (5%) Query: 3 VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKA 60 + + + L DK P + VVAMSGGVDSSV A LL R GY VIGVTLQLY + Sbjct: 15 MLKEFEIEPLLKDKVPHQTKAVVAMSGGVDSSVAAVLLHRLGYQVIGVTLQLYGADGNSN 74 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +++KG CCAGQD+YDA+RV + HY+ +YEE F+ VI FA +Y G+TP+PC+ C Sbjct: 75 TRKKGVCCAGQDIYDAKRVAEGTGFPHYILNYEEIFKKEVIESFAQTYIQGKTPIPCIKC 134 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N+TVKF DLL VTR LGADVL TGHY+R G+ +CR +D +DQSYFLFAT Sbjct: 135 NQTVKFRDLLQVTRNLGADVLITGHYVRRLEKNGE-----VKLCRGIDKSKDQSYFLFAT 189 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 T++QL LRFPLG K +VR LAR L I++K DSQDICFV + Y + ++ Sbjct: 190 TKEQLKLLRFPLGGFYKCNVRKLARYFSLPISEKPDSQDICFVSE-NYSKTIAKLAPQSI 248 Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300 +G IV +NG++LG HNGI+N+T+GQR+GLG+A EPL+VV ++ ++ ++VGP +L Sbjct: 249 QKGKIVDVNGKVLGEHNGIVNFTVGQRKGLGIAYSEPLYVVRINTKNNEIVVGPVNALMQ 308 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR--NDDGVYVDFEKSEVG 358 +I ++E+NWL + G + VK+RS + + YV Sbjct: 309 RKILVKELNWL------EQPKKGMEVTVKLRSLHSGSLAKIYPAKEQNKAYVILNDDYFS 362 Query: 359 VASGQACVFYTSDSNEARVLGGGIISG 385 ++ GQACV Y + +V+GGG I Sbjct: 363 ISPGQACVAYKDE----QVIGGGWICS 385 >gi|255324545|ref|ZP_05365662.1| tRNA-methyltransferase [Corynebacterium tuberculostearicum SK141] gi|255298451|gb|EET77751.1| tRNA-methyltransferase [Corynebacterium tuberculostearicum SK141] Length = 365 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 147/375 (39%), Positives = 198/375 (52%), Gaps = 24/375 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79 MRV+VAMSGGVDSSV AA G++VIGV L L+ + ++ K CC+ +D DARR+ Sbjct: 5 MRVLVAMSGGVDSSVAAARAVEAGHEVIGVHLALHKDAQQTREKARGCCSLEDSADARRI 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + + YV+D+ E F+ VI F SYA GETP PC+ CN +KF LL LG D Sbjct: 65 CDKLGIPFYVWDFSEEFKEEVITDFVDSYARGETPNPCLRCNEKIKFRALLQKGMALGFD 124 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + +DG M R +D +DQSY L + ++L FP+GD K Sbjct: 125 AVATGHYAT----IDEDG----YMRRSLDENKDQSYVLGVISAEELEHCFFPIGDTPKPQ 176 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R+ A G A K DS DICF+ G + G IV G L H+G Sbjct: 177 IREEAAAHGFSTAKKPDSYDICFIPDGNTQAFLGARIGL--RPGMIVDQEGTELKEHDGA 234 Query: 260 INYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 NYTIGQR+GL + A G P +V +D + V VG RE L V I + +L G+ Sbjct: 235 WNYTIGQRKGLDIKAPAADGRPRYVTDIDAATGTVTVGAREDLAVTSIQADLLKYLHPGM 294 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPV--FVQRNDDGVYVDFEKSEVGVASGQACVFY--TSD 371 D F+C V++R+ VP V R D + ++ ++ GVA GQA V Y + D Sbjct: 295 DGD-----FECEVQVRAHGSVVPCIAHVDREADEMRLELKEPLSGVARGQAAVLYLPSPD 349 Query: 372 SNEARVLGGGIISGS 386 V+G G I G+ Sbjct: 350 ELGDIVIGSGTICGT 364 >gi|205829099|sp|Q5GTC8|MNMA_WOLTR RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 371 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 175/387 (45%), Positives = 239/387 (61%), Gaps = 20/387 (5%) Query: 3 VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKA 60 + + + L DK P + VVAMSGGVDSSV A LL R GY VIGVTLQLY + Sbjct: 1 MLKEFEIEPLLKDKVPHQTKAVVAMSGGVDSSVAAVLLHRLGYQVIGVTLQLYGADGNSN 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +++KG CCAGQD+YDA+RV + HY+ +YEE F+ VI FA +Y G+TP+PC+ C Sbjct: 61 TRKKGVCCAGQDIYDAKRVAEGTGFPHYILNYEEIFKKEVIESFAQTYIQGKTPIPCIKC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N+TVKF DLL VTR LGADVL TGHY+R G+ +CR +D +DQSYFLFAT Sbjct: 121 NQTVKFRDLLQVTRNLGADVLITGHYVRRLEKNGE-----VKLCRGIDKSKDQSYFLFAT 175 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 T++QL LRFPLG K +VR LAR L I++K DSQDICFV + Y + ++ Sbjct: 176 TKEQLKLLRFPLGGFYKCNVRKLARYFSLPISEKPDSQDICFVSE-NYSKTIAKLAPQSI 234 Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300 +G IV +NG++LG HNGI+N+T+GQR+GLG+A EPL+VV ++ ++ ++VGP +L Sbjct: 235 QKGKIVDVNGKVLGEHNGIVNFTVGQRKGLGIAYSEPLYVVRINTKNNEIVVGPVNALMQ 294 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR--NDDGVYVDFEKSEVG 358 +I ++E+NWL + G + VK+RS + + YV Sbjct: 295 RKILVKELNWL------EQPKKGMEVTVKLRSLHSGSLAKIYPAKEQNKAYVILNDDYFS 348 Query: 359 VASGQACVFYTSDSNEARVLGGGIISG 385 ++ GQACV Y + +V+GGG I Sbjct: 349 ISPGQACVAYKDE----QVIGGGWICS 371 >gi|73666857|ref|YP_302873.1| tRNA(5-methylaminomethyl-2-thiouridylate)- methyl transferase [Ehrlichia canis str. Jake] gi|123615064|sp|Q3YSN0|MNMA_EHRCJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|72393998|gb|AAZ68275.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ehrlichia canis str. Jake] Length = 367 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 170/377 (45%), Positives = 230/377 (61%), Gaps = 17/377 (4%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +++ L +K+P VVVAMSGGVDSSV AALL + GY VIG+TLQLYN + KG C Sbjct: 6 KIDPLVKNKSPSSTTVVVAMSGGVDSSVAAALLHKLGYKVIGITLQLYN---NTSGKGGC 62 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 C D DA++V ++ HY +YE+ FR VI F +Y G+TP+PCV CN+ +KF Sbjct: 63 CGSTDTQDAKQVASSMGFPHYTLNYEKAFREEVIENFIDTYTQGKTPIPCVKCNQVIKFR 122 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL+ T+ LGADVL TGHYIR DD D ++DQSYFLFATT +QL Sbjct: 123 DLLNTTKSLGADVLVTGHYIRK--VEQDDEIYVY---SSKDTKKDQSYFLFATTIEQLKF 177 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 LRFPLG+ K+++R LA+ L +A K DSQ+ICFV Y + + + +G I+ Sbjct: 178 LRFPLGNFHKDNIRKLAKYFNLSVAAKPDSQNICFVTDT-YKNTIAHLRPQTVKKGHIID 236 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 NG ILG HNGI+N+TIGQRRG+G+A EPL+V L+ +++ V VGP+ +L +++++ + Sbjct: 237 TNGNILGEHNGIVNFTIGQRRGIGLASKEPLYVTKLNPDTNEVTVGPKSALLQNKLHIED 296 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366 INWL L + G VK+RSS + ND + V + + V GQACV Sbjct: 297 INWL---LKDKIPYSGLSVKVKLRSSHSGSTAIIYPNDMNKATVILQDTYCTVTPGQACV 353 Query: 367 FYTSDSNEARVLGGGII 383 Y D R+LGGG I Sbjct: 354 VYDGD----RMLGGGWI 366 >gi|167957606|ref|ZP_02544680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [candidate division TM7 single-cell isolate TM7c] Length = 340 Score = 410 bits (1055), Expect = e-112, Method: Composition-based stats. Identities = 118/367 (32%), Positives = 179/367 (48%), Gaps = 32/367 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+V V MSGGVDSS+ AALL G++V GV ++ ++ + C D+ DA+RV Sbjct: 1 MKVFVGMSGGVDSSLTAALLIERGHNVTGVYMKNWSQDLPGMK---CPWADDLADAKRVA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + V+D+E+ +R V+ S+Y+ G TP P + CN+ VKF L GAD+ Sbjct: 58 VQLGIDLKVYDFEKEYRENVVEYMISAYSQGYTPNPDIMCNQEVKFKLFLETALADGADM 117 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY +R + D +DQ+YFL+ T Q L FPLG+ K+ V Sbjct: 118 IATGHYATTRDN---------RLFMASDANKDQTYFLYRVTSQALSKTFFPLGEYTKQKV 168 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259 R ++ + L A K DSQ ICFV + + + + GDI+ G+ +G H+G Sbjct: 169 RQMSEDRHLFTAKKKDSQGICFVGKIGIREFLSQYVD--TKPGDIIDQKTGKKIGTHDGA 226 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDGLF 316 I YTIGQR GL + G P +VV + S+ V V + + +W+ + Sbjct: 227 IFYTIGQRHGLNIGGGLPYYVVGKNMQSNEVYVSNDINHNGIWRSETKIESKHWINNVPK 286 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + +IR V + + G V F++ + +A GQ+ V Y + Sbjct: 287 DG------NYLARIRHRAPLVKITLL----GSKVIFDEPQRAIAPGQSVVIYDGE----E 332 Query: 377 VLGGGII 383 LGGGII Sbjct: 333 CLGGGII 339 >gi|313680731|ref|YP_004058470.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oceanithermus profundus DSM 14977] gi|313153446|gb|ADR37297.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Oceanithermus profundus DSM 14977] Length = 369 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 136/379 (35%), Positives = 197/379 (51%), Gaps = 25/379 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK---ASKRKGSCCAGQDVYD 75 K RV+VAMSGGVDSSV AALL GYDV+G ++ ++ + + + SCC + Sbjct: 2 KKPRVLVAMSGGVDSSVAAALLVEQGYDVVGAMMKFWSDEELAESCNSESSCCTPTAALE 61 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A V + + + DY E F ++ PF YAAG TP PCV CN VKF LL R Sbjct: 62 AGWVARQLGIPFELLDYRETFDERIVTPFLEGYAAGRTPNPCVWCNTDVKFDALLEHARA 121 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 +GA+ +ATGHY+R +G + R D +DQ+YFL+ T + L L FP+G + Sbjct: 122 IGAEYVATGHYVRRV-----EGPAGVELWRGGDAAKDQTYFLWGTPRAALPHLLFPVGHL 176 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILG 254 +K +VR LA GL A K +SQ+ICFV +G D + + + G +V L G+++G Sbjct: 177 EKPAVRRLAEARGLITARKPESQNICFV-RGSLRDFLAKHIP--SEPGPLVDLESGEVIG 233 Query: 255 RHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G YT+GQR+GLG+ +VV + ++ V+VGPR ++E + +N Sbjct: 234 EHAGARFYTVGQRKGLGLWKSHLERYVVEVRPETNEVVVGPRAAVEWWGLEASGLN---- 289 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND---DGVYVDFEKSEVGVASGQACVFYTS 370 L D + +R PV V D + FE+ + VA GQ+ V Y Sbjct: 290 -LLLDPAGLPDRIEAMVRYRTRPVGARVLELDPTAGRFRLRFERPQFAVAPGQSVVLYAG 348 Query: 371 DSNEARVLGGGIISGSKRS 389 D R+LGGG I ++ + Sbjct: 349 D----RLLGGGFIERAREN 363 >gi|284097781|ref|ZP_06385771.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Poribacteria sp. WGA-A3] gi|283830707|gb|EFC34827.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Poribacteria sp. WGA-A3] Length = 372 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 137/383 (35%), Positives = 192/383 (50%), Gaps = 26/383 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS------KRKGSCCAGQDVYDARRVC 80 MSGGVDSSV A LL GYDV GVTLQ++ + + CC V AR V Sbjct: 1 MSGGVDSSVAALLLTEQGYDVQGVTLQVWEPEDDNAAVTKKWEERGCC---KVGLARHVA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + H V D E FR VI F + Y G TP PCV CN VKF L + + G D Sbjct: 58 GRLGIPHEVVDTRETFRKNVIDDFVAGYLGGTTPNPCVRCNEWVKFGGLYELAKDRGIDF 117 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R D+G + R D ++DQSYFL+ L + FP+G ++K V Sbjct: 118 VATGHYARVVPV--DEGVG---LFRGADGKKDQSYFLYRLPAAWLPHILFPVGHLQKTEV 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 A E+ L + +SQ+ICFV QG Y + G + G+ +G H GI Sbjct: 173 WARAEELDLPADEMKESQEICFVTQGDYRTFLTEEAPQALRPGPFLDPEGRKIGEHRGIA 232 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YT GQR+GLG+A GE L+V ++ ++ V++G E L ++++NWL D L E Sbjct: 233 FYTPGQRKGLGIARGERLYVKEVNPETNAVVLGRAEDLSRQTCTVQDVNWLADTLPETLD 292 Query: 321 VDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 +K R + V VQ + ++F++ + ++ GQ+ V Y +D RVLG Sbjct: 293 ----HVAIKYRYASPAVSGQVQPHTAGTLSIEFKEPQQALSPGQSLVLYQAD----RVLG 344 Query: 380 GGII---SGSKRSDAVEESLLSV 399 GGII + S A+ E+ S Sbjct: 345 GGIIQPFERHRNSAALSETPRSS 367 >gi|239616529|ref|YP_002939851.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Kosmotoga olearia TBF 19.5.1] gi|239505360|gb|ACR78847.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Kosmotoga olearia TBF 19.5.1] Length = 359 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 124/366 (33%), Positives = 195/366 (53%), Gaps = 17/366 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS---RKASKRKGSCCAGQDVYDARR 78 ++ VA+SGGVDS+V AA+LK +G+DV+G ++ ++K CC+ D D + Sbjct: 4 KIGVALSGGVDSAVAAAILKAEGHDVVGYHMKNLPDTLFELVPEKKKVCCSPSDTIDTHK 63 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + + FR +I F Y AG+TP PCV CN +KF L+ G Sbjct: 64 IAAKLGIELRIVKLNDIFRKEIIDYFIREYQAGKTPNPCVRCNDLMKFGALMEKAFGDGM 123 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + A+GHY R + K + R + +DQ+YFL +++L + FP G+M KE Sbjct: 124 EKFASGHYARIVEHP----KYGLSLARGVAKYKDQAYFLSRIKRRKLPYIIFPNGNMTKE 179 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +RD+ARE+GL + K +SQ++CF+ Y + G+IV L G +LGRH G Sbjct: 180 EIRDIARELGLPVHSKKESQELCFIPDNDYRRFLLE-EGIEIKPGEIVDLEGNVLGRHKG 238 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 + YT+GQRRGLG+ + L+VV LD + +RV+VGP+E++ + E NWL D ++ Sbjct: 239 LAFYTVGQRRGLGIVSDKKLYVVALDADKNRVVVGPKEAVMRKKFRAIEPNWLADLDEKE 298 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 +C +IRS+ ++ + V V+F+K + + GQ VFY + VL Sbjct: 299 -----LRCQCQIRSNMKAQGATIRIFSNIVEVEFDKPALAITPGQLAVFYDGNI----VL 349 Query: 379 GGGIIS 384 G I Sbjct: 350 GSAFIE 355 >gi|15829029|ref|NP_326389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma pulmonis UAB CTIP] gi|24638329|sp|Q98Q11|MNMA_MYCPU RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|14089973|emb|CAC13731.1| TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE [Mycoplasma pulmonis] Length = 371 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 119/377 (31%), Positives = 183/377 (48%), Gaps = 35/377 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 ++V+ +SGGVDSSV A LLK+ G++VIG+ ++ ++S S G+ C QD Sbjct: 3 KIVIGLSGGVDSSVAAYLLKQQGHEVIGLFMRNWDSLVNSDILGNSSLNQSLCPQEQDFQ 62 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133 DA RV I + Y D+ + + ++V Y G TP P + CN+ +KF + Sbjct: 63 DASRVAKQIGIPIYRVDFIKEYWDSVFENLIEQYQNGFTPNPDILCNKYIKFDKFFNYAI 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + GAD +A GHY ++ + R +D +DQSYFL Q L + FPLG Sbjct: 123 EKFGADYVAMGHYAIAKEGN---------LYRGIDQSKDQSYFLTQVRSQVLEKVIFPLG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252 +M+K VR +A+E L A+K DS ICF+ + K+ D ++ G IV + +I Sbjct: 174 NMEKSEVRRIAQEANLYTANKKDSTGICFIGERKFTDFLQNYIP--TQPGTIVDITTKKI 231 Query: 253 LGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 +G H G + YT+GQR+GL M EP FVV D +V V P ++ L + ++ + + Sbjct: 232 VGNHIGAMYYTLGQRKGLNLGGMKEPYFVVGHDLEKKQVFVAPASEKKWLTSNWLFAQNL 291 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVF 367 N + + K R Q V V V+ +D + V + + V GQ Sbjct: 292 N------LNNHDFNPENLSAKFRYRQKDVRVKVEFLENDQIKVYYPEGFEAVTPGQQIAL 345 Query: 368 YTSDSNEARVLGGGIIS 384 Y + LGG +I Sbjct: 346 YDG----QKCLGGAVIK 358 >gi|255532078|ref|YP_003092450.1| tRNA-specific 2-thiouridylase MnmA [Pedobacter heparinus DSM 2366] gi|255345062|gb|ACU04388.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pedobacter heparinus DSM 2366] Length = 363 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 126/370 (34%), Positives = 196/370 (52%), Gaps = 17/370 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76 K R++VAMSGGVDSSV A +L GY+VIG+T++ ++ + +S ++ CC+ + DA Sbjct: 3 KKGRILVAMSGGVDSSVAAVMLHEQGYEVIGLTMKTWDYATSGSSSKETGCCSLDSINDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + HY+ D + F + VI F Y AG TP PCV CN +K+ LL +L Sbjct: 63 RTLAVNYGFPHYILDIRDEFGDFVIDNFVDEYLAGRTPNPCVLCNTHIKWEALLKRANKL 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 + +ATGHY R R ++ + D +DQSY L+ +Q+ L +FPLG Sbjct: 123 DCEFIATGHYANIRQQDS----GRYVISKGKDENKDQSYVLWGVSQENLSRTQFPLGSFA 178 Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252 K +R +A +MG ++A KS+S +ICFV Y +K + G+ + NG + Sbjct: 179 KSEIRQMALDMGQEELAKKSESYEICFVPDNDYRAFLKHKVEDLEQRVAGGNFITSNGMV 238 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G+H G YTIGQR+GLG+A GEP+FV + S+ V++G + LE +R +N + Sbjct: 239 VGQHKGYPFYTIGQRKGLGIAFGEPMFVTQILPESNTVVLGRADELERKEAMVRNLNLVK 298 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + + + KIR + + + D + V F+ + +A GQ+ VFY + Sbjct: 299 YESIHEPMDN---VVTKIRYKDAGMLSTIVQEKDKMRVVFDHNVSAIAPGQSAVFYEGND 355 Query: 373 NEARVLGGGI 382 +LGGG Sbjct: 356 ----LLGGGF 361 >gi|15806762|ref|NP_295482.1| tRNA-specific 2-thiouridylase MnmA [Deinococcus radiodurans R1] gi|6459532|gb|AAF11314.1|AE002017_5 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Deinococcus radiodurans R1] Length = 413 Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats. Identities = 135/377 (35%), Positives = 203/377 (53%), Gaps = 19/377 (5%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 + + RV+ AMSGGVDSSV A+LLK GY VIG ++ + K + SCC+ Y Sbjct: 47 SRAAQGERVLCAMSGGVDSSVTASLLKEQGYQVIGAMMRFWPDDKRTDTFDSCCSPDAAY 106 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 +ARRV + + V Y+ DY E F+ ++ PF YA G TP PCV+CN VKF +L+ + Sbjct: 107 EARRVAEQVGVPFYLLDYREPFQRHIVGPFLEEYARGRTPNPCVNCNTKVKFDELVKKAK 166 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LG +ATGHY++ D+ + R D +DQ+YFL+ T + L + FP+G+ Sbjct: 167 MLGCRYVATGHYVKRV----DNAQGEVEFHRGDDPRKDQTYFLWGTPRDALPYILFPVGE 222 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQIL 253 ++K VR++A E GL A K +SQ+ICFV GK D V +G I + G+++ Sbjct: 223 LEKPQVREIAAERGLLTAQKPESQNICFVP-GKVQDFVAEHLPQA--QGYIREIATGEVV 279 Query: 254 GRHNGIINYTIGQRRGLGVAMGEP-LFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G H G YT+GQ++GLG+ VV+LD +S+ V VG + + + N+L Sbjct: 280 GEHLGTQFYTLGQKKGLGLYQSHRVRHVVHLDPDSNTVWVGDYDDCLWTGLKATDANYL- 338 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 D + V++R PV V + +G ++F + + VA GQ+ V Y Sbjct: 339 ----LDLAELPTELEVQVRYRTAPVKAHVLHADAEGFELEFAEPQFAVAPGQSAVLYAG- 393 Query: 372 SNEARVLGGGIISGSKR 388 +R+LGGG+I+ R Sbjct: 394 ---SRLLGGGLIADHAR 407 >gi|149921054|ref|ZP_01909513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Plesiocystis pacifica SIR-1] gi|149818058|gb|EDM77515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Plesiocystis pacifica SIR-1] Length = 367 Score = 409 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 154/375 (41%), Positives = 213/375 (56%), Gaps = 18/375 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGSCCAGQDVYDARRV 79 MRVV AMSGGVDSSV AAL+ G++VIG+T+ LY+++ K R G+CC+ ++ ARR Sbjct: 1 MRVVCAMSGGVDSSVAAALMVEAGHEVIGLTMALYDAKGERKGRGGTCCSPAEIDLARRA 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + V HY D ERF+ AVI FA Y AG TP PC CN VKF LL+ R LGA+ Sbjct: 61 CDLLGVPHYTVDERERFQAAVIDDFAREYLAGRTPNPCARCNEHVKFGPLLARARALGAE 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +L TGHY + DG+ + R +D +DQSYFLFA ++ L ++ FPLG K Sbjct: 121 LLVTGHYAQIV-----DGEAGPALHRGVDASKDQSYFLFAMGRETLAEVAFPLGAWSKAQ 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL------EGDIVHLNGQIL 253 VR+ ARE+G+ AD DSQ++CFV G + +VV+ + L G I +G +L Sbjct: 176 VREKARELGMPNADAPDSQELCFVPGGDHGEVVEARAKALGLDTARLEPGPIRDESGAVL 235 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G H GI T+GQRRGLGV+ P +V+ + + V+VG E LEV + + + L D Sbjct: 236 GEHRGIHRVTVGQRRGLGVSADRPRYVLRVLPSERAVVVGDPEGLEVRELMVGDFRALAD 295 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 + + V++R P V+ +G + V F++ VA GQA V Y + Sbjct: 296 LPVGEPIA----ARVQVRHRSAASPATVEILGEGALKVRFDQPIRAVAPGQAAVVYAGER 351 Query: 373 N-EARVLGGGIISGS 386 + RVLGGG I + Sbjct: 352 DAGDRVLGGGWIRSA 366 >gi|237785842|ref|YP_002906547.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium kroppenstedtii DSM 44385] gi|259495826|sp|C4LJJ9|MNMA_CORK4 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|237758754|gb|ACR18004.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Corynebacterium kroppenstedtii DSM 44385] Length = 372 Score = 409 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 146/372 (39%), Positives = 199/372 (53%), Gaps = 23/372 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDSSV AA L +G++VIGV L L S + R GS CC+ +D DARR Sbjct: 1 MRVMAAMSGGVDSSVAAARLVAEGHEVIGVHLAL-ASTPTTLRVGSRGCCSLEDSGDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ +RFR V+ PF +SY GETP PC+ CN +KF LL LG Sbjct: 60 VADALGIPFYVWDFSDRFREDVVDPFINSYEMGETPNPCLRCNEKIKFQALLDRGIALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R + DG+ + R +D +DQSY L +QL FPLGD +K Sbjct: 120 DAVATGHYARLK-----DGE----LRRAIDDNKDQSYVLGVLNDEQLAHCLFPLGDTRKP 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R A GL A K DS DICF+ G + GD+ +G ++G H+G Sbjct: 171 DIRKEAEAAGLVTASKPDSHDICFIPDGNTKAFLGNHIG--VRSGDLKDQDGNVIGHHDG 228 Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 I +TIGQR+GLG+ G+P +V +D ++ V VG R+ L V R+Y + Sbjct: 229 IYGFTIGQRKGLGLPGPAPDGKPRYVTDIDADTGTVTVGTRDDLRVGRLYADRL-----I 283 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 ++ +C V++R+ V V +D +D GVA GQA V Y D + Sbjct: 284 RLDEHEGSTQECQVQVRAHGGVVDATVTIDDGVATIDLHSPLTGVARGQAAVIYRPDPDG 343 Query: 375 ARVLGGGIISGS 386 VLG G I + Sbjct: 344 DIVLGSGTICDT 355 >gi|313807611|gb|EFS46098.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL087PA2] gi|313818648|gb|EFS56362.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL046PA2] gi|313820418|gb|EFS58132.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL036PA1] gi|313822776|gb|EFS60490.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL036PA2] gi|313825290|gb|EFS63004.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL063PA1] gi|314925110|gb|EFS88941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL036PA3] gi|314960438|gb|EFT04540.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL002PA2] gi|314978611|gb|EFT22705.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL072PA2] gi|314988029|gb|EFT32120.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL005PA2] gi|314989840|gb|EFT33931.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL005PA3] gi|315084219|gb|EFT56195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL027PA2] gi|315085563|gb|EFT57539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL002PA3] gi|315088383|gb|EFT60359.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL072PA1] gi|327443626|gb|EGE90280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL013PA2] gi|328753381|gb|EGF66997.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL020PA1] Length = 360 Score = 409 bits (1053), Expect = e-112, Method: Composition-based stats. Identities = 144/375 (38%), Positives = 199/375 (53%), Gaps = 21/375 (5%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCDTINV 85 MSGGVDS+V AA L G+DV GV L L N R + CC+ +D +DARR D + + Sbjct: 1 MSGGVDSAVAAARLVEAGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFDARRAADRLGI 60 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145 YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG D +ATGH Sbjct: 61 PFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATGH 120 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y R+++ G + R +D +DQSY L Q QL FPLG+ K +VR A Sbjct: 121 YARTKVVDG-----VTKLYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKMNVRQEAT 175 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 +GL +ADK DS DICF+ G + + +G+I +G ++G HNG ++TIG Sbjct: 176 ALGLSVADKPDSNDICFIPDGDTPGWLSEKIG--SADGEIRDESGALVGHHNGYHHFTIG 233 Query: 266 QRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 QRRGL + G+P +V+ ++ ++ V+VG E L VH I W V Sbjct: 234 QRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWCS-----SEPV 288 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + + ++R+ DPVP + GV V+ E S GVA GQA VFY D V+G Sbjct: 289 ETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD----LVVGSA 344 Query: 382 IISGSKRSDAVEESL 396 I G+ R+ E Sbjct: 345 TICGTDRAGVKAEQA 359 >gi|220917573|ref|YP_002492877.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaeromyxobacter dehalogenans 2CP-1] gi|219955427|gb|ACL65811.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaeromyxobacter dehalogenans 2CP-1] Length = 351 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 153/366 (41%), Positives = 198/366 (54%), Gaps = 17/366 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR++VAMSGGVDSS AALL G++VIGVT+++ + R SCCA DV DAR Sbjct: 1 MRILVAMSGGVDSSTAAALLAGHGHEVIGVTMRVADYSD-VARGRSCCAPDDVEDARAAA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + YV + E RFR VI F Y G TP PCV CN VKF LL+ R LGA Sbjct: 60 RRLGIPFYVANVEARFRERVIDRFVDDYVEGRTPNPCVACNTEVKFDWLLARARALGA-K 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R ++ RR + D +DQSYFL+ Q L D+ FP+G + K V Sbjct: 119 LATGHYARV-----EERGGRRALLTAADPAKDQSYFLYGLGQDALRDVLFPVGALAKPVV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R A GL +ADK DSQ+ICFV +G D V G+IV G++LGRH+G+ Sbjct: 174 RAEAARAGLAVADKPDSQEICFVTRGDAGDFVALRAPARIRAGEIVSTAGEVLGRHDGVH 233 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +T+GQRRGLG+A P +VV LD ++RV+VG E R +RE +W+ Sbjct: 234 RFTVGQRRGLGIAGAVPRYVVRLDAATARVVVGSAEEASRDRFEVREASWVSGA----PP 289 Query: 321 VDGFKCFVKIRSSQDPVPVFVQR--NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + VK+R + V+ G V + GVA GQA VFY D V+ Sbjct: 290 AGPVELRVKVRHRHEGERGTVRAVSGGAGADVRLARPVRGVAPGQAAVFYAGD----EVV 345 Query: 379 GGGIIS 384 GGG I+ Sbjct: 346 GGGRIA 351 >gi|256824827|ref|YP_003148787.1| tRNA-specific 2-thiouridylase MnmA [Kytococcus sedentarius DSM 20547] gi|256688220|gb|ACV06022.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Kytococcus sedentarius DSM 20547] Length = 416 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 143/410 (34%), Positives = 197/410 (48%), Gaps = 45/410 (10%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQD 72 L + + +RVV AMSGGVDS+V AA + G++V GV L L S + + CC +D Sbjct: 8 LPTDGRRLRVVAAMSGGVDSAVAAARMIDAGHEVTGVHLALSQSAETLRESARGCCTLED 67 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DARRV D + + YV+D ERFR VI F + Y AG TP PC+ CN ++KF+ LL Sbjct: 68 AGDARRVADALGIPFYVWDMAERFRRDVIEDFVAEYEAGRTPNPCLRCNESIKFAALLDK 127 Query: 133 TRQLGADVLATGHYIRSRLYVGD--DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 LG D +ATGHY + +G RR + R +D +DQSY L QL F Sbjct: 128 AVALGFDAVATGHYAQVVEVPDPAAEGGVRRELHRAVDAAKDQSYVLGVLDADQLARAHF 187 Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250 PLGD K +R+ A G +A K DS DICF+ G + G+IV G Sbjct: 188 PLGDTTKPQIREEAARRGFSVARKPDSHDICFIADGDTRAYLAERLGE--QPGNIVDPAG 245 Query: 251 QILGRHNGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 ++LG H G YT+GQR+GLG+ + G P +V+ D +++V+VGP+E L V I Sbjct: 246 RVLGTHGGAHGYTVGQRKGLGLRVPASDGAPRYVLRTDPATNQVVVGPKEMLGVDVIRAD 305 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND--------------------- 345 + W G A + +IR+ P V + Sbjct: 306 HVRWCG-----PAPEGETRLGAQIRAHGAEYPARVVVSGADASGSLLSGPGRSEPGDGEI 360 Query: 346 ------DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389 GV V ++ GVA GQ+ V Y RV+G I+ + RS Sbjct: 361 AATAGHQGVTVFLDELVRGVAPGQSVVLYDG----TRVVGSATITATDRS 406 >gi|226226536|ref|YP_002760642.1| tRNA-specific 2-thiouridylase MnmA [Gemmatimonas aurantiaca T-27] gi|226089727|dbj|BAH38172.1| tRNA-specific 2-thiouridylase MnmA [Gemmatimonas aurantiaca T-27] Length = 381 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 148/393 (37%), Positives = 208/393 (52%), Gaps = 24/393 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 PK RV+VAMSGGVDSSV AA+L G DV+GVT++L+ + CC+ DA Sbjct: 5 PPKGARVLVAMSGGVDSSVAAAILMEHGCDVVGVTMKLHGDGADVPDRP-CCSLDATSDA 63 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RRVC+ + + HYV + + F + V+ F YA G TP+PCV CN KF DLL + Sbjct: 64 RRVCEKLGIPHYVTNLVDHFSHDVLDDFVQEYARGRTPIPCVRCNTFTKFRDLLHKADAI 123 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 A LATGHY R G + +M R +D +DQSYFL+ + L L P+G Sbjct: 124 DAPWLATGHYARIGHRHG-----QAVMVRGLDTSKDQSYFLWGIDRPVLDRLVLPIGAQT 178 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA---LEGDIVHLNGQIL 253 K RD+AR GL A+K +SQDICFV G + V+ A G + +G+I+ Sbjct: 179 KAETRDIARRFGLRTAEKIESQDICFVPDGDHVRVIAEHLGADAPALQPGPLRLASGEII 238 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G H G +TIGQR+GL EP+FVV + + V+VGPRE+L + RE+NWL Sbjct: 239 GEHQGFARFTIGQRKGLPGGFAEPMFVVEIVPSERAVVVGPREALLGRGVEARELNWLA- 297 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 +A G + V++R+ P P V+ + G+ + +++ ++ GQ+ V + D Sbjct: 298 ----EAPPVGAQVQVQVRNRARPSPATIVRVDPQGIELALDEAVQAISPGQSLVVFDGDV 353 Query: 373 NEARVLGGGIISGSKRSDAVEESLLSVIGDEFP 405 VLGGGII R+ + V G P Sbjct: 354 ----VLGGGIIERGMRA-----APDRVPGKRLP 377 >gi|226356219|ref|YP_002785959.1| tRNA-specific 2-thiouridylase MnmA [Deinococcus deserti VCD115] gi|226318209|gb|ACO46205.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Deinococcus deserti VCD115] Length = 391 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 137/397 (34%), Positives = 204/397 (51%), Gaps = 19/397 (4%) Query: 3 VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62 ++ T ++ P+ RV+ AMSGGVDSSV AALLK GY V+G ++ + K Sbjct: 1 MTTVTPTSARTHSPAPQGERVLCAMSGGVDSSVTAALLKDQGYQVVGAMMRFWPDDKRVD 60 Query: 63 RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122 +CC+ Y+ARRV + + V Y+ DY E+F+ ++ PF YA G TP PCV+CN Sbjct: 61 TFDTCCSPDAAYEARRVAEQVGVPFYLLDYREQFQRHIVGPFLDEYARGRTPNPCVNCNT 120 Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 VKF +L+ + LG +ATGHY++ ++ R D +DQ+YFL+ T + Sbjct: 121 KVKFDELVKKAKMLGCRYVATGHYVKRV----ENAAGEVEFWRGDDPRKDQTYFLWGTPR 176 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 L + FP+G+++K VR +A E GL A K +SQ+ICFV GK D V Sbjct: 177 DALPYILFPVGELEKPQVRQIAEERGLLTARKPESQNICFVP-GKVQDFVAEHLPQAT-- 233 Query: 243 GDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEP-LFVVYLDKNSSRVIVGPRESLEV 300 G I + +G+++G H G YT+GQ++GLG+ VV+LD ++ V VG E Sbjct: 234 GFIREIASGEVVGEHLGTQFYTLGQKKGLGLYQSHRIRHVVHLDPATNTVWVGDYEDCMW 293 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGV 359 + N+L D D D V++R PV V ++ G ++F + + V Sbjct: 294 TGLRASSANYLLD--LRDLPQD---LEVQVRYRTAPVKARVVHADEHGFKLEFAEPQFAV 348 Query: 360 ASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESL 396 A GQ+ V Y R+LGGG+I R + Sbjct: 349 APGQSAVLYAG----PRLLGGGLIEDHSRDLPALQPA 381 >gi|32474336|ref|NP_867330.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodopirellula baltica SH 1] gi|81657396|sp|Q7TTZ4|MNMA_RHOBA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|32444874|emb|CAD74876.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodopirellula baltica SH 1] Length = 399 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 142/398 (35%), Positives = 204/398 (51%), Gaps = 46/398 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL-----------YNSRKAS--------- 61 RVV+AMSGGVDSSV A LL RDG++VIGV ++ + + + Sbjct: 3 RVVLAMSGGVDSSVAAHLLLRDGHEVIGVFMRHGEASAAACRIDSDEPQNTNPLNLPVLG 62 Query: 62 --------KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET 113 K CC+ D DARRV ++ + Y D +E FR ++ F Y A T Sbjct: 63 DSAGGKRADHKQGCCSATDAADARRVAMSMGIPFYSLDLQEDFRK-IVDYFVDDYLAART 121 Query: 114 PLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQ 173 P PCV CN +KF L + A+ +ATGHY R G R + R +D +DQ Sbjct: 122 PNPCVKCNHWIKFGRLFDYADGVDAEFVATGHYARMVHSNG-----RSELHRGLDGHKDQ 176 Query: 174 SYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK 233 SY LF +L + P+GD K +R++A +GL ++DK DSQ+ICFV QG + D VK Sbjct: 177 SYALFGIDPARLSRMMLPVGDFTKPEIREMATSLGLGVSDKKDSQEICFVTQGHHSDFVK 236 Query: 234 RINAGI--ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVI 291 + A G+IV G+++G H G +TIGQR+ LGVAMGEP FV+ ++ ++ RV+ Sbjct: 237 SRRPEMVGATAGEIVTTGGKVVGEHKGFEAFTIGQRKRLGVAMGEPHFVIRIEPDTRRVV 296 Query: 292 VGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND---DGV 348 +G E L + + NW + + + D ++IR + P P V + + Sbjct: 297 IGRAEELLRPGLVADQCNWF---VTREELADAQSVGIQIRYNGQPHPGHVVMDGSDPTRM 353 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 V F+ + VA GQA V Y + RVLGGG I+ + Sbjct: 354 KVMFDDPQAAVAPGQAAVVYDGE----RVLGGGWITHA 387 >gi|220906770|ref|YP_002482081.1| tRNA-specific 2-thiouridylase MnmA [Cyanothece sp. PCC 7425] gi|219863381|gb|ACL43720.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cyanothece sp. PCC 7425] Length = 368 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 140/385 (36%), Positives = 215/385 (55%), Gaps = 28/385 (7%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 + + ++ ++ VVV +SGGVDSSV AA L GY V+G+TL L K KG CC Sbjct: 1 MQNSGQNQTEQNKSVVVGLSGGVDSSVAAASLHHQGYRVVGLTLWLM------KGKGQCC 54 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 + + + DA ++C+ + V H++ D E F++ ++ + Y+ G TPLPC CNRTVKF Sbjct: 55 S-EGLVDAAQLCEELGVPHHIVDSRELFQSQIVDYLVAGYSDGITPLPCSQCNRTVKFGP 113 Query: 129 LLSVTR-QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 +L + +LG + +ATGHY R + D R + R +D +DQSYFL+ TQ L Sbjct: 114 MLHYAQTELGIETIATGHYARITV---DPQTGRYQLRRAVDRSKDQSYFLYDLTQAHLAH 170 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIV 246 FPLG+ K + R +A + L A+K +SQD+C ++ G + + ++G+IV Sbjct: 171 TLFPLGEQTKATTRQIAAQFNLHTAEKPESQDLCLIETHGSMQAFLDKYI--NPIQGEIV 228 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 G++LG H GI +YTIGQR+GLG+A +PL+V+ LD+ +RVIVG RE ++ Sbjct: 229 DRQGRVLGYHQGIHHYTIGQRKGLGIAAAQPLYVIGLDRAMNRVIVGDREEAVQSECTVQ 288 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV------QRNDDGVYVDFEKSEVGVA 360 +NW+ + + V+IR PVPV V + + V + F++ + G+ Sbjct: 289 RVNWVSIAPPDAPIA----AEVQIRYRSSPVPVTVVPLPEEEGRSNRVKLIFDQPQFGIT 344 Query: 361 SGQACVFYTSDSNEARVLGGGIISG 385 GQA V+Y D +LGGGI+ Sbjct: 345 PGQAAVWYQGDV----LLGGGILER 365 >gi|58616948|ref|YP_196147.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ehrlichia ruminantium str. Gardel] gi|75432674|sp|Q5FFJ0|MNMA_EHRRG RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|58416560|emb|CAI27673.1| Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ehrlichia ruminantium str. Gardel] Length = 370 Score = 409 bits (1051), Expect = e-112, Method: Composition-based stats. Identities = 169/377 (44%), Positives = 234/377 (62%), Gaps = 14/377 (3%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +++ L +K P VVAMSGGVDSSV AALL + GY VIG+TLQLYN+ K S KG+C Sbjct: 6 KIDLLVKNKPPTSTTAVVAMSGGVDSSVAAALLHKLGYKVIGITLQLYNNNKNSNTKGAC 65 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 C D DA++V ++ HY +YE+ FR VI F +Y G+TP+PC+ CN+ +KF Sbjct: 66 CGSLDTKDAKQVASSMGFPHYTLNYEKVFREEVIEDFIDTYTQGKTPIPCIKCNQVIKFR 125 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL+ T+ LGADVL TGHYIR D + D ++DQSYFLFATT +QL Sbjct: 126 DLLNATKSLGADVLVTGHYIRKIEQDDD-----IYVYSSKDTKKDQSYFLFATTVEQLRL 180 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 LRFPLG+ KE +R LA+ L +A+K DSQ+ICFV Y + + +G+I+ Sbjct: 181 LRFPLGNFHKEDIRKLAKYFNLQVANKPDSQNICFVTDT-YKKTIAELRPHTIKKGNIID 239 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 +NG IL +HNGI+N+TIGQR+G+G++ PL+V+ L+ +++ V VGP+ +L +++Y+RE Sbjct: 240 INGNILSQHNGIVNFTIGQRKGIGISSKAPLYVIKLNPDTNEVTVGPKSALLQNKLYIRE 299 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366 INWL E +G VK+RSS P + N++ + + S V GQACV Sbjct: 300 INWLA---KEKIPHNGLNVKVKLRSSHSGSPATIFPNNNNTATILLQDSYCTVTPGQACV 356 Query: 367 FYTSDSNEARVLGGGII 383 Y D R+LGGG I Sbjct: 357 IYDHD----RMLGGGWI 369 >gi|258646059|ref|ZP_05733528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dialister invisus DSM 15470] gi|260403430|gb|EEW96977.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dialister invisus DSM 15470] Length = 350 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 127/368 (34%), Positives = 191/368 (51%), Gaps = 27/368 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + +VVVAMSGGVDS++ A LL+ GYDV G T+ ++ GQD+ +A++ Sbjct: 3 EKKKVVVAMSGGVDSTLTARLLQEAGYDVYGATMNQFD-------------GQDMTEAQK 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137 + D + + H V D + +++ V+ F SY G TP PC+ C+ +KF R Sbjct: 50 IADFLGIPHKVIDVRKMYQDIVLSYFVDSYKNGITPNPCMMCDFKIKFGFFYDTVRAFFD 109 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 ATGHY R D +R+ + + DL +DQSY ++ TQ QL + FPLG + K Sbjct: 110 CPYFATGHYARITY---DGTRRKYQVEKATDLAKDQSYMMYHLTQDQLAHILFPLGRIYK 166 Query: 198 ESVRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 + R ++ E GL +K++SQDICF+ + Y + ++ G+I G+ILG H Sbjct: 167 KDTRRISEEKGLPTYNKAESQDICFLTSEKSYAEFLQNHAPEAFRPGNITDTKGRILGTH 226 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G+ YTIGQR+GLG+A PL+VV L +RVIVG + L + E+++ Sbjct: 227 KGLPFYTIGQRKGLGIASRTPLYVVSLHAGKNRVIVGSNDDLFRSGLLANELDFTDGA-- 284 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375 F+C KIR V ++ G V F++ + + GQ+ VFY E Sbjct: 285 --PPSQQFRCRAKIRYGIHVHNCTVTLDNHGRAAVKFDEPQRAITPGQSVVFY----EEN 338 Query: 376 RVLGGGII 383 R+LGGG I Sbjct: 339 RLLGGGTI 346 >gi|148557644|ref|YP_001265226.1| tRNA-specific 2-thiouridylase MnmA [Sphingomonas wittichii RW1] gi|148502834|gb|ABQ71088.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sphingomonas wittichii RW1] Length = 463 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 194/370 (52%), Positives = 244/370 (65%), Gaps = 20/370 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+VVAMSGGVDSSVVAAL G + IGVTLQLY+ A R GSCCAGQD+ DAR V D Sbjct: 108 RIVVAMSGGVDSSVVAALAAASGAETIGVTLQLYDHGAAVGRTGSCCAGQDIRDARAVAD 167 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + ++HYVFDYE RFR++VI FA YAAG TP+PCV CN+ VKF+DL + R LGAD L Sbjct: 168 RLGIAHYVFDYESRFRDSVIADFADEYAAGRTPIPCVRCNQGVKFTDLFGIARDLGADCL 227 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R + G R + R D RDQSYFLFATT+ QL LRFPLG M K VR Sbjct: 228 ATGHYVRRVVGAG----GRAELHRAADPARDQSYFLFATTRDQLDYLRFPLGAMPKPRVR 283 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A E+GL +A K DSQDICFV G Y +VKR+ A EG+IV L+G++LGRH G+I+ Sbjct: 284 EIAAELGLGVAAKPDSQDICFVPDGDYASIVKRLRPEAAEEGEIVGLDGRVLGRHRGLIH 343 Query: 262 YTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +T+GQRRG+ + EPL+VV L+ + R++VGPR +L V L ++NW+G+G Sbjct: 344 FTVGQRRGIEIGGSPEPLYVVRLEPETKRLVVGPRRALAVSAAMLDDVNWIGEGYEGP-- 401 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 K+RS PVP R +DG V F++ E GVA GQA V Y D RVLGG Sbjct: 402 -----LTAKVRSLAKPVPA---RFEDGA-VRFDQPEYGVAPGQAAVLYAGD----RVLGG 448 Query: 381 GIISGSKRSD 390 G I + ++ Sbjct: 449 GWIRATVPAE 458 >gi|315092805|gb|EFT64781.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL060PA1] Length = 360 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 144/375 (38%), Positives = 200/375 (53%), Gaps = 21/375 (5%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCDTINV 85 MSGGVDS+V AA L G+DV GV L L N R + CC+ +D +DARR D + + Sbjct: 1 MSGGVDSAVAAARLVEAGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFDARRAADRLGI 60 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145 YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG D +ATGH Sbjct: 61 PFYVWDFSDRFVVEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATGH 120 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y R+++ G + R +D +DQSY L Q QL FPLG+ K +VR A Sbjct: 121 YARTKVIDG-----VTKLYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKVNVRQEAA 175 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 +GL +ADK DS DICF+ G + + + +G+I +G ++G HNG ++TIG Sbjct: 176 ALGLSVADKPDSNDICFIPDGDTPGWLS--DKIGSADGEIRDESGALVGHHNGYHHFTIG 233 Query: 266 QRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 QRRGL + G+P +V+ ++ ++ V+VG E L VH I W V Sbjct: 234 QRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWCSGE-----PV 288 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + + ++R+ DPVP + GV V+ E S GVA GQA VFY D V+G Sbjct: 289 ETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAVVFYDGD----LVVGSA 344 Query: 382 IISGSKRSDAVEESL 396 I G+ R+ E Sbjct: 345 TICGTDRAGVKAEQA 359 >gi|327331848|gb|EGE73585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL096PA3] Length = 360 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 144/375 (38%), Positives = 200/375 (53%), Gaps = 21/375 (5%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCDTINV 85 MSGGVDS+V AA L G+DV GV L L N R + CC+ +D +DARR D + + Sbjct: 1 MSGGVDSAVAAARLVEAGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFDARRAADRLGI 60 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145 YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG D +ATGH Sbjct: 61 PFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATGH 120 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y R+++ G + R +D +DQSY L Q QL FPLG+ K +VR A Sbjct: 121 YARTKVVDG-----VTKLYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKMNVRQEAT 175 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 +GL +ADK DS DICF+ G + + + +G+I +G ++G HNG ++TIG Sbjct: 176 ALGLSVADKPDSNDICFIPDGDTPGWLS--DKIGSADGEIRDESGALVGHHNGYHHFTIG 233 Query: 266 QRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 QRRGL + G+P +V+ ++ ++ V+VG E L VH I W V Sbjct: 234 QRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWCS-----SEPV 288 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + + ++R+ DPVP + GV V+ E S GVA GQA VFY D V+G Sbjct: 289 ETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD----LVVGSA 344 Query: 382 IISGSKRSDAVEESL 396 I G+ R+ E Sbjct: 345 TICGTDRAGVKAEQA 359 >gi|311740584|ref|ZP_07714411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] gi|311304104|gb|EFQ80180.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium pseudogenitalium ATCC 33035] Length = 365 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 148/375 (39%), Positives = 199/375 (53%), Gaps = 24/375 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79 MRV+VAMSGGVDSSV AA G++VIGV L L+ + ++ K CC+ +D DARR+ Sbjct: 5 MRVLVAMSGGVDSSVAAARAVEAGHEVIGVHLALHKDAQQTREKARGCCSLEDSADARRI 64 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + + YV+D+ E F+ VI F SYA GETP PC+ CN +KF LL LG D Sbjct: 65 CDKLGIPFYVWDFSEEFKEEVITDFVDSYARGETPNPCLRCNEKIKFRALLQKGMALGFD 124 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + DG M R +D ++DQSY L + ++L FP+GD K Sbjct: 125 AVATGHYAT----IDKDG----YMRRSLDEKKDQSYVLGVISAEELEHCFFPIGDTPKPQ 176 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R+ A G A K DS DICF+ G + G IV G L H+G Sbjct: 177 IREEAAAHGFSTAKKPDSYDICFIPDGNTQAFLGARIGL--RPGMIVDQEGTELKEHDGA 234 Query: 260 INYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 NYTIGQR+GL + A G P +V +D + V VG RE L V I + +L G+ Sbjct: 235 WNYTIGQRKGLDIKAPAADGRPRYVTDIDAVTGTVTVGAREDLAVTSIQADRLKYLHPGM 294 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVF--VQRNDDGVYVDFEKSEVGVASGQACVFY--TSD 371 D F+C V++R+ VP V R D + ++ ++S GVA GQA V Y + D Sbjct: 295 DGD-----FECEVQVRAHGSVVPCTAHVDREADEMRLELKESLSGVARGQAAVLYLPSPD 349 Query: 372 SNEARVLGGGIISGS 386 V+G G I G+ Sbjct: 350 ELGDIVIGSGTICGT 364 >gi|293364049|ref|ZP_06610785.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma alligatoris A21JP2] gi|292552539|gb|EFF41313.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma alligatoris A21JP2] Length = 372 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 112/379 (29%), Positives = 177/379 (46%), Gaps = 35/379 (9%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72 RVV+ MSGGVDSSV A LLK GY+V+G+ ++ ++S + G+ C QD Sbjct: 3 KKRVVIGMSGGVDSSVAAYLLKEQGYEVVGLFMRNWDSLLNNDILGNEKITQDICPQEQD 62 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DA VC + + + D+ + + V F Y TP P + CN+ +KF+ Sbjct: 63 YQDALSVCQKLQIPLHRVDFVKEYWQNVFNNFIEEYKKARTPNPDILCNKYIKFNAFAKH 122 Query: 133 T-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 +L AD +A GHY DG+ + + D +DQ+YFL + +QL ++ P Sbjct: 123 AFNELKADYIAMGHYANVV-----DGR----LYKAKDENKDQTYFLAQLSHEQLKNVIMP 173 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250 L +++K +R +A E+ L A K DS ICF+ + + ++ A EGD+V+ + Sbjct: 174 LANLEKTQIRKIALELNLATAKKKDSTGICFIGERNFTKFLQNYIP--AHEGDVVNIITK 231 Query: 251 QILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLR 306 Q + +H G YTIGQR+GL + EP +V D + + V P E L+ + + Sbjct: 232 QKIAKHIGCFYYTIGQRKGLNLGGNSEPHYVCGHDVLKNILYVAPASSPEFLDSNSLIAS 291 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQAC 365 + ++ + VK R Q + V+ +D V + + V GQ Sbjct: 292 NLTLNHQNFNKENI------TVKFRYRQQEIKAIVEFLEDKKVKIIYNSKSQAVTPGQQV 345 Query: 366 VFYTSDSNEARVLGGGIIS 384 V Y + LGG II Sbjct: 346 VLYEG----QKCLGGAIIE 360 >gi|91203955|emb|CAJ71608.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 336 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 121/348 (34%), Positives = 182/348 (52%), Gaps = 16/348 (4%) Query: 40 LKRDGYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRN 98 + GY+V+G+ ++L A + CC+ +D DAR V + + + +V +++E F + Sbjct: 1 MVEQGYEVVGLFMRLGLEKLDAMTKTKVCCSLEDANDARTVAEQLGIQFHVLNFKEAF-D 59 Query: 99 AVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGK 158 +I F + Y G TP PC+ CN+ +KF LL+ + L AD +ATGHY + + Sbjct: 60 HIIDHFCTEYLNGRTPNPCIMCNQELKFGKLLNFAKMLNADFVATGHYAKVEKHND---- 115 Query: 159 RRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQ 218 R ++ + DL ++QSY LF+ Q+QL FPLG + KESVR +A+++ L DK +SQ Sbjct: 116 -RFLLKKGDDLNKEQSYVLFSLNQEQLSKTLFPLGTLTKESVRRIAKDLNLKTKDKPESQ 174 Query: 219 DICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPL 278 DICFV Y ++ + G I G ILG H G +TIGQR+GLGVA G P Sbjct: 175 DICFVLDNNYHSLLYERYGNHIIPGPIKDRQGNILGEHQGAPFFTIGQRKGLGVAFGSPR 234 Query: 279 FVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVP 338 +VV ++ + VI+G + LE + +NW+ E + KIR P Sbjct: 235 YVVDINPRENAVIIGTDKDLEETGLIASSLNWISVQQLELP----MEVQAKIRYHHMPAH 290 Query: 339 VFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385 V D V V F + + + GQA VFY +D+ V+GGG I Sbjct: 291 ATVSPFGTDKVRVHFNEPQKAITPGQAVVFYDNDT----VVGGGWIDR 334 >gi|306835899|ref|ZP_07468893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium accolens ATCC 49726] gi|304568224|gb|EFM43795.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium accolens ATCC 49726] Length = 361 Score = 408 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 146/375 (38%), Positives = 196/375 (52%), Gaps = 24/375 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79 MRV+VAMSGGVDSSV AA G+DV+GV L L+ + ++ K CC+ +D DARR+ Sbjct: 1 MRVLVAMSGGVDSSVAAARAVEAGHDVVGVHLALHKDAQQTREKARGCCSLEDSADARRI 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + + YV+D+ E F+ VI F SY+ GETP PC+ CN +KF LL LG D Sbjct: 61 CDKLGIPFYVWDFSEEFKEEVITDFVDSYSRGETPNPCLRCNEKIKFRALLQKGMALGFD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + DDG M R D +DQSY L + ++L FP+GD K Sbjct: 121 AVATGHYAT----LDDDG----YMRRSKDENKDQSYVLGVISAEELDHCFFPIGDTPKPQ 172 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R+ A G A K DS DICF+ G + G IV G L H+G Sbjct: 173 IREEAAAHGFSTAKKPDSYDICFIPDGNTQQFLGSRIGL--RPGMIVDQEGTELKEHDGA 230 Query: 260 INYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 NYTIGQR+GL + A G P +V +D + V VG RE L V I + +L G+ Sbjct: 231 WNYTIGQRKGLDIKAPAADGRPRYVTDIDAATGTVTVGAREDLAVTAIRADRLKYLHPGM 290 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPV--FVQRNDDGVYVDFEKSEVGVASGQACVFY--TSD 371 D F+C V++R+ VP V R D + ++ ++ GVA GQA V Y + D Sbjct: 291 DGD-----FECEVQVRAHGSVVPCIAHVDRAADSMRLELKEPLSGVARGQAAVLYLPSPD 345 Query: 372 SNEARVLGGGIISGS 386 V+G G I + Sbjct: 346 DLGDIVIGSGTICET 360 >gi|257094501|ref|YP_003168142.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047025|gb|ACV36213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 366 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 117/383 (30%), Positives = 180/383 (46%), Gaps = 34/383 (8%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 K VVV +SGGVDSSV A LLK G+ V+G+ ++ + + C + QD+ D Sbjct: 2 NKGKTVVVGLSGGVDSSVAALLLKEQGWHVVGLFMKNWEDDDTDE---YCSSRQDLVDVL 58 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 V D I + V ++ ++R V F + YAAG TP P V CN +KFS L ++G Sbjct: 59 SVADRIGIDVEVVNFASQYRERVFAHFLAEYAAGRTPNPDVLCNSEIKFSAFLEHALKIG 118 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A+ +ATGHY R + G + + D +DQSYFL QQQL FPL + K Sbjct: 119 AERIATGHYAGVREFQGA-----WQLLKAEDGTKDQSYFLHRLNQQQLAKTLFPLAGLYK 173 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRH 256 VR +A GL +A K DS ICF+ + + + + R +G+I L + ++LG H Sbjct: 174 REVRKMAAAAGLHLALKKDSTGICFIGERPFKEFLLRYLP--PKKGEIRGLDDDRLLGEH 231 Query: 257 NGIINYTIGQRRGLGVAM-----------GEPLFVVYLDKNSSRVIVGP---RESLEVHR 302 +G+ +TIGQR+GL + + FV D ++ + V +L + Sbjct: 232 DGVAYHTIGQRKGLHIGGVKGGKSGDSGDHDAWFVARKDIATNVLYVVQGHAHPALLADQ 291 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVAS 361 + +++W+ + + K R Q V+ D + F + + V Sbjct: 292 LTAGDLSWVAG----EPPHTHWVYTAKTRYRQADAACEVEHVDAHSCLISFAEPQWAVTP 347 Query: 362 GQACVFYTSDSNEARVLGGGIIS 384 GQ+ V Y LGGG+I+ Sbjct: 348 GQSVVVY----ESRVCLGGGVIA 366 >gi|253683532|ref|NP_001156660.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Bos taurus] gi|296486862|gb|DAA28975.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Bos taurus] Length = 417 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 119/388 (30%), Positives = 183/388 (47%), Gaps = 36/388 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV A+SGGVDS+V A LL+R GY V GV ++ ++S G C A +D DA RVC Sbjct: 6 HVVCAVSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEH---GVCTADRDCEDAYRVCR 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140 +++ Y + + N V F + Y G TP P + CN+ +KF + LGAD Sbjct: 63 ILDIPFRQVSYAKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFRCFFNYAVDNLGADA 122 Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQ 182 +ATGHY R+ L + +++ I + + D +DQ++FL Q Sbjct: 123 VATGHYARTSLEDEEVFQQKHIKRPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVPQ 182 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 + L FPLG++ K+ V+ +A E L + K +S ICF+ + + + + Sbjct: 183 EALRRTLFPLGELTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNFENFILEYLQ--PR 240 Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RES 297 G + + + ++LG H G YT+GQR +G + EP +VV D V+V P + Sbjct: 241 PGRFISIEDNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVDKDGAKGDVLVAPRTDHPA 299 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355 L + ++W+ + V D +C + R VP + N DG V+V K+ Sbjct: 300 LYRDLLRTGRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVKA 359 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383 +A GQ VFY D LG G I Sbjct: 360 VRALAPGQFAVFYKGD----ECLGSGKI 383 >gi|189347539|ref|YP_001944068.1| tRNA-specific 2-thiouridylase MnmA [Chlorobium limicola DSM 245] gi|189341686|gb|ACD91089.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobium limicola DSM 245] Length = 358 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 136/372 (36%), Positives = 193/372 (51%), Gaps = 25/372 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAGQDVYDARRVCD 81 VV +SGGVDS+V A LL R GY V G+ +++ ++ + S D D + Sbjct: 7 VVTGISGGVDSAVAACLLHRQGYRVTGINIRILDTPVDNPSLQPSRLVISDHPDFQ---- 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + +F +AVI F Y +G TP PC+ CN+T+K+ LL R L A+++ Sbjct: 63 ---IPVFSLNLSAKFFDAVIRYFRDDYLSGRTPNPCMVCNKTIKWYGLLEAARMLEAEMI 119 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R+ G R + + D E+DQSYFL+ +Q L PLG + K VR Sbjct: 120 ATGHYARTSFSDG-----RYRLMKGCDPEKDQSYFLWMLSQADLSKTLLPLGALTKPEVR 174 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRHNG 258 +LAR G+ A+K +SQ+ICFV Y +K G+ E G+IV +G +LG H G Sbjct: 175 ELARTFGVRAAEKKESQEICFVPNDDYCSYLKNSIPGLEQEVAGGEIVDADGNVLGHHRG 234 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 YTIGQRRGLG+ +PL+V LD +R+ VG + LE + +NW+G + Sbjct: 235 YPFYTIGQRRGLGIPAPKPLYVTGLDARHNRIRVGGKADLECRALTASGLNWIGI----E 290 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 A F+ +IR P V+ + V FE + GV GQA VFY SD V Sbjct: 291 APSSPFETAARIRYRDKESPCTVEPIGGNKATVTFETPKHGVTPGQAVVFYRSD----EV 346 Query: 378 LGGGIISGSKRS 389 LGGG I + + Sbjct: 347 LGGGFIDQTHQP 358 >gi|327543019|gb|EGF29466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodopirellula baltica WH47] Length = 399 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 143/398 (35%), Positives = 204/398 (51%), Gaps = 46/398 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL---------YNSRKAS----------- 61 RVV+AMSGGVDSSV A LL RDG++VIGV ++ +S + Sbjct: 3 RVVLAMSGGVDSSVAAHLLLRDGHEVIGVFMRHGEASAAACRIDSDEPQNANPLNLPVLG 62 Query: 62 --------KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGET 113 K CC+ D DARRV ++ + Y D +E FR ++ F Y A T Sbjct: 63 DSAGGKRADHKQGCCSATDAADARRVAMSMGIPFYSLDLQEDFRK-IVDYFVDDYLAART 121 Query: 114 PLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQ 173 P PCV CN +KF L + A+ +ATGHY R G R + R +D +DQ Sbjct: 122 PNPCVKCNHWIKFGRLFDYADGVDAEFVATGHYARMVHSNG-----RSELHRGLDGHKDQ 176 Query: 174 SYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVK 233 SY LF +L + P+GD K +R++A +GL ++DK DSQ+ICFV QG + D VK Sbjct: 177 SYALFGIDPARLSRMMLPVGDFTKPEIREMATSLGLGVSDKKDSQEICFVTQGHHSDFVK 236 Query: 234 RINAGI--ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVI 291 + A G+IV G+++G H G +TIGQR+ LGVAMGEP FV+ ++ ++ RV+ Sbjct: 237 SRRPEMVGATAGEIVTTGGKVVGEHKGFEAFTIGQRKRLGVAMGEPHFVIRIEPDTRRVV 296 Query: 292 VGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND---DGV 348 +G E L + + NW + + + D ++IR + P P V + + Sbjct: 297 IGRAEELLRPGLVADQCNWF---VTREELADAQSVGIQIRYNGQPHPGHVVMDGSDPTRM 353 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 V F+ + VA GQA V Y + RVLGGG I+ + Sbjct: 354 KVMFDDPQAAVAPGQAAVVYDGE----RVLGGGWITHA 387 >gi|296114840|ref|ZP_06833488.1| tRNA-specific 2-thiouridylase MnmA [Gluconacetobacter hansenii ATCC 23769] gi|295978546|gb|EFG85276.1| tRNA-specific 2-thiouridylase MnmA [Gluconacetobacter hansenii ATCC 23769] Length = 358 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 181/378 (47%), Positives = 244/378 (64%), Gaps = 25/378 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR++VAMSGGVDSSVVAA L +G++V+G TLQLY+SR+ S RKG+CCAG+D++DARRV Sbjct: 1 MRILVAMSGGVDSSVVAARLVEEGHEVVGATLQLYDSRE-SARKGACCAGRDIHDARRVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + ++HYV D E RFR++VI FA +YA GETP+PCV CN+ VKF+DLL + R LG D Sbjct: 60 DRLGIAHYVIDAERRFRDSVIETFADAYAEGETPVPCVACNQGVKFTDLLGMARDLGVDA 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199 +ATGHY+R +G + + RP+D RDQS+FLFATT QQL LRFPLGDM K++ Sbjct: 120 MATGHYVRRI-----EGPQGVELHRPVDAGRDQSWFLFATTLQQLGFLRFPLGDMPDKDA 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A GL +A K DSQD+CF+ G Y +V+++ + G+IV L+G ++G H G+ Sbjct: 175 VRAEAERFGLAVAGKPDSQDLCFIPDGSYARLVEKLRPQTSGAGEIVDLSGNVVGTHEGV 234 Query: 260 INYTIGQRRGLGVA---MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 YT+GQ R LG A GE VV ++ RV++GPR + LR +NWL Sbjct: 235 ARYTVGQSRRLGDATMQGGERQMVVGIEPGRRRVVIGPRTQGVTRELRLRNMNWLV---- 290 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGV-ASGQACVFYTSDSNEA 375 + G +C V+IR+ + P V+R +DG V +++ V A GQACV Y Sbjct: 291 -EPPAQGLRCSVQIRAREAVRPATVRRTEDGASVLLDEA--AVPAPGQACVMYDG----T 343 Query: 376 RVLGGGIISGSKRSDAVE 393 RVLGGG I +R D+ Sbjct: 344 RVLGGGFI---RRHDSAA 358 >gi|162148152|ref|YP_001602613.1| tRNA-specific 2-thiouridylase MnmA [Gluconacetobacter diazotrophicus PAl 5] gi|205816818|sp|A9HMI3|MNMA_GLUDA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|161786729|emb|CAP56312.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Gluconacetobacter diazotrophicus PAl 5] Length = 361 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 186/377 (49%), Positives = 246/377 (65%), Gaps = 20/377 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR++VAMSGGVDSSVVAA L +G++V+G TLQLY+SR+ S RKG+CCAG+D++DARRV Sbjct: 1 MRIMVAMSGGVDSSVVAARLVAEGHEVVGATLQLYDSRE-SARKGACCAGRDIHDARRVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + HYV D E RFR +VI FA +YA GETP+PCV CN+ VKF+DLL + R LGA+ Sbjct: 60 DRLGIPHYVIDAETRFRQSVIETFADAYAGGETPVPCVACNQGVKFTDLLGIARDLGAEA 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199 +ATGHY+R G DG + RP+D RDQS+FLFATT+QQL LRFPLGDM K + Sbjct: 120 MATGHYVRR--IEGPDGAE---LHRPVDEGRDQSWFLFATTRQQLEFLRFPLGDMPDKAA 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A GL +A K DSQD+CFV G Y VV+ + +A EG+IV +G+++GRH+G+ Sbjct: 175 VRAEAERFGLSVAAKPDSQDLCFVPDGSYARVVEALRPEMAGEGEIVDGSGRVVGRHDGV 234 Query: 260 INYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 +T+GQ R LG A G VV +D S RV++GPR V + LR++NWL Sbjct: 235 TRFTVGQSRRLGDAAMRDGARQMVVGIDPASRRVVIGPRTGSAVRDLSLRDMNWL----- 289 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 D +C V+IR+ + P V+R DG V +++ + A GQACV Y +R Sbjct: 290 IDPPEGDLRCLVQIRAREAARPATVRRTADGASVTLDEAAM-PAPGQACVLYDG----SR 344 Query: 377 VLGGGIISGSKRSDAVE 393 VLGGG I + + A Sbjct: 345 VLGGGFIRRREMAGAAA 361 >gi|330993151|ref|ZP_08317089.1| tRNA-specific 2-thiouridylase mnmA [Gluconacetobacter sp. SXCC-1] gi|329759921|gb|EGG76427.1| tRNA-specific 2-thiouridylase mnmA [Gluconacetobacter sp. SXCC-1] Length = 376 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 184/389 (47%), Positives = 250/389 (64%), Gaps = 25/389 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K + MR++VAMSGGVDSSVVAA L +G++VIG TLQLY+SR+++ +KG+CCAG+D+ Sbjct: 4 IGKWNQAMRILVAMSGGVDSSVVAARLVDEGHEVIGATLQLYDSREST-KKGACCAGRDI 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 +DARRV D + + HYV D E RF ++VI FA +YAAGETP+PCV CN+ VKF+DLL + Sbjct: 63 HDARRVADRLGIPHYVIDAERRFHDSVIGTFADAYAAGETPVPCVACNQGVKFTDLLGMA 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 R+LG D +ATGHY+R G DG M RP+D RDQS+FLFATT+ QL LRFPLG Sbjct: 123 RELGVDAMATGHYVRR--VEGPDGPE---MHRPVDAGRDQSWFLFATTRDQLDFLRFPLG 177 Query: 194 DMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 DM K +VR A GL +A K DSQD+CFV G Y +V+++ + G+IV +GQ+ Sbjct: 178 DMPDKAAVRAEAERFGLAVAAKPDSQDLCFVTDGSYAGLVEKLRPDVTGAGEIVDQSGQV 237 Query: 253 LGRHNGIINYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 +GRH G+ YT+GQ R LG A G VV + S RV++GPR + LR++N Sbjct: 238 VGRHEGVTRYTVGQSRRLGNAAMRDGARQMVVGIQPASRRVVIGPRAQAVTRTLMLRDMN 297 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGV-ASGQACVF 367 WL DG +C V+IR+ + P + + + G V+ ++ V A GQACV Sbjct: 298 WL----VSPPGPDGLRCAVQIRAREAARPATIWQAGNGGARVELDEG--AVPAPGQACVL 351 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396 Y +RVLGGG I +R D+ E+ + Sbjct: 352 YDG----SRVLGGGFI---RRPDSEEKGV 373 >gi|121998186|ref|YP_001002973.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Halorhodospira halophila SL1] gi|166234856|sp|A1WWV9|MNMA_HALHL RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|121589591|gb|ABM62171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Halorhodospira halophila SL1] Length = 383 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 121/401 (30%), Positives = 184/401 (45%), Gaps = 31/401 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + ++PK R+VV +SGGVDS+V A L R G++VIG+ ++ + C A D+ Sbjct: 1 MTESPK--RIVVGLSGGVDSAVAALRLVRAGHEVIGLFMKNWEDDD---TLTQCSAEDDI 55 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 A V + + + ++ +R V AG TP P + CNR VKF L Sbjct: 56 AAAVAVAEHLGIPIRRVNFAAHYRREVFEHALQELRAGRTPNPDILCNRHVKFDRFLRHA 115 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 R+ AD +ATGHY R+ G G + R +D +DQSYFL +Q L +RFPL Sbjct: 116 REQFEADAVATGHYART----GRAGDGEPALLRGIDPSKDQSYFLAGVPRQALDAVRFPL 171 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 GD KE+VR AR L D+ DS ICF+ + + ++R G I+ +G+ Sbjct: 172 GDSTKETVRAEARSAALPNFDRPDSTGICFIGERDFTQFMQRYID--PHPGPILTEDGRE 229 Query: 253 LGRHNGIINYTIGQRRGLGVAMGE------PLFVVYLDKNSSRVIVGP---RESLEVHRI 303 +GRH G+ YT+GQRRGLG+ P +V D + + V L+ + Sbjct: 230 IGRHCGLAFYTLGQRRGLGIGGDRNRDSSAPWYVAGKDARRNALFVVQGHDHPWLQSAAV 289 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASG 362 +WL +G + ++R Q+P + + G V F++ + G Sbjct: 290 STEPFHWLAPV-----PAEGARLHAQVRYRQEPQAGQLSHAEGGRVVFRFDEPQRAATPG 344 Query: 363 QACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDE 403 Q V Y + + LGGG+I + +D L E Sbjct: 345 QHLVLYDRE----QCLGGGVIDTAHPADRSAPPALQTQSTE 381 >gi|14195297|sp|Q9RTK1|MNMA_DEIRA RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 380 Score = 408 bits (1049), Expect = e-111, Method: Composition-based stats. Identities = 135/377 (35%), Positives = 203/377 (53%), Gaps = 19/377 (5%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 + + RV+ AMSGGVDSSV A+LLK GY VIG ++ + K + SCC+ Y Sbjct: 14 SRAAQGERVLCAMSGGVDSSVTASLLKEQGYQVIGAMMRFWPDDKRTDTFDSCCSPDAAY 73 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 +ARRV + + V Y+ DY E F+ ++ PF YA G TP PCV+CN VKF +L+ + Sbjct: 74 EARRVAEQVGVPFYLLDYREPFQRHIVGPFLEEYARGRTPNPCVNCNTKVKFDELVKKAK 133 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LG +ATGHY++ D+ + R D +DQ+YFL+ T + L + FP+G+ Sbjct: 134 MLGCRYVATGHYVKRV----DNAQGEVEFHRGDDPRKDQTYFLWGTPRDALPYILFPVGE 189 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQIL 253 ++K VR++A E GL A K +SQ+ICFV GK D V +G I + G+++ Sbjct: 190 LEKPQVREIAAERGLLTAQKPESQNICFVP-GKVQDFVAEHLPQA--QGYIREIATGEVV 246 Query: 254 GRHNGIINYTIGQRRGLGVAMGEP-LFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G H G YT+GQ++GLG+ VV+LD +S+ V VG + + + N+L Sbjct: 247 GEHLGTQFYTLGQKKGLGLYQSHRVRHVVHLDPDSNTVWVGDYDDCLWTGLKATDANYL- 305 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 D + V++R PV V + +G ++F + + VA GQ+ V Y Sbjct: 306 ----LDLAELPTELEVQVRYRTAPVKAHVLHADAEGFELEFAEPQFAVAPGQSAVLYAG- 360 Query: 372 SNEARVLGGGIISGSKR 388 +R+LGGG+I+ R Sbjct: 361 ---SRLLGGGLIADHAR 374 >gi|205829107|sp|A5VFM2|MNMA_SPHWW RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 378 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 194/370 (52%), Positives = 244/370 (65%), Gaps = 20/370 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+VVAMSGGVDSSVVAAL G + IGVTLQLY+ A R GSCCAGQD+ DAR V D Sbjct: 23 RIVVAMSGGVDSSVVAALAAASGAETIGVTLQLYDHGAAVGRTGSCCAGQDIRDARAVAD 82 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + ++HYVFDYE RFR++VI FA YAAG TP+PCV CN+ VKF+DL + R LGAD L Sbjct: 83 RLGIAHYVFDYESRFRDSVIADFADEYAAGRTPIPCVRCNQGVKFTDLFGIARDLGADCL 142 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R + G R + R D RDQSYFLFATT+ QL LRFPLG M K VR Sbjct: 143 ATGHYVRRVVGAG----GRAELHRAADPARDQSYFLFATTRDQLDYLRFPLGAMPKPRVR 198 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A E+GL +A K DSQDICFV G Y +VKR+ A EG+IV L+G++LGRH G+I+ Sbjct: 199 EIAAELGLGVAAKPDSQDICFVPDGDYASIVKRLRPEAAEEGEIVGLDGRVLGRHRGLIH 258 Query: 262 YTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +T+GQRRG+ + EPL+VV L+ + R++VGPR +L V L ++NW+G+G Sbjct: 259 FTVGQRRGIEIGGSPEPLYVVRLEPETKRLVVGPRRALAVSAAMLDDVNWIGEGYEGP-- 316 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 K+RS PVP R +DG V F++ E GVA GQA V Y D RVLGG Sbjct: 317 -----LTAKVRSLAKPVPA---RFEDGA-VRFDQPEYGVAPGQAAVLYAGD----RVLGG 363 Query: 381 GIISGSKRSD 390 G I + ++ Sbjct: 364 GWIRATVPAE 373 >gi|31542641|ref|NP_060476.2| mitochondrial tRNA-specific 2-thiouridylase 1 [Homo sapiens] gi|8134740|sp|O75648|MTU1_HUMAN RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1; AltName: Full=MTO2 homolog gi|4469186|emb|CAB38414.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Homo sapiens] gi|17149283|gb|AAL35970.1| 5-methylaminomethyl-2-thiouridylate-methyltransferase [Homo sapiens] gi|17432490|gb|AAL38183.1| 5-methylaminomethyl-2-thiouridylate-methyltransferase [Homo sapiens] gi|54633233|dbj|BAD66875.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Homo sapiens] gi|119593828|gb|EAW73422.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase, isoform CRA_a [Homo sapiens] gi|158254860|dbj|BAF83401.1| unnamed protein product [Homo sapiens] Length = 421 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 122/412 (29%), Positives = 188/412 (45%), Gaps = 47/412 (11%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV A+SGGVDS+V A LL+R GY V GV ++ ++S G C A +D DA RVC Sbjct: 6 HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEH---GVCTADKDCEDAYRVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140 +++ + Y + + N V F + Y G TP P + CN+ +KFS LGAD Sbjct: 63 ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122 Query: 141 LATGHYIRSRLYVGDDGKRRR------------------IMCRPMDLERDQSYFLFATTQ 182 +ATGHY R+ L + +++ + + D +DQ++FL +Q Sbjct: 123 IATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQ 182 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 L FPLG + KE V+ +A E L + K +S +CF+ + + + + Sbjct: 183 DALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQ--PR 240 Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RES 297 G + + + ++LG H G YT+GQR +G + EP +VV D V V P + Sbjct: 241 PGHFISIEDNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVAPRTDHPA 299 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355 L + ++W+ + V D +C + R VP + N DG V+V ++ Sbjct: 300 LYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVQA 359 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII-----------SGSKRSDAVEESL 396 +A+GQ VFY D LG G I G +R+ ES Sbjct: 360 VRALATGQFAVFYKGD----ECLGSGKILRLGPSAYTLQKGQRRAGMATESP 407 >gi|194246580|ref|YP_002004219.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Phytoplasma mali] gi|193806937|emb|CAP18369.1| tRNA (5-methylaminomethyl-2-thioruidylate) methyltransferase [Candidatus Phytoplasma mali] Length = 385 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 118/385 (30%), Positives = 175/385 (45%), Gaps = 27/385 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQD 72 +V++ +SGGVDSSV A LLK+ GY V V ++ ++S KG+ C +D Sbjct: 2 KKKVIIGLSGGVDSSVAALLLKQKGYLVEAVFMKNWDSGLNFDIKGNPDIKELVCPQTKD 61 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DA ++ + + + D+ E + N V F S TP P V CN +KF+ Sbjct: 62 YQDALKISQQLEIKLHKVDFVEEYWNKVFKYFLDSLKKNLTPNPDVLCNNEIKFNVFTKY 121 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 D +ATGHY D + I+ + D +DQSYFL Q QL + FPL Sbjct: 122 VDTFKPDFIATGHYANIDY----DKNNKLILKKAFDTNKDQSYFLSQLKQHQLKKIIFPL 177 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G++ K VR++A++ GL A+K DS ICF+ + ++FD +K G + L+G Sbjct: 178 GNLTKPEVREIAKKAGLINANKKDSTGICFIGERRFFDFLKNYLP--MKPGKMKKLDGTY 235 Query: 253 LGRHNGIINYTIGQRRGLGVAMGE----PLFVVYLDKNSSRVIV---GPRESLEVHRIYL 305 L H G I YTIGQR+GLG+ + P FVV + + + V L + Sbjct: 236 LKEHRGTIYYTIGQRKGLGLGGCQFNQSPWFVVGKNLKKNILYVEQGSEHFYLYSDSALI 295 Query: 306 REINWLGD--GLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASG 362 ++ W G + E + K R Q + + N+ V V + + V G Sbjct: 296 VDVVWRGTIYDIQEQIKISKKNLNAKFRYRQLDQKISITWLNNTTVKVYYPQKIKAVTPG 355 Query: 363 QACVFYTSDSNEARVLGGGIISGSK 387 Q C FY D LG G+I Sbjct: 356 QICAFYLEDI----CLGSGMIKEVY 376 >gi|117927897|ref|YP_872448.1| tRNA-specific 2-thiouridylase MnmA [Acidothermus cellulolyticus 11B] gi|166234840|sp|A0LSQ2|MNMA_ACIC1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|117648360|gb|ABK52462.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidothermus cellulolyticus 11B] Length = 362 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 143/374 (38%), Positives = 196/374 (52%), Gaps = 21/374 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79 MRV+ AMSGGVDSSV AA + G++V+GV L L ++ ++ + CC+ +D DARR Sbjct: 1 MRVLAAMSGGVDSSVAAARMVDAGHEVVGVHLALSSTPRSHREGARGCCSLEDARDARRA 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + YV+D ERFR VI F + YA G TP PC+ CN +KF+ +L LG D Sbjct: 61 ADVLGIPFYVWDVAERFRQDVIEDFLAEYAQGRTPNPCLRCNERIKFAAVLDRALALGFD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 + TGHY R + G + + R D +DQSY L +Q QL FPLGD K Sbjct: 121 AVCTGHYARIQR-----GPQGLELHRAADSAKDQSYVLGVLSQPQLEHALFPLGDSLKTE 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A GL +ADK DS DICF+ G D ++ A GDIV +G+ LG H+G Sbjct: 176 VRAEAAARGLAVADKPDSHDICFIPDGDTADFLRSHLG--AAPGDIVDSSGRRLGSHDGA 233 Query: 260 INYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 +T+GQRRGL + G P +V+ + + V+VG + L V + W G Sbjct: 234 YQFTVGQRRGLRLGTPAPDGRPRYVLEVSPVTRTVVVGTADELSVTGLTGVRPIWCG--- 290 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 +C V+ R+ P V+ D V V+F GVA GQA VFY + Sbjct: 291 --PPPDAPLECTVQYRAHGAAAPAVVELRGDEVDVEFRAPVRGVAPGQAAVFY----ADT 344 Query: 376 RVLGGGIISGSKRS 389 RVLG I+ ++R+ Sbjct: 345 RVLGSATIARTRRA 358 >gi|209542792|ref|YP_002275021.1| tRNA-specific 2-thiouridylase MnmA [Gluconacetobacter diazotrophicus PAl 5] gi|209530469|gb|ACI50406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Gluconacetobacter diazotrophicus PAl 5] Length = 361 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 185/377 (49%), Positives = 246/377 (65%), Gaps = 20/377 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR++VAMSGGVDSSVVAA L +G++V+G TLQLY+SR+ S RKG+CCAG+D++DARRV Sbjct: 1 MRIMVAMSGGVDSSVVAARLVAEGHEVVGATLQLYDSRE-SARKGACCAGRDIHDARRVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + HYV D E RFR +VI FA +YA GETP+PCV CN+ VKF+DLL + R LGA+ Sbjct: 60 DRLGIPHYVIDAETRFRQSVIETFADAYAGGETPVPCVACNQGVKFTDLLGMARDLGAEA 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199 +ATGHY+R G DG + RP+D RDQS+FLFATT++QL LRFPLGDM K + Sbjct: 120 MATGHYVRR--IEGPDGAE---LHRPVDEGRDQSWFLFATTRRQLEFLRFPLGDMPDKAA 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A GL +A K DSQD+CFV G Y VV+ + +A EG+IV +G+++GRH+G+ Sbjct: 175 VRAEAERFGLSVAAKPDSQDLCFVPDGSYARVVEALRPEMAGEGEIVDGSGRVVGRHDGV 234 Query: 260 INYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 +T+GQ R LG A G VV +D S RV++GPR V + LR++NWL Sbjct: 235 TRFTVGQSRRLGDAAMRDGARQMVVGIDPASRRVVIGPRTGSAVRDLSLRDMNWL----- 289 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 D +C V+IR+ + P V+R DG V +++ + A GQACV Y +R Sbjct: 290 IDPPEGDLRCLVQIRAREAARPATVRRTADGASVTLDEAAM-PAPGQACVLYDG----SR 344 Query: 377 VLGGGIISGSKRSDAVE 393 VLGGG I + + A Sbjct: 345 VLGGGFIRRREMAGAAA 361 >gi|156551968|ref|XP_001600621.1| PREDICTED: similar to ENSANGP00000015341 [Nasonia vitripennis] Length = 395 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 102/376 (27%), Positives = 179/376 (47%), Gaps = 20/376 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V +SGGVDS+V A LLK G+ V G+ ++ ++ G C A +D DA+ +C Sbjct: 3 KKVIVGISGGVDSAVAALLLKSKGFKVTGIFMRNWDI---VNELGECQAEKDYEDAKWIC 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGAD 139 + + + + ++ + + N V +Y G+TP P + CN+ +KF+ R +LGAD Sbjct: 60 NRLKIPLHDVNFVKDYWNEVFSYLLENYEVGKTPNPDIQCNKKIKFNKFFHYARTELGAD 119 Query: 140 VLATGHYIRSRLYVGDDGKRR---RIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 +ATGHY R+ + + + R D +DQ++FL Q L FPLG+ Sbjct: 120 AIATGHYARNSFGSFLEDYKPDTNASLLRAKDSLKDQTFFLSQIPQLSLRRTMFPLGEYL 179 Query: 197 KESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254 K+ V+ +A+E L+I A+K +S ICF+ ++ D + G + G I+G Sbjct: 180 KKDVKKMAKEANLEILANKKESMGICFIGSRQFQDFIVEYVEE--KPGYFIDFKTGNIVG 237 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWL 311 +H GI +T+GQ +G + P FV D +++ + V +L + ++W+ Sbjct: 238 KHTGIHQWTLGQGCKIG-GLPSPYFVFRKDTDNNNIYVVAGSSHPALFSEFLVASNVHWI 296 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTS 370 + E + C + + VP V + + + + K + + GQ V Y Sbjct: 297 NEEPLELKNRKVYDCDFRFQHRNILVPCSVFKTTSNKLLIRLYKPKRAITPGQYAVLYAG 356 Query: 371 DSNEARVLGGGIISGS 386 + + LG I+ S Sbjct: 357 E----QCLGSAEITSS 368 >gi|45658118|ref|YP_002204.1| tRNA-specific 2-thiouridylase MnmA [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|45601360|gb|AAS70841.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 366 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 137/376 (36%), Positives = 208/376 (55%), Gaps = 13/376 (3%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDARRVCDTIN 84 MSGGVDS+V A LL DGY+VIGV L+ + K SCC+ +D+ DAR V ++ Sbjct: 1 MSGGVDSAVTAGLLMEDGYEVIGVNLRTWEYEAPACDTTKKSCCSPEDIRDARDVGISLK 60 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV E+ F+ VI F Y G+TP PCV+CN VKF L + LG D +ATG Sbjct: 61 IPFYVIKMEKVFQEKVIDRFIEDYQHGKTPNPCVECNTFVKFGALFEKAKALGIDKIATG 120 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY R R + +D+ ++Q+Y+L+ +Q+ L ++ FPLG+M K VR +A Sbjct: 121 HYARIARN-----GERYAIANGIDVGKNQAYYLYGLSQENLKNVIFPLGEMTKPEVRQIA 175 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI 264 R MGL +ADKS+SQ+ICF+ + Y +++ N G +G+I+G+H G N+TI Sbjct: 176 RRMGLPVADKSESQEICFIPENDYRKFLEKKN-VEFTPGFFKLKDGRIVGKHKGRENFTI 234 Query: 265 GQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGF 324 GQR+GLG+A PL+V+ ++ + VI+G + ++N+ G + + Sbjct: 235 GQRKGLGIAWKNPLYVISIE-DDGSVILGEENETYNESFSVIDLNFQGLAPLNEG--ESL 291 Query: 325 KCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 +C V++R P+ + + +G+ V + GV GQ+ VFY DS+ +L GGIIS Sbjct: 292 ECRVQVRYRHIPIRCKITKMKEGLIVHPLEDVRGVTPGQSAVFYPLDSD--YLLLGGIIS 349 Query: 385 GSKRSDAVEESLLSVI 400 V E +SV+ Sbjct: 350 KGSIQMRVAEPAISVL 365 >gi|86157907|ref|YP_464692.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaeromyxobacter dehalogenans 2CP-C] gi|123497474|sp|Q2IHX6|MNMA_ANADE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|85774418|gb|ABC81255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Anaeromyxobacter dehalogenans 2CP-C] Length = 351 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 155/366 (42%), Positives = 199/366 (54%), Gaps = 17/366 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR++VAMSGGVDSS AALL +G++VIGVT+++ + A R SCCA DV DAR Sbjct: 1 MRILVAMSGGVDSSTAAALLAGEGHEVIGVTMRVADYSDA-ARGRSCCAPDDVEDARAAA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + YV + E RFR VI F Y G TP PCV CN VKF LL+ R LGA Sbjct: 60 RRLGIPFYVANVEARFRERVIDRFVDDYVEGRTPNPCVACNTEVKFDWLLARARALGA-K 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R RR + D +DQSYFL+ Q L D+ FP+G + K +V Sbjct: 119 LATGHYARVEERG-----GRRRLLTAADPAKDQSYFLYGLGQDALGDVLFPVGALAKPAV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R A GL +A+K DSQ+ICFV G D V G+IV G++LGRH+G+ Sbjct: 174 RAEAARAGLAVAEKPDSQEICFVTLGDAGDFVALRAPARVRPGEIVSTAGEVLGRHDGVH 233 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +T+GQRRGLG+A P +VV LD ++RV+VG E R +RE W+ AV Sbjct: 234 RFTVGQRRGLGLAGPAPRYVVRLDAAAARVVVGSAEEASRDRFEVREATWVSGAPPGGAV 293 Query: 321 VDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + VK+R + V + G V + GVA GQA VFY D V+ Sbjct: 294 ----ELRVKVRHRHEGERGTVRARAGGAGAEVRLARPVRGVAPGQAAVFYDGD----EVV 345 Query: 379 GGGIIS 384 GGG I+ Sbjct: 346 GGGRIA 351 >gi|148240074|ref|YP_001225461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. WH 7803] gi|205828977|sp|A5GMJ9|MNMA_SYNPW RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|147848613|emb|CAK24164.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. WH 7803] Length = 389 Score = 407 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 144/400 (36%), Positives = 206/400 (51%), Gaps = 34/400 (8%) Query: 3 VSEATRLNSLDLDK---NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRK 59 V+ AT + LD+ P + RV V +SGGVDSS+ AALL G++V G+TL L + Sbjct: 7 VTAATPAGAEALDRLRHWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMS--- 63 Query: 60 ASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVD 119 KG+CC + + DA +C+ + + H+V D + F+ ++ Y AG TPLPC Sbjct: 64 ---GKGACC-AEGLVDAAGICEQLEIPHHVVDSRDTFQREIVNGLIEGYQAGITPLPCSR 119 Query: 120 CNRTVKFSDLLSVTRQL-GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLF 178 CNR VKFS +L ++ G +ATGHY R R D+ R + R +D +DQSYFL+ Sbjct: 120 CNRAVKFSPMLQWAQEKRGLARIATGHYARLRF---DETTGRWRLLRGLDARKDQSYFLY 176 Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINA 237 TQ+ L + FPLG++ K R A GL A K +SQD+C G + Sbjct: 177 DLTQEVLARVVFPLGELTKPDTRLEAARHGLRTAAKPESQDLCLADHHGSMRAFLDAYLP 236 Query: 238 GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES 297 +G+IV +G ++G H+GI ++TIGQR+GLGVA EPL VV LD +RV+V R+ Sbjct: 237 --PRQGEIVLQDGTVVGEHDGIEHFTIGQRKGLGVAWSEPLHVVRLDAAMNRVVVATRDQ 294 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-----------RNDD 346 + INW+ A V++R PVP + Sbjct: 295 AGRSHCVVGAINWVSMAPP--APEHSQMVQVQVRYRSAPVPARLTTMTAEASDAAAERPH 352 Query: 347 GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 +DF++ + + GQA VFY D+ VLGGG+I S Sbjct: 353 RCRLDFDEPQFSITPGQAAVFYDGDA----VLGGGLIQTS 388 >gi|32490853|ref|NP_871107.1| hypothetical protein WGLp104 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|30173418|sp|Q8D397|MNMA_WIGBR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|25166059|dbj|BAC24250.1| ycfB [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 368 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 123/378 (32%), Positives = 187/378 (49%), Gaps = 28/378 (7%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 K +V++A+SGGVDSSV A LK+ GY V GV ++ + +S + C +D+ DA+ Sbjct: 2 NKKKKVIIAISGGVDSSVSAWFLKKSGYHVEGVFMKNWEEINSSIK---CTFKKDLKDAQ 58 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQL 136 VCD I ++ + ++ E++ N V F Y G TP P + CN+ +KF L+ +++ Sbjct: 59 IVCDQIGININIVNFSEQYWNKVFKIFLREYKIGNTPNPDILCNKEIKFKYFLNFAIKEM 118 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD +ATGHY+R + + + DL++DQSYFL ++L FP+G++ Sbjct: 119 QADYIATGHYVRKI-----NFNGKSQLFSAFDLKKDQSYFLHQINYKELSKCIFPIGNIL 173 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A ++ L + K DS ICF+ + +K G I + +G H Sbjct: 174 KSKVRYIASKLNLITSKKRDSTGICFIGNKNFNKFIKNYLHDD--PGLIFSTEKKQIGTH 231 Query: 257 NGIINYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR+GL + +P +VV + + +IV L I + E Sbjct: 232 KGLMYYTIGQRKGLNIKKIYYNCHDPWYVVDKKIDKNYLIVSQGKNNPYLMSTSIIIIET 291 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVF 367 NW+ ++ + KC VK R Q+ V D + V F K VA GQ VF Sbjct: 292 NWIDQIYLKNPI----KCMVKTRYRQNSTLCLVIPIDKKSIEVIFYKPISSVAPGQYAVF 347 Query: 368 YTSDSNEARVLGGGIISG 385 Y D R LGGGII Sbjct: 348 YLLD----RCLGGGIIKS 361 >gi|84498222|ref|ZP_00997019.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Janibacter sp. HTCC2649] gi|84381722|gb|EAP97605.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Janibacter sp. HTCC2649] Length = 374 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 140/380 (36%), Positives = 202/380 (53%), Gaps = 20/380 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79 MRVV AMSGGVDS+V AA + G++V+GV L L S + CC +D DARRV Sbjct: 1 MRVVAAMSGGVDSAVAAARMLDAGHEVVGVHLALSRSAATLRESARGCCTIEDAGDARRV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + YV+D ERF+ V+ F + Y AG TP PC+ CN ++KF+ LL LG D Sbjct: 61 ADRLGIPFYVWDMAERFQRDVMDDFVAEYQAGRTPNPCLRCNESIKFAALLDRAVALGFD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + V +G R + R +D ++DQSY L +QL FPLGD K Sbjct: 121 AVATGHYAQIVERVDAEGVTHRELHRAVDPKKDQSYVLGVLDDEQLSRAFFPLGDTAKPQ 180 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258 +R+ A G IA K DS DICF+ G + + G+IV +G+++G H G Sbjct: 181 IREEAAARGFSIAKKPDSYDICFIPDGDTRGFLTKKLGE--QPGEIVDAESGEVVGSHEG 238 Query: 259 IINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +T+GQRRGLG+ EP +VV +D ++RV++G ++ L V I W G Sbjct: 239 AYGFTVGQRRGLGLDRSSLDAEPRYVVGVDAPTNRVLIGTQDLLGVDVIVADHARWCG-- 296 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRND---DGVYVDFEKSEVGVASGQACVFYTSD 371 DA V + ++R+ + VP ++ + V+V ++ GVA GQ+ V Y Sbjct: 297 ---DAPVGEVRVGAQVRAHGEEVPALAWVDESDPELVHVRLDERIRGVAPGQSVVLYDD- 352 Query: 372 SNEARVLGGGIISGSKRSDA 391 RV+G I+ + R+ A Sbjct: 353 ---TRVVGSATIAATSRAGA 369 >gi|315077923|gb|EFT49974.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium acnes HL053PA2] Length = 360 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 143/375 (38%), Positives = 198/375 (52%), Gaps = 21/375 (5%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVCDTINV 85 MSGGVDS+V AA L G+DV GV L L N R + CC+ +D +DARR D + + Sbjct: 1 MSGGVDSAVAAARLVEAGHDVTGVHLALSRNPRSHREGSRGCCSLEDSFDARRAADRLGI 60 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145 YV+D+ +RF VI PF + Y AG TP PC+ CN +KF+ LL LG D +ATG Sbjct: 61 PFYVWDFSDRFVAEVIDPFIAEYRAGRTPNPCLRCNERIKFAALLERGLDLGYDAVATGP 120 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y R+++ G + R +D +DQSY L Q QL FPLG+ K +VR A Sbjct: 121 YARTKVVDG-----VTKLYRSVDPGKDQSYVLAVLNQDQLSHSLFPLGNSLKMNVRQEAA 175 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 +GL +ADK DS DICF+ G + + +G+I +G ++G HNG ++TIG Sbjct: 176 ALGLSVADKPDSNDICFIPDGDTPGWLSEKIG--SADGEIRDESGALVGHHNGYHHFTIG 233 Query: 266 QRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 QRRGL + G+P +V+ ++ ++ V+VG E L VH I W V Sbjct: 234 QRRGLRLGVPAPDGKPRYVLDIEPVNNTVVVGGAEGLTVHHIEAIRPVWCS-----SEPV 288 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + + ++R+ DPVP + GV V+ E S GVA GQA VFY D V+G Sbjct: 289 ETWHGQAQVRAHGDPVPAIISAVPGGVAVELEDSLRGVAPGQAAVFYDGD----LVVGSA 344 Query: 382 IISGSKRSDAVEESL 396 I G+ R+ E Sbjct: 345 TICGTDRAGVKAEQA 359 >gi|116328677|ref|YP_798397.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330666|ref|YP_800384.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122281579|sp|Q04TZ4|MNMA_LEPBJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|122283538|sp|Q04ZN1|MNMA_LEPBL RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|116121421|gb|ABJ79464.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116124355|gb|ABJ75626.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 377 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 137/384 (35%), Positives = 215/384 (55%), Gaps = 15/384 (3%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDA 76 +++VAMSGGVDS+V A LL +GY+VIGV L+ + K SCC+ +D+ DA Sbjct: 2 SKGKIIVAMSGGVDSAVTAGLLMEEGYEVIGVNLRTWEYEAPVCDTTKKSCCSPEDIRDA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R V ++ + YV E+ F+ VI F Y G+TP PCV+CN VKF L + L Sbjct: 62 RDVGLSLKIPFYVVKMEKVFQEKVIDRFIDDYQHGKTPNPCVECNTFVKFGALFEKAKAL 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 G D +ATGHY R R + +D+ ++Q+Y+L+ +Q+ L ++ FPLG M Sbjct: 122 GIDKIATGHYARIVRN-----GERYAISNGVDIGKNQAYYLYGLSQENLKNVTFPLGGMT 176 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++AR MGL +ADK++SQ+ICF+ + Y +++ + G +G+I+G+H Sbjct: 177 KPEVREIARRMGLSVADKAESQEICFIPENDYRKFLEKKH-VEFTPGFFKLRDGRIIGKH 235 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G N+TIGQR+GLG+A PL+V+ ++ + VI+G + ++N+ G Sbjct: 236 KGRENFTIGQRKGLGIAWRNPLYVIAIE-DDGSVILGEENETYAESFSVIDVNYQGFAPL 294 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + F+C V++R P+ + + ++ + V+ + GV GQ+ VFY N Sbjct: 295 GEG--ESFECRVQVRYRHTPIRCRITKMNEDLVVNPLEEVRGVTPGQSAVFY--PLNSDY 350 Query: 377 VLGGGII-SGSKRSD-AVEESLLS 398 +L GGII GS R A EES ++ Sbjct: 351 LLLGGIIRKGSIRMQVAKEESAIA 374 >gi|88809139|ref|ZP_01124648.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. WH 7805] gi|88787081|gb|EAR18239.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. WH 7805] Length = 409 Score = 406 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 143/386 (37%), Positives = 201/386 (52%), Gaps = 31/386 (8%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 L P + RV V +SGGVDSS+ AALL G+DV G+TL L + KG+CC + + Sbjct: 41 LRHWPGEHRVAVGLSGGVDSSLTAALLVEAGWDVEGLTLWLMS------GKGACC-AEGL 93 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA +C+ + + H+V D E F+ ++ Y AG TPLPC CNR VKFS +L Sbjct: 94 VDAAGICEQLEIPHHVVDSRETFQREIVNGLIEGYQAGITPLPCSRCNRAVKFSPMLRWA 153 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 ++ G +ATGHY R R DD R + R +D +DQSYFL+ TQ+ L + FPL Sbjct: 154 QEERGLARIATGHYARLRF---DDSSSRWRLLRGLDARKDQSYFLYDLTQEVLDRVVFPL 210 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQ 251 G++ K R A GL A K +SQD+C G + +G+IV +G Sbjct: 211 GELTKPDTRLEAARHGLRTAAKPESQDLCLADHHGSMRAFLDAYLP--PRQGEIVLQDGT 268 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 ++G H+GI ++TIGQR+GLG+A EPL VV LD +RV+V R+ + INW+ Sbjct: 269 VVGEHDGIEHFTIGQRKGLGIAWSEPLHVVRLDAAMNRVVVATRDQAGRDHCVVGAINWV 328 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-----------DGVYVDFEKSEVGVA 360 A K V++R PVP + D +DF++ + + Sbjct: 329 SIAPP--APGQRQKVHVQVRYRSAPVPAQLTTMDAEASDAEAERPHRCRLDFDEPQFSIT 386 Query: 361 SGQACVFYTSDSNEARVLGGGIISGS 386 GQA VFY D+ VLGGG+I + Sbjct: 387 PGQAAVFYDGDA----VLGGGLIQTA 408 >gi|240169595|ref|ZP_04748254.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium kansasii ATCC 12478] Length = 363 Score = 406 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 144/379 (37%), Positives = 198/379 (52%), Gaps = 22/379 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+V+ AMSGGVDSSV AA + G++V+GV L L ++ ++ R GS CC+ +D DARR Sbjct: 1 MKVLAAMSGGVDSSVAAARMVDAGHEVVGVHLAL-STAPSTLRTGSRGCCSKEDASDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ E+F VI F SSYA GETP PCV CN+ +KFS L + LG Sbjct: 60 VADVLGIPFYVWDFAEKFNEDVIDDFVSSYARGETPNPCVRCNQRIKFSALSARALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R DG+ + R +D ++DQSY L T +QL FP+GD K Sbjct: 120 DAVATGHYARLS-----DGR----LRRAVDRDKDQSYVLAVLTARQLRHALFPIGDTPKP 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R A GL +ADK DS DICF+ G + G +V +G +L H+G Sbjct: 171 QIRAEAARRGLAVADKPDSHDICFIPSGDTRAFLGARIG--VRRGLVVDADGAVLATHDG 228 Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 + +TIGQR+GLG+ G P +V +D ++ V VG L+VH + R + Sbjct: 229 VHEFTIGQRKGLGIPGPGPDGRPRYVTAIDAETATVRVGDVSDLDVHALTGRAPVFTAGA 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 A C V++R+ + V + D + V GVA GQ V Y D Sbjct: 289 ----APSGPVDCAVQVRAHGETVAATAELVGDELLVRLHAPLRGVARGQTAVLYRPDPGG 344 Query: 375 ARVLGGGIISGSKRSDAVE 393 VLG I+GS R Sbjct: 345 DEVLGSATIAGSHRRQTAS 363 >gi|296119548|ref|ZP_06838106.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium ammoniagenes DSM 20306] gi|295967431|gb|EFG80698.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium ammoniagenes DSM 20306] Length = 361 Score = 406 bits (1045), Expect = e-111, Method: Composition-based stats. Identities = 146/375 (38%), Positives = 199/375 (53%), Gaps = 24/375 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79 MRV+VAMSGGVDSSV AA G++V+GV L L+ + ++ K CC+ +D DARR+ Sbjct: 1 MRVLVAMSGGVDSSVAAARAVEAGHEVVGVHLALHKDAQQTREKARGCCSLEDSADARRI 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + + YV+D+ E F+ AVI F SYA GETP PC+ CN +KF+ LL LG D Sbjct: 61 CDKLGIPFYVWDFSEEFKEAVITDFVDSYARGETPNPCLRCNEKIKFAALLRKGMALGFD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + DG M R +D +DQSY L T ++L FP+GD K Sbjct: 121 AVATGHYAT----LDKDG----YMRRSLDENKDQSYVLGVITAEELSYCYFPIGDTPKPQ 172 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R+ A+ G A K DS DICF+ G + G IV +G L H+G Sbjct: 173 IREEAKRHGFSTASKPDSYDICFIPDGNTQAFLGARIG--MRPGMIVDQDGTELREHDGA 230 Query: 260 INYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 NYTIGQR+GL + A G P +V +D + V VG RE+L+V RI + +L Sbjct: 231 WNYTIGQRKGLDIKAPAADGRPRYVTGIDAQTGTVTVGSREALKVTRISADRLKYLH--- 287 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVF--VQRNDDGVYVDFEKSEVGVASGQACVFY--TSD 371 A+ F C V++R+ V V R+ D + + + GVA GQA V Y + D Sbjct: 288 --PAMDGEFDCDVQVRAHGSVVSCHAEVDRDADAMILTLNEPLSGVAPGQAAVLYFPSPD 345 Query: 372 SNEARVLGGGIISGS 386 V+G G I + Sbjct: 346 ELGDIVIGSGTIIET 360 >gi|325283230|ref|YP_004255771.1| tRNA-specific 2-thiouridylase mnmA [Deinococcus proteolyticus MRP] gi|324315039|gb|ADY26154.1| tRNA-specific 2-thiouridylase mnmA [Deinococcus proteolyticus MRP] Length = 422 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 138/381 (36%), Positives = 203/381 (53%), Gaps = 19/381 (4%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 T S RV+ AMSGGVDSSV AALLK GY V+G ++ + K ++ S Sbjct: 46 TAPTSPSPSSTAAGTRVLCAMSGGVDSSVTAALLKDQGYSVVGAMMRFWPDDKRTETFDS 105 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 CC+ Y+ARRV + + V Y+ DY E+F+ ++ PF YA G TP PCV+CN VKF Sbjct: 106 CCSPDAAYEARRVAEQVGVPFYLLDYREQFQQHIVGPFIEEYAKGRTPNPCVNCNTKVKF 165 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 +L+ + LG +ATGHY++ V + G+ R D +DQ+YFL+ T ++ L Sbjct: 166 DELVKKAKMLGCQYVATGHYVKR--VVNERGEVEFW--RGDDPRKDQTYFLWGTPREALP 221 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 + FP+G+++K VR++A E GL A K +SQ+ICFV GK D V + +G I Sbjct: 222 YILFPVGELEKPRVREIAAERGLLTASKPESQNICFVP-GKVQDFVAEHLPQV--QGHIR 278 Query: 247 HL-NGQILGRHNGIINYTIGQRRGLGVAMGEP-LFVVYLDKNSSRVIVGPRESLEVHRIY 304 + G+I+G H G YT+GQ++GLG+ VV+LD + V VG E + Sbjct: 279 EIRTGEIVGEHLGTQFYTLGQKKGLGLYQTHRVRHVVHLDPATQTVWVGDYEDCLWDDLS 338 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQ 363 + N+L D + V++R PV V ++ G + F++ + VA GQ Sbjct: 339 ASQANYLV-----DLAELPQRLQVQVRYRTAPVGATVLHADEHGFRLRFDEPQFAVAPGQ 393 Query: 364 ACVFYTSDSNEARVLGGGIIS 384 + V Y R+LGGG+I Sbjct: 394 SAVLYDG----PRLLGGGLID 410 >gi|189460624|ref|ZP_03009409.1| hypothetical protein BACCOP_01265 [Bacteroides coprocola DSM 17136] gi|189432583|gb|EDV01568.1| hypothetical protein BACCOP_01265 [Bacteroides coprocola DSM 17136] Length = 374 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 120/371 (32%), Positives = 185/371 (49%), Gaps = 20/371 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ R++V MSGG+DSS +L+ GY+V+GVT++ ++ + ++ +A+ Sbjct: 3 KEKRILVGMSGGIDSSATCIMLQEQGYEVVGVTMRTWDIP-SHFSTPEQEQPDEILEAKA 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + H+V D E FRN ++ F Y G TP PCV CN K L + G Sbjct: 62 LAERLGIEHHVADVREEFRNVIVQYFIDEYMKGRTPNPCVMCNPLFKERILCEWADRTGC 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R +D K R + D +DQSYFL+ Q+ L + FPLG M K Sbjct: 122 AQIATGHYCRL-----EDRKEHRYIVTGDDPTKDQSYFLWKLPQEILKRMVFPLGGMTKT 176 Query: 199 SVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILG 254 VR E G + A +S ++CF+ Y D ++ I G V G LG Sbjct: 177 EVRAYLAEKGFEAKAKGGESMEVCFI-DKDYRDFLREHCPDIDERIGTGWFVDSKGLKLG 235 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +H G YTIGQR+GL +A+G P +V+ ++ + V++G E L+ + + +IN + Sbjct: 236 QHKGFAYYTIGQRKGLEIALGRPAYVLKINPAKNTVMLGDAEQLKAEYMLVEDINVIDLQ 295 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + V+IR P+P V D+G + V F+ + GQ+ VFY Sbjct: 296 ELLECP----DLSVRIRYRSRPIPCQVILLDEGHLLVKFKAEASAITPGQSAVFYD---- 347 Query: 374 EARVLGGGIIS 384 + RVLGGG I+ Sbjct: 348 KGRVLGGGFIA 358 >gi|114566016|ref|YP_753170.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|122318873|sp|Q0AZQ5|MNMA_SYNWW RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|114336951|gb|ABI67799.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 338 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 131/364 (35%), Positives = 202/364 (55%), Gaps = 28/364 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+V V MSGG+DS+V A LL+ GY+V G+T+ ++ R+A ++ A R+ Sbjct: 1 MKVAVLMSGGIDSTVSALLLREQGYEVTGLTM-VHLEREAGEK------------AARIA 47 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + H V D E F++AV+ F Y G TP PCV CN +KF LL LGAD Sbjct: 48 NELQIEHKVVDLREPFQSAVVDYFCREYEQGHTPNPCVKCNEEIKFGLLLKAALDLGADK 107 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +A+GHY R DD + + + +D +DQSYFL+ QQQL L FPLG +KE V Sbjct: 108 VASGHYARIDY---DDKSQCYRLMKGVDPRKDQSYFLYRLKQQQLSRLIFPLGGYRKEEV 164 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++AR L +A++ +SQ++CF+ G Y + ++ + EG + G+ILGRH GI Sbjct: 165 REMARRYHLQLAEEKESQEVCFIP-GDYREFIRPHVSY--KEGSFLDRTGKILGRHRGIP 221 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQRRGL V+ G PL+V+ +D +++++G E L + ++ +++ FE + Sbjct: 222 FYTIGQRRGLAVSAGRPLYVLKIDPEKNQILLGENEVLFSKLLRFKQNHFICSQDFELLI 281 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 K KIR + + +D + + F++++ GQ+ V+Y D VLG Sbjct: 282 ----KVKAKIRYAARESEAILHCIEDDIWELVFDEAQRAATPGQSVVYYQGD----YVLG 333 Query: 380 GGII 383 GG I Sbjct: 334 GGTI 337 >gi|205822510|sp|Q5FR73|MNMA_GLUOX RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 361 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 180/374 (48%), Positives = 245/374 (65%), Gaps = 25/374 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR++VAMSGGVDSSVVAALLKR G++VIG TLQLY+ +A + G+CCAG+D+ DAR V Sbjct: 1 MRILVAMSGGVDSSVVAALLKRQGHEVIGATLQLYDHGQA-AKPGACCAGRDIMDARAVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + HYV D E RFR++V+ FA +YA GETP+PCV CN+ VKF+DLL + R LG + Sbjct: 60 DRLGFPHYVIDAESRFRDSVVESFADAYARGETPVPCVACNQGVKFTDLLGMARDLGCEA 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199 +ATGHY+R +G M RP+D ERDQ++FLFATT+ QL LRFPLG+M K Sbjct: 120 MATGHYVRRV-----EGPEGAEMHRPVDAERDQTWFLFATTKDQLDYLRFPLGEMPDKAH 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR LA+E+GL+IA K DSQDICFV G Y ++V+++ + EG+IV +G++LGRH G+ Sbjct: 175 VRALAQELGLEIAAKPDSQDICFVPSGSYAELVEKLRPEVRGEGEIVDEDGRVLGRHEGV 234 Query: 260 INYTIGQRRGLG---VAMGEPLFVVYLDKNSSRVIVGPR----ESLEVHRIYLREINWLG 312 YT+GQ + LG A GE V +D R++VGPR E+ + LR++NWL Sbjct: 235 ARYTVGQSKRLGDIHTATGERQMVTRIDVPKRRIVVGPRVQVSEADSRRSVRLRDMNWL- 293 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSD 371 DA +G +C V+IR+ + V+ ++ G V+ ++ + A GQACV Y Sbjct: 294 ----IDAPAEGVRCGVQIRAREKLREALVKPLENGGALVELTEAAM-PAPGQACVLYDG- 347 Query: 372 SNEARVLGGGIISG 385 +RVLGGG I+ Sbjct: 348 ---SRVLGGGFITA 358 >gi|73969262|ref|XP_538325.2| PREDICTED: similar to tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1 isoform a [Canis familiaris] Length = 425 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 122/388 (31%), Positives = 183/388 (47%), Gaps = 36/388 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV A+SGGVDS+V A LL+R GY V GV ++ ++S G C A +D DA RVC Sbjct: 6 HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEH---GVCTADRDCEDAYRVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140 +++ + Y + + N V F S Y G TP P + CN+ +KFS LGAD Sbjct: 63 ILDIPFHQVSYVKEYWNDVFSDFLSEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122 Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQ 182 +ATGHY R+ L + +++ I + + D +DQ++FL +Q Sbjct: 123 VATGHYARTSLEDEEVFQQKHIRRPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQ 182 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 L FPLG + K+ V+ +A E L + K +S ICFV + + + + + Sbjct: 183 DALRRTLFPLGGLTKDFVKKIAAENRLHHVLQKKESMGICFVGKRNFENFILQYLQ--PR 240 Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RES 297 G + + + ++LG H G YT+GQR +G + EP +VV D V V P + Sbjct: 241 PGKFISIEDNKVLGTHKGWFLYTLGQRAKIG-GLREPWYVVEKDGTKGDVFVAPRTDHPA 299 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355 L + ++W+ + V D +C + R VP + N DG V+V K+ Sbjct: 300 LYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVKA 359 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383 +A GQ VFY D LG G I Sbjct: 360 VRALALGQFAVFYKGD----ECLGSGKI 383 >gi|167825759|ref|ZP_02457230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 9] Length = 352 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 110/326 (33%), Positives = 155/326 (47%), Gaps = 22/326 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D I + Sbjct: 1 MSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVADLIGID 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 ++ +++ V F Y+AG TP P V CN +KF L LGA +ATGHY Sbjct: 58 VEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTIATGHY 117 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 R R G R + + D +DQSYFL Q QL FPLG++ K VR++A + Sbjct: 118 ARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVREIAAQ 172 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 +GL A K DS ICF+ + + D + R G + +G+ +G H G+ YT GQ Sbjct: 173 IGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAFYTFGQ 230 Query: 267 RRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFED 318 R+G+G+ GEP FV D S+ + V L + ++W+ + Sbjct: 231 RKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG----E 286 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRN 344 DG +C K R Q P V+ Sbjct: 287 PPADGARCGAKTRYRQADAPCVVRPG 312 >gi|169832175|ref|YP_001718157.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Desulforudis audaxviator MP104C] gi|205816638|sp|B1I677|MNMA_DESAP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|169639019|gb|ACA60525.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Desulforudis audaxviator MP104C] Length = 343 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 134/367 (36%), Positives = 189/367 (51%), Gaps = 28/367 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V VA+SGGVDSS A L+K G+ V +T+ + + +A RV Sbjct: 4 VAVALSGGVDSSTTALLMKEAGHRVFTLTMATND--------------RVAAEAARVSAF 49 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + H+V D F VI PF ++Y G TP PC+ CNR +K+ L + GAD A Sbjct: 50 LGLPHHVLDISGLFEQRVIGPFCAAYLEGRTPNPCIACNRDLKYGTLFRQAVEWGADYFA 109 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R R + R ++ R D +DQSY LF Q++L L PLGD+ KE+VR+ Sbjct: 110 TGHYARVRF---EPEPGRYVLLRARDPRKDQSYVLFYLDQERLARLLLPLGDLTKETVRE 166 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 AR G+ ++SQ+ICFV Y ++R EG V G +LGRH GI Y Sbjct: 167 KARAAGIP-FTAAESQEICFVAGDDYRTFIRRRCGQAVAEGPFVDRQGNVLGRHRGIPFY 225 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQRRGLG+A+G P+FV+ ++ + VIVGP E L +++++ +++ Sbjct: 226 TIGQRRGLGLALGRPVFVLGFNRERNAVIVGPEEELWHTAFLAVDVHYILPQPAGGTLIE 285 Query: 323 GFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 +IR P + D V FEK + + GQA VFY + RV+GGG Sbjct: 286 -----AQIRYRAKAAPARLYPQPPDAARVVFEKPQRAITPGQAAVFYQGE----RVVGGG 336 Query: 382 IISGSKR 388 IIS + R Sbjct: 337 IISCAVR 343 >gi|258543643|ref|YP_003189076.1| tRNA-specific 2-thiouridylase MnmA [Acetobacter pasteurianus IFO 3283-01] gi|256634721|dbj|BAI00697.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Acetobacter pasteurianus IFO 3283-01] gi|256637777|dbj|BAI03746.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Acetobacter pasteurianus IFO 3283-03] gi|256640831|dbj|BAI06793.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Acetobacter pasteurianus IFO 3283-07] gi|256643886|dbj|BAI09841.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Acetobacter pasteurianus IFO 3283-22] gi|256646941|dbj|BAI12889.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Acetobacter pasteurianus IFO 3283-26] gi|256649994|dbj|BAI15935.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Acetobacter pasteurianus IFO 3283-32] gi|256652984|dbj|BAI18918.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656038|dbj|BAI21965.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Acetobacter pasteurianus IFO 3283-12] Length = 360 Score = 405 bits (1041), Expect = e-111, Method: Composition-based stats. Identities = 180/367 (49%), Positives = 242/367 (65%), Gaps = 20/367 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR++VAMSGGVDSSVVAA L +G++V+G TLQLY+SR A +KG+CCAGQD+ DAR V Sbjct: 1 MRILVAMSGGVDSSVVAARLLEEGHEVVGATLQLYDSRGA-AKKGACCAGQDIRDARAVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + HYV D E RF+++VI FA +YA+GETP+PCV CN+ VKF+DLL + R++GAD Sbjct: 60 DLLGFPHYVIDAERRFKDSVIERFADAYASGETPVPCVACNQGVKFTDLLGLAREIGADA 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199 +ATGHY+R +G + RP D +RDQS+FLFATT+ QL LRFPLGDM K + Sbjct: 120 MATGHYVRRV-----EGPDGAELHRPCDEDRDQSWFLFATTRDQLEFLRFPLGDMPDKAA 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A GL +A K DSQD+CFV G Y D+V++++ +A G+IV GQI+G+H G+ Sbjct: 175 VRKEAERFGLVVAGKPDSQDLCFVSDGSYVDLVEKMHPEMAGPGEIVDQQGQIVGQHEGV 234 Query: 260 INYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 + +T+GQ + LG A GE VV ++ RVI+GPRE V + +R++NWL Sbjct: 235 MRFTVGQSKRLGNAARLNGERQMVVGVEPGRRRVIIGPREKSFVTALSVRDVNWLV---- 290 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 DA +G C V++R+ ++P V DG V E+ + A GQACVFY R Sbjct: 291 -DAPPEGLVCRVQMRAREEPRAARVVPTPDGAMVYLEEPAM-PAPGQACVFYQG----TR 344 Query: 377 VLGGGII 383 +LGGG I Sbjct: 345 ILGGGFI 351 >gi|57238956|ref|YP_180092.1| tRNA-specific 2-thiouridylase MnmA [Ehrlichia ruminantium str. Welgevonden] gi|58578889|ref|YP_197101.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ehrlichia ruminantium str. Welgevonden] gi|81557340|sp|Q5HBV2|MNMA_EHRRW RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|57161035|emb|CAH57941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ehrlichia ruminantium str. Welgevonden] gi|58417515|emb|CAI26719.1| Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ehrlichia ruminantium str. Welgevonden] Length = 370 Score = 404 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 168/377 (44%), Positives = 233/377 (61%), Gaps = 14/377 (3%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +++ L +K P VVAMSGGVDSSV AALL + GY VIG+TLQLYN+ S KG+C Sbjct: 6 KIDLLVKNKPPTSTTAVVAMSGGVDSSVAAALLHKLGYKVIGITLQLYNNNNNSNTKGAC 65 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 C D DA++V ++ HY +YE+ FR VI F +Y G+TP+PC+ CN+ +KF Sbjct: 66 CGSLDTQDAKQVASSMGFPHYTLNYEKVFREEVIEDFIDTYTQGKTPIPCIKCNQVIKFR 125 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL+ T+ LGADVL TGHYIR D + D ++DQSYFLFATT +QL Sbjct: 126 DLLNATKSLGADVLVTGHYIRKIEQDDD-----IYVYSSKDTKKDQSYFLFATTVEQLRL 180 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 LRFPLG+ KE +R LA+ L +A+K DSQ+ICFV Y + + +G+I+ Sbjct: 181 LRFPLGNFHKEDIRKLAKYFNLQVANKPDSQNICFVTDT-YKKTIAELRPHTIKKGNIID 239 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 +NG IL +HNGI+N+TIGQR+G+G++ PL+V+ L+ +++ V VGP+ +L +++Y+RE Sbjct: 240 INGNILSQHNGIVNFTIGQRKGIGISSKAPLYVIKLNPDTNEVTVGPKSALLQNKLYIRE 299 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366 INWL E +G VK+RSS P + N++ + + S V GQACV Sbjct: 300 INWLA---KEKIPHNGLNVKVKLRSSHSGSPATIFPNNNNTATILLQDSYCTVTPGQACV 356 Query: 367 FYTSDSNEARVLGGGII 383 Y D R+LGGG I Sbjct: 357 IYDHD----RMLGGGWI 369 >gi|168038711|ref|XP_001771843.1| predicted protein [Physcomitrella patens subsp. patens] gi|162676794|gb|EDQ63272.1| predicted protein [Physcomitrella patens subsp. patens] Length = 421 Score = 404 bits (1040), Expect = e-110, Method: Composition-based stats. Identities = 124/370 (33%), Positives = 175/370 (47%), Gaps = 19/370 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V V +SGGVDSS+ A LL+R GY+V GV ++ +++R G C A QD DA+RVC+ Sbjct: 40 VAVGISGGVDSSIAALLLQRQGYEVFGVYMRNWDARDE-AGGGHCSADQDYEDAQRVCEH 98 Query: 83 I-NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + DY++++ V F +A G TP P +DCN+ +KF LL Q+GAD Sbjct: 99 LAGIKLHHLDYQKKYWTQVFENFTQKFAMGLTPNPDLDCNQHIKFDALLENALQMGADKF 158 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + R +D ++DQSYFL + + FPLG + K VR Sbjct: 159 ATGHYARLSR---PQCGGPVQLLRGIDEDKDQSYFLASVGSAAFERVLFPLGGLTKAQVR 215 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI-LGRHNGII 260 DLA GL A K S ICFV + K+ D + G V ++G LG H GI Sbjct: 216 DLALSEGLVTATKRSSAGICFVGRRKFRDFISEYVE--MEPGPFVCVDGNTHLGLHTGIA 273 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGDGLFE 317 YT GQR G+ + +P +VV D ++ V V +L + W+ + Sbjct: 274 AYTHGQRAGIS-GVPKPFYVVGKDVQNNVVYVAMGADHPALFCTSAVAGDPFWISGSPPK 332 Query: 318 D-AVVDGFKCFVKIRSSQDPVPVFVQRND--DGVYVDFEKSEVGVASGQACVFYTSDSNE 374 C K R Q V D + V + FE+ + GQA V Y D Sbjct: 333 QLQDGQPLTCMFKARYRQSLERCTVCFLDSKNEVAIRFEEPTRAITPGQALVLYDGDV-- 390 Query: 375 ARVLGGGIIS 384 LG +I+ Sbjct: 391 --CLGASVIA 398 >gi|329113810|ref|ZP_08242581.1| tRNA-specific 2-thiouridylase MnmA [Acetobacter pomorum DM001] gi|326696820|gb|EGE48490.1| tRNA-specific 2-thiouridylase MnmA [Acetobacter pomorum DM001] Length = 360 Score = 404 bits (1039), Expect = e-110, Method: Composition-based stats. Identities = 179/367 (48%), Positives = 241/367 (65%), Gaps = 20/367 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR++VAMSGGVDSSVVAA L +G++V+G TLQLY+SR A +KG+CCAGQD+ DAR V Sbjct: 1 MRILVAMSGGVDSSVVAARLLEEGHEVVGATLQLYDSRGA-AKKGACCAGQDIRDARAVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + HYV D E RF+++VI FA +YA+GETP+PCV CN+ VKF+DLL + R++GAD Sbjct: 60 DLLGFPHYVIDAERRFKDSVIERFADAYASGETPVPCVACNQGVKFTDLLGLAREIGADA 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199 +ATGHY+R +G + RP D +RDQS+FLFATT+ QL LRFPLGDM K + Sbjct: 120 MATGHYVRRV-----EGPEGAELHRPCDEDRDQSWFLFATTRDQLEFLRFPLGDMPDKAA 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A GL +A K DSQD+CFV G Y D+V++++ +A G+IV GQI+G+H G+ Sbjct: 175 VRKEAERFGLVVAGKPDSQDLCFVSDGSYVDLVEKMHPEMAGPGEIVDQQGQIVGQHEGV 234 Query: 260 INYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 + +T+GQ + LG A GE VV ++ RVI+GPRE V + +R +NWL Sbjct: 235 MRFTVGQSKRLGNAARLNGERQMVVGVEPGRRRVIIGPREKSFVTALSVRNVNWLV---- 290 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 DA +G C V++R+ ++P V +G V E+ + A GQACVFY R Sbjct: 291 -DAPPEGLFCRVQMRAREEPRAARVVPTPEGAMVYLEEPAM-PAPGQACVFYQG----TR 344 Query: 377 VLGGGII 383 +LGGG I Sbjct: 345 ILGGGFI 351 >gi|205814900|sp|Q6MLR7|MNMA_BDEBA RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 360 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 143/372 (38%), Positives = 198/372 (53%), Gaps = 20/372 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDA 76 RV+VAMSGGVDSS AALL GY+VIG T+Q+++ + G+CC+ DV DA Sbjct: 2 SKGRVLVAMSGGVDSSAAAALLVEQGYEVIGATMQVWDYSTCDIEEGNGTCCSSIDVDDA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R V D + + YV + E +FR AVI PF +Y G+TPLPCV+CN +KF L+ R+L Sbjct: 62 RAVADRLGIPFYVINCEAKFRAAVIDPFLKAYLEGQTPLPCVNCNTYLKFDHLVKKMREL 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 D +ATGHY + D K + + D +DQ+YFLF + + L FP+GDMK Sbjct: 122 ECDYIATGHYAKIVY----DDKGKASIHTSTDDWKDQTYFLFTIDPELVPKLLFPVGDMK 177 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA---GIALEGDIVH-LNGQI 252 K VR+ + GL A K DSQ ICFV Y + +K + +G I GQ+ Sbjct: 178 KPQVREYSESRGLVTARKKDSQGICFVGNQGYQNFIKDHVKSEILASKKGLIKRFPEGQV 237 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 + H GI NYT GQ +GLG+ E LFV+ +D + + V VG + L + + + Sbjct: 238 MASHEGIHNYTYGQSKGLGMDYHEKLFVIKIDASDNTVWVGEEKHLFANEVD------VV 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 D D + DG VKIR P V + G + F + + V GQA VFY Sbjct: 292 DPKLLDEIQDGEIMNVKIRYQHKGAPAQVIKTASGFKLKFTEPQRAVTPGQAAVFYRD-- 349 Query: 373 NEARVLGGGIIS 384 +++GGG I+ Sbjct: 350 --RQLVGGGWIT 359 >gi|167837825|ref|ZP_02464708.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia thailandensis MSMB43] Length = 311 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 109/321 (33%), Positives = 153/321 (47%), Gaps = 22/321 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D I + Sbjct: 1 MSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVADLIGID 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 ++ +++ V F Y+AG TP P V CN +KF L LGA +ATGHY Sbjct: 58 VEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTIATGHY 117 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 R R G R + + D +DQSYFL Q QL FPLG++ K VR++A + Sbjct: 118 ARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTKVREIAAQ 172 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 +GL A K DS ICF+ + + D + R G + +G+ +G H G+ YT GQ Sbjct: 173 IGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAFYTFGQ 230 Query: 267 RRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFED 318 R+G+G+ GEP FV D S+ + V L + ++W+ + Sbjct: 231 RKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG----E 286 Query: 319 AVVDGFKCFVKIRSSQDPVPV 339 DG +C K R Q P Sbjct: 287 PPADGARCGAKTRYRQADAPC 307 >gi|288818711|ref|YP_003433059.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Hydrogenobacter thermophilus TK-6] gi|288788111|dbj|BAI69858.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Hydrogenobacter thermophilus TK-6] gi|308752298|gb|ADO45781.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Hydrogenobacter thermophilus TK-6] Length = 354 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 153/368 (41%), Positives = 209/368 (56%), Gaps = 20/368 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYDARR 78 MRV V MSGGVDSSV A LLK G++VIGVTL+ + ++ + CC+ +DV DA + Sbjct: 1 MRVAVGMSGGVDSSVSALLLKMAGHEVIGVTLRFHTIPESCSTDDLRVCCSPEDVKDAAK 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-G 137 V + + + H FD+E F+ VI F YA G+TP PC CNR VK L R++ Sbjct: 61 VSEKLGIPHITFDWERIFKERVIDYFVQEYAEGKTPNPCAICNRDVKTGFLARYLREVAQ 120 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D LATGHY R Y K +R++ R D +DQSYFL ++ L L FPLGD+ K Sbjct: 121 VDRLATGHYARLVEY-----KGKRLIARAKDKSKDQSYFLALVRKKDLELLEFPLGDLTK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 E VR +A E L +A K DSQ++CF+ K + +K + G I H++G++LG H Sbjct: 176 EQVRRIAVEYSLPVAQKRDSQEVCFLMGKKPGEFIKERVGEAS--GYIKHVSGRVLGTHT 233 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 GI N+TIGQRRGLGV+ EPL+VV +D ++ VIVG E + + L++IN+ L Sbjct: 234 GIYNFTIGQRRGLGVSYHEPLYVVDIDAQTNTVIVGSEELIYKSSLKLKDINFH---LHI 290 Query: 318 DAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 D G + +R V V ++ DG V+FE G+ GQ C FY D Sbjct: 291 DKW--GKDVYAVVRYRTQAVKVKDIKETKDGFVVEFETPVRGITPGQVCAFYEGDV---- 344 Query: 377 VLGGGIIS 384 +LGGGII+ Sbjct: 345 LLGGGIIA 352 >gi|209364581|ref|NP_001125570.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Pongo abelii] Length = 421 Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats. Identities = 118/388 (30%), Positives = 182/388 (46%), Gaps = 36/388 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV A+SGGVDS+V A LL+R GY V GV ++ ++S G C A +D DA RVC Sbjct: 6 HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEH---GVCTADKDCEDAYRVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140 +++ + Y + + N V F + Y G TP P + CN+ +KFS LGAD Sbjct: 63 ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122 Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQ 182 +ATGHY R+ L + +++ I + + D + Q++FL +Q Sbjct: 123 IATGHYARTSLEDEEVFEQKHIKKPEGLFRNRFEVRNAVKLLQAADSFKGQTFFLSQVSQ 182 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 L FPLG + KE V+ +A E L + K +S +CF+ + + + + Sbjct: 183 DALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQ--PR 240 Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RES 297 G + + + ++LG H G YT+GQR +G + EP +VV D V V P + Sbjct: 241 PGHFISIEDNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVAPRTDHPA 299 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355 L + ++W+ + V D +C + R VP + N DG V+V ++ Sbjct: 300 LYRDLLRTSRVHWIAEEPPAVLVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVQA 359 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383 +A+GQ VFY D LG G I Sbjct: 360 VRALATGQFAVFYKGD----ECLGSGKI 383 >gi|167740138|ref|ZP_02412912.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei 14] Length = 311 Score = 403 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 109/321 (33%), Positives = 153/321 (47%), Gaps = 22/321 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D I + Sbjct: 1 MSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVADLIGID 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 ++ +++ V F Y+AG TP P V CN +KF L LGA +ATGHY Sbjct: 58 VEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTIATGHY 117 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 R R G R + + D +DQSYFL Q QL FPLG++ K VR++A + Sbjct: 118 ARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVREIAAQ 172 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 +GL A K DS ICF+ + + D + R G + +G+ +G H G+ YT GQ Sbjct: 173 IGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAFYTFGQ 230 Query: 267 RRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFED 318 R+G+G+ GEP FV D S+ + V L + ++W+ + Sbjct: 231 RKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG----E 286 Query: 319 AVVDGFKCFVKIRSSQDPVPV 339 DG +C K R Q P Sbjct: 287 PPADGARCGAKTRYRQADAPC 307 >gi|321458097|gb|EFX69171.1| hypothetical protein DAPPUDRAFT_202999 [Daphnia pulex] Length = 409 Score = 403 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 109/395 (27%), Positives = 183/395 (46%), Gaps = 21/395 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVV +SGGVDSSV A LLK+ GYDV+GV ++ ++ G C + +DV A+R C Sbjct: 9 RVVCGVSGGVDSSVAALLLKKKGYDVVGVFMKNWD---GKDELGVCQSDKDVEVAQRTCK 65 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 +N+ + ++ + + N V Y AG TP P + CN +KF ++ L AD Sbjct: 66 ILNIPFFEVNFVKEYWNHVFENLLQDYQAGLTPNPDILCNYHIKFDLFFDYAKEKLDADF 125 Query: 141 LATGHYIRSRLYVG--DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY RS L + + + D +DQ++FL Q L FP+G + K Sbjct: 126 VATGHYARSSLGINSVETETENTKLLTSRDDFKDQTFFLSHIKQSSLKKTLFPIGGLLKS 185 Query: 199 SVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRH 256 VR LA + GL ++++ +S ICF+ + + + + G + ++ + +G+H Sbjct: 186 EVRKLASDNGLEHVSNRQNSTGICFIGRRNFQEFISEYVPN--NPGPFIDVDTDEEVGQH 243 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD 313 GI +T+GQR +G + +P FV + + V +L +W+ Sbjct: 244 LGIHMWTLGQRCRIGGCL-KPYFVASKQPETRTIFVASGTNHPALFSKAFLSSTPHWIHS 302 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 E F CF + + ++ + + G+ V ++ + GQ VFY+ Sbjct: 303 TPRELQENKTFDCFFRFQHTKPLTAAQIAVHQSGLIVTLDRPTRALTPGQYAVFYSG--- 359 Query: 374 EARVLGGGIISGSKRSD---AVEESLLSVIGDEFP 405 LG I + +D + E+ +S + D FP Sbjct: 360 -QECLGCARIVQNLNNDWHNCMTETSISSMYDRFP 393 >gi|68171265|ref|ZP_00544667.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ehrlichia chaffeensis str. Sapulpa] gi|88657652|ref|YP_507667.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ehrlichia chaffeensis str. Arkansas] gi|123492948|sp|Q2GFW6|MNMA_EHRCR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|67999312|gb|EAM85959.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ehrlichia chaffeensis str. Sapulpa] gi|88599109|gb|ABD44578.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ehrlichia chaffeensis str. Arkansas] Length = 367 Score = 403 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 162/377 (42%), Positives = 231/377 (61%), Gaps = 17/377 (4%) Query: 8 RLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSC 67 +++ L +K+P VVAMSGGVDSSV AALL + GY VIG+TLQLYN + KG+C Sbjct: 6 KIDPLVKNKSPSATTAVVAMSGGVDSSVAAALLHKLGYKVIGITLQLYN---NTTGKGAC 62 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 C D DA++V + HY +YE+ F+ VI F +Y G+TP+PC+ CN+ VKF Sbjct: 63 CGSLDTQDAKQVASIMGFPHYTLNYEKVFKEEVIDDFIDTYMQGKTPIPCIKCNQVVKFR 122 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 DLL+ T+ L AD+L TGHYIR D + D ++DQSYFLFATT +QL Sbjct: 123 DLLNATKSLDADILVTGHYIRKIEQDDD-----IYVYSSKDTKKDQSYFLFATTIEQLKF 177 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 LRFPLG+ K+++R LA L IA+K DSQ+ICFV Y + + ++ +G+I+ Sbjct: 178 LRFPLGNFHKDNIRKLAEHFNLPIANKPDSQNICFVADT-YKNTIAQLRPNAIKKGNIID 236 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 +G ILG+H+GI+N+TIGQRRG+G++ EPL+V+ L+ +++ V VG + +L +++++ + Sbjct: 237 TSGNILGQHDGIVNFTIGQRRGIGLSSKEPLYVIKLNPDTNEVTVGHKSALLQNKLHIEK 296 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366 INWL + + G VK+RSS V ND + V + + V GQACV Sbjct: 297 INWL---VKDKIPHTGLNVKVKLRSSHSGSTAIVYPNDNNKATVLLQDTYCTVTPGQACV 353 Query: 367 FYTSDSNEARVLGGGII 383 Y D R+LGGG I Sbjct: 354 IYDGD----RMLGGGWI 366 >gi|41409155|ref|NP_961991.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium avium subsp. paratuberculosis K-10] gi|81571098|sp|Q73VF7|MNMA_MYCPA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|41397975|gb|AAS05605.1| hypothetical protein MAP_3057c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 358 Score = 403 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 139/374 (37%), Positives = 199/374 (53%), Gaps = 22/374 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDSSV AA + G+DV+GV L L ++ + R GS CC+ +D DARR Sbjct: 1 MRVLAAMSGGVDSSVAAARMVDAGHDVVGVHLAL-STAPGTLRTGSRGCCSKEDASDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ E+F+ VI F S+YA GETP PCV CN+ +KFS L + LG Sbjct: 60 VADVLGIPFYVWDFAEKFQADVIDEFLSAYARGETPNPCVTCNQKIKFSALSAKAVALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R + R +D ++DQSY L + +QL FP+GD K Sbjct: 120 DAVATGHYARLS---------GGRLRRAVDKDKDQSYVLAVLSAEQLRHAAFPIGDTPKP 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R+ A GL +A+K DS DICF+ G + G +V +G +L H+G Sbjct: 171 QIREEAARRGLAVAEKPDSHDICFIPSGNTRAFLGERIG--VRRGAVVDADGTVLAEHDG 228 Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 + +TIGQR+GLG+A G P +V +D +++ V VG L+V + R + + Sbjct: 229 VHGFTIGQRKGLGIAGPGPDGRPRYVTAIDADTATVRVGEASDLDVREMLGRAVVFTSGT 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 A F+C V++R+ + + D + V GVA GQ Y D + Sbjct: 289 ----APSGPFECAVQVRAHGETADAVAELVGDELVVRLRAPLRGVAPGQTLALYRRDPDG 344 Query: 375 ARVLGGGIISGSKR 388 VLG I+G+ R Sbjct: 345 DEVLGSATIAGTSR 358 >gi|325299223|ref|YP_004259140.1| tRNA-specific 2-thiouridylase mnmA [Bacteroides salanitronis DSM 18170] gi|324318776|gb|ADY36667.1| tRNA-specific 2-thiouridylase mnmA [Bacteroides salanitronis DSM 18170] Length = 379 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 116/375 (30%), Positives = 179/375 (47%), Gaps = 21/375 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD RV+V MSGG+DSS +L+ GY+V+GVT++ ++ G ++ +A+ Sbjct: 3 KDKRVLVGMSGGIDSSATCIMLQEQGYEVVGVTMRTWDIPSHFSTPGQ-EQPDEILEAQA 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + + H+V D E FR ++ F Y G TP PCV CN K L + G Sbjct: 62 VAARLGIEHHVADVREEFRKVIVQYFIDEYMRGRTPNPCVLCNPLFKERILCEWADRTGC 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY + G + D +DQSYFL+ Q+ L + FPLG M K+ Sbjct: 122 QWIATGHYCQIEKRNG-----WFYIVTGDDATKDQSYFLWKLPQEILSRMLFPLGGMTKD 176 Query: 199 SVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILG 254 VR+ G + A +S +ICF+ Y + ++ I G V G LG Sbjct: 177 KVREYLAHKGFEAKAKGGESMEICFI-DKDYREFLREHCPDIDERIGPGWFVDSKGVKLG 235 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +H G YTIGQR+GLG+A+GEP +V+ ++ + V++G + L + Sbjct: 236 QHKGFAYYTIGQRKGLGIALGEPAYVLKINPEKNTVMLGDADQLRTEYMLAEPPV----A 291 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDS 372 + ++ V+IR P+P V+ ++G + V F + GQ+ VFY + Sbjct: 292 PDIEELLACPNLSVRIRYRSRPIPCQVVRLPENGYLLVRFAVEASAITPGQSAVFYDGN- 350 Query: 373 NEARVLGGGIISGSK 387 RVLGG I+ + Sbjct: 351 ---RVLGGSFIASQQ 362 >gi|120403098|ref|YP_952927.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium vanbaalenii PYR-1] gi|166235070|sp|A1T6X1|MNMA_MYCVP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|119955916|gb|ABM12921.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium vanbaalenii PYR-1] Length = 357 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 146/373 (39%), Positives = 197/373 (52%), Gaps = 22/373 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+VAMSGGVDSSV AA + G+DV+GV L L +S + R GS CC+ +D DARR Sbjct: 1 MRVLVAMSGGVDSSVAAARMVDAGHDVVGVHLAL-SSAPGTLRTGSRGCCSKEDAGDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ +RF+ VI F SYA GETP PCV CN +KFS L + LG Sbjct: 60 VADVLGIPFYVWDFADRFKEDVIDDFVESYARGETPNPCVRCNERIKFSALSARALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY R DG+ + R +D ++DQSY L T +QL FP+GD K Sbjct: 120 DALATGHYARL-----TDGR----LRRAVDHDKDQSYVLAVLTAEQLRHAVFPIGDTPKP 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 ++R+ A GL +ADK+DS DICF+ G + G +V G +L H+G Sbjct: 171 AIREEAARRGLAVADKADSHDICFIPSGDTRAFLGARIG--VRRGSVVDATGAVLAEHDG 228 Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 + +TIGQR+GLG+ G P +V +D + V VG LEV + + Sbjct: 229 VHGFTIGQRKGLGIPGPGPDGRPRYVTGIDAETGTVHVGDVTDLEVTSLLGEAPVFTSGV 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 A +C V++R+ V + D + V GVA GQ V Y SD + Sbjct: 289 ----APDAPVECAVQVRAHGGVVDAVAELRDGALEVSLRTPLRGVAPGQTLVLYRSDPDG 344 Query: 375 ARVLGGGIISGSK 387 VLG IS ++ Sbjct: 345 DEVLGSATISAAR 357 >gi|198274021|ref|ZP_03206553.1| hypothetical protein BACPLE_00158 [Bacteroides plebeius DSM 17135] gi|198273099|gb|EDY97368.1| hypothetical protein BACPLE_00158 [Bacteroides plebeius DSM 17135] Length = 375 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 118/374 (31%), Positives = 188/374 (50%), Gaps = 21/374 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV+V MSGG+DSS +L+ GY+V+GVT++ ++ AS +V +A+ Sbjct: 4 REKRVLVGMSGGIDSSAACIMLQEQGYEVVGVTMRTWD--VASHFTPGNDQPNEVIEAQE 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + H+V D FR ++ F Y G TP PCV CN K L + Sbjct: 62 LAARLGIEHHVADVRTEFRQVIVQYFIDEYMRGRTPNPCVMCNPLFKERILCEWADKCNC 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY + + D R + D +DQSYFL+ Q+ L + FPLG M K Sbjct: 122 AWIATGHYCQLK-----DLNGYRYILTGDDPLKDQSYFLWKLPQEILKRMMFPLGGMTKA 176 Query: 199 SVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILG 254 SVRD G + A +S +ICF+++ Y + +K I G V G LG Sbjct: 177 SVRDYLASKGFEAKARGGESMEICFIEK-DYREFLKEHCPDIDERIGPGWFVDNKGLKLG 235 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +H G YTIGQR+GL +A+G+P +V+ ++ + V++G + L+ + + + + N Sbjct: 236 QHKGFAYYTIGQRKGLEIALGKPAYVLKINPAKNTVMLGDADQLKTYYMLVEDYN----V 291 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 +++ + V+IR +P V D+G + V FE+ + GQ+ VFY + Sbjct: 292 ASLAELLNCKELSVRIRYRSRSIPCRVILLDNGQLLVRFEQEASAITPGQSAVFYEGN-- 349 Query: 374 EARVLGGGIISGSK 387 RVLGGG I+ + Sbjct: 350 --RVLGGGFIASQQ 361 >gi|317969133|ref|ZP_07970523.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. CB0205] Length = 397 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 138/398 (34%), Positives = 198/398 (49%), Gaps = 31/398 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 + +EA L L + P + RV V +SGGVDSS+ AALL G++V G+TL L + Sbjct: 15 VAATEAGALAIERLRQWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMS---- 70 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 KG+CC + + DA VC+ + V H+V D+ E F+ ++ Y AG TPLPC C Sbjct: 71 --GKGACC-AEGLVDAAGVCEQLEVPHHVVDFREHFKEQIVDFLVQGYEAGVTPLPCSRC 127 Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 NR VKF +L ++ D +ATGHY R R + R + R +D +DQSYFL+ Sbjct: 128 NREVKFGPMLRWAKEERKIDRIATGHYARVRHGDQSE-NGRHQLLRGLDERKDQSYFLYD 186 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAG 238 Q+ L L FPLG++ K R A GL A K +SQD+C G + Sbjct: 187 LPQEALGRLVFPLGELTKPDTRLEADRHGLRTAQKPESQDLCLADHHGSMKAFLDAYLP- 245 Query: 239 IALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL 298 G IV +GQ++G H+GI ++TIGQR+GLGVA EPL VV LD ++V+V PR Sbjct: 246 -PRPGQIVLADGQVVGEHDGIEHFTIGQRKGLGVAWSEPLHVVRLDGVMNQVVVAPRRDA 304 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-----------G 347 + +NW+ + V++R P + + Sbjct: 305 ARGEAVVGAVNWVSIA----PPTEPLDVEVQVRYRSGPQQARLIPLPETESDRAADRPHR 360 Query: 348 VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385 ++F + + + GQA VFY + VLGGG+I Sbjct: 361 CRLEFAEEQFSITPGQAAVFYAGE----MVLGGGLIQR 394 >gi|118617523|ref|YP_905855.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium ulcerans Agy99] gi|166235069|sp|A0PPW5|MNMA_MYCUA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205822174|sp|B2HIE6|MNMA_MYCMM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|118569633|gb|ABL04384.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase TrmU [Mycobacterium ulcerans Agy99] Length = 363 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 137/371 (36%), Positives = 190/371 (51%), Gaps = 20/371 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRV 79 M+V+ AMSGGVDSSV AA + G+DV+GV L L + A + CC+ +D DARRV Sbjct: 1 MKVLAAMSGGVDSSVAAARMVDAGHDVVGVHLALSTAPGALRTGSRGCCSKEDASDARRV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + YV+D+ ERF+ VI F SSYA GETP PC+ CN+ +KFS L + LG D Sbjct: 61 ADVLGIPFYVWDFAERFKEDVIDDFVSSYARGETPNPCIRCNQRIKFSALYAKALALGFD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 V+ TGHY R + R +D ++DQSY L T +QL FP+GD K Sbjct: 121 VVVTGHYARLSEG---------RLRRAVDQDKDQSYVLAVLTAEQLRHAMFPIGDTPKPQ 171 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R+ A GL +ADK DS DICF+ G + G +V G +L H+G+ Sbjct: 172 IREEASRRGLAVADKPDSHDICFIPSGNTQTFLGERIG--VRRGTVVDAAGAVLATHDGV 229 Query: 260 INYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 +TIGQR+GLG+ G P +V +D + V VG L+VH + R + Sbjct: 230 HGFTIGQRKGLGIPGPGPDGRPRYVTAIDAETGTVRVGDVADLQVHALTGRAPIFTAGT- 288 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 A +C V++R+ + + D + V GVA GQ V Y D + Sbjct: 289 ---APTGPLECAVQVRAHGETTSAVAELVGDELSVRLHSPLRGVARGQTLVLYRPDPDGD 345 Query: 376 RVLGGGIISGS 386 VLG I+ + Sbjct: 346 EVLGSATITAT 356 >gi|255020959|ref|ZP_05293015.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidithiobacillus caldus ATCC 51756] gi|254969750|gb|EET27256.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidithiobacillus caldus ATCC 51756] Length = 348 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 154/364 (42%), Positives = 211/364 (57%), Gaps = 21/364 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+VVA+SGGVDS+V AALL G+D++GVTL+L+ + CC +D+ DA +C Sbjct: 3 RIVVALSGGVDSAVAAALLADAGHDLVGVTLRLWP-------QSRCCDERDIEDAADLCA 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + + V DY +RFR A++ PF + Y AG TP PC CN+ +KF+ L + LGAD L Sbjct: 56 QLGIPYRVLDYRQRFREAIVEPFVADYLAGRTPNPCARCNQLLKFTALWQESAALGADFL 115 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY+R R VGDD + R +D +DQSYFLFA + L LRFPLG+ +KE VR Sbjct: 116 ATGHYVRLR-EVGDD----WQLRRAVDERKDQSYFLFAVPGELLPRLRFPLGEWRKEEVR 170 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 AR+ GL IA K DSQD+CF+ G +K GDIV G +LG+H G+++ Sbjct: 171 TWARQRGLAIAAKGDSQDLCFIPDGDTGAFIKSQTQVEVRPGDIVDATGAVLGQHEGLVH 230 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YT+GQRRGLG P +V+ LD +R+ VGP +L LR+ NWL +V Sbjct: 231 YTVGQRRGLGGGAAVPRYVLALDAKHNRLQVGPEAALFRGEARLRDCNWLT----TQSVA 286 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 VK+R + PVP ++ D ++ F + + GQA V Y D R+LGG Sbjct: 287 LDTPVTVKLRYAASPVPATLRLLDGAAAHLRFATPQRAITPGQAAVCYDGD----RLLGG 342 Query: 381 GIIS 384 G I+ Sbjct: 343 GWIA 346 >gi|330881196|gb|EGH15345.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. glycinea str. race 4] Length = 303 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 107/307 (34%), Positives = 165/307 (53%), Gaps = 18/307 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VC Sbjct: 2 KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + + ++ + + V F Y AG TP P + CNR +KF L LGAD+ Sbjct: 59 DKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K V Sbjct: 119 IATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH+G++ Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLM 231 Query: 261 NYTIGQRRGLGVA-----MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLG 312 +TIGQR+GLG+ +P +V+ D +++ +IVG L + EI W Sbjct: 232 YHTIGQRQGLGIGGLKDASDDPWYVLVKDLDNNELIVGQGNDHPWLFSRALVSSEIYWAN 291 Query: 313 DGLFEDA 319 Sbjct: 292 PIDLSSP 298 >gi|257466420|ref|ZP_05630731.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|315917577|ref|ZP_07913817.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium gonidiaformans ATCC 25563] gi|313691452|gb|EFS28287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium gonidiaformans ATCC 25563] Length = 350 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 135/378 (35%), Positives = 203/378 (53%), Gaps = 30/378 (7%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 + +++ + K +RV VA+SGGVDSS VA LLK+ GYD+ GVT++ C Sbjct: 1 MVNMEYREENKKVRVGVALSGGVDSSTVAYLLKKQGYDIFGVTMK-------------TC 47 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 +D DA++VC+ + + HYV D E F V+ F Y G+TP PC+ CNR +KF Sbjct: 48 HAED-ADAKKVCEDLGIDHYVLDLTEPFSEKVMDYFVEEYMRGKTPNPCMVCNRHIKFGK 106 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL GA +ATGHY + DG + D +DQ YFL +++L + Sbjct: 107 LLDFILGQGAQYMATGHYTKLV-----DG----HLSVGDDGGKDQVYFLSQVPKEKLKKI 157 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVH 247 FP+G+++K VR+LA+E+G+ + K DSQ+ICFV+ GK + + ++ + +G+IV Sbjct: 158 IFPVGELEKTQVRELAKELGVRVYAKKDSQEICFVEDGKLKEFLIEKTKGKVYNKGNIVD 217 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 NG+ILG+HNG+ YTIGQR+GLG++ PL+VV L+ + +IVG E L ++ + Sbjct: 218 KNGKILGKHNGLAFYTIGQRKGLGISSESPLYVVELNSERNEIIVGTNEDLMREQLTAEQ 277 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACV 366 N E+ + C+ K RS ++ D V F + V GQ V Sbjct: 278 CNLFLVDKLEE--LHNMNCYAKTRSRDTLHACRLEVIGDEVIAHFIDNKVRAVTPGQGVV 335 Query: 367 FYTSDSNEARVLGGGIIS 384 FY +V+ GG I Sbjct: 336 FYN---ELGQVIAGGFIK 350 >gi|126338828|ref|XP_001378676.1| PREDICTED: similar to Zona pellucida protein C [Monodelphis domestica] Length = 428 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 119/388 (30%), Positives = 179/388 (46%), Gaps = 34/388 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV A+SGGVDS+V A LL+R GY+V GV ++ +++ G C A +D DA RVC Sbjct: 13 RVACAVSGGVDSAVAALLLRRRGYEVTGVFMRNWDALDEVSGSG-CSADRDCEDAARVCR 71 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 +++ + + + + V F S Y G TP P + CN+ +KF LGAD Sbjct: 72 LLDIPFRQVAFVKEYWHHVFTDFLSEYEKGRTPNPDILCNKHIKFKAFFHYALDCLGADA 131 Query: 141 LATGHYIRSRLYVGD-----DGKRRRIMCR-------------PMDLERDQSYFLFATTQ 182 +ATGHY R+ L + + R R + R DL +DQ++FL Q Sbjct: 132 MATGHYARTSLEDEEVFAQKEEPRPRGLFRNRFEVRNTVKLLQGADLWKDQTFFLSQAPQ 191 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 + L FPLG + K V+ +A E GL + + +S ICF+ + + + Sbjct: 192 EALRRTLFPLGGLTKAFVKKIAAENGLHHVLQRKESMGICFIGKRHLESFLLQYLQ--PQ 249 Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RES 297 G+ V + + ++LG H G +T+GQ +G + +P +VV D S V V P + Sbjct: 250 PGNFVSIEDNKVLGTHQGCFLFTLGQGAKIG-GLRDPWYVVEKDLRSGDVFVAPGPDHPA 308 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355 L + ++W+ + V D C + R VP + N DG V+V K Sbjct: 309 LYRDLLRTGRVHWIAEEPPAPLVQDKMMDCHFRWRHQMALVPCVLTLNQDGTVWVTAVKP 368 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383 +A GQ VFY D LG G I Sbjct: 369 MKALAPGQFAVFYKGD----ECLGSGKI 392 >gi|21312518|ref|NP_082339.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Mus musculus] gi|14195274|sp|Q9DAT5|MTU1_MOUSE RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1 gi|12838169|dbj|BAB24110.1| unnamed protein product [Mus musculus] gi|26335739|dbj|BAC31570.1| unnamed protein product [Mus musculus] gi|26336146|dbj|BAC31758.1| unnamed protein product [Mus musculus] gi|33867793|gb|AAQ55218.1| 5'methylaminomethyl-2-thiouridylate-methyltransferase [Mus musculus] gi|38512243|gb|AAH61026.1| TRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Mus musculus] gi|148672470|gb|EDL04417.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Mus musculus] Length = 417 Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats. Identities = 118/388 (30%), Positives = 183/388 (47%), Gaps = 36/388 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV A+SGGVDS+V A LL+R GY V GV ++ ++S +G C A +D DA +VC Sbjct: 6 HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLD---EQGVCAADKDCEDAYKVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140 +++ + Y + + N V F + Y G TP P ++CN+ +KFS LGAD Sbjct: 63 ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDINCNKHIKFSCFYHYAVDNLGADA 122 Query: 141 LATGHYIRSRLYVGDDGKRRR------------------IMCRPMDLERDQSYFLFATTQ 182 +ATGHY R+ L + +++ + + D +DQ++FL +Q Sbjct: 123 VATGHYARTSLEDEEVFEQKHTKKPDGLFRNRFEVRNPVKLLQAADSFKDQTFFLSQVSQ 182 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 L FPLG++ K+ V+ +A E L + K +S ICF+ + + + Sbjct: 183 DALRRTIFPLGELTKDFVKKIAAENSLHHVLQKRESMGICFIGKRNLEHFLLQYLQ--PR 240 Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RES 297 G V + + +LG H G YT+GQR + + EP +VV D V+V P + Sbjct: 241 PGKFVSIEDNTVLGTHKGWFLYTLGQRAKIS-GLREPWYVVEKDGTKGDVLVAPRVDHPA 299 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355 L + ++W+ + V D +C + R VP + N DG V+V K+ Sbjct: 300 LYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVKA 359 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383 G+A GQ VFY + LG G I Sbjct: 360 VRGLALGQFAVFYKGE----ECLGSGKI 383 >gi|329121788|ref|ZP_08250404.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dialister micraerophilus DSM 19965] gi|327468061|gb|EGF13549.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dialister micraerophilus DSM 19965] Length = 352 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 128/366 (34%), Positives = 199/366 (54%), Gaps = 27/366 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RV+ AMSGGVDS++ LL+ GY+V G T+QL++ GQ++ DA+ + Sbjct: 7 KRVIAAMSGGVDSTLTVRLLQEAGYEVFGATMQLFD-------------GQNLNDAKEMA 53 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGAD 139 + + H V D E ++ V+ F SY G TP PC+ C+ +KF ++ D Sbjct: 54 KFLGIKHAVIDIRELYKKIVLEYFIDSYKNGITPNPCMMCDFKLKFGVFYDESKAMFDCD 113 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ATGHY R V D +++ + + +DL +DQSY ++ TQ+QL + FPLG + K+ Sbjct: 114 YFATGHYSR---IVFDSERQKYEVRKAVDLPKDQSYMMYHLTQEQLSRIIFPLGRICKKD 170 Query: 200 VRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R +++E GL +K++SQDICF+ + Y D +K EG IV+ G+ILG+H+G Sbjct: 171 TRRISKEKGLPTYNKAESQDICFLTSEQSYVDFLKEEAPEAFNEGFIVNKKGKILGKHHG 230 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I NYTIGQR+GLG+ P +VV +D ++++IVG E L ++ +++ + Sbjct: 231 IPNYTIGQRKGLGIYAKTPQYVVSIDAKNNKIIVGENEDLFRTKLLAKDLAFTDG----K 286 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 F K+R V+ DDG V F++ + + SGQ+ VFY D R+ Sbjct: 287 PPAQEFTAEGKVRYGMKVHKCHVKLQDDGRATVTFDQPQRAITSGQSVVFYEGD----RL 342 Query: 378 LGGGII 383 +GGG I Sbjct: 343 IGGGTI 348 >gi|94984899|ref|YP_604263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Deinococcus geothermalis DSM 11300] gi|205816613|sp|Q1J090|MNMA_DEIGD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|94555180|gb|ABF45094.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Deinococcus geothermalis DSM 11300] Length = 381 Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats. Identities = 139/380 (36%), Positives = 205/380 (53%), Gaps = 19/380 (5%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 ++ RV+ AMSGGVDSSV AALLK GY VIG ++ + K +CC+ Y+ Sbjct: 4 QDKASQRVLCAMSGGVDSSVTAALLKDAGYQVIGAMMRFWPDDKRVDTFDTCCSPDAAYE 63 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 ARRV + + V Y+ DY E+F++ ++ PF S YA G TP PCV+CN VKF +L+ + Sbjct: 64 ARRVAEQVGVPFYLLDYREQFQHHIVGPFLSEYAQGRTPNPCVNCNTKVKFDELVKKAKM 123 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LG +ATGHY++ +DG R D +DQ+YFL+ T ++ L + FP+G++ Sbjct: 124 LGCRYVATGHYVKR--VEREDGSVEFH--RGDDPRKDQTYFLWGTPREALPFILFPVGEL 179 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254 +K VR++A E GL A K +SQ+ICFV GK D V +G I + G+++G Sbjct: 180 EKPRVREIAAEKGLLTARKPESQNICFVP-GKVQDFVAEHLPQ--RQGLIREIRTGEVVG 236 Query: 255 RHNGIINYTIGQRRGLGVAMGEP-LFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 H G YT+GQ++GLG+ VV+LD ++ V VG E + N+L Sbjct: 237 EHLGTQFYTLGQKKGLGLYQTHRVRHVVHLDPETNTVWVGDYEDCLWTGLKAEGANYL-- 294 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 D + V++R PV V ++ G + FE+ + VA GQ+ V Y Sbjct: 295 ---LDLAELPREVEVQVRYRTKPVRATVLHADEHGFELQFEEPQFAVAPGQSAVLYAG-- 349 Query: 373 NEARVLGGGIISGSKRSDAV 392 R+LGGG+I+ R+ V Sbjct: 350 --TRLLGGGLIADHARNLPV 367 >gi|205821882|sp|A0QJE5|MNMA_MYCA1 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 358 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 139/374 (37%), Positives = 200/374 (53%), Gaps = 22/374 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDSSV AA + G+DV+GV L L ++ + R GS CC+ +D DARR Sbjct: 1 MRVLAAMSGGVDSSVAAARMVDAGHDVVGVHLAL-STAPGTLRTGSRGCCSKEDASDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ E+F+ VI F S+YA GETP PCV CN+ +KFS L + LG Sbjct: 60 VADVLGIPFYVWDFAEKFQADVIDEFVSAYARGETPNPCVTCNQKIKFSALSAKAVALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R + R +D ++DQSY L + +QL FP+GD K Sbjct: 120 DAVATGHYARLS---------GGRLRRAVDKDKDQSYVLAVLSAEQLRHAAFPIGDTPKP 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R+ A GL +A+K DS DICF+ G + G +V+ +G +L H+G Sbjct: 171 QIREEAARRGLAVAEKPDSHDICFIPSGNTRAFLGERIG--VRRGAVVNADGTVLAEHDG 228 Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 + +TIGQR+GLG+A G P +V +D +++ V VG L+V + R + + Sbjct: 229 VHGFTIGQRKGLGIAGPGPDGRPRYVTAIDADTATVRVGEAADLDVREMLGRAVVFTSGT 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 A F+C V++R+ + + D + V GVA GQ Y D + Sbjct: 289 ----APSGPFECAVQVRAHGETADAVAELVGDELVVRLRAPLRGVAPGQTLALYRHDPDG 344 Query: 375 ARVLGGGIISGSKR 388 VLG I+G+ R Sbjct: 345 DEVLGSATIAGTSR 358 >gi|109094553|ref|XP_001111019.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like isoform 2 [Macaca mulatta] Length = 422 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 118/388 (30%), Positives = 183/388 (47%), Gaps = 35/388 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV A+SGGVDS+V A LL+R GY V GV ++ ++S G C A +D DA RVC Sbjct: 6 HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEH---GVCTADKDCEDAYRVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140 +++ + Y + + N V F + Y G TP P + CN+ +KFS LGAD Sbjct: 63 ILDIPFHQVSYIKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122 Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQ 182 +ATGHY R+ L + +++ I + + D +DQ++FL +Q Sbjct: 123 IATGHYARTSLEDEEVFQQKHIKRPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQ 182 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 L FPLG + KE V+ +A E L + K +S +CF+ + + + + + Sbjct: 183 DALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQ-SYLQPR 241 Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RES 297 G + + + ++LG H G YT+GQR +G + EP +VV D V V P + Sbjct: 242 PGHFISIEDNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDGVKGNVFVAPRRDHPA 300 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355 L + ++W+ + V D +C + R VP + N DG V+V ++ Sbjct: 301 LYRDLLRTSRVHWITEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVQA 360 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383 + +GQ VFY D LG G I Sbjct: 361 VHALTTGQFAVFYKGD----ECLGSGKI 384 >gi|254776291|ref|ZP_05217807.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium avium subsp. avium ATCC 25291] Length = 358 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 139/374 (37%), Positives = 200/374 (53%), Gaps = 22/374 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDSSV AA + G+DV+GV L L ++ + R GS CC+ +D DARR Sbjct: 1 MRVLAAMSGGVDSSVAAARMVDAGHDVVGVHLAL-STAPGTLRTGSRGCCSKEDASDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ E+F+ VI F S+YA GETP PCV CN+ +KFS L + LG Sbjct: 60 VADVLGIPFYVWDFAEKFQADVIDAFVSAYARGETPNPCVTCNQKIKFSALSAKAVALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R + R +D ++DQSY L + +QL FP+GD K Sbjct: 120 DAVATGHYARLS---------GGRLRRAVDKDKDQSYVLAVLSAEQLRHAAFPIGDTPKP 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R+ A GL +A+K DS DICF+ G + G +V+ +G +L H+G Sbjct: 171 QIREEAARRGLAVAEKPDSHDICFIPSGNTRAFLGERIG--VRRGAVVNADGTVLAEHDG 228 Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 + +TIGQR+GLG+A G P +V +D +++ V VG L+V + R + + Sbjct: 229 VHGFTIGQRKGLGIAGPGPDGRPRYVTAIDADTATVRVGEAADLDVREMLGRAVVFTSGT 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 A F+C V++R+ + + D + V GVA GQ Y D + Sbjct: 289 ----APSGPFECAVQVRAHGETADAVAELVGDELVVRLRAPLRGVAPGQTLALYRRDPDG 344 Query: 375 ARVLGGGIISGSKR 388 VLG I+G+ R Sbjct: 345 DEVLGSATIAGTSR 358 >gi|209529646|ref|NP_001129348.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Rattus norvegicus] gi|149065691|gb|EDM15564.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase (predicted), isoform CRA_a [Rattus norvegicus] Length = 417 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 117/388 (30%), Positives = 183/388 (47%), Gaps = 36/388 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV A+SGGVDS+V A LL+R GY V GV ++ ++S +G C A +D DA +VC Sbjct: 6 HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLD---EQGICAADKDCEDAYKVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140 +++ + Y + + N V F + Y G TP P + CN+ +KFS LGAD Sbjct: 63 ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDISCNKHIKFSCFHHYAVDNLGADA 122 Query: 141 LATGHYIRSRLYVGDDGKRRR------------------IMCRPMDLERDQSYFLFATTQ 182 +ATGHY R+ L + +++ + + D +DQ++FL +Q Sbjct: 123 VATGHYARTSLEDEEVFEQKHTKRPDGLFRNRFEVRNPVKLLQAADSFKDQTFFLSQVSQ 182 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 L FPLG++ K+ V+ +A E L + K +S ICF+ + + + Sbjct: 183 DALRRTIFPLGELTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNLEHFLLQYLQ--PR 240 Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RES 297 G + + + ++LG H G YT+GQR + + EP +VV D V+V P + Sbjct: 241 PGKFISIEDNRVLGTHKGWFLYTLGQRAKIS-GLSEPWYVVEKDGTKGDVLVAPRVDHPA 299 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355 L + ++W+ + V D +C + R VP + N DG V+V K+ Sbjct: 300 LYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVKA 359 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383 G+A GQ VFY + LG G I Sbjct: 360 VRGLALGQFAVFYKGE----ECLGSGKI 383 >gi|257452558|ref|ZP_05617857.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Fusobacterium sp. 3_1_5R] gi|317059098|ref|ZP_07923583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 3_1_5R] gi|313684774|gb|EFS21609.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 3_1_5R] Length = 350 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 135/378 (35%), Positives = 203/378 (53%), Gaps = 30/378 (7%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 + +++ + K +RV VA+SGGVDSS VA LLK+ GYD+ GVT++ C Sbjct: 1 MVNMEYREENKKVRVGVALSGGVDSSTVAYLLKKQGYDIFGVTMK-------------TC 47 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 +D DA++VC+ + + HYV D E F V+ F Y G+TP PC+ CNR +KF Sbjct: 48 HAED-ADAKKVCEDLGIDHYVLDLTEPFSEKVMDYFVEEYMRGKTPNPCMVCNRHIKFGK 106 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL GA +ATGHY + DG + D +DQ YFL +++L + Sbjct: 107 LLDFILGQGAQYMATGHYTKLV-----DG----HLSVGDDGGKDQVYFLSQVPKEKLKKI 157 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVH 247 FP+G+++K VR+LA+E+G+ + K DSQ+ICFV+ GK + + ++ + +G+IV Sbjct: 158 IFPVGELEKIQVRELAKELGVRVYAKKDSQEICFVEDGKLKEFLIEKTKGKVYNKGNIVD 217 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 NG+ILG+HNG+ YTIGQR+GLG++ PL+VV L+ + +IVG E L ++ + Sbjct: 218 KNGKILGKHNGLAFYTIGQRKGLGISSESPLYVVELNSERNEIIVGTNEDLMREQLTAEQ 277 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACV 366 N E+ + C+ K RS ++ D V F + V GQ V Sbjct: 278 CNLFLVDKLEE--LHNMNCYAKTRSRDTLHACRLEVLGDEVIAHFIDNKVRAVTPGQGVV 335 Query: 367 FYTSDSNEARVLGGGIIS 384 FY +V+ GG I Sbjct: 336 FYN---ELGQVIAGGFIK 350 >gi|313892248|ref|ZP_07825841.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dialister microaerophilus UPII 345-E] gi|313119386|gb|EFR42585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dialister microaerophilus UPII 345-E] Length = 352 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 128/366 (34%), Positives = 199/366 (54%), Gaps = 27/366 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RV+ AMSGGVDS++ LL+ GY+V G T+QL++ GQ++ DA+ + Sbjct: 7 KRVIAAMSGGVDSTLTVRLLQEAGYEVFGATMQLFD-------------GQNLDDAKEMA 53 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGAD 139 + + H V D E ++ V+ F SY G TP PC+ C+ +KF ++ D Sbjct: 54 KFLGIKHAVIDIRELYKKIVLEYFIDSYKNGVTPNPCMMCDFKLKFGVFYDESKAMFDCD 113 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ATGHY R V D +++ + + +DL +DQSY ++ TQ+QL + FPLG + K+ Sbjct: 114 YFATGHYSR---IVFDSERQKYEVRKAVDLPKDQSYMMYHLTQEQLSRIIFPLGRICKKD 170 Query: 200 VRDLAREMGLDIADKSDSQDICFV-QQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 R +++E GL +K++SQDICF+ + Y D +K EG IV+ G+ILG+H+G Sbjct: 171 TRRISKEKGLPTYNKAESQDICFLTSEQSYVDFLKEEAPEAFNEGFIVNKKGKILGKHHG 230 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I NYTIGQR+GLG+ P +VV +D ++++IVG E L ++ +++ + Sbjct: 231 IPNYTIGQRKGLGIYAKTPQYVVSIDAKNNKIIVGENEDLFRTKLLAKDLAFTDG----K 286 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 F K+R V+ DDG V F++ + + SGQ+ VFY D R+ Sbjct: 287 PPAQEFTAEGKVRYGMKVHKCHVKLQDDGRATVTFDQPQRAITSGQSVVFYEGD----RL 342 Query: 378 LGGGII 383 +GGG I Sbjct: 343 IGGGTI 348 >gi|318042099|ref|ZP_07974055.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. CB0101] Length = 394 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 138/398 (34%), Positives = 201/398 (50%), Gaps = 31/398 (7%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 + + A L L P + RV V +SGGVDSS+ AALL G+ V G+TL L + Sbjct: 15 VAATPAGALALERLQAWPGEHRVAVGLSGGVDSSLTAALLVEAGWQVEGLTLWLMS---- 70 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 KG+CC + + DA +C+ + V H+V D+ E F+ ++ Y G TPLPC C Sbjct: 71 --GKGACC-AEGLVDAAGICEQLGVEHHVVDFREHFKEQIVDFLVQGYGDGITPLPCSRC 127 Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 NR VKF +L ++ G +ATGHY R D R + R +D ++DQSYFL+ Sbjct: 128 NREVKFGPMLHWAQEERGISRIATGHYARVCHGEQSD-NGRHQLLRGLDRQKDQSYFLYD 186 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAG 238 Q+ L L FPLG++ K R A GL A+K +SQD+C G + Sbjct: 187 LPQEALGRLVFPLGELTKADTRVEAARHGLRTAEKPESQDLCLADHHGSMRAFLDTYLP- 245 Query: 239 IALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL 298 +G+IV +GQ++G+H+GI ++TIGQR+GLGVA EPL VV LD +RV+V PR Sbjct: 246 -PRQGEIVLEDGQVVGQHDGIQHFTIGQRKGLGVAWSEPLHVVRLDGVMNRVVVAPRRDA 304 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-----------DDG 347 + +NW+ ++ + + V++R V + Sbjct: 305 ARSDAVVGAVNWVSIAPPQEPI----EVEVQVRYRSGAVAARLSPLDATDADAAAGRPHR 360 Query: 348 VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385 ++F + + + GQA VFY D RVLGGG+I Sbjct: 361 CRLEFAEEQFSITPGQAAVFYAGD----RVLGGGLIQR 394 >gi|183220730|ref|YP_001838726.1| tRNA-specific 2-thiouridylase MnmA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189910831|ref|YP_001962386.1| tRNA-specific 2-thiouridylase MnmA [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|205816873|sp|B0SPC6|MNMA_LEPBP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205816879|sp|B0SG84|MNMA_LEPBA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|167775507|gb|ABZ93808.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167779152|gb|ABZ97450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 380 Score = 399 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 134/370 (36%), Positives = 199/370 (53%), Gaps = 13/370 (3%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA--SKRKGSCCAGQDVYD 75 + +++VAMSGGVDS+V A LL GYDVIGV L+ + K SCC+ +D+ D Sbjct: 2 KEKEKIIVAMSGGVDSAVAAGLLMEAGYDVIGVNLRTWEYEAPACDTTKKSCCSPEDIRD 61 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 AR V ++N+ YV E+ F VI F S Y G TP PCV+CN VKF L ++ Sbjct: 62 ARDVGLSLNIPFYVIKMEKVFGERVIDRFISDYKDGRTPNPCVECNTFVKFGALFEQAKK 121 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LG D +ATGHY R G R + +D++++Q+Y+L+ +Q + + FPLG+M Sbjct: 122 LGIDKIATGHYARVIEVDG-----RYAIRNAVDMKKNQTYYLYGLSQDNIKNTVFPLGEM 176 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 K VR++A+ MGL +A+K +SQ+ICF+ + Y +K+ G +GQI+G+ Sbjct: 177 DKSEVREIAKRMGLPVAEKPESQEICFIPENDYRSFLKK-KGMEFTPGFFKLASGQIIGK 235 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H G +TIGQR+GLG+A PL+V+ ++ + V++G E L EI + L Sbjct: 236 HQGKEGFTIGQRKGLGIAWKNPLYVLSIE-DDGTVVLGEEEETVSESFVLEEITY--QAL 292 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 A+ + V+IR PV V + V+F + V GQ+ FY +N Sbjct: 293 APLALGQSMEMKVQIRYRSAPVHCKVTSLGETWKVNFLEDVKSVTPGQSATFY--PTNGD 350 Query: 376 RVLGGGIISG 385 + GGII Sbjct: 351 YLFAGGIIQK 360 >gi|240047229|ref|YP_002960617.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma conjunctivae HRC/581] gi|239984801|emb|CAT04780.1| tRNA-specific 2-thiouridylase mnmA [Mycoplasma conjunctivae] Length = 370 Score = 399 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 116/389 (29%), Positives = 185/389 (47%), Gaps = 36/389 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDVY 74 R+VV +SGGVDSSV A LLK+ G++VI V ++ ++S + KG+ C +D Sbjct: 3 RIVVGLSGGVDSSVTAYLLKQQGHEVIAVFMRNWDSTINNDIKGNDSYQDHICPQEKDWL 62 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133 DA+++ +++ + D+ + + N V Y G+TP P + CN+ +KF L+ + Sbjct: 63 DAQKIAKQLDIPIHRVDFIDEYWNEVFEDLIEKYKNGKTPNPDILCNKNIKFKHFLNYSI 122 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + AD +A GHY ++ + D +DQSYFL + +QL + FPLG Sbjct: 123 EKFKADFIAMGHYAKT---------ENSFLFEAKDENKDQSYFLSQLSNEQLKKVLFPLG 173 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252 D K+ VR +A E L DK DS ICF+ + ++ D ++ + G+IV + +I Sbjct: 174 DYTKDQVRKIAFEQNLITHDKKDSTGICFIGERRFSDFLQNYIP--SQPGNIVDITTQKI 231 Query: 253 LGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 +GRH G + +TIGQR+G G+ M +P FVV + + V P R L + + + Sbjct: 232 VGRHVGAMYFTIGQRKGFGLSGMSQPYFVVGHNLAQKILYVAPQDQRHWLVSNNLLASHL 291 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVF 367 N L + K R Q V V ++ D D V ++ V GQ V Sbjct: 292 NILNANF------NPNNLKAKFRYHQKAVAVQIKIIDNDQFQVYYDD-FEAVTPGQEVVI 344 Query: 368 YTSDSNEARVLGGGIISGSKRSDAVEESL 396 Y V+ G I ++ + L Sbjct: 345 YDG----PMVVISGQIEKVFQNQKELDYL 369 >gi|116747617|ref|YP_844304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Syntrophobacter fumaroxidans MPOB] gi|205828997|sp|A0LEL7|MNMA_SYNFM RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|116696681|gb|ABK15869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Syntrophobacter fumaroxidans MPOB] Length = 362 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 144/374 (38%), Positives = 189/374 (50%), Gaps = 21/374 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + +RV VAMSGGVDS A LLK G DV GV ++ R G CAG + + Sbjct: 3 RSLRVAVAMSGGVDSLRAAILLKEQGNDVFGVHMR----HVPPSRTGRWCAGAMIREKEA 58 Query: 79 -VCD---TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 +C+ V D + F + VI PF +Y G+TP PC+ CN VKF L+ R Sbjct: 59 FLCELGLRFGFPIAVVDLRDAFESHVIEPFMEAYLLGQTPNPCIFCNPAVKFGFLMEKAR 118 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 LGA+ ATGHY R RR + R DL +DQSYFL+ +Q QL FPLG Sbjct: 119 ALGAERFATGHYARVSPPGPT--SRRFRLLRGSDLSKDQSYFLYGLSQDQLASTLFPLGS 176 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA--GIALEGDIVHLNGQI 252 +K V A ++G+ +SQ+ICFV GKY + + EG I+ L G+ Sbjct: 177 TRKRDVSAWAGQLGIASLFPGESQEICFVPAGKYHEFLTERLDTLHAPAEGPILDLEGRE 236 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 LGRH GI YTIGQRRGLG+A PL+VV L+ ++ V VG L+ R+ + +NW+ Sbjct: 237 LGRHKGIFAYTIGQRRGLGIASSAPLYVVGLEPAANAVRVGRVGDLDRDRLEVGRVNWVS 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 A +C V+IR+ P V + V FE + V GQ+ VFY D Sbjct: 297 I----PAPNVPVRCRVRIRNQHAPAAAVVTPVGERSASVRFEAPQRAVTPGQSAVFYDGD 352 Query: 372 SNEARVLGGGIISG 385 VLGGG IS Sbjct: 353 V----VLGGGTISK 362 >gi|283769381|ref|ZP_06342280.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bulleidia extructa W1219] gi|283104038|gb|EFC05422.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bulleidia extructa W1219] Length = 378 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 107/383 (27%), Positives = 186/383 (48%), Gaps = 29/383 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73 M+++V +SGGVDS++ A LL++ G++V ++ ++S G+ C D Sbjct: 1 MKILVGLSGGVDSAIAAYLLRQQGHEVTCAFMRNWDSVANGDFSGNPTLNDPVCSQESDY 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ V D + + D+ + + + V F + Y G TP P + CNR +KF++ ++ Sbjct: 61 ADAQAVADKLGLPLLRVDFIKEYWDDVFQTFLNDYKKGRTPNPDILCNRYIKFAEFMNFA 120 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 ++ G + +ATGHY++ G ++ + D +DQSYFL ++ L + FPL Sbjct: 121 QKKGFETVATGHYVKLGYENG-----HGVLMKADDRNKDQSYFLAEVHREVLDHVVFPLA 175 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQI 252 +++K VRD+A E+GL IA K DS ICF+ + + + G I++ + +I Sbjct: 176 EIEKPKVRDMAFELGLSIAKKKDSTGICFIGERNFRAFLSNYLP--MKPGKIMNIVEQKI 233 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 +G H G++ YTIGQR+GL + P FVV + ++ + V R L + +N Sbjct: 234 VGEHKGVLYYTIGQRKGLDIGGIGPFFVVGKNVETNTLYVVDQEHRSWLRSDSCLVTHVN 293 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368 WL D +F K R Q V +++ D+ + + + + V GQ V Y Sbjct: 294 WLADRMF------PLNGGAKFRYRQQDQAVTMEKVDEQTLLLKYPQGVEAVTPGQEAVLY 347 Query: 369 TSDSNEARVLGGGIISGSKRSDA 391 + + GG I ++ Sbjct: 348 DGNVM----IAGGQIDVVYQNGQ 366 >gi|75055053|sp|Q5RB73|MTU1_PONAB RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1 gi|55728489|emb|CAH90987.1| hypothetical protein [Pongo abelii] Length = 422 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 118/389 (30%), Positives = 182/389 (46%), Gaps = 37/389 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV A+SGGVDS+V A LL+R GY V GV ++ ++S G C A +D DA RVC Sbjct: 6 HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEH---GVCTADKDCEDAYRVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140 +++ + Y + + N V F + Y G TP P + CN+ +KFS LGAD Sbjct: 63 ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122 Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFAT-T 181 +ATGHY R+ L + +++ I + + D + Q++FL + Sbjct: 123 IATGHYARTSLEDEEVFEQKHIKKPEGLFRNRFEVRNAVKLLQAADSFKGQTFFLSQVFS 182 Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 Q L FPLG + KE V+ +A E L + K +S +CF+ + + + + Sbjct: 183 QDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQ--P 240 Query: 241 LEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RE 296 G + + + ++LG H G YT+GQR +G + EP +VV D V V P Sbjct: 241 RPGHFISIEDNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVAPRTDHP 299 Query: 297 SLEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEK 354 +L + ++W+ + V D +C + R VP + N DG V+V + Sbjct: 300 ALYRDLLRTSRVHWIAEEPPAVLVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVQ 359 Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGII 383 + +A+GQ VFY D LG G I Sbjct: 360 AVRALATGQFAVFYKGD----ECLGSGKI 384 >gi|145224833|ref|YP_001135511.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium gilvum PYR-GCK] gi|315445164|ref|YP_004078043.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium sp. Spyr1] gi|189040505|sp|A4TDZ4|MNMA_MYCGI RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|145217319|gb|ABP46723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium gilvum PYR-GCK] gi|315263467|gb|ADU00209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium sp. Spyr1] Length = 357 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 143/372 (38%), Positives = 192/372 (51%), Gaps = 22/372 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+VAMSGGVDSSV AA + G+DV+GV L L +S + R GS CC+ +D DARR Sbjct: 1 MRVLVAMSGGVDSSVAAARMVAAGHDVVGVHLAL-SSAPGTLRTGSRGCCSKEDAGDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ +RF+ VI F SYA GETP PCV CN +KFS L S LG Sbjct: 60 VADVLGIPFYVWDFADRFKEDVIDDFVESYARGETPNPCVRCNERIKFSALASRALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY R DG+ + R +D ++DQSY L T +QL FP+GD K Sbjct: 120 DALATGHYARLA-----DGR----LRRAVDHDKDQSYVLAVLTAEQLRHAVFPIGDTPKA 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R+ A +GL +ADK+DS DICF+ G + G++V G +L H+G Sbjct: 171 QIREEAARLGLAVADKADSHDICFIPSGDTKAFLGARIG--VRRGNVVDAAGTVLAEHDG 228 Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 + +TIGQR+GLG+ G P +V +D + V VG LEV + + Sbjct: 229 VHGFTIGQRKGLGIPGPGPDGSPRYVTGIDAQTGTVHVGDVADLEVTSLQGDAPVFTSGV 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 A +C V++R+ + D + V GVA GQ V Y D Sbjct: 289 ----APTGPLECVVQVRAHGGVADAVAELRGDTLEVSLRTPLRGVAPGQTLVLYRRDPAG 344 Query: 375 ARVLGGGIISGS 386 VL I + Sbjct: 345 DEVLASATIRAT 356 >gi|302035751|ref|YP_003796073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Nitrospira defluvii] gi|300603815|emb|CBK40147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Nitrospira defluvii] Length = 360 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 129/371 (34%), Positives = 195/371 (52%), Gaps = 23/371 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS------KRKGSCCAGQDVYDA 76 V++ MSGGVDSSV A+LL + GYDV G+TLQ++ + CC + A Sbjct: 6 VLLGMSGGVDSSVAASLLVQQGYDVHGITLQVWEHEDDQIAVSKRWEERGCC---KIGIA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + V + + + V D E F+ VI F + YA+G TP PCV CN VK L ++ ++ Sbjct: 63 KYVAQRLRIPYEVVDRREVFQQGVIDDFVAGYASGTTPNPCVRCNERVKLRSLYALAQER 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 G D +ATGHY R + G + + R +D +DQSYFL+ L L FP+G M+ Sbjct: 123 GMDHVATGHYARVQQVNG-----QWSLHRALDARKDQSYFLYRINPAWLPRLLFPVGHMQ 177 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K V A +GL + + +SQ+ICFV G Y +++ G V ++G++LG+H Sbjct: 178 KCDVWQEAESLGLPVEELKESQEICFVSHGDYRTFIEQEMPEAKKPGSFVGVDGEVLGQH 237 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 GI YT GQRRGLG+A+G+ L+V + S +V++ + L + +++ L Sbjct: 238 AGIAFYTPGQRRGLGIAVGQRLYVQKVVPESGQVVLCAEDQLVQSECQVADLSLFDHALG 297 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 VV VK+R + P + ++ + V F + + ++ GQ+ VFY D Sbjct: 298 RQPVVAD----VKVRYATPPCQATLLPSEIGTLQVRFHQPQRALSPGQSAVFYDGD---- 349 Query: 376 RVLGGGIISGS 386 RVLGGGII S Sbjct: 350 RVLGGGIIQRS 360 >gi|300781387|ref|ZP_07091241.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium genitalium ATCC 33030] gi|300533094|gb|EFK54155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium genitalium ATCC 33030] Length = 361 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 141/371 (38%), Positives = 192/371 (51%), Gaps = 20/371 (5%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRVCDTINV 85 MSGGVDSSV AA L G+DV+GV L L ++ CC+ +D DARRVCD + + Sbjct: 1 MSGGVDSSVAAARLVDAGHDVVGVHLALSKDAHQTRESARGCCSLEDSADARRVCDKLGI 60 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145 YV+D+ +RF+ VI F SYA GETP PC+ CN +KF+ LL QLG D +ATGH Sbjct: 61 PFYVWDFSDRFKEDVIDDFVDSYARGETPNPCLRCNEKIKFAALLERAVQLGFDAIATGH 120 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y DG + R +D ++DQSY L T+ +L FP+GD +K +R+ A Sbjct: 121 YALI------DGAG--NLRRSIDPQKDQSYVLGVMTRDELDRCIFPVGDTEKPQIREEAA 172 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 G A K DS DICF+ G + R G IV +G L H+G YTIG Sbjct: 173 AYGFSTASKPDSYDICFIPDGNTQAFLGRSIG--MRPGMIVDESGAELKEHDGAFQYTIG 230 Query: 266 QRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL-FEDAV 320 QR+GL + A G+P +V +D + V VGPR +L+V I+ + L + + Sbjct: 231 QRKGLNIRVPAADGKPRYVTDIDAATGTVTVGPRAALDVRTIHADRLKILHEAMSAASQC 290 Query: 321 VDGFKCFVKIRSSQDPVPVF--VQRNDDGVYVDFEKSEVGVASGQACVFY--TSDSNEAR 376 D V+IR+ V V + D + ++ + GVA GQA V Y D Sbjct: 291 SDPIAAHVQIRAHGGVVSCTAHVDLDADTMTLELAEPLSGVARGQAAVLYLPDPDGQGDV 350 Query: 377 VLGGGIISGSK 387 VLG G I G++ Sbjct: 351 VLGSGTICGTE 361 >gi|149276507|ref|ZP_01882651.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pedobacter sp. BAL39] gi|149233027|gb|EDM38402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pedobacter sp. BAL39] Length = 353 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 121/362 (33%), Positives = 191/362 (52%), Gaps = 17/362 (4%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDARRVCDTIN 84 MSGGVDSSV A +L GY+VIG+T++ ++ + +S ++ CC+ + DAR + Sbjct: 1 MSGGVDSSVAAVMLHEQGYEVIGLTMKTWDYATSGSSSKETGCCSLDSINDARTLAVNYG 60 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 HY+ D + F + VI F Y AG TP PCV CN +K+ LL +L + +ATG Sbjct: 61 FPHYILDIRDEFGDYVIDNFVDEYLAGRTPNPCVLCNTHIKWEALLKRANKLDCEFIATG 120 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY R + R ++ + +D +DQSY L+ +Q+ L +FPLG K +R +A Sbjct: 121 HYANVRQHD----NGRHVISKGLDENKDQSYVLWGVSQENLARTKFPLGSFAKSEIRQMA 176 Query: 205 REMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRHNGII 260 +MG ++A KS+S +ICFV Y ++ + G+ + +G ++G+H G Sbjct: 177 LDMGQEELAKKSESYEICFVPDNDYRSFLRHKVGDLEERVAGGNFITSDGMVVGQHKGYP 236 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQR+GLG+A GEP+FV + S+ V++G + LE +R +N + + + Sbjct: 237 FYTIGQRKGLGIAFGEPMFVTKILPESNTVMLGRADELERGEALVRNLNLIKYENILNPM 296 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 D KIR + + D + V F+ + +A GQ+ VFY + +LGG Sbjct: 297 DD---VITKIRYKDAGTLSTIVQEKDKMRVVFDHAVSAIAPGQSAVFYEGND----LLGG 349 Query: 381 GI 382 G Sbjct: 350 GF 351 >gi|197294784|ref|YP_001799325.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Phytoplasma australiense] gi|226704773|sp|B1VAX7|MNMA_PHYAS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|171854111|emb|CAM12100.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Candidatus Phytoplasma australiense] Length = 375 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 113/382 (29%), Positives = 180/382 (47%), Gaps = 32/382 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS------CCAGQDVY 74 +VVV +SGGVDS+V A LLK+ GY+V V ++ ++S+ +G+ C D Sbjct: 2 KKVVVGLSGGVDSAVSALLLKKAGYEVEAVFMRNWDSQLNFDFQGNPTLNDVCPQELDYK 61 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133 DA +V + + + ++ E + V + F +++ TP P + CN +KF ++ Sbjct: 62 DALKVSLQLGIKLHRVNFIEEYWQKVFLYFINAFKNNLTPNPDILCNNEIKFKAFINYAT 121 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +L +A GHY R D ++ + P+D +DQ+YFL QL ++ FPL Sbjct: 122 SKLKPQYIAMGHYARLIY----DKNQKVSLACPLDKNKDQTYFLSQLKTSQLKNILFPLA 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 D+ K+ VR +A E GL A K DS ICF+ + +F + A +G I L+G L Sbjct: 178 DLTKKEVRKIALENGLINACKKDSTGICFIGERNFFQFLNNYLP--AQKGSIKRLDGTFL 235 Query: 254 GRHNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLR 306 H G+I+YTIGQR+ LG+ EP FVV + ++ + V L R + Sbjct: 236 TYHKGVIHYTIGQRKNLGLGNFSSGQEPFFVVGKNLKTNTLYVEPNSQHPHLYSDRALII 295 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQAC 365 ++ W G+ + K+R Q V + D + + + + + V GQ C Sbjct: 296 DVTWRGEKTKT-------QIQAKMRYRQPNQKVTLNWLDANTLEILYPQKIKAVTPGQIC 348 Query: 366 VFYTSDSNEARVLGGGIISGSK 387 FY D LG G+I Sbjct: 349 AFYDDDI----CLGAGVIKEVY 366 >gi|78212421|ref|YP_381200.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. CC9605] gi|123578503|sp|Q3AL87|MNMA_SYNSC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|78196880|gb|ABB34645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. CC9605] Length = 383 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 132/397 (33%), Positives = 198/397 (49%), Gaps = 33/397 (8%) Query: 2 VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61 + A L + P + RV + +SGGVDSS+ AALL G++V G+TL L + Sbjct: 6 TTTRAGEAALERLRQWPGEHRVAIGLSGGVDSSLTAALLVEAGWEVEGLTLWLMS----- 60 Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 KG+CC + + DA +C+ + + H+V D E F+ ++ Y G TPLPC CN Sbjct: 61 -GKGACC-AEGLVDAAGICEQLGIPHHVVDMRETFQQEIVQRLVDGYRDGITPLPCSQCN 118 Query: 122 RTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 R+VKF +L ++ +ATGHY R R + R + R +D +DQSYFL+ Sbjct: 119 RSVKFGPMLDWALQERKLPRIATGHYARIRHGGD---RGRHQLLRGLDTRKDQSYFLYDL 175 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGI 239 Q+ L + FPLG++ K R A GL A+K +SQD+C G + Sbjct: 176 PQEVLGRIVFPLGELTKPDTRLEAARHGLRTAEKPESQDLCLADHHGSMRAFLDAYLP-- 233 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE 299 +G+IV +G ++G H+GI ++T+GQR+GLGVA GEPL V+ LD +RV+V PR Sbjct: 234 PRQGEIVLADGTVVGEHDGIEHFTVGQRKGLGVAWGEPLHVIRLDAAMNRVVVAPRAEAG 293 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-----------DDGV 348 + +NW+ D + V++R PV + Sbjct: 294 RDSCVVGAVNWVSI----DPIEAPRTVEVQVRYRSTPVRAELSPLPAIEADQQRERPHRC 349 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385 + FE+ + + GQA VFY ++ VLGGG+I Sbjct: 350 RLSFEEEQFSITPGQAAVFYDGET----VLGGGLIQR 382 >gi|33866156|ref|NP_897715.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. WH 8102] gi|81572928|sp|Q7TTU4|MNMA_SYNPX RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|33639131|emb|CAE08137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. WH 8102] Length = 396 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 133/394 (33%), Positives = 199/394 (50%), Gaps = 33/394 (8%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 L P + RV V +SGGVDSS+ AALL G++V G+TL L + KG+CC + + Sbjct: 23 LRTWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMS------GKGACC-AEGL 75 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA +C+ + + H+V D + F+ ++ Y G TPLPC CNR+VKF +L Sbjct: 76 VDAAGICEQLGIPHHVVDTRDTFQREIVQRLVDGYREGITPLPCSQCNRSVKFGPMLDWA 135 Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + G +ATGHY R R + G+ G R + R +D +DQSYFL+ Q+ L + FPL Sbjct: 136 AEERGLPRIATGHYARIR-HGGEQG--RHQLLRGLDSRKDQSYFLYDLPQEVLGRIVFPL 192 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQ 251 G++ K R A GL A+K +SQD+C G + +G+IV +G Sbjct: 193 GELTKADTRGEAARHGLRTAEKPESQDLCLADHHGSMRAFLDAYLP--PRQGEIVLSDGT 250 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 ++G H+GI ++TIGQR+GLGVA EPL V+ LD ++V+V PR + INW+ Sbjct: 251 VVGEHDGIEHFTIGQRKGLGVAWREPLHVIRLDPAMNQVVVAPRAEAGQRSCVVGAINWV 310 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-----------DDGVYVDFEKSEVGVA 360 + + V++R +PV + + F + + Sbjct: 311 SIAPLQQP----LELEVQVRYRSEPVAAQLTPIPHTPEDEARQRPHRCRLQFLDDQFSIT 366 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEE 394 GQA VFY ++ VLGGG+I ++ E Sbjct: 367 PGQAAVFYRGET----VLGGGLIQRDDQAQTNRE 396 >gi|227503892|ref|ZP_03933941.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium striatum ATCC 6940] gi|227199515|gb|EEI79563.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium striatum ATCC 6940] Length = 355 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 143/369 (38%), Positives = 191/369 (51%), Gaps = 24/369 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRVCDTINV 85 MSGGVDSSV AA G+DV+GV L L+ + ++ K CC+ +D DARR+CD + + Sbjct: 1 MSGGVDSSVAAARAVEAGHDVVGVHLALHKDAQQTREKARGCCSLEDSADARRICDKLGI 60 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145 YV+D+ E+F+ VI F SYA GETP PC+ CN +KF LL LG D +ATGH Sbjct: 61 PFYVWDFSEQFKEEVIGDFVDSYARGETPNPCLRCNEKIKFRALLQKGMALGFDAVATGH 120 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y DD M R D +DQSY L + ++L FP+GD K +R+ A Sbjct: 121 YATL-----DDAG---YMRRSKDENKDQSYVLGVISAEELEHCYFPIGDTPKPQIREEAA 172 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 G A K DS DICF+ G + G IV GQ L +H+G NYTIG Sbjct: 173 RHGFSTAKKPDSYDICFIPDGNTQAFLGSRIGL--RPGMIVDQEGQELKQHDGAWNYTIG 230 Query: 266 QRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 QR+GL + A G P +V +D S V VG RE L V I + +L A+ Sbjct: 231 QRKGLDIKEPTADGRPRYVTDIDAASGTVTVGSREDLAVSTIQADRLKYLH-----PAMD 285 Query: 322 DGFKCFVKIRSSQDPVPVF--VQRNDDGVYVDFEKSEVGVASGQACVFY--TSDSNEARV 377 +C V++R+ VP V R+ D + ++ ++ GVA GQA V Y + D V Sbjct: 286 GELECEVQVRAHGSVVPCKAYVDRDGDKMTLELKEPLSGVARGQAAVLYLPSPDELGDIV 345 Query: 378 LGGGIISGS 386 LG G I G+ Sbjct: 346 LGSGTICGT 354 >gi|289549263|ref|YP_003474251.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Thermocrinis albus DSM 14484] gi|289182880|gb|ADC90124.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Thermocrinis albus DSM 14484] Length = 349 Score = 397 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 141/365 (38%), Positives = 193/365 (52%), Gaps = 20/365 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MR+ V MSGGVDSSV A LLK +G++VIGVTL+ Y + ++ CC+ QDV DA V Sbjct: 1 MRIAVGMSGGVDSSVTALLLKEEGHEVIGVTLRFYKAVCNTEDLRVCCSPQDVKDAVLVS 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG-AD 139 + + H D+E+ F VI F Y G TP PC CNR VK L R + D Sbjct: 61 QRLGIPHITLDWEKIFYERVIKYFVEGYKEGITPNPCAVCNREVKTGFLARYLRNVALID 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 LATGHY+R Y+G ++ R D RDQSYF+ + + L FPLGD KE Sbjct: 121 RLATGHYVRKIQYMG-----YSLLARGKDTTRDQSYFMALVRGEDIPLLEFPLGDKTKEE 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E GL A K DSQ++CF+ + +K I EG IV+ G+++G+H G Sbjct: 176 VRKIAEEKGLPTARKRDSQEVCFLMGRSPGEYMKDILGE--REGPIVY-KGKVVGKHRGY 232 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YT+GQRRGL VA+G+P++V +D ++ V VG E L + L +IN+ Sbjct: 233 YAYTVGQRRGLSVALGKPVYVTGIDPITNTVFVGDEEELYKDWLLLEDINFHLPMHLWSR 292 Query: 320 VVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 V+ R V V +++ +G V ++ + GQ C FY D +L Sbjct: 293 PA------VQTRYRSKTVEVRDIEKLPNGYKVYLKEPVRAITPGQVCAFYEGDV----LL 342 Query: 379 GGGII 383 GGGII Sbjct: 343 GGGII 347 >gi|237756395|ref|ZP_04584939.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfurihydrogenibium yellowstonense SS-5] gi|237691446|gb|EEP60510.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfurihydrogenibium yellowstonense SS-5] Length = 352 Score = 397 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 134/367 (36%), Positives = 209/367 (56%), Gaps = 17/367 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VVV +SGGVDSS A LLK+ GY+V+G++L+ + CC+ +D+ DA++V Sbjct: 2 KKVVVGLSGGVDSSTAAFLLKKQGYEVVGISLKFTDIDSCEVDTQVCCSDKDILDAKKVA 61 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + HYV ++++ F VI F Y +G TP PC CNR VK + LG D Sbjct: 62 EFLEIPHYVINWKDIFEKKVINYFIEGYKSGLTPNPCSICNREVKTGLFAKYIKSLGFDY 121 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHYIR+ + G +++ R +D +DQSYF+ ++ + L FPLG++ KE V Sbjct: 122 LATGHYIRTDIEDG-----VKVLKRGIDKNKDQSYFMALVEREVVDTLIFPLGNLTKEEV 176 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A+E + ++ K +S +ICF + + K +N EG+IVH++G++LGRH GI Sbjct: 177 RKIAQENKIPVSQKEESFEICFTKGKSPEEYFKTLN-IKTNEGEIVHISGKVLGRHKGIE 235 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 NYTIGQRRGL +A EPL+V+ D +++++VG ++ L ++ ++ N+L + Sbjct: 236 NYTIGQRRGLNIAWKEPLYVIEKDALNNKIVVGEKDYLLTDKVVAKDFNFLV------PI 289 Query: 321 VDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 K V+ R Q P+ + + + V FE+ A GQ Y D+ +LG Sbjct: 290 EKWKKIEVQGRYKQKPIKAKEYHFDGENLTVIFEEKVPRFAPGQILAVYDGDT----LLG 345 Query: 380 GGIISGS 386 GGIIS S Sbjct: 346 GGIISRS 352 >gi|15827913|ref|NP_302176.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium leprae TN] gi|221230390|ref|YP_002503806.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium leprae Br4923] gi|3122976|sp|O33099|MNMA_MYCLE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|254811455|sp|B8ZS29|MNMA_MYCLB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|2414533|emb|CAB16422.1| hypothetical protein MLCB637.07 [Mycobacterium leprae] gi|13093466|emb|CAC30660.1| probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium leprae] gi|219933497|emb|CAR71802.1| probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium leprae Br4923] Length = 358 Score = 397 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 141/371 (38%), Positives = 195/371 (52%), Gaps = 22/371 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+V+ AMSGGVDSSV AA + G+DV+GV L L ++ + R GS CC+ +DV DARR Sbjct: 1 MKVLAAMSGGVDSSVAAARMVDAGHDVVGVHLAL-STVSGTLRTGSRGCCSKEDVSDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ E+F+ VI F S+YA GETP PCV CN+ +KFS L LG Sbjct: 60 VADVLGIPFYVWDFAEKFQEDVIDNFVSAYARGETPNPCVQCNQRIKFSALSVRALMLGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R + R +D +DQSY L T QQL FP+GD K Sbjct: 120 DTVATGHYARLS---------GGRLRRAVDRGKDQSYVLAVLTAQQLRHAAFPIGDTLKR 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR A GL +ADK DS ICF+ G + G +V +G +L H+G Sbjct: 171 QVRAEAARRGLLVADKPDSHGICFIPSGNTRAFLSECIG--IRRGSVVDADGTVLAEHDG 228 Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 + +T+GQR+GLG+ G P +V +D +++ V VG L VH + R + Sbjct: 229 VHGFTVGQRKGLGIVGPGPNGRPRYVTAIDADTATVYVGDAADLGVHTLIGRAPVFTAGA 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 A + +C V+IR+ + V+ D ++V + GVA GQ V Y D + Sbjct: 289 ----APLGPVQCVVQIRAHGETAVAVVELIGDELFVRLCEPLRGVARGQTLVLYRLDPDG 344 Query: 375 ARVLGGGIISG 385 VLG I+ Sbjct: 345 DEVLGSATIAS 355 >gi|169630437|ref|YP_001704086.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium abscessus ATCC 19977] gi|229486416|sp|B1MDW3|MNMA_MYCA9 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|169242404|emb|CAM63432.1| Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium abscessus] Length = 356 Score = 397 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 135/371 (36%), Positives = 198/371 (53%), Gaps = 22/371 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+++ AMSGGVDSSV AA + G++V+GV L L ++ + R GS CC+ +D DARR Sbjct: 1 MKILAAMSGGVDSSVAAARMVDAGHEVVGVHLAL-SAAPGTLRTGSRGCCSKEDAADARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ +RF+ VI F +YA G TP PCV CN +KF+ L LG Sbjct: 60 VADMLGIPFYVWDFADRFKEDVIDDFVEAYAEGRTPNPCVKCNEKIKFAALADRAVALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R + DG+ + R +D ++DQSY L T +QL FP+GD K Sbjct: 120 DAVATGHYARLQ-----DGR----LRRAVDADKDQSYVLGVLTPEQLRRAMFPVGDSPKP 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R A + GL +A+K DS DICF+ G + G++V +G +L H G Sbjct: 171 DIRAEAEQRGLLVANKPDSHDICFIPSGDTQAFLGARIG--VRRGNVVDADGSVLATHAG 228 Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 + +TIGQR+GLG+ A G P +V +D ++ V VG E LE+ + W Sbjct: 229 VHEFTIGQRKGLGLVGPAADGRPRYVTSIDAETATVRVGTVEDLEIWEFGGEPVVWTSGR 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 + +C V++R+ V V+ + ++V + GVA GQ V Y D+ Sbjct: 289 V----PGQPIECQVQVRAHGSVVDAIVEPGAERIHVRLRTALRGVAPGQTVVLYRPDAEG 344 Query: 375 ARVLGGGIISG 385 VLG +I+ Sbjct: 345 DEVLGSAVITR 355 >gi|330836254|ref|YP_004410895.1| tRNA-specific 2-thiouridylase mnmA [Spirochaeta coccoides DSM 17374] gi|329748157|gb|AEC01513.1| tRNA-specific 2-thiouridylase mnmA [Spirochaeta coccoides DSM 17374] Length = 357 Score = 397 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 133/375 (35%), Positives = 200/375 (53%), Gaps = 26/375 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAG----QDVYD 75 M+++V MSGG+DSSV A LLK+ GY+VIG T+ ++ + G+ C +++ + Sbjct: 1 MKILVGMSGGIDSSVAAWLLKQQGYEVIGATMSIWKEGTPYNGPAGNSCYQPETQEELAE 60 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 + +C I + H V D ++ + + V+ F + Y AG TP PCV CN +KF L+ R+ Sbjct: 61 IQEICRKIGIPHVVVDCQDMYEDIVLKNFRAEYLAGRTPNPCVWCNSKIKFGALIDFARK 120 Query: 136 LG--ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 G D ATGHY R D R + R +DL +DQ+YFL TQ+QL + FPLG Sbjct: 121 SGIEFDKFATGHYARVDF---DKKTGRYRLRRAVDLHKDQTYFLHRLTQEQLSSVIFPLG 177 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 DM K+ VR + E G + +SQD G Y D++ + +G+I+ G ++ Sbjct: 178 DMLKKDVRKIDEEQGFHAVGQEESQDFY---CGDYTDLL----GVVPGKGNIIDRQGTVM 230 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G H G+ NYTIGQR+GLG+A PL+VV L S+ V+VG E R+ + +++W Sbjct: 231 GTHTGVWNYTIGQRKGLGIASDRPLYVVELRPGSNEVVVGHEEDTLHTRVVIEDLSWSAV 290 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD-FEKSEVGVASGQACVFYTSDS 372 A+ +C +IRS+ +P V +D V F + GQ+ V Y D+ Sbjct: 291 A----ALDTPRECVARIRSASNPQMAMVSPGEDNTLVISFTGAVKAATPGQSLVVYDGDT 346 Query: 373 NEARVLGGGIISGSK 387 VL GGIIS ++ Sbjct: 347 ----VLCGGIISSAR 357 >gi|194334691|ref|YP_002016551.1| tRNA-specific 2-thiouridylase MnmA [Prosthecochloris aestuarii DSM 271] gi|194312509|gb|ACF46904.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prosthecochloris aestuarii DSM 271] Length = 362 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 124/378 (32%), Positives = 189/378 (50%), Gaps = 25/378 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK-GSCCAGQD 72 ++ V+V +SGGVDS+V A LL GY V G+ ++ + S S D Sbjct: 1 MNATISPTTVIVGLSGGVDSAVAACLLIEQGYSVTGLHIRTLDDSPDSAELVASTLVVSD 60 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 + + R + + FR VI+ F Y AG+TP PC CN+ +K+ LL Sbjct: 61 LDEYR-------FPVFSLNLSNSFREHVIMTFQKDYLAGKTPNPCTLCNKLIKWEGLLKG 113 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + GA+ +ATGHY R + + + +D ++DQSYFL+ ++ L FPL Sbjct: 114 AQLCGAEYVATGHYARIQHSDSSC-----RLLKGVDNKKDQSYFLWMLGRKTLEKTLFPL 168 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLN 249 G+ K VR LAR G+ A+K++SQ+ICFV Y +K G+ GDI+ Sbjct: 169 GEYSKPEVRQLARRFGIRAAEKTESQEICFVGDNNYRQFLKSSIPGLEQSVQGGDIIDEE 228 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 G ++G H G YTIGQR+GLG++ EPL+V +D +R+ VG ++ L R+ ++N Sbjct: 229 GSVIGHHTGYPFYTIGQRKGLGISSSEPLYVTTIDPKRNRIHVGGKQKLACSRLKAGQLN 288 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFY 368 W+G E K +IR + D D + V F++ + V GQA VFY Sbjct: 289 WIGIAPPERP----LKALGRIRYRDQESACTIIPLDGDRIEVLFDEPKNAVTPGQAIVFY 344 Query: 369 TSDSNEARVLGGGIISGS 386 + +LGGG+I+ + Sbjct: 345 HEE----ELLGGGVITAA 358 >gi|256425783|ref|YP_003126436.1| tRNA-specific 2-thiouridylase MnmA [Chitinophaga pinensis DSM 2588] gi|256040691|gb|ACU64235.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Chitinophaga pinensis DSM 2588] Length = 366 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 124/374 (33%), Positives = 194/374 (51%), Gaps = 19/374 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--SRKASKRKGSCCAGQDVYDA 76 + +V+VAMSGG+DS+V A +L GY+V+G+T++ ++ S +SK++ CC DA Sbjct: 3 RHGKVLVAMSGGIDSTVTALMLHEQGYEVVGITMKTWDYASAGSSKKETGCCNLDSFNDA 62 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R H+V D + F + VI F Y AG TP PCV CN +K+ L+ + Sbjct: 63 RAAAVHHGFPHFVLDIRDEFGDFVINNFVDEYIAGRTPNPCVLCNTHIKWRALMKRADAM 122 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 +ATGHY + R + R I+ + +D +DQSY L+ Q L PLG + Sbjct: 123 DCAFIATGHYAQIR-----EQDGRHILSKGIDDLKDQSYVLWGLQQDVLARTILPLGQYR 177 Query: 197 KESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQI 252 K +R +A + G +A K++S +ICFV Y +KR G+ + G+ V +G I Sbjct: 178 KTEIRQMAFDFGYPELAKKAESYEICFVPDNDYRGFLKRKVDGLEEQVNGGNFVLRDGTI 237 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G H G YTIGQR+GL +A+G P+FV + ++ V++G + L + + + +N + Sbjct: 238 VGHHKGYPFYTIGQRKGLDIALGRPVFVTEIIPETNTVVLGNEDELNRNEMTVAGLNMI- 296 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 D + +G + KIR + D V V+F + G+A GQ+ VFY D Sbjct: 297 ---KYDHIPEGMEAITKIRYKDKGALSNLYNVDGKVKVNFYEHVKGIAPGQSAVFYEGDD 353 Query: 373 NEARVLGGGIISGS 386 V+ GGII + Sbjct: 354 ----VIAGGIIQRA 363 >gi|326403958|ref|YP_004284040.1| tRNA-specific 2-thiouridylase MnmA [Acidiphilium multivorum AIU301] gi|325050820|dbj|BAJ81158.1| tRNA-specific 2-thiouridylase MnmA [Acidiphilium multivorum AIU301] Length = 345 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 176/364 (48%), Positives = 225/364 (61%), Gaps = 21/364 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MRVVVAMSGGVDSSVVA L+ G++VIGVTLQLY+ A+ RKG+CCAGQD++DAR V Sbjct: 1 MRVVVAMSGGVDSSVVAGLMHEAGHEVIGVTLQLYDHGAATSRKGACCAGQDIHDARNVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + ++HYV D E FR AVI FA SYA G TP+PCV CN+ +KF DLL + R LGA+ Sbjct: 61 DRLGIAHYVIDAEAAFRAAVIGDFAESYAEGRTPVPCVRCNQHLKFGDLLGLARDLGAEA 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199 LATGHY+R +DG + R +D RDQS+FLFATT+ QL RFPLG M K++ Sbjct: 121 LATGHYVRR-----EDGPEGAELHRAVDARRDQSWFLFATTRDQLAFSRFPLGTMPDKDA 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A M L +A+K DSQDICFV G Y D+V ++ A G+IV +G +L RH GI Sbjct: 176 VRAEAARMNLPVAEKPDSQDICFVPSGTYADIVAKLRPDAAAPGEIVTEDGAVLDRHQGI 235 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YT+GQ + LG A G V +D R++VGPR + + + E NWL D Sbjct: 236 ARYTVGQAKRLGAASGH--VVTRIDAARRRIVVGPRGA-GGREVRIAEPNWL-----IDP 287 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 F+ VK+R+ + P P + + V + + A GQACV Y E+RVLG Sbjct: 288 PAAPFRASVKLRAGETPHPAEIDIARN--LVTLDTPALA-APGQACVVYR----ESRVLG 340 Query: 380 GGII 383 GG I Sbjct: 341 GGFI 344 >gi|229814917|ref|ZP_04445255.1| hypothetical protein COLINT_01960 [Collinsella intestinalis DSM 13280] gi|229809404|gb|EEP45168.1| hypothetical protein COLINT_01960 [Collinsella intestinalis DSM 13280] Length = 409 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 143/414 (34%), Positives = 198/414 (47%), Gaps = 54/414 (13%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RV+VAMSGGVDSSV A LL + GYD +G T+ L+ G+C +G D DA +C Sbjct: 4 KRVLVAMSGGVDSSVTAYLLTQQGYDCLGATMLLH----GDAAPGACGSGSDADDAAAIC 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + H V D E F V+ F +Y G TP PC+DCNR +KF LLS R+ D Sbjct: 60 ARLGFPHEVIDMRETFERHVVEKFVRTYETGRTPNPCIDCNRHLKFDALLSYAREHDCDF 119 Query: 141 LATGHYIRSRLYVGDDG----------------------KRRRIMCRPMDLERDQSYFLF 178 +ATGHY R G + +D +DQSY L+ Sbjct: 120 IATGHYGRIGTLAEGGGGSVRRGEEQEFVARITARTGASNAVHTLSCALDPSKDQSYVLY 179 Query: 179 ATTQQQLCDLRFPLGDMKKE-SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINA 237 + TQ++L PLG + KE VR +ARE G + A K DSQ ICFV + +++ N Sbjct: 180 SLTQERLARTLLPLGGLFKERDVRRIAREQGFENAGKRDSQGICFVPDNDFATYIEKRNG 239 Query: 238 GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES 297 EGDIV+ +G +LGRH+G I YT+GQR+GLGVA P++V +D ++ V +G Sbjct: 240 APLPEGDIVNTSGHVLGRHHGAIRYTVGQRKGLGVACAHPVYVTGIDAVANTVTLGEVAD 299 Query: 298 LEVHRIYLREINW-----LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG----- 347 L + + W + + L ++A G KIR P ++R G Sbjct: 300 LMASGLVADDWIWSAPANVMEELLDEAGETGLPVSAKIRYRHPAQPARLRRATCGTTGSS 359 Query: 348 -------------VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388 + F+ E G+A GQA V Y D VLGGG + + + Sbjct: 360 AGANAIAENAANAFELIFDSPERGIAPGQAVVAYAGDI----VLGGGTVVRAIK 409 >gi|160946390|ref|ZP_02093599.1| hypothetical protein PEPMIC_00350 [Parvimonas micra ATCC 33270] gi|158447506|gb|EDP24501.1| hypothetical protein PEPMIC_00350 [Parvimonas micra ATCC 33270] Length = 350 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 132/361 (36%), Positives = 200/361 (55%), Gaps = 11/361 (3%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDS V LL ++GY+VIGVT+ L + CC+ V DA+ V + + V Sbjct: 1 MSGGVDSCVACHLLLKEGYEVIGVTMNLVPKGHLYDEEKGCCSLSSVMDAKIVAEAMGVK 60 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 HY + E F VI F Y+ G TP PCV CN+ +KF+ + R L AD ++TGHY Sbjct: 61 HYTMSFREEFDRKVIENFVREYSLGYTPNPCVACNKYIKFNSFVDKIRPLKADFISTGHY 120 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 + D R ++ R D ++DQ+YFL+ T+Q+ L FPL D++KE VR +A++ Sbjct: 121 AKVEF---DKNYNRYLLKRAKDSKKDQTYFLYNTSQEVLSKTLFPLADLEKEKVRQIAKD 177 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 + K DS++ICFVQ + +K+ N + EG V NG LG+H GI+ YT+GQ Sbjct: 178 ENILTYSKKDSEEICFVQNRDHGLFIKQRNPELIKEGYFVDENGNKLGKHKGIVYYTVGQ 237 Query: 267 RRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKC 326 R+GLG+A+G+ +FV ++ + V + ++L ++I +RE N++ DA+ + Sbjct: 238 RKGLGIALGKRVFVSKINAIDNTVTLSDEDALYKNKIRIREENFI----PFDALEKPLEV 293 Query: 327 FVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 VK+R Q + ++ ++V+FEK GQ+ VFY D V+GGGII Sbjct: 294 SVKVRHGQSETKGLLFYKNNDLFVEFEKQVRAPNKGQSAVFYLDDI----VVGGGIIDEV 349 Query: 387 K 387 Sbjct: 350 Y 350 >gi|47459275|ref|YP_016137.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma mobile 163K] gi|81614195|sp|Q6KHK4|MNMA_MYCMO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|47458604|gb|AAT27926.1| tRNA-methyltransferase (5-methylaminomethyl-2-thiouridylate) [Mycoplasma mobile 163K] Length = 370 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 102/380 (26%), Positives = 178/380 (46%), Gaps = 35/380 (9%) Query: 22 RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73 ++VVA+SGGVDSSV A +LK + ++VI V ++ ++S + G+ C +D Sbjct: 3 KIVVALSGGVDSSVTAFILKYQQNHEVIAVFMRNWDSFANNDILGNEDINQDICPQEKDW 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+++ +N+ Y D+ + + + V Y G TP P + CN+ +KF + Sbjct: 63 EDAKKIASQLNIPIYRVDFVKEYYDEVFTYLIEEYRQGRTPNPDIFCNKYIKFGKFIEYV 122 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + D +ATGHY + + + R D +DQSYFL + QL + FPL Sbjct: 123 EKNFNPDFIATGHYAKVENSL---------LYRAKDRNKDQSYFLSQLSSDQLKKIIFPL 173 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQ 251 D+ K+ +R +A E L A K DS ICF+ + + ++ + G+IV + + Sbjct: 174 KDLTKDVIRKIAAENNLVTAQKKDSTGICFIGERNFDKFLQNYIPN--MPGNIVDIETNE 231 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES---LEVHRIYLREI 308 ++G+H G++ YT+GQR+ M P +V D + + V S L+ ++ E Sbjct: 232 VVGQHVGVMYYTLGQRKINLSGMKYPYYVAGHDLKNKILYVASIHSKNYLKSDKLEAIEF 291 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVF 367 N + + K R Q+ + + + + + + + + V GQ V Sbjct: 292 NLINKNF------NKKNLTAKFRYRQEDIKIEILNIDKNKIEISYPDEFEAVTPGQHVVI 345 Query: 368 YTSDSNEARVLGGGIISGSK 387 Y +S +GGGII+ + Sbjct: 346 YDGES----CVGGGIINKTY 361 >gi|260435745|ref|ZP_05789715.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. WH 8109] gi|260413619|gb|EEX06915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. WH 8109] Length = 383 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 135/385 (35%), Positives = 197/385 (51%), Gaps = 33/385 (8%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 L + P + RV V +SGGVDSS+ AALL G+ V G+TL L + KG+CC + + Sbjct: 18 LRQWPGEHRVAVGLSGGVDSSLTAALLVEAGWQVEGLTLWLMS------GKGACC-AEGL 70 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA +C+ + + H+V D E F+ ++ Y G TPLPC CNR+VKF +L Sbjct: 71 VDAAGICEQLGIPHHVVDTRETFQQEIVQRLVDGYRDGITPLPCSQCNRSVKFGPMLDWA 130 Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 ++ +ATGHY R R + GD G R + R +D +DQSYFL+ Q+ L + FPL Sbjct: 131 LKERKLLRIATGHYARIR-HDGDQG--RHQLLRGLDTRKDQSYFLYDLPQEVLGRIVFPL 187 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQ 251 G++ K R A GL A+K +SQD+C G + +G+IV +G Sbjct: 188 GELTKPDTRLEAALHGLRTAEKPESQDLCLADHHGSMRAFLDAYLP--PRQGEIVLSDGT 245 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 ++G H+GI ++TIGQR+GLGVA EPL V+ LD +RV+V PR + +NW+ Sbjct: 246 VVGEHDGIEHFTIGQRKGLGVAWREPLHVIRLDAAMNRVVVAPRAEAGRDSCVVGAVNWV 305 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-----------DDGVYVDFEKSEVGVA 360 D + V++R PV + + F++ + + Sbjct: 306 SI----DPIEAPRTVEVQVRYRSTPVHAQLSPLPPTDADQQQERPHRCRLSFDEEQFSIT 361 Query: 361 SGQACVFYTSDSNEARVLGGGIISG 385 GQA VFY D+ VLGGG+I Sbjct: 362 PGQAAVFYDGDT----VLGGGLIQR 382 >gi|193216582|ref|YP_001999824.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma arthritidis 158L3-1] gi|229486415|sp|B3PM68|MNMA_MYCA5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|193001905|gb|ACF07120.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma arthritidis 158L3-1] Length = 370 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 113/377 (29%), Positives = 183/377 (48%), Gaps = 36/377 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAGQDV 73 RVV+ MSGGVDSSV A LL++ GY+V+G+ ++ ++S + G+ C QD Sbjct: 3 KRVVLGMSGGVDSSVCAYLLQQQGYEVVGLFMRNWDSFLNNDFLGNEAISQDVCPQEQDY 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ V +N+ Y D+ + + + V Y G TP P + CN+ +KF+ V Sbjct: 63 ADAKEVAKQLNIPLYRVDFIKEYWDHVFSYLIEEYKIGRTPNPDIFCNKYIKFNFFAQVA 122 Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + AD +A GHY ++G+ + + D +DQSYFL + +QL + FPL Sbjct: 123 FSKYQADFIAMGHYAYC-----ENGE----LFKAKDDSKDQSYFLAQLSNEQLKKVIFPL 173 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQ 251 ++ K+ VR++A+ + L A K DS ICF+ + K+ ++ A G I+ + Q Sbjct: 174 ANLTKQEVREIAKNLNLATATKKDSTGICFIGERKFTKFLENYIP--AQPGKIIDIATKQ 231 Query: 252 ILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLRE 307 ++G H G + YTIGQR+GL + +P FVV + + V E L ++ Sbjct: 232 VVGSHIGTMYYTIGQRKGLNLGGFSKPYFVVGHNLEKKVLYVANEDFPEYLLSDKLIAIG 291 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACV 366 N + D K R Q +P+ ++ + + V + +E V GQ V Sbjct: 292 FNQIAYKF------DTNNLSAKFRYRQKDIPIKLKLLANSEIEVSYNDTE-AVTPGQEIV 344 Query: 367 FYTSDSNEARVLGGGII 383 Y + +V+GG II Sbjct: 345 IYDGN----KVVGGAII 357 >gi|148260759|ref|YP_001234886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidiphilium cryptum JF-5] gi|205811039|sp|A5FZD5|MNMA_ACICJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|146402440|gb|ABQ30967.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidiphilium cryptum JF-5] Length = 345 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 176/364 (48%), Positives = 225/364 (61%), Gaps = 21/364 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MRVVVAMSGGVDSSVVA L+ G++VIGVTLQLY+ A+ RKG+CCAGQD++DAR V Sbjct: 1 MRVVVAMSGGVDSSVVAGLMHEAGHEVIGVTLQLYDHGAATGRKGACCAGQDIHDARNVA 60 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + ++HYV D E FR AVI FA SYA G TP+PCV CN+ +KF DLL + R LGA+ Sbjct: 61 DRLGIAHYVIDAEAAFRAAVIGDFAESYAEGRTPVPCVRCNQHLKFGDLLGLARDLGAEA 120 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199 LATGHY+R +DG + R +D RDQS+FLFATT+ QL RFPLG M K++ Sbjct: 121 LATGHYVRR-----EDGPEGAELHRAVDARRDQSWFLFATTRDQLAFSRFPLGTMPDKDA 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A M L +A+K DSQDICFV G Y D+V ++ A G+IV +G +L RH GI Sbjct: 176 VRAEAARMNLPVAEKPDSQDICFVPSGTYADIVAKLRPDAAAPGEIVTEDGAVLDRHQGI 235 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YT+GQ + LG A G V +D R++VGPR + + + E NWL D Sbjct: 236 ARYTVGQAKRLGAASGH--VVTRIDAARRRIVVGPRGA-GGREVRIAEPNWL-----IDP 287 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 F+ VK+R+ + P P + + V + + A GQACV Y E+RVLG Sbjct: 288 PAAPFRASVKLRAGETPHPAEIDIARN--LVTLDTPALA-APGQACVVYR----ESRVLG 340 Query: 380 GGII 383 GG I Sbjct: 341 GGFI 344 >gi|145219199|ref|YP_001129908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prosthecochloris vibrioformis DSM 265] gi|205816888|sp|A4SD47|MNMA_PROVI RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|145205363|gb|ABP36406.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobium phaeovibrioides DSM 265] Length = 357 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 193/374 (51%), Gaps = 25/374 (6%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDA 76 ++ V+V +SGGVDS+V A +L +GY VIG+ +++ +S +++ + S + + Sbjct: 2 KQETTVLVGISGGVDSAVAACMLVDEGYRVIGLNIKVLDSPESNPALQPSSLVISNREEF 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + Y + +RFR VI F Y A TP PC+ CN+ +K++ LL L Sbjct: 62 R-------IPVYTLNLSKRFREDVIGYFQEEYLAARTPNPCIVCNKKIKWAGLLEAADML 114 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD++ATGHY + G R + + D ++DQSYFL+ Q++L PLG + Sbjct: 115 NADLVATGHYASTAFLGG-----RCRLYQGADKKKDQSYFLWMLQQKELLKTILPLGTLA 169 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQIL 253 K VR+LAR G+ A+K +SQ+ICFV Y +++ +A G++V +G+++ Sbjct: 170 KPEVRELARSYGVPAAEKKESQEICFVPGDDYCRYLEQAIPDLAERVRGGELVDASGRVI 229 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G H G YTIGQRRGLG + GEP++V +D +R+ G + L + +NW+G Sbjct: 230 GHHRGYPFYTIGQRRGLGASTGEPIYVTSIDPVHNRIHTGKKTDLLSRELTASGMNWIGI 289 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + F+ +IR P P V D+ + F + + GQA V Y D Sbjct: 290 ----EPPKKPFEATARIRYRDAPTPCRVTPLEDNRATISFHSPKSAITRGQAAVIYRDD- 344 Query: 373 NEARVLGGGIISGS 386 VLGGG I + Sbjct: 345 ---EVLGGGSIVET 355 >gi|296192066|ref|XP_002743906.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1 [Callithrix jacchus] Length = 421 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 116/388 (29%), Positives = 180/388 (46%), Gaps = 36/388 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV A+SGGVDS+V A LLKR GY V GV ++ ++ G C A +D DA RVC Sbjct: 6 HVVCALSGGVDSAVAALLLKRRGYQVTGVFMKNWD---LLDEHGVCAADKDCEDAYRVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140 +++ Y + + N V F + Y G TP P + CN+ +KFS LGAD Sbjct: 63 ILDLPFRQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIICNKHIKFSCFFRYAVDNLGADA 122 Query: 141 LATGHYIRSRLYVGDDGKRRRI------------------MCRPMDLERDQSYFLFATTQ 182 +ATGHY R+ G+ +++ I + + D +DQ++FL +Q Sbjct: 123 IATGHYARTSQEDGEVFQQKHIKRPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQ 182 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 L FPLG + K+ V+ +A E L + K +S +CF+ + + + + + Sbjct: 183 DALRRTIFPLGGLTKDFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLP--SR 240 Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RES 297 G + + + ++LG H G YT+GQR +G + P +VV D V V P + Sbjct: 241 PGQFISIEDHKVLGTHKGWFLYTLGQRANIG-GLRAPWYVVEKDSAKGDVFVAPRLDHPA 299 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355 L + ++W+ + V D +C + R VP + N DG V+V ++ Sbjct: 300 LYRDLLRTSRVHWITEEPPAALVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVQA 359 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383 +A+GQ VFY LG G I Sbjct: 360 VHALATGQFAVFYKG----GECLGSGKI 383 >gi|113474569|ref|YP_720630.1| tRNA-specific 2-thiouridylase MnmA [Trichodesmium erythraeum IMS101] gi|123352667|sp|Q118B7|MNMA_TRIEI RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|110165617|gb|ABG50157.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Trichodesmium erythraeum IMS101] Length = 359 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 142/374 (37%), Positives = 207/374 (55%), Gaps = 31/374 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +++V +SGGVDSS AA+L GY V G+TL L K KG CC+ V DA +C+ Sbjct: 3 KIIVGLSGGVDSSTAAAILHHQGYQVEGLTLWLM------KGKGQCCSEGMV-DAAYICE 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 +++ H++ D F+ ++ + Y+AG TPLPC CN+TVKF +L+ R+ LG D Sbjct: 56 QLDIPHHIVDTRNLFQANIVDYLVTGYSAGITPLPCSQCNKTVKFGPMLAYGREKLGIDK 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R D R ++ R +D +DQSYFL+ TQ L FPLG+M K Sbjct: 116 IATGHYARLDYDSKSD---RYLLKRAIDRNKDQSYFLYDLTQYLLAGSVFPLGEMVKSET 172 Query: 201 RDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 R +A E GL ADK +SQD+C V+ G + + +G+IV G++LGRH+G+ Sbjct: 173 RRIAAEYGLKTADKPESQDLCLVESSGSMRAFLDKYI--TPHQGEIVDREGRVLGRHDGV 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQR+GLGV+ PL+V+ LD ++VIVG R+S ++ +NW+ Sbjct: 231 HHYTIGQRKGLGVSAPHPLYVIDLDPAMNKVIVGDRDSATKMESTVKLVNWVSIA----P 286 Query: 320 VVDGFKCFVKIRSSQDPVPVFV-------QRNDDGVYV--DFEKSEVGVASGQACVFYTS 370 + V++R PV + ++ DG V FE++ G+ GQA V+Y Sbjct: 287 PSTSIRAEVQVRYRSLPVAANIIPLGVNEEKPQDGFRVKLIFEEAVFGITPGQAAVWYEG 346 Query: 371 DSNEARVLGGGIIS 384 D +LGGGII Sbjct: 347 DI----LLGGGIIE 356 >gi|78188235|ref|YP_378573.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobium chlorochromatii CaD3] gi|123580466|sp|Q3ATZ5|MNMA_CHLCH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|78170434|gb|ABB27530.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobium chlorochromatii CaD3] Length = 359 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 127/371 (34%), Positives = 188/371 (50%), Gaps = 24/371 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 ++V +SGGVDS+V LL + GY V V L+L ++ A + + V V Sbjct: 4 PHHILVGISGGVDSAVATCLLVQQGYRVTAVNLRLLDTLDAPYAEPTLQPSSLV-----V 58 Query: 80 CDT--INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 D ++ + + FR+ V+ F + Y AG TP PC+ CNR VK++ L +G Sbjct: 59 SDHPDYHIPLFSLNLSRTFRDEVMRYFNAEYLAGRTPNPCMVCNRQVKWAGLRHAAELIG 118 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 A+ +ATGHY G R + + D ++DQSYFL+ +Q+ L PLG + K Sbjct: 119 ANAIATGHYANRAFSDG-----RYRLYKGADSQKDQSYFLWMLSQKDLAHTLLPLGGLTK 173 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQILG 254 VR+LA+ G+ A+K +SQ+ICFV Y + +A +GDIV G ++G Sbjct: 174 PEVRELAKNFGVRAAEKKESQEICFVPNDDYSTYLMSAMPELAERVADGDIVDAAGTVIG 233 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +H G YTIGQRRGLGV+ EPL+V LD +R+ VG + +L HR+ NW+G Sbjct: 234 KHRGYPFYTIGQRRGLGVSAKEPLYVTALDAEQNRIHVGHKAALMSHRLLASRCNWIGM- 292 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + + +IR V ++G + V F++ + + GQA VFY D Sbjct: 293 ---EPPSSSVELLGRIRYRDRQTACRVTPLENGQIEVVFQEPKSAITPGQAVVFYCGD-- 347 Query: 374 EARVLGGGIIS 384 VLGGG I Sbjct: 348 --EVLGGGFIE 356 >gi|189485341|ref|YP_001956282.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|205828982|sp|B1GZY9|MNMA_UNCTG RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|170287300|dbj|BAG13821.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 360 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 128/375 (34%), Positives = 204/375 (54%), Gaps = 30/375 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS---RKASKRKGSC--CAGQDVY 74 +M++++ +SGGVDS+V A LLK+ GY+V G T+ ++++ +K SC +++ Sbjct: 4 EMKILIGLSGGVDSAVAAYLLKKQGYEVTGTTMSIWDNFLPAPKTKVNDSCLGPENENIE 63 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 A ++ D + + YV D ++ V+ F + Y G TP PC+ CN +KF L + + Sbjct: 64 TAHKIADFLTIPLYVTDCSGEYKKVVLENFRNEYKEGRTPNPCIRCNAYIKFGILPAAVK 123 Query: 135 QLG--ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + G D ATGHY D + + DL +DQ+YFL+ TQ+ L + FPL Sbjct: 124 KTGLSFDKFATGHYANIGF---DSSTNMYKLYKAADLNKDQTYFLYRLTQKTLSETIFPL 180 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDI-CFVQQGKYFDVVKRINAGIALEGDIVHLNGQ 251 G KE VR++A+++GL A+K DSQD C G Y D+++ A G+IV NG+ Sbjct: 181 GIYTKEQVRNIAKKIGLPSAEKPDSQDFYC----GDYNDILQF----PANPGNIVDKNGR 232 Query: 252 ILGRHNGIINYTIGQRRGLG--VAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 +LG+HNGI NYTIG+R+GLG +PL+V+ + + V +G +E L + ++++ Sbjct: 233 VLGKHNGIWNYTIGKRKGLGLLGGTKDPLYVINISAKQNMVTIGTKEDLYSSSLTAKKVS 292 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFY 368 W + KIR P F+ +D V V+F + ++ V +GQ+ VFY Sbjct: 293 WCSIL----PPKKTIEATAKIRRQHKPEKAFIIPQEDSSVKVEFAQPQMSVTAGQSIVFY 348 Query: 369 TSDSNEARVLGGGII 383 D+ VLGGG+I Sbjct: 349 KDDT----VLGGGVI 359 >gi|254431220|ref|ZP_05044923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cyanobium sp. PCC 7001] gi|197625673|gb|EDY38232.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cyanobium sp. PCC 7001] Length = 399 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 143/392 (36%), Positives = 204/392 (52%), Gaps = 37/392 (9%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 L P + RV V +SGGVDSS+ AALL G++V G+TL L + KG+CC + + Sbjct: 25 LRHWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMS------GKGACC-AEGL 77 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA +C+ + V H+V D+ + FR ++ YAAG TPLPC CNR VKF+ +L+ Sbjct: 78 VDAAGICEQLGVPHHVVDFRDHFRAQIVDFLVDGYAAGVTPLPCSRCNREVKFAPMLAWA 137 Query: 134 RQ-LGADVLATGHYIRSR-------LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185 R+ G + LATGHY R R L V DG+ R + R +D +DQSYFL+ Q+ L Sbjct: 138 REQRGLERLATGHYARVRRADAADPLPVPGDGRGRHQLLRGLDARKDQSYFLYDLPQEVL 197 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGD 244 L FPLG++ K R A GL A K +SQD+C G + +G+ Sbjct: 198 GRLVFPLGELTKPDTRQEAERHGLRTAHKPESQDLCLADHHGSMRAFLDAHLP--PRDGE 255 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 IV +G+++GRH+GI ++TIGQR+GLGVA EPL VV LD +RV+V PR Sbjct: 256 IVLQDGRVVGRHDGIEHFTIGQRKGLGVAWSEPLHVVRLDAAFNRVVVAPRREAARGDCV 315 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-----------DDGVYVDFE 353 + +NW+ A + V++R P + V ++F Sbjct: 316 VGAVNWVSMA----APDAPLEVMVQVRYRSAPEWALLTPLPATEVDQAAQRPHRVRLEFA 371 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIISG 385 + + + GQA VFY + +LGGG+I Sbjct: 372 EEQFSITPGQAAVFYAGEV----LLGGGLIQA 399 >gi|227501721|ref|ZP_03931770.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium accolens ATCC 49725] gi|227077746|gb|EEI15709.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium accolens ATCC 49725] Length = 355 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 141/369 (38%), Positives = 190/369 (51%), Gaps = 24/369 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRVCDTINV 85 MSGGVDSSV AA G+DV+GV L L+ + ++ K CC+ +D DARR+CD + + Sbjct: 1 MSGGVDSSVAAARAVEAGHDVVGVHLALHKDAQQTREKARGCCSLEDSADARRICDKLGI 60 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145 YV+D+ E F+ VI F SY+ GETP PC+ CN +KF LL LG D +ATGH Sbjct: 61 PFYVWDFSEEFKEEVITDFVDSYSRGETPNPCLRCNEKIKFRALLQKGMALGFDAVATGH 120 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y + DDG M R D +DQSY L + ++L FP+GD K +R+ A Sbjct: 121 YAT----LDDDG----YMRRSKDENKDQSYVLGVISAEELDHCFFPIGDTPKPQIREEAA 172 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 G A K DS DICF+ G + G IV G L H+G NYTIG Sbjct: 173 AHGFSTAKKPDSYDICFIPDGNTQQFLGSRIGL--RPGMIVDQEGTELKEHDGAWNYTIG 230 Query: 266 QRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 QR+GL + A G P +V +D + V VG RE L V I + +L G+ D Sbjct: 231 QRKGLDIKAPAADGRPRYVTDIDAATGTVTVGAREDLAVTAIRADRLKYLHPGMDGD--- 287 Query: 322 DGFKCFVKIRSSQDPVPV--FVQRNDDGVYVDFEKSEVGVASGQACVFY--TSDSNEARV 377 F+C V++R+ VP V R D + ++ ++ GVA GQA V Y + D V Sbjct: 288 --FECEVQVRAHGSVVPCIAHVDRAADSMRLELKEPLSGVARGQAAVLYLPSPDDLGDIV 345 Query: 378 LGGGIISGS 386 +G G I + Sbjct: 346 IGSGTICET 354 >gi|311898474|dbj|BAJ30882.1| putative tRNA-specific 2-thiouridylase MnmA [Kitasatospora setae KM-6054] Length = 377 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 141/377 (37%), Positives = 189/377 (50%), Gaps = 22/377 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRV 79 RV+ AMSGGVDS+V AA G++V GV L L S S R G CC +D DARR Sbjct: 17 RVLAAMSGGVDSAVAAARAVEAGHEVTGVHLAL-ASNPQSFRTGARGCCTLEDSRDARRA 75 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + YV+D ERFR VI F + YAAG TP PC+ CN +KF+ LL LG D Sbjct: 76 ADVIGIPFYVWDLAERFREDVIDDFVAEYAAGRTPNPCLRCNEKIKFAALLDKAVALGFD 135 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 + TGHY R + D R + R D +DQSY L QL FPLGD K+ Sbjct: 136 AVCTGHYAR----IVDHPDGTRELHRAADAAKDQSYVLGVLDADQLAHSLFPLGDTTKDV 191 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R A GL +A K DS DICF+ G + GDI+ +G LG H+G Sbjct: 192 IRAEAERRGLAVAKKPDSHDICFIADGDTQGFLAERLGTA--PGDILDADGTKLGEHDGA 249 Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 +TIGQR+GL + G+P +V+ + + V VGP E L+VH + W G Sbjct: 250 YGFTIGQRKGLRLGRPAADGKPRYVLDISPVDNTVTVGPVEGLDVHALTAIRPRWCG--- 306 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + ++R+ + VPV +D ++V + G+A GQA V Y Sbjct: 307 --TPAAGEGRYTAQLRAHGEEVPVTAVLGEDELHVRLDTPARGIAPGQAVVLYDG----T 360 Query: 376 RVLGGGIISGSKRSDAV 392 RV+G I+ ++R+ V Sbjct: 361 RVVGSATIASTERAVGV 377 >gi|254820453|ref|ZP_05225454.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium intracellulare ATCC 13950] Length = 358 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 137/374 (36%), Positives = 196/374 (52%), Gaps = 22/374 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+V+ AMSGGVDSSV AA + G+DV+GV L L +S + R GS CC+ +D DARR Sbjct: 1 MKVLAAMSGGVDSSVAAARMVDAGHDVVGVHLAL-SSSPGTLRSGSRGCCSKEDASDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ E+F+ VI F SSYA GETP PCV CN+ +KFS L + LG Sbjct: 60 VADVLGIPFYVWDFAEKFQADVIDEFVSSYARGETPNPCVVCNQKIKFSALSARAVALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R + R +D ++DQSY L + +QL FP+GD K Sbjct: 120 DTVATGHYARLS---------GGRLRRAVDHDKDQSYVLAVLSAEQLRHAAFPIGDTPKS 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R A GL +A+K DS DICF+ G + G +V+ +G +L H+G Sbjct: 171 QIRAEAARRGLAVAEKPDSHDICFIPSGDTRAFLGSRIG--VRRGAVVNADGTVLAEHDG 228 Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 + +TIGQR+GLG+A G P +V +D ++ V VG LEV + R + Sbjct: 229 VHGFTIGQRKGLGIAGPGPDGRPRYVTAIDAETATVRVGDVAELEVRELTGRAPVFTSGV 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 + +C V++R+ + + + V GVA GQ V Y D + Sbjct: 289 TPSGPI----ECAVQVRAHGETADAVAELVGGELVVRLRVPLRGVAPGQTLVLYRPDPDG 344 Query: 375 ARVLGGGIISGSKR 388 V+G +I+ + R Sbjct: 345 DEVIGSAVIAATSR 358 >gi|225848332|ref|YP_002728495.1| tRNA-specific 2-thiouridylase MnmA [Sulfurihydrogenibium azorense Az-Fu1] gi|225644575|gb|ACN99625.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfurihydrogenibium azorense Az-Fu1] Length = 351 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 133/365 (36%), Positives = 204/365 (55%), Gaps = 18/365 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VVV +SGGVDSS A +LK+ GY VIG+TL+L + S K CC+ +D+ DA++V Sbjct: 2 KKVVVGLSGGVDSSTAAFILKQQGYQVIGITLKLSEVDQCSLDKQVCCSTKDILDAKKVA 61 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGAD 139 + + HYV D+++ F+ VI F Y +G TP PC CNR VK L ++ L AD Sbjct: 62 SFLGIPHYVIDWQDIFKEKVIDYFIREYQSGYTPNPCSICNREVKTGLLAKYAKKVLKAD 121 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ATGHYI++ G+ +++ R +D +DQSYF+ ++ + L FPLGD KE Sbjct: 122 FFATGHYIKTDFLDGE-----KVIKRGVDTSKDQSYFMALVEKEVIDMLIFPLGDFTKEE 176 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A E + ++ KS+S +ICF GK + + GDIVH++G++LG+H G+ Sbjct: 177 VRKIAYENKIPVSQKSESFEICF-TAGKTPEEYFKSLGIPLKIGDIVHVSGKVLGKHKGL 235 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YTIGQR+GLG+ EPL+V+ D + +IVG +E L + + N+L Sbjct: 236 EAYTIGQRKGLGIRWKEPLYVIDKDPIKNTIIVGEKEHLLTDTVVAKNFNFLV------P 289 Query: 320 VVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + V+ R Q P+ V + + + + F++ + +A GQ Y D+ +L Sbjct: 290 IEKWKNIQVQGRYRQKPIEVRDFHYDGELLKITFKEKQQKMAPGQILAVYQDDT----LL 345 Query: 379 GGGII 383 GGG+I Sbjct: 346 GGGVI 350 >gi|39938611|ref|NP_950377.1| tRNA-specific 2-thiouridylase MnmA [Onion yellows phytoplasma OY-M] gi|81565131|sp|Q6YR90|MNMA_ONYPE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|39721720|dbj|BAD04210.1| tRNA(5-methylaminomethyl-2-thiouridylate) [Onion yellows phytoplasma OY-M] Length = 378 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 107/381 (28%), Positives = 172/381 (45%), Gaps = 27/381 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS------CCAGQDVY 74 +VVV +SGGVDS+V A LLK+ GY V V ++ ++S +G+ C D Sbjct: 2 TKVVVGLSGGVDSAVAAFLLKKQGYLVEAVFMRNWDSNLNFDIQGNPTLNDICSQELDYK 61 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 D+ +V + + + + D+ E + V + F ++ TP P + CN +KF + Sbjct: 62 DSLKVSEQLGIKLHRVDFIEEYWQKVFMSFIKAFENNLTPNPDILCNNEIKFRAFIEYAT 121 Query: 135 -QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +L +A GHY D K + +D +DQ+YFL T +QL ++ FPLG Sbjct: 122 TKLAPQYIAMGHYANIIYETSSDQKLVPRLACAVDQNKDQTYFLSQLTTKQLQNILFPLG 181 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++ K+ VR +A E L A K DS ICF+ + +F + A +GDI L+G L Sbjct: 182 NLTKQEVRQIALENNLINATKKDSTGICFIGERNFFQFLSNYLP--AQKGDIKTLDGTFL 239 Query: 254 GRHNGIINYTIGQRRGLGVA---MGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLRE 307 H G++ YTIGQR+ LG+ +P FVV ++ + V L + + + Sbjct: 240 AHHKGVMYYTIGQRKNLGLGDVPSQKPWFVVGKHLPTNTLYVEQGSTHPYLYSDKALIGD 299 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACV 366 I W K+R Q V + + + + + + ++ V GQ C Sbjct: 300 IVW-------RGKKTNLHLQAKMRYRQPNQDVILTWLDQNNLEIHYPQTIKAVTPGQICA 352 Query: 367 FYTSDSNEARVLGGGIISGSK 387 FY + G G+I Sbjct: 353 FYDKNI----CCGAGVIKEVY 369 >gi|78185088|ref|YP_377523.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. CC9902] gi|123580788|sp|Q3AV73|MNMA_SYNS9 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|78169382|gb|ABB26479.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. CC9902] Length = 389 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 142/393 (36%), Positives = 207/393 (52%), Gaps = 33/393 (8%) Query: 2 VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61 ++EA L + P + RV V +SGGVDSS+ AALL G++V G+TL L + Sbjct: 6 TMTEAGEAALGRLRQWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMS----- 60 Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 KG+CC + + DA +C+ + + H+V D E F+ ++ Y G TPLPC CN Sbjct: 61 -GKGACC-AEGLVDAAGICEQLGIPHHVVDTRETFQKEIVQRLVDGYQDGITPLPCSQCN 118 Query: 122 RTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 R+VKF +L ++ +ATGHY R R + GD G R + R +D +DQSYFL+ Sbjct: 119 RSVKFGPMLEWAAQERNLPRIATGHYARIR-HGGDCG--RHQLLRGLDSRKDQSYFLYDL 175 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGI 239 Q+ L + FPLG++ K R A GL A+K +SQD+C G + Sbjct: 176 PQEALGRIVFPLGELTKADTRIEAGRHGLRTAEKPESQDLCLADHHGSMRAFLDTYLP-- 233 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE 299 +G+IV +G ++G H+GI ++TIGQR+GLGVA EPL VV LD +RV+V PR Sbjct: 234 PRQGEIVLKDGTVVGEHDGIEHFTIGQRKGLGVAWQEPLHVVKLDPAMNRVVVAPRAEAG 293 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR----NDD-------GV 348 H + INW+ D + V++R PV + +DD Sbjct: 294 RHEAVVGAINWVSI----DPPLQAMNLEVQVRYRSAPVTARLTPLPATDDDHQRQRPHRC 349 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 ++ F++ + +A GQA VFY+ D+ VLGGG Sbjct: 350 HLVFDEDQFSIAPGQAAVFYSDDT----VLGGG 378 >gi|87125503|ref|ZP_01081348.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. RS9917] gi|86166803|gb|EAQ68065.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. RS9917] Length = 583 Score = 394 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 137/394 (34%), Positives = 198/394 (50%), Gaps = 31/394 (7%) Query: 3 VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62 V+EA +L P + RV V +SGGVDSS+ AALL G+ V G+TL L + Sbjct: 194 VTEAGHQALANLRHWPGEHRVAVGLSGGVDSSLTAALLVEAGWQVEGLTLWLMS------ 247 Query: 63 RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122 KG+CC + + DA +CD + + H+V D+ F+ ++ Y G TPLPC CNR Sbjct: 248 GKGACC-AEGLVDAAGICDQLGIPHHVVDFRAHFKEQIVDFLVQGYGEGITPLPCSRCNR 306 Query: 123 TVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181 VKF +L + G + +ATGHY R R D + R D +DQSYFL+ Sbjct: 307 EVKFGPMLQWALDERGIERIATGHYARIRHGAQSD-NGCHQLLRGCDSHKDQSYFLYDLP 365 Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIA 240 Q+ L L FPLG++ K R A GL A K++SQD+C G + A Sbjct: 366 QEALGRLVFPLGELTKSDTRLEAARHGLRTAKKTESQDLCLADHHGSMRAFLDTYLA--P 423 Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300 +G+IV +G ++G H+GI ++TIGQR+GLGVA EPL VV LD +RV+V PR Sbjct: 424 RQGEIVLRDGTVVGEHDGIEHFTIGQRKGLGVAWSEPLHVVQLDGALNRVVVAPRRDAAR 483 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-----------DDGVY 349 + +NW+ + + + V++R V + Sbjct: 484 AGAVVGAVNWVSIPEPQHPI----EVEVQVRYRSGAVAARLTPLPAQEADAAADRPHRCR 539 Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 +DF + + + GQA VFY+ + R+LGGG+I Sbjct: 540 LDFAEPQFSITPGQAAVFYSGE----RLLGGGLI 569 >gi|308274462|emb|CBX31061.1| tRNA-specific 2-thiouridylase mnmA [uncultured Desulfobacterium sp.] Length = 354 Score = 394 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 122/366 (33%), Positives = 184/366 (50%), Gaps = 16/366 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 ++ +A+SGGVDS V A LLK GYDV G+ + K + S ++ ++ Sbjct: 4 KIAIALSGGVDSLVAAYLLKNQGYDVTGIH--FITGYEHGKVQDSGKNNPELQKITQLAK 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I ++ FD +F+ VI F +Y AG+TP PC+ CN+++KF +L +++G L Sbjct: 62 QIEINIEFFDCRTQFKQIVINYFTQTYKAGKTPNPCIICNQSIKFGVVLEFAKKIGCTFL 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY G DG + + D ++DQSYFL +Q+QL FPL K+ V Sbjct: 122 ATGHYAGK--MTGRDG--MFHLLKGADTKKDQSYFLSMLSQKQLSCAIFPLYGFTKKEVI 177 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 L+ E GL A + +SQDICF++ Y D + R +G IV +NG+ +G H GI Sbjct: 178 RLSEEKGLHPAVQKESQDICFIKDNDYADFLIRETGFSPNDGIIVDINGKRIGNHKGIHQ 237 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 +T+GQRRG+ EP +V+ +D +++ V+VG + L INW+ + Sbjct: 238 FTVGQRRGINCPAPEPYYVISIDADANSVVVGSKNDLLTKHCKAANINWIAKSYTTE--- 294 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 K +IR VP + ++FE + V GQ VFY D V+GG Sbjct: 295 --LKVCTRIRYRNKEVPSVLFPEPGNCATIEFESPQSAVTPGQCAVFYIGD----EVIGG 348 Query: 381 GIISGS 386 G I + Sbjct: 349 GFIENA 354 >gi|319949296|ref|ZP_08023374.1| tRNA-specific 2-thiouridylase MnmA [Dietzia cinnamea P4] gi|319437034|gb|EFV92076.1| tRNA-specific 2-thiouridylase MnmA [Dietzia cinnamea P4] Length = 366 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 145/360 (40%), Positives = 190/360 (52%), Gaps = 19/360 (5%) Query: 44 GYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVI 101 G++V+GV L L +S A+ R GS CC+ +D DARRV D + + YV+D+ ERFR VI Sbjct: 14 GHEVVGVHLAL-SSDPATLRTGSRGCCSREDAGDARRVADLLGIPFYVWDFAERFRADVI 72 Query: 102 VPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRR 161 F SYA GETP PC+ CN +KF LL LG D +ATGHY R DG RR Sbjct: 73 DDFVESYARGETPNPCLRCNERIKFEALLERGMALGFDAVATGHYARLSTEELPDGSRRP 132 Query: 162 IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDIC 221 ++ R +D +DQSY L T +QL FPLGD K VR A GL +A K DS DIC Sbjct: 133 VLRRAVDAAKDQSYVLGVLTPEQLAHSMFPLGDSLKSQVRAEAEAAGLPVATKPDSHDIC 192 Query: 222 FVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIINYTIGQRRGLGV----AMGE 276 F+ G + G +V + G LGRH+GI +TIGQR+GLGV A G Sbjct: 193 FIPSGDTRAFLGARIG--VRPGAVVDADTGDELGRHDGIHGFTIGQRKGLGVQGPAADGR 250 Query: 277 PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP 336 P +V +D +S V VG + L + WL D + C V+IR+ + Sbjct: 251 PRYVTAIDADSGTVTVGGADHLLSVAMTATSPYWLVDDDIRET-----DCHVQIRAHGEA 305 Query: 337 VPVFVQRNDDG----VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAV 392 P V+R DG + + ++ GVA GQA V Y S+ + RVLG G IS S+ + Sbjct: 306 TPAHVRRIGDGADATLEITLDEPVRGVAPGQAAVLYRSEPDGDRVLGSGTISASRPATEA 365 >gi|254880932|ref|ZP_05253642.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 4_3_47FAA] gi|294775009|ref|ZP_06740538.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides vulgatus PC510] gi|319639940|ref|ZP_07994667.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 3_1_40A] gi|254833725|gb|EET14034.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 4_3_47FAA] gi|294451053|gb|EFG19524.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides vulgatus PC510] gi|317388218|gb|EFV69070.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 3_1_40A] Length = 375 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 119/379 (31%), Positives = 187/379 (49%), Gaps = 26/379 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N +D RV+V MSGG+DSS +L+ GY+V+GVT++ ++ G DV +A Sbjct: 2 NNRDKRVLVGMSGGIDSSATCIMLQEQGYEVVGVTMRTWDVPSRFSTPGQ-DEPDDVLEA 60 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + + + + H+V D E F+ ++ F Y G TP PCV CN K L Q Sbjct: 61 RALAERLGIEHHVADVREEFKQIIVKHFIDEYMQGRTPNPCVLCNPLFKERILCEWADQT 120 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 ++TGHY R ++ K + + D +DQSYFL+ Q+ L FPLG Sbjct: 121 NCAHISTGHYCRL-----EERKGKLYIVAGDDQTKDQSYFLWKLPQEILQRFLFPLGTYT 175 Query: 197 KESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQI 252 K+ VR+ R+ G + A +S +ICF++ G Y + ++ I G V+ G Sbjct: 176 KQEVREYLRQKGFEAKARGGESMEICFIE-GDYRNFLRSQCPDIDTQVGPGWFVNSKGVK 234 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G+H G YTIGQR+GL +A+G P +V+ ++ + V++G E L+ + + + + Sbjct: 235 IGQHKGFPYYTIGQRKGLEIALGHPAYVLRINAEKNTVMLGDAEELKAEYMLVEDYH--- 291 Query: 313 DGLFEDAVVDGFKCF---VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 + D +C V+IR P+P V D+ + V F +A GQ+ VFY Sbjct: 292 ----ITEMQDLLQCKDLSVRIRYRSKPIPCQVLVLDEKQLLVRFLSEASAIAPGQSAVFY 347 Query: 369 TSDSNEARVLGGGIISGSK 387 RVLGG I+ + Sbjct: 348 EG----KRVLGGAFIASQR 362 >gi|212692631|ref|ZP_03300759.1| hypothetical protein BACDOR_02128 [Bacteroides dorei DSM 17855] gi|212664916|gb|EEB25488.1| hypothetical protein BACDOR_02128 [Bacteroides dorei DSM 17855] Length = 375 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 117/379 (30%), Positives = 187/379 (49%), Gaps = 26/379 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N +D RV+V MSGG+DSS +L+ GY+V+GVT++ ++ G DV +A Sbjct: 2 NNRDKRVLVGMSGGIDSSATCIMLQEQGYEVVGVTMRTWDIPSRFSTPGQ-DEPDDVLEA 60 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + + + + + H+V D + F+ ++ F Y G TP PCV CN K L Q Sbjct: 61 KALAERLGIEHHVADVRKEFKQIIVKHFIDEYMQGRTPNPCVLCNPLFKERILCEWADQT 120 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 ++TGHY R ++ K + + D +DQSYFL+ Q+ L FPLG Sbjct: 121 NCAHISTGHYCRL-----EERKGKLYIVAGDDQTKDQSYFLWKLPQEILQRFLFPLGTYT 175 Query: 197 KESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQI 252 K+ VR+ R+ G + A +S +ICF++ G Y + ++ I G V+ G Sbjct: 176 KQEVREYLRQKGFEAKARGGESMEICFIE-GDYRNFLRSQCPDIDTQVGPGWFVNSKGVK 234 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G+H G YTIGQR+GL +A+G P +V+ ++ + V++G E L+ + + + + Sbjct: 235 IGQHKGFPYYTIGQRKGLEIALGHPAYVLRINAEKNTVMLGDAEELKAEYMLVEDYH--- 291 Query: 313 DGLFEDAVVDGFKCF---VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 + D +C V+IR P+P V D+ + V F +A GQ+ VFY Sbjct: 292 ----ITEMQDLLQCKDLSVRIRYRSKPIPCQVLVLDEKQLLVRFLSEASAIAPGQSAVFY 347 Query: 369 TSDSNEARVLGGGIISGSK 387 RVLGG I+ + Sbjct: 348 EG----KRVLGGAFIASQR 362 >gi|113953824|ref|YP_729973.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. CC9311] gi|123327918|sp|Q0IC49|MNMA_SYNS3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|113881175|gb|ABI46133.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. CC9311] Length = 391 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 133/401 (33%), Positives = 202/401 (50%), Gaps = 34/401 (8%) Query: 1 MVVSEATRLNSLDLD---KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS 57 M S AT+ + L+ + P + RV V +SGGVDSS+ AAL+ G++V G+TL L + Sbjct: 7 MTTSTATQAGAEALERLRQWPGEHRVAVGLSGGVDSSLTAALMVEAGWEVEGLTLWLMS- 65 Query: 58 RKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117 KG+CC + + DA +C + V H+V D + F ++ Y AG TPLPC Sbjct: 66 -----GKGACC-AEGLVDAAGICQQLGVPHHVVDSRDTFVREIVQGLVDGYRAGITPLPC 119 Query: 118 VDCNRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYF 176 CNR+VKF +L+ ++ +ATGHY R RL D R + R +D +DQSYF Sbjct: 120 SKCNRSVKFGPMLAWAEQERNLPRIATGHYARIRL---DREDGRWKLLRGLDRRKDQSYF 176 Query: 177 LFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRI 235 L+ Q+ L + FPLG++ K R A GL ADK +SQD+C G + Sbjct: 177 LYDLPQEVLARVVFPLGELTKADTRLEAGRHGLRTADKPESQDLCLADHHGSMRAFLDAY 236 Query: 236 NAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR 295 +G+IV +G ++G+H+GI ++TIGQR+GLG+A EPL VV LD ++V+V R Sbjct: 237 IP--PRDGEIVLQDGTVVGQHDGIEHFTIGQRKGLGIAWSEPLHVVKLDAAMNQVVVATR 294 Query: 296 ESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-----------QRN 344 + +NW+ + + V++R +PV + + Sbjct: 295 AEAGRTGCEVGAMNWVSIAPP--PLDSPMEVEVQVRYRSEPVRAHLICIEATANDRAKER 352 Query: 345 DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385 + F++ + + GQ V Y + VLGGG+I Sbjct: 353 PHRCKLTFQEPQFSITPGQGAVLYDGEV----VLGGGLIDS 389 >gi|116072337|ref|ZP_01469604.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. BL107] gi|116064859|gb|EAU70618.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. BL107] Length = 389 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 138/393 (35%), Positives = 203/393 (51%), Gaps = 33/393 (8%) Query: 2 VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61 ++EA L + P + RV V +SGGVDSS+ AALL G++V G+TL L + Sbjct: 6 TMTEAGEAALTRLRQWPGEHRVAVGLSGGVDSSLTAALLVEAGWEVEGLTLWLMS----- 60 Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 KG+CC + + DA +C+ + + H+V D E F+ ++ Y G TPLPC CN Sbjct: 61 -GKGACC-AEGLVDAAGICEQLGIPHHVVDTRETFQKEIVQRLVDGYQDGITPLPCSQCN 118 Query: 122 RTVKFSDLLSVTR-QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 R+VKF +L + + +ATGHY R R + R + R +D +DQSYFL+ Sbjct: 119 RSVKFGPMLEWAKQERHLPRIATGHYARIRHGGD---RGRHQLLRGLDSRKDQSYFLYDL 175 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGI 239 Q+ L + FPLG++ K R A GL A+K +SQD+C G + Sbjct: 176 PQEALGRIVFPLGELTKADTRIEAGRHGLRTAEKPESQDLCLADHHGSMRAFLDTYLP-- 233 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE 299 +G+IV +G ++G H+GI ++TIGQR+GLGVA EPL VV LD +RV+V PR Sbjct: 234 PRQGEIVLKDGTVVGEHDGIEHFTIGQRKGLGVAWQEPLHVVKLDPAMNRVVVAPRAEAG 293 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR----NDD-------GV 348 + INW+ D + V++R PV + +DD Sbjct: 294 RQEAVVGAINWVSI----DPPLQAMNVDVQVRYRSAPVTARLTPLPATDDDHQRQRPHRC 349 Query: 349 YVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 ++ F++++ +A GQA VFY D+ VLGGG Sbjct: 350 HLVFDENQFSIAPGQAAVFYADDT----VLGGG 378 >gi|71894390|ref|YP_278498.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycoplasma synoviae 53] gi|123644146|sp|Q4A634|MNMA_MYCS5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71851178|gb|AAZ43787.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase [Mycoplasma synoviae 53] Length = 372 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 110/390 (28%), Positives = 185/390 (47%), Gaps = 31/390 (7%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-------CCAG 70 VVV +SGGVDSSV A LLK++ Y+VIG+ ++ ++S + G+ C Sbjct: 3 NNKKTVVVGLSGGVDSSVAAYLLKKN-YNVIGLFMRNWDSLINNDYLGNREINNDICPQE 61 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 D DA+ + +++ Y D+ + + + V F S Y G TP P + CN+ +KF Sbjct: 62 LDYKDAQEIARQLDIPLYRVDFVKEYWDYVFENFISEYKKGRTPNPDILCNKYIKFDLFA 121 Query: 131 SVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 +L D +ATGHY + + +G+ + R D +DQSYFL +++QL + Sbjct: 122 KHAFNELKTDYIATGHYAKMK-----NGE----LYRASDKNKDQSYFLSQLSKEQLKKVL 172 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 FPL ++ K+ +R +ARE L A K DS ICF+ + K+ ++ A +G+++ + Sbjct: 173 FPLENLTKDEIRKIAREQNLITAAKKDSTGICFIGERKFAKFLQNYIP--AKKGNVLDIT 230 Query: 250 G-QILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 +I+G H+G YTIGQR+GL + E +V + + + V P Sbjct: 231 NQKIVGEHSGCFYYTIGQRKGLNLGGNKESYYVCGKNVAENIIYVAPSS---RPEFLESN 287 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACV 366 + + K R Q+ V V+ ++ V V ++K++ + GQ V Sbjct: 288 SLLASNLNLNTNNFNKKNLSAKFRYRQEDSKVKVEFLENNFVKVYYDKAQ-AITPGQQVV 346 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396 FY + + +GG +I +D L Sbjct: 347 FYDGE----KCIGGAVIEEIYLNDKKLTYL 372 >gi|58039815|ref|YP_191779.1| tRNA-specific 2-thiouridylase MnmA [Gluconobacter oxydans 621H] gi|58002229|gb|AAW61123.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Gluconobacter oxydans 621H] Length = 355 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 176/368 (47%), Positives = 239/368 (64%), Gaps = 25/368 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSVVAALLKR G++VIG TLQLY+ +A + G+CCAG+D+ DAR V D + Sbjct: 1 MSGGVDSSVVAALLKRQGHEVIGATLQLYDHGQA-AKPGACCAGRDIMDARAVADRLGFP 59 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 HYV D E RFR++V+ FA +YA GETP+PCV CN+ VKF+DLL + R LG + +ATGHY Sbjct: 60 HYVIDAESRFRDSVVESFADAYARGETPVPCVACNQGVKFTDLLGMARDLGCEAMATGHY 119 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDLAR 205 +R +G M RP+D ERDQ++FLFATT+ QL LRFPLG+M K VR LA+ Sbjct: 120 VRRV-----EGPEGAEMHRPVDAERDQTWFLFATTKDQLDYLRFPLGEMPDKAHVRALAQ 174 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 E+GL+IA K DSQDICFV G Y ++V+++ + EG+IV +G++LGRH G+ YT+G Sbjct: 175 ELGLEIAAKPDSQDICFVPSGSYAELVEKLRPEVRGEGEIVDEDGRVLGRHEGVARYTVG 234 Query: 266 QRRGLG---VAMGEPLFVVYLDKNSSRVIVGPR----ESLEVHRIYLREINWLGDGLFED 318 Q + LG A GE V +D R++VGPR E+ + LR++NWL D Sbjct: 235 QSKRLGDIHTATGERQMVTRIDVPKRRIVVGPRVQVSEADSRRSVRLRDMNWL-----ID 289 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 A +G +C V+IR+ + V+ ++ G V+ ++ + A GQACV Y +RV Sbjct: 290 APAEGVRCGVQIRAREKLREALVKPLENGGALVELTEAAM-PAPGQACVLYDG----SRV 344 Query: 378 LGGGIISG 385 LGGG I+ Sbjct: 345 LGGGFITA 352 >gi|42523417|ref|NP_968797.1| tRNA-methyltransferase [Bdellovibrio bacteriovorus HD100] gi|39575623|emb|CAE79790.1| tRNA-methyltransferase [Bdellovibrio bacteriovorus HD100] Length = 351 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 139/364 (38%), Positives = 193/364 (53%), Gaps = 20/364 (5%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVYDARRVCDTIN 84 MSGGVDSS AALL GY+VIG T+Q+++ + G+CC+ DV DAR V D + Sbjct: 1 MSGGVDSSAAAALLVEQGYEVIGATMQVWDYSTCDIEEGNGTCCSSIDVDDARAVADRLG 60 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV + E +FR AVI PF +Y G+TPLPCV+CN +KF L+ R+L D +ATG Sbjct: 61 IPFYVINCEAKFRAAVIDPFLKAYLEGQTPLPCVNCNTYLKFDHLVKKMRELECDYIATG 120 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY + D K + + D +DQ+YFLF + + L FP+GDMKK VR+ + Sbjct: 121 HYAKIVY----DDKGKASIHTSTDDWKDQTYFLFTIDPELVPKLLFPVGDMKKPQVREYS 176 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINA---GIALEGDIVH-LNGQILGRHNGII 260 GL A K DSQ ICFV Y + +K + +G I GQ++ H GI Sbjct: 177 ESRGLVTARKKDSQGICFVGNQGYQNFIKDHVKSEILASKKGLIKRFPEGQVMASHEGIH 236 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 NYT GQ +GLG+ E LFV+ +D + + V VG + L + + + D D + Sbjct: 237 NYTYGQSKGLGMDYHEKLFVIKIDASDNTVWVGEEKHLFANEVD------VVDPKLLDEI 290 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 DG VKIR P V + G + F + + V GQA VFY +++GG Sbjct: 291 QDGEIMNVKIRYQHKGAPAQVIKTASGFKLKFTEPQRAVTPGQAAVFYRD----RQLVGG 346 Query: 381 GIIS 384 G I+ Sbjct: 347 GWIT 350 >gi|193212019|ref|YP_001997972.1| tRNA-specific 2-thiouridylase MnmA [Chlorobaculum parvum NCIB 8327] gi|193085496|gb|ACF10772.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobaculum parvum NCIB 8327] Length = 364 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 130/379 (34%), Positives = 193/379 (50%), Gaps = 23/379 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 V++ +SGGVDS+ A LL + GY V G+ +++ ++ + + + + D Sbjct: 4 KQHVIIGLSGGVDSAAAACLLIKQGYRVTGLNIRVLDTPEDTSTLA--PSAMRISD---- 57 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + + + +F V+ F Y AG TP PC+ CN+ +K+ L R LGAD Sbjct: 58 SEEFDFPVFTLNLSAKFARDVVGYFHDDYLAGRTPNPCMVCNKAIKWFGLFEAMRLLGAD 117 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ATGHY R+ G + + +D E+DQSYFL+ TQ +L FPLG K Sbjct: 118 LVATGHYARTERRDG-----VTRLLKGIDPEKDQSYFLWMLTQAELAKTLFPLGGYTKAE 172 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRH 256 VR+LAR + A+K +SQ+ICFV Y + R G+ G+IV +G+++G H Sbjct: 173 VRELARSFEVHAAEKKESQEICFVPHDDYCAYLTRAIPGLEERVAGGEIVDQSGKVIGHH 232 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G YTIGQRRGLGV+ GEP++V +D +R+ VG + LE + +NW G Sbjct: 233 RGYPFYTIGQRRGLGVSTGEPVYVTKIDAEHNRIRVGSKADLECRSLIATAMNWSGIA-- 290 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 F+ +IR V+ DD V F + + GVA GQA VFY D Sbjct: 291 --TPDAPFETEARIRYRDRQSACMVEPLGDDRARVRFHEPKQGVACGQAVVFYDGD---- 344 Query: 376 RVLGGGIISGSKRSDAVEE 394 VLGGGII+ +D+ Sbjct: 345 EVLGGGIIAEVNPADSATP 363 >gi|150003843|ref|YP_001298587.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides vulgatus ATCC 8482] gi|205810962|sp|A6KZV1|MNMA3_BACV8 RecName: Full=tRNA-specific 2-thiouridylase mnmA 3 gi|149932267|gb|ABR38965.1| putative tRNA methyltransferase [Bacteroides vulgatus ATCC 8482] Length = 375 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 118/379 (31%), Positives = 187/379 (49%), Gaps = 26/379 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N +D RV+V MSGG+DSS +L+ GY+V+GVT++ ++ G DV +A Sbjct: 2 NNRDKRVLVGMSGGIDSSATCIMLQEQGYEVVGVTMRTWDVPSRFSTPGQ-DEPDDVLEA 60 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + + + + H+V D + F+ ++ F Y G TP PCV CN K L Q Sbjct: 61 RALAERLGIEHHVADVRKEFKQIIVKHFIDEYMQGRTPNPCVLCNPLFKERILCEWADQT 120 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 ++TGHY R ++ K + + D +DQSYFL+ Q+ L FPLG Sbjct: 121 NCAHISTGHYCRL-----EERKGKLYIVAGDDQTKDQSYFLWKLPQEILQRFLFPLGTYT 175 Query: 197 KESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQI 252 K+ VR+ R+ G + A +S +ICF++ G Y + ++ I G V+ G Sbjct: 176 KQEVREYLRQKGFEAKARGGESMEICFIE-GDYRNFLRSQCPDIDTQVGPGWFVNSKGVK 234 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G+H G YTIGQR+GL +A+G P +V+ ++ + V++G E L+ + + + + Sbjct: 235 IGQHKGFPYYTIGQRKGLEIALGHPAYVLRINAEKNTVMLGDAEELKAEYMLVEDYH--- 291 Query: 313 DGLFEDAVVDGFKCF---VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 + D +C V+IR P+P V D+ + V F +A GQ+ VFY Sbjct: 292 ----ITEMQDLLQCKDLSVRIRYRSKPIPCQVLVLDEKQLLVRFLSEASAIAPGQSAVFY 347 Query: 369 TSDSNEARVLGGGIISGSK 387 RVLGG I+ + Sbjct: 348 EG----KRVLGGAFIASQR 362 >gi|225851037|ref|YP_002731271.1| tRNA-specific 2-thiouridylase MnmA [Persephonella marina EX-H1] gi|254811456|sp|C0QRH5|MNMA_PERMH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|225646565|gb|ACO04751.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Persephonella marina EX-H1] Length = 353 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 146/365 (40%), Positives = 199/365 (54%), Gaps = 15/365 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MRV V MSGGVDSSV A LLK GYDVIGVTL+L + ++ + CC+ QD+ DA+RV Sbjct: 1 MRVAVGMSGGVDSSVAALLLKEKGYDVIGVTLKLSSIVCSNDIQ-VCCSPQDIKDAKRVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGAD 139 + + HYV D+E+ FR VI F Y G+TP PC CNR VK L LGAD Sbjct: 60 SYLGIEHYVIDWEDIFREKVINYFVEEYKKGKTPNPCSVCNREVKTGRLAKFVNIVLGAD 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ATGHYI+ + D +++ R D+++DQSYF+ + L L FPL D+ KE Sbjct: 120 KFATGHYIK----IEDHPVYGKVIKRGSDIKKDQSYFMALLERDVLDLLIFPLSDLTKEE 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A + + ++ K +S +ICF + + N GDIVH++G+ +G+H G+ Sbjct: 176 VRKIAEDYKIPVSQKKESFEICFTAGKTPAEYLLENNLLAFESGDIVHIDGKTVGKHKGL 235 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YT+GQRRGLGV EPL+V+ D + V+VG RE L + + N+L E Sbjct: 236 PFYTVGQRRGLGVRWREPLYVIEKDAERNTVVVGEREKLLTDHVSSEDFNFL--VPVEKW 293 Query: 320 VVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 +G V+ R Q V + V + + FEK E A GQ Y D +L Sbjct: 294 KKEGL--SVQGRYRQKAVKIKDVSIEGNRLTAYFEKPEERFAKGQVLAVYDGDI----LL 347 Query: 379 GGGII 383 GGGII Sbjct: 348 GGGII 352 >gi|317472707|ref|ZP_07932022.1| tRNA methyl transferase [Anaerostipes sp. 3_2_56FAA] gi|316899884|gb|EFV21883.1| tRNA methyl transferase [Anaerostipes sp. 3_2_56FAA] Length = 301 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 122/301 (40%), Positives = 175/301 (58%), Gaps = 7/301 (2%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSCCAGQDVYDARRV 79 +VVV MSGGVDSSV A LLK GY+VIGVT+Q++ + G CC V DARRV Sbjct: 4 KVVVGMSGGVDSSVAAYLLKEQGYEVIGVTMQIWQDEEQELLEENGGCCGLSAVDDARRV 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +++ +YV ++++ F+ VI F Y G TP PC+ CNR VK+ LL + +GAD Sbjct: 64 AQALDIPYYVMNFKQDFKEHVIDYFIDEYLDGRTPNPCIACNRYVKWESLLKRSLDIGAD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R R + R E+DQ+Y L+ TQ QL P+G+ K+ Sbjct: 124 YIATGHYARIEKLS----NGRYALKRSATPEKDQTYALYNLTQNQLSKTLMPVGEYTKDE 179 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R++A ++ L +A K DSQDICFV G Y D ++ G+ V ++G ILG H GI Sbjct: 180 IREIAEKIHLPVAHKPDSQDICFV-DGSYGDFIEETTGQKIRPGNFVDMDGNILGTHKGI 238 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 + YT+GQRRGLG+++ +P +VV +DK + V++G E L +Y +N + ED Sbjct: 239 VCYTVGQRRGLGLSLKQPGYVVRIDKERNEVVIGSNEDLMTDTLYGDHVNLMSVSSIEDG 298 Query: 320 V 320 + Sbjct: 299 M 299 >gi|21674668|ref|NP_662733.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobium tepidum TLS] gi|81790728|sp|Q8KBD3|MNMA_CHLTE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|21647873|gb|AAM73075.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobium tepidum TLS] Length = 366 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 130/384 (33%), Positives = 195/384 (50%), Gaps = 27/384 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 V++ +SGGVDS+V A LL + GY V G+ +++ ++ + + A R Sbjct: 3 SPQHVIIGLSGGVDSAVAACLLIKQGYHVTGLNIRVLDTPEDT--------PTLAPSAMR 54 Query: 79 VCD--TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + D + + + +F V+ F Y AG TP PC+ CN+ +K+ L R L Sbjct: 55 ISDSEEFDFPVFTLNLSAKFARDVVGYFHDDYLAGRTPNPCMVCNKAIKWFGLFEAMRLL 114 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 AD++ATGHY R+ L + + +D E+DQSYFL+ TQ +L FPLG Sbjct: 115 RADLVATGHYARTELRDA-----VTRLLKGVDPEKDQSYFLWMLTQAELAKTLFPLGGYT 169 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQIL 253 K VR+LAR G+ A+K +SQ+ICFV Y + G+ G+IV G+++ Sbjct: 170 KAEVRELARSFGVHAAEKKESQEICFVPHDDYCAYLANAIPGLEARVAGGEIVDQAGKVI 229 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G H G YTIGQRRGLGV+ GEP++V +D +R+ VG + LE + +NW+G Sbjct: 230 GHHRGYPFYTIGQRRGLGVSTGEPVYVTEIDAEHNRIHVGSKADLECRSLIASGMNWIGI 289 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDS 372 F+ +IR ++ +D+ +V F + + GVA GQA VFY D Sbjct: 290 A----TPDKSFEAEARIRYRDRQSACMIEPMDDNRAWVSFREPKQGVACGQAVVFYDGD- 344 Query: 373 NEARVLGGGIISGSKRSDAVEESL 396 VLGGGII+ ++ L Sbjct: 345 ---EVLGGGIIAKVNPEAPPQKIL 365 >gi|57234425|ref|YP_181511.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dehalococcoides ethenogenes 195] gi|123618735|sp|Q3Z8D8|MNMA_DEHE1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|57224873|gb|AAW39930.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dehalococcoides ethenogenes 195] Length = 357 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 129/363 (35%), Positives = 178/363 (49%), Gaps = 20/363 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++VAMSGGVDSSV A LL GYDV GV+LQL + ++ G+ + + AR V Sbjct: 8 IMVAMSGGVDSSVAAMLLLEQGYDVAGVSLQL---KSNNEPYGNGYNLKLINRAREVAAA 64 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + HYV D + F VI F Y+ G TP PC+ CN VK LL A LA Sbjct: 65 LGIPHYVVDLSDIFSQRVIADFCQQYSQGRTPNPCIRCNYYVKIGALLEKIPDFNAGYLA 124 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R ++G + + D ++DQSYFL+ + L L FPLG K+ + Sbjct: 125 TGHYARV--LSDENGT---HLLKGADEKKDQSYFLYTLPPESLSRLIFPLGKRYKKDIIR 179 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA +M L + + +SQD+CF+ G Y + G I+ G+ILG H G+ Y Sbjct: 180 LADKMKLPV-SQKESQDVCFIPDGDYKSFLATRMGFT--PGKILDKTGKILGEHQGLPLY 236 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A E LFV ++ ++ ++V + L RI L W + D Sbjct: 237 TIGQRQGLGLASNEKLFVSDMNPEANTIMVASHDQLYTSRILLSNFIWRESRIPLDTPG- 295 Query: 323 GFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 VK+R P V + + D ++ GQA V Y D VLGGG Sbjct: 296 ---MIVKVRYKAAPAEVKKISQTGDFYLLELASPVWAATPGQAAVIYLGD----MVLGGG 348 Query: 382 IIS 384 II Sbjct: 349 IIE 351 >gi|108804192|ref|YP_644129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rubrobacter xylanophilus DSM 9941] gi|123177389|sp|Q1AWB1|MNMA_RUBXD RecName: Full=Bifunctional protein nifU/mnmA; Includes: RecName: Full=NifU-like protein; Includes: RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|108765435|gb|ABG04317.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rubrobacter xylanophilus DSM 9941] Length = 488 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 142/363 (39%), Positives = 196/363 (53%), Gaps = 23/363 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VV AMSGGVDS+V A LLK GY+V+ VT +L++ S+ SCC+ V AR Sbjct: 146 VVAAMSGGVDSAVTALLLKERGYEVVAVTFRLHDGEPGSR---SCCSPDTVLFARETAHG 202 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + H+ + E F V+ F SYAAG TP PCV CN VKF + +LG +A Sbjct: 203 LGIPHFTLNLRELFDRRVMRDFVGSYAAGRTPNPCVACNAHVKFHAAAFLADRLGLRHVA 262 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R + RP D +DQ+Y L+ + L FPLGD +K VR Sbjct: 263 TGHYARV--------GEGPCLERPEDGRKDQTYVLWPVPPRLLGRTIFPLGDYRKSEVRR 314 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 +A E GL +A +SQDICF+ G Y + G+IV G++LGRH G++++ Sbjct: 315 IAEERGLAVARTPESQDICFIPDGDYRS--FVRRRVRSEPGEIVDRQGRVLGRHAGVVDF 372 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 T+GQRRGLG++ PL+V + S +V+VG R LEV R+ +R NW D Sbjct: 373 TVGQRRGLGISAPTPLYVTEVRPRSRQVVVGSRRELEVRRMLVRGANWFLDPREA----- 427 Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGI 382 V++R + +PVP ++ G V + GVA GQ+ VFYT D A+V+GGGI Sbjct: 428 ---ALVQVRYNGEPVPCELEEGAGGWEVALLEPVFGVAPGQSAVFYTRD--GAKVVGGGI 482 Query: 383 ISG 385 I+ Sbjct: 483 IAR 485 >gi|309812162|ref|ZP_07705920.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dermacoccus sp. Ellin185] gi|308433849|gb|EFP57723.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dermacoccus sp. Ellin185] Length = 384 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 137/384 (35%), Positives = 196/384 (51%), Gaps = 21/384 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79 MRVV AMSGGVDS+V A+ + G+DV+GV L L S + CC +D DARRV Sbjct: 1 MRVVAAMSGGVDSAVAASRMLEAGHDVVGVHLALSQSAATLRESARGCCTIEDAGDARRV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + YV+D ERF+ V+ F + Y AG TP PC+ CN +KF+ LL LG D Sbjct: 61 ADRLGIPFYVWDMAERFKADVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALALGFD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + +G + + R +D+ +DQSY L +QL FPLGD K Sbjct: 121 AVATGHYAQIV-----EGPNGKELHRAVDMAKDQSYVLGVLDAEQLAHSFFPLGDTTKPQ 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R+ A G +A+K DS DICF+ G + + GDIV +G+++GRH G Sbjct: 176 IREEAAAKGFYVANKPDSHDICFIADGDTKAWLTKRLGE--KPGDIVDTDGEVVGRHEGA 233 Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 YT+GQRRGLG+ +VV + ++ V+VG + L V I W Sbjct: 234 YAYTVGQRRGLGLKVPRDDHAKRYVVDVQPKTNTVVVGTADLLGVDVIEGLHARW----- 288 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 V + ++R+ + P V +DD V V + GVA GQ+ V Y Sbjct: 289 PGPPPVGEVRLGAQLRAHGEEFPATVTADDDRVVVRLDARTRGVAPGQSVVLYEG----T 344 Query: 376 RVLGGGIISGSKRSDAVEESLLSV 399 RV+G I+ + R+ S+++V Sbjct: 345 RVVGSATITATSRAPRQSSSVVTV 368 >gi|265752582|ref|ZP_06088151.1| tRNA methyl transferase [Bacteroides sp. 3_1_33FAA] gi|263235768|gb|EEZ21263.1| tRNA methyl transferase [Bacteroides sp. 3_1_33FAA] Length = 375 Score = 392 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 117/379 (30%), Positives = 187/379 (49%), Gaps = 26/379 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N +D RV+V MSGG+DSS +L+ GY+V+GVT++ ++ G DV +A Sbjct: 2 NNRDKRVLVGMSGGIDSSATCIMLQEQGYEVVGVTMRTWDVPSRFSTPGQ-DEPDDVLEA 60 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + + + + + H+V D + F+ ++ F Y G TP PCV CN K L Q Sbjct: 61 KALAERLGIEHHVADVRKEFKQIIVKHFIDEYMQGRTPNPCVLCNPLFKERILCEWADQT 120 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 ++TGHY R ++ K + + D +DQSYFL+ Q+ L FPLG Sbjct: 121 NCAHISTGHYCRL-----EERKGKLYIVAGDDQTKDQSYFLWKLPQEILQRFLFPLGTYT 175 Query: 197 KESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQI 252 K+ VR+ R+ G + A +S +ICF++ G Y + ++ I G V+ G Sbjct: 176 KQEVREYLRQKGFEAKARGGESMEICFIE-GDYRNFLRSQCPDIDTQVGPGWFVNSKGVK 234 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G+H G YTIGQR+GL +A+G P +V+ ++ + V++G E L+ + + + + Sbjct: 235 IGQHKGFPYYTIGQRKGLEIALGHPAYVLRINAEKNTVMLGDAEELKAEYMLVEDYH--- 291 Query: 313 DGLFEDAVVDGFKCF---VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 + D +C V+IR P+P V D+ + V F +A GQ+ VFY Sbjct: 292 ----ITEMQDLLQCKDLSVRIRYRSKPIPCQVLVLDEKQLLVRFLSEASAIAPGQSAVFY 347 Query: 369 TSDSNEARVLGGGIISGSK 387 RVLGG I+ + Sbjct: 348 EG----KRVLGGAFIASQR 362 >gi|183981704|ref|YP_001849995.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase TrmU [Mycobacterium marinum M] gi|183175030|gb|ACC40140.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase TrmU [Mycobacterium marinum M] Length = 357 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 134/365 (36%), Positives = 185/365 (50%), Gaps = 20/365 (5%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRVCDTINV 85 MSGGVDSSV AA + G+DV+GV L L + A + CC+ +D DARRV D + + Sbjct: 1 MSGGVDSSVAAARMVDAGHDVVGVHLALSTAPGALRTGSRGCCSKEDASDARRVADVLGI 60 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145 YV+D+ ERF+ VI F SSYA GETP PC+ CN+ +KFS L + LG DV+ TGH Sbjct: 61 PFYVWDFAERFKEDVIDDFVSSYARGETPNPCIRCNQRIKFSALYAKALALGFDVVVTGH 120 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y R + R +D ++DQSY L T +QL FP+GD K +R+ A Sbjct: 121 YARLSEG---------RLRRAVDQDKDQSYVLAVLTAEQLRHAMFPIGDTPKPQIREEAS 171 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 GL +ADK DS DICF+ G + G +V G +L H+G+ +TIG Sbjct: 172 RRGLAVADKPDSHDICFIPSGNTQTFLGERIG--VRRGTVVDAAGAVLATHDGVHGFTIG 229 Query: 266 QRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 QR+GLG+ G P +V +D + V VG L+VH + R + A Sbjct: 230 QRKGLGIPGPGPDGRPRYVTAIDAETGTVRVGDVADLQVHALTGRAPIFTAGT----APT 285 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 +C V++R+ + + D + V GVA GQ V Y D + VLG Sbjct: 286 GPLECAVQVRAHGETTSAVAELVGDELSVRLHSPLRGVARGQTLVLYRPDPDGDEVLGSA 345 Query: 382 IISGS 386 I+ + Sbjct: 346 TITAT 350 >gi|270308092|ref|YP_003330150.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dehalococcoides sp. VS] gi|270153984|gb|ACZ61822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dehalococcoides sp. VS] Length = 357 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 131/363 (36%), Positives = 176/363 (48%), Gaps = 20/363 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++VAMSGGVDSSV A LL GYDV GV+LQL + ++ G+ + + AR V Sbjct: 8 IMVAMSGGVDSSVAAMLLLEQGYDVAGVSLQL---KSNNEPYGNGYNLKLINRAREVAAA 64 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + HYV D + F VI F Y+ G TP PC+ CN VK LL A LA Sbjct: 65 LGIPHYVVDLSDIFSQRVIADFCQQYSQGRTPNPCIRCNYYVKIGALLDKIPDFNAGYLA 124 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R V DG + + D ++DQSYFL+ L L FPLG K+ + Sbjct: 125 TGHYAR----VLSDGNG-THLLKGADEKKDQSYFLYTLPPASLSRLMFPLGKRYKKDIIR 179 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA +M L + + +SQD+CF+ G Y + G I+ G+ILG H G+ Y Sbjct: 180 LAAKMKLPV-SQKESQDVCFIPDGDYKSFLSTRMGFT--PGKILDKTGKILGEHQGLPLY 236 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GLG+A E LFV ++ ++ + V + L RI L W + D Sbjct: 237 TIGQRQGLGLASNEKLFVSDMNPEANTITVASHDQLYTSRILLSNFIWRESSISIDTPG- 295 Query: 323 GFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 VK+R P V + + D ++ GQA V Y D VLGGG Sbjct: 296 ---MIVKVRYKAAPAEVKKISQTGDFHLLELASPVWAATPGQAAVIYLGD----MVLGGG 348 Query: 382 IIS 384 II Sbjct: 349 IIE 351 >gi|87301094|ref|ZP_01083935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. WH 5701] gi|87284062|gb|EAQ76015.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. WH 5701] Length = 376 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 140/393 (35%), Positives = 196/393 (49%), Gaps = 30/393 (7%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + P + RV V +SGGVDSS+ AALL G+ V G+TL L + KG+CC + + Sbjct: 1 MRAWPGEHRVAVGLSGGVDSSLTAALLVAAGWQVEGLTLWLMS------GKGACC-AEGL 53 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA +C+ + V H+V D ERFR ++ Y G TPLPC CNR VKF+ +L Sbjct: 54 VDAAGLCEQLGVPHHVVDSRERFREQIVEFLVQGYEGGVTPLPCSRCNREVKFTPMLEWA 113 Query: 134 R-QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 +LG +ATGHY R RL R + R +D+ +DQSYFL+ Q L L FPL Sbjct: 114 EAELGISRIATGHYARVRLADAGARAGRHQLLRGLDVHKDQSYFLYDLPQAVLARLVFPL 173 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQ 251 G++ K R A +GL A K +SQD+C G + +G IV +G Sbjct: 174 GELTKPDTRLEAEALGLRTARKPESQDLCLADHHGSMKAFLDAYLP--PRQGQIVLADGT 231 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 ++G H+GI ++TIGQR+GLGVA EPL VV LD +RV+V PR + INW+ Sbjct: 232 VVGEHDGIEHFTIGQRKGLGVAWSEPLHVVRLDGAMNRVVVAPRAEAARSGCVVGAINWI 291 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-----------VYVDFEKSEVGVA 360 E + V++R PV + + ++F + + + Sbjct: 292 SIPPPE----APLELEVQVRYRSAPVAAQLIPLEPTAADAAAARPHRARLNFHEEQFSIT 347 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVE 393 GQA VFY + VLGGG+I A + Sbjct: 348 PGQAAVFYAGEV----VLGGGLIQRHPPDPAHQ 376 >gi|161350046|ref|NP_894177.2| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str. MIT 9313] gi|205822220|sp|Q7TTR0|MNMA_PROMM RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 409 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 136/391 (34%), Positives = 197/391 (50%), Gaps = 38/391 (9%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 L P + RV V +SGGVDSS+ AALL G+ V G+TL L + KG+CC+ + Sbjct: 28 LQCWPGEQRVAVGLSGGVDSSLSAALLVEAGWQVEGLTLWLMS------GKGACCS-DGL 80 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA +C+ + + H+V D F+ ++ Y G TPLPC CNR+VKF+++LS Sbjct: 81 IDAAGICEQLKIPHHVVDSRATFQAEIVDQLVQGYQQGVTPLPCSRCNRSVKFAEMLSWA 140 Query: 134 R-QLGADVLATGHYIRSRLYVGD--------DGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 + +L +ATGHY R R D R + R +D +DQSYFL+ +Q Sbjct: 141 KKELQLHRVATGHYARIRHREDPEPQQALPGDSIGRHQLLRGLDQNKDQSYFLYDLSQDV 200 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEG 243 L + FPLG++ K R A GL A K +SQD+C G + A +G Sbjct: 201 LAKVIFPLGELTKAETRQEAERYGLRTAKKEESQDLCLADHYGSMKAFLDNYLP--ARQG 258 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 +IV +G+++G H+GI ++TIGQR+GLGVA EPL VV LD ++RVIV PR Sbjct: 259 EIVLQDGKVVGEHDGIEHFTIGQRKGLGVAWREPLHVVQLDAAANRVIVAPRAEAGRDNC 318 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-----------DGVYVDF 352 + +NW+ V++R PV + + + F Sbjct: 319 VVGAVNWISMA----PPSTTINVEVQVRYRSGPVAAQLTPIEATAEDIAADRPHRCRLTF 374 Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGII 383 + + + GQA VFY +D+ VLGGG+I Sbjct: 375 NEKQFSITPGQAAVFYAADT----VLGGGLI 401 >gi|242042037|ref|XP_002468413.1| hypothetical protein SORBIDRAFT_01g045520 [Sorghum bicolor] gi|241922267|gb|EER95411.1| hypothetical protein SORBIDRAFT_01g045520 [Sorghum bicolor] Length = 489 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 122/373 (32%), Positives = 180/373 (48%), Gaps = 20/373 (5%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +RV V +SGGVDSSV LL G+ L+++ C +D+ A+ V Sbjct: 77 PLRVAVLVSGGVDSSVALRLLHAAGHHCTAFYLKIWFQEDFRNFWSECPWDEDLKYAQAV 136 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD I+V V + + N V+ + Y G TP P V CN +KF L LG D Sbjct: 137 CDKIDVPLEVVHLSDEYWNYVVSHMINEYRCGRTPNPDVLCNTRIKFGAFLEAIENLGFD 196 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +A+GHY ++ + I+ D +DQ+YFL +Q QL L FPLG + K+ Sbjct: 197 YIASGHYAHVVHPSTENTEAPSILQLSKDKVKDQTYFLSHLSQPQLRRLLFPLGCITKDE 256 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258 VR LA +MGL + DSQ ICF+ + K+ + V+R +EG I+ +G LG+H G Sbjct: 257 VRRLATQMGLPNQGRKDSQGICFLGKVKFSEFVERHIGE--MEGIILEAESGDYLGKHRG 314 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHR--IYLREINWLGDGL 315 YTIGQR+GL + G P +VV D ++ V V SL+ R + +NW Sbjct: 315 FWFYTIGQRQGLRLPGG-PWYVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFDSS- 372 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFV-----QRNDDGVYVDFEKSEVGVASGQACVFYTS 370 + + K+R S + + + N+D + V + + G+A+GQ FY Sbjct: 373 ---GPGNNEQLKCKVRHSPEFHDCTLIKEHTEENEDALVVHLSEDDQGLAAGQFAAFY-- 427 Query: 371 DSNEARVLGGGII 383 +E LG GII Sbjct: 428 --SEHSCLGSGII 438 >gi|189501011|ref|YP_001960481.1| tRNA-specific 2-thiouridylase MnmA [Chlorobium phaeobacteroides BS1] gi|229486338|sp|B3EN11|MNMA_CHLPB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|189496452|gb|ACE05000.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobium phaeobacteroides BS1] Length = 359 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 123/370 (33%), Positives = 194/370 (52%), Gaps = 25/370 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS-RKASKRKGSCCAGQDVYDARRVC 80 V+V +SGGVDS+V A +L +GY V G+ +++ + + + S D + R Sbjct: 7 HVIVGISGGVDSAVAACILIENGYRVTGLHIKVLDHSDDSLHLEKSPLIISDRKEFR--- 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + FR VI F Y +G TP PC+ CN+ +K+ LL L A + Sbjct: 64 ----FPVFSLNLSGSFRRDVIDYFLQDYLSGRTPNPCMVCNKLIKWKGLLKGADLLQATL 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R D G+ + + + D ++DQSYFL+ + ++L P+G++ K+ V Sbjct: 120 VATGHYARI-----DCGREKCRLLKGTDSQKDQSYFLWMLSSEELSKTLLPVGNLTKQEV 174 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRHN 257 R+LAR G+ A+K +SQ+ICFV Y +VVK G+A + G+I+ G+++G H Sbjct: 175 RELARRFGVRAAEKKESQEICFVPDNDYREVVKSSRPGLAEKLTGGEIIDTEGKVIGHHA 234 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 G YTIGQR+GLG++ EPL+V LD +R+ VG + L+ ++ ++NW G E Sbjct: 235 GYPFYTIGQRKGLGISSPEPLYVNRLDPEKNRIRVGGKAMLQCRKLIAGQMNWTGISPPE 294 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + +IR + + + V F+K + V GQA VFY D Sbjct: 295 TST----RAAARIRYRDTGEACTIVPVEKERFEVIFDKPKQSVTPGQAVVFYRDD----E 346 Query: 377 VLGGGIISGS 386 V+GGGII + Sbjct: 347 VIGGGIIVEA 356 >gi|188997646|ref|YP_001931897.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfurihydrogenibium sp. YO3AOP1] gi|188932713|gb|ACD67343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfurihydrogenibium sp. YO3AOP1] Length = 352 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 131/367 (35%), Positives = 208/367 (56%), Gaps = 17/367 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 ++VV +SGGVDSS A LLK+ GY+V+G++L+ + CC+ +D+ DA++V Sbjct: 2 KKIVVGLSGGVDSSTAAFLLKKQGYEVVGISLKFTDIDSCELDTQVCCSDKDILDAKKVA 61 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + HYV ++++ F VI F Y +G TP PC CN+ VK + LG D Sbjct: 62 EFLEIPHYVINWKDIFEKKVINYFIEVYQSGLTPNPCSICNKEVKTGLFAKYIKSLGFDY 121 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHYIR+ + G +++ R +D +DQSYF+ ++ + L FPLG++ KE V Sbjct: 122 LATGHYIRTDIQDG-----IKVLKRGIDKNKDQSYFMALVEKEVVDTLTFPLGNLTKEEV 176 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A+E + ++ K +S +ICF + + K +N EG+IVH++G++LGRH GI Sbjct: 177 RKIAQENRIPVSQKEESFEICFTKGKSPEEYFKTLN-IKTNEGEIVHISGKVLGRHKGIE 235 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +YTIGQRRGL +A EPL+V+ D ++++VG ++ L +++ ++ N+L + Sbjct: 236 SYTIGQRRGLNIAWKEPLYVIEKDALKNKIVVGEKDYLLTNKVVAKDFNFLVPFEKWKKI 295 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 V+ R Q P+ D + + V FE+ A GQ Y D+ +LG Sbjct: 296 ------EVQGRYKQKPIKAKEYHLDRENLTVIFEEKVPKFAPGQILAVYDGDT----LLG 345 Query: 380 GGIISGS 386 GGIIS S Sbjct: 346 GGIISRS 352 >gi|182415638|ref|YP_001820704.1| tRNA-specific 2-thiouridylase MnmA [Opitutus terrae PB90-1] gi|205816897|sp|B1ZZ32|MNMA_OPITP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|177842852|gb|ACB77104.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Opitutus terrae PB90-1] Length = 378 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 129/388 (33%), Positives = 189/388 (48%), Gaps = 36/388 (9%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 P +++VAMSGGVDSSV A LLK+ GYDV+G ++ + + G C QD+ DAR Sbjct: 2 PGAEKILVAMSGGVDSSVAALLLKQQGYDVVGAYMKNWINEDQV--IGHCPWQQDIEDAR 59 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 RV I + V + +R V+ YA G TP P + CNR VKF S + G Sbjct: 60 RVATQIGIEFRVVNLMREYRERVVAYLLDGYARGLTPNPDIMCNREVKFGVFRSWAKDHG 119 Query: 138 ADVLATGHYIRSRLYVGD------------DGK--RRRIMCRPMDLERDQSYFLFATTQQ 183 +ATGHY + D DG + D +DQSYFL +Q+ Sbjct: 120 FAAIATGHYAQRVEVKPDLVTPAVLGGLNADGTPASTFALLEGADKNKDQSYFLALLSQE 179 Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243 QL D RFP+G + K +R +ARE GL ADK DSQ ICF+ + K D ++ G Sbjct: 180 QLRDARFPIGHLPKPELRRIAREAGLATADKKDSQGICFIGEVKMQDFLRAYVPDA--PG 237 Query: 244 DIVH-LNGQILGRHNGIINYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVG----PR 295 IV +G+ LG+H G+ YT+GQR+G+G+ E VV ++V Sbjct: 238 PIVRATDGRELGQHRGLHFYTLGQRKGIGIPSNTDHEAYVVVGKRAADRALLVAFDHPDA 297 Query: 296 ESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEK 354 L + + ++W+G + ++G ++R VP+ FV ++ + F Sbjct: 298 PGLFQREVRVHALSWIGKPVTTARALEG-----RVRYRDPRVPLEFVPESETTALIRFAA 352 Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGI 382 + G+A+GQ FY + R+LGGG+ Sbjct: 353 PQRGLAAGQILAFYDGE----RLLGGGV 376 >gi|148242801|ref|YP_001227958.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. RCC307] gi|205828978|sp|A5GUP6|MNMA_SYNR3 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|147851111|emb|CAK28605.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. RCC307] Length = 383 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 130/385 (33%), Positives = 190/385 (49%), Gaps = 33/385 (8%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 L P + RV V +SGGVDSS+ AALL+ + V G+TL L + KG+CC + + Sbjct: 19 LQAWPGEHRVAVGLSGGVDSSLTAALLRDAQWQVEGLTLWLMS------GKGACC-AEGL 71 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA +C+ + + H+V D + F+ ++ Y G TPLPC CNR VKF +L Sbjct: 72 VDAAGLCEELEIPHHVVDSRDTFQQEIVQFLVQGYGDGITPLPCSRCNRAVKFGPMLDWA 131 Query: 134 -RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 ++ G +ATGHY R R R + R +D +DQSYFL+ Q L L FPL Sbjct: 132 EKERGITRVATGHYARLRPNAD---GGRTQLLRGLDARKDQSYFLYDLPQAVLQRLIFPL 188 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQ 251 G++ K R A +GL A+K +SQD+C G + G+IV +G+ Sbjct: 189 GELTKPDTRAEAARLGLRTAEKPESQDLCLADHHGSMKAFLDAYLPE--RPGEIVLTDGR 246 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 ++G+H+GI ++TIGQR+GLGVA EPL VV LD ++V+V PR + +NW+ Sbjct: 247 VVGQHDGIEHFTIGQRKGLGVAWSEPLHVVRLDGAMNQVVVAPRAEAARGDAVVGAVNWV 306 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-----------DDGVYVDFEKSEVGVA 360 D + V++R P + +DF + + + Sbjct: 307 SI----DPPAEPLDVEVQVRYRSAPERARLTPLPPVESDHQAERPHRCRLDFAEEQFSIT 362 Query: 361 SGQACVFYTSDSNEARVLGGGIISG 385 GQA VFY + LGGG+I Sbjct: 363 PGQAAVFYDGEV----CLGGGLIQA 383 >gi|213964680|ref|ZP_03392880.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium amycolatum SK46] gi|213952873|gb|EEB64255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium amycolatum SK46] Length = 379 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 138/386 (35%), Positives = 204/386 (52%), Gaps = 26/386 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRV 79 MRV+ AMSGGVDSSV AA G++V+GV L L ++ CC+ +D DARRV Sbjct: 1 MRVLAAMSGGVDSSVAAARALAAGHEVVGVHLALSKDPQSVRAGSRGCCSLEDSGDARRV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + + YV+D+ ERF+ V+ F SY GETP PC+ CN +KF+ LL LG D Sbjct: 61 CDELGIPFYVWDFSERFKEEVMDDFYDSYERGETPNPCLRCNERIKFAALLERGLALGFD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 + TGHY +GDDG ++ R D+++DQSY L ++QL FP+GD +K Sbjct: 121 AVVTGHYA----LLGDDG----LLRRGRDMKKDQSYVLGVLDREQLSHSLFPVGDTEKPE 172 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258 +R+ AR+MGL A+K DS DICF+ G + G IV G + H+G Sbjct: 173 IREEARDMGLGTANKPDSYDICFIPDGNTQAFLGAKIGR--RPGLIVDKETGDTVAEHDG 230 Query: 259 IINYTIGQRRGLG----VAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 + +TIGQR+G+G +A G+P +V +D +++ V +G + L V+ + WL + Sbjct: 231 VYGFTIGQRKGIGLPGPMADGKPRYVTGIDADTATVTIGTADDLNVNVLQADRAIWLANP 290 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQ----RNDD------GVYVDFEKSEVGVASGQA 364 + K V++R+ P+ ++ +DD + + GVA GQA Sbjct: 291 DEVLVASEAGKLQVQVRAHGRPIDCRIEVLAGPDDDVTGRGGTFRLHLSEPLRGVAPGQA 350 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSD 390 V Y +D+ VLG G I + R + Sbjct: 351 AVLYHTDTAGDYVLGSGTIVSTAREE 376 >gi|255011782|ref|ZP_05283908.1| putative tRNA methyltransferase [Bacteroides fragilis 3_1_12] Length = 364 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 119/379 (31%), Positives = 191/379 (50%), Gaps = 33/379 (8%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++ + RV+V MSGG+DS+ +L+ GY+++GVT++++ Sbjct: 1 MNMKESNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP-------------- 46 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DAR + + + HYV D F++ ++ F Y G TP PCV CN KF L+ Sbjct: 47 QDARELAVRMGIEHYVADERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWA 106 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +LG D +ATGHY R ++ + D ++DQSYFL+ Q L FPLG Sbjct: 107 DKLGCDWIATGHYSRL-----EERNGYIYIVAGDDEKKDQSYFLWRLGQDVLRRCIFPLG 161 Query: 194 DMKKESVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLN 249 + K++VRD RE G + + +S ++CF+ +G Y D ++ + G V Sbjct: 162 NYTKQTVRDYLREKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDAEIGPGWFVSSE 220 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 G LG+H G YTIGQR+GL +A+G+P +V+ ++ + V++G E L+ + + N Sbjct: 221 GVKLGQHRGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKAGYMVAEQDN 280 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 + ED + + V+IR P+P V+R +DG + V F +A GQ+ VFY Sbjct: 281 IVD----EDELFSCPELAVRIRYRSRPIPCRVKRLEDGRLLVRFLAEASAIAPGQSAVFY 336 Query: 369 TSDSNEARVLGGGIISGSK 387 RV+GG I+ + Sbjct: 337 DG----RRVIGGAFIASQR 351 >gi|291229392|ref|XP_002734665.1| PREDICTED: tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase-like [Saccoglossus kowalevskii] Length = 390 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 107/392 (27%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + +V MSGGVDSSV A LLKR G+ V G+ ++ ++S S G C D Sbjct: 1 MAGRLLKHHIVCGMSGGVDSSVAALLLKRQGFRVTGLFMKNWDSLDES---GICSTEGDY 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ VCD +++ + + + + + V F Y G TP P + CN+ +KF L+ Sbjct: 58 NDAQFVCDKLDIPLHQVSFVKEYWHDVFSNFLKEYENGTTPNPDILCNKLIKFDKFLNYA 117 Query: 134 RQ-LGADVLATGHYIRSR------LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 + A LATGHY R+ K + + +D +DQ++FL +Q L Sbjct: 118 MKNFDAHALATGHYARTSGGYSVLTNPESVKKNGIALLKGLDANKDQTFFLSQISQNALQ 177 Query: 187 DLRFPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FPLG++ K+ V+++A G + I K +S ICF+ K+ ++ + G+ Sbjct: 178 KTIFPLGELMKKEVKEIALRAGFERIVKKKESMGICFIGTRKFQSFIQEYLETAS--GNF 235 Query: 246 VHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVH 301 V + +G I+G H G YT+GQR +G + F+ + D + + V P +L Sbjct: 236 VSVEDGTIMGDHKGCHLYTVGQRSNIG-GQSQAWFICHKDSTTQTIYVAPGSHHPALFYQ 294 Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRS--SQDPVPVFVQRND--DGVYVDFEKSEV 357 + + W+ + F+C + + V V ND G+ + ++ Sbjct: 295 TMITEPLYWIRQSPPKLLEKKMFECDFRFQHVNVHPLVRCTVTVNDKQQGI-ISLQQPLR 353 Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGSKRS 389 + +GQ V Y D LGG I + S Sbjct: 354 ALTAGQFAVLYDED----ECLGGARIMKTGPS 381 >gi|298480213|ref|ZP_06998411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. D22] gi|298273494|gb|EFI15057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. D22] Length = 361 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 116/374 (31%), Positives = 185/374 (49%), Gaps = 33/374 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV+V MSGG+DS+ +L+ GY+++GVT++++ DAR Sbjct: 4 RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + HYV D F+ ++ F Y G TP PCV CN KF L +L Sbjct: 50 LAERMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R ++ + D ++DQSYFL+ Q L FPLGD K Sbjct: 110 AWVATGHYSRL-----EEKNGNIYIVAGDDDKKDQSYFLWRLGQDVLKRCIFPLGDYTKV 164 Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILG 254 VR+ E G + + +S ++CF+ +G Y D ++ + E G V+ G LG Sbjct: 165 KVREYLAEKGYETKSKEGESMEVCFI-KGDYRDFLREQCPELDSEIGSGWFVNSEGVKLG 223 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +H G YTIGQR+GL +A+G+P +V+ ++ + V++G + LE + + Sbjct: 224 KHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLETEYMLAEQ----DKI 279 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + E + V+IR P+P V+R +DG + V F ++ +A GQ+ VFY Sbjct: 280 VDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAIAPGQSAVFYDG--- 336 Query: 374 EARVLGGGIISGSK 387 RVLGG I+ + Sbjct: 337 -RRVLGGAFIASQR 349 >gi|73748589|ref|YP_307828.1| tRNA-specific 2-thiouridylase MnmA [Dehalococcoides sp. CBDB1] gi|289432615|ref|YP_003462488.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dehalococcoides sp. GT] gi|123619640|sp|Q3ZXD7|MNMA_DEHSC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205814533|sp|A5FR85|MNMA_DEHSB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|73660305|emb|CAI82912.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dehalococcoides sp. CBDB1] gi|288946335|gb|ADC74032.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dehalococcoides sp. GT] Length = 357 Score = 391 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 131/364 (35%), Positives = 183/364 (50%), Gaps = 20/364 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V+VAMSGGVDSSV A LL GY+V GV+LQL + ++ G+ + + AR V Sbjct: 8 VMVAMSGGVDSSVTAMLLLEQGYNVAGVSLQL---KSNNEPYGNGYNLKLINRAREVAAA 64 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 +N+ HYV D + F VI F Y+ G TP PC+ CN VK LL+ + AD LA Sbjct: 65 LNIPHYVVDLSDIFSQRVIADFCQQYSQGRTPNPCIRCNYYVKIGALLNKIQDFKADYLA 124 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R + ++G + R D ++DQSYFL+ + L L FPLG K+ + Sbjct: 125 TGHYAR--IVSDENGT---HLLRGADGKKDQSYFLYTLPPESLSRLMFPLGQKYKKDIVR 179 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA M L + + +SQD+CF+ G Y + G I+ G+ILG H G+ Y Sbjct: 180 LATNMKLPV-SQKESQDVCFIPDGDYKSFLATRMGFT--PGKILDTTGKILGEHQGLPLY 236 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 T+GQR+GLG+A E LFV ++ +++ + V + L RI L W +D Sbjct: 237 TVGQRQGLGLASNEKLFVSDMNADANTITVAGHDQLYTSRILLSNFIW----RESGIPLD 292 Query: 323 GFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 VK+R P V + ++ D ++ GQA V Y D VLGGG Sbjct: 293 TSGMIVKVRYKAAPAEVKKISQSGDFYILELASPVWAATPGQAAVIYLDD----MVLGGG 348 Query: 382 IISG 385 II Sbjct: 349 IIES 352 >gi|147669349|ref|YP_001214167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dehalococcoides sp. BAV1] gi|146270297|gb|ABQ17289.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dehalococcoides sp. BAV1] Length = 361 Score = 391 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 131/364 (35%), Positives = 183/364 (50%), Gaps = 20/364 (5%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V+VAMSGGVDSSV A LL GY+V GV+LQL + ++ G+ + + AR V Sbjct: 12 VMVAMSGGVDSSVTAMLLLEQGYNVAGVSLQL---KSNNEPYGNGYNLKLINRAREVAAA 68 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 +N+ HYV D + F VI F Y+ G TP PC+ CN VK LL+ + AD LA Sbjct: 69 LNIPHYVVDLSDIFSQRVIADFCQQYSQGRTPNPCIRCNYYVKIGALLNKIQDFKADYLA 128 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 TGHY R + ++G + R D ++DQSYFL+ + L L FPLG K+ + Sbjct: 129 TGHYAR--IVSDENGT---HLLRGADGKKDQSYFLYTLPPESLSRLMFPLGQKYKKDIVR 183 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 LA M L + + +SQD+CF+ G Y + G I+ G+ILG H G+ Y Sbjct: 184 LATNMKLPV-SQKESQDVCFIPDGDYKSFLATRMGFT--PGKILDTTGKILGEHQGLPLY 240 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 T+GQR+GLG+A E LFV ++ +++ + V + L RI L W +D Sbjct: 241 TVGQRQGLGLASNEKLFVSDMNADANTITVAGHDQLYTSRILLSNFIW----RESGIPLD 296 Query: 323 GFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 VK+R P V + ++ D ++ GQA V Y D VLGGG Sbjct: 297 TSGMIVKVRYKAAPAEVKKISQSGDFYILELASPVWAATPGQAAVIYLDD----MVLGGG 352 Query: 382 IISG 385 II Sbjct: 353 IIES 356 >gi|33634533|emb|CAE20519.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus str. MIT 9313] Length = 431 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 136/391 (34%), Positives = 197/391 (50%), Gaps = 38/391 (9%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 L P + RV V +SGGVDSS+ AALL G+ V G+TL L + KG+CC+ + Sbjct: 50 LQCWPGEQRVAVGLSGGVDSSLSAALLVEAGWQVEGLTLWLMS------GKGACCS-DGL 102 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA +C+ + + H+V D F+ ++ Y G TPLPC CNR+VKF+++LS Sbjct: 103 IDAAGICEQLKIPHHVVDSRATFQAEIVDQLVQGYQQGVTPLPCSRCNRSVKFAEMLSWA 162 Query: 134 R-QLGADVLATGHYIRSRLYVGD--------DGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 + +L +ATGHY R R D R + R +D +DQSYFL+ +Q Sbjct: 163 KKELQLHRVATGHYARIRHREDPEPQQALPGDSIGRHQLLRGLDQNKDQSYFLYDLSQDV 222 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEG 243 L + FPLG++ K R A GL A K +SQD+C G + A +G Sbjct: 223 LAKVIFPLGELTKAETRQEAERYGLRTAKKEESQDLCLADHYGSMKAFLDNYLP--ARQG 280 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 +IV +G+++G H+GI ++TIGQR+GLGVA EPL VV LD ++RVIV PR Sbjct: 281 EIVLQDGKVVGEHDGIEHFTIGQRKGLGVAWREPLHVVQLDAAANRVIVAPRAEAGRDNC 340 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-----------DGVYVDF 352 + +NW+ V++R PV + + + F Sbjct: 341 VVGAVNWISMA----PPSTTINVEVQVRYRSGPVAAQLTPIEATAEDIAADRPHRCRLTF 396 Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGII 383 + + + GQA VFY +D+ VLGGG+I Sbjct: 397 NEKQFSITPGQAAVFYAADT----VLGGGLI 423 >gi|297569866|ref|YP_003691210.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfurivibrio alkaliphilus AHT2] gi|296925781|gb|ADH86591.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfurivibrio alkaliphilus AHT2] Length = 358 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 137/370 (37%), Positives = 187/370 (50%), Gaps = 29/370 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RV VAMSGGVDSSV AAL+ + G +V GV ++L + V Sbjct: 10 QKRVAVAMSGGVDSSVTAALMLQAGAEVEGVFMRLAQPGIEDHQ----------RRVEGV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + V D E F V+ PF ++Y AG TP PCV CNR +KF LL G D Sbjct: 60 AAHLGIPLTVLDLAEPFGQKVLQPFVAAYLAGLTPNPCVFCNRQIKFGLLLEAMLSRGVD 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 LATGHY+R + D R++CR +D +DQSYFL ++ L + FPLG+ +K Sbjct: 120 FLATGHYVRLTPALPLD----RLLCRGLDPRKDQSYFLCRLKREVLPRILFPLGEKRKTE 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE-----GDIVHLNGQILG 254 V +LA +GL +SQD+CF+ + D + A G IV +G+ +G Sbjct: 176 VYELAASLGLSGRHGPESQDVCFLGEQTVADFLAAYAGQEAPAEGPAGGLIVTTDGREVG 235 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 RH G+ YTIGQRRGLG+ P +VV LD S+RV+VG E L +I L +NWL Sbjct: 236 RHRGVFRYTIGQRRGLGIPDDTPYYVVALDAQSNRVVVGKPEDLLRRQIRLGALNWL--- 292 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 D + V++R P P + DG +DF++ + A GQ FY D Sbjct: 293 --IDPPRLPARFSVQLRHRHRPAPALLTPAADGTFTLDFDQPQRAPAPGQYAAFYQED-- 348 Query: 374 EARVLGGGII 383 ++LGGG I Sbjct: 349 --QLLGGGEI 356 >gi|118473593|ref|YP_886701.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium smegmatis str. MC2 155] gi|166235065|sp|A0QUW3|MNMA_MYCS2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|118174880|gb|ABK75776.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium smegmatis str. MC2 155] Length = 356 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 141/371 (38%), Positives = 194/371 (52%), Gaps = 22/371 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+VAMSGGVDSSV AA + G+DV+GV L L +S + R GS CC+ +D DARR Sbjct: 1 MRVLVAMSGGVDSSVAAARMVDAGHDVVGVHLAL-SSAPGTLRTGSRGCCSKEDASDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ +RF++ VI F SYA GETP PCV CN +KFS L + LG Sbjct: 60 VADILGIPFYVWDFADRFKDDVIDDFVESYARGETPNPCVRCNERIKFSALAARALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R DG+ + R +D ++DQSY L T +QL FP+GD K Sbjct: 120 DAVATGHYARLS-----DGR----LRRAVDADKDQSYVLGVLTAEQLRHALFPIGDTPKP 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R A E GL +A+K DS DICF+ G + G +V +G +L H+G Sbjct: 171 QIRAEAAERGLAVAEKPDSHDICFIPTGDTKAFLGARIG--VRPGAVVDGSGTVLAEHDG 228 Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 + +TIGQR+GLG+A G P +V +D + V VGP E LEV + + Sbjct: 229 VHGFTIGQRKGLGIAGPGADGRPRYVTAIDAETGTVRVGPAEDLEVWELTGERPVFTSGV 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 +C V++R+ + D + + GVA GQ V Y D + Sbjct: 289 ----EPGGPIECQVQVRAHGGITDTVAELRDGKLELSLRAPLRGVAPGQTMVLYRPDPDG 344 Query: 375 ARVLGGGIISG 385 V+ I+ Sbjct: 345 DEVIASATITR 355 >gi|295086500|emb|CBK68023.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides xylanisolvens XB1A] Length = 361 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 115/374 (30%), Positives = 184/374 (49%), Gaps = 33/374 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV+V MSGG+DS+ +L+ GY+++GVT++++ DAR Sbjct: 4 RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + HYV D F+ ++ F Y G TP PCV CN KF L +L Sbjct: 50 LAERMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R ++ + D ++DQSYFL+ Q L FPLGD K Sbjct: 110 AWVATGHYSRL-----EEKNGNIYIVAGDDDKKDQSYFLWRLGQDVLKRCIFPLGDYTKV 164 Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILG 254 VR+ E G + + +S ++CF+ +G Y D ++ + G V+ G LG Sbjct: 165 KVREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDSEIGPGWFVNSEGVKLG 223 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +H G YTIGQR+GL +A+G+P +V+ ++ + V++G + LE + + Sbjct: 224 KHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLETEYMLAEQ----DKI 279 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + E + V+IR P+P V+R +DG + V F ++ +A GQ+ VFY Sbjct: 280 VDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAIAPGQSAVFYDG--- 336 Query: 374 EARVLGGGIISGSK 387 RVLGG I+ + Sbjct: 337 -RRVLGGAFIASQR 349 >gi|205822245|sp|A2CB44|MNMA_PROM3 RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 409 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 136/391 (34%), Positives = 198/391 (50%), Gaps = 38/391 (9%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 L P + RV V +SGGVDSS+ AALL G+ V G+TL L + KG+CC+ + Sbjct: 28 LQCWPGEQRVAVGLSGGVDSSLSAALLVEAGWQVEGLTLWLMS------GKGACCS-DGL 80 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA +C+ + + H+V D F+ ++ Y G TPLPC CNR+VKF+ +LS Sbjct: 81 IDAAGICEQLKIPHHVVDSRATFQAEIVDQLVQGYQQGVTPLPCSRCNRSVKFAAMLSWA 140 Query: 134 -RQLGADVLATGHYIRSRLYVGD--------DGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 ++ +ATGHY R R D R + R +D +DQSYFL+ +Q Sbjct: 141 EKERQLHRVATGHYARIRHREDPEPQQALPGDSSGRHQLLRGLDQNKDQSYFLYDLSQDV 200 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEG 243 L + FPLG++ K R A GL A K++SQD+C G + A +G Sbjct: 201 LAKVIFPLGELTKAETRQEAERYGLRTAKKAESQDLCLADHYGSMKAFLDNYLP--ARQG 258 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 +IV +G+++G H+GI ++TIGQR+GLGVA EPL VV LD ++RVIV PR Sbjct: 259 EIVLQDGKVVGEHDGIEHFTIGQRKGLGVAWREPLHVVQLDATANRVIVAPRAEAGRDSC 318 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-----------DGVYVDF 352 + +NW+ A+ V++R PV + + + F Sbjct: 319 VVGAVNWISIAPPSSAI----DVEVQVRYRSGPVAAQLIPIEATAEDIAADRPHRCRLTF 374 Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGII 383 + + + GQA VFY +D+ VLGGG+I Sbjct: 375 NEEQFSITPGQAAVFYAADA----VLGGGLI 401 >gi|257462397|ref|ZP_05626811.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Fusobacterium sp. D12] gi|317060061|ref|ZP_07924546.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. D12] gi|313685737|gb|EFS22572.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. D12] Length = 350 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 131/378 (34%), Positives = 200/378 (52%), Gaps = 30/378 (7%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 + +++ +RV +A+SGGVDSS VA LLK+ GYD+ GVT++ C Sbjct: 1 MVNMEYRAENAKIRVGIALSGGVDSSTVAYLLKKRGYDIFGVTMR-------------TC 47 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 +D DA++VC + + HYV D E F V+ F Y G TP PC+ CNR +KF Sbjct: 48 HEED-ADAKKVCQDLGIQHYVLDLTEDFSEKVMDYFVEEYMQGRTPNPCMVCNRHIKFGK 106 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL + GA +ATGHY + DG + D +DQ YFL +++L ++ Sbjct: 107 LLDFILEQGAQYMATGHYTKLV-----DG----HLSVGDDGGKDQVYFLSQVPKEKLKNI 157 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV-KRINAGIALEGDIVH 247 FP+GD++K VR+LA+E+G+ + K DSQ+ICFV+ G+ + ++ + +G+IV Sbjct: 158 IFPVGDLEKRQVRELAKELGVRVHAKKDSQEICFVEDGQLKQFLIEKTKGKVYNKGNIVD 217 Query: 248 LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE 307 +G+ILG+HNG+ YTIGQR+GLG++ PL+VV L+ + +IVG E L ++ Sbjct: 218 RDGKILGKHNGLSFYTIGQRKGLGISSESPLYVVELNSERNEIIVGNNEDLMREKLIAER 277 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF-EKSEVGVASGQACV 366 N E+ + +C+ K RS ++ + V F V GQ V Sbjct: 278 CNLFLVEHLEE--LHDMECYAKTRSRDSLHACRLEVVGKEIVVHFINNRVRAVTPGQGVV 335 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + +V+ GG I Sbjct: 336 FYN---EQGQVIAGGFIK 350 >gi|315920277|ref|ZP_07916517.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694152|gb|EFS30987.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 361 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 114/374 (30%), Positives = 183/374 (48%), Gaps = 33/374 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV+V MSGG+DS+ +L+ GY+++GVT++++ DAR Sbjct: 4 RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + HYV D F+ ++ F Y G TP PCV CN KF L +L Sbjct: 50 LAVRMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R ++ + D ++DQSYFL+ Q+ L FPLGD K Sbjct: 110 AWIATGHYSRL-----EEKNGYTYIVAGDDDKKDQSYFLWRLGQEVLKRCIFPLGDYTKV 164 Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILG 254 VR+ E G + + +S ++CF+ +G Y D ++ + G V+ G LG Sbjct: 165 KVREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPEMDSEIGPGWFVNSEGVKLG 223 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +H G YTIGQR+GL +A+G+P +V+ ++ + V++G + L + + Sbjct: 224 QHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLNTEYMLAEQ----DKI 279 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + E + V+IR P+P V+R +DG + V F ++ +A GQ+ VFY Sbjct: 280 VDEQELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAIAPGQSAVFYDG--- 336 Query: 374 EARVLGGGIISGSK 387 RVLGG I+ + Sbjct: 337 -RRVLGGAFIASQR 349 >gi|296171256|ref|ZP_06852660.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295894224|gb|EFG73981.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 358 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 138/371 (37%), Positives = 196/371 (52%), Gaps = 20/371 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRV 79 M+++ AMSGGVDSSV AA + G+DV+GV L L ++ A + CC+ +D DA RV Sbjct: 1 MKILAAMSGGVDSSVAAARMVDAGHDVVGVHLALSSAPGALRTGSRGCCSKEDASDASRV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + YV+D+ ERF+ VI F SSYA GETP PCV CN+ +KFS L + LG D Sbjct: 61 ADVLGIPFYVWDFAERFQADVIDDFVSSYARGETPNPCVRCNQRIKFSALSAKALALGFD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + R +D ++DQSY L T +QL FP+GD K Sbjct: 121 TVATGHYARLS---------GGRLRRAVDHDKDQSYVLAVLTAEQLRHATFPIGDTPKAQ 171 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R A GL +A K DS DICF+ G + A G +V +G +L +H+G+ Sbjct: 172 IRAEAARRGLAVAAKPDSHDICFIPSGDTRAFLGERIA--VRRGAVVGADGAVLAQHDGV 229 Query: 260 INYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 +T+GQR+GLG+A G P +V +D +++ V VG L+V + RE + Sbjct: 230 HGFTVGQRKGLGIAGPGPDGRPRYVTEIDADTATVRVGDAADLDVLELRGREPVFTAGRP 289 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 V +C V++R+ + P + D + V GVA GQ V Y D + Sbjct: 290 PSGLV----ECAVQVRAHGETAPAVAELVGDELIVRLRVPLRGVARGQTLVLYRPDPDGD 345 Query: 376 RVLGGGIISGS 386 VLG I+G+ Sbjct: 346 EVLGSATIAGT 356 >gi|239982445|ref|ZP_04704969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces albus J1074] gi|291454292|ref|ZP_06593682.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces albus J1074] gi|291357241|gb|EFE84143.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces albus J1074] Length = 381 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 142/394 (36%), Positives = 199/394 (50%), Gaps = 24/394 (6%) Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SC 67 S + P+ +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G C Sbjct: 4 TSPRTENPPRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGC 62 Query: 68 CAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFS 127 C +D DARR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ Sbjct: 63 CTIEDSRDARRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFA 122 Query: 128 DLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 LL LG D + TGHY +DG R + R D+ +DQSY L ++QL Sbjct: 123 ALLDKALALGFDAVCTGHYATV--VTREDGS--RELHRASDMAKDQSYVLGVLDERQLAH 178 Query: 188 LRFPLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDI 245 FPLGD K+ +R A GL +A K DS DICF+ G + EGDI Sbjct: 179 ALFPLGDTLTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTRGFLAGRLGTA--EGDI 236 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVH 301 + GQ +G H G YTIGQR+GL + G+P +V+ + + V VGP +L+V Sbjct: 237 LDEAGQKVGTHEGAYGYTIGQRKGLRIGTPAADGKPRYVLDISPVDNTVTVGPAAALDVT 296 Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVAS 361 + W G + ++R+ + PV + + + V F++ GVA Sbjct: 297 GLTAIRPRWCG-----TPPEGSGRYTAQLRAHGEETPVTAEVREGELTVTFDEPVRGVAP 351 Query: 362 GQACVFYTSDSNEARVLGGGIISGSKRSDAVEES 395 GQA V Y +RV+G I+ ++R+ AV + Sbjct: 352 GQAVVLYDG----SRVVGSATIAATRRAGAVPAA 381 >gi|124023662|ref|YP_001017969.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str. MIT 9303] gi|123963948|gb|ABM78704.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus str. MIT 9303] Length = 431 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 136/391 (34%), Positives = 198/391 (50%), Gaps = 38/391 (9%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 L P + RV V +SGGVDSS+ AALL G+ V G+TL L + KG+CC+ + Sbjct: 50 LQCWPGEQRVAVGLSGGVDSSLSAALLVEAGWQVEGLTLWLMS------GKGACCS-DGL 102 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA +C+ + + H+V D F+ ++ Y G TPLPC CNR+VKF+ +LS Sbjct: 103 IDAAGICEQLKIPHHVVDSRATFQAEIVDQLVQGYQQGVTPLPCSRCNRSVKFAAMLSWA 162 Query: 134 -RQLGADVLATGHYIRSRLYVGD--------DGKRRRIMCRPMDLERDQSYFLFATTQQQ 184 ++ +ATGHY R R D R + R +D +DQSYFL+ +Q Sbjct: 163 EKERQLHRVATGHYARIRHREDPEPQQALPGDSSGRHQLLRGLDQNKDQSYFLYDLSQDV 222 Query: 185 LCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEG 243 L + FPLG++ K R A GL A K++SQD+C G + A +G Sbjct: 223 LAKVIFPLGELTKAETRQEAERYGLRTAKKAESQDLCLADHYGSMKAFLDNYLP--ARQG 280 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 +IV +G+++G H+GI ++TIGQR+GLGVA EPL VV LD ++RVIV PR Sbjct: 281 EIVLQDGKVVGEHDGIEHFTIGQRKGLGVAWREPLHVVQLDATANRVIVAPRAEAGRDSC 340 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-----------DGVYVDF 352 + +NW+ A+ V++R PV + + + F Sbjct: 341 VVGAVNWISIAPPSSAI----DVEVQVRYRSGPVAAQLIPIEATAEDIAADRPHRCRLTF 396 Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGII 383 + + + GQA VFY +D+ VLGGG+I Sbjct: 397 NEEQFSITPGQAAVFYAADA----VLGGGLI 423 >gi|66472552|ref|NP_001018435.1| mitochondrial tRNA-specific 2-thiouridylase 1 [Danio rerio] gi|82192768|sp|Q503J2|MTU1_DANRE RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1 gi|63101232|gb|AAH95308.1| TRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Danio rerio] gi|182891436|gb|AAI64518.1| Trmu protein [Danio rerio] Length = 416 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 114/388 (29%), Positives = 177/388 (45%), Gaps = 36/388 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV AMSGGVDSSV A LLKR GY V GV ++ ++S+ + KG C + +D DA +VC Sbjct: 6 HVVCAMSGGVDSSVSALLLKRMGYHVTGVFMKNWDSQ---EEKGLCSSDRDCEDAYKVCK 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140 +++ + Y + + + V Y G TP P + CN+ +KF LGAD Sbjct: 63 MLDIPFHEVSYVKEYWHEVFSNLLWEYERGRTPNPDIICNKHIKFKHFYQYAVNTLGADA 122 Query: 141 LATGHYIRSRLYVGD------------------DGKRRRIMCRPMDLERDQSYFLFATTQ 182 +ATGHY R+ + + ++ + + DL +DQ++FL +Q Sbjct: 123 MATGHYARTSQEDEEVFQQKLTEAPKSLFRDRFEIRKPVRLYQGADLLKDQTFFLSQISQ 182 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 L FPL + K V+ +A E G + K +S ICF+ + + + + Sbjct: 183 DALRHTLFPLAGLTKGYVKKIAAEAGFQHVLKKKESMGICFIGKRDFENFILEYLE--PR 240 Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RES 297 G+ V + +GQI+G+H G T+GQR +G + FVV D ++ V V P + Sbjct: 241 PGNFVSIEDGQIMGKHKGWFTLTLGQRARIG-GRADAWFVVDKDVTTADVFVCPSTFHPA 299 Query: 298 LEVHRIYLREINWLGDGLFEDAV-VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKS 355 L + +W+ + + V C + P V N DG V+V ++ Sbjct: 300 LFRDTLQTDRFHWIAEEPPAELVHTQMMDCHFCFNNRMPLTPCTVTLNLDGSVWVMVKEP 359 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGII 383 G+A+GQ V Y LG G I Sbjct: 360 MRGMATGQFAVLYKG----HECLGSGKI 383 >gi|205829196|sp|B1WC37|MTU1_RAT RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1 gi|171846652|gb|AAI61991.1| Trmu protein [Rattus norvegicus] Length = 441 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 117/410 (28%), Positives = 183/410 (44%), Gaps = 56/410 (13%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV A+SGGVDS+V A LL+R GY V GV ++ ++S +G C A +D DA +VC Sbjct: 6 HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLD---EQGICAADKDCEDAYKVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140 +++ + Y + + N V F + Y G TP P + CN+ +KFS LGAD Sbjct: 63 ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDISCNKHIKFSCFHHYAVDNLGADA 122 Query: 141 LATGHYIRSRLYVGDDGKRRR------------------IMCRPMDLERDQSYFLFATTQ 182 +ATGHY R+ L + +++ + + D +DQ++FL +Q Sbjct: 123 VATGHYARTSLEDEEVFEQKHTKRPDGLFRNRFEVRNPVKLLQAADSFKDQTFFLSQVSQ 182 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKR------- 234 L FPLG++ K+ V+ +A E L + K +S ICF+ + + + Sbjct: 183 DALRRTIFPLGELTKDFVKKIAAENRLHHVLQKKESMGICFIGKRNLEHFLLQVSVSDVS 242 Query: 235 ---------------INAGIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPL 278 G + + + ++LG H G YT+GQR + + EP Sbjct: 243 GGLLWAGAPVVMKPVFQYLQPRPGKFISIEDNRVLGTHKGWFLYTLGQRAKIS-GLSEPW 301 Query: 279 FVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQ 334 +VV D V+V P +L + ++W+ + V D +C + R Sbjct: 302 YVVEKDGTKGDVLVAPRVDHPALYRDLLRTNRVHWIAEEPPAALVRDKMMECHFRFRHQM 361 Query: 335 DPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 VP + N DG V+V K+ G+A GQ VFY + LG G I Sbjct: 362 ALVPCVLTLNQDGTVWVTAVKAVRGLALGQFAVFYKGE----ECLGSGKI 407 >gi|163785075|ref|ZP_02179792.1| hypothetical protein HG1285_11328 [Hydrogenivirga sp. 128-5-R1-1] gi|159879656|gb|EDP73443.1| hypothetical protein HG1285_11328 [Hydrogenivirga sp. 128-5-R1-1] Length = 351 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 138/365 (37%), Positives = 201/365 (55%), Gaps = 17/365 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+V V MSGGVDSSV A LLK GYDV G+TL+L + + + CC+ QDV DA +V Sbjct: 1 MKVAVGMSGGVDSSVAALLLKEKGYDVTGITLKLSSIENSCDIQ-VCCSPQDVKDAEKVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139 + + HY D+E+ F+N VI F + G+TP PC CNR +K L GAD Sbjct: 60 SFLGIEHYTIDWEKDFKNKVIDYFVNELKEGKTPNPCSVCNREIKTGRLYKYVNLVFGAD 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 LATGHYI++ G ++++ R DL++DQSYF+ ++ L L FPLGD KE Sbjct: 120 FLATGHYIKTVEING-----QKLIKRGKDLKKDQSYFMALVEKEVLNGLLFPLGDFTKEE 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR +A + GL ++ K DS +ICF + ++ +GDI+H++G+ LG+H G+ Sbjct: 175 VRKIAEKYGLPVSQKKDSFEICFTAGKTPAEYIEENKIFELQKGDIIHISGKKLGKHRGL 234 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YTIGQRRGLGV +PL+V+ + ++ VIV L + + N+ + Sbjct: 235 AHYTIGQRRGLGVRWHKPLYVIDKNVENNTVIVAEDNYLLTDTVKAEDFNFHLPIEKWEG 294 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGV-YVDFEKSEVGVASGQACVFYTSDSNEARVL 378 ++ V+ R Q PV V +G+ + ++ +V ASGQ Y D +L Sbjct: 295 NLN-----VQGRYRQKPVEVEDFSYKNGILEIKLKQPQVKFASGQILAVYKDDI----LL 345 Query: 379 GGGII 383 GGGII Sbjct: 346 GGGII 350 >gi|227548033|ref|ZP_03978082.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium lipophiloflavum DSM 44291] gi|227079887|gb|EEI17850.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium lipophiloflavum DSM 44291] Length = 359 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 145/373 (38%), Positives = 193/373 (51%), Gaps = 22/373 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79 MRV+ AMSGGVDSSV AA L G+DV+GV L L +A++ CC+ +D DARRV Sbjct: 1 MRVLAAMSGGVDSSVAAARLVDAGHDVVGVHLALSRDPQATRESARGCCSLEDSADARRV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + + YV+D+ +RF+ VI F SY GETP PC+ CN +KF+ LL LG D Sbjct: 61 CDKLGIPFYVWDFSDRFKAEVIDNFVWSYDNGETPNPCLRCNEKIKFAALLDRALALGFD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY V D+G + R D +DQSY L T+ +L FP+GD +K Sbjct: 121 AVATGHYA----IVDDEGN----LRRSADPLKDQSYVLGVLTRAELDRCIFPVGDTEKPQ 172 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R+ A+ G A K DS DICF+ G + R G IV +G L H+G Sbjct: 173 IREEAKRHGFSTATKPDSYDICFIPDGNTQAFLGRSIG--MRPGMIVDADGTELKEHDGA 230 Query: 260 INYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 YTIGQRRGL + A G+P +V +D + V VGPR++LEV I + + Sbjct: 231 FQYTIGQRRGLDLRVPAADGQPRYVTDIDAATGVVTVGPRQALEVREIRADRL-----KV 285 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY--TSDSN 373 A+ F V+IR+ V + D + + GVA GQA V Y D Sbjct: 286 LHPAMNGTFTANVQIRAHGGVVGCDARVEGDEMVLALHSPLEGVARGQAAVLYLPDPDGL 345 Query: 374 EARVLGGGIISGS 386 VLG G I + Sbjct: 346 GDVVLGSGTICHT 358 >gi|118467226|ref|YP_883033.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium avium 104] gi|118168513|gb|ABK69410.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium avium 104] Length = 352 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 135/368 (36%), Positives = 195/368 (52%), Gaps = 22/368 (5%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84 MSGGVDSSV AA + G+DV+GV L L ++ + R GS CC+ +D DARRV D + Sbjct: 1 MSGGVDSSVAAARMVDAGHDVVGVHLAL-STAPGTLRTGSRGCCSKEDASDARRVADVLG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV+D+ E+F+ VI F S+YA GETP PCV CN+ +KFS L + LG D +ATG Sbjct: 60 IPFYVWDFAEKFQADVIDEFVSAYARGETPNPCVTCNQKIKFSALSAKAVALGFDAVATG 119 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY R + R +D ++DQSY L + +QL FP+GD K +R+ A Sbjct: 120 HYARLS---------GGRLRRAVDKDKDQSYVLAVLSAEQLRHAAFPIGDTPKPQIREEA 170 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI 264 GL +A+K DS DICF+ G + G +V+ +G +L H+G+ +TI Sbjct: 171 ARRGLAVAEKPDSHDICFIPSGNTRAFLGERIG--VRRGAVVNADGTVLAEHDGVHGFTI 228 Query: 265 GQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 GQR+GLG+A G P +V +D +++ V VG L+V + R + + A Sbjct: 229 GQRKGLGIAGPGPDGRPRYVTAIDADTATVRVGEAADLDVREMLGRAVVFTSGT----AP 284 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 F+C V++R+ + + D + V GVA GQ Y D + VLG Sbjct: 285 SGPFECAVQVRAHGETADAVAELVGDELVVRLRAPLRGVAPGQTLALYRHDPDGDEVLGS 344 Query: 381 GIISGSKR 388 I+G+ R Sbjct: 345 ATIAGTSR 352 >gi|119357892|ref|YP_912536.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobium phaeobacteroides DSM 266] gi|205813544|sp|A1BI85|MNMA_CHLPD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|119355241|gb|ABL66112.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobium phaeobacteroides DSM 266] Length = 357 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 137/372 (36%), Positives = 201/372 (54%), Gaps = 25/372 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRVCD 81 VVV +SGGVDS+V A LL + GY V+G+ +++ ++ S D D + Sbjct: 5 VVVGISGGVDSAVAACLLMKQGYRVLGLNIRILDTPDEHPSLAPSPLLISDHADYQ---- 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + RF VI F + Y AG+TP PC+ CN+ +K+ LL R LGA+ + Sbjct: 61 ---FPVFSLNLSARFSQEVIRYFQADYLAGKTPNPCMVCNKKIKWHGLLEGARLLGAERI 117 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R+ G R + + +D ++DQSYFL+ +Q L FPLG++ KE VR Sbjct: 118 ATGHYARTASLDG-----RVRLYKGLDPQKDQSYFLWMLSQNDLNKTCFPLGELAKEKVR 172 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRHNG 258 +LAR G+ A+K +SQ+ICFV Y ++ G+ + GDIV NG++LG+H G Sbjct: 173 ELARTFGVRAAEKKESQEICFVPHDDYCRYLELAVPGLKEKVAGGDIVDENGKVLGKHRG 232 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 YTIGQRRGLG++ EPL+V LD+ ++ V G + SL+ + + +NW+ + ++ Sbjct: 233 YPFYTIGQRRGLGLSSTEPLYVTALDQENNCVHTGNKSSLDTRSLTVSGLNWINNKSLDE 292 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 V + F KIR P + DG + F ++ VA GQA VFY + V Sbjct: 293 PV----EAFGKIRYRDRETPCTIAPLPDGQATITFHTAKHAVAPGQAAVFYHDE----EV 344 Query: 378 LGGGIISGSKRS 389 LGGG IS R Sbjct: 345 LGGGFISAVNRD 356 >gi|94266357|ref|ZP_01290057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [delta proteobacterium MLMS-1] gi|93453040|gb|EAT03525.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [delta proteobacterium MLMS-1] Length = 389 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 138/399 (34%), Positives = 194/399 (48%), Gaps = 41/399 (10%) Query: 4 SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63 S+A N++ + +V VAMSGGVDSSV AALL++ G +V GV ++L + R Sbjct: 5 SQAIHQNNIFVGPEIAGRQVAVAMSGGVDSSVTAALLQQAGAEVRGVFMRLAQPEVEAHR 64 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 + A V D + + V D + FR V+ PF +Y AG TP PCV CNR Sbjct: 65 QR----------AAAVADFLGIELTVLDLAQPFRQQVLNPFVEAYLAGLTPNPCVFCNRL 114 Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183 +KF LL G ++LATGHY+R R +CR +D +DQSYFL + Sbjct: 115 IKFGLLLETLLAQGVELLATGHYVRLLPAA----TGGRRLCRGLDPGKDQSYFLCRLAAE 170 Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN------- 236 +L L FPLGD K V LA +GL S+SQDICF+ + D + Sbjct: 171 KLPRLLFPLGDKHKSEVYQLAARLGLSGRHGSESQDICFLGKQSVGDFLAAHGPPGGAEG 230 Query: 237 -----------AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDK 285 A +G IV ++G+ LG+H G+ YT+GQRRGLG+ P +VV LD Sbjct: 231 AGPAAGGGEVSELRARQGRIVTVDGRELGQHGGVHRYTVGQRRGLGIPDATPYYVVALDA 290 Query: 286 NSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND 345 + V+VG E L+ I L ++NWL + V++R P P ++ Sbjct: 291 ARNLVVVGKPEDLQRRLIRLADLNWLTTA----PPPLPARFAVQLRHRHRPAPALIEPAA 346 Query: 346 DG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 DG V F++ + A GQ Y + ++L GG I Sbjct: 347 DGTFSVSFDEPQRAPAPGQYAALYDGE----QLLAGGEI 381 >gi|94263083|ref|ZP_01286902.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [delta proteobacterium MLMS-1] gi|93456626|gb|EAT06734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [delta proteobacterium MLMS-1] Length = 443 Score = 389 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 137/399 (34%), Positives = 195/399 (48%), Gaps = 41/399 (10%) Query: 4 SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63 S+A N++ + +V VAMSGGVDSSV AALL++ G +V GV ++L + R Sbjct: 59 SQAIHQNNIFVGPEIAGRQVAVAMSGGVDSSVTAALLQQAGAEVRGVFMRLAQPEVEAHR 118 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 + A V D + + V D + FR V+ PF +Y AG TP PCV CNR Sbjct: 119 QR----------AAAVADFLGIELTVLDLAQPFRQQVLNPFVEAYLAGLTPNPCVFCNRL 168 Query: 124 VKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183 +KF LL + G ++LATGHY+R R +CR +D +DQSYFL + Sbjct: 169 IKFGLLLEILLAQGVELLATGHYVRLLPAA----TGGRRLCRGLDPGKDQSYFLCRLAAE 224 Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN------- 236 +L L FPLGD K V LA +GL S+SQD+CF+ + D + Sbjct: 225 KLPRLLFPLGDKHKSEVYQLAARLGLSGRHGSESQDVCFLGKQSVGDFLAAHGPPGGAEG 284 Query: 237 -----------AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDK 285 A +G IV ++G+ LG+H G+ YT+GQRRGLG+ P +VV LD Sbjct: 285 AGPAAGGGEVSELRARQGRIVTVDGRELGQHGGVHRYTVGQRRGLGIPDATPYYVVALDA 344 Query: 286 NSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND 345 + V+VG E L+ I L ++NWL + V++R P P ++ Sbjct: 345 ARNLVVVGKPEDLQRRLIRLADLNWLTTA----PPPLPARFAVQLRHRHRPAPALIEPAA 400 Query: 346 DG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 DG V F++ + A GQ Y + ++L GG I Sbjct: 401 DGTFSVSFDEPQRAPAPGQYAALYDGE----QLLAGGEI 435 >gi|300858284|ref|YP_003783267.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Corynebacterium pseudotuberculosis FRC41] gi|300685738|gb|ADK28660.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Corynebacterium pseudotuberculosis FRC41] gi|302206004|gb|ADL10346.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium pseudotuberculosis C231] gi|302330557|gb|ADL20751.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium pseudotuberculosis 1002] gi|308276239|gb|ADO26138.1| tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium pseudotuberculosis I19] Length = 372 Score = 389 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 145/379 (38%), Positives = 205/379 (54%), Gaps = 19/379 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79 MRV+ AMSGGVDS+V AA G++V+GV L L + + CC+ +D DARRV Sbjct: 1 MRVLAAMSGGVDSAVAAARAVAAGHEVVGVHLALSQDPQTVRESSRGCCSLEDSADARRV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + + YV+D+ +RF+ VI F SSY AGETP PC+ CN +KF+ LL LG D Sbjct: 61 CDKLGIPFYVWDFSDRFKEDVIDDFISSYEAGETPNPCLRCNEKIKFAALLERGIALGFD 120 Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + TGHY + ++ G DG + R +D E+DQSY L +++++ FP+GD K Sbjct: 121 AVVTGHYAQLTQPEDGGDG----YLRRAIDPEKDQSYVLGVLSEKEIAHCMFPVGDTVKP 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R+ A G +A K DS DICF+ G + R G IV G+ L H+G Sbjct: 177 KIREEAAAQGFSVAKKPDSYDICFIPDGNTQAFLGRHIGL--RPGMIVDTEGRALKEHDG 234 Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 NYTIGQR+GL + A G+P +V +D + V VG R+ L V +IY + +L Sbjct: 235 AWNYTIGQRKGLDIKQPAADGKPRYVTDIDAATGTVTVGSRDDLSVSQIYADRLKYLHPA 294 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSDS 372 L D F V++R+ VP V + +D + + K GVA GQA V Y D+ Sbjct: 295 LSGD-----FSAEVQVRAHGSVVPCHVSVDSHNDTMTITLHKPLSGVARGQAAVIYLPDA 349 Query: 373 NEARVLGGGIISGSKRSDA 391 VLG G I +++S + Sbjct: 350 GGDIVLGSGTIYSTQKSPS 368 >gi|110596963|ref|ZP_01385253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobium ferrooxidans DSM 13031] gi|110341650|gb|EAT60110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Chlorobium ferrooxidans DSM 13031] Length = 361 Score = 389 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 135/372 (36%), Positives = 199/372 (53%), Gaps = 25/372 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS-RKASKRKGSCCAGQDVYDAR 77 + +VVV +SGGVDS+ A LLK+ GY V G+ +++ +S + + S D D + Sbjct: 3 EQKKVVVGISGGVDSATTACLLKKAGYAVTGLNIRVLDSLEDSPSLQPSPLVISDHPDFQ 62 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + + +FR+ VI F + Y G TP PC+ CN+ +K+ L + L Sbjct: 63 -------IPVLTLNLSRKFRDDVITYFHNDYLGGHTPNPCMVCNKKIKWFGLFEGLKLLE 115 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGH+ + G R + + +D E+DQSYFL+ +Q L PLG+M K Sbjct: 116 ADFIATGHFASTSFSDG-----RYRLYKGVDPEKDQSYFLWMLSQSDLAKTLLPLGEMVK 170 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILG 254 VR LARE G+ A+K +SQ+ICFV Q Y ++ G+A + G+IV G ++G Sbjct: 171 PEVRRLAREFGVRAAEKKESQEICFVPQDDYCSYLEGAIPGLAEKVSGGEIVDEAGTVIG 230 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +H G YTIGQRRGLGVA PL+V +D +R+ VG + +LE ++ +NW+G Sbjct: 231 KHRGYPFYTIGQRRGLGVAAKVPLYVTEIDPEHNRIHVGQKSALETRKLVASGLNWIGI- 289 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSN 373 D V KIR P ++ D+ V V F+ + GV++GQA VFY Sbjct: 290 ---DGVNAPVTALGKIRYRDKETPCTIEPLADNEVAVAFDAPKSGVSTGQAAVFYR---- 342 Query: 374 EARVLGGGIISG 385 E+ VLGGG I+ Sbjct: 343 ESEVLGGGFITK 354 >gi|315185969|gb|EFU19733.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Spirochaeta thermophila DSM 6578] Length = 376 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 128/390 (32%), Positives = 190/390 (48%), Gaps = 19/390 (4%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 M+ + D+ + R+VVAMSGGVDSSV A LL G +V+G+T N+ Sbjct: 1 MIHTSEHHTPFQDIRDTRRPRRLVVAMSGGVDSSVTAHLLLSAGIEVVGLTFIRVNTPAE 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +G ++ AR V + + H+V + + + + V+ Y +G TP PCV C Sbjct: 61 VDHEG---FSEEARAAREVASHLGIEHHVLNLHDLYTSRVLRRAWEEYRSGRTPNPCVLC 117 Query: 121 NRTVKFSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFA 179 NRT+KF L+ R+ L AD +ATGHY R + D + + R ++QSYFL Sbjct: 118 NRTLKFGHLVRYAREVLRADGIATGHYARIYV----DAEGCVHLLRGKAGTKEQSYFLAQ 173 Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQG-KYFDVVKRINAG 238 T + L FPLGD K +R AR G+ A++ +SQD+CF G ++ + ++ Sbjct: 174 TRPEDLRHAYFPLGDQTKNEIRTYARHHGIPTAERPESQDVCFNTTGLRFGEFLQEFFEE 233 Query: 239 IALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ES 297 G I+ G +LGRH GI +TIGQRRGLGVA+G P++V +D + VIV R E+ Sbjct: 234 GGESGPILDERGNVLGRHRGIHVFTIGQRRGLGVALGRPVYVKAIDPERNAVIVTDREEA 293 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEV 357 L + +NW + +IR + P + D + V F + + Sbjct: 294 LLHRVVEAAGVNWFA-----PPPPRPMEVLAQIRYAHRAAPAVLTHEGDRIRVRFHEPQR 348 Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGSK 387 V GQ V Y D VL G I ++ Sbjct: 349 AVTPGQLLVAYVGD----EVLCSGFILQTE 374 >gi|167765362|ref|ZP_02437475.1| hypothetical protein BACSTE_03750 [Bacteroides stercoris ATCC 43183] gi|167696990|gb|EDS13569.1| hypothetical protein BACSTE_03750 [Bacteroides stercoris ATCC 43183] Length = 361 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 122/378 (32%), Positives = 192/378 (50%), Gaps = 33/378 (8%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 + N + RV+V MSGG+DS+ +L+ GY+++G+T+ ++ + A Sbjct: 6 NMNKSEKRVLVGMSGGIDSTATCLMLREQGYEIVGLTMWVWGNEPAE------------- 52 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 AR + D++ + H+V D E FR ++ F Y G TP PCV CN KF L Sbjct: 53 -ARNLADSMGIEHHVADEREAFRQIIVQNFIDEYRQGRTPNPCVMCNPLFKFRILTEWAD 111 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 +L +ATGHY R ++ R+ + D ++DQSYFL+ Q L FPLG Sbjct: 112 KLNCRYIATGHYTRL-----EEQNRKIYIVAGDDDKKDQSYFLWRLGQDVLRRCLFPLGT 166 Query: 195 MKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNG 250 K VRD R+ G A++ +S ++CF+ +G Y D ++ + I G V+ G Sbjct: 167 YTKMQVRDYLRDKGYAPKAEEGESMEVCFI-KGDYRDFLREHSPEIDNEVGPGWFVNSEG 225 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 LG H G YTIGQR+GL +A+G+P +V+ ++ + V++G E L+ + + N Sbjct: 226 VKLGEHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKAEYMLAEQDNL 285 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + +G V + V+IR P+P V+R +DG + V FE +A GQ+ VFY Sbjct: 286 IDEG----EVFGSGELTVRIRYRSKPIPCSVKRLEDGRLLVHFETEASAIAPGQSAVFYI 341 Query: 370 SDSNEARVLGGGIISGSK 387 RV+GG I+ + Sbjct: 342 G----KRVVGGSFIASQR 355 >gi|293370352|ref|ZP_06616907.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides ovatus SD CMC 3f] gi|292634573|gb|EFF53107.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides ovatus SD CMC 3f] Length = 361 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 115/374 (30%), Positives = 184/374 (49%), Gaps = 33/374 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV+V MSGG+DS+ +L+ GY+++GVT++++ DAR Sbjct: 4 RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + HYV D F+ ++ F Y G TP PCV CN KF L +L Sbjct: 50 LAERMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R ++ + D ++DQSYFL+ Q L FPLGD K Sbjct: 110 AWVATGHYSRL-----EEKNGNIYIVAGDDDKKDQSYFLWRLGQDVLKRCIFPLGDYTKV 164 Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILG 254 VR+ E G + + +S ++CF+ +G Y D ++ + G V+ G LG Sbjct: 165 KVREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDSEIGPGWFVNSEGVKLG 223 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +H G YTIGQR+GL +A+G+P +V+ ++ + V++G + LE + + Sbjct: 224 KHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLETEYMLAEK----DKI 279 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + E + V+IR P+P V+R +DG + V F ++ +A GQ+ VFY Sbjct: 280 VDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAIAPGQSAVFYDG--- 336 Query: 374 EARVLGGGIISGSK 387 RVLGG I+ + Sbjct: 337 -RRVLGGAFIASQR 349 >gi|262408193|ref|ZP_06084740.1| tRNA methyl transferase [Bacteroides sp. 2_1_22] gi|294806750|ref|ZP_06765577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides xylanisolvens SD CC 1b] gi|262353745|gb|EEZ02838.1| tRNA methyl transferase [Bacteroides sp. 2_1_22] gi|294446032|gb|EFG14672.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides xylanisolvens SD CC 1b] Length = 361 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 116/374 (31%), Positives = 185/374 (49%), Gaps = 33/374 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV+V MSGG+DS+ +L+ GY+++GVT++++ DAR Sbjct: 4 RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + HYV D F+ ++ F Y G TP PCV CN KF L +L Sbjct: 50 LAERMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R ++ + D ++DQSYFL+ Q L FPLGD K Sbjct: 110 AWVATGHYSRL-----EEKNGNIYIVAGDDDKKDQSYFLWRLGQDVLKRCIFPLGDYTKV 164 Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILG 254 VR+ E G + + +S ++CF+ +G Y D ++ + E G V+ G LG Sbjct: 165 KVREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDSEIGSGWFVNSEGVKLG 223 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +H G YTIGQR+GL +A+G+P +V+ ++ + V++G + LE + + Sbjct: 224 KHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLETEYMLAEQ----DKI 279 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + E + V+IR P+P V+R +DG + V F ++ +A GQ+ VFY Sbjct: 280 VDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAIAPGQSAVFYDG--- 336 Query: 374 EARVLGGGIISGSK 387 RVLGG I+ + Sbjct: 337 -RRVLGGAFIASQR 349 >gi|126434444|ref|YP_001070135.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium sp. JLS] gi|166235066|sp|A3PXL7|MNMA_MYCSJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|126234244|gb|ABN97644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium sp. JLS] Length = 359 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 146/372 (39%), Positives = 195/372 (52%), Gaps = 22/372 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+VAMSGGVDSSV AA + G+DV+GV L L ++ + R GS CC+ +D DARR Sbjct: 1 MRVLVAMSGGVDSSVAAARMVDAGHDVVGVHLAL-SATPGTLRTGSRGCCSKEDAGDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D +++ YV+D+ +RF+ VI F +SY GETP PCV CN +KFS L LG Sbjct: 60 VADVLDIPFYVWDFADRFKEDVIDDFVASYERGETPNPCVRCNEKIKFSALAGRALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY R DG+ + R +D ++DQSY L T QQL FP+GD K Sbjct: 120 DALATGHYARLS-----DGR----LRRAVDADKDQSYVLAVLTAQQLRHAVFPIGDTPKA 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R A E GL +ADK DS DICF+ G + G +V G L H G Sbjct: 171 QIRAEAAERGLAVADKPDSHDICFIPSGDTRAFLGARIG--VRRGAVVDAGGTKLAEHEG 228 Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 + +TIGQR+GLG+A G+P +V +D + V VG E L+V R+ + Sbjct: 229 VHGFTIGQRKGLGIAGPGPDGQPRYVTGIDAATGTVRVGGAEDLDVSRLTGERPVFTSGA 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 F V +C V++R+ + + V+ GVA+GQ V Y D Sbjct: 289 AFGGPV----ECQVQVRAHGGLADAVASHDAGVLSVELRAPLRGVAAGQTMVIYRPDPEG 344 Query: 375 ARVLGGGIISGS 386 VL ISG+ Sbjct: 345 DEVLASATISGA 356 >gi|68536405|ref|YP_251110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium jeikeium K411] gi|123650729|sp|Q4JUL5|MNMA_CORJK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|68264004|emb|CAI37492.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium jeikeium K411] Length = 395 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 137/389 (35%), Positives = 195/389 (50%), Gaps = 38/389 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRV 79 MRVV AMSGGVDS+V A+ G++VIGV L L S +A CC+ +D DARRV Sbjct: 1 MRVVAAMSGGVDSAVAASRALEAGHEVIGVHLALSQSPEAVRAGSRGCCSLEDSADARRV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + YV+D+ +RF+ VI F SYA GETP PC+ CN +KF LL + LG D Sbjct: 61 ADKLGIPFYVWDFSDRFKADVIDDFVDSYAIGETPNPCLRCNEKIKFEALLDRSIALGFD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 + TGHY R V M R +D +DQSY L T +QL FP+GD K Sbjct: 121 AVVTGHYARLHDGV---------MRRGVDANKDQSYVLGVLTDEQLAHCMFPVGDTIKPE 171 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R+ A++ G +A K DS DICF+ G+ + + G + +G + H+G+ Sbjct: 172 IREEAKDHGFGVASKPDSHDICFIPDGQTQAFLGKKIGL--RPGLMKDQDGSTVAEHDGV 229 Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 +TIGQR+GLG+ G+P +V +D + V +G R+ L V I + L + Sbjct: 230 YGFTIGQRKGLGLPREGLDGKPRYVTDIDAATGTVTIGQRDDLRVGGITADRLKRLDPAV 289 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD------------------GVYVDFEKSEV 357 F+C V++R+ VP + DD + +D + Sbjct: 290 H----GREFECEVQVRAHGGVVPATARLVDDPERTTPAGRVKKEDESPWRLELDLHEPLQ 345 Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGS 386 GVA GQA V Y D++ +LG G I + Sbjct: 346 GVARGQAAVVYQPDADGDILLGSGTIRAT 374 >gi|298384831|ref|ZP_06994390.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 1_1_14] gi|298261975|gb|EFI04840.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 1_1_14] Length = 362 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 116/374 (31%), Positives = 183/374 (48%), Gaps = 33/374 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV+V MSGG+DS+ +L+ GY+++GVT++++ DAR Sbjct: 4 RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + HYV D F+ ++ F Y G TP PCV CN KF L +L Sbjct: 50 LAARMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLAEWADKLDC 109 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R ++ + D ++DQSYFL+ Q L FPLGD K Sbjct: 110 AYIATGHYSRL-----EERNGHIYIVAGDDDKKDQSYFLWRLGQDILKRCIFPLGDYTKI 164 Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILG 254 VR+ E G + + +S ++CF+ +G Y D ++ + G V+ G LG Sbjct: 165 KVREYLAEKGYEAKSKEGESMEVCFI-RGDYRDFLREQCPELDTEIGPGWFVNSEGVKLG 223 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +H G YTIGQR+GL +A+G+P +V+ ++ + V++G E L+ + + Sbjct: 224 QHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLQTEYMLAEQ----DRI 279 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + E + V+IR P+P V+R +DG + V F ++ VA GQ+ VFY Sbjct: 280 VDEQELFSCENLAVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAVAPGQSAVFYDG--- 336 Query: 374 EARVLGGGIISGSK 387 RVLGG I+ + Sbjct: 337 -RRVLGGAFIASQR 349 >gi|85057877|ref|YP_456793.1| tRNA (5-methylaminomethyl-2-thioruidylate) methyltransferase [Aster yellows witches'-broom phytoplasma AYWB] gi|123518066|sp|Q2NIM9|MNMA_AYWBP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|84789982|gb|ABC65714.1| tRNA (5-methylaminomethyl-2-thioruidylate) methyltransferase [Aster yellows witches'-broom phytoplasma AYWB] Length = 378 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 108/381 (28%), Positives = 173/381 (45%), Gaps = 27/381 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS------CCAGQDVY 74 +VVV +SGGVDS+V A LLK+ GY V V ++ ++S +G+ C D Sbjct: 2 TKVVVGLSGGVDSAVAAFLLKKQGYLVEAVFMRNWDSNLNFDIQGNPTLNDICPQELDYK 61 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-T 133 DA +V + + + + D+ E + V + F ++ TP P + CN +KF + T Sbjct: 62 DALKVSEQLGIKLHRVDFIEEYWQKVFMSFIKAFENNLTPNPDILCNNEIKFRAFIEYVT 121 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 +L +A GHY + K + +D +DQ+YFL +QL ++ FPLG Sbjct: 122 TKLAPRYIAMGHYANIIYETFSEQKLFPQLACAVDQNKDQTYFLSQLATKQLQNILFPLG 181 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 ++ K+ VR +A E L A K DS ICF+ + +F + A +GDI L+G L Sbjct: 182 NLTKQEVRQIALENNLINATKKDSTGICFIGERNFFQFLSNYLP--AQKGDIKTLDGTFL 239 Query: 254 GRHNGIINYTIGQRRGLGVA---MGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 H G++ YTIGQR+ LG+ +P FVV ++ + V L + + + Sbjct: 240 AHHKGVMYYTIGQRKNLGLGDFSSQKPWFVVGKHLQTNTLYVEQGNTHPYLYSDKALISD 299 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACV 366 I W K+R Q V + D + + + + ++ V GQ C Sbjct: 300 IVW-------RGKKTNLHLQAKMRYRQPNQDVILTWIDQNTLEIYYPQTIKAVTPGQICA 352 Query: 367 FYTSDSNEARVLGGGIISGSK 387 FY ++ G G+I Sbjct: 353 FYNNNI----CCGAGVIKEVY 369 >gi|284032792|ref|YP_003382723.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Kribbella flavida DSM 17836] gi|283812085|gb|ADB33924.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Kribbella flavida DSM 17836] Length = 372 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 144/388 (37%), Positives = 191/388 (49%), Gaps = 24/388 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA + G++V+GV L L + S R G CC +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARMAEAGHEVVGVHLAL-SRNPQSYRSGARGCCTIEDSRDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D I + YV+D ERF V+ F + YAAG TP PC+ CN VKFS +L L Sbjct: 60 AADVIGIPFYVWDLAERFHADVVEDFVAEYAAGRTPNPCLRCNEKVKFSAVLERALALDF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + + R + R +D +DQSY L TQ+QL FPLGD K Sbjct: 120 DAVATGHYAQIV-----ETPAGRELHRAVDQAKDQSYVLGVLTQEQLRHAFFPLGDTPKT 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R A GL +A K DS DICF+ G + + GDIV NG LG H G Sbjct: 175 EIRAEAERRGLSVAAKPDSHDICFIADGNTPGFLSKQLGEA--PGDIVDSNGTKLGEHKG 232 Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +T+GQR+GL + G+P FV+ + V VG RE L V + + W G Sbjct: 233 THGFTVGQRKGLRIGTPAADGKPRFVLDISPVDRTVTVGSREELAVESLTASKPRWCGPV 292 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 + ++R+ D V V + D V+V F++ VA GQA V Y Sbjct: 293 -----PTETLHVKAQLRAHGDEVAVTARVEGDQVFVTFDEPTAAVAPGQAVVLYDG---- 343 Query: 375 ARVLGGGIISGSKRS-DAVEESLLSVIG 401 RV+G I R+ + V+G Sbjct: 344 TRVVGSATIDTVARALLSAAPPARRVMG 371 >gi|313149619|ref|ZP_07811812.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313138386|gb|EFR55746.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 362 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 119/374 (31%), Positives = 189/374 (50%), Gaps = 33/374 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + RV+V MSGG+DS+ +L+ GY+++GVT++++ DAR Sbjct: 4 SNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + HYV D F++ ++ F Y G TP PCV CN KF L+ +LG Sbjct: 50 LAVRMGIEHYVADERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGC 109 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R ++ + D ++DQSYFL+ Q L FPLG+ K+ Sbjct: 110 DWIATGHYSRL-----EERNGYIYIVAGDDEKKDQSYFLWRLGQDVLRRCIFPLGNYTKQ 164 Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILG 254 +VRD RE G + + +S ++CF+ +G Y D ++ + G V G LG Sbjct: 165 TVRDYLREKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDAEIGPGWFVSSEGVKLG 223 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +H G YTIGQR+GL +A+G+P +V+ ++ + V++G E L+ + + N + Sbjct: 224 QHRGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKAGYMVAEQDNIVD-- 281 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 ED + + V+IR P+P V+R +DG + V F +A GQ+ VFY Sbjct: 282 --EDELFSCPELAVRIRYRSRPIPCRVKRLEDGRLLVRFLAEASAIAPGQSAVFYDG--- 336 Query: 374 EARVLGGGIISGSK 387 RV+GG I+ + Sbjct: 337 -RRVIGGAFIASQR 349 >gi|158300718|ref|XP_320574.3| AGAP011960-PA [Anopheles gambiae str. PEST] gi|157013296|gb|EAA00244.3| AGAP011960-PA [Anopheles gambiae str. PEST] Length = 377 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 102/372 (27%), Positives = 177/372 (47%), Gaps = 20/372 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV +SGGVDS+V A LLK+ G++V G ++ ++ G C QD DA+R+C Sbjct: 4 RVVVGISGGVDSAVSAYLLKKRGFEVCGAFMKNWD---LIDESGYCSGEQDFEDAQRLCR 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 T+N+ ++ + + V F Y AG TP P + CNR +KF+ R+ LGAD Sbjct: 61 TLNIPLEEINFVKDYWVEVFGNFLKDYEAGITPNPDILCNRHIKFNRFFHHARERLGADA 120 Query: 141 LATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 +ATGHY R+ + + + D +DQ++FL + + L FP+G + K Sbjct: 121 IATGHYARTNFGPFLERYNENEKVRLLMAPDPIKDQTFFLSQISAEALRRTMFPIGALTK 180 Query: 198 ESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGR 255 V+ LA E+GL+ A K +S ICFV + + + G V ++ G+ +G+ Sbjct: 181 PQVKRLAIEVGLEAYARKKESMGICFVGKRSFQQFIGEYIE--TKPGPFVDVDSGREVGQ 238 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLG 312 H G+ ++T+GQ+ +G +P +V+ + S+ + V L +Y W+ Sbjct: 239 HAGLHHWTVGQKCKIGGC-PQPYYVLRKHRASNVIEVASGHDHPLLYTDMVYTERPVWIN 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 + +C + + ++ V ++ + ++V ++ + GQ VFY ++ Sbjct: 298 APPGLSSEGRVVRCEFRFQHTKPLVGCSVIETHGRQLFVKLDRPLRAITPGQYAVFYRNE 357 Query: 372 SNEARVLGGGII 383 G I Sbjct: 358 ----ECFGSARI 365 >gi|224025546|ref|ZP_03643912.1| hypothetical protein BACCOPRO_02286 [Bacteroides coprophilus DSM 18228] gi|224018782|gb|EEF76780.1| hypothetical protein BACCOPRO_02286 [Bacteroides coprophilus DSM 18228] Length = 361 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 128/373 (34%), Positives = 186/373 (49%), Gaps = 27/373 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ +V++ MSGG DSSV A LL+ GY+V G+T + Y ++ + DAR Sbjct: 12 KNNKVLLGMSGGTDSSVAAMLLQDAGYEVTGITFRFYEKDFQTEY---------LEDARH 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 +C+ + + H +D E F +I F Y G TP+PC CN +K+ L + + G Sbjct: 63 LCEQLGIRHLTYDAREVFEEQIIHYFIQEYMNGRTPVPCTLCNNQLKWPLLKEIADREGI 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 LATGHY+R + G R + D ++DQS+FL+ Q L FP+G++ K Sbjct: 123 YHLATGHYVRKQTVNG-----RWFIRSGADPDKDQSFFLWGLPQDLLERALFPMGELTKV 177 Query: 199 SVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINA-GIALEGDIVHLNGQILGRH 256 VR++A E G L A K DS +CF Y +K G G+ + G+ LG+H Sbjct: 178 RVREIAAERGQLKAARKRDSLGVCFCPM-DYRTFLKSHVPEGQISPGEFLDEEGRKLGQH 236 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLREINWLGDGL 315 G YTIGQRRGLG+ + + LFV +RVIV +LE + L + N + Sbjct: 237 EGYPFYTIGQRRGLGIWLNKTLFVKETLPEQNRVIVCDNLRALEKQEMLLTDWNLID--- 293 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374 + ++ VKIR + V DG ++V+ + VA GQA VFY D Sbjct: 294 -PETALNHPDVIVKIRYRKQANRCTVTCTGDGCLHVNLHEPLASVAPGQAAVFYRDD--- 349 Query: 375 ARVLGGGIISGSK 387 VLGGGII+ S+ Sbjct: 350 -LVLGGGIIATSR 361 >gi|212721228|ref|NP_001131207.1| hypothetical protein LOC100192515 [Zea mays] gi|194690872|gb|ACF79520.1| unknown [Zea mays] Length = 486 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 120/373 (32%), Positives = 178/373 (47%), Gaps = 20/373 (5%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +RV V +SGGVDSSV LL G+ L+++ C +D+ A+ V Sbjct: 74 PLRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIWFQEDFRNFWSECPWDEDLKYAQAV 133 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD I+V V + + N V+ + Y G TP P V CN +KF L LG D Sbjct: 134 CDKIDVPLEVVHLSDEYWNHVVSHMINEYRCGRTPNPDVLCNTRIKFGSFLEAIENLGFD 193 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +A+GHY ++ + ++ D +DQ+YFL +Q QL L FPLG + K+ Sbjct: 194 YIASGHYAHVVHPSAENTEAPSVLQLSKDKIKDQTYFLSHLSQSQLRRLLFPLGCITKDE 253 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258 VR LA +MGL + DSQ ICF+ + K+ + V+R EG I+ +G LG H G Sbjct: 254 VRRLATQMGLPNQGRKDSQGICFLGKVKFSEFVERHIGE--KEGIILEAESGDYLGIHRG 311 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHR--IYLREINWLGDGL 315 YTIGQR+GL + G P +VV D ++ V V SL+ R + +NW + Sbjct: 312 FWFYTIGQRQGLRLPGG-PWYVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFDNC- 369 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFV-----QRNDDGVYVDFEKSEVGVASGQACVFYTS 370 + + K+R S + + + N D + V + + G+A+GQ FY+ Sbjct: 370 ---GPGNNEQLKCKVRHSPEFHDCTLVKERSEENGDALVVHLAEDDQGLAAGQFAAFYSE 426 Query: 371 DSNEARVLGGGII 383 + LG GII Sbjct: 427 NV----CLGSGII 435 >gi|256390508|ref|YP_003112072.1| tRNA-specific 2-thiouridylase MnmA [Catenulispora acidiphila DSM 44928] gi|256356734|gb|ACU70231.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Catenulispora acidiphila DSM 44928] Length = 358 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 136/374 (36%), Positives = 195/374 (52%), Gaps = 22/374 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRV 79 MRV+ AMSGGVDS+V AA ++ G++V GV L L +R+A CC +D +DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARVRDAGHEVTGVHLALSRNRQALRDGARGCCTIEDSHDARRA 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + Y++D +RF VI F + Y AG TP PC+ CN +KF+ +L R LG D Sbjct: 61 ADMLGIPFYIWDMSDRFHEDVIDDFVAEYQAGRTPNPCLRCNEKIKFAAVLDKARALGFD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 V+ATGHY R DG + R D +DQSY L QL FPLGD K + Sbjct: 121 VVATGHYARLL-----DGPHGPELHRAADPAKDQSYVLGVLDADQLAHSLFPLGDDTKPA 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A E GL +A K DS D+CF+ G + + + G IV G+ +G H+G Sbjct: 176 VRAEAAERGLYVAKKPDSHDVCFIPDGDTKAYLAKTLGTSS--GPIVDSEGRRVGEHDGA 233 Query: 260 INYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 +TIGQRRGL + G P +V+ + ++ V VG E L+V + ++ W G Sbjct: 234 WGFTIGQRRGLRIGDPAGDGRPRYVLDISPVTNTVTVGTAEELDVTGLSGIKLRWCGPEF 293 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNE 374 + +C ++R+ +PVP +R+ D + V + G+A GQA V Y Sbjct: 294 -----IGRIECHAQLRAHGEPVPATAERSGPDSIDVVLHEPVRGLAPGQAAVLYDG---- 344 Query: 375 ARVLGGGIISGSKR 388 RV+G ++ + R Sbjct: 345 TRVIGSATVAQTSR 358 >gi|255690530|ref|ZP_05414205.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides finegoldii DSM 17565] gi|260623984|gb|EEX46855.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides finegoldii DSM 17565] Length = 361 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 114/374 (30%), Positives = 182/374 (48%), Gaps = 33/374 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV+V MSGG+DS+ +L+ GY+++GVT++++ DAR Sbjct: 4 RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + HYV D F+ ++ F Y G TP PCV CN KF L +L Sbjct: 50 LAARMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLDC 109 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R ++ + D ++DQSYFL+ Q L FPLG K Sbjct: 110 DWIATGHYSRL-----EEKNGHIYIIAGDDDKKDQSYFLWRLGQDVLRRCIFPLGAYTKI 164 Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILG 254 VR+ E G + + +S ++CF+ +G Y D ++ + G V+ G LG Sbjct: 165 KVREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDSEIGPGWFVNSEGVKLG 223 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +H G YTIGQR+GL +A+G+P +V+ ++ + V++G E L+ + + Sbjct: 224 QHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKTDYMLAEQ----DKI 279 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + E + V+IR P+ V+R +DG + V F ++ +A GQ+ VFY Sbjct: 280 VDEQELFQCENLTVRIRYRSRPLACRVRRLEDGRLLVRFLETASAIAPGQSAVFYDG--- 336 Query: 374 EARVLGGGIISGSK 387 RVLGG I+ + Sbjct: 337 -KRVLGGAFIASQR 349 >gi|38233668|ref|NP_939435.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium diphtheriae NCTC 13129] gi|73920122|sp|Q6NHQ7|MNMA_CORDI RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|38199929|emb|CAE49597.1| probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium diphtheriae] Length = 366 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 145/377 (38%), Positives = 200/377 (53%), Gaps = 19/377 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79 MRV+ AMSGGVDS+V AA G+DV+GV L L + + CC+ +D DARRV Sbjct: 1 MRVLAAMSGGVDSAVAAARAVAAGHDVVGVHLALSQDPQTVRESSRGCCSLEDSADARRV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + + YV+D+ +RF+ VI F SSY AGETP PC+ CN +KF+ LL LG D Sbjct: 61 CDKLGIPFYVWDFSDRFKEDVIDDFISSYEAGETPNPCLRCNEKIKFAALLERGIALGFD 120 Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + TGHY R ++ G DG + R +D ++DQSY L ++ FP+GD K Sbjct: 121 AVVTGHYARLTQPVDGGDG----YLRRSIDPDKDQSYVLGVLGAHEIAHCMFPVGDTVKP 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R+ A MG +A K DS DICF+ G + R G IV +G L H+G Sbjct: 177 KIREEAAAMGFSVAKKPDSYDICFIPDGNTQAFLGRHIGL--RPGMIVDSDGNELKEHDG 234 Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 NYTIGQR+GL + A G+P +V +D + V VG RE+L+V + + +L Sbjct: 235 AWNYTIGQRKGLDIKQPAADGKPRYVTNIDAATGTVTVGSRENLKVIALTADRLKYLH-- 292 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSDS 372 A+ F+ V++R+ V V N DD + V+ GVA GQA V Y D Sbjct: 293 ---PAMTGSFEAEVQVRAHGSVVACSVMVNESDDTMRVELHTPLSGVARGQAAVIYLPDD 349 Query: 373 NEARVLGGGIISGSKRS 389 + VLG G I ++ Sbjct: 350 DGDIVLGSGTICATEHQ 366 >gi|218192183|gb|EEC74610.1| hypothetical protein OsI_10221 [Oryza sativa Indica Group] Length = 488 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 122/373 (32%), Positives = 179/373 (47%), Gaps = 20/373 (5%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +RV V +SGGVDSSV LL G+ L+++ C D+ A+ V Sbjct: 77 PLRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIWFQEDFRNFWSECPWDDDLKYAQAV 136 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD I+V V + + N V+ + Y +G TP P V CN +KF L LG D Sbjct: 137 CDKIDVPLEVVHLSDEYWNHVVSHIINEYRSGRTPNPDVLCNTRIKFGAFLEAIENLGFD 196 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +A+GHY DD + ++ D +DQ+YFL +Q QL L FPLG + K+ Sbjct: 197 YIASGHYAHVVHPSPDDVEGPSVLQLSKDKVKDQTYFLSHLSQTQLRRLLFPLGCITKDE 256 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258 VR LA +M L D+ DSQ ICF+ + K+ + V+R +EG ++ G LG H G Sbjct: 257 VRRLAAQMDLPNQDRKDSQGICFLGKVKFSEFVERQIGE--MEGVLLEAETGDYLGTHRG 314 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHR--IYLREINWLGDGL 315 YTIGQR+GL + G P +VV D ++ V V SL+ R + +NW + Sbjct: 315 FWFYTIGQRQGLRLPGG-PWYVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFSNS- 372 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR---NDDGV--YVDFEKSEVGVASGQACVFYTS 370 + + K+R S + V + +++GV V + + G+A+GQ FY Sbjct: 373 ---GPTNNEQLKCKVRHSPEFHDCTVTQEQTSENGVILVVRLSEDDQGLAAGQFAAFYRD 429 Query: 371 DSNEARVLGGGII 383 + LG GII Sbjct: 430 N----LCLGSGII 438 >gi|328794279|ref|XP_003252036.1| PREDICTED: tRNA-specific 2-thiouridylase mnmA-like, partial [Apis mellifera] Length = 319 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 108/370 (29%), Positives = 158/370 (42%), Gaps = 65/370 (17%) Query: 31 VDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVF 90 VDSSV A LLK GYDVIGV ++ ++ + G C A D D +RV D I + +Y Sbjct: 1 VDSSVSALLLKEQGYDVIGVFMKNWDDTDDT---GVCTATDDYEDVKRVADQIGIPYYSI 57 Query: 91 DYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSR 150 ++E+ + + V F + Y G TP P V CN +KF L L AD +A GHY ++ Sbjct: 58 NFEKEYWHRVFEYFLNEYKKGRTPNPDVMCNSQIKFKSFLEFALNLDADYIAMGHYAKTI 117 Query: 151 LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLD 210 D M RP D +DQ+YFL Q Q+ + FPL ++ K Sbjct: 118 T----DKNGITHMMRPKDGNKDQTYFLSQLNQNQISRVIFPLANLTKP------------ 161 Query: 211 IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGL 270 GD+V +G+++G H G++ YTIGQR GL Sbjct: 162 ------------------------------QSGDMVTPDGKVVGHHAGLMYYTIGQRSGL 191 Query: 271 GVAMGE----PLFVVYLDKNSSRVIVGPRES---LEVHRIYLREINWLGDGLFEDAVVDG 323 G+ + P FVV + +++IV L + ++++ D Sbjct: 192 GLGSTKESTAPWFVVGKNLQKNQLIVQQGYDSKLLYATELEASDMSFFTGQPDHDF---K 248 Query: 324 FKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 C K R Q V V V + + V F++ V GQA V Y + LGGG Sbjct: 249 IHCSAKFRYRQPDVGVTVSYDAAKNKAKVYFDEPARAVTPGQALVLYQGE----ECLGGG 304 Query: 382 IISGSKRSDA 391 I + ++D Sbjct: 305 NIDCAYQNDR 314 >gi|56808669|ref|ZP_00366393.1| COG0482: Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Streptococcus pyogenes M49 591] Length = 299 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 110/301 (36%), Positives = 162/301 (53%), Gaps = 17/301 (5%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 + +RVVV MSGGVDSSV A LLK GYDVIGV ++ ++ + G C A +D D Sbjct: 8 DNSKIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDD---TDEFGVCTATEDYKDV 64 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L L Sbjct: 65 AAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTL 124 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GAD +ATGHY + + D M R D +DQ+YFL +Q+QL FPLG ++ Sbjct: 125 GADYVATGHYAQVKR----DENGTVHMLRGADNGKDQTYFLSQLSQEQLQKTLFPLGHLQ 180 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR++A GL A K DS ICF+ + + + + A +G ++ ++G+ +G H Sbjct: 181 KSEVREIAERAGLATAKKKDSTGICFIGEKNFKQFLSQYLP--AQKGRMMTIDGRDMGEH 238 Query: 257 NGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREI 308 G++ YTIGQR GLG+ +P F V D + + + VG E+L + + I Sbjct: 239 AGLMYYTIGQRGGLGIGGQHGGDNQPWFAVGKDLSQNILYVGQGFYHEALMPNSLDASAI 298 Query: 309 N 309 + Sbjct: 299 H 299 >gi|159903879|ref|YP_001551223.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str. MIT 9211] gi|205816902|sp|A9BBQ7|MNMA_PROM4 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|159889055|gb|ABX09269.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus str. MIT 9211] Length = 406 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 134/380 (35%), Positives = 200/380 (52%), Gaps = 36/380 (9%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + V +SGGVDSS+ AALL G+ V G+TL L + KGSCC + + DA +C+ Sbjct: 39 IAVGLSGGVDSSLTAALLVEAGWKVEGLTLWLM------EGKGSCCT-EGLVDAAGICEQ 91 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVL 141 + + H+V D F+ V+ + Y G TPLPC CNR VKFS +++ R+ + Sbjct: 92 LKIPHHVVDERSTFQKEVVENLVNGYQEGITPLPCSRCNRFVKFSPMINWARKNRNLKRI 151 Query: 142 ATGHYIR------SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 ATGHY R ++L D+ K R + R +D +DQSYFL+ +Q+ L + FPLG + Sbjct: 152 ATGHYARIKHAETNKLNSLDERKNRHQLLRGIDQNKDQSYFLYDLSQEILGHVVFPLGAL 211 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQILG 254 K R A GL A+K +SQD+C + G + +G+IV +G ++G Sbjct: 212 TKSFTRKEANRYGLRTANKKESQDLCLAEKHGSMKAFLNNYLP--PRKGEIVLTDGLVVG 269 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H+GI ++TIGQR+GLG+A EPL V+ + + +RVIVGPR+ + E+NW+ Sbjct: 270 EHDGIEHFTIGQRKGLGIAWKEPLHVINIQPSLNRVIVGPRDQSGRSNCTVGEVNWVSIS 329 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-----------DGVYVDFEKSEVGVASGQ 363 A + V++R DPV + + ++FE + ++ GQ Sbjct: 330 ----APMQERLVEVQVRYRSDPVKAKLVPIEPTIKDIKNNRPHRCRIEFENPQFSISPGQ 385 Query: 364 ACVFYTSDSNEARVLGGGII 383 A VFY + VLGGGII Sbjct: 386 AAVFYKGEV----VLGGGII 401 >gi|253570358|ref|ZP_04847767.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 1_1_6] gi|205814939|sp|Q8A0Y3|MNMA3_BACTN RecName: Full=tRNA-specific 2-thiouridylase mnmA 3 gi|251840739|gb|EES68821.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 1_1_6] Length = 362 Score = 388 bits (997), Expect = e-105, Method: Composition-based stats. Identities = 118/374 (31%), Positives = 182/374 (48%), Gaps = 33/374 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV+V MSGG+DS+ +L+ GY+++GVT++++ DAR Sbjct: 4 RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + HYV D F+ ++ F Y G TP PCV CN KF L +L Sbjct: 50 LAARMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLAEWADKLDC 109 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R G + D ++DQSYFL+ Q L FPLGD K Sbjct: 110 AYIATGHYSRLEERSG-----HIYIVAGDDDKKDQSYFLWRLGQDILKRCIFPLGDYTKI 164 Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILG 254 VR+ E G + + +S ++CF+ QG Y D ++ + G V+ G LG Sbjct: 165 KVREYLAEKGYEAKSKEGESMEVCFI-QGDYRDFLREQCPELDTEIGPGWFVNSEGVKLG 223 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +H G YTIGQR+GL +A+G+P +V+ ++ + V++G E L+ + + Sbjct: 224 QHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLQTEYMLAEQ----DRI 279 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + E + V+IR P+P V+R +DG + V F ++ VA GQ+ VFY Sbjct: 280 VDEQELFSCENLAVRIRYRSRPIPCRVKRLEDGRLLVRFRETASAVAPGQSAVFYDG--- 336 Query: 374 EARVLGGGIISGSK 387 RVLGG I+ + Sbjct: 337 -RRVLGGAFIASQR 349 >gi|91085987|ref|XP_972131.1| PREDICTED: similar to tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Tribolium castaneum] Length = 417 Score = 387 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 117/374 (31%), Positives = 182/374 (48%), Gaps = 20/374 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VVV +SGGVDS+V A LLK+ GYD+ GV +Q ++ KG C A D DA VCD Sbjct: 6 KVVVGISGGVDSAVAALLLKKRGYDIQGVFMQNWDIAD---EKGYCSADADYKDAALVCD 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140 +++ ++ + + N V Y G TP P V CNR +KF+ R +LGAD Sbjct: 63 KLDIKLTHVNFVKHYWNEVFSNLIKEYETGNTPNPDVLCNRNIKFNYFYKYARNELGADA 122 Query: 141 LATGHYIRS---RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 +ATGHY R+ + ++ + +D +DQ++FL Q+ L FPLGD+ K Sbjct: 123 IATGHYARTSFGSYLEHYNPEKGVRLLNAVDWFKDQTFFLCQVNQEALQRTMFPLGDLMK 182 Query: 198 ESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGR 255 V+ +ARE GL+ IA K +S ICF+ K+ D ++ GD V ++ +++G+ Sbjct: 183 PEVKKIARENGLEKIARKKESMGICFIGNRKFQDFIREYIDD--KPGDFVDVDTAKVVGQ 240 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLG 312 HNG+ +T+GQR L P FV D + + + V L + I E +W+ Sbjct: 241 HNGVHQWTLGQRARLHSYES-PYFVARKDVDKNIIYVVKGTKHPLLYTNIILTSEPHWIH 299 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 D +C K + ++ V V + G+ + + + + GQ V S Sbjct: 300 SQPP-DLQNGVLECDFKFQHTKYWVKCQVCQTSKGLIIKVNRYKRAITPGQFAVL----S 354 Query: 373 NEARVLGGGIISGS 386 + LGG I + Sbjct: 355 KDGECLGGARIINT 368 >gi|108798844|ref|YP_639041.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium sp. MCS] gi|119867959|ref|YP_937911.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium sp. KMS] gi|123179026|sp|Q1BAU9|MNMA_MYCSS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|166235067|sp|A1UE63|MNMA_MYCSK RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|108769263|gb|ABG07985.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium sp. MCS] gi|119694048|gb|ABL91121.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium sp. KMS] Length = 359 Score = 387 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 146/372 (39%), Positives = 195/372 (52%), Gaps = 22/372 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+VAMSGGVDSSV AA + G+DV+GV L L ++ + R GS CC+ +D DARR Sbjct: 1 MRVLVAMSGGVDSSVAAARMVDAGHDVVGVHLAL-SATPGTLRTGSRGCCSKEDAGDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D +++ YV+D+ +RF+ VI F +SY GETP PCV CN +KFS L LG Sbjct: 60 VADVLDIPFYVWDFADRFKEDVIDDFVASYERGETPNPCVRCNEKIKFSALAGRALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY R DG+ + R +D ++DQSY L T QQL FP+GD K Sbjct: 120 DALATGHYARLS-----DGR----LRRAVDADKDQSYVLAVLTAQQLRHAVFPIGDTPKA 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R A E GL +ADK DS DICF+ G + G +V G L H G Sbjct: 171 QIRAEAAERGLAVADKPDSHDICFIPSGDTRAFLGARIG--VRRGAVVDAGGTKLAEHEG 228 Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 + +TIGQR+GLG+A G+P +V +D + V VG E L+V R+ + Sbjct: 229 VHGFTIGQRKGLGIAGPGPDGQPRYVTGIDAATGTVRVGGAEDLDVWRLTGERPVFTSGA 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 F V +C V++R+ + + V+ GVA+GQ V Y D Sbjct: 289 AFGGPV----ECQVQVRAHGGLADAVASHDAGVLSVELRAPLRGVAAGQTMVIYRPDPEG 344 Query: 375 ARVLGGGIISGS 386 VL ISG+ Sbjct: 345 DEVLASATISGA 356 >gi|71893779|ref|YP_279225.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma hyopneumoniae J] gi|123645587|sp|Q4A9Q7|MNMA_MYCHJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|205822182|sp|Q600M2|MNMA_MYCH2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71851906|gb|AAZ44514.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase [Mycoplasma hyopneumoniae J] gi|312601389|gb|ADQ90644.1| tRNA-specific 2-thiouridylase mnmA [Mycoplasma hyopneumoniae 168] Length = 372 Score = 387 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 117/390 (30%), Positives = 199/390 (51%), Gaps = 36/390 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--------CCAGQDV 73 ++VV +SGGVDS+V A LLK+ G++VI V ++ ++S + G C QD Sbjct: 3 KIVVGLSGGVDSAVSAYLLKKAGHNVIAVFMRNWDSSLNNDFLGKKNEKNFTICPQEQDW 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ V +N+ + D+ + + + V Y +G TP P + CN+ +KF L Sbjct: 63 LDAKVVAKQLNIPIFRIDFIKEYWDEVFSDLILKYQSGLTPNPDILCNKNIKFKHFLDYA 122 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 ++ AD +A GHY ++ D+G + D +DQSYFL ++ QL FPL Sbjct: 123 QKVHNADFIAMGHYAKT-----DNGN----LYAGADSLKDQSYFLGQLSKSQLQKTIFPL 173 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQ 251 G++ K VR +A E+GL A K DS ICF+ + K+ D ++ A G+I+ + + Sbjct: 174 GNLHKSEVRKIANELGLINAKKKDSTGICFIGERKFTDFLQNYIP--AQPGNIIDISTKK 231 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 +LG+H GI+ +TIGQR+G G+ M EP FVV + + V P ++ LE + + Sbjct: 232 VLGKHIGIMYFTIGQRKGFGLSGMKEPYFVVGHNLKEKILYVSPQSEKKWLESDSLMAKN 291 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366 N+L + + K R Q+ +P+ +++ D+ ++ ++K + + GQ V Sbjct: 292 ANFLSENF-----RNLDNLSAKFRYRQEAIPIKIEKIQDNSFWISYQKYQ-AITPGQQVV 345 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396 Y ++ +V+ G I+ R+ + L Sbjct: 346 IY----HQNQVILAGEIALLFRNGKKLDYL 371 >gi|54020202|ref|YP_115943.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma hyopneumoniae 232] gi|53987375|gb|AAV27576.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase [Mycoplasma hyopneumoniae 232] Length = 387 Score = 387 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 117/390 (30%), Positives = 199/390 (51%), Gaps = 36/390 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--------CCAGQDV 73 ++VV +SGGVDS+V A LLK+ G++VI V ++ ++S + G C QD Sbjct: 18 KIVVGLSGGVDSAVSAYLLKKAGHNVIAVFMRNWDSSLNNDFLGKKNEKNFTICPQEQDW 77 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ V +N+ + D+ + + + V Y +G TP P + CN+ +KF L Sbjct: 78 LDAKVVAKQLNIPIFRIDFIKEYWDEVFSDLILKYQSGLTPNPDILCNKNIKFKHFLDYA 137 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 ++ AD +A GHY ++ D+G + D +DQSYFL ++ QL FPL Sbjct: 138 QKVHNADFIAMGHYAKT-----DNGN----LYAGADSLKDQSYFLGQLSKSQLQKTIFPL 188 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQ 251 G++ K VR +A E+GL A K DS ICF+ + K+ D ++ A G+I+ + + Sbjct: 189 GNLHKSEVRKIANELGLINAKKKDSTGICFIGERKFTDFLQNYIP--AQPGNIIDISTKK 246 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 +LG+H GI+ +TIGQR+G G+ M EP FVV + + V P ++ LE + + Sbjct: 247 VLGKHIGIMYFTIGQRKGFGLSGMKEPYFVVGHNLKEKILYVSPQSEKKWLESDSLMAKN 306 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366 N+L + + K R Q+ +P+ +++ D+ ++ ++K + + GQ V Sbjct: 307 ANFLSENF-----RNLDNLSAKFRYRQEAIPIKIEKIQDNSFWISYQKYQ-AITPGQQVV 360 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396 Y ++ +V+ G I+ R+ + L Sbjct: 361 IY----HQNQVILAGEIALLFRNGKKLDYL 386 >gi|329957309|ref|ZP_08297829.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides clarus YIT 12056] gi|328523022|gb|EGF50125.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides clarus YIT 12056] Length = 388 Score = 387 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 124/391 (31%), Positives = 196/391 (50%), Gaps = 35/391 (8%) Query: 2 VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61 V +A +N +++K + RV+V MSGG+DS+ +L+ GY++IG+T+ ++ Sbjct: 22 VFLQAKTMNIREMNKI--EKRVLVGMSGGIDSTATCLMLQEQGYEIIGLTMWVWGDEPLE 79 Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 AR++ ++ + H+V D E FRN ++ F Y G TP PCV CN Sbjct: 80 --------------ARQLARSMGIEHHVADEREAFRNVIVRNFIDEYRQGRTPNPCVMCN 125 Query: 122 RTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATT 181 KF +L +ATGHY R ++ + + D ++DQSYFL+ Sbjct: 126 PLFKFRIFTEWADKLNCRYIATGHYTRL-----EELNGKIYIVAGDDEKKDQSYFLWKLG 180 Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGI- 239 Q L FPLG K VRD R+ G + A++ +S ++CF+ +G Y D ++ + I Sbjct: 181 QDVLRRCLFPLGAYTKLQVRDYLRDKGYTLKAEEGESMEVCFI-KGDYRDFLREHSPEID 239 Query: 240 --ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES 297 G V+ G LG H G YTIGQR+GL +A+G+P +V+ ++ + V++G E Sbjct: 240 DEVGPGWFVNSEGVKLGEHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQ 299 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSE 356 L+ + + N + +G V+ V+IR PVP V+R +DG + V FE Sbjct: 300 LKAEYMLAEQDNLIDEG----EVLGSSGLTVRIRYRSKPVPCSVKRLEDGRLLVHFEAEA 355 Query: 357 VGVASGQACVFYTSDSNEARVLGGGIISGSK 387 +A GQ+ VFY RV GG I+ + Sbjct: 356 SAIAPGQSAVFYIG----KRVAGGSFIASQR 382 >gi|194337468|ref|YP_002019262.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pelodictyon phaeoclathratiforme BU-1] gi|194309945|gb|ACF44645.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Pelodictyon phaeoclathratiforme BU-1] Length = 361 Score = 387 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 133/370 (35%), Positives = 190/370 (51%), Gaps = 25/370 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARR 78 +VVV +SGGVDS+V A LL GY V G+ +++ ++ S + S D D + Sbjct: 4 QKKVVVGISGGVDSAVSACLLVEQGYAVTGLNIRVLDAPDESPSLRPSPLVISDHPDFQ- 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + +FR+ VI F Y G TP PC+ CN+ +K+ L R L A Sbjct: 63 ------IPVLSLNLSRKFRDEVIGYFHEDYLGGRTPNPCMVCNKKIKWFGLFEGLRLLDA 116 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGH+ + G R + + D E+DQSYFL+ +Q L FPLG++ K Sbjct: 117 DFVATGHFAATSFSEG-----RYRLYKGADPEKDQSYFLWMLSQGDLARTLFPLGELTKP 171 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQILGR 255 VR LAR G+ A+K +SQ+ICFV Q Y + G+A +GDIV +G+++G+ Sbjct: 172 EVRALARSFGVRAAEKRESQEICFVPQDDYCGYLASAIPGLAERVADGDIVDESGRVIGK 231 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H G YTIGQRRGLGV+ EPL+V LD +R+ VG + SLE + IN +G Sbjct: 232 HRGYPFYTIGQRRGLGVSAKEPLYVTALDTEQNRIEVGKKSSLECSSLVASGINLIGM-- 289 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 + + + KIR P ++ ++ V F + VA GQA VFY Sbjct: 290 --ERPNIPIEAYGKIRYRDRETPCTLEPFGENSATVSFSTPKSAVAKGQAAVFYRD---- 343 Query: 375 ARVLGGGIIS 384 VLGGG I+ Sbjct: 344 REVLGGGFIT 353 >gi|116671273|ref|YP_832206.1| tRNA-specific 2-thiouridylase MnmA [Arthrobacter sp. FB24] gi|166234843|sp|A0JYI6|MNMA_ARTS2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|116611382|gb|ABK04106.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arthrobacter sp. FB24] Length = 379 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 145/389 (37%), Positives = 194/389 (49%), Gaps = 27/389 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV+GV L L + + R GS CC +D DA R Sbjct: 1 MRVLAAMSGGVDSAVAAARAVEAGHDVVGVHLAL-SRMPGTLRTGSRGCCTIEDSRDAWR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 CD + + +YV+D+ ERF+ V+ F YAAG TP PC+ CN +KF+ LL LG Sbjct: 60 ACDVLGIPYYVWDFSERFKEDVVQDFIDEYAAGRTPNPCMRCNERIKFAALLEKAIALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197 D + TGHY + V D + R D +DQSY L T +QL FPL D K Sbjct: 120 DAVCTGHYAK----VITDADGNPELHRAADWAKDQSYVLGVLTHEQLKHSMFPLADTPSK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR A GL +A+K DS DICF+ G + GDIV G +G H Sbjct: 176 AEVRAEAERRGLSVANKPDSHDICFIPDGDTAGWLAEKIEMTT--GDIVDEAGTKVGEHP 233 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G +T+GQRRGL + G+P FV+ + ++V+VGP L + I +++W G Sbjct: 234 GANAFTVGQRRGLKLGTPAADGKPRFVLEIRPKENKVVVGPEALLAIDEIRGIKVSWAGL 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR----NDDGVY-----VDFEKSEVGVASGQA 364 + E A D F C ++R+ DPVP + +DDG V GVA GQ Sbjct: 294 PIAEVATGDEFDCHAQVRAHGDPVPATARMERLTDDDGAERTNLVVTLATPLRGVAPGQT 353 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVE 393 V Y +RVLG I ++ Sbjct: 354 VVLYQG----SRVLGQATIDTARSLQRAA 378 >gi|195162397|ref|XP_002022042.1| GL14198 [Drosophila persimilis] gi|194103940|gb|EDW25983.1| GL14198 [Drosophila persimilis] Length = 387 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 119/377 (31%), Positives = 179/377 (47%), Gaps = 25/377 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 +VV MSGGVDS+V A LLK G+ V+GV ++ ++ G C QD+ DA C Sbjct: 5 IVVGMSGGVDSAVSAHLLKERGHRVMGVFMRNWDEHD---EAGRCSGEQDLKDAEWACQR 61 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVL 141 + + +Y + + AV F Y G TP P + CNR +KF +LG D + Sbjct: 62 LGIELRQVNYVKEYWTAVFSAFLDDYQQGLTPNPDILCNRHIKFDLFHRHALDKLGYDAV 121 Query: 142 ATGHYIRSRL-----YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 ATGHY R+ L + D G+ R + P D +DQ++FL +Q L FPLGD+ Sbjct: 122 ATGHYARNSLGNFLEHRADGGEAR--LLIPADTFKDQTFFLAGIPRQALQRTMFPLGDLA 179 Query: 197 KESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILG 254 K V+ LAR +GL +A K +S ICFV + + ++ A + G V ++ G I+G Sbjct: 180 KNEVKLLARRIGLQRLAHKRESTGICFVGKRDFKSFIREYIA--SKSGQFVDIDSGAIVG 237 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWL 311 H GI +T+GQR LG + +P FV + +S+ + V +L I++ NWL Sbjct: 238 SHEGIHQWTVGQRCRLGSFL-QPYFVARKEASSNTIYVAAGHEHPALLSTCIHIEAPNWL 296 Query: 312 G-DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 A +C + + ++ V ++ D G V + + GQ VFY Sbjct: 297 CVQSQQRLASAGSLRCRFRFQHTKPLVDCCLRSCPDGGFEVLLDMPLRAITPGQYAVFYD 356 Query: 370 SDSNEARVLGGGIISGS 386 LG G I + Sbjct: 357 D----VACLGAGRIMSA 369 >gi|254442923|ref|ZP_05056399.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Verrucomicrobiae bacterium DG1235] gi|198257231|gb|EDY81539.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Verrucomicrobiae bacterium DG1235] Length = 360 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 111/374 (29%), Positives = 182/374 (48%), Gaps = 26/374 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +++VAMSGGVDS+V A LLK G+ + G ++ + + + G C QD+ DA V Sbjct: 2 KKILVAMSGGVDSAVAALLLKEQGHAIEGAYMKNWINED--EILGDCPWQQDIEDAAAVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + V + + +R+ ++ + Y +G TP P V CNR +KF L + G D Sbjct: 60 EALGIPFRVVNLMQEYRSRIVDYLLAGYQSGITPNPDVMCNREIKFGVFLDYALENGFDE 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + R + + R + D +DQ+YFL Q+ RFP+G + K + Sbjct: 120 VATGHYAQIR----ETEDQPRAIIEGADPNKDQTYFLAKMRADQVARARFPVGHLLKPEL 175 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259 R+LA+ L A K DSQ ICF+ K D ++ G I+ + Q LG+H G+ Sbjct: 176 RELAQTASLPNAKKKDSQGICFIGNIKMSDFLREYVPD--RPGPIIRADDDQTLGQHRGL 233 Query: 260 INYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVG----PRESLEVHRIYLREINWLG 312 +TIGQRRG+G+ E VV D + ++V L R + +++ G Sbjct: 234 HYFTIGQRRGIGIPSNTDNEFYVVVGKDIQRNALLVSFEAPTAPGLYSSRCEISSLSYTG 293 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 + +D + K+R V + R + + + V F++ + +A GQ FY Sbjct: 294 EPFPDD-----CRIEAKVRYRDPRVAITCHRLSPETIEVTFDQPQRALALGQIIAFYRG- 347 Query: 372 SNEARVLGGGIISG 385 ++LGGG+ + Sbjct: 348 ---PQLLGGGVYTK 358 >gi|72080763|ref|YP_287821.1| tRNA-specific 2-thiouridylase MnmA [Mycoplasma hyopneumoniae 7448] gi|123644877|sp|Q4A7U1|MNMA_MYCH7 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71913887|gb|AAZ53798.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase [Mycoplasma hyopneumoniae 7448] Length = 372 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 117/390 (30%), Positives = 199/390 (51%), Gaps = 36/390 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--------CCAGQDV 73 ++VV +SGGVDS+V A LLK+ G++VI V ++ ++S + G C QD Sbjct: 3 KIVVGLSGGVDSAVSAYLLKKAGHNVIAVFMRNWDSSLNNDFLGKKNEKNFTICPQEQDW 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ V +N+ + D+ + + + V Y +G TP P + CN+ +KF L Sbjct: 63 LDAKVVAKQLNIPIFRIDFIKEYWDEVFSDLILKYQSGLTPNPDILCNKNIKFKHFLDYA 122 Query: 134 RQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 ++ AD +A GHY ++ D+G + D +DQSYFL ++ QL FPL Sbjct: 123 QKVHNADFIAMGHYAKT-----DNGN----LYAGADSLKDQSYFLGQLSKSQLQKTIFPL 173 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQ 251 G++ K VR +A E+GL A K DS ICF+ + K+ D ++ A G+I+ + + Sbjct: 174 GNLLKSEVRKIANELGLINAKKKDSTGICFIGERKFTDFLQNYIP--AQPGNIIDISTKK 231 Query: 252 ILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLRE 307 +LG+H GI+ +TIGQR+G G+ M EP FVV + + V P ++ LE + + Sbjct: 232 VLGKHIGIMYFTIGQRKGFGLSGMKEPYFVVGHNLKEKILYVSPQSEKKWLESDSLMAKN 291 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACV 366 N+L + + K R Q+ +P+ +++ D+ ++ ++K + + GQ V Sbjct: 292 ANFLSENF-----RNLDNLSAKFRYRQEAIPIRIEKIQDNSFWISYQKYQ-AITPGQQVV 345 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEESL 396 Y ++ +V+ G I+ R+ + L Sbjct: 346 IY----HQNQVILAGEIALLFRNGKKLDYL 371 >gi|242212937|ref|XP_002472299.1| predicted protein [Postia placenta Mad-698-R] gi|220728576|gb|EED82467.1| predicted protein [Postia placenta Mad-698-R] Length = 356 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 112/367 (30%), Positives = 170/367 (46%), Gaps = 21/367 (5%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSVVA LL YD+ V ++ +++R S C +D D +RVC +++ Sbjct: 1 MSGGVDSSVVAKLLAEQDYDLSAVFMRNWDTRDESGTDKGCEWEKDWEDVQRVCKMLDIP 60 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 + D +++ V P + G+TP P + CNR VKF L+ +ATGHY Sbjct: 61 CEMVDLSQQYWTRVFEPSLQLWEKGQTPNPDIWCNREVKFGALMDQLTGDDV-WVATGHY 119 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 + + + RP D +DQ+Y+L A + L FPL K VR +A++ Sbjct: 120 ADKSWFP------CKSLRRPRDRTKDQTYYLSAIPEASLARTIFPLAPFAKTEVRAMAKK 173 Query: 207 MGLDIADKSDSQDICFVQQGKYFD-VVKRINAGIALEGDIVHL-NGQILGRHNGIINYTI 264 L A +++S ICFV + + FD + + +G I+ L G+ LG H G+ YTI Sbjct: 174 WELPTAQRAESMGICFVGEKRRFDGFLSQYI--TPRQGPIIDLQTGKQLGTHTGLWTYTI 231 Query: 265 GQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVV 321 GQ L M E +FV D + + V P +L + W+ + Sbjct: 232 GQNARL-PGMPERMFVAKKDAERNEIYVVPSSTHPALYSRSLIASAWQWIWRDHPPGGID 290 Query: 322 D--GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 D GF V+ R P +QR +++ FE+ + VA GQ + D LG Sbjct: 291 DELGFHGRVQYRHRMLDAPATIQRRGHTIHITFEEPQQSVAPGQIAAVWDGD----WCLG 346 Query: 380 GGIISGS 386 GII+G+ Sbjct: 347 SGIITGT 353 >gi|160883140|ref|ZP_02064143.1| hypothetical protein BACOVA_01109 [Bacteroides ovatus ATCC 8483] gi|299148187|ref|ZP_07041249.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 3_1_23] gi|156111365|gb|EDO13110.1| hypothetical protein BACOVA_01109 [Bacteroides ovatus ATCC 8483] gi|298512948|gb|EFI36835.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 3_1_23] Length = 361 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 115/374 (30%), Positives = 183/374 (48%), Gaps = 33/374 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV+V MSGG+DS+ +L+ GY+++GVT++++ DAR Sbjct: 4 RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + HYV D F+ ++ F Y G TP PCV CN KF L +L Sbjct: 50 LAERMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R G+ + D ++DQSYFL+ Q L FPLGD K Sbjct: 110 AWVATGHYSRLEEKSGN-----IYIVAGDDDKKDQSYFLWRLGQDVLKRCIFPLGDYTKV 164 Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILG 254 VR+ E G + + +S ++CF+ +G Y D ++ + G V+ G LG Sbjct: 165 KVREYLAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDSEIGPGWFVNSEGVKLG 223 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +H G YTIGQR+GL +A+G+P +V+ ++ + V++G + LE + + Sbjct: 224 KHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGNADQLETEYMLAEQ----DKM 279 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + E + V+IR P+P V+R +DG + + F + +A GQ+ VFY Sbjct: 280 VDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLIRFLEIASAIAPGQSAVFYDG--- 336 Query: 374 EARVLGGGIISGSK 387 RVLGG I+ + Sbjct: 337 -KRVLGGAFIASQR 349 >gi|326529305|dbj|BAK01046.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 491 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 124/379 (32%), Positives = 175/379 (46%), Gaps = 26/379 (6%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +RV V +SGGVDSSV LL G+ L+++ C D+ A+ V Sbjct: 74 PLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFRNFWSECPWDDDLKYAQAV 133 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD I+V V + + N V+ S Y G TP P V CN +KF L LG D Sbjct: 134 CDKIDVPLEVVHLSDEYWNHVVSHMISEYRNGRTPNPDVLCNTRIKFGAFLEAIENLGFD 193 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +A+GHY ++ + ++ D +DQ+YFL +Q QL L FPLG + K+ Sbjct: 194 YIASGHYAHVVHPPVENAEGPSVLQLSKDEVKDQTYFLSHLSQSQLRRLLFPLGCITKDE 253 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258 VR LA +M L + DSQ ICF+ + K+ + V+ I EG ++ G LG H G Sbjct: 254 VRSLAVQMNLPNQARKDSQGICFLGKVKFSEFVQAHIGEI--EGILLEAETGDYLGTHRG 311 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHR--IYLREINWLGDGL 315 YTIGQR+GL ++ G P +VV D ++ V V SL+ R + +NW D Sbjct: 312 FWFYTIGQRQGLRLSGG-PWYVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFSDS- 369 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR-----------NDDGVYVDFEKSEVGVASGQA 364 D + K+R S D V R N D + V + + G+A+GQ Sbjct: 370 ---GPADNERLKCKVRHSPDFHNCTVTREQTEELVVNSNNGDVLAVRLSEDDQGLAAGQF 426 Query: 365 CVFYTSDSNEARVLGGGII 383 FY + LG GII Sbjct: 427 AAFYRD----SACLGSGII 441 >gi|161870410|ref|YP_001599582.1| tRNA-specific 2-thiouridylase MnmA [Neisseria meningitidis 053442] gi|161595963|gb|ABX73623.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Neisseria meningitidis 053442] Length = 334 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 105/346 (30%), Positives = 163/346 (47%), Gaps = 24/346 (6%) Query: 49 GVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSY 108 GV +Q + + C QD +DA V D I + + ++ ++++ V F Y Sbjct: 3 GVFMQNWEDDDNDE---YCSIKQDSFDAIAVADIIGIDIDIVNFAAQYKDKVFAYFLQEY 59 Query: 109 AAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMD 168 +AG TP P V CN +KF L GAD +ATGHY R + G + + +D Sbjct: 60 SAGRTPNPDVLCNAEIKFKCFLDYAVGQGADTIATGHYARKEVRNG-----VHYLLKGLD 114 Query: 169 LERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKY 228 +DQSYFL+ QL FPLG ++K VR LA E L A K DS ICF+ + + Sbjct: 115 RNKDQSYFLYRLKPFQLERAIFPLGGLEKPEVRRLAAEFNLPTAAKKDSTGICFIGERPF 174 Query: 229 FDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNS 287 + +++ G +V G+ +G H G++ YT+GQR+GLG+ GEP FV D Sbjct: 175 REFLQKYLPTDN--GKMVTPEGKTVGEHVGLMFYTLGQRKGLGIGGAGEPWFVAAKDLTK 232 Query: 288 SRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-R 343 + +IV L + + ++++ L E + C K R P ++ Sbjct: 233 NELIVVQGHDHPLLYTRSLVMNDLSFT---LPERPKAGRYTC--KTRYRMADAPCELRYL 287 Query: 344 NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389 +D+ + F++ + V GQ+ V Y D LGGGII + + Sbjct: 288 DDETAELVFDEPQWAVTPGQSAVLYDGDI----CLGGGIIQTTDKP 329 >gi|261749175|ref|YP_003256860.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497267|gb|ACX83717.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 394 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 116/405 (28%), Positives = 194/405 (47%), Gaps = 51/405 (12%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + RVVV +SGGVDSSV A LLK+ GY+VIG+ + ++ + C +D DA Sbjct: 2 QKKRVVVGLSGGVDSSVAALLLKKQGYEVIGLFMHNWDDSVFN----QCTWKEDSIDALL 57 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V +N+ V + ++ + ++I Y +G+TP P + CNR +KF+ L + LGA Sbjct: 58 VAKDLNIPFQVVEMKKEYEESIINYMFDGYRSGKTPNPDILCNREIKFNVFLKKSIDLGA 117 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY+ + + + K + D +DQSYFL TQ QL FPLG + K Sbjct: 118 DFIATGHYVNKKKIIKN-NKIIYRLLVGKDSNKDQSYFLCQLTQYQLKKSLFPLGSLTKN 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL---------- 248 VR +A + GL A K DSQ +CFV + + +++ +G+IV + Sbjct: 177 QVRKIAEKNGLCNAYKKDSQGLCFVGKIQLSRFLQK--KIFPKKGEIVMIDSNALMYHPK 234 Query: 249 -----------------------NGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLD 284 +G+++G H G +T GQR+G+ + + LFV+ D Sbjct: 235 KKSFLSKEEELFFLSKRKKYQKSDGKVIGYHQGAQFFTKGQRKGISIGGYKKALFVIETD 294 Query: 285 KNSSRVIVG---PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339 + V G L +++ ++I+W+ + + + + F +IR Q Sbjct: 295 IKENIVYTGMGKNHPGLYKKSLFIQEKDIHWIREDIALLN-GEKMEVFCRIRYRQPLQKA 353 Query: 340 FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + + +G++++FE + + GQ V+Y ++G GIIS Sbjct: 354 LLYKIKNGMFIEFEILQCAITEGQFAVWYLD----KELIGSGIIS 394 >gi|237719106|ref|ZP_04549587.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229451485|gb|EEO57276.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 361 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 113/374 (30%), Positives = 183/374 (48%), Gaps = 33/374 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV+V MSGG+DS+ +L+ GY+++GVT++++ DAR Sbjct: 4 RNKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + HYV D F+ ++ F Y G TP PCV CN KF L +L Sbjct: 50 LAERMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNC 109 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R ++ + D ++DQSYFL+ Q L FPLGD K Sbjct: 110 AWVATGHYSRL-----EEKNGNIYIVAGDDDKKDQSYFLWRLGQDVLKRCIFPLGDYTKV 164 Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILG 254 VR+ E G + + +S ++CF+ +G Y + ++ + G V+ G LG Sbjct: 165 KVREYLAEKGYEAKSKEGESMEVCFI-KGDYREFLREQCPELDSEIGPGWFVNSEGVKLG 223 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +H G YTIGQR+GL +A+G+P +V+ ++ + V++G + LE + + Sbjct: 224 KHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGNADQLETEYMLAEQ----DKM 279 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + E + V+IR P+P V+R +DG + + F + +A GQ+ VFY Sbjct: 280 VDERELFGCENLTVRIRYRSRPIPCRVKRLEDGRLLIRFLEIASAIAPGQSAVFYDG--- 336 Query: 374 EARVLGGGIISGSK 387 RVLGG I+ + Sbjct: 337 -KRVLGGAFIASQR 349 >gi|195130901|ref|XP_002009889.1| GI15611 [Drosophila mojavensis] gi|193908339|gb|EDW07206.1| GI15611 [Drosophila mojavensis] Length = 380 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 113/386 (29%), Positives = 184/386 (47%), Gaps = 26/386 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV +SGGVDS+V A LLK G++V+GV ++ ++ G C QD+ DA C Sbjct: 5 VVVGISGGVDSAVSAHLLKERGFNVLGVFMRNWDEHD---EAGRCSGEQDLKDAEWACRR 61 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVL 141 +N+ +Y +++ +V F Y G TP P + CN+ +KF Q L D + Sbjct: 62 LNIELRQVNYVKQYWTSVFSQFLDDYQQGLTPNPDILCNKHIKFDLFHQHALQTLQYDAI 121 Query: 142 ATGHYIRSRL-----YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 ATGHY R+ L + G + P D +DQ++FL Q L FPLG +K Sbjct: 122 ATGHYARNSLGDFLEHAGSQMTEDVRLLIPADTFKDQTFFLAGIAQAALRRTMFPLGGLK 181 Query: 197 KESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILG 254 K +V++LAR +GL +A+K +S ICFV + + ++ + G+ V ++ G+I+G Sbjct: 182 KTAVKELARRIGLQRLAEKRESTGICFVGKRDFKAFIREYI--TSKPGNFVDIDSGRIVG 239 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWL 311 H G+ +T+GQR L + +P FV D S+ + V +L RI++ +NWL Sbjct: 240 THEGVHQWTVGQRCRLSSYL-QPYFVARKDAASNIIYVAAGHEHPALHSTRIHIDAVNWL 298 Query: 312 GDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 + +G +C + + ++ V ++ V + + GQ VFY Sbjct: 299 CSRARQQLATEGSLRCRFRFQHTKPLVDCQLRP----FEVQLDAPLRAITPGQYAVFYDD 354 Query: 371 DSNEARVLGGGIISGSKRSDAVEESL 396 LG I + +E+ + Sbjct: 355 ----VACLGAARILHGEPLQCLEQQV 376 >gi|290957209|ref|YP_003488391.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Streptomyces scabiei 87.22] gi|260646735|emb|CBG69832.1| putative tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Streptomyces scabiei 87.22] Length = 376 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 144/388 (37%), Positives = 196/388 (50%), Gaps = 24/388 (6%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAG 70 ++ + P+ +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G CC Sbjct: 3 EIPQRPRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 61 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 +D DARR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 62 EDSRDARRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALL 121 Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 LG D + TGHY + V +DG R + R D+ +DQSY L +QL F Sbjct: 122 DKALALGFDAVCTGHYAQV--IVREDGT--RELHRASDMAKDQSYVLGVLDDRQLAHAMF 177 Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 PLGD K+ +R A GL +A K DS DICF+ G + EGDIV Sbjct: 178 PLGDTVTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLANRLGRS--EGDIVDE 235 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 +G +LG H G YTIGQR+GL + G+P +V+ + ++ V VGP SL+V + Sbjct: 236 SGTVLGTHEGAFGYTIGQRKGLRIGTPASDGKPRYVLDISPVNNTVTVGPASSLDVEALT 295 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 W G A ++R+ V + D + V F + GVA GQA Sbjct: 296 AIRPRWCG-----AAPTGPGTYTAQLRAHGGETEVRAEPVDGTLEVSFTEPVRGVAPGQA 350 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAV 392 V Y RV+G I+ + R+ A Sbjct: 351 IVLYDG----TRVVGSATIASTTRAGAA 374 >gi|78779771|ref|YP_397883.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus str. MIT 9312] gi|123768944|sp|Q319J8|MNMA_PROM9 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|78713270|gb|ABB50447.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus str. MIT 9312] Length = 385 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 136/376 (36%), Positives = 204/376 (54%), Gaps = 32/376 (8%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++V +SGGVDSS+ AALL G+DV G+TL L K +GSCC+ + + DA +C+ Sbjct: 26 IIVGLSGGVDSSLSAALLVESGWDVEGLTLWLM------KGQGSCCS-EGLVDAAGLCED 78 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVL 141 + ++H + D E F VI Y G TPLPC CN+ VKF ++L+ + + Sbjct: 79 LGINHKIIDSREIFEREVIKKTTEGYEKGFTPLPCSMCNKNVKFEEMLNYAINKKDFTHI 138 Query: 142 ATGHYIRSRLYVGDDG-------KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 ATGHY R + + + ++ R D +DQSYFL++ +Q+ L L FPLG+ Sbjct: 139 ATGHYARIKKSSYAETLDYKSFVFKDFLLLRGTDENKDQSYFLYSLSQEVLSRLVFPLGE 198 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQIL 253 MKKE R A +GL A K +SQD+C V+ Y + + I+ I EG+I+H+NG++L Sbjct: 199 MKKEETRKEALRLGLRTAQKPESQDLCLVEH--YGSMQRFIDKHIEPKEGEIIHVNGKVL 256 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G HNGI ++TIGQR+GLG+A EPL+V LD+ + V V + L + ++NW+ Sbjct: 257 GTHNGIHHFTIGQRKGLGIAWPEPLYVKSLDRVKNIVYVADKSDLFNREAIISKVNWVSI 316 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR------NDDGVYVDFEKSEVGVASGQACVF 367 + + +IR PV + + + FE+S+ V GQA VF Sbjct: 317 ----EEPKQEIEVEAQIRYRSHPVKGTLIPMKNSDNPANTFKLIFEESQSSVTPGQAAVF 372 Query: 368 YTSDSNEARVLGGGII 383 Y + +LGGG+I Sbjct: 373 YKGEI----LLGGGLI 384 >gi|218295964|ref|ZP_03496744.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermus aquaticus Y51MC23] gi|218243702|gb|EED10230.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermus aquaticus Y51MC23] Length = 371 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 136/370 (36%), Positives = 189/370 (51%), Gaps = 34/370 (9%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG-------SCCAGQDVYD 75 V+VAMSGGVDSSV A LLK GY+V+G ++ + + SCC Y+ Sbjct: 5 VLVAMSGGVDSSVSAYLLKEAGYEVVGAMMRFWPDLPPVSLETGAARAWESCCTPDAAYE 64 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 ARRV D + + Y+ DY E F A+I PF YA G TP PC CN VKF LL R+ Sbjct: 65 ARRVADLLGIPFYLLDYREVFEEAIIAPFLEDYARGRTPNPCARCNTFVKFGALLKQARR 124 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 LG D +ATGHY+R + R +D E+DQSYFL+ T ++ L L FP+G + Sbjct: 125 LGLDYVATGHYVRREGEA---------LLRGLDKEKDQSYFLWGTPKEALPHLLFPVGHL 175 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254 K+ VR +A+E GL A K +SQ++CFV G +K A G +V + G+++G Sbjct: 176 TKKEVRQIAQEAGLPTARKPESQNLCFVA-GDLKGFLKERLK--ARPGPLVDVLTGEVVG 232 Query: 255 RHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 +H G YT+GQR+GLG+ +VV LD + V VGP+E+ + N L + Sbjct: 233 QHEGASLYTLGQRKGLGLWKTHLERYVVGLDVERNVVYVGPKEAALWEGMEAEGENLLEE 292 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 E V R PV V+ + + + F V GQ+ FY + Sbjct: 293 LPEEVEVQV--------RYRTPPVRAVVESSSP-LCLRFLTPVFAVTPGQSAAFYRGE-- 341 Query: 374 EARVLGGGII 383 R+LGG +I Sbjct: 342 --RLLGGAVI 349 >gi|167970222|ref|ZP_02552499.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium tuberculosis H37Ra] Length = 367 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 139/372 (37%), Positives = 196/372 (52%), Gaps = 22/372 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+V+ AMSGGVDSSV AA + G++V+GV + L+ + + R GS CC+ +D DARR Sbjct: 1 MKVLAAMSGGVDSSVAAARMVDAGHEVVGVHMALW-TAPGTLRTGSRGCCSKEDAADARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ E+F+ VI F SSYA GETP PCV CN+ +KF+ L + LG Sbjct: 60 VADVLGIPFYVWDFAEKFKEDVINDFVSSYARGETPNPCVRCNQQIKFAALSARAVALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R + R +D ++DQSY L T QQL FP+GD K Sbjct: 120 DTVATGHYARLS---------GGRLRRAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKR 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R A GL +A+K DS DICF+ G + G +V +G +L H+G Sbjct: 171 QIRAEAARRGLAVANKPDSHDICFIPSGNTKAFLGERIG--VRRGVVVDADGVVLASHDG 228 Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 + +TIGQRRGLG+A G P +V +D +++ V VG L+V + R + Sbjct: 229 VHGFTIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTAGA 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 A C V++R+ + V + D ++V GVA GQ V Y D Sbjct: 289 ----APSGPVDCVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQTLVLYRPDPAG 344 Query: 375 ARVLGGGIISGS 386 VLG I+G+ Sbjct: 345 DEVLGSATIAGA 356 >gi|170109855|ref|XP_001886134.1| predicted protein [Laccaria bicolor S238N-H82] gi|164639064|gb|EDR03338.1| predicted protein [Laccaria bicolor S238N-H82] Length = 370 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 108/377 (28%), Positives = 179/377 (47%), Gaps = 22/377 (5%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LL + YD+ V ++ +++ S C +D D +RVC +++ Sbjct: 1 MSGGVDSSVAAFLLAQQDYDLSAVFMRNWDTGDESGTDKGCEWEKDWEDVQRVCKKLDLP 60 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT----RQLGADVLA 142 + D + + N V P + +G TP V CNR +KF LL +A Sbjct: 61 CQMIDLSQEYWNRVFEPSLKQWESGVTPNTDVWCNREIKFGALLERLPAPTTSNKKPWIA 120 Query: 143 TGHYIRSRLYVGDDGKR---RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 TGHY R + R + RP D +DQ+Y+L + +++ L FP+G ++K Sbjct: 121 TGHYARKSWSTTPNSPHTRPRPKLLRPSDRGKDQTYYLSSISEEGLSRALFPIGHLQKSE 180 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQG-KYFDVVKRINAGIALEGDIVH-LNGQILGRHN 257 VR+LAR+ L A++ DS ICFV + K+ + + G +V ++G+ L +H Sbjct: 181 VRELARKHQLHTAERPDSVGICFVGEKAKFSNFLSSYIP--PNPGPVVDQVSGKTLMQHA 238 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDG 314 G+ +T+G+ + M E +FV D+ S+ + V P E L + + + + W+ + Sbjct: 239 GLWTFTLGENARI-PGMKERMFVSSKDQLSNTIYVVPGSDHEDLYSNTLRVSDFTWIWND 297 Query: 315 --LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 + + GF+ + R VP V++ + G + V ++ E V GQ Y D Sbjct: 298 AIPPDLSTPQGFRVDLMHRYRMHSVPSTVRKAETGDLIVTADEPEKAVTPGQIAALYDGD 357 Query: 372 SNEARVLGGGIISGSKR 388 LG G+I + R Sbjct: 358 ----WCLGCGVIKSTSR 370 >gi|13357963|ref|NP_078237.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762343|ref|YP_001752485.1| tRNA-specific 2-thiouridylase MnmA [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920416|ref|ZP_02931735.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508565|ref|ZP_02958082.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701789|ref|ZP_02971467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|14195293|sp|Q9PQ88|MNMA_UREPA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|189040514|sp|B1AJ41|MNMA_UREP2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|11277497|pir||H82896 tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase UU402 [imported] - Ureaplasma urealyticum gi|6899388|gb|AAF30812.1|AE002137_11 tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827920|gb|ACA33182.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902858|gb|EDT49147.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182676011|gb|EDT87916.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701067|gb|EDU19349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 385 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 114/377 (30%), Positives = 186/377 (49%), Gaps = 33/377 (8%) Query: 26 AMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-------SRKASKRKGSCCAGQDVYDARR 78 +SGGVDSSV A LLK++GY+VIG+ + ++ + + +K C + D DA+ Sbjct: 12 GLSGGVDSSVSALLLKQEGYEVIGLFMSNWDTIANFENNHEFNKTHQGCESELDYQDAQA 71 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLG 137 V I + Y ++ + + + V F S Y TP P + CN+ +KF L+ + +L Sbjct: 72 VAQKIGIPLYRVEFIKEYWDNVFEYFLSEYQKNRTPNPDILCNQFIKFDSFLNYAKNELQ 131 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +A GHY R + + + + +D +DQ+YFL Q QL ++ FP+G + K Sbjct: 132 ADYIAMGHYARVKHD-----RNSSFLLKAIDTNKDQTYFLCNLNQNQLQNVLFPIGHLTK 186 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG-DIVHLNGQILGRH 256 VR +A++ GL A+K DS ICF+ + + ++ G I +N QI+G H Sbjct: 187 LQVRAIAKKHGLITANKKDSTGICFIGERNFKTFLQNYIPN--QPGQIINIVNNQIIGHH 244 Query: 257 NGIINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVGP----RESLEVHRIYLREINWL 311 G + YTIGQR+GL M E +FV D + + V P ++ L + + IN++ Sbjct: 245 IGTMYYTIGQRKGLNLGGMNERMFVCDKDIDKKIIYVAPSSFEKQYLISTQALIENINFI 304 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPV--FVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 + + V+ R QD + V F+ + + +S + GQ VFY Sbjct: 305 EPYNPQIPI------MVRFRHRQDLIIVNDFLPIKNTKNVLINYESARAITPGQYAVFYQ 358 Query: 370 SDSNEARVLGGGIISGS 386 +D +GGGI+S + Sbjct: 359 ND----HCIGGGIVSKT 371 >gi|187735150|ref|YP_001877262.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Akkermansia muciniphila ATCC BAA-835] gi|205811102|sp|B2UPK4|MNMA_AKKM8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|187425202|gb|ACD04481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Akkermansia muciniphila ATCC BAA-835] Length = 357 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 119/352 (33%), Positives = 169/352 (48%), Gaps = 16/352 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R++V +SGGVDSSV AALL G+DV+G ++ + + + G C QD+ DA V Sbjct: 3 RILVGLSGGVDSSVAAALLVEQGHDVVGAYMKNWVNDEG--IPGECPWEQDIQDALAVAK 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 T + V D + +R ++ Y AG TP P V CNR +KF L + G D + Sbjct: 61 TTGIEFRVIDLVDEYRARIVNYLIEGYRAGYTPNPDVLCNREMKFGVFLDYALEQGFDYV 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R D + + R D +DQSYFL Q+ FPLGD+ K VR Sbjct: 121 ATGHYARRM-----DTPQGAFILRGRDPNKDQSYFLSLMRPDQIARAVFPLGDLLKPEVR 175 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 LA + GL A K DSQ ICF+ Q K D ++ G+IV G+ LG HNG+ Sbjct: 176 VLAEKYGLPTARKKDSQGICFIGQVKMSDFLRHYLPD--KPGNIVDTEGRTLGTHNGLHL 233 Query: 262 YTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 +T+GQR+G GVA G VV D +R+I+G ++ +Y + G+ Sbjct: 234 FTMGQRKGHGVASPREGVAYVVVGKDVRRNRLILGYEDA-STRGLYASRA--VVGGISNT 290 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + + R + ++G V + F+ +A GQ C FY Sbjct: 291 LAPLPARVMAQPRYRAKAEWASCEYLEEGKVRLGFDTPLRALAVGQVCAFYD 342 >gi|224536253|ref|ZP_03676792.1| hypothetical protein BACCELL_01120 [Bacteroides cellulosilyticus DSM 14838] gi|224522139|gb|EEF91244.1| hypothetical protein BACCELL_01120 [Bacteroides cellulosilyticus DSM 14838] Length = 359 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 121/376 (32%), Positives = 188/376 (50%), Gaps = 33/376 (8%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N D RV+V MSGG+DS+ +LK GY+++G+T+ ++ A Sbjct: 2 NSPDKRVLVGMSGGIDSTATCLMLKEQGYEIVGLTMWVWGDEPVE--------------A 47 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R++ ++ + H+V D E FR ++ F Y G TP PCV CN T KF L +L Sbjct: 48 RQLAGSMGIEHHVADEREAFRKVIVQNFIDEYCQGRTPNPCVMCNPTFKFRILTEWADKL 107 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 G ++TGHY R ++ + + D ++DQSYFL+ Q L FPLG Sbjct: 108 GCAFISTGHYSRL-----EEKNGKIYIVAGDDDKKDQSYFLWRLGQDVLRRCIFPLGTYT 162 Query: 197 KESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQI 252 K VR+ RE G + A++ +S ++CF+ +G Y D ++ + I G V G Sbjct: 163 KLQVREYLREKGYQLKAEEGESMEVCFI-KGDYRDFLREHSPEIDSAIGPGWFVSSEGVK 221 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 LG H G YTIGQR+GL +A+G+P +V+ ++ + V++G E L + + N + Sbjct: 222 LGEHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLRTEYMLTEQDNLID 281 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 + F A V+IR P+P V+R +DG ++V F +A GQ+ VFY Sbjct: 282 EQEFFSAS----DLTVRIRYRSKPIPCTVKRLEDGRLFVHFLSEASAIAPGQSAVFYIG- 336 Query: 372 SNEARVLGGGIISGSK 387 RV+GG I+ + Sbjct: 337 ---RRVVGGSFIASQR 349 >gi|224371642|ref|YP_002605806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfobacterium autotrophicum HRM2] gi|223694359|gb|ACN17642.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfobacterium autotrophicum HRM2] Length = 365 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 121/360 (33%), Positives = 185/360 (51%), Gaps = 26/360 (7%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83 +AMSGG+DS V A +LKR G+D++G+ + + D + D + Sbjct: 31 AIAMSGGIDSLVAAHVLKRQGHDLVGIHF-------------TTGFESEAVDLSSIEDQL 77 Query: 84 NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143 ++ + D F AV+ F +YA G+TP PCV CNRT+KF L + LGA+ +AT Sbjct: 78 DIKIHQMDLSAEFNRAVVDYFVKTYARGKTPNPCVVCNRTIKFGVLAQRAKTLGAEKIAT 137 Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 GHY +R + + +D +DQSYFL +Q+QL FPLG M KE VR++ Sbjct: 138 GHYAGTRTRS----NGGIALVKGVDGVKDQSYFLAMLSQEQLKQAVFPLGRMTKEQVRNI 193 Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263 AR+ L ++ +SQDICF++ + V + GDIV +G ++GRH G+ YT Sbjct: 194 ARDNRLMPVEEKESQDICFIKAPGFSGFVAARLSTPPSPGDIVLTDGTVVGRHRGLHRYT 253 Query: 264 IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDG 323 IGQRRGL EP +V +D ++ ++VG ++ L ++ + ++NW+ + Sbjct: 254 IGQRRGLNSPGPEPYYVKTIDMENNLLVVGGKKELYTIKVAVGDLNWIT-----PPLASS 308 Query: 324 FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 K KIR S + +D + F+ ++ V GQ VFY + VLG GII Sbjct: 309 LKVTTKIRYSHKGAASTLSIENDRTTLVFDAPQLAVTPGQVAVFYRDE----EVLGAGII 364 >gi|195652181|gb|ACG45558.1| tRNA methyltransferase [Zea mays] Length = 486 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 119/373 (31%), Positives = 177/373 (47%), Gaps = 20/373 (5%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +RV V +SGGVDSSV LL G+ L+++ C +D+ A+ V Sbjct: 74 PLRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIWFQEDFRNFWSECPWDEDLKYAQAV 133 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD I+V V + + N V+ + Y G TP P V CN +KF L LG D Sbjct: 134 CDKIDVPLEVVHLSDEYWNHVVSHMINEYRCGRTPNPDVLCNTRIKFGSFLEAIENLGFD 193 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +A+GHY ++ + ++ D +DQ+YFL +Q QL L FPLG + K+ Sbjct: 194 YIASGHYAHVVHPSAENTEAPSVLQLSKDKIKDQTYFLSHLSQSQLRRLLFPLGCITKDE 253 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258 VR LA +M L + DSQ ICF+ + K+ + V+R EG I+ +G LG H G Sbjct: 254 VRRLATQMALPNQGRKDSQGICFLGKVKFSEFVERHIGE--KEGIILEAESGDYLGIHRG 311 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHR--IYLREINWLGDGL 315 YTIGQR+GL + G P +VV D ++ V V SL+ R + +NW + Sbjct: 312 FWFYTIGQRQGLRLPGG-PWYVVEKDVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFDNF- 369 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFV-----QRNDDGVYVDFEKSEVGVASGQACVFYTS 370 + + K+R S + + + N D + V + + G+A+GQ FY+ Sbjct: 370 ---GPGNNEQLKCKVRHSPEFHDCTLVKERSEENGDALVVHLAEDDQGLAAGQFAAFYSE 426 Query: 371 DSNEARVLGGGII 383 + LG GII Sbjct: 427 NV----CLGSGII 435 >gi|150003570|ref|YP_001298314.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides vulgatus ATCC 8482] gi|205810521|sp|A6KZ28|MNMA2_BACV8 RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|149931994|gb|ABR38692.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides vulgatus ATCC 8482] Length = 351 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 120/372 (32%), Positives = 187/372 (50%), Gaps = 24/372 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + + + +V++ MSGG DSSV A LL+ GY+V G+T + Y ++ + Sbjct: 1 MRETESNNKVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFYEKENDTEY---------L 51 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DAR +C+ +N+ H +D + FR +I F + Y AG TP+PC CN +K+ L ++ Sbjct: 52 EDARALCERLNIPHLTYDVRDTFRKTIIDYFINEYMAGHTPVPCTLCNNYLKWPLLKKIS 111 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 ++G ATGHY+R R G + +D ++DQS+FL+ Q+ L + P+G Sbjct: 112 DEMGIYHFATGHYVRRRFING-----CYHITTGVDPDKDQSFFLWGLPQEILQRMLLPMG 166 Query: 194 DMKKESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 ++ K VR++A E G L A K DS +CF + K + G L G G Sbjct: 167 NLTKARVREIAAERGFLKAAHKRDSLGVCFCPMDYRTFLHKELPEGSILPGKFFDEMGNF 226 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 + RH G YTIGQRRGLG+ + +FV + ++VI+ ++LE + L+E + Sbjct: 227 IARHKGYPFYTIGQRRGLGIDLNRAVFVKEIIPAENKVILSDLKALEKTEMRLKEWHITN 286 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSD 371 L +++ VKIR + V D+ ++V + +A GQA FY D Sbjct: 287 PAL----LLNKDDIIVKIRYRKQANRCTVTLQPDNTLHVQLHEPLTAIAPGQAAAFYRDD 342 Query: 372 SNEARVLGGGII 383 VLGGGII Sbjct: 343 V----VLGGGII 350 >gi|60683221|ref|YP_213365.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis NCTC 9343] gi|81313727|sp|Q5L8X6|MNMA3_BACFN RecName: Full=tRNA-specific 2-thiouridylase mnmA 3 gi|60494655|emb|CAH09456.1| putative tRNA methyltransferase [Bacteroides fragilis NCTC 9343] gi|301164740|emb|CBW24299.1| putative tRNA methyltransferase [Bacteroides fragilis 638R] Length = 362 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 119/374 (31%), Positives = 185/374 (49%), Gaps = 33/374 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RV+V MSGG+DS+ +L+ GY+++GVT++++ DAR Sbjct: 4 SKKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + HYV D F++ ++ F Y G TP PCV CN KF L+ +LG Sbjct: 50 LAARMGIEHYVADERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGC 109 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R ++ + D ++DQSYFL+ Q L FPLG+ K+ Sbjct: 110 DWIATGHYSRL-----EERNGHIYIVAGDDDKKDQSYFLWRLGQDVLRRCIFPLGNYTKQ 164 Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQILG 254 +VRD RE G + + +S ++CF+ +G Y D ++ + G V G LG Sbjct: 165 TVRDYLREKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDAEVGPGWFVSSEGVKLG 223 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +H G YTIGQR+GL +A+G+P +V+ ++ + V++G L + + N + Sbjct: 224 QHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAGQLRAEYMVAEQDNIVD-- 281 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 ED + V+IR P+P V+R +DG + V F +A GQ+ VFY Sbjct: 282 --EDELFACPDLAVRIRYRSRPIPCRVKRLEDGRLLVRFLAEASAIAPGQSAVFYEG--- 336 Query: 374 EARVLGGGIISGSK 387 RVLGG I+ + Sbjct: 337 -RRVLGGAFIASQR 349 >gi|124026416|ref|YP_001015531.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus str. NATL1A] gi|205816901|sp|A2C457|MNMA_PROM1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|123961484|gb|ABM76267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus str. NATL1A] Length = 404 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 144/386 (37%), Positives = 207/386 (53%), Gaps = 35/386 (9%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 D VVV +SGGVDSS+ AALL + G+DV G+TL L K KGSCC+ + DA + Sbjct: 36 DQSVVVGLSGGVDSSLTAALLCKAGWDVEGLTLWLM------KGKGSCCS-DGLVDAAGI 88 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGA 138 CD + + H++ D +E F+ +I Y G TPLPC CN++VKFS++L ++ Sbjct: 89 CDQLGIKHHIVDSKEIFQKEIINNVLKGYEEGITPLPCSRCNKSVKFSEMLKWVKENKNI 148 Query: 139 DVLATGHYIRSRLYVGD--------DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 + +ATGHY R R +G +R + R DL +DQSYFL+ Q+ L F Sbjct: 149 EKIATGHYARIRYSNESFNENDLPSNGIKRHKLLRGKDLNKDQSYFLYDLPQEILGRTIF 208 Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLN 249 PLG++ KE R A + L A K +SQD+C + G + + +G++V + Sbjct: 209 PLGELTKEITRIEALKHSLKTAKKPESQDLCLAEHYGSMNAFIDKYLPQ--KKGEVVLKS 266 Query: 250 GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 GQI+G HNGI ++TIGQR+GLG+A PL VV +D + +RVIV PRE +++IN Sbjct: 267 GQIIGSHNGIQHFTIGQRKGLGIAWEVPLHVVEIDASLNRVIVAPREDSGKSECIVKDIN 326 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--------VYVDFEKSEVGVAS 361 W+ +A + K V+IR V + D ++ FE+ + + Sbjct: 327 WVSI----EAPQEPIKVEVQIRYRSKAVKAKLIPIFDSNKENYCYQCHIHFEEDQFSITP 382 Query: 362 GQACVFYTSDSNEARVLGGGIISGSK 387 GQA VFY D VLGGG+IS Sbjct: 383 GQAAVFYMGD----YVLGGGLISKEY 404 >gi|253567176|ref|ZP_04844626.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 3_2_5] gi|251944007|gb|EES84526.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. 3_2_5] Length = 362 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 120/374 (32%), Positives = 185/374 (49%), Gaps = 33/374 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RV+V MSGG+DS+ +L+ GY+++GVT++++ DAR Sbjct: 4 SKKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + HYV D F+N ++ F Y G TP PCV CN KF L+ +LG Sbjct: 50 LAARMGIEHYVADERVPFKNTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGC 109 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R ++ + D ++DQSYFL+ Q L FPLG+ K+ Sbjct: 110 DWIATGHYSRL-----EERNGHIYIVAGDDDKKDQSYFLWRLGQDVLRRCIFPLGNYTKQ 164 Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQILG 254 +VRD RE G + + +S ++CF+ +G Y D ++ + G V G LG Sbjct: 165 TVRDYLREKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDAEVGPGWFVSSEGVKLG 223 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +H G YTIGQR+GL +A+G+P +V+ ++ + V++G L + + N + Sbjct: 224 QHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAGQLRAEYMVAEQDNIVD-- 281 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 ED + V+IR P+P V+R +DG + V F +A GQ+ VFY Sbjct: 282 --EDELFACPDLAVRIRYRSRPIPCRVKRLEDGRLLVRFLAEASAIAPGQSAVFYEG--- 336 Query: 374 EARVLGGGIISGSK 387 RVLGG I+ + Sbjct: 337 -RRVLGGAFIASQR 349 >gi|153809107|ref|ZP_01961775.1| hypothetical protein BACCAC_03417 [Bacteroides caccae ATCC 43185] gi|149128440|gb|EDM19659.1| hypothetical protein BACCAC_03417 [Bacteroides caccae ATCC 43185] Length = 361 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 117/374 (31%), Positives = 182/374 (48%), Gaps = 33/374 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV+V MSGG+DS+ +L+ GY+++GVT++++ DAR Sbjct: 4 RNKRVLVGMSGGIDSTATCLMLQERGYEIVGVTMRVWGDEP--------------QDARE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + HYV D F+ ++ F Y G TP PCV CN KF L +LG Sbjct: 50 LAAQMGIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLGC 109 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY R GD + D ++DQSYFL+ Q L FPLGD K Sbjct: 110 AWVATGHYSRLEERNGD-----IYIVAGDDDKKDQSYFLWQLGQDVLRRCIFPLGDYTKV 164 Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILG 254 VR+ + G + + +S ++CF+ +G Y D ++ + G V+ G LG Sbjct: 165 KVREYLADKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDNEIGPGWFVNSEGVKLG 223 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +H G YTIGQR+GL +A+G+P +V+ ++ + V++G E L + + Sbjct: 224 QHKGAPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLRTDYMLTEQ----DKI 279 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + E + V+IR P+P V+R DG + V F ++ +A GQ+ VFY Sbjct: 280 VDERELFQCENLTVRIRYRSRPLPCRVKRLADGRLLVRFLETASAIAPGQSAVFYDG--- 336 Query: 374 EARVLGGGIISGSK 387 RVLGG I+ + Sbjct: 337 -RRVLGGAFIASQR 349 >gi|198467713|ref|XP_002134614.1| GA22395 [Drosophila pseudoobscura pseudoobscura] gi|198149375|gb|EDY73241.1| GA22395 [Drosophila pseudoobscura pseudoobscura] Length = 387 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 118/377 (31%), Positives = 179/377 (47%), Gaps = 25/377 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 +VV MSGGVDS+V A LL+ G+ V+GV ++ ++ G C QD+ DA C Sbjct: 5 IVVGMSGGVDSAVSAHLLRERGHRVMGVFMRNWDEHD---EAGRCSGEQDLKDAEWACQR 61 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVL 141 + + +Y + + AV F Y G TP P + CNR +KF +LG D + Sbjct: 62 LGIELRQVNYVKEYWTAVFSAFLDDYQQGLTPNPDILCNRHIKFDLFHRHALDKLGYDAV 121 Query: 142 ATGHYIRSRL-----YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 ATGHY R+ L + D G+ R + P D +DQ++FL +Q L FPLGD+ Sbjct: 122 ATGHYARNSLGNFLEHRADGGEAR--LLIPADTFKDQTFFLAGIPRQALQRTMFPLGDLA 179 Query: 197 KESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILG 254 K V+ LAR +GL +A K +S ICFV + + ++ A + G V ++ G I+G Sbjct: 180 KNEVKLLARRIGLQRLAHKRESTGICFVGKRDFKSFIREYIA--SKSGQFVDIDSGAIVG 237 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWL 311 H GI +T+GQR LG + +P FV + +S+ + V +L I++ NWL Sbjct: 238 SHEGIHQWTVGQRCRLGSFL-QPYFVARKEASSNTIYVAAGHEHPALLSTCIHIEAPNWL 296 Query: 312 G-DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYT 369 A +C + + ++ V ++ D G V + + GQ VFY Sbjct: 297 CVQSQQRLASAGSLRCRFRFQHTKPLVDCCLRSCPDGGFEVLLDIPLRAITPGQYAVFYD 356 Query: 370 SDSNEARVLGGGIISGS 386 LG G I + Sbjct: 357 D----VACLGAGRIMSA 369 >gi|307192441|gb|EFN75657.1| Mitochondrial tRNA-specific 2-thiouridylase 1 [Harpegnathos saltator] Length = 408 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 119/383 (31%), Positives = 185/383 (48%), Gaps = 30/383 (7%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 +VV MSGGVDS+V A LLK G++V GV ++ ++ R + G C D DAR CD Sbjct: 5 IVVGMSGGVDSAVTAFLLKYKGFNVTGVFMKNWDIRDET---GKCMIENDYEDARWTCDR 61 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADVL 141 + + D+ + + N V Y G TP P V CN+ +KF +L AD + Sbjct: 62 LRIPLVQVDFVKEYWNEVFSDLVEKYQTGYTPNPDVLCNKYIKFDKFFHFALNKLQADAI 121 Query: 142 ATGHYIRSRL------YVGDDGK-----RRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 ATGHY R+ Y D G RR + + D ++DQ++FL +QQ L F Sbjct: 122 ATGHYARTSFGSYLEDYKADVGTYHLILRRVRLLQAYDRDKDQTFFLSQVSQQTLRRCMF 181 Query: 191 PLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 PLG+ K V+ +A+E L IA K +S ICFV + ++ + GD ++L+ Sbjct: 182 PLGNYLKSHVKTIAKEASLYRIAQKKESMGICFVGKREFQHFISEYIDD--KPGDYINLD 239 Query: 250 -GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYL 305 G I+G+HNGI TIGQR +G + FV D+ +S V+V +L + + Sbjct: 240 SGLIVGKHNGIHKMTIGQRCRIG-GRHKACFVSGKDQETSAVLVVEGTNHPALYTNFLIT 298 Query: 306 REINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRN--DDGVYVDFEKSEVGVASG 362 ++I+W+ + E +G F C + + + + V + + +++ + G Sbjct: 299 QDIHWISEEPSELRQSNGVFHCKFRFQHRKPLISCCVYKTSGEHRLFIRLSIPLRAITKG 358 Query: 363 QACVFYTSDSNEARVLGGGIISG 385 Q V Y+ + LGG IIS Sbjct: 359 QYAVLYSGE----ECLGGSIISR 377 >gi|300087159|ref|YP_003757681.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299526892|gb|ADJ25360.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 359 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 131/373 (35%), Positives = 201/373 (53%), Gaps = 28/373 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG------SCCAGQDVYD 75 +++VA+SGGVDS+V AAL + GYDV G+ + +Y+ ++ K +DV D Sbjct: 4 KILVALSGGVDSAVAAALAQESGYDVTGIIMTIYDGPESPNEKSHKHGCYGPGEEEDVKD 63 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A V + + VFD + +R ++ F + Y AG TP PCV CN+ +K LL R+ Sbjct: 64 AEAVAQHLGIKLQVFDLKNEYRTNILESFKNEYRAGRTPNPCVYCNQQIKLGALLDKARE 123 Query: 136 LGAD--VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 G D + TGHY R+ + + R + R +DQSYFL +Q QL LRFPLG Sbjct: 124 SGLDFEFVFTGHYARTDFHHQSN---RYRLLRARYHNKDQSYFLSRLSQAQLRILRFPLG 180 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 D+ K+ VR LA + L ++ K +SQ+ F+ G +++ G I + +G I+ Sbjct: 181 DLSKDEVRKLAERINLPVSRKEESQN--FISGG-----YRQLVCSQDTSGPIKNKSGDII 233 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+H+GI ++TIGQR GLG++ EPL+VV +D + ++VG R +L I + ++NW+ Sbjct: 234 GQHSGISSFTIGQRHGLGLSSPEPLYVVQIDAPENTIVVGARSALYRDEIQVEKLNWISI 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND--DGVYVDFEKSEVGVASGQACVFYTSD 371 E+ V + ++RS+ P V N D V V FE ++ A GQ VFY D Sbjct: 294 SQLENPV----QLTARVRSAAVPAAAMVIPNHLTDSVTVRFEVPQMAPAPGQIAVFYEDD 349 Query: 372 SNEARVLGGGIIS 384 V+G G+I+ Sbjct: 350 I----VVGSGVIT 358 >gi|297157006|gb|ADI06718.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces bingchenggensis BCW-1] Length = 384 Score = 384 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 138/389 (35%), Positives = 197/389 (50%), Gaps = 24/389 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQD 72 ++ + +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G CC +D Sbjct: 11 PRDGRRLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIED 69 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DARR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 70 SRDARRAADVIGIPFYVWDLAERFREDVVDNFIAEYEAGRTPNPCLRCNEKIKFAALLDK 129 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 LG D + TGHY +DG R + R D+ +DQSY L ++QL FPL Sbjct: 130 ALALGFDAVCTGHYATVVHR--EDGT--RELHRASDMAKDQSYVLGVLDERQLAHAMFPL 185 Query: 193 GD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250 GD K+ +R A GL +A K DS DICF+ G + + EGDIV +G Sbjct: 186 GDTLTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLAKHLGTA--EGDIVDEDG 243 Query: 251 QILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 + LG H G +TIGQR+GL + G+P +V+ + ++ V VGP ++L++ + Sbjct: 244 RKLGTHEGAYGFTIGQRKGLRIGHPAPDGKPRYVLDISPVNNTVTVGPVDALDIASLTAI 303 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 W G ++R+ V + D + V F + GVA GQA V Sbjct: 304 TPRWCG-----TPPTGPATYTAQLRAHGSETEVTAEAVDGELRVTFAEPVRGVAPGQAIV 358 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAVEES 395 Y ARV+G I+ ++R++ + Sbjct: 359 LYDG----ARVVGSATIATTERAERAASA 383 >gi|254881202|ref|ZP_05253912.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 4_3_47FAA] gi|319640212|ref|ZP_07994938.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 3_1_40A] gi|254833995|gb|EET14304.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 4_3_47FAA] gi|317388199|gb|EFV69052.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. 3_1_40A] Length = 351 Score = 384 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 120/372 (32%), Positives = 186/372 (50%), Gaps = 24/372 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + + + +V++ MSGG DSSV A LL+ GY+V G+T + Y ++ + Sbjct: 1 MRETESNNKVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFYEKENDTEY---------L 51 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DAR +C+ +N+ H +D + FR +I F + Y AG TP+PC CN +K+ L ++ Sbjct: 52 EDARALCERLNIPHLTYDVRDTFRKTIIDYFINEYMAGHTPVPCTLCNNYLKWPLLKKIS 111 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 ++G ATGHY+R R G + D ++DQS+FL+ Q+ L + P+G Sbjct: 112 DEMGIYHFATGHYVRRRFING-----CYHITTGADSDKDQSFFLWGLPQEILQRMLLPMG 166 Query: 194 DMKKESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 ++ K VR++A E G L A K DS +CF + K + G L G G Sbjct: 167 NLTKARVREIAAERGFLKAAHKRDSLGVCFCPMDYRTFLHKELPEGSILPGKFFDEMGNF 226 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 + RH G YTIGQRRGLG+ + +FV + ++VI+ ++LE + L+E + Sbjct: 227 IARHKGYPFYTIGQRRGLGIDLNRAVFVKEIIPAENKVILSDLKALEKTEMRLKEWHITN 286 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSD 371 L +++ VKIR + V D+ ++V + +A GQA FY D Sbjct: 287 PAL----LLNKDDIIVKIRYRKQANRCTVTLQPDNTLHVQLHEPLTAIAPGQAAAFYRDD 342 Query: 372 SNEARVLGGGII 383 VLGGGII Sbjct: 343 V----VLGGGII 350 >gi|53715285|ref|YP_101277.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis YCH46] gi|81608253|sp|Q64P39|MNMA3_BACFR RecName: Full=tRNA-specific 2-thiouridylase mnmA 3 gi|52218150|dbj|BAD50743.1| putative tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Bacteroides fragilis YCH46] Length = 362 Score = 384 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 118/374 (31%), Positives = 185/374 (49%), Gaps = 33/374 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RV+V MSGG+DS+ +L+ GY+++GVT++++ DAR Sbjct: 4 SKKRVLVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + HYV D F++ ++ F Y G TP PCV CN KF L+ +LG Sbjct: 50 LAARMGIEHYVADERVPFKDTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGC 109 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R ++ + D ++DQSYFL+ Q L FPLG+ K+ Sbjct: 110 DWIATGHYSRL-----EERNGHIYIVAGDDDKKDQSYFLWRLGQDVLRRCIFPLGNYTKQ 164 Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQILG 254 +VRD E G + + +S ++CF+ +G Y D ++ + G V G LG Sbjct: 165 TVRDYLHEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDAEVGPGWFVSSEGVKLG 223 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +H G YTIGQR+GL +A+G+P +V+ ++ + V++G L+ + + N + Sbjct: 224 QHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAGQLKAEYMVAEQDNIVD-- 281 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 ED + V+IR P+P V+R +DG + V F +A GQ+ VFY Sbjct: 282 --EDELFACPDLAVRIRYRSRPIPCRVKRLEDGHLLVRFLAEASAIAPGQSAVFYEG--- 336 Query: 374 EARVLGGGIISGSK 387 RVLGG I+ + Sbjct: 337 -RRVLGGAFIASQR 349 >gi|265767771|ref|ZP_06095303.1| tRNA methyl transferase [Bacteroides sp. 2_1_16] gi|263252443|gb|EEZ23971.1| tRNA methyl transferase [Bacteroides sp. 2_1_16] Length = 362 Score = 384 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 120/374 (32%), Positives = 185/374 (49%), Gaps = 33/374 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RV+V MSGG+DS+ +L+ GY+++GVT++++ DAR Sbjct: 4 SKKRVLVGMSGGIDSTATCMMLQEQGYEIVGVTMRVWGDEP--------------QDARE 49 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + HYV D F+N ++ F Y G TP PCV CN KF L+ +LG Sbjct: 50 LAARMGIEHYVADERVPFKNTIVKNFIDEYRQGRTPNPCVMCNPLFKFRMLIEWADKLGC 109 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R ++ + D ++DQSYFL+ Q L FPLG+ K+ Sbjct: 110 DWIATGHYSRL-----EERNGHIYIVAGDDDKKDQSYFLWRLGQDVLRRCIFPLGNYTKQ 164 Query: 199 SVRDLAREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQILG 254 +VRD RE G + + +S ++CF+ +G Y D ++ + G V G LG Sbjct: 165 TVRDYLREKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDAEVGPGWFVSSEGVKLG 223 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +H G YTIGQR+GL +A+G+P +V+ ++ + V++G L + + N + Sbjct: 224 QHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAGQLRAEYMVAEQDNIVD-- 281 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 ED + V+IR P+P V+R +DG + V F +A GQ+ VFY Sbjct: 282 --EDELFACPDLAVRIRYRSRPIPCRVKRLEDGHLLVRFLAEASAIAPGQSAVFYEG--- 336 Query: 374 EARVLGGGIISGSK 387 RVLGG I+ + Sbjct: 337 -RRVLGGAFIASQR 349 >gi|302522058|ref|ZP_07274400.1| tRNA methyl transferase [Streptomyces sp. SPB78] gi|302430953|gb|EFL02769.1| tRNA methyl transferase [Streptomyces sp. SPB78] Length = 382 Score = 384 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 141/386 (36%), Positives = 194/386 (50%), Gaps = 24/386 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQD 72 + +P+ +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G CC +D Sbjct: 3 ETSPRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIED 61 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DARR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 62 SRDARRAADVIGIPFYVWDLAERFREDVVDDFVAEYEAGRTPNPCLRCNEKIKFAALLDK 121 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 LG D + TGHY R + R + R D+ +DQSY L +QL FPL Sbjct: 122 ALALGFDAVCTGHYARVLTHPD----GSRELHRASDMAKDQSYVLGVLDDRQLAHAMFPL 177 Query: 193 GD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250 GD K+ +R A GL +A K DS DICF+ G + EGDIV +G Sbjct: 178 GDTETTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGTA--EGDIVDESG 235 Query: 251 QILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 LG H G +TIGQR+GL + G+P +V+ + + V VGPRESL+V + Sbjct: 236 TRLGTHQGAYGFTIGQRKGLRIGHPAADGKPRYVLDISPVDNTVTVGPRESLDVASLTAV 295 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 W G A + + ++R+ V + D + V F+ GVA GQA V Sbjct: 296 RPRWCG-----TAPLTAGRYTAQLRAHGGECEVRAELAGDELRVAFDAPVRGVAPGQAVV 350 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAV 392 Y RV+G I+ +++ + Sbjct: 351 LYDG----TRVVGSATIATTRKPEPA 372 >gi|269794372|ref|YP_003313827.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sanguibacter keddieii DSM 10542] gi|269096557|gb|ACZ20993.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sanguibacter keddieii DSM 10542] Length = 407 Score = 384 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 142/401 (35%), Positives = 202/401 (50%), Gaps = 29/401 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRV 79 M+V+ AMSGGVDS+V AA + G++V+GV + L +R + CC+ +D DARR Sbjct: 1 MKVLAAMSGGVDSAVAAARIVDAGHEVVGVHMALSRNRNQFREGSRGCCSIEDAGDARRA 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + +YV+D E+F + V+ F S YAAG TP PCV CN +KF LL LG D Sbjct: 61 ADVLGIPYYVWDLSEKFEDTVVADFLSEYAAGRTPNPCVRCNEHIKFEALLDKATALGFD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KE 198 +ATGHY + DG R + R + +DQSY L ++L FPLG + K+ Sbjct: 121 AVATGHYAQVITSTRPDGSELRELHRSPNTAKDQSYVLAVMGPERLRRAMFPLGAFESKD 180 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +VR A GL ++ K DS DICFV G ++ GDIV ++G +LG H G Sbjct: 181 AVRAEAAARGLSVSAKPDSYDICFVADGDTKGFLQERLG--TKTGDIVDVDGTVLGEHEG 238 Query: 259 IINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 YT+GQR+GL + G+ +V+ + S+ V+VGP E L V RI + WL D Sbjct: 239 AYAYTVGQRKGLAIGRPAADGKARYVLDIQPVSNTVVVGPAEMLSVDRITGDQSVWLADD 298 Query: 315 LF----------EDAVVDGFKCFVKIRSSQDPVPVFVQRNDD------GVYVDFE-KSEV 357 + A V++R+ +PVP V+ D G+ V+ + Sbjct: 299 VLAAHGAETGSTAAAPSGWIDAEVQVRAHGEPVPARVRAVPDASGATGGMEVELVGATLR 358 Query: 358 GVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLS 398 GVA+GQ+ V Y RVLG + S R+ E Sbjct: 359 GVAAGQSLVAYLG----TRVLGQSTVVASTRAGRAETQPAQ 395 >gi|294631522|ref|ZP_06710082.1| tRNA methyl transferase [Streptomyces sp. e14] gi|292834855|gb|EFF93204.1| tRNA methyl transferase [Streptomyces sp. e14] Length = 376 Score = 384 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 143/390 (36%), Positives = 199/390 (51%), Gaps = 24/390 (6%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAG 70 + + P+ +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G CC Sbjct: 3 ETSQRPRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 61 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 +D DARR D I + YV+D +RFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 62 EDSRDARRAADVIGIPFYVWDLADRFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALL 121 Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 LG D + TGHY ++ VG+DG R + R D+ +DQSY L ++QL F Sbjct: 122 DKALALGFDAVCTGHYA--KVVVGEDG--VRELHRASDMAKDQSYVLGVLDEKQLAHALF 177 Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 PLGD KE +R A GL +A K DS DICF+ G + R EGDIV Sbjct: 178 PLGDTVTTKEEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLARRLGKA--EGDIVDE 235 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 G ++G H G +TIGQR+GL + G+P +V+ + ++ V VGP +L+V + Sbjct: 236 TGAVVGTHEGAYGFTIGQRKGLRIGTPAPDGKPRYVLDISPVTNTVTVGPAAALDVEALT 295 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 W G V ++R+ V + D + V F + GVA GQA Sbjct: 296 AIRPRWCGAAPTGPGV-----YTAQLRAHGGESEVTAELVDGELRVTFTEPVRGVAPGQA 350 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEE 394 V Y RV+G I+ ++R+ A Sbjct: 351 IVLYDG----TRVVGSATIASTRRATAGAA 376 >gi|189463744|ref|ZP_03012529.1| hypothetical protein BACINT_00077 [Bacteroides intestinalis DSM 17393] gi|189438694|gb|EDV07679.1| hypothetical protein BACINT_00077 [Bacteroides intestinalis DSM 17393] Length = 359 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 117/373 (31%), Positives = 186/373 (49%), Gaps = 33/373 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + RV+V MSGG+DS+ +LK GY+++G+T+ ++ AR++ Sbjct: 5 EKRVLVGMSGGIDSTATCLMLKEQGYEIVGLTMWVWGDEPVE--------------ARQL 50 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D++ + H+V D E FR ++ F Y G TP PCV CN T KF L +L Sbjct: 51 ADSMGIEHHVADEREAFRKVIVQNFIDEYCQGRTPNPCVMCNPTFKFRILTEWADKLDCA 110 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++TGHY ++ + D ++DQSYFL+ Q L FPLG K Sbjct: 111 FISTGHYSHL-----EEKNGNIYIVAGDDDKKDQSYFLWRLGQDVLKRCLFPLGTYTKLQ 165 Query: 200 VRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQILGR 255 VR RE G + A++ +S ++CF+ +G Y D ++ + I G V+ G LG Sbjct: 166 VRKYLREKGYQLKAEEGESMEVCFI-KGDYRDFLREHSPEIDREIGPGWFVNSEGVKLGE 224 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H G YTIGQR+GL +A+G+P +V+ ++ + V++G E L+ + + N + + Sbjct: 225 HKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLQTEYMLAEQDNIIDEQE 284 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374 F A V++R P+P V+R +DG ++V F +A GQ+ VFY Sbjct: 285 FFSA----LDLTVRVRYRSKPIPCTVKRLEDGRLFVHFLSEASAIAPGQSAVFYIG---- 336 Query: 375 ARVLGGGIISGSK 387 RV+GG I+ + Sbjct: 337 RRVVGGSFIASQR 349 >gi|257125311|ref|YP_003163425.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Leptotrichia buccalis C-1013-b] gi|257049250|gb|ACV38434.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Leptotrichia buccalis C-1013-b] Length = 364 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 124/377 (32%), Positives = 196/377 (51%), Gaps = 23/377 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 ++K D +VVV MSGG+DSSV A LLK+ GY+VIGVTL+ + +CC+ D+ Sbjct: 1 MNKKLDDKKVVVGMSGGIDSSVAALLLKQQGYEVIGVTLKHLPDELSENPGKTCCSLDDI 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DAR C + + HYV + E F+ V+ F Y AG+TP PCV C+ VK L+ Sbjct: 61 NDARYTCYNLGIPHYVLNVVEEFKKDVMEYFIKMYNAGKTPSPCVICDEKVKIKKLVEFA 120 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 ++G ++TGHY + ++ + +DQ+Y L+ + + FPL Sbjct: 121 DKMGIKYISTGHYSKVSENN--------MLLWDKNNRKDQTYMLYRLDKDIVERFLFPLA 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 + +K VR++AR+ G+ +K DSQ ICF G Y +K++ +G+ V NG+I+ Sbjct: 173 EYEKSEVREIARQNGIHTHNKPDSQGICFAPNG-YIPFLKKVLGNDVKKGNFVDKNGKII 231 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G H G YTIGQRRGLG+ +G+P FV+ L ++ V+VG E L + I + + Sbjct: 232 GEHIGYQFYTIGQRRGLGLNLGKPFFVLELRPETNEVVVGDFEELLIKEIEVINYKFH-- 289 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR------NDDGVYVDFEKSEVGVASGQACVF 367 + + G K + R S + ++ N++ + +F++ + GQ VF Sbjct: 290 --YSLENIIGKKLTARPRFSSKGLTGELKILKNEESNENRIIFEFDEKTHENSEGQHIVF 347 Query: 368 YTSDSNEARVLGGGIIS 384 Y +D ++GGG I Sbjct: 348 YLND----EIVGGGEIK 360 >gi|310778027|ref|YP_003966360.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ilyobacter polytropus DSM 2926] gi|309747350|gb|ADO82012.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ilyobacter polytropus DSM 2926] Length = 356 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 128/365 (35%), Positives = 197/365 (53%), Gaps = 13/365 (3%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ-LYNSRKASKRKGSCCAGQDVYDARR 78 +VVV MSGGVDSSV A LLK +GY+VIGVTL+ L + + +CC+ D+YDA+ Sbjct: 2 KKKVVVGMSGGVDSSVAAYLLKEEGYEVIGVTLKHLSDEDSENTNTKTCCSLDDIYDAKM 61 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C + + HYV D E F+ VI F Y+ G TP PCV C+ +K L +LGA Sbjct: 62 ACFKLGIPHYVVDAVEPFKKDVIDYFIGEYSKGITPSPCVVCDEKIKIKKLAETADKLGA 121 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D ++TGHY ++ + +DQ+Y L+ + L + FPL + +K+ Sbjct: 122 DYISTGHYCDVSYS---QELGSHLLKLSKNSAKDQTYMLYRIGENILKRMLFPLKNFEKK 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR +A+E G+ + DK DSQ ICF +G Y +++KRI G+ + +G ILG+H G Sbjct: 179 KVRGIAKEAGISVHDKKDSQGICFAPEG-YKELLKRILGEKIKPGNFITRDGHILGQHEG 237 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 YTIGQRRGLG+ + + F+ +D + + +I+G E L + L + +L D Sbjct: 238 YQLYTIGQRRGLGINLSKVYFITGIDSDKNEIILGDFEELMKKEVELTDTVFLADI---- 293 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 ++ K F + R S +P +++ D+ ++ +++ + GQ V Y D V+ Sbjct: 294 EKLEKIKLFGRPRFSSIGLPGRLKKIDNRIFFIYDEENAKNSPGQHMVIYYKD----LVV 349 Query: 379 GGGII 383 GGG I Sbjct: 350 GGGKI 354 >gi|114686941|ref|XP_515202.2| PREDICTED: tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase 1 isoform 2 [Pan troglodytes] Length = 435 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 117/426 (27%), Positives = 180/426 (42%), Gaps = 61/426 (14%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV A+SGGVDS+V A LL+R GY V GV ++ ++S G C A +D DA RVC Sbjct: 6 HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEH---GVCTADKDCEDAYRVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140 +++ + Y + + N V F + Y G TP P + CN+ +KFS LGAD Sbjct: 63 ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122 Query: 141 LATGHYIRSRLYVGDDGKRRR-----------------------IMCRPMDLERDQSYFL 177 +ATGHY R+ L + R + + D +DQ++FL Sbjct: 123 IATGHYARTSLEDHEVRTRLHLKKKSGLWKVLCFRGDWSAELAVKLLQAADSFKDQTFFL 182 Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRIN 236 +Q L FPLG + KE V+ +A E L + K +S +CF+ + + + + Sbjct: 183 SQVSQDALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYL 242 Query: 237 AGIALEGDIVHL-NGQILGRHNGIINY---------TIGQRRGLGVAMGEPLFVVYLDKN 286 G + + + ++LG H G + + RG + EP + D Sbjct: 243 Q--PRPGHFISIEDNKVLGTHKGWNVFLSPLGCLVPPLCFYRGTVGCLREPC-MCEKDSV 299 Query: 287 SSRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQ 342 V V P +L + ++W+ + V D +C + R VP + Sbjct: 300 KGNVFVAPRTDHPALYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVPCVLT 359 Query: 343 RNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII-----------SGSKRSD 390 N DG V+V ++ +A+GQ VFY D LG G I G +R+ Sbjct: 360 LNQDGTVWVTAVQAVRALATGQFAVFYKGD----ECLGSGKILRLGPSAYTLQKGQRRAG 415 Query: 391 AVEESL 396 ES Sbjct: 416 MATESP 421 >gi|206889455|ref|YP_002249424.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206889622|ref|YP_002249374.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741393|gb|ACI20450.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741560|gb|ACI20617.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 342 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 122/364 (33%), Positives = 192/364 (52%), Gaps = 31/364 (8%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++AMSGG+DSSV A LL+ G V GV L++ + A++ + Sbjct: 3 KVLLAMSGGIDSSVAAYLLREKGMAVEGVFFILFDEPAN------------IELAKQTAN 50 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +N+ ++ D E+F+ VI PF Y G TP PCV CN+ +KF L + ++ A+ + Sbjct: 51 FLNIKLHIEDLREKFKADVITPFFEGYKKGITPNPCVICNKKIKFPLLKFLAEKVKANYI 110 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R ++ + +D ++DQSYFL+ + L + FPLG+ K +R Sbjct: 111 ATGHYARIVRI-----NNIPLLMKGIDPKKDQSYFLYGIERTLLSHIIFPLGEYTKYKIR 165 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 ++A ++G+ +S ++CF++ +Y++ ++ G I G+I+G+H GI Sbjct: 166 EIAEKVGIPSKVAEESTEVCFLRDKRYYESIRPTKGGPI----IEMSTGKIIGQHRGIHL 221 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YTIGQR+ LG+A PL+VV ++ + + V V +E + + E+NWL D E+ Sbjct: 222 YTIGQRKRLGIASPHPLYVVKIEPSENAVYVDSKEKAFMREFVVNELNWLCDIEKEE--- 278 Query: 322 DGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 F C VKIR + +P V N D V FEK + GQ+ VFY D VLGG Sbjct: 279 --FSCQVKIRYAMNPEKATVTLINKDRANVVFEKPQFAPTPGQSAVFYNGDI----VLGG 332 Query: 381 GIIS 384 G+I Sbjct: 333 GVIK 336 >gi|329963139|ref|ZP_08300919.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides fluxus YIT 12057] gi|328529180|gb|EGF56110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides fluxus YIT 12057] Length = 359 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 119/376 (31%), Positives = 189/376 (50%), Gaps = 33/376 (8%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N + RV+V MSGG+DS+ +LK GY+++G+T+ ++ + DA Sbjct: 2 NKSEKRVLVGMSGGIDSTATCLMLKEQGYEIVGLTMWVWGDKP--------------VDA 47 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + +++ + HY+ D + FR ++ F Y G TP PCV CN KF L+ +L Sbjct: 48 CELAESMGIGHYIADERDAFRRIIVQDFIDEYRQGRTPNPCVMCNPMFKFRILMEWADKL 107 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 G +ATGHY R G + + D ++DQSYFL+ Q L FPLG Sbjct: 108 GCKYIATGHYTRLEEIDG-----KVYIIAGDDDKKDQSYFLWRLGQDVLKRCIFPLGTYT 162 Query: 197 KESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQI 252 K VR R+ G + A++ +S ++CF+ +G Y D +K + I G V+ G Sbjct: 163 KPQVRGYLRDKGYAVKAEEGESMEVCFI-KGDYRDFLKEHSPEIDREIGPGWFVNSEGVK 221 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 LG H G YTIGQR+GL +A+G+P +V+ ++ + V++G E L+ + + + Sbjct: 222 LGEHKGYPYYTIGQRKGLEIALGKPAYVLKINPLKNTVMLGDAEQLKTRHMLVEQ----E 277 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 E V + + V+IR P+P V+R +DG + V F+ +A GQ+ VFY Sbjct: 278 KLTDEREVFESKELTVRIRYRSKPIPCTVRRLEDGRLLVCFQVEASAIAPGQSAVFYIG- 336 Query: 372 SNEARVLGGGIISGSK 387 RV+GG I+ + Sbjct: 337 ---RRVVGGSFIASQR 349 >gi|302558240|ref|ZP_07310582.1| tRNA methyl transferase [Streptomyces griseoflavus Tu4000] gi|302475858|gb|EFL38951.1| tRNA methyl transferase [Streptomyces griseoflavus Tu4000] Length = 377 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 142/391 (36%), Positives = 196/391 (50%), Gaps = 24/391 (6%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAG 70 + + P+ +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G CC Sbjct: 3 ETSQRPRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 61 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 +D DARR D I + YV+D +RFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 62 EDSRDARRAADVIGIPFYVWDLADRFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALL 121 Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 LG D + TGHY + L +DG R + R D+ +DQSY L +QL F Sbjct: 122 DKALALGFDAVCTGHYAQVILR--EDGT--RELHRASDMAKDQSYVLGVLDDRQLAHAMF 177 Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 PLGD KE +R A GL +A K DS DICF+ G + EGDIV Sbjct: 178 PLGDTVTTKEEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLAGRLGRA--EGDIVDE 235 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 +G +G H G +TIGQR+GL + G+P +V+ + ++ V VGP +L+V + Sbjct: 236 SGSKVGTHEGAYGFTIGQRKGLRIGTPAPDGKPRYVLDISPVTNTVTVGPAAALDVTALS 295 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 + W G A ++R+ V + D + V F + GVA GQA Sbjct: 296 AIKPRWCG-----AAPSGPGTYTAQLRAHGGETEVTAELVDGTLEVSFTEPVRGVAPGQA 350 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEES 395 V Y RV+G I+ + R+ A S Sbjct: 351 IVLYDG----TRVVGSATIASTVRAAAATAS 377 >gi|72382697|ref|YP_292052.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str. NATL2A] gi|123620903|sp|Q46JH9|MNMA_PROMT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|72002547|gb|AAZ58349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus str. NATL2A] Length = 388 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 144/383 (37%), Positives = 205/383 (53%), Gaps = 35/383 (9%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV +SGGVDSS+ AALL + G+DV G+TL L K KGSCC+ + DA +CD Sbjct: 23 VVVGLSGGVDSSLTAALLCKAGWDVEGLTLWLM------KGKGSCCS-DGLVDAAGICDQ 75 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVL 141 + + H++ D +E F+ +I Y G TPLPC CN++VKFS++L ++ + + Sbjct: 76 LGIKHHIVDSKEIFQKEIINNVLKGYEEGITPLPCSRCNKSVKFSEMLKWVKENKNIEKI 135 Query: 142 ATGHYIRSRLYVGD--------DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 ATGHY R R DG +R + R DL +DQSYFL+ Q+ L FPLG Sbjct: 136 ATGHYARIRYSNESFNENDLPSDGIKRHKLLRGKDLNKDQSYFLYDLPQEILGKTIFPLG 195 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGDIVHLNGQI 252 ++ KE R A + L A K +SQD+C + G + + +G++V NGQI Sbjct: 196 ELTKEITRIEALKHSLKTAKKPESQDLCLAEHYGSMNAFIDKYLPQ--KKGEVVLKNGQI 253 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G HNGI ++TIGQR+GLG+A PL VV +D + +RVIV PRE +++INW+ Sbjct: 254 IGSHNGIQHFTIGQRKGLGIAWEVPLHVVEIDASLNRVIVAPREDSGKSECIVKDINWVS 313 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--------GVYVDFEKSEVGVASGQA 364 +A + + V+IR + + D + FEK + + GQA Sbjct: 314 I----EAPQEPIEVEVQIRYRSKAMKAKLIPIFDSNKENYCYKCNIHFEKDQFSITPGQA 369 Query: 365 CVFYTSDSNEARVLGGGIISGSK 387 VFY D VLGGG+IS Sbjct: 370 AVFYKGD----YVLGGGLISKEY 388 >gi|115451057|ref|NP_001049129.1| Os03g0174600 [Oryza sativa Japonica Group] gi|108706458|gb|ABF94253.1| tRNA methyl transferase family protein, expressed [Oryza sativa Japonica Group] gi|113547600|dbj|BAF11043.1| Os03g0174600 [Oryza sativa Japonica Group] gi|215737060|dbj|BAG95989.1| unnamed protein product [Oryza sativa Japonica Group] Length = 488 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 119/373 (31%), Positives = 174/373 (46%), Gaps = 20/373 (5%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +RV V +SGGVDSSV LL G+ L+++ C D+ A+ V Sbjct: 77 PLRVAVLVSGGVDSSVALRLLHAAGHRCTAFYLKIWFQEDFRNFWSECPWDDDLKYAQAV 136 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD I+V V + + N V+ + Y +G TP P V CN +KF L LG D Sbjct: 137 CDKIDVPLEVVHLSDEYWNHVVSHIINEYRSGRTPNPDVLCNTRIKFGAFLEAIENLGFD 196 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +A+GHY DD + ++ D +DQ+YFL +Q QL L FPLG + K+ Sbjct: 197 YIASGHYAHVVHPSPDDVEGPSVLQLSKDKVKDQTYFLSHLSQTQLRRLLFPLGCITKDE 256 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258 VR LA +M L D+ DSQ ICF+ + K+ + V+R +EG ++ G LG H G Sbjct: 257 VRRLAAQMDLPNQDRKDSQGICFLGKVKFSEFVERQIGE--MEGVLLEAETGDYLGTHRG 314 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHR--IYLREINWLGDGL 315 YTIGQR+GL + G P +VV ++ V V SL+ R + +NW + Sbjct: 315 FWFYTIGQRQGLRLPGG-PWYVVEKGVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFSNS- 372 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-----VYVDFEKSEVGVASGQACVFYTS 370 + + K+R S + V + + V + + G+A+GQ FY Sbjct: 373 ---GPTNNEQLKCKVRHSPEFHDCTVTQEQTSEHGVILVVRLSEDDQGLAAGQFAAFYRD 429 Query: 371 DSNEARVLGGGII 383 + LG GII Sbjct: 430 N----LCLGSGII 438 >gi|195043220|ref|XP_001991577.1| GH11989 [Drosophila grimshawi] gi|193901335|gb|EDW00202.1| GH11989 [Drosophila grimshawi] Length = 381 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 113/388 (29%), Positives = 175/388 (45%), Gaps = 27/388 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVVV MSGGVDS+V A LLK G +V+GV ++ ++ G C QD+ DA C Sbjct: 4 RVVVGMSGGVDSAVSAHLLKERGLNVLGVFMRNWDEHD---EIGRCTGEQDLKDAEWACR 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 + + +Y +++ AV F Y G TP P + CN+ +KF L D Sbjct: 61 QLQIELRQVNYVKQYWTAVFSQFLDDYQQGLTPNPDILCNKHIKFDLFHRHALDTLQYDA 120 Query: 141 LATGHYIRS------RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 +ATGHY R+ D K + P D +DQ++FL Q L FPLG Sbjct: 121 VATGHYARNSLGDYLEHRSTDQQKADVRLLIPADTFKDQTFFLAGIPQTALQFTMFPLGG 180 Query: 195 MKKESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQI 252 + K V+ LAR +GL +A K +S ICFV + + ++ G V ++ G++ Sbjct: 181 LLKTEVKQLARRIGLQRLAVKRESTGICFVGKRDFKAFIREYI--SCKPGHFVDVDSGEV 238 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 +G H GI +T+GQR L + +P FV D S+ + V +L RI + + N Sbjct: 239 VGNHEGIHQWTVGQRCRLSSYL-QPYFVARKDAASNTIFVAAGHDHPALHSIRIRIGDFN 297 Query: 310 WLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 WL + + G +C + + ++ V +++ V + + GQ VFY Sbjct: 298 WLCNRARQQLATSGSLRCRFRFQHTKPVVECWLRP----FEVLLDAPLRAITPGQYAVFY 353 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 LG I ++ +E+ Sbjct: 354 DD----VACLGSARILCAEPLQQMEQQA 377 >gi|301065024|ref|ZP_07205369.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [delta proteobacterium NaphS2] gi|300440873|gb|EFK05293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [delta proteobacterium NaphS2] Length = 363 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 122/378 (32%), Positives = 188/378 (49%), Gaps = 21/378 (5%) Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCA 69 + K+ ++++VA+SGGVDSS+ AA LK G+ V G+ L + S+++ Sbjct: 3 HPSGPAKSSNALKILVALSGGVDSSMAAAFLKGAGHRVHGLHFVLPSPADISQKR----- 57 Query: 70 GQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 + A+ + + + + FD F +I PF +Y G TP PCV CN +KF + Sbjct: 58 ---ISKAKEISEHLQIPLTTFDLRPIFETELIAPFVDAYLKGLTPNPCVRCNPLIKFEQM 114 Query: 130 LSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLR 189 + D +ATGHY+R R + R D +DQSYFL Q+QL Sbjct: 115 YRHLKTFQFDFMATGHYVRIRRKGK---NSPVTLWRGKDRLKDQSYFLHRLGQRQLAKTI 171 Query: 190 FPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA-LEGDIVHL 248 FPLG M K +R AR+MG+ ++ +SQ+ICF+ Y + ++ + +G I++L Sbjct: 172 FPLGHMTKTEIRFQARKMGIPSSEDPESQEICFIPNMDYRNFIESRKKNASFQKGPIINL 231 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 G+ +G H+GI YT+GQR GLG+A P +V L + VIVG RE L + + Sbjct: 232 KGETVGEHSGIHRYTVGQRHGLGIASSRPYYVKTLKPEDNCVIVGRREDLFSKGVAATDF 291 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVF 367 +W+ FE +D ++R P ++ + V F + ++ + GQA V Sbjct: 292 HWIT--PFEPGSLDSL--SGQVRYRHKPAGGRLEIDASRRVRFIFHRPQMAITPGQALVC 347 Query: 368 YTSDSNEARVLGGGIISG 385 Y D RVLGGG I G Sbjct: 348 YQGD----RVLGGGWIVG 361 >gi|226365929|ref|YP_002783712.1| tRNA-specific 2-thiouridylase MnmA [Rhodococcus opacus B4] gi|254811458|sp|C1B1S2|MNMA_RHOOB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|226244419|dbj|BAH54767.1| putative tRNA uridine-sulfurtransferase [Rhodococcus opacus B4] Length = 364 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 143/373 (38%), Positives = 199/373 (53%), Gaps = 23/373 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV+GV L L ++ + R GS CC+ +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVAAGHDVVGVHLAL-SAEPGTLRTGSRGCCSKEDAGDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ +RF+ VI F +SYAAGETP PC+ CN +KF+ L LG Sbjct: 60 AADVLGIPFYVWDFADRFKEDVIDDFVASYAAGETPNPCLRCNEKIKFAALADRAIALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + V + R +D ++DQSY L T +QL FP+GD K+ Sbjct: 120 DAVATGHYAQLENGV---------LRRAVDADKDQSYVLGVLTAEQLSRAMFPVGDTPKD 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHN 257 +R+ A E GL +A+K DS DICF+ G + G +V + G++L H Sbjct: 171 RIREEAAERGLAVANKPDSHDICFIPSGDTRAFLGAHIG--VRPGSVVDADSGEVLAEHE 228 Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+ +TIGQR+GLGV A G+P +V ++ + V VG LEVH I W Sbjct: 229 GVHGFTIGQRKGLGVQGPAADGQPRYVTSIEPETGTVRVGSARDLEVHAITADRAVWTSG 288 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 A +C V++R+ + D G+ + + GVA GQA V Y +D Sbjct: 289 R----APSGPVECTVQVRAHGGLAEAVAEAVDGGIRISLREPLTGVAKGQAAVLYRTDPA 344 Query: 374 EARVLGGGIISGS 386 VLG G ISG+ Sbjct: 345 GDIVLGSGTISGT 357 >gi|15610161|ref|NP_217540.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis H37Rv] gi|15842587|ref|NP_337624.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis CDC1551] gi|31794202|ref|NP_856695.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium bovis AF2122/97] gi|121638907|ref|YP_979131.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662876|ref|YP_001284399.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis H37Ra] gi|148824215|ref|YP_001288969.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium tuberculosis F11] gi|215405014|ref|ZP_03417195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium tuberculosis 02_1987] gi|215428470|ref|ZP_03426389.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium tuberculosis T92] gi|215447296|ref|ZP_03434048.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium tuberculosis T85] gi|224991399|ref|YP_002646088.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|253797879|ref|YP_003030880.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis KZN 1435] gi|254233657|ref|ZP_04926982.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis C] gi|254365655|ref|ZP_04981700.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis str. Haarlem] gi|254552097|ref|ZP_05142544.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188054|ref|ZP_05765528.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis CPHL_A] gi|260202161|ref|ZP_05769652.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis T46] gi|289444586|ref|ZP_06434330.1| tRNA methyl transferase [Mycobacterium tuberculosis T46] gi|289448700|ref|ZP_06438444.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis CPHL_A] gi|289553185|ref|ZP_06442395.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis KZN 605] gi|289746832|ref|ZP_06506210.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase trmU [Mycobacterium tuberculosis 02_1987] gi|289751695|ref|ZP_06511073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis T92] gi|289759148|ref|ZP_06518526.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU [Mycobacterium tuberculosis T85] gi|294993474|ref|ZP_06799165.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis 210] gi|297635653|ref|ZP_06953433.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis KZN 4207] gi|297732651|ref|ZP_06961769.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis KZN R506] gi|306777328|ref|ZP_07415665.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu001] gi|306781232|ref|ZP_07419569.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu002] gi|306785873|ref|ZP_07424195.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu003] gi|306790227|ref|ZP_07428549.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu004] gi|306794722|ref|ZP_07433024.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu005] gi|306798964|ref|ZP_07437266.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu006] gi|306969100|ref|ZP_07481761.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu009] gi|306973444|ref|ZP_07486105.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu010] gi|307081154|ref|ZP_07490324.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu011] gi|307085756|ref|ZP_07494869.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu012] gi|313659983|ref|ZP_07816863.1| tRNA-specific 2-thiouridylase MnmA [Mycobacterium tuberculosis KZN V2475] gi|54039755|sp|P66977|MNMA_MYCBO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|54042259|sp|P66976|MNMA_MYCTU RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|166234858|sp|A1KN20|MNMA_MYCBP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|166235068|sp|A5U737|MNMA_MYCTA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|254811454|sp|C1AGE1|MNMA_MYCBT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|2791622|emb|CAA16109.1| PROBABLE tRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE TRMU [Mycobacterium tuberculosis H37Rv] gi|13882900|gb|AAK47438.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium tuberculosis CDC1551] gi|31619797|emb|CAD96737.1| PROBABLE tRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE TRMU [Mycobacterium bovis AF2122/97] gi|121494555|emb|CAL73036.1| Probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124599186|gb|EAY58290.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis C] gi|134151168|gb|EBA43213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis str. Haarlem] gi|148507028|gb|ABQ74837.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU [Mycobacterium tuberculosis H37Ra] gi|148722742|gb|ABR07367.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase trmU [Mycobacterium tuberculosis F11] gi|224774514|dbj|BAH27320.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium bovis BCG str. Tokyo 172] gi|253319382|gb|ACT23985.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis KZN 1435] gi|289417505|gb|EFD14745.1| tRNA methyl transferase [Mycobacterium tuberculosis T46] gi|289421658|gb|EFD18859.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis CPHL_A] gi|289437817|gb|EFD20310.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis KZN 605] gi|289687360|gb|EFD54848.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase trmU [Mycobacterium tuberculosis 02_1987] gi|289692282|gb|EFD59711.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis T92] gi|289714712|gb|EFD78724.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU [Mycobacterium tuberculosis T85] gi|308214222|gb|EFO73621.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu001] gi|308325877|gb|EFP14728.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu002] gi|308329399|gb|EFP18250.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu003] gi|308333244|gb|EFP22095.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu004] gi|308336898|gb|EFP25749.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu005] gi|308340714|gb|EFP29565.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu006] gi|308353256|gb|EFP42107.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu009] gi|308357089|gb|EFP45940.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu010] gi|308361042|gb|EFP49893.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu011] gi|308364679|gb|EFP53530.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu012] gi|323718255|gb|EGB27433.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis CDC1551A] gi|326902753|gb|EGE49686.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis W-148] gi|328457656|gb|AEB03079.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis KZN 4207] Length = 367 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 139/372 (37%), Positives = 196/372 (52%), Gaps = 22/372 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+V+ AMSGGVDSSV AA + G++V+GV + L ++ + R GS CC+ +D DARR Sbjct: 1 MKVLAAMSGGVDSSVAAARMVDAGHEVVGVHMAL-STAPGTLRTGSRGCCSKEDAADARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ E+F+ VI F SSYA GETP PCV CN+ +KF+ L + LG Sbjct: 60 VADVLGIPFYVWDFAEKFKEDVINDFVSSYARGETPNPCVRCNQQIKFAALSARAVALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R + R +D ++DQSY L T QQL FP+GD K Sbjct: 120 DTVATGHYARLS---------GGRLRRAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKR 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R A GL +A+K DS DICF+ G + G +V +G +L H+G Sbjct: 171 QIRAEAARRGLAVANKPDSHDICFIPSGNTKAFLGERIG--VRRGVVVDADGVVLASHDG 228 Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 + +TIGQRRGLG+A G P +V +D +++ V VG L+V + R + Sbjct: 229 VHGFTIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTAGA 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 A C V++R+ + V + D ++V GVA GQ V Y D Sbjct: 289 ----APSGPVDCVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQTLVLYRPDPAG 344 Query: 375 ARVLGGGIISGS 386 VLG I+G+ Sbjct: 345 DEVLGSATIAGA 356 >gi|294777621|ref|ZP_06743072.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides vulgatus PC510] gi|294448689|gb|EFG17238.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides vulgatus PC510] Length = 351 Score = 382 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 120/372 (32%), Positives = 185/372 (49%), Gaps = 24/372 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + + + +V++ MSGG DSSV A LL+ GY+V G+T + Y ++ + Sbjct: 1 MRETESNNKVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFYEKENDTEY---------L 51 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DAR +C+ +N+ H +D + FR +I F + Y AG TP+PC CN +K+ L ++ Sbjct: 52 EDARALCERLNIPHLTYDVRDTFRKTIIDYFINEYMAGHTPVPCTLCNNYLKWPLLKKIS 111 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 ++G ATGHY+R R G + D ++DQS+FL+ Q+ L + P+G Sbjct: 112 DEMGIYHFATGHYVRRRFING-----CYHITTGADPDKDQSFFLWGLPQEILQRMLLPMG 166 Query: 194 DMKKESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 ++ K VR++A E G L A K DS +CF + K + G L G G Sbjct: 167 NLTKARVREIAAERGFLKAAHKRDSLGVCFCPMDYRTFLHKELPEGSILPGKFFDEMGNF 226 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 + RH G YTIGQRRGLG+ + +FV + ++VI+ ++LE + L+E Sbjct: 227 IARHKGYPFYTIGQRRGLGIDLNRAVFVKEIIPAENKVILSDLKALEKTEMRLKEWRITN 286 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSD 371 L +++ VKIR + V D+ ++V + +A GQA FY D Sbjct: 287 PAL----LLNKDDIIVKIRYRKQANRCTVTLQPDNTLHVQLHEPLTAIAPGQAAAFYRDD 342 Query: 372 SNEARVLGGGII 383 VLGGGII Sbjct: 343 V----VLGGGII 350 >gi|320008432|gb|ADW03282.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces flavogriseus ATCC 33331] Length = 377 Score = 382 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 143/385 (37%), Positives = 196/385 (50%), Gaps = 23/385 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDA 76 + +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G CC +D DA Sbjct: 7 RPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDA 65 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL L Sbjct: 66 RRAADVIGIPFYVWDLAERFREDVVDDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALAL 125 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194 G D + TGHY L DDG R M R D+ +DQSY L ++QL FPLGD Sbjct: 126 GFDAVCTGHYATVVL--KDDGT--REMHRASDMAKDQSYVLGVLDEKQLAHAMFPLGDTL 181 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 K+ +R A GL +A K DS DICF+ G + G A EGDI+ +G +G Sbjct: 182 TTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLAGRLGGPA-EGDILDESGAKVG 240 Query: 255 RHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 H G +TIGQR+GL + G+P +V+ + ++ V VGP E+L+V + + W Sbjct: 241 THEGAFGFTIGQRKGLRIGHPAPDGKPRYVLDISPVNNTVTVGPVEALDVTALTAIKPRW 300 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 G A ++R+ V + D ++V F + GVA GQA V Y Sbjct: 301 CG-----TAPSGPGTYTAQLRAHGGETEVTAELTDGTLHVTFTEPVRGVAPGQAVVLYDG 355 Query: 371 DSNEARVLGGGIISGSKRSDAVEES 395 RV+G I+ + R + + Sbjct: 356 ----TRVVGSATIATTVRRETAAAA 376 >gi|254525416|ref|ZP_05137468.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus str. MIT 9202] gi|221536840|gb|EEE39293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus str. MIT 9202] Length = 385 Score = 382 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 134/376 (35%), Positives = 204/376 (54%), Gaps = 32/376 (8%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++V +SGGVDSS+ AALL G++V G+TL L K +GSCC+ + + DA +C+ Sbjct: 26 IIVGLSGGVDSSLSAALLVEKGWNVEGLTLWLM------KGQGSCCS-EGLVDAAGLCED 78 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVL 141 + ++H + D E F VI SY G TPLPC CN+ VKF ++L+ + + Sbjct: 79 LGINHKIIDSREIFEREVIKKTTDSYEKGLTPLPCSMCNKNVKFEEMLNYAINKKDFTHI 138 Query: 142 ATGHYIRSRLYVGDDG-------KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 ATGHY R + + + ++ R D +DQSYFL++ +Q+ L L FPLG+ Sbjct: 139 ATGHYARIKKSSYVEKLNCKSFVFKEFLLLRGADENKDQSYFLYSLSQEVLSRLEFPLGE 198 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQIL 253 MKKE R A +GL A K +SQD+C V+ Y + + I+ I EG+I+H+NG++L Sbjct: 199 MKKEETRKEALRLGLRTAQKPESQDLCLVEH--YGSMQRFIDKHIEPKEGEIMHVNGKVL 256 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G H GI ++T+GQR+GLG+A EPL+V LD+ + V V + L + ++NW+ Sbjct: 257 GTHKGIQHFTVGQRKGLGIAWPEPLYVKSLDRGKNIVYVSDKSDLFNKEAIISKVNWVSI 316 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD------GVYVDFEKSEVGVASGQACVF 367 D + +IR PV + + + FE+++ + GQA VF Sbjct: 317 ----DEPKQEIEVEAQIRYRSHPVKGTLIPLKNLDNPTKKFKLIFEENQSSITPGQAAVF 372 Query: 368 YTSDSNEARVLGGGII 383 Y D +LGGG+I Sbjct: 373 YKGDI----LLGGGLI 384 >gi|254459256|ref|ZP_05072678.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacterales bacterium GD 1] gi|207084149|gb|EDZ61439.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacterales bacterium GD 1] Length = 344 Score = 382 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 121/372 (32%), Positives = 197/372 (52%), Gaps = 32/372 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + +V+V MSGG+DSSV A LL+++GY+VIGV ++L++ + ++ ++V Sbjct: 2 NKKVIVGMSGGIDSSVTAYLLQQEGYEVIGVYMKLHDLIENF-------HEDNIASGKKV 54 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 ++ + +++ D +F+ V F Y G TP PCV CNRT+KF L ++ GAD Sbjct: 55 ARSLGIEYHILDLSSKFKEEVYDYFVGEYLNGNTPNPCVKCNRTIKFGALFDFAKEQGAD 114 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 LATGHY ++ DG+ + + D +DQSYFL Q L L FP+ +K Sbjct: 115 FLATGHYAKT------DGE---FIYKAEDDTKDQSYFLAQIKQDVLKHLIFPMNKYRKTE 165 Query: 200 VRDLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + L + + +IA + +SQ+ICFV+ Y D++K+ I L G + +G +G H Sbjct: 166 IVKLGSTLPVIKEIAKRKESQEICFVENV-YTDIIKKHT-DIDLPGLALDTDGNEVGHHK 223 Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G ++YTIG+RRG V EP +V +D N++ ++V ++ L V ++ + +N D Sbjct: 224 GYMHYTIGKRRGFTVHGAHEPHYVKEIDPNANTIVVCKKDDLGVSKVLIDTLNLFIDK-- 281 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 F+C VK+R + V D + +K+ GVA+GQ VFY + + Sbjct: 282 -----KEFECTVKLRYRTHKIACKVIIEDSEAMIYLDKNVDGVATGQVAVFYDGN----K 332 Query: 377 VLGGGIISGSKR 388 VLG G I + + Sbjct: 333 VLGSGFIKKTFQ 344 >gi|119962187|ref|YP_948425.1| tRNA-specific 2-thiouridylase MnmA [Arthrobacter aurescens TC1] gi|119949046|gb|ABM07957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arthrobacter aurescens TC1] Length = 436 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 144/383 (37%), Positives = 195/383 (50%), Gaps = 27/383 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV+GV L L + + R GS CC +D DA R Sbjct: 58 MRVLAAMSGGVDSAVAAARAVEAGHDVVGVHLAL-SRMPGTLRTGSRGCCTIEDSRDAWR 116 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 CD + + +YV+D+ ERF+ V+ F YAAG TP PC+ CN +KF+ LL LG Sbjct: 117 ACDVLGIPYYVWDFSERFKEDVVQDFIDEYAAGRTPNPCMRCNERIKFAALLEKAIALGF 176 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197 D + TGHY + V +D R + R D +DQSY L T +QL FPL D K Sbjct: 177 DAVCTGHYAK----VIEDADGNRELHRAADWAKDQSYVLGVLTHEQLKHSMFPLADTPSK 232 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR A GL +A+K DS DICF+ G + GDIV G +G H Sbjct: 233 AEVRAEAERRGLSVANKPDSHDICFISDGDTRGWLAEKIDMTT--GDIVDETGAKVGEHP 290 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G +T+GQRRGL + G+P FV+ + ++V+VGP L + I +++W G Sbjct: 291 GANAFTVGQRRGLKLGTPAADGKPRFVLEIRPKENKVVVGPEALLAIDEIRGIKVSWAGL 350 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR----NDDGVY-----VDFEKSEVGVASGQA 364 + E A F C ++R+ DPVP + ++ GV V GVA GQ Sbjct: 351 PISEVATGAEFDCHAQVRAHGDPVPAIARVEAVTDESGVERAQLVVTLTDPLRGVAPGQT 410 Query: 365 CVFYTSDSNEARVLGGGIISGSK 387 V Y +RVLG I ++ Sbjct: 411 VVLYQG----SRVLGQATIDAAR 429 >gi|126696814|ref|YP_001091700.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str. MIT 9301] gi|205816922|sp|A3PEC4|MNMA_PROM0 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|126543857|gb|ABO18099.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus str. MIT 9301] Length = 385 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 137/377 (36%), Positives = 206/377 (54%), Gaps = 32/377 (8%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++V +SGGVDSS+ AALL G++V G+TL L K +GSCC+ + + DA +C+ Sbjct: 26 IIVGLSGGVDSSLSAALLVERGWNVEGLTLWLI------KGQGSCCS-EGLVDAAGLCED 78 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVL 141 + ++H + D E F VI SY G TPLPC CN+ VKF ++L+ + + Sbjct: 79 LGINHKIIDSREIFEREVIKKTTESYEKGFTPLPCSMCNKNVKFEEMLNYAVNKKDFTHI 138 Query: 142 ATGHYIRSRLYVGDDG-------KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 ATGHY R + + + ++ R D +DQSYFL++ +Q+ L L FPLG+ Sbjct: 139 ATGHYARIKKSSYAETLDCKSFKFKDFLLLRGADENKDQSYFLYSLSQEVLSRLEFPLGE 198 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQIL 253 MKKE R A +GL A K +SQD+C V+ Y + + I+ I EG+IVH+NG++L Sbjct: 199 MKKEETRKEALRLGLRTAQKPESQDLCLVEH--YGSMQRFIDKHIEPKEGEIVHVNGKVL 256 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G HNGI ++TIGQR+GLG+A +PL+V LD+ + V V + L + ++NW+ Sbjct: 257 GTHNGIQHFTIGQRKGLGIAWPDPLYVKSLDRVKNIVYVADKSDLFNREAIITKVNWVSI 316 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD------GVYVDFEKSEVGVASGQACVF 367 + + +IR PV + + + FE+S+ V GQA VF Sbjct: 317 ----EEPKQEIEVEAQIRYRSHPVKGTLIPLKNFDNPTTTFKLIFEESQSSVTPGQAAVF 372 Query: 368 YTSDSNEARVLGGGIIS 384 Y + +LGGG+IS Sbjct: 373 YKGEI----LLGGGLIS 385 >gi|294815245|ref|ZP_06773888.1| tRNA-specific 2-thiouridylase mnmA [Streptomyces clavuligerus ATCC 27064] gi|294327844|gb|EFG09487.1| tRNA-specific 2-thiouridylase mnmA [Streptomyces clavuligerus ATCC 27064] Length = 381 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 142/382 (37%), Positives = 191/382 (50%), Gaps = 24/382 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQD 72 P+ +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G CC +D Sbjct: 3 QTPPRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIED 61 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DARR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 62 SRDARRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDK 121 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 LG D + TGHY R + R D+ +DQSY L ++QL FPL Sbjct: 122 ALALGFDAVCTGHYATVVTLPD----GGRELHRASDMAKDQSYVLGVLDERQLAHAMFPL 177 Query: 193 GD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250 GD K+ +R A GL +A K DS DICF+ G + EGDIV +G Sbjct: 178 GDTLTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGRA--EGDIVDESG 235 Query: 251 QILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 LG H G +TIGQR+GL + G+P +V+ + +RV VGP E+L+V + Sbjct: 236 TRLGTHEGAYGFTIGQRKGLRIGHPAADGKPRYVLDISPVDNRVTVGPAEALDVVGLTAI 295 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 W G A ++R+ PV + DG+ V+F + GVA GQA V Sbjct: 296 RPRWCG-----TAPAGAGAYTAQLRAHGGETPVTAEPVGDGLRVEFAEPVRGVAPGQAIV 350 Query: 367 FYTSDSNEARVLGGGIISGSKR 388 Y RV+G I+ ++R Sbjct: 351 LYDG----TRVVGSATIASTRR 368 >gi|171913655|ref|ZP_02929125.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Verrucomicrobium spinosum DSM 4136] Length = 365 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 112/375 (29%), Positives = 182/375 (48%), Gaps = 24/375 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++ A+SGGVDSSV AALL R+G+DV G ++ + + + G C +D+ DAR V Sbjct: 1 MKILAALSGGVDSSVAAALLVREGHDVSGAYMKNWINEEN--IIGHCPWQEDIEDARAVA 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + V + +R V+ + Y G TP P V CNR +KF L + G D Sbjct: 59 DQLGIEFRVVNLMREYREKVVKYLLAGYQEGITPNPDVMCNREMKFGVLWEWAKDHGYDA 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R L + I+ R +D +DQ+YFL +Q+ RFP+G + K V Sbjct: 119 IATGHYARWELPA--EPGAHPIVRRGVDGNKDQTYFLAMMRPEQVEIARFPIGHLPKAEV 176 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R A +GL A+K DSQ ICF+ + K D ++ G+IV+L G++LG H G+ Sbjct: 177 RVEASRLGLKTAEKKDSQGICFIGEVKMEDFLRTFVPD--NPGNIVNLEGKVLGEHRGLH 234 Query: 261 NYTIGQRRGLGVAMG---EPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 YT+GQR+GL V + VV ++ ++V ++ + ++ R+ Sbjct: 235 LYTLGQRKGLRVPSNLYKQAYVVVAKRPAANELVVAIEQA-DTPLLWARKAILTQISTTG 293 Query: 318 DAVVDGFKCFVKIRSSQDPVPV-------FVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 ++ + + R P F + + + +++ + + GQ C Y Sbjct: 294 PDLLVPRRLNAQPRYR---CPAGMAMYTPFEREDGWAAELVYDEPQRALTPGQICALYDG 350 Query: 371 DSNEARVLGGGIISG 385 D ++LGG + Sbjct: 351 D----QLLGGAVFES 361 >gi|330998316|ref|ZP_08322141.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paraprevotella xylaniphila YIT 11841] gi|329568705|gb|EGG50506.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paraprevotella xylaniphila YIT 11841] Length = 378 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 124/384 (32%), Positives = 196/384 (51%), Gaps = 31/384 (8%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + +V+V MSGG+DSS V +L+ +GY+V+GVT+++++ + G + DAR Sbjct: 4 ERKKVLVGMSGGIDSSAVCLMLQDEGYEVVGVTMRVWDLARQFTDAGQ-EYPDFIQDARA 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + HYV D F++ V+ F Y AG TP PCV CN KF L+ +LG Sbjct: 63 LAARLGIVHYVADERTAFKDIVVRDFVDEYLAGRTPNPCVMCNPAFKFRVLVEWADKLGC 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY+R + + + +D ++DQSYFL+ Q L FPLG M+KE Sbjct: 123 DYIATGHYVRVK-----EEDGHYALYCGVDGKKDQSYFLWRLGQDVLSRCIFPLGAMRKE 177 Query: 199 SVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQILG 254 VR G ++ A +S +ICF+ Y D ++ + EG V + G+++G Sbjct: 178 DVRGYLARKGFEMKARSGESMEICFI-DKDYRDFLREQVPDLDRCVGEGKFVDVQGRVIG 236 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H G +T+GQR+GLG+A+G+P +V+ L+ + V++G + L+ + + G Sbjct: 237 THCGFPYFTVGQRKGLGIALGKPAYVLRLNARKNTVMLGDADDLDASHMLVS-----GMR 291 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV----------YVDFEKSEVGVASGQA 364 + ED D V+IR P+P V+R + V F++ V GQ+ Sbjct: 292 MPEDGTWDDGSLSVRIRYRSRPIPCTVRRVKNLFPEEGGSEELGLVRFKEKASAVTPGQS 351 Query: 365 CVFYTSDSNEARVLGGGIISGSKR 388 VFY D +GG I GS+R Sbjct: 352 AVFYVGDKM----VGGAYI-GSQR 370 >gi|218128478|ref|ZP_03457282.1| hypothetical protein BACEGG_00048 [Bacteroides eggerthii DSM 20697] gi|317475697|ref|ZP_07934957.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA] gi|217989369|gb|EEC55682.1| hypothetical protein BACEGG_00048 [Bacteroides eggerthii DSM 20697] gi|316908153|gb|EFV29847.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA] Length = 362 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 116/378 (30%), Positives = 188/378 (49%), Gaps = 33/378 (8%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 D N + RV+V MSGG+DS+ +L+ GY+++G+T+ ++ + Sbjct: 5 DMNKAEKRVLVGMSGGIDSTATCLMLREQGYEIVGLTMWVWGDEPSE------------- 51 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 AR++ ++ + HYV D + FR ++ F Y G TP PCV CN KF L Sbjct: 52 -ARQLAQSMGIEHYVADERKAFREVIVRNFIDEYRQGRTPNPCVMCNPLFKFRILTEWAD 110 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 +L +ATGHY R ++ + + D ++DQSYFL+ Q L FPLG Sbjct: 111 RLDCRYIATGHYTRL-----EERNGKIYIVAGDDEKKDQSYFLWRLGQDVLRRCLFPLGT 165 Query: 195 MKKESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNG 250 K VRD R G + A++ +S ++CF+ +G Y D ++ + I G V+ G Sbjct: 166 YTKLQVRDYLRGKGYALKAEEGESMEVCFI-KGDYRDFLREYSPEIDKEVGPGWFVNSEG 224 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 LG H G YT+GQR+GL +A+G+P +V+ ++ + V++G E L+ + + N Sbjct: 225 VKLGEHKGFPYYTVGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKTEYMLAEQDNL 284 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 + + V + V+IR P+ V+R +DG + V F+ +A GQ+ VFY Sbjct: 285 IDEA----EVFGNEELTVRIRYRSKPIACSVKRLEDGRLLVHFQTEASAIAPGQSAVFYV 340 Query: 370 SDSNEARVLGGGIISGSK 387 RV+GG I+ + Sbjct: 341 G----KRVVGGSFIASQR 354 >gi|160890666|ref|ZP_02071669.1| hypothetical protein BACUNI_03111 [Bacteroides uniformis ATCC 8492] gi|270295763|ref|ZP_06201963.1| tRNA methyl transferase [Bacteroides sp. D20] gi|317479803|ref|ZP_07938923.1| tRNA methyl transferase [Bacteroides sp. 4_1_36] gi|156859665|gb|EDO53096.1| hypothetical protein BACUNI_03111 [Bacteroides uniformis ATCC 8492] gi|270273167|gb|EFA19029.1| tRNA methyl transferase [Bacteroides sp. D20] gi|316904009|gb|EFV25843.1| tRNA methyl transferase [Bacteroides sp. 4_1_36] Length = 364 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 120/376 (31%), Positives = 187/376 (49%), Gaps = 33/376 (8%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N RV+V MSGG+DS+ +L+ GY++IG+T+ ++ A Sbjct: 2 NKPGKRVLVGMSGGIDSTATCLMLREQGYEIIGLTMWVWGDEPVE--------------A 47 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R + D++ + HYV D + FR ++ F Y G TP PCV CN KF L +L Sbjct: 48 RSLADSMGIEHYVADERDAFRRIIVRNFIDEYRRGRTPNPCVMCNPLFKFRILTEWADRL 107 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 G +ATGHY R ++ + + D ++DQSYFL+ Q+ L FPLG Sbjct: 108 GCAFVATGHYTRL-----EERNGKTYIVAGDDDKKDQSYFLWRLGQEVLKRCIFPLGAFT 162 Query: 197 KESVRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQI 252 K VR R+ G + A++ +S ++CF+ +G Y D ++ + I G V+ G Sbjct: 163 KMQVRGYLRDKGYTLKAEEGESMEVCFI-KGDYRDFLREHSPEIDSEVGPGWFVNSEGVK 221 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 LG H G YTIGQR+GL +A+G+P +V+ ++ + V++G E L+ + E N + Sbjct: 222 LGGHKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKAGYMLAEEENLID 281 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 + F + V+IR P+P V+R +DG + V F +A GQ+ VFY Sbjct: 282 EAEF----FGSEELTVRIRYRSKPIPCTVKRLEDGRLLVRFLSEASAIAPGQSAVFYVG- 336 Query: 372 SNEARVLGGGIISGSK 387 RV+GG I+ + Sbjct: 337 ---RRVVGGSFIASQR 349 >gi|301107608|ref|XP_002902886.1| tRNA-specific 2-thiouridylase mnmA, putative [Phytophthora infestans T30-4] gi|262098004|gb|EEY56056.1| tRNA-specific 2-thiouridylase mnmA, putative [Phytophthora infestans T30-4] Length = 416 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 118/399 (29%), Positives = 179/399 (44%), Gaps = 46/399 (11%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LLKR GY V GV ++ ++ + + +C + D ++VC+ + + Sbjct: 1 MSGGVDSSVAALLLKRQGYHVTGVYMKNWDPSDE-EGESACPVDSEYVDVQKVCEQLGIE 59 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 + + + + N V P + Y G TP P + CNR +KF +Q+GAD +ATGHY Sbjct: 60 AQMVNLVQSYWNQVFAPCLAGYEEGLTPNPDILCNREIKFKAFTEFAKQIGADCVATGHY 119 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 R + +C D +DQSYFL + + ++ FPLG M+K VR +A Sbjct: 120 AALRP---AEKGGPPNLCAAEDESKDQSYFLSSVDGKAFANVLFPLGGMRKTEVRQIAES 176 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 GL A K DS ICF+ + + D + + +G + G+ + H+G YT+GQ Sbjct: 177 EGLCTATKKDSVGICFIGKRNFADFIHQYIQR--QDGYFYTVGGEKMHPHHGFTAYTVGQ 234 Query: 267 RRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLR--EINWLGDGLFEDAVV 321 L M FVV K VIV +L ++ + NW+ L + Sbjct: 235 GARLQ-GMSAKWFVVGKHKFDHSVIVAEGTRNPALFSDALFASAEQFNWMAGDLPPELRD 293 Query: 322 DG-FKCFVKIRSSQDPVPVFVQR----------------------NDDGV--------YV 350 G +CF ++R QD + N++GV V Sbjct: 294 TGRMRCFYRVRYRQDLDKCTISLVSNREARASASKLHDWQPELVANEEGVENGEKIYLRV 353 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389 DF+ + GV QA V Y SD GGG I+ + ++ Sbjct: 354 DFDHPQRGVTPEQALVLYRSD---GLCYGGGPIAAAGQT 389 >gi|282861250|ref|ZP_06270315.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces sp. ACTE] gi|282563908|gb|EFB69445.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces sp. ACTE] Length = 377 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 143/385 (37%), Positives = 193/385 (50%), Gaps = 23/385 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDA 76 + +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G CC +D DA Sbjct: 7 RPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDA 65 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL L Sbjct: 66 RRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALAL 125 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194 G D + TGHY L +DG R + R D+ +DQSY L ++QL FPLGD Sbjct: 126 GFDAVCTGHYATVVL--TEDGT--RELHRASDMAKDQSYVLGVLDEKQLAHAMFPLGDTL 181 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 K+ +R A GL +A K DS DICF+ G + G A EGDIV G +G Sbjct: 182 TTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLANRLGGPA-EGDIVDEAGTKVG 240 Query: 255 RHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 H G +TIGQR+GL + G+P +V+ + ++ V VGP E+L+V + W Sbjct: 241 THEGAFGFTIGQRKGLRIGHPAPDGKPRYVLDISPVNNTVTVGPVEALDVTALTAIRPRW 300 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 G A ++R+ V + D + V F + GVA GQA V Y Sbjct: 301 CG-----TAPSGPGTYTAQLRAHGGETEVTAELVDGTLNVSFTEPVRGVAPGQAVVLYDG 355 Query: 371 DSNEARVLGGGIISGSKRSDAVEES 395 RV+G I+ + R + S Sbjct: 356 ----TRVVGSATIATTVRRETAAAS 376 >gi|329936861|ref|ZP_08286540.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Streptomyces griseoaurantiacus M045] gi|329303786|gb|EGG47670.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Streptomyces griseoaurantiacus M045] Length = 376 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 142/388 (36%), Positives = 197/388 (50%), Gaps = 24/388 (6%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAG 70 D + + +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G CC Sbjct: 4 DTPQTRRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 62 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 +D DARR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 63 EDSRDARRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALL 122 Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 LG D + TGHY + L +DG R + R D+ +DQSY L ++QL F Sbjct: 123 DKALALGFDAVCTGHYAQVILR--EDGT--RELHRASDMAKDQSYVLGVLDERQLAHAMF 178 Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 PLGD KE +R A GL +A K DS DICF+ G + + EGDIV Sbjct: 179 PLGDTVTTKEEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLSKRLGRA--EGDIVDE 236 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 +G +G H G +TIGQR+GL + G+P +V+ + ++ V VGP +L+V + Sbjct: 237 SGTKVGTHEGAFGFTIGQRKGLRIGTPAADGKPRYVLDISPVTNTVTVGPAAALDVDALT 296 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 + W G A ++R+ + V + D + V F GVA GQA Sbjct: 297 AVKPRWCG-----TAPSGPGTYTAQLRAHGEETEVSAELVDGALEVTFTTPVRGVAPGQA 351 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAV 392 V Y RV+G I+ ++R+ A Sbjct: 352 VVLYQG----TRVVGSATIASTRRAVAA 375 >gi|260889979|ref|ZP_05901242.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Leptotrichia hofstadii F0254] gi|260860585|gb|EEX75085.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Leptotrichia hofstadii F0254] Length = 371 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 124/378 (32%), Positives = 197/378 (52%), Gaps = 23/378 (6%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD 72 +++K + +VVV MSGG+DSSV A LLK+ GY+VIGVTL+ + +CC+ D Sbjct: 6 EMNKKLDEKKVVVGMSGGIDSSVAALLLKQQGYEVIGVTLKHLPDELSENPGKTCCSLDD 65 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 + DAR C T+ + HYV + E F+ V+ F Y AG+TP PCV C+ VK LL Sbjct: 66 INDARYTCYTLGIPHYVLNVVEEFKKDVMEYFIKMYNAGKTPSPCVICDEKVKIKKLLEF 125 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 ++G ++TGHY + ++ + +DQ+Y L+ + + FPL Sbjct: 126 ADKMGIKYISTGHYSKVSENN--------MLLWDKNNRKDQTYMLYRLDKDVVERFLFPL 177 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 + +K VR++AR+ G+ +K DSQ ICF G Y +K++ +G+ V NG+I Sbjct: 178 AEYEKSEVREIARQNGVHTHNKPDSQGICFAPNG-YIPFLKKVLGNDVKKGNFVDKNGKI 236 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 +G H G YT+GQRRGLG+ +G+P FV+ L ++ V+VG E L + I + Sbjct: 237 IGEHIGYQFYTVGQRRGLGLNLGKPFFVLELRPETNEVVVGDFEELLIKEIEVIN----R 292 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR------NDDGVYVDFEKSEVGVASGQACV 366 ++ + G K + R S V ++ N++ + +F++ + GQ V Sbjct: 293 KFHYDLKEIIGKKLTARPRFSSKGVVGKLKLLKSEKSNENRIIFEFDEKTHENSEGQHIV 352 Query: 367 FYTSDSNEARVLGGGIIS 384 FY + ++GGG I Sbjct: 353 FYLDN----EIVGGGEIK 366 >gi|319900025|ref|YP_004159753.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides helcogenes P 36-108] gi|319415056|gb|ADV42167.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides helcogenes P 36-108] Length = 357 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 120/373 (32%), Positives = 190/373 (50%), Gaps = 33/373 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + RV+V MSGG+DS+ +LK GY+++G+T+ ++ A ++ Sbjct: 5 EKRVLVGMSGGIDSTATCLMLKGQGYEIVGLTMWVWGDEPVE--------------AGQL 50 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D++ + HY+ D E FR ++ F Y+ G TP PCV CN KF L +L Sbjct: 51 ADSMGIEHYIVDERESFRRIIVQNFIDEYSGGRTPNPCVMCNPLFKFRILTEWADKLCCK 110 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R ++ + + D ++DQSYFL+ Q L FPLG K Sbjct: 111 YIATGHYTRL-----EEINHKIYIIAGDDDKKDQSYFLWRLGQDVLKRCIFPLGTYTKIQ 165 Query: 200 VRDLAREMGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGR 255 VR+ R+ G + A++ +S ++CF+ +G Y D +K + I E G V+ G LG Sbjct: 166 VREYLRDNGYTVKAEEGESMEVCFI-KGDYRDFLKEYSPEIDSEIGSGWFVNSEGVKLGE 224 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H G YTIGQR+GL +A+G+P +V+ ++ + V++G E L+ + + N +G Sbjct: 225 HKGFPYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLKTRYMLAEQENLTDEGE 284 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374 F ++ V V+IR P+P V+R +DG + V F +A GQ+ VFY Sbjct: 285 FFESDV----LTVRIRYRSKPIPCTVKRLEDGRLLVHFLIDASAIAPGQSAVFYID---- 336 Query: 375 ARVLGGGIISGSK 387 RV+GG I+ + Sbjct: 337 KRVVGGAFIASQR 349 >gi|195438780|ref|XP_002067310.1| GK16353 [Drosophila willistoni] gi|194163395|gb|EDW78296.1| GK16353 [Drosophila willistoni] Length = 380 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 111/386 (28%), Positives = 179/386 (46%), Gaps = 24/386 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 VVV +SGGVDS++ A LLK GY+V+GV ++ ++ + G C D+ DA C Sbjct: 5 VVVGISGGVDSAISAHLLKERGYNVLGVFMRNWDE---NDEAGRCSGELDLKDAEWACQR 61 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVL 141 +++ +Y +++ AV F Y G TP P + CN+ +KF + R+ L D + Sbjct: 62 LDIELRQVNYVKQYWMAVFTQFLDDYQQGLTPNPDILCNKHIKFDLFHTHCRERLQYDAV 121 Query: 142 ATGHYIRS---RLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 ATGHY + + P D +DQ++FL +Q+ L FPLG M K Sbjct: 122 ATGHYAANSWGNYLEQQLQGEEPRLLIPQDKFKDQTFFLSGISQRSLRHTMFPLGCMLKT 181 Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRH 256 V+ LAR++GL +A+K +S ICFV + + + G + ++ G +G+H Sbjct: 182 EVKQLARQIGLQRLAEKRESTGICFVGKRNFKSFIGEYL--SPRPGPFIDIDTGCEVGQH 239 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGD 313 GI +TIGQR L + +P FV + + + V +L +R+ + INWL Sbjct: 240 EGIHQWTIGQRCRLSSFL-QPYFVARKEPLRNIIYVASGHEHPALHSNRLTIDPINWLCS 298 Query: 314 GLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 V +G +C + + ++ V + + V + + GQ VFY Sbjct: 299 TAKTRYVQEGRLRCRFRFQHTKPLVNCSIIEEE----VVLDSPLRAITPGQYAVFYDD-- 352 Query: 373 NEARVLGGGIISGSKRSDAVEESLLS 398 LG I SK D +E+ + Sbjct: 353 --QACLGSARILRSKPLDQLEQQTVK 376 >gi|205815001|sp|A1R863|MNMA_ARTAT RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 379 Score = 381 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 144/383 (37%), Positives = 195/383 (50%), Gaps = 27/383 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV+GV L L + + R GS CC +D DA R Sbjct: 1 MRVLAAMSGGVDSAVAAARAVEAGHDVVGVHLAL-SRMPGTLRTGSRGCCTIEDSRDAWR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 CD + + +YV+D+ ERF+ V+ F YAAG TP PC+ CN +KF+ LL LG Sbjct: 60 ACDVLGIPYYVWDFSERFKEDVVQDFIDEYAAGRTPNPCMRCNERIKFAALLEKAIALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197 D + TGHY + V +D R + R D +DQSY L T +QL FPL D K Sbjct: 120 DAVCTGHYAK----VIEDADGNRELHRAADWAKDQSYVLGVLTHEQLKHSMFPLADTPSK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR A GL +A+K DS DICF+ G + GDIV G +G H Sbjct: 176 AEVRAEAERRGLSVANKPDSHDICFISDGDTRGWLAEKIDMTT--GDIVDETGAKVGEHP 233 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G +T+GQRRGL + G+P FV+ + ++V+VGP L + I +++W G Sbjct: 234 GANAFTVGQRRGLKLGTPAADGKPRFVLEIRPKENKVVVGPEALLAIDEIRGIKVSWAGL 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR----NDDGVY-----VDFEKSEVGVASGQA 364 + E A F C ++R+ DPVP + ++ GV V GVA GQ Sbjct: 294 PISEVATGAEFDCHAQVRAHGDPVPAIARVEAVTDESGVERAQLVVTLTDPLRGVAPGQT 353 Query: 365 CVFYTSDSNEARVLGGGIISGSK 387 V Y +RVLG I ++ Sbjct: 354 VVLYQG----SRVLGQATIDAAR 372 >gi|148269543|ref|YP_001244003.1| tRNA-specific 2-thiouridylase MnmA [Thermotoga petrophila RKU-1] gi|166235088|sp|A5IJQ4|MNMA_THEP1 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|147735087|gb|ABQ46427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermotoga petrophila RKU-1] Length = 358 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 126/372 (33%), Positives = 185/372 (49%), Gaps = 18/372 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR---KASKRKGSCCAGQDVYDAR 77 M+V VA+SGGVDS+V LL ++G++V ++ + +K CC+ D DA Sbjct: 1 MKVGVALSGGVDSAVALYLLLKEGHEVKAFHMKTKEDEFFIRKEIKKKVCCSPSDTADAM 60 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 R+ + V + D +E FR VI PF S G TP PCV CNR VKF L+ G Sbjct: 61 RIAHFLGVEIEIVDVKEIFREKVIEPFKSDLLKGLTPNPCVHCNRFVKFGYLMDYVLNQG 120 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D A+GHY R + R+++ + +DL++DQSYFL ++ L FP G K Sbjct: 121 FDAFASGHYARIEFS---EKYGRKVIKKGVDLKKDQSYFLARIEPWRIERLIFPNGIYTK 177 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 E +R +A E G+ +A K +SQD+CF+ G + +K EGD++ G+++GRH Sbjct: 178 EEIRKIAEEAGIHVAKKQESQDVCFIPDGSIENFLKD-EGITLKEGDLITPEGEVVGRHF 236 Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G YTIGQR+G + G +V + V+V E + + + W + Sbjct: 237 GYPLYTIGQRKGFKIEKFGRRYYVRGKIPEKNVVVVSDLEDVFFSGLIAEDPVWHVE--- 293 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 V + FKC ++R + P V+ D+ V V FEK V GQ FY D+ Sbjct: 294 ---VPEEFKCVCRVRKKSEEAPAVVKLRDNEVEVRFEKKVFAVTPGQIAAFYDGDT---- 346 Query: 377 VLGGGIISGSKR 388 +LGG II R Sbjct: 347 LLGGAIIKEGIR 358 >gi|239928784|ref|ZP_04685737.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291437105|ref|ZP_06576495.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces ghanaensis ATCC 14672] gi|291340000|gb|EFE66956.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces ghanaensis ATCC 14672] Length = 378 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 141/385 (36%), Positives = 192/385 (49%), Gaps = 24/385 (6%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAG 70 D + + +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G CC Sbjct: 3 DTPQPSRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 61 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 +D DARR D I + YV+D +RFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 62 EDSRDARRAADVIGIPFYVWDLADRFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALL 121 Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 LG D + TGHY + L +DG R + R D+ +DQSY L +QL F Sbjct: 122 DKALALGFDAVCTGHYAKVVLR--EDGT--RELHRASDMAKDQSYVLGVLDDRQLAHAMF 177 Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 PLGD KE +R A GL +A K DS DICF+ G + EGDIV Sbjct: 178 PLGDTVTTKEEIRAEAERRGLAVAKKPDSHDICFIADGDTRGFLANRLGRA--EGDIVDE 235 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 +G +G H G +TIGQR+GL + G+P +V+ + ++ V VGP +L+V + Sbjct: 236 SGAKVGTHEGAYGFTIGQRKGLRIGTPAPDGKPRYVLDISPVTNTVTVGPAAALDVTALT 295 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 W G A ++R+ V + D + V F + GVA GQA Sbjct: 296 AIRPRWCG-----AAPEGPGTYTAQLRAHGGETEVTAEPVDGELRVRFTEPVRGVAPGQA 350 Query: 365 CVFYTSDSNEARVLGGGIISGSKRS 389 V Y RV+G I+ + RS Sbjct: 351 IVLYDG----TRVVGSATIATTVRS 371 >gi|78776909|ref|YP_393224.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfurimonas denitrificans DSM 1251] gi|123550559|sp|Q30SP2|MNMA_SULDN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|78497449|gb|ABB43989.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfurimonas denitrificans DSM 1251] Length = 341 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 129/367 (35%), Positives = 203/367 (55%), Gaps = 33/367 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V++ MSGGVDS+V A LK +GY+V G+ ++L+++ + AR+ Sbjct: 3 KKVLLGMSGGVDSTVSAMFLKEEGYEVEGLYMKLHSNPGYHEIHE--------ARARKAA 54 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + +V D +E F V PF +YA G+TP PC CNR++KF ++L ++GAD Sbjct: 55 DFLGIKLHVIDLQEIFNEKVFKPFVDTYAKGKTPNPCALCNRSLKFGEMLKFAYKIGADF 114 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHYI++ DGK D +DQSYFLF ++ L L FPLGD KK + Sbjct: 115 VATGHYIKT------DGKYFYE---ADDDTKDQSYFLFYVNKEILPRLLFPLGDRKKSEI 165 Query: 201 RDLAREM-GLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 ++LA + GL A + +S +ICFV+ Y D+++ + G+++ +G+++G H G Sbjct: 166 KELAASINGLATFASQRESSEICFVETT-YTDLLQDYVE-VDKVGEVLDTSGKVVGEHKG 223 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V +P +VV ++ + +++IVG +E L + + L +N D Sbjct: 224 YMHYTIGKRRGFSVNGAHDPHYVVSINPDKNQIIVGKKEDLACNSVVLNNLNLYSDE--- 280 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 F VK+R +P V DD +V ++S GVA GQA VFY + ++ Sbjct: 281 ----KSFDTTVKLRYRTKAIPCHVDIIDDKAHVTLKESVFGVAVGQAAVFYDGN----KL 332 Query: 378 LGGGIIS 384 LGGG I Sbjct: 333 LGGGWIE 339 >gi|167721162|ref|ZP_02404398.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Burkholderia pseudomallei DM98] Length = 296 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 105/310 (33%), Positives = 149/310 (48%), Gaps = 22/310 (7%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LLK GYDV+G+ ++ + + C QD D V D I + Sbjct: 1 MSGGVDSSVTAWLLKEQGYDVVGLFMKNWEDDDDGE---YCSTRQDWIDVVSVADLIGID 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 ++ +++ V F Y+AG TP P V CN +KF L LGA +ATGHY Sbjct: 58 VEAVNFAAEYKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMSLGAQTIATGHY 117 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 R R G R + + D +DQSYFL Q QL FPLG++ K VR++A + Sbjct: 118 ARVRERDG-----RFELLKAFDHTKDQSYFLHRLNQAQLSKTMFPLGEIPKTRVREIAAQ 172 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQ 266 +GL A K DS ICF+ + + D + R G + +G+ +G H G+ YT GQ Sbjct: 173 IGLPNAKKKDSTGICFIGERPFRDFLNRYLP--TKPGPMKTPDGKTVGEHIGLAFYTFGQ 230 Query: 267 RRGLGV-----AMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFED 318 R+G+G+ GEP FV D S+ + V L + ++W+ + Sbjct: 231 RKGIGLGGSKDGSGEPWFVAAKDIASNTLYVVQGHDHPWLRSRELVAGNVSWVAG----E 286 Query: 319 AVVDGFKCFV 328 DG +C Sbjct: 287 PPADGARCGA 296 >gi|302554308|ref|ZP_07306650.1| tRNA methyl transferase [Streptomyces viridochromogenes DSM 40736] gi|302471926|gb|EFL35019.1| tRNA methyl transferase [Streptomyces viridochromogenes DSM 40736] Length = 376 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 142/387 (36%), Positives = 194/387 (50%), Gaps = 24/387 (6%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAG 70 D + + +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G CC Sbjct: 3 DTPQRSRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 61 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 +D DARR D I + YV+D +RFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 62 EDSRDARRAADVIGIPFYVWDLADRFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALL 121 Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 LG D + TGHY + V +DG R + R D+ +DQSY L +QL F Sbjct: 122 DKALALGFDAVCTGHYAQV--IVHEDGT--RELHRASDMAKDQSYVLGVLDDRQLAHAMF 177 Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 PLGD K+ +R A GL +A K DS DICF+ G + EGDIV Sbjct: 178 PLGDTVTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLADRLGKA--EGDIVDE 235 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 +G LG H G +TIGQR+GL + G+P +V+ + + V VGP +L+V + Sbjct: 236 SGAKLGTHEGAFGFTIGQRKGLRIGTPAPDGKPRYVLDISPVDNTVTVGPASALDVSALT 295 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 + W G A ++R+ V + D + V F + GVA GQA Sbjct: 296 AVKPRWCGV-----APTGPGTYTAQLRAHGGETEVTAELVDGSLEVTFSEPVRGVAPGQA 350 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDA 391 V Y RV+G I+ +KR+ A Sbjct: 351 IVLYDG----TRVVGSATIASTKRTPA 373 >gi|268536380|ref|XP_002633325.1| Hypothetical protein CBG06062 [Caenorhabditis briggsae] Length = 377 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 111/374 (29%), Positives = 188/374 (50%), Gaps = 20/374 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVV+ MSGGVDS+V A LLK+ G+DV+G+ + ++S++ +C +D DAR VC+ Sbjct: 5 RVVIGMSGGVDSAVSAFLLKQKGFDVVGLHMINWDSQEEG--SSTCPRSKDEADARNVCN 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 +N+ + ++ + + N V + F +Y G T +P +DCN ++KF V ++ AD Sbjct: 63 RLNIPFHTVNFVKEYWNHVFLKFLENYKIGRTTVPDIDCNYSIKFDAFHKVAQETFDADF 122 Query: 141 LATGHYIRSRLYVGDDGKRRR---IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 +ATGHY + ++ + D +DQ++FL TQ+QL FPLG ++K Sbjct: 123 IATGHYATTSFGDFQQNRKHSEAIRLFSGRDPLKDQTFFLCTVTQEQLKRAMFPLGSLQK 182 Query: 198 ESVRDLAREMGLD-IADKSDSQDICFVQQGK-YFDVVKRINAGIALEGDIVHLNGQILGR 255 V+ +A + G + K +S ICF+ + K + D + G IV +G+ +G+ Sbjct: 183 SEVKRIAEQQGFHRVVKKPESMGICFIGKKKRFSDFLDEYIE--PKPGRIVLKDGKQIGK 240 Query: 256 HNGIINYTIGQR---RGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREIN 309 H+GI +TIG+R + L FV + ++ V+ L R + N Sbjct: 241 HHGIHQFTIGKRIHGKYLNERSHFGFFVSEIRSDTGDVVACNGSHHSDLYATRFLINRPN 300 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 W+ + + K +I+ + PVP V++++ + V+ + + GQ CVFY Sbjct: 301 WIPSSDPLEEIS-PSKILCRIQRTHPPVPCKVEKSEHYLSVEPKIPLRATSPGQMCVFY- 358 Query: 370 SDSNEARVLGGGII 383 + E LGGG I Sbjct: 359 --TTENECLGGGEI 370 >gi|221195808|ref|ZP_03568861.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Atopobium rimae ATCC 49626] gi|221184282|gb|EEE16676.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Atopobium rimae ATCC 49626] Length = 389 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 119/387 (30%), Positives = 180/387 (46%), Gaps = 37/387 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V + MSGGVDS++ AALL G+DV V ++ ++ C D+ DA RV Sbjct: 7 KVYLGMSGGVDSALSAALLLEQGFDVHAVYMRNWSKDLPGFH---CPWADDLADAERVAV 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 ++ + V+D E+ ++ V+ SYA G TP P V CN+TVKF GAD + Sbjct: 64 SLGIDLAVWDCEKEYKETVVDYLLDSYAHGYTPNPDVMCNQTVKFGTFAKRAFSEGADYI 123 Query: 142 ATGHYIR-----SRLYVGDD------------GKRRRIMCRPMDLERDQSYFLFATTQQQ 184 ATGHY R GDD G + R D +DQ+YFL+ + Sbjct: 124 ATGHYARLASGEKNACGGDDANNTTGMAGAMHGSGTSCLMRAADEHKDQTYFLWRVPSEI 183 Query: 185 LCDLRFPLGDM-KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243 FP+GD+ K VR + + GL I +K DS ICF+ + ++A G Sbjct: 184 FDRTIFPIGDIPTKAEVRAMCADRGLGIENKPDSDGICFIGPVGLRTFL--LDAFERKTG 241 Query: 244 DIVH-LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE---SLE 299 DI+ +G+ LG H+G +TIGQR+GL V G +VV D N++ V V +L Sbjct: 242 DIIEWESGKKLGEHDGAFLFTIGQRKGLSVGGGPAHYVVATDTNTNTVYVTSDPLSAALW 301 Query: 300 VHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVG 358 + + + +W+ + D V+ R + + P + + + + + +E Sbjct: 302 TKTMDIVDTHWISGCVPADGA-----YTVRTRHTGELRPCMLTKVSATTMRITYEVPVRT 356 Query: 359 VASGQACVFYTSDSNEARVLGGGIISG 385 VA GQ+ VFY +GGGII Sbjct: 357 VAPGQSAVFYDG----LVCIGGGIIER 379 >gi|308491228|ref|XP_003107805.1| hypothetical protein CRE_12780 [Caenorhabditis remanei] gi|308249752|gb|EFO93704.1| hypothetical protein CRE_12780 [Caenorhabditis remanei] Length = 378 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 116/375 (30%), Positives = 185/375 (49%), Gaps = 21/375 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVV+ MSGGVDS+V A LLKR G+DVIGV + ++S++ +C +D DAR VCD Sbjct: 5 RVVIGMSGGVDSAVSAFLLKRRGFDVIGVHMVNWDSQEEG--TSNCPRSKDESDARNVCD 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 +N+ + ++ + + N V + F +Y G T +P +DCN +KFS V ++ AD Sbjct: 63 KLNIPFHTVNFVKEYWNDVFLRFLENYKMGRTVVPDIDCNHFIKFSAFHKVAQERFDADF 122 Query: 141 LATGHYIRSR---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 +ATGHY + + + D +DQ++FL TQ+QL FPLG ++K Sbjct: 123 IATGHYATTSFGDFQQSRNASEEIRLFSGRDPLKDQTFFLCTVTQEQLKRAMFPLGSLQK 182 Query: 198 ESVRDLAREMGLD-IADKSDSQDICFVQQGK-YFDVVKRINAGIALEGDIVHLNGQILGR 255 V+ +A + G +A K +S ICFV + K + + + G IV NG+ +G Sbjct: 183 TEVKRIAEQEGFHEVAKKPESMGICFVGKKKRFSEFLDEYIE--PKSGKIVLKNGKKIGN 240 Query: 256 HNGIINYTIGQRRGLGVAMGEP----LFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308 H+GI +TIG+R G + E FV ++ + ++ +L R + Sbjct: 241 HHGIHQFTIGKRIN-GTYLEERSHFGFFVSEINSETGDIVACEGSHHPNLYATRFLINRP 299 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 +W+ + + +I+ + PV V+ +D+ + V A GQ CVFY Sbjct: 300 SWISNSDDPLKSHPPSEILCRIQRTHPPVSCLVEYSDENLSVIPRIPLRATAPGQMCVFY 359 Query: 369 TSDSNEARVLGGGII 383 + + LGGG I Sbjct: 360 ---TTKNECLGGGEI 371 >gi|281411738|ref|YP_003345817.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermotoga naphthophila RKU-10] gi|281372841|gb|ADA66403.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermotoga naphthophila RKU-10] Length = 358 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 123/372 (33%), Positives = 183/372 (49%), Gaps = 18/372 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR---KASKRKGSCCAGQDVYDAR 77 M+V VA+SGGVDS+V LL ++G++V ++ + +K CC+ D DA Sbjct: 1 MKVGVALSGGVDSAVALYLLLKEGHEVKAFHMKTKEDEFFIRKEIKKKVCCSPSDTADAM 60 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 R+ + V + D +E FR VI PF G TP PC CNR VKF L+ G Sbjct: 61 RIAHFLGVEIEIVDVKEIFREKVIEPFKRDLLKGLTPNPCAHCNRFVKFGYLMDYVLNQG 120 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D A+GHY R + R+++ + +DL++DQSYFL ++ L FP G K Sbjct: 121 FDAFASGHYARIEFS---EKYGRKVIKKGVDLKKDQSYFLARIEPWRIERLIFPNGIYTK 177 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 E +R +A E G+ +A K +SQD+CF+ G + +K +GDI+ G+++GRH Sbjct: 178 EEIRKIAEEAGIHVAKKQESQDVCFIPDGSIENFLKD-EGITLKDGDIITPEGEVVGRHF 236 Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G YTIGQR+G + G +V + V+V E + + + W + Sbjct: 237 GYPLYTIGQRKGFKIEKFGRRYYVRGKIPEKNVVVVSDLEDVFFSGLIAEDPVWHVE--- 293 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 V + F+C ++R + P V+ D+ V V FEK V GQ FY D+ Sbjct: 294 ---VPEEFRCVCRVRKKSEEAPAVVKVKDNEVEVRFEKKVFAVTPGQIAAFYDGDT---- 346 Query: 377 VLGGGIISGSKR 388 +LGG II R Sbjct: 347 LLGGAIIKEGIR 358 >gi|237714361|ref|ZP_04544842.1| conserved hypothetical protein [Bacteroides sp. D1] gi|229445525|gb|EEO51316.1| conserved hypothetical protein [Bacteroides sp. D1] Length = 353 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 114/369 (30%), Positives = 181/369 (49%), Gaps = 33/369 (8%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83 +V MSGG+DS+ +L+ GY+++GVT++++ DAR + + + Sbjct: 1 MVGMSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARELAERM 46 Query: 84 NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143 + HYV D F+ ++ F Y G TP PCV CN KF L +L +AT Sbjct: 47 GIEHYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNCAWVAT 106 Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 GHY R ++ + D ++DQSYFL+ Q L FPLGD K VR+ Sbjct: 107 GHYSRL-----EEKNGNIYIVAGDDDKKDQSYFLWRLGQDVLKRCIFPLGDYTKVKVREY 161 Query: 204 AREMGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGIALE---GDIVHLNGQILGRHNGI 259 E G + + +S ++CF+ +G Y D ++ + E G V+ G LG+H G Sbjct: 162 LAEKGYEAKSKEGESMEVCFI-KGDYRDFLREQCPELDSEIGSGWFVNSEGVKLGKHKGA 220 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YTIGQR+GL +A+G+P +V+ ++ + V++G + LE + + + E Sbjct: 221 PYYTIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLETEYMLAEQ----DKIVDERE 276 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + V+IR P+P V+R +DG + V F ++ +A GQ+ VFY RVL Sbjct: 277 LFGCENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAIAPGQSAVFYDG----RRVL 332 Query: 379 GGGIISGSK 387 GG I+ + Sbjct: 333 GGAFIASQR 341 >gi|21223845|ref|NP_629624.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces coelicolor A3(2)] gi|256785060|ref|ZP_05523491.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces lividans TK24] gi|289768953|ref|ZP_06528331.1| tRNA methyl transferase [Streptomyces lividans TK24] gi|6226260|sp|O86583|MNMA_STRCO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|3402255|emb|CAA20191.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces coelicolor A3(2)] gi|289699152|gb|EFD66581.1| tRNA methyl transferase [Streptomyces lividans TK24] Length = 376 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 140/390 (35%), Positives = 191/390 (48%), Gaps = 24/390 (6%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAG 70 + + + +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G CC Sbjct: 3 ETPQRTRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 61 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 +D DARR D I + YV+D +RFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 62 EDSRDARRAADVIGIPFYVWDLADRFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALL 121 Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 LG D + TGHY + L R + R D+ +DQSY L +QL F Sbjct: 122 DKALALGFDAVCTGHYAQVILR----EDGVRELHRASDMAKDQSYVLGVLDDRQLAHAMF 177 Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 PLGD K+ +R A GL +A K DS DICF+ G + EGDIV Sbjct: 178 PLGDTVTTKDEIRAEAERRGLAVAKKPDSHDICFIADGNTQGFLADRLGKA--EGDIVDE 235 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 G LG H G YTIGQR+GL + G+P +V+ + ++ V VGP E+L+V + Sbjct: 236 AGNRLGTHEGAYGYTIGQRKGLRIGTPAPDGKPRYVLDISPVNNTVTVGPAEALDVDALR 295 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 + W G A ++R+ V + D + V F + GVA GQA Sbjct: 296 AIKPRWCG-----AAPTGPGTYTAQLRAHGGETEVRAELVDGTLEVTFSEPVRGVAPGQA 350 Query: 365 CVFYTSDSNEARVLGGGIISGSKRSDAVEE 394 V Y RV+G I+ + R+ A Sbjct: 351 IVLYDG----TRVVGSATIASTTRATAGAA 376 >gi|241557997|ref|XP_002400368.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ixodes scapularis] gi|215501775|gb|EEC11269.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ixodes scapularis] Length = 384 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 116/380 (30%), Positives = 180/380 (47%), Gaps = 20/380 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +VV MSGGVDSSV A LL++ GYDV GV ++ ++ A C D DA+ VCD Sbjct: 7 KVVCGMSGGVDSSVAAFLLRKSGYDVTGVFMRNWDPHDADSH---CDLDADETDAKWVCD 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140 T+ + D+ + + + V P Y G TP P + CNR +KF ++ GAD Sbjct: 64 TLGIPFMTVDFVKPYWHNVFSPMLQEYQDGLTPNPDIMCNRVIKFGAFHRHAVKRFGADA 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R + + +D +DQS+FL Q L FPLG+ K V Sbjct: 124 VATGHYARIRNLPD----GSVELLQGVDPVKDQSFFLSQVGQAALQRTLFPLGEATKGQV 179 Query: 201 RDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258 + LAR +GL +ADK +S +CF+ + + V++ G V + G+++G H+G Sbjct: 180 KALARSLGLHRVADKKESMGMCFIGKQDFQSFVEKYVE--PKRGTFVDIETGKVVGSHSG 237 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDGL 315 + +T+GQR LG + FV L + +++V +L + +W+ L Sbjct: 238 VHAWTLGQRCRLG-GLRSAYFVARLCPITQQILVASGWDHPALRWREMRTGAPHWIRLPL 296 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 +C K + PVP V + D G+ V + + ++ GQ VFY D Sbjct: 297 VGGGGPPLARCLFKSQHLDPPVPCTVAEGPDGGLAVLLDHHKRAISPGQFAVFYGED--- 353 Query: 375 ARVLGGGIISGSKRSDAVEE 394 ++ G I+ S E+ Sbjct: 354 SQCFGSAKITELGPSLYEEQ 373 >gi|33861847|ref|NP_893408.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|81572901|sp|Q7TTQ1|MNMA_PROMP RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|33640215|emb|CAE19750.1| tRNA methyl transferase [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 390 Score = 379 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 140/384 (36%), Positives = 213/384 (55%), Gaps = 32/384 (8%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 +K+ K +++V +SGGVDSS+ AALL DG+ V G+TL L K +GSCC+ + + Sbjct: 18 NKSKKQQKIIVGLSGGVDSSLSAALLIEDGWKVEGLTLWLM------KGEGSCCS-EGLV 70 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-T 133 DA +C+ + ++H + D F V+ Y +G TPLPC CN+ VKF ++L+ Sbjct: 71 DAAGLCEDLGINHNILDSRVIFEREVVKKTTEGYESGFTPLPCSMCNKNVKFEEMLNFVI 130 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRR-------RIMCRPMDLERDQSYFLFATTQQQLC 186 +Q +ATGHY R + ++ K ++ R D +DQSYFL++ +Q+ L Sbjct: 131 KQKEFTYIATGHYARVQKVSCENIKNYENFQFKDFLLLRGADRNKDQSYFLYSLSQEVLS 190 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDI 245 L PLG++KKE R A +GL A K +SQD+C V+ Y + K I+ I EG+I Sbjct: 191 RLILPLGNLKKEETRKEALRLGLRTAKKPESQDLCLVEH--YGSMQKFIDNHIEPKEGEI 248 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 H+NG+ILG HNGI ++TIGQR+GLG+A EPL+V LDK + V V ++ L + Sbjct: 249 KHINGEILGTHNGIQHFTIGQRKGLGIAWPEPLYVESLDKQKNIVYVANKKDLFKREAII 308 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD------GVYVDFEKSEVGV 359 +EINW+ +A + + +IR +PV + + + FE ++ + Sbjct: 309 KEINWVSI----EAPLKEIEVEAQIRYRSEPVKGILVPVKNEDNLTKKFKLIFEDNQSSI 364 Query: 360 ASGQACVFYTSDSNEARVLGGGII 383 GQA VFY + +LGGG+I Sbjct: 365 TPGQAAVFYKDEI----LLGGGLI 384 >gi|237711510|ref|ZP_04541991.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 9_1_42FAA] gi|237726033|ref|ZP_04556514.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides sp. D4] gi|265752935|ref|ZP_06088504.1| tRNA methyl transferase [Bacteroides sp. 3_1_33FAA] gi|229435841|gb|EEO45918.1| tRNA-specific 2-thiouridylase mnmA 2 [Bacteroides dorei 5_1_36/D4] gi|229454205|gb|EEO59926.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 9_1_42FAA] gi|263236121|gb|EEZ21616.1| tRNA methyl transferase [Bacteroides sp. 3_1_33FAA] Length = 351 Score = 379 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 120/372 (32%), Positives = 184/372 (49%), Gaps = 24/372 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + + + +V++ MSGG DSSV A LL+ GY+V G+T + Y ++ + Sbjct: 1 MKEAEPNNKVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFYEKGNDTEY---------L 51 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DAR +C+ + + H +D FR +I F + Y AG TP+PC CN +K+ L ++ Sbjct: 52 EDARTLCERLGIPHLTYDVRGTFRKTIIDYFINEYMAGHTPVPCTLCNNYLKWPLLKRIS 111 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 ++G ATGHY+R RL G + D ++DQS+FL+ Q+ L + P+G Sbjct: 112 DEMGIYHFATGHYVRRRLING-----YYHITTGADPDKDQSFFLWGLPQEILQRMLLPMG 166 Query: 194 DMKKESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 ++ K VR++A E G L A K DS +CF + K + G L G G Sbjct: 167 NLTKARVREIAAERGFLKAAHKRDSLGVCFCPMDYRTFLHKELPEGSILPGKFFDEMGNF 226 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 + RH G YTIGQRRGLG+ + +FV + ++VI+ ++LE + L+E Sbjct: 227 IARHKGYPFYTIGQRRGLGIDLNRAVFVKEIIPAENKVILSDLKALEKTEMRLKEWRITN 286 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSD 371 L +++ VKIR + V D+ ++V + +A GQA FY D Sbjct: 287 PAL----LLNKDDIIVKIRYRKQANRCTVTLQPDNTLHVQLHEPLTAIAPGQAAAFYRDD 342 Query: 372 SNEARVLGGGII 383 VLGGGII Sbjct: 343 V----VLGGGII 350 >gi|26554279|ref|NP_758213.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase [Mycoplasma penetrans HF-2] gi|30173413|sp|Q8CXQ3|MNMA_MYCPE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|26454288|dbj|BAC44617.1| tRNA-(5-methylaminomethyl-2-thiouridylate) methyltransferase [Mycoplasma penetrans HF-2] Length = 370 Score = 379 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 117/380 (30%), Positives = 182/380 (47%), Gaps = 32/380 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--------SRKASKRKGSCCAGQD 72 +V+V +SGGVDSSV A LLK GYDV+GV +Q ++ + + +C A D Sbjct: 2 KKVIVGISGGVDSSVSAYLLKLRGYDVMGVFMQNWDPYINKESNNDAIKSKLDTCEAEYD 61 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 A +VC + + ++ + + + V PF Y G TP P + CN+ +KF Sbjct: 62 YQIASKVCQRLGIKLERINFIKEYWDMVFEPFLDEYKKGLTPNPDILCNKYIKFGAFHKY 121 Query: 133 TRQ-LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + D +ATGHY R ++ + D+E+DQ+YFL + Q QL FP Sbjct: 122 CFENFDCDYIATGHYADVRFNQANN---IYELLEAKDIEKDQTYFLCSLNQSQLSKSIFP 178 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-G 250 L D+ K+ VR++A ++GLD DK DS ICF+ + + + + G I+ ++ Sbjct: 179 LADLTKKEVREIANKIGLDNWDKKDSTGICFIGERNFKNFLHNYIDK--KPGKIIDIDTS 236 Query: 251 QILGRHNGIINYTIGQRRGLGVAMG-EPLFVVYLDKNSSRVIVGPRES----LEVHRIYL 305 + +G H GI YTIGQR+GL + FV D +++ + V ES L Sbjct: 237 KEVGTHEGIHFYTIGQRKGLNLGGNSSRYFVCKKDISNNILYVTSNESKLKNLSSVVATC 296 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQA 364 NW+G V + K ++IR S++ + + D V +F+ EV ++ GQ Sbjct: 297 SYFNWIG------YVPNNNKVEIRIRHSKNKINGHFKILKDNVVQFEFDSPEV-ISPGQY 349 Query: 365 CVFYTSDSNEARVLGGGIIS 384 V Y + LGGG I Sbjct: 350 IVAYQ----KGVCLGGGPIK 365 >gi|319441115|ref|ZP_07990271.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium variabile DSM 44702] Length = 364 Score = 379 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 134/379 (35%), Positives = 196/379 (51%), Gaps = 21/379 (5%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRVCDTINV 85 MSGGVDSSV AA +G++VIGV L L S +A CC+ +D DARRVCD++ + Sbjct: 1 MSGGVDSSVAAARALAEGHEVIGVHLALSQSPEAVRAGSRGCCSLEDSADARRVCDSLGI 60 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145 YV+D+ +RF+ VI F SY GETP PC+ CN +KF LL + LG D + TGH Sbjct: 61 PFYVWDFSDRFKADVIDNFVESYEIGETPNPCLRCNEKIKFEALLDRSIALGFDAVVTGH 120 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y + V + R +D +DQSY L T +QL FP+GD K ++R A+ Sbjct: 121 YAQLHDGV---------LRRGIDDNKDQSYVLGVLTDEQLAHCMFPVGDTVKPAIRAEAK 171 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 ++G+ +A K DS DICF+ G+ + G + + G+ L H+G+ +TIG Sbjct: 172 DLGMGVASKPDSHDICFIPDGRTQAFLG--TKIGMRPGIVQSVEGETLAEHDGVYGFTIG 229 Query: 266 QRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 QR+GLG+ A G+P +V ++ ++ V VG + L + I + L Sbjct: 230 QRKGLGLPGPAADGQPRYVTDINASTGTVTVGRKRDLRIGHITADRL----KRLDPAKHG 285 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + +C V++R+ VP D V ++ + GVA GQA V Y D+ ++G G Sbjct: 286 ETLECEVQVRAHGGVVPATATLTSDAVELELHEPLQGVARGQAAVVYLPDAEGDILIGSG 345 Query: 382 IISGSKRS-DAVEESLLSV 399 IS + D VE S Sbjct: 346 TISATAPWVDDVESGAQSA 364 >gi|111023428|ref|YP_706400.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodococcus jostii RHA1] gi|122955129|sp|Q0S2J4|MNMA_RHOSR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|110822958|gb|ABG98242.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodococcus jostii RHA1] Length = 364 Score = 379 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 142/373 (38%), Positives = 200/373 (53%), Gaps = 23/373 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV+GV L L ++ + R GS CC+ +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVAAGHDVVGVHLAL-SAEPGTLRTGSRGCCSKEDAGDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ +RF+ VI F +SYAAGETP PC+ CN +KF+ L LG Sbjct: 60 AADVLGIPFYVWDFADRFKEDVIDDFVASYAAGETPNPCLRCNEKIKFAALADRAIALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY + V + R +D ++DQSY L T +QL FP+GD K+ Sbjct: 120 DAVATGHYAQLENGV---------LRRAVDADKDQSYVLGVLTAEQLSRAMFPVGDTPKD 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHN 257 +R+ A E GL +A+K DS DICF+ G + G +V + G++L H Sbjct: 171 RIREEAAERGLAVANKPDSHDICFIPSGDTRAFLGARIG--VRPGSVVDADSGEVLAEHE 228 Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+ +TIGQR+GLGV A G+P +V ++ ++ V VG +LEV I W Sbjct: 229 GVHGFTIGQRKGLGVQGPAADGQPRYVTSIEPDTGTVRVGSARNLEVDAITADRAVWTSG 288 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 V +C V++R+ + D G+ + + GVA GQA V Y +D Sbjct: 289 S----TPVGPVECTVQVRAHGGLAEAVAEAVDGGIAISLREPLTGVAKGQAVVLYRTDPA 344 Query: 374 EARVLGGGIISGS 386 VLG G ISG+ Sbjct: 345 GDIVLGSGTISGT 357 >gi|157413852|ref|YP_001484718.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str. MIT 9215] gi|205816917|sp|A8G6A1|MNMA_PROM2 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|157388427|gb|ABV51132.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus str. MIT 9215] Length = 385 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 133/376 (35%), Positives = 204/376 (54%), Gaps = 32/376 (8%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++V +SGGVDSS+ AALL G++V G+TL L K +GSCC+ + + DA +C+ Sbjct: 26 IIVGLSGGVDSSLSAALLVEKGWNVEGLTLWLM------KGQGSCCS-EGLVDAAGLCED 78 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVL 141 + ++H + D E F VI SY G TPLPC CN+ VKF ++L+ + + Sbjct: 79 LGINHKIIDSREIFEKEVIKKTTESYEKGLTPLPCSMCNKNVKFEEMLNYAINKKDFTHI 138 Query: 142 ATGHYIRSRLYVGDDG-------KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 ATGHY R + + + ++ R D +DQSYFL++ +Q+ L L FPLG+ Sbjct: 139 ATGHYARIKKSSYVEKLDCKSFVFKEFLLLRGADENKDQSYFLYSLSQEVLSRLEFPLGE 198 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQIL 253 MKKE R A +GL A K +SQD+C V+ Y + + I+ I EG+I+H+NG++L Sbjct: 199 MKKEETRKEALRLGLRTAQKPESQDLCLVEH--YGSMQRFIDKHIEPKEGEIMHVNGKVL 256 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G HNGI ++T+GQR+GLG+A +PL+V LD+ + V V + L + ++NW+ Sbjct: 257 GTHNGIQHFTVGQRKGLGIAWPKPLYVKSLDRGKNIVYVADKSDLFNKEAIISKVNWVSI 316 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD------GVYVDFEKSEVGVASGQACVF 367 + +IR PV + + + FE+++ + GQA VF Sbjct: 317 V----EPKQEIEVEAQIRYRSHPVKGTLIPLKNLDNPTKNFKLIFEENQSSITPGQAAVF 372 Query: 368 YTSDSNEARVLGGGII 383 Y D +LGGG+I Sbjct: 373 YKGDI----LLGGGLI 384 >gi|123969022|ref|YP_001009880.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str. AS9601] gi|205816921|sp|A2BSL2|MNMA_PROMS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|123199132|gb|ABM70773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus str. AS9601] Length = 385 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 137/377 (36%), Positives = 205/377 (54%), Gaps = 32/377 (8%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 ++V +SGGVDSS+ AALL G++V G+TL L K +GSCC+ + + DA +C+ Sbjct: 26 IIVGLSGGVDSSLSAALLVERGWNVEGLTLWLM------KGQGSCCS-EGLVDAAGLCED 78 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADVL 141 + ++H + D E F VI SY G TPLPC CN+ VKF ++L+ + + Sbjct: 79 LGINHKIIDSREIFEREVIKKTTESYEKGFTPLPCSMCNKNVKFEEMLNYAISKKDFTHI 138 Query: 142 ATGHYIRSRLYVGDDG-------KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 ATGHY R + ++ R D +DQSYFL++ +Q+ L L FPLG+ Sbjct: 139 ATGHYARINKSSYATTLDCKNLVFKEFLLLRGADENKDQSYFLYSLSQEVLSRLEFPLGE 198 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDIVHLNGQIL 253 MKKE R A +GL A K +SQD+C V+ Y + I+ I EG+IVH+NG++L Sbjct: 199 MKKEDTRREALRLGLRTAQKPESQDLCLVEH--YGSMQIFIDKHIEPKEGEIVHVNGKVL 256 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+HNGI ++T+GQR+GLG+A EPL+V LD+ + V V + L + ++NW+ Sbjct: 257 GKHNGIQHFTVGQRKGLGIAWPEPLYVKSLDRLKNIVYVADKSDLFNKEAIISKVNWVSI 316 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD------GVYVDFEKSEVGVASGQACVF 367 + + +IR +PV + + + FE+S+ V GQA VF Sbjct: 317 ----EEPEQEIEVQAQIRYRSNPVKGTLIPLKNLDNTTTTFKLIFEESQSSVTPGQAAVF 372 Query: 368 YTSDSNEARVLGGGIIS 384 Y + +LGGG+IS Sbjct: 373 YKGEI----LLGGGLIS 385 >gi|328947275|ref|YP_004364612.1| tRNA-specific 2-thiouridylase mnmA [Treponema succinifaciens DSM 2489] gi|328447599|gb|AEB13315.1| tRNA-specific 2-thiouridylase mnmA [Treponema succinifaciens DSM 2489] Length = 406 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 137/416 (32%), Positives = 202/416 (48%), Gaps = 46/416 (11%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS-----RKAS 61 + +L+ K RVVV +SGGVDS++ A LLK G DV VT+ L+ Sbjct: 4 NSMTYEELELPKKGDRVVVGLSGGVDSTMTAMLLKEKGCDVTCVTMSLWQEADLNLPDDY 63 Query: 62 KRKGSCCAGQDVYDA---RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCV 118 K SC + ++V D R+ C + + V D +E+++ VI F Y G TP PC+ Sbjct: 64 KIPDSCYSPKEVEDIEENRKFCAEQGIPYVVVDVKEKYQQEVIEYFKREYRNGRTPNPCI 123 Query: 119 DCNRTVKFSDLLSVTRQLGA--DVLATGHYIRSR-------LYVGDDGK-------RRRI 162 CNR +KF +LS + LG D TGHY ++ L G++ R Sbjct: 124 RCNRFIKFGAMLSGLKDLGIEYDYFCTGHYAKAVRGTEPLFLVYGENASKDERGKCRPVQ 183 Query: 163 MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICF 222 + +D+ +DQ+YFL+ L +RFPL K+ + +ARE GL A+K +SQD Sbjct: 184 IHTALDITKDQAYFLYRIPSAILEKVRFPLASFSKKEIFKMARERGLKAAEKEESQDFIP 243 Query: 223 VQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVY 282 +Y ++ GD + L+G++LGRH GI +YTIGQRRGLGV+ PL+V Sbjct: 244 APMLEYM-----FKDKPSVPGDFIDLDGKVLGRHKGIEHYTIGQRRGLGVSAPYPLYVAE 298 Query: 283 LDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV- 341 +DK + V++G L + ++ W D F VKIR + PV V Sbjct: 299 IDKEKNLVVLGKDSDLFCSGLIADDLVWPADYD----PCCEFDAMVKIRLASKPVKAHVV 354 Query: 342 --QRNDDG------VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389 Q ++ V F++ + VA GQ+ VFY LGGGIIS + ++ Sbjct: 355 PYQPLENEEFCGKSYKVVFDEPQRAVAPGQSIVFYKDGIT----LGGGIISKAIKA 406 >gi|294055153|ref|YP_003548811.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Coraliomargarita akajimensis DSM 45221] gi|293614486|gb|ADE54641.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Coraliomargarita akajimensis DSM 45221] Length = 356 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 112/366 (30%), Positives = 179/366 (48%), Gaps = 17/366 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+VA+SGGVDS+V A LLK GY V G ++ + + +A C A QD+ D+R V Sbjct: 2 QKVLVALSGGVDSAVAALLLKEQGYAVSGAYIRTWMNEEAP--LADCPAQQDIEDSRAVA 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + + + + V+ Y G TP P + CNR +KF + G D Sbjct: 60 QHLGIDYEIVNLVNEYSEHVVNYLVDGYKRGITPNPDMMCNREMKFGIFQNYALSQGFDA 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + +DG + +D +DQ+YFL Q+Q+ FP+G+++K V Sbjct: 120 MATGHYVRK--FKNEDGS--FNLLEGIDKNKDQTYFLALLKQEQIAKALFPVGELQKPRV 175 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R+LA E L A K DSQ ICF+ ++ G+IV+ G++LG+H G+ Sbjct: 176 RELAIEHQLPNAAKKDSQGICFLGDMNINRFLEHYIED--RPGNIVNPEGKVLGQHRGLH 233 Query: 261 NYTIGQRRGLGVAM---GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 YT+GQRRG+GV E VV + + +IV ++ + ++ +E+ G Sbjct: 234 RYTMGQRRGIGVPSNTDNEFYVVVGFNMEQNELIVA-FDNPDSPGLFTQEVEVYGLSFVN 292 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 V + + K R + D V F++ + +ASGQ Y ++ Sbjct: 293 KPVTEACRLLAKPRYRDSSQAITYTPTGPDSAKVVFDEPQRALASGQILALYEGET---- 348 Query: 377 VLGGGI 382 +LGGG Sbjct: 349 LLGGGF 354 >gi|54026238|ref|YP_120480.1| tRNA-specific 2-thiouridylase MnmA [Nocardia farcinica IFM 10152] gi|81602523|sp|Q5YRS5|MNMA_NOCFA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|54017746|dbj|BAD59116.1| putative tRNA methyl transferase [Nocardia farcinica IFM 10152] Length = 372 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 146/378 (38%), Positives = 200/378 (52%), Gaps = 22/378 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV+GV L L ++ + R GS CC+ +D DARR Sbjct: 2 MRVLAAMSGGVDSAVAAARAVDAGHDVVGVHLAL-SATPGTLRTGSRGCCSKEDAGDARR 60 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ +RF+ VI F ++YAAGETP PC+ CN +KFS L LG Sbjct: 61 AADVLGIPFYVWDFADRFKEDVIDDFVAAYAAGETPNPCLRCNEKIKFSALADRAVALGF 120 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGHY R V + R +D ++DQSY L T +QL FP+GD K Sbjct: 121 DAVVTGHYARLSDGV---------LRRAVDADKDQSYVLAVLTAEQLARAMFPVGDTPKP 171 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R A E GL +A+K DS DICF+ G + G +V +GQ+L H G Sbjct: 172 QIRAEAAERGLAVANKPDSHDICFIPSGDTRAFLGARIG--IRPGAVVDADGQVLAEHEG 229 Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 + +TIGQR+GLG+ A G+P +V +D S V VG E L+V ++ W Sbjct: 230 VHGFTIGQRKGLGLPGPAADGKPRYVTDIDPASGTVRVGSAEDLQVRQVRAERAVWTSGR 289 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 E + C ++R+ P + D G+ V + GVA GQA V Y D Sbjct: 290 TPEGPI----DCVAQVRAHGGTAPATAEAVDGGLVVRLHEPLTGVAKGQAVVLYRPDPLG 345 Query: 375 ARVLGGGIISGSKRSDAV 392 VLG G ISG+ R+ A+ Sbjct: 346 DEVLGSGTISGTARTHAL 363 >gi|154250437|ref|YP_001411262.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fervidobacterium nodosum Rt17-B1] gi|205816865|sp|A7HNX2|MNMA_FERNB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|154154373|gb|ABS61605.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fervidobacterium nodosum Rt17-B1] Length = 348 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 119/366 (32%), Positives = 185/366 (50%), Gaps = 24/366 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK---GSCCAGQDVYDARR 78 +V V +SGGVDS+V LL GY+V ++ ++ CC+ D +DA+ Sbjct: 4 KVGVLLSGGVDSAVALYLLIEKGYEVTAYHMKTVRDELYITKQIKHKVCCSPSDTHDAQL 63 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + V + E+ F+ +I F S AG+TP PC CN +KF ++ V G Sbjct: 64 IAKKFGVPFKIIHVEDVFKEKIIDYFISENLAGKTPNPCFFCNDYIKFGFVMDVALSDGM 123 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +A+GHY R +GK + R +D E+DQSYFL + +++L + P G+ KE Sbjct: 124 DFVASGHYARIL-----NGK----LYRALDKEKDQSYFLASIKKEKLSKILLPNGEYSKE 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 ++RD+A G+ +A K DSQD+CF+ + + I G+I+ G+I+G+H G Sbjct: 175 TIRDIAERAGIHVAKKIDSQDLCFLPDNDFKSFFEERGVKIE-PGNIITSEGKIIGKHEG 233 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 + YTIGQR+ LGVA G+ L+V + + ++V P + + + + ++ +N D Sbjct: 234 LPFYTIGQRK-LGVAAGQKLYVKAKNVEGNFIVVSPLDEVYQNEMRVKNLNIYVD----- 287 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + D F VKIR VP V+ D + V F + V GQ VFY D VL Sbjct: 288 -LPDEFLATVKIRKKFKEVPCRVEYLKDELKVQFLEPVFAVTPGQIAVFYNED----EVL 342 Query: 379 GGGIIS 384 G+I Sbjct: 343 CSGVIE 348 >gi|295836383|ref|ZP_06823316.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces sp. SPB74] gi|295825995|gb|EDY45586.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces sp. SPB74] Length = 385 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 137/386 (35%), Positives = 191/386 (49%), Gaps = 24/386 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQD 72 + + ++V+ AMSGGVDS+V AA G+DV GV L L ++ S R G CC +D Sbjct: 6 PRPLRPLKVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIED 64 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DARR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 65 SRDARRAADVIGIPFYVWDLAERFREDVVDDFVAEYEAGRTPNPCLRCNEKIKFAALLDK 124 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 LG D + TGHY R + R + R D+ +DQSY L +QL FPL Sbjct: 125 ALALGFDAVCTGHYARVLIRPD----GSRELHRASDMAKDQSYVLGVLDDRQLAHAMFPL 180 Query: 193 GD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250 GD K+ +R A GL +A K DS DICF+ G + EGDIV +G Sbjct: 181 GDTETTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGTA--EGDIVDEDG 238 Query: 251 QILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 LG H G +TIGQR+GL + G+P +V+ + + V VGPR SL+V + Sbjct: 239 TRLGTHQGAYGFTIGQRKGLRIGHPAADGKPRYVLDISPVDNTVTVGPRASLDVASLTAV 298 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 W G A + + ++R+ V + + V+F+ GVA GQA V Sbjct: 299 RPRWCG-----TAPLTAGRYTAQLRAHGGESDVRAELAGGELRVEFDAPVRGVAPGQAVV 353 Query: 367 FYTSDSNEARVLGGGIISGSKRSDAV 392 Y RV+G I+ +++ + Sbjct: 354 LYDG----TRVVGSATIATTRKPEPA 375 >gi|237724458|ref|ZP_04554939.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides sp. D4] gi|229437327|gb|EEO47404.1| tRNA-specific 2-thiouridylase mnmA 3 [Bacteroides dorei 5_1_36/D4] Length = 364 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 112/369 (30%), Positives = 180/369 (48%), Gaps = 26/369 (7%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGG+DSS +L+ GY+V+GVT++ ++ G DV +A+ + + + + Sbjct: 1 MSGGIDSSATCIMLQEQGYEVVGVTMRTWDIPSRFSTPGQ-DEPDDVLEAKALAERLGIE 59 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 H+V D + F+ ++ F Y G TP PCV CN K L Q ++TGHY Sbjct: 60 HHVADVRKEFKQIIVKHFIDEYMQGRTPNPCVLCNPLFKERILCEWADQTNCAHISTGHY 119 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 R ++ K + + D +DQSYFL+ Q+ L FPLG K+ VR+ R+ Sbjct: 120 CRL-----EERKGKLYIVAGDDQTKDQSYFLWKLPQEILQRFLFPLGTYTKQEVREYLRQ 174 Query: 207 MGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQILGRHNGIINY 262 G + A +S +ICF++ G Y + ++ I G V+ G +G+H G Y Sbjct: 175 KGFEAKARGGESMEICFIE-GDYRNFLRSQCPDIDTQVGPGWFVNSKGVKIGQHKGFPYY 233 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GL +A+G P +V+ ++ + V++G E L+ + + + + + D Sbjct: 234 TIGQRKGLEIALGHPAYVLRINAEKNTVMLGDAEELKAEYMLVEDYH-------ITEMQD 286 Query: 323 GFKCF---VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 +C V+IR P+P V D+ + V F +A GQ+ VFY RVL Sbjct: 287 LLQCKDLSVRIRYRSKPIPCQVLVLDEKQLLVRFLSEASAIAPGQSAVFYEG----KRVL 342 Query: 379 GGGIISGSK 387 GG I+ + Sbjct: 343 GGAFIASQR 351 >gi|195867812|ref|ZP_03079812.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|195660509|gb|EDX53766.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Ureaplasma urealyticum serovar 9 str. ATCC 33175] Length = 350 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 110/359 (30%), Positives = 180/359 (50%), Gaps = 31/359 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN-------SRKASKRKGSCCAGQD 72 RVV+ +SGGVDSSV A LLK+ GY+VIG+ + ++ +R++ K+ C + D Sbjct: 6 KKRVVIGLSGGVDSSVSALLLKQQGYEVIGLFMANWDTVANFENNRESDKKHQGCESELD 65 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DA+ V I + Y ++ + + N V F S Y TP P + CN+ +KF L+ Sbjct: 66 YQDAQAVAQKIGIPLYRVEFIKEYWNNVFEYFLSEYQKNRTPNPDILCNQFIKFDSFLNY 125 Query: 133 TR-QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + +L AD +A GHY + + + + D+ +DQ+YFL Q QL + FP Sbjct: 126 AKNELKADYIAMGHYAKVKH-----TNNLSYLLKATDVNKDQTYFLCNLKQTQLQNALFP 180 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250 +GD+ K+ VR +A+E GL A+K DS ICF+ + + ++ G+IV+ +N Sbjct: 181 IGDLTKQQVRTIAKEYGLVTANKKDSTGICFIGERNFKYFLENYIPN--QPGEIVNIVNN 238 Query: 251 QILGRHNGIINYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVGP----RESLEVHRIYL 305 QI+G H G + YTIGQR+GL M E +FV D N + V P + L ++ + Sbjct: 239 QIVGHHMGTMYYTIGQRKGLNLGGMNERMFVCEKDINKKIIYVSPLSLEDQYLISNQALV 298 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV---FVQRNDDGVYVDFEKSEVGVAS 361 +N++ + + V+ R Q+ V V N + V +++ + + Sbjct: 299 ENMNFIEPYNPQIPI------SVRFRHRQNLVVVNSFLCIENTNNVLINY-EPAKAITP 350 >gi|260577537|ref|ZP_05845477.1| probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium jeikeium ATCC 43734] gi|258604341|gb|EEW17578.1| probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium jeikeium ATCC 43734] Length = 389 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 132/383 (34%), Positives = 189/383 (49%), Gaps = 38/383 (9%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRVCDTINV 85 MSGGVDS+V A+ G++VIGV L L S +A CC+ +D DARRV D + + Sbjct: 1 MSGGVDSAVAASRALEAGHEVIGVHLALSQSPEAVRAGSRGCCSLEDSADARRVADKLGI 60 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145 YV+D+ +RF+ VI F SYA GETP PC+ CN +KF LL + LG D + TGH Sbjct: 61 PFYVWDFSDRFKADVIDDFVDSYAIGETPNPCLRCNEKIKFEALLDRSIALGFDAVVTGH 120 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y R V M R +D +DQSY L T +QL FP+GD K +R+ A+ Sbjct: 121 YARLHDGV---------MRRGVDANKDQSYVLGVLTDEQLAHCMFPVGDTIKPEIREEAK 171 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 + G +A K DS DICF+ G+ + + G + +G + H+G+ +TIG Sbjct: 172 DHGFGVASKPDSHDICFIPDGQTQAFLGKKIGL--RPGLMKDQDGSTVAEHDGVYGFTIG 229 Query: 266 QRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 QR+GLG+ G+P +V +D + V +G R+ L V I + L + Sbjct: 230 QRKGLGLPREGLDGKPRYVTDIDAATGTVTIGQRDDLRVGGITADRLKRLDPAVH----G 285 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDD------------------GVYVDFEKSEVGVASGQ 363 F+C V++R+ VP + DD + +D + GVA GQ Sbjct: 286 REFECEVQVRAHGGVVPATARLVDDPERTTPAGRVKKEGESPWRLELDLHEPLQGVARGQ 345 Query: 364 ACVFYTSDSNEARVLGGGIISGS 386 A V Y D+ +LG G I + Sbjct: 346 AAVVYQPDAEGDILLGSGTIRAT 368 >gi|205822051|sp|A4FMT5|MNMA_SACEN RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 362 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 136/374 (36%), Positives = 191/374 (51%), Gaps = 19/374 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G++V+GV L L +++ + R G CC +D +DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVEAGHEVVGVHLAL-SAKPGTLRTGARGCCTIEDSHDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ ERF VI F YAAG TP PC+ CN +KF LL LG Sbjct: 60 AADILGIPFYVWDFAERFTEEVIETFVGEYAAGRTPNPCLTCNEKIKFEALLEKAMALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGHY R + G ++ R D +DQSY L + T +QL FPLGD K Sbjct: 120 DAVCTGHYARLTVEDG-----VPVLRRSRDEGKDQSYVLASLTAEQLGHSMFPLGDSLKS 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHN 257 VR A E GL +A K DS DICF+ G ++ G +V G +LG H Sbjct: 175 QVRQEAAERGLAVAKKPDSHDICFIPDGDTKKFLESKLGQ--KPGQLVDAETGAVLGEHT 232 Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+ +T+GQR+GLG+ G P +V+ L+ S V VG + L V I + W Sbjct: 233 GVHGFTVGQRKGLGIDAPAPDGRPRYVLSLEPVSGTVKVGSADHLGVTEIDAKRPIW--- 289 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + + +C V++R+ + D G+ + + GVA GQA V Y + Sbjct: 290 -PSQRELDGPTECVVQVRAHGGTADAVAEVADGGMSIRLRRPLRGVAPGQAVVLYRPEEE 348 Query: 374 EARVLGGGIISGSK 387 VLG +I+ ++ Sbjct: 349 GDLVLGSALIAATR 362 >gi|320168110|gb|EFW45009.1| tRNA methyl transferase [Capsaspora owczarzaki ATCC 30864] Length = 647 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 120/440 (27%), Positives = 180/440 (40%), Gaps = 71/440 (16%) Query: 8 RLNSLDLDKNPK----------DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS 57 RL+S DL++ P+ RV V +SGGVDS+V A LLKR G DVIGV ++ ++ Sbjct: 189 RLDSRDLEQIPRSHPTWPAGAPPPRVAVGVSGGVDSTVAAYLLKRQGLDVIGVYMKNWDE 248 Query: 58 RKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117 + G C QD+ DA C + + ++ + + N V F Y G TP P Sbjct: 249 LDET---GHCTGEQDMRDAALSCAALGIPFRTVNFVKEYWNDVFTVFLQEYQRGRTPNPD 305 Query: 118 VDCNRTVKFSDLLSVTR-QLGADVLATGHYIRSRLYVGDDG-KRRRIMCRPMDLERDQSY 175 + CNR +KF LL+V + GA LATGHY G + D +DQ+Y Sbjct: 306 ILCNREIKFKALLNVVQTSFGAQFLATGHYAGVNRSAFASGLSPHPQLIEAHDKAKDQTY 365 Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKR 234 FL A + + L FPL ++K V+ +A E+GL +++ K +S ICFV + ++ + Sbjct: 366 FLAAISSEALSRTLFPLYGLEKHQVKRIAHEIGLIELSTKKESVGICFVGKRRFDRFISN 425 Query: 235 INAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP 294 G I +G I+G+H G YT+GQ RGL + VV D + VIV Sbjct: 426 YI--APQPGYIELTDGTIVGQHQGHFLYTVGQHRGLPGGADQ-FCVVAKDSARNAVIVTK 482 Query: 295 RES-------------------------------------LEVHRIYLREINWLGDGLF- 316 + + I + +W+ Sbjct: 483 ASAISRAYKIFGDTVNKSGTTAVPAKLVDASNLAEPDPSCMYSRSIVVSAPSWIAGVPPL 542 Query: 317 --EDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--------GVYVDFEKSEVGVASGQACV 366 + +C + R VP V D +++ ++ VA GQ Sbjct: 543 ELQGGQGQQLRCGARFRHRAPIVPCTVTLQSDESGQASPVKLHIQLDRPFAAVAPGQFAA 602 Query: 367 FYTSDSNEARVLGGGIISGS 386 Y LGGG I + Sbjct: 603 LYLD----GVCLGGGDIVET 618 >gi|15643286|ref|NP_228330.1| tRNA-specific 2-thiouridylase MnmA [Thermotoga maritima MSB8] gi|8134745|sp|Q9WYZ0|MNMA_THEMA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|4981033|gb|AAD35605.1|AE001728_6 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermotoga maritima MSB8] Length = 358 Score = 377 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 123/372 (33%), Positives = 183/372 (49%), Gaps = 18/372 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS---CCAGQDVYDAR 77 M+V VA+SGGVDS+V LL ++G++V ++ K++ CC+ D DA Sbjct: 1 MKVGVALSGGVDSAVALYLLLKEGHEVKAFHMKTKEDEFFIKKEIKKKVCCSPSDTADAM 60 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 R+ + V + D +E FR VI PF G TP PC CNR VKF L+ G Sbjct: 61 RIAHFLGVEIEIVDVKEIFREKVIEPFKRDLLKGLTPNPCAHCNRFVKFGYLMDYVLNQG 120 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D A+GHY R + R+++ + +DL++DQSYFL ++ L FP G K Sbjct: 121 FDAFASGHYARIEFS---EKYGRKVIKKGVDLKKDQSYFLARIEPWRIERLIFPNGIYTK 177 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 E +R +A E G+ +A K +SQD+CF+ G + +K +GDI+ G+++GRH Sbjct: 178 EEIRKIAEEAGIHVAKKQESQDVCFIPDGSIENFLKD-EGITLKDGDIITPEGEVVGRHF 236 Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G YTIGQR+G + G +V + V+V E + + + W + Sbjct: 237 GYPLYTIGQRKGFKIEKFGRRYYVRGKIPEKNVVVVSDLEDVFFSGLIAEDPVWHVE--- 293 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 V + F+C ++R + P V+ D+ V V FEK V GQ FY D+ Sbjct: 294 ---VPEEFRCVCRVRKKSEEAPAVVKVKDNEVEVSFEKKVFAVTPGQIAAFYDGDT---- 346 Query: 377 VLGGGIISGSKR 388 +LGG II R Sbjct: 347 LLGGAIIKEGIR 358 >gi|320168295|gb|EFW45194.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Capsaspora owczarzaki ATCC 30864] Length = 554 Score = 377 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 120/440 (27%), Positives = 179/440 (40%), Gaps = 71/440 (16%) Query: 8 RLNSLDLDKNPK----------DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS 57 RL+S DL+ P+ RV V +SGGVDS+V A LLKR G DVIGV ++ ++ Sbjct: 96 RLDSRDLEPIPRSHPTWPAGAPPPRVAVGVSGGVDSTVAAYLLKRQGLDVIGVYMKNWDE 155 Query: 58 RKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC 117 + G C QD+ DA C + + ++ + + N V F Y G TP P Sbjct: 156 LDET---GHCTGEQDMRDAALSCAALGIPFRTVNFVKEYWNDVFTVFLQEYQRGRTPNPD 212 Query: 118 VDCNRTVKFSDLLSVTR-QLGADVLATGHYIRSRLYVGDDG-KRRRIMCRPMDLERDQSY 175 + CNR +KF LL+V + GA LATGHY G + D +DQ+Y Sbjct: 213 ILCNREIKFKALLNVVQTSFGAQFLATGHYAGVNRSAFASGLSPHPQLIEAHDKAKDQTY 272 Query: 176 FLFATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKR 234 FL A + + L FPL ++K V+ +A E+GL +++ K +S ICFV + ++ + Sbjct: 273 FLAAISSEALSRTLFPLYGLEKHQVKRIAHEIGLIELSTKKESVGICFVGKRRFDRFISN 332 Query: 235 INAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP 294 G I +G I+G+H G YT+GQ RGL + VV D + VIV Sbjct: 333 YI--APQPGYIELTDGTIVGQHQGHFLYTVGQHRGLPGGADQ-FCVVAKDSARNAVIVTK 389 Query: 295 RES-------------------------------------LEVHRIYLREINWLGDGLF- 316 + + I + +W+ Sbjct: 390 ASAISRAYKIFGDTVNKSGTTAVPAKLVDASNLAEPDPSCMYSRSIVVSAPSWIAGVPPL 449 Query: 317 --EDAVVDGFKCFVKIRSSQDPVPVFVQRNDD--------GVYVDFEKSEVGVASGQACV 366 + +C + R VP V D +++ ++ VA GQ Sbjct: 450 ELQGGQGQQLRCGARFRHRAPIVPCTVTLQSDESGQASPVKLHIQLDRPFAAVAPGQFAA 509 Query: 367 FYTSDSNEARVLGGGIISGS 386 Y LGGG I + Sbjct: 510 LYLD----GVCLGGGDIVET 525 >gi|33240814|ref|NP_875756.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|81664194|sp|Q7VAT9|MNMA_PROMA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|33238343|gb|AAQ00409.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 406 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 135/384 (35%), Positives = 197/384 (51%), Gaps = 38/384 (9%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + V +SGGVDSS+ AALL G++V G+TL L + KGSCC + DA +C+ Sbjct: 39 IAVGLSGGVDSSLTAALLVEAGWNVEGITLWLMS------GKGSCCT-DGLVDAAGICEQ 91 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVL 141 + + H+V D E F+ +I Y G TP PC CNR VKFS +L Q LG + Sbjct: 92 LGIPHHVIDARETFQREIIESLVKGYQEGMTPSPCSKCNRFVKFSPILEWAEQNLGLKRI 151 Query: 142 ATGHYIRSRL--------YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 ATGHY R + ++ RR + R +D +DQSYFL+ +Q+ L + FPLG Sbjct: 152 ATGHYARIKHLQEPIKISSAKENQIRRHQLLRGLDQNKDQSYFLYDLSQEILEKVIFPLG 211 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQI 252 ++KK R A + L A+K +SQD+C + G + G+I+ NGQ+ Sbjct: 212 ELKKADTRKEASRIELRTAEKPESQDLCLAEHHGSMKAFLDEYI--SPRNGEILLSNGQL 269 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 LG+H+GI ++TIGQR+GLG+A EPL V+ + +++RVIV PR + INW+ Sbjct: 270 LGQHDGIEHFTIGQRKGLGIAWKEPLHVIEIQSSTNRVIVAPRSEASRDNCTVGSINWVS 329 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR--------NDDGVY---VDFEKSEVGVAS 361 + V++R PV + +D Y + F+ + + Sbjct: 330 IEPPSKKTI----VEVQLRYRSKPVLATLTPIKPLKKDIENDRPYRCNLQFQSEQFSITP 385 Query: 362 GQACVFYTSDSNEARVLGGGIISG 385 GQA VFY + +LGGGII G Sbjct: 386 GQAAVFYEGEI----LLGGGIIEG 405 >gi|237709059|ref|ZP_04539540.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229456755|gb|EEO62476.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 364 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 112/369 (30%), Positives = 180/369 (48%), Gaps = 26/369 (7%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGG+DSS +L+ GY+V+GVT++ ++ G DV +A+ + + + + Sbjct: 1 MSGGIDSSATCIMLQEQGYEVVGVTMRTWDVPSRFSTPGQ-DEPDDVLEAKALAERLGIE 59 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 H+V D + F+ ++ F Y G TP PCV CN K L Q ++TGHY Sbjct: 60 HHVADVRKEFKQIIVKHFIDEYMQGRTPNPCVLCNPLFKERILCEWADQTNCAHISTGHY 119 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 R ++ K + + D +DQSYFL+ Q+ L FPLG K+ VR+ R+ Sbjct: 120 CRL-----EERKGKLYIVAGDDQTKDQSYFLWKLPQEILQRFLFPLGTYTKQEVREYLRQ 174 Query: 207 MGLDI-ADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQILGRHNGIINY 262 G + A +S +ICF++ G Y + ++ I G V+ G +G+H G Y Sbjct: 175 KGFEAKARGGESMEICFIE-GDYRNFLRSQCPDIDTQVGPGWFVNSKGVKIGQHKGFPYY 233 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GL +A+G P +V+ ++ + V++G E L+ + + + + + D Sbjct: 234 TIGQRKGLEIALGHPAYVLRINAEKNTVMLGDAEELKAEYMLVEDYH-------ITEMQD 286 Query: 323 GFKCF---VKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 +C V+IR P+P V D+ + V F +A GQ+ VFY RVL Sbjct: 287 LLQCKDLSVRIRYRSKPIPCQVLVLDEKQLLVRFLSEASAIAPGQSAVFYEG----KRVL 342 Query: 379 GGGIISGSK 387 GG I+ + Sbjct: 343 GGAFIASQR 351 >gi|212692213|ref|ZP_03300341.1| hypothetical protein BACDOR_01709 [Bacteroides dorei DSM 17855] gi|212665090|gb|EEB25662.1| hypothetical protein BACDOR_01709 [Bacteroides dorei DSM 17855] Length = 351 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 119/372 (31%), Positives = 183/372 (49%), Gaps = 24/372 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + + + +V++ MSGG DSSV A LL+ GY+V G+T + Y ++ + Sbjct: 1 MKEAEPNNKVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFYEKGNDTEY---------L 51 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DAR +C+ + + H +D FR +I F + Y AG TP+PC CN +K+ L ++ Sbjct: 52 EDARTLCERLGIPHLTYDVRGTFRKTIIDYFINEYMAGHTPVPCTLCNNYLKWPLLKRIS 111 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 ++G ATGHY+R RL G + D ++DQS+FL+ Q+ L + P+G Sbjct: 112 DEMGIYHFATGHYVRRRLING-----YYHITTGADPDKDQSFFLWGLPQEILQRMLLPMG 166 Query: 194 DMKKESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 ++ K VR++A E G L A K DS +CF + K + G L G G Sbjct: 167 NLTKARVREIAAERGFLKAAHKRDSLGVCFCPMDYRTFLHKELPEGSILPGKFFDEMGNF 226 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 + RH G YTIGQRRGL + + +FV + ++VI+ ++LE + L+E Sbjct: 227 IARHKGYPFYTIGQRRGLDIDLNRAVFVKEIIPAENKVILSDLKALEKTEMRLKEWRITN 286 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSD 371 L +++ VKIR + V D+ ++V + +A GQA FY D Sbjct: 287 PAL----LLNKDDIIVKIRYRKQANRCTVTLQPDNTLHVQLHEPLTAIAPGQAAAFYRDD 342 Query: 372 SNEARVLGGGII 383 VLGGGII Sbjct: 343 V----VLGGGII 350 >gi|319957080|ref|YP_004168343.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitratifractor salsuginis DSM 16511] gi|319419484|gb|ADV46594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nitratifractor salsuginis DSM 16511] Length = 340 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 129/367 (35%), Positives = 199/367 (54%), Gaps = 33/367 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 + +V+V MSGGVDS+V A LL+++GY+V+GV ++L+++ ++ ARRV Sbjct: 3 EKKVLVGMSGGVDSTVAALLLQKEGYEVVGVYMKLHDNEA--------YHRENYAKARRV 54 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + V + D FR V F Y G TP PCV CNR +KF +L LG + Sbjct: 55 GEYLGVEVHFLDISGDFRQEVYDYFVEEYRTGRTPNPCVVCNRQIKFGRMLEFADSLGIE 114 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY+RS DG+ + D +DQSYFL ++ + L FPLG+ KE Sbjct: 115 KVATGHYVRS------DGRYIYM---ARDRSKDQSYFLAQVRKEVIPRLLFPLGEWLKEE 165 Query: 200 VRDLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 V+ A E+ + D+A + +S +ICFV+ Y +V++R I EG++++ G+++G H Sbjct: 166 VKAYAAEIPVLQDLATQKESSEICFVE-NDYTEVLQRHME-IDREGEVLNEAGEVVGTHK 223 Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G ++YTIG+RRG V +P +V+ +D +R++VG RE LE + IN D Sbjct: 224 GYMHYTIGKRRGFTVRGAHDPHYVLSVDPERNRIVVGTREKLEERSFEISRINLFED--- 280 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + F C VK+R +P V + + V+ + G+A GQ VFY + R Sbjct: 281 ----LTEFDCQVKVRYRTRAIPAHVVIDGERGRVELGEPVYGLARGQFAVFYDGE----R 332 Query: 377 VLGGGII 383 +LGGG I Sbjct: 333 LLGGGEI 339 >gi|239944472|ref|ZP_04696409.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces roseosporus NRRL 15998] gi|239990930|ref|ZP_04711594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces roseosporus NRRL 11379] gi|291447937|ref|ZP_06587327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces roseosporus NRRL 15998] gi|291350884|gb|EFE77788.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces roseosporus NRRL 15998] Length = 378 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 142/385 (36%), Positives = 194/385 (50%), Gaps = 24/385 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDA 76 + +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G CC +D DA Sbjct: 7 RPLRVLAAMSGGVDSAVAAARAVEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDA 65 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL L Sbjct: 66 RRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALAL 125 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194 G D + TGHY L +DG R + R D+ +DQSY L ++QL FPLGD Sbjct: 126 GFDAVCTGHYATVVL--TEDGS--RELHRASDMAKDQSYVLGVLDEKQLAHAMFPLGDTL 181 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 K+ +R A GL +A K DS DICF+ G + G A EGDI+ +G LG Sbjct: 182 TTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLADRLGGPA-EGDILDESGTKLG 240 Query: 255 RHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 H G +TIGQR+GL + G+P +V+ + ++ V VGP E+L+V + + W Sbjct: 241 THEGAFGFTIGQRKGLKIGHPAPDGKPRYVLDISPVNNTVTVGPVEALDVTSLTAIKPRW 300 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYT 369 G ++R+ V + D + V F + GVA GQA V Y Sbjct: 301 CG-----TPPSGPGTYTAQLRAHGGETEVTAELVDGSELNVTFTEPVRGVAPGQAVVLYD 355 Query: 370 SDSNEARVLGGGIISGSKRSDAVEE 394 RV+G I+ + R + V Sbjct: 356 G----TRVVGSATIATTVRRERVAA 376 >gi|260171966|ref|ZP_05758378.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides sp. D2] Length = 350 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 111/366 (30%), Positives = 177/366 (48%), Gaps = 33/366 (9%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGG+DS+ +L+ GY+++GVT++++ DAR + + + Sbjct: 1 MSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARELAVRMGIE 46 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 HYV D F+ ++ F Y G TP PCV CN KF L +L +ATGHY Sbjct: 47 HYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLTEWADKLNCAWIATGHY 106 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 R ++ + D ++DQSYFL+ Q+ L FPLGD K VR+ E Sbjct: 107 SRL-----EEKNGYTYIVAGDDDKKDQSYFLWRLGQEVLKRCIFPLGDYTKVKVREYLAE 161 Query: 207 MGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILGRHNGIINY 262 G + + +S ++CF+ +G Y D ++ + G V+ G LG+H G Y Sbjct: 162 KGYEAKSKEGESMEVCFI-KGDYRDFLREQCPEMDSEIGPGWFVNSEGVKLGQHKGAPYY 220 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GL +A+G+P +V+ ++ + V++G + L + + + E + Sbjct: 221 TIGQRKGLEIALGKPAYVLKINPQKNTVMLGDADQLNTEYMLAEQ----DKIVDEQELFG 276 Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 V+IR P+P V+R +DG + V F ++ +A GQ+ VFY RVLGG Sbjct: 277 CENLTVRIRYRSRPIPCRVKRLEDGRLLVRFLETASAIAPGQSAVFYDG----RRVLGGA 332 Query: 382 IISGSK 387 I+ + Sbjct: 333 FIASQR 338 >gi|325833497|ref|ZP_08165946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eggerthella sp. HGA1] gi|325485421|gb|EGC87890.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Eggerthella sp. HGA1] Length = 352 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 131/364 (35%), Positives = 191/364 (52%), Gaps = 23/364 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+ + MSGGVDS+V AALL R GY+V+GVT + ++ + A VC Sbjct: 6 RIALGMSGGVDSAVSAALLMRAGYEVVGVTCRFRDNAATERAAADAAA---------VCS 56 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H + F V+ PF SSYAAG TP PCV CN K L+ V +LG D + Sbjct: 57 QLGIRHETPECVGEFERCVVEPFVSSYAAGLTPSPCVGCNARCKMPALVRVADELGCDRI 116 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R ++ R +D +DQSY L +Q+QL L PLG M K VR Sbjct: 117 ATGHYARIARLSD---SGRFVVKRALDARKDQSYMLSLLSQEQLARLVLPLGAMTKAEVR 173 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A ++GL +A+K++SQD CF++ G Y ++ A GDIV G +LG H G+ N Sbjct: 174 VIAADLGLVVAEKAESQDNCFIE-GDYRPFLRARGVEDA-PGDIVDRMGNVLGCHEGLAN 231 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YT+GQR+G+GVA EP +VV + ++VG + + + + ++NW +++ Sbjct: 232 YTVGQRKGIGVAGPEPYYVVEKRVETRELVVGFADETLIGSVVVGDMNWQAF----ESLG 287 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 + + VK+R P ++ DD V + + A GQ V Y D+ VLGG Sbjct: 288 ESYGAMVKLRYRSRPCACIIEPEDDQRVSLALRSPQPTTAPGQYAVLYDGDT----VLGG 343 Query: 381 GIIS 384 G+I Sbjct: 344 GMIE 347 >gi|170288218|ref|YP_001738456.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermotoga sp. RQ2] gi|205828981|sp|B1L8X5|MNMA_THESQ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|170175721|gb|ACB08773.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermotoga sp. RQ2] Length = 358 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 123/372 (33%), Positives = 185/372 (49%), Gaps = 18/372 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR---KASKRKGSCCAGQDVYDAR 77 M+V VA+SGGVDS+V LL ++G++V ++ K +K CC+ D DA Sbjct: 1 MKVGVALSGGVDSAVALYLLLKEGHEVKAFHMKTKEDEFFLKKEIKKKVCCSPSDTADAI 60 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 R+ ++ V + D E FR VI PF G TP PCV CNR VKF + G Sbjct: 61 RIARSLGVEIEIVDVREVFREKVIEPFKRDLLRGLTPNPCVHCNRYVKFGYFMDYVLSQG 120 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D A+GHY R ++++ + +D ++DQSYFL ++ L FP G K Sbjct: 121 FDAFASGHYARVEFSGK---YGKKVIKKGVDGKKDQSYFLARIEPWRIEKLLFPNGIYTK 177 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 E +R +A E G+ +A K +SQD+CF+ G + +K ++ EG ++ G+++G H Sbjct: 178 EEIRRIAEEAGIHVAKKQESQDVCFIPDGSIENFLKDEGITLS-EGKVITEKGEVVGHHR 236 Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G YT+GQR+GL + GE L+V S+ V+V E + + + W + Sbjct: 237 GYPLYTVGQRKGLKIEKFGERLYVREKIPESNVVVVSGLEDVFFSGLIAEDPVWHVE--- 293 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 V + F+C ++R + P V+ D+ V V FEK V GQ FY D+ Sbjct: 294 ---VPEEFRCVCRVRKKSEEAPAVVRVRDNEVEVRFEKKVFAVTPGQIAAFYDEDT---- 346 Query: 377 VLGGGIISGSKR 388 +LGG II R Sbjct: 347 LLGGAIIKEGIR 358 >gi|152990183|ref|YP_001355905.1| tRNA-specific 2-thiouridylase MnmA [Nitratiruptor sp. SB155-2] gi|205816887|sp|A6Q239|MNMA_NITSB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|151422044|dbj|BAF69548.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Nitratiruptor sp. SB155-2] Length = 339 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 130/366 (35%), Positives = 206/366 (56%), Gaps = 33/366 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 ++VVAMSGGVDSS A LL+ GY+VIGV ++ + + +++ + ++V Sbjct: 3 KKIVVAMSGGVDSSYTANLLQSRGYEVIGVYMKFHPREE--------YHQKNIANIQKVA 54 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + ++V D + F+ V PF SY AG TP PC CNR +KF++L+ +LG D Sbjct: 55 KHLGIEYHVLDRTKEFQERVYQPFVDSYVAGLTPNPCAMCNRVMKFTELIEFADELGVDN 114 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY ++ DG+ + D +DQSYFLF ++ L + FPLGD KE+V Sbjct: 115 VATGHYAKT------DGQ---FIYEATDKSKDQSYFLFNLKKEFLPRIIFPLGDWYKENV 165 Query: 201 RDLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 + A ++ L IA++ +S +ICFV+ Y DV+K + + G++V +G+++G H G Sbjct: 166 KKEAMKILLLKSIAEQKESSEICFVE-TNYIDVLKEHTE-VEMPGEVVDTHGKVIGEHKG 223 Query: 259 IINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+R+G + +P +V+ + + +R++VG +E LE +I LR +N D Sbjct: 224 YMHYTIGKRKGFRLFKAHQPHYVLDIIPHKNRIVVGTKEQLEKRQIVLRGLNMFLDQ--- 280 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 F C++KIR VP V+ + V ++ GVA GQA VFY + +V Sbjct: 281 ----KEFDCYIKIRYRTHKVPCHVKIDGSVASVTLKEPVYGVAKGQAGVFYDEE----KV 332 Query: 378 LGGGII 383 LGGG I Sbjct: 333 LGGGWI 338 >gi|123966685|ref|YP_001011766.1| tRNA-specific 2-thiouridylase MnmA [Prochlorococcus marinus str. MIT 9515] gi|205816903|sp|A2BXZ8|MNMA_PROM5 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|123201051|gb|ABM72659.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prochlorococcus marinus str. MIT 9515] Length = 390 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 140/385 (36%), Positives = 205/385 (53%), Gaps = 32/385 (8%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 +K+ K +VV +SGGVDSS+ AALL DG+ V G+TL L K +GSCC+ + + Sbjct: 18 NKSKKQKHIVVGLSGGVDSSLSAALLMEDGWKVEGLTLWLM------KGEGSCCS-EGLV 70 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-T 133 DA +C+ + + H + D F VI Y +G TPLPC CN+ VKF ++L Sbjct: 71 DAAGLCEDLGIQHNILDSRVIFEREVIKKTTEGYESGYTPLPCSMCNKNVKFEEMLKFVI 130 Query: 134 RQLGADVLATGHYIRSRLYVGDDGK-------RRRIMCRPMDLERDQSYFLFATTQQQLC 186 +Q +ATGHY R + + ++ R D +DQSYFL++ +Q+ L Sbjct: 131 KQKEFTYIATGHYARVIKSSCEHINNSENFQFKDFLLLRGADRNKDQSYFLYSLSQEVLS 190 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGI-ALEGDI 245 L PLGD+KKE R A +GL A K +SQD+C V+ Y + K I+ + G+I Sbjct: 191 RLILPLGDLKKEETRKEALRLGLRTAKKPESQDLCLVEH--YGSMQKFIDNHVKTKNGEI 248 Query: 246 VHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL 305 H+NG+ LG HNGI ++TIGQR+GLG+A EPL+V LDK + V V + L + Sbjct: 249 KHINGKTLGTHNGIQHFTIGQRKGLGIAWPEPLYVESLDKQKNIVYVANKNDLLKREAII 308 Query: 306 REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD------GVYVDFEKSEVGV 359 +E+NW+ +A + + +IR +PV + + FE ++ V Sbjct: 309 KEVNWVSI----EAPIKEIEVEAQIRYRSEPVKGILVPLKSKDNLTKRFKLIFEDNQSSV 364 Query: 360 ASGQACVFYTSDSNEARVLGGGIIS 384 GQA VFY + +LGGG+IS Sbjct: 365 TPGQAAVFYKGEI----LLGGGLIS 385 >gi|182435820|ref|YP_001823539.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776445|ref|ZP_08235710.1| tRNA-specific 2-thiouridylase mnmA [Streptomyces cf. griseus XylebKG-1] gi|205828974|sp|B1VZW7|MNMA_STRGG RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|178464336|dbj|BAG18856.1| putative tRNA (5-methylaminomethyl-2-thiouridine)-methyltransferase [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656778|gb|EGE41624.1| tRNA-specific 2-thiouridylase mnmA [Streptomyces cf. griseus XylebKG-1] Length = 378 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 142/384 (36%), Positives = 194/384 (50%), Gaps = 24/384 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDA 76 + +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G CC +D DA Sbjct: 7 RPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDA 65 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL L Sbjct: 66 RRAADVIGIPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALAL 125 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194 G D + TGHY L +DG R + R D+ +DQSY L ++QL FPLGD Sbjct: 126 GFDAVCTGHYATVVL--AEDGS--RELHRASDMAKDQSYVLGVLDEKQLAHAMFPLGDTL 181 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 K+ +R A GL +A K DS DICF+ G + G A EGDI+ +G LG Sbjct: 182 TTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLANRLGGPA-EGDILDESGTKLG 240 Query: 255 RHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 H G +TIGQR+GL + G+P +V+ + ++ V VGP E+L+V + + W Sbjct: 241 THEGAFGFTIGQRKGLKIGHPAPDGKPRYVLDISPVNNTVTVGPVEALDVTALTAIKPRW 300 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 G ++R+ V + D + V F + GVA GQA V Y Sbjct: 301 CG-----TPPSGPGTYTAQLRAHGGESEVTAELVDGTELNVTFTEPVRGVAPGQAVVLYD 355 Query: 370 SDSNEARVLGGGIISGSKRSDAVE 393 RV+G I+ + R + V Sbjct: 356 G----TRVVGSATIATTVRRERVA 375 >gi|328885206|emb|CCA58445.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces venezuelae ATCC 10712] Length = 381 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 139/378 (36%), Positives = 189/378 (50%), Gaps = 24/378 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDA 76 K +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G CC +D DA Sbjct: 3 KTLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL L Sbjct: 62 RRAADVIGIPFYVWDLAERFREDVVDDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALAL 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD-- 194 G D + TGHY L + R + R D+ +DQSY L ++QL FPLGD Sbjct: 122 GFDAVCTGHYATVVL----NEDGSRELHRASDMAKDQSYVLGVLDEKQLAHAMFPLGDTL 177 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 K+ +R A GL +A K DS DICF+ G + EGDIV G +G Sbjct: 178 TTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGRA--EGDIVDEAGAKVG 235 Query: 255 RHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 H G +TIGQR+GL + G+P +V+ + ++ V VGP E+L+V + + W Sbjct: 236 THEGAYGFTIGQRKGLRIGHPAADGKPRYVLDISPVNNTVTVGPVEALDVTALTAIKPRW 295 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 G A + ++R+ V D + V F++ GVA GQA V Y Sbjct: 296 CG-----TAPEGEGRYTAQLRAHGGETEVTASLADGELTVSFDEPVRGVAPGQAIVLYDG 350 Query: 371 DSNEARVLGGGIISGSKR 388 RV+G I+ + R Sbjct: 351 ----TRVVGSATIATTVR 364 >gi|317490186|ref|ZP_07948674.1| tRNA methyl transferase [Eggerthella sp. 1_3_56FAA] gi|316910680|gb|EFV32301.1| tRNA methyl transferase [Eggerthella sp. 1_3_56FAA] Length = 352 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 132/364 (36%), Positives = 189/364 (51%), Gaps = 23/364 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+ + MSGGVDS+V AALL R GY+V+GVT + ++ + A VC Sbjct: 6 RIALGMSGGVDSAVSAALLMRAGYEVVGVTCRFRDNAATERAAADAAA---------VCS 56 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H + F V+ PF SSYAAG TP PCV CN K L+ V +LG D + Sbjct: 57 QLGIRHETPECVGEFERCVVEPFVSSYAAGLTPSPCVGCNARCKMPALVRVADELGCDRI 116 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R ++ R +D +DQSY L +Q+QL L PLG M K VR Sbjct: 117 ATGHYARIARLSD---SGRFVVKRALDARKDQSYMLSLLSQEQLARLVLPLGAMTKAEVR 173 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A ++GL +A+K++SQD CF++ G Y ++ A GDIV G +LG H G+ N Sbjct: 174 VIAADLGLVVAEKAESQDNCFIE-GDYRPFLRARGVEDA-PGDIVDRMGNVLGCHEGLAN 231 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YT+GQR+G+GVA EP +VV + ++VG + + + + +NW A+ Sbjct: 232 YTVGQRKGIGVAGPEPYYVVEKRVETRELVVGFADETLIGSVVVGGMNW----QAYPALG 287 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 + + VK+R P ++ DD V + + A GQ V Y D+ VLGG Sbjct: 288 ESYDAMVKLRYRSRPCACIIEPEDDQRVSLALRSPQPTTAPGQYAVLYDGDT----VLGG 343 Query: 381 GIIS 384 G+I Sbjct: 344 GMIE 347 >gi|224093431|ref|XP_002187736.1| PREDICTED: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1 [Taeniopygia guttata] Length = 556 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 101/375 (26%), Positives = 165/375 (44%), Gaps = 44/375 (11%) Query: 43 DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIV 102 +GY V GV ++ ++ +G+C +D DA RVC +++ + Y + + N V Sbjct: 160 EGYQVTGVFMKNWDPLD---EQGACSIDRDCEDAYRVCQKLDIPFHQVSYVKEYWNEVFS 216 Query: 103 PFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRR 161 Y G TP P + CN+ +KF+ L LGAD +ATGHY R+ L + ++ Sbjct: 217 DLLKEYELGRTPNPDILCNKHIKFNYFLHYAVDNLGADAIATGHYARTSLEDEEVFHQKH 276 Query: 162 ------------------IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 + + DL +DQ++FL +Q L FPLGD+ K V+ + Sbjct: 277 TKRPQRLLRIRFEVRNTVKLLQGADLFKDQTFFLSQISQDALRKTIFPLGDLTKSFVKKI 336 Query: 204 AREMGL-DIADKSD--------SQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQIL 253 A E L + K + S +CF+ + + + + G+ V + + +++ Sbjct: 337 AAEHDLHHVLKKKEACSMFLFQSMGVCFIGERNFENFLLEYLE--PQPGNFVSIEDKKVM 394 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINW 310 GRH G +TIGQR L + + FVV D ++ V V P +L + ++W Sbjct: 395 GRHKGWFLFTIGQRARL-AGLKDAWFVVDKDVSTGNVFVAPTRDHPALYRDLLRTNRVHW 453 Query: 311 LGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368 + + + V + +C + R VP + N DG V+V K + GQ VFY Sbjct: 454 IAEEPPAELVREKMMECHFRFRHQMALVPCVLTLNQDGSVWVTLVKPARAITPGQFAVFY 513 Query: 369 TSDSNEARVLGGGII 383 D LG G I Sbjct: 514 KGD----ECLGSGKI 524 Score = 79.8 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Query: 43 DG--YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAV 100 G Y V GV ++ ++ +G+C +D DA RVC +++ + Y + + N V Sbjct: 33 QGHRYQVTGVFMKNWDPLD---EQGACSIDRDCEDAYRVCQKLDIPFHQVSYVKEYWNEV 89 Query: 101 IV 102 Sbjct: 90 FR 91 >gi|322802160|gb|EFZ22595.1| hypothetical protein SINV_00348 [Solenopsis invicta] Length = 417 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 114/405 (28%), Positives = 186/405 (45%), Gaps = 46/405 (11%) Query: 21 MR-VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 MR VVV +SGGVDS+V A LLK G++V GV ++ ++ R + G C +D DAR + Sbjct: 2 MRNVVVGISGGVDSAVAAFLLKIKGFNVTGVFMKNWDIRDET---GKCMVEKDYDDARWI 58 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGA 138 CD + + ++ + + N V Y G TP P + CN+ +KF + R + A Sbjct: 59 CDKLKIPLIQVNFVKEYWNEVFSDIVEKYQNGYTPNPDILCNKNIKFDKFFHLARNRFQA 118 Query: 139 DVLATGHYIRSR----LYVGDDGKRRR----IMCRPMDLERDQSYFLFATTQQQLCDLRF 190 D +ATGHY ++ L + K + + + D +DQ++FL Q+ L F Sbjct: 119 DAIATGHYAKTSFGAYLENYEANKSKYLLNVRLLQAQDSNKDQTFFLSQVPQETLRHCMF 178 Query: 191 PLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 PLG K V+ +A E GL IA K +S ICFV + ++ + A GD + L+ Sbjct: 179 PLGTHLKNHVKMMATEAGLCQIARKKESMGICFVGKREFQHFISEYIAD--KPGDYIDLD 236 Query: 250 -GQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYL 305 G ++G+H+GI TIGQR + + +P +V D+ S+ VIV +L + Sbjct: 237 SGLLIGKHDGIHKRTIGQRCNISGCL-KPYYVFSKDQESNTVIVVGGTTHPALYSDFLIT 295 Query: 306 REINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363 REI+W+ + E +G C + + + V + ++ +++ + + GQ Sbjct: 296 REIHWINEEPRELRRNNGVLNCNFRFQHRNPLIACKVYKMSNGRLFIRLDAPLRAITKGQ 355 Query: 364 -------------------ACVFYTSDSNEARVLGGGIISGSKRS 389 V Y+ + LG IS + S Sbjct: 356 RYDLDLILVTPRKVKLIGSYAVLYSGE----ECLGSSAISYTGPS 396 >gi|170079302|ref|YP_001735940.1| tRNA-specific 2-thiouridylase MnmA [Synechococcus sp. PCC 7002] gi|169886971|gb|ACB00685.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Synechococcus sp. PCC 7002] Length = 318 Score = 374 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 126/324 (38%), Positives = 178/324 (54%), Gaps = 17/324 (5%) Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 KG CC+ V DA +C+ + + H++ D + F+ ++ S Y G TPLPC CNR Sbjct: 4 KGQCCSEGMV-DAADICEQLGIPHHIVDSRDLFQKYIVDYVVSGYEVGVTPLPCSQCNRM 62 Query: 124 VKFSDLLSVTR-QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 VKF +L + +LG D +ATGHY R R +D R + R +D +DQSYFL+ TQ Sbjct: 63 VKFGPMLQWAKAELGIDQIATGHYARIRY---NDQTGRYELLRAVDRHKDQSYFLYDLTQ 119 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIAL 241 + L FPLG+M K R +A EM L A K +SQD+C ++ G + + Sbjct: 120 EMLAGTLFPLGEMTKGETRQIAAEMQLSTAKKPESQDLCLIEAHGSMKTFLDKYIEQ--R 177 Query: 242 EGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH 301 EG+IV L+G++LG H GI +YTIGQR+GLG+A EPL+VV LD +RV+V R+ Sbjct: 178 EGEIVDLDGKVLGHHTGIHHYTIGQRKGLGIAAPEPLYVVKLDNVMNRVVVSTRDRAGQS 237 Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVA 360 ++ +NWL + + V++R VPV V D + + FE+ + G+ Sbjct: 238 ECTVQRMNWLAL----PGITSPIRAEVQVRYRSGAVPVTVIPLEGDRLKLVFEEPQFGIT 293 Query: 361 SGQACVFYTSDSNEARVLGGGIIS 384 GQA V Y D RVLGGGII Sbjct: 294 PGQAAVLYDGD----RVLGGGIIE 313 >gi|72161001|ref|YP_288658.1| tRNA-specific 2-thiouridylase MnmA [Thermobifida fusca YX] gi|123733604|sp|Q47SD2|MNMA_THEFY RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71914733|gb|AAZ54635.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermobifida fusca YX] Length = 363 Score = 374 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 140/376 (37%), Positives = 196/376 (52%), Gaps = 23/376 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRV 79 RV+ AMSGGVDS+V AA GYDV GV L L +S S R G CC +D DARR Sbjct: 4 RVLAAMSGGVDSAVAAARAVEAGYDVTGVHLAL-SSNPQSYRTGARGCCTIEDSRDARRA 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + Y++D E F V+ F + YAAG TP PC+ CN +KF +L LG D Sbjct: 63 ADVIGIPFYIWDMAEEFDRDVVQDFVAEYAAGRTPNPCLRCNEKIKFQAVLERALALGFD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 + TGH++R ++G+ + R +D +DQSY L T++QL FPLGD KE Sbjct: 123 AVCTGHHVRL-----ENGR----LRRSVDAVKDQSYVLAVLTREQLAHAIFPLGDCTKEE 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A GL +ADK DS DICF+ G ++R + G IV GQ++G H G Sbjct: 174 VRAEAARRGLTVADKPDSHDICFIADGDTSGFLERRLG--SNPGPIVDETGQVVGEHRGA 231 Query: 260 INYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 +T+GQRRGL + +V+ ++ S+ V VGPRE+L+V RI W G E+ Sbjct: 232 HAFTVGQRRGLNLSGAPHRRYVLSIEPVSNTVRVGPREALQVDRIVGERPVWSGCEPPEE 291 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 V++R+ + ++ + V + ++ +GVA GQA V Y D V+ Sbjct: 292 WTPF----LVQLRAHGEVYSCRARQYEGRVEILLDEPALGVAKGQAAVLYDGDV----VM 343 Query: 379 GGGIISGSKRSDAVEE 394 G I+ + R + Sbjct: 344 GSSTIAETSRVEQAAA 359 >gi|149197386|ref|ZP_01874437.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lentisphaera araneosa HTCC2155] gi|149139404|gb|EDM27806.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lentisphaera araneosa HTCC2155] Length = 353 Score = 374 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 104/371 (28%), Positives = 177/371 (47%), Gaps = 24/371 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ + +SGGVDSSV LLK +G +++ L+++ G C +D+ R V Sbjct: 1 MKIAMLLSGGVDSSVALRLLKEEGGHEITAFYLKIWL-EDELAFLGECPWEEDMQYVRAV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C+ +++ V ++ + + V+ + G TP P + CN +KF + D Sbjct: 60 CEELDIPLQVVPLQKEYMDRVVSYVLAELKQGRTPSPDILCNERIKFGAFFDAIDET-YD 118 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY + V ++ + + R D +DQ+YFL + +Q QL FP+G + K Sbjct: 119 KVATGHYAQ----VQENEEGIFELLRAPDPVKDQTYFLSSLSQAQLSRALFPIGSLMKSR 174 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258 VR+LA E L + DSQ ICF+ + Y D V+ +GDI+ + + G H G Sbjct: 175 VRELAEEYDLPNKVRKDSQGICFLGKISYPDFVRFHLGE--KQGDIIEIETDEKKGEHKG 232 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDGL 315 + +TIGQR GLG++ G P +VV D ++ V + + L + + ++W Sbjct: 233 VWFHTIGQRSGLGLSGG-PWYVVKKDLATNIVYISHKNGLEDQLRDEVTVNTVHWTSGKF 291 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFV-QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 ++ VK+R V + + V++ + + G+A GQ+C+FY Sbjct: 292 PKNT-----NLKVKLRHGPQLVEARIMDLGESRVFIKLAEKDKGIAPGQSCIFYDD---- 342 Query: 375 ARVLGGGIISG 385 LG G+I Sbjct: 343 LICLGRGVIEK 353 >gi|325970705|ref|YP_004246896.1| tRNA-specific 2-thiouridylase mnmA [Spirochaeta sp. Buddy] gi|324025943|gb|ADY12702.1| tRNA-specific 2-thiouridylase mnmA [Spirochaeta sp. Buddy] Length = 356 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 129/375 (34%), Positives = 190/375 (50%), Gaps = 29/375 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR---KGSCCAGQDVYDA- 76 M+V+V MSGG+DSSV A LLK+ G++V+GVT+ ++N R R SC A D Sbjct: 1 MKVLVGMSGGIDSSVAAYLLKQQGHEVMGVTMTIWNKRSHLTRPLNSTSCFAPDKTEDII 60 Query: 77 --RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 +++C+ I + H V + + F V+ F + Y G TP PCV CN +KF ++ + Sbjct: 61 AIKKICEKIGIEHQVLELSDLFEEIVLANFKTEYMDGRTPNPCVWCNSKIKFGAMVEYAK 120 Query: 135 QLGADV--LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 + G D ATGHY R + R + + +DL++DQSYFL+ QQQL FPL Sbjct: 121 ESGLDFDRFATGHYARIV-----EENGRYAVAKAVDLKKDQSYFLYRLNQQQLARTLFPL 175 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI 252 G M KE VR + G + +SQD G Y D++ + G+IV+ G++ Sbjct: 176 GAMTKEEVRRIDVAQGFHKVYQEESQDFY---DGDYTDLLD----ITSRPGNIVNRQGRV 228 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 LGRH GI +YTIGQR+GLG+A PL+V+ L +++ V+VG E + ++ W Sbjct: 229 LGRHEGIWHYTIGQRKGLGIAAERPLYVLALRSDTNEVVVGFVEDTLQSTVTAGDVVWSS 288 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 + V+ KIRS+ +N DG + F GQ+ V Y Sbjct: 289 VQTLQQEVM----VQAKIRSTGFATEAKAHQNPDGSITAIFSDEVKAATVGQSLVLYDG- 343 Query: 372 SNEARVLGGGIISGS 386 +L GGII + Sbjct: 344 ---PVILCGGIIVQA 355 >gi|29349296|ref|NP_812799.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides thetaiotaomicron VPI-5482] gi|29341204|gb|AAO78993.1| putative tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Bacteroides thetaiotaomicron VPI-5482] Length = 351 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 115/366 (31%), Positives = 176/366 (48%), Gaps = 33/366 (9%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGG+DS+ +L+ GY+++GVT++++ DAR + + + Sbjct: 1 MSGGIDSTATCLMLQEQGYEIVGVTMRVWGDEP--------------QDARELAARMGIE 46 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 HYV D F+ ++ F Y G TP PCV CN KF L +L +ATGHY Sbjct: 47 HYVADERIPFKETIVKNFIDEYKQGRTPNPCVMCNPLFKFRVLAEWADKLDCAYIATGHY 106 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 R G + D ++DQSYFL+ Q L FPLGD K VR+ E Sbjct: 107 SRLEERSG-----HIYIVAGDDDKKDQSYFLWRLGQDILKRCIFPLGDYTKIKVREYLAE 161 Query: 207 MGLDIA-DKSDSQDICFVQQGKYFDVVKRINAGI---ALEGDIVHLNGQILGRHNGIINY 262 G + + +S ++CF+ QG Y D ++ + G V+ G LG+H G Y Sbjct: 162 KGYEAKSKEGESMEVCFI-QGDYRDFLREQCPELDTEIGPGWFVNSEGVKLGQHKGAPYY 220 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVD 322 TIGQR+GL +A+G+P +V+ ++ + V++G E L+ + + + E + Sbjct: 221 TIGQRKGLEIALGKPAYVLKINPQKNTVMLGDAEQLQTEYMLAEQ----DRIVDEQELFS 276 Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 V+IR P+P V+R +DG + V F ++ VA GQ+ VFY RVLGG Sbjct: 277 CENLAVRIRYRSRPIPCRVKRLEDGRLLVRFRETASAVAPGQSAVFYDG----RRVLGGA 332 Query: 382 IISGSK 387 I+ + Sbjct: 333 FIASQR 338 >gi|318059485|ref|ZP_07978208.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces sp. SA3_actG] gi|318081277|ref|ZP_07988609.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces sp. SA3_actF] Length = 372 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 138/377 (36%), Positives = 187/377 (49%), Gaps = 24/377 (6%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRVCD 81 + AMSGGVDS+V AA G+DV GV L L ++ S R G CC +D DARR D Sbjct: 2 LAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDARRAAD 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL LG D + Sbjct: 61 VIGIPFYVWDLAERFREDVVDDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALALGFDAV 120 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKES 199 TGHY R + R + R D+ +DQSY L +QL FPLGD K+ Sbjct: 121 CTGHYARVLTHPD----GSRELHRASDMAKDQSYVLGVLDDRQLAHAMFPLGDTETTKDE 176 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R A GL +A K DS DICF+ G + EGDIV +G LG H G Sbjct: 177 IRAEAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGTA--EGDIVDESGTRLGTHQGA 234 Query: 260 INYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 +TIGQR+GL + G+P +V+ + + V VGPRESL+V + W G Sbjct: 235 YGFTIGQRKGLRIGHPAADGKPRYVLDISPVDNTVTVGPRESLDVASLTAVRPRWCG--- 291 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 A + + ++R+ V + D + V F+ GVA GQA V Y Sbjct: 292 --TAPLTAGRYTAQLRAHGGECEVRAELAGDELRVAFDAPVRGVAPGQAVVLYDG----T 345 Query: 376 RVLGGGIISGSKRSDAV 392 RV+G I+ +++ + Sbjct: 346 RVVGSATIATTRKPEPA 362 >gi|218779733|ref|YP_002431051.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfatibacillum alkenivorans AK-01] gi|218761117|gb|ACL03583.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfatibacillum alkenivorans AK-01] Length = 356 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 121/366 (33%), Positives = 189/366 (51%), Gaps = 19/366 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+ +AMSGGVDS + A LLK+ D++G+ + G + + R Sbjct: 4 RIAIAMSGGVDSMISAYLLKQTCRDMVGIHF-ITGFENEGAPPGPDGVPEPL---ARASK 59 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGADV 140 +++ V + +E F V+ PF +Y G TP PC+ CNRTVKF LL R + A+ Sbjct: 60 ELDLPIEVVNLQEEFHTHVVAPFVDTYLKGRTPNPCMVCNRTVKFGALLDAARNRFNAEK 119 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R R D R + + DL++DQSYFL +Q QL FPLG+ K+ + Sbjct: 120 IATGHYARVRP----DSAGRFRLVKGADLKKDQSYFLGFLSQAQLGAAVFPLGEFTKDQI 175 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R+ A E+GLD K +SQ+ CF+ +Y D ++ + GD+V++ G+++GRH G+ Sbjct: 176 REKAVELGLDKYTKPESQETCFIADDRYRDFLQNQPGFPSRPGDVVNVQGEVIGRHQGVF 235 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 +TIGQRRG+ + E +V +D ++R+ V + L +++ +NW+ Sbjct: 236 AFTIGQRRGINIPASEAYYVQAIDPAANRITVCFKSGLLSRGVHVGGVNWIV-----PPQ 290 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + F+ +IR ++ +DG V V F++ + V GQ VFY D VLG Sbjct: 291 KNAFEAATRIRYRHKEAASAIEVLEDGTVNVWFDEPQSAVTPGQGAVFYQED----EVLG 346 Query: 380 GGIISG 385 G I Sbjct: 347 AGWIDK 352 >gi|302542324|ref|ZP_07294666.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces hygroscopicus ATCC 53653] gi|302459942|gb|EFL23035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces himastatinicus ATCC 53653] Length = 372 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 142/388 (36%), Positives = 191/388 (49%), Gaps = 28/388 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV GV L L ++ S R G CC +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL LG Sbjct: 60 AADVIGIPFYVWDLAERFREDVVEDFIAEYEAGRTPNPCLRCNEKIKFAALLDKALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MK 196 D + TGHY V D + R D+ +DQSY L ++QL FPLGD Sbjct: 120 DAVCTGHYAT----VVRDDNGVLELHRASDMAKDQSYVLGVLDERQLAHAMFPLGDTLTT 175 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K+ +R A GL +A K DS DICF+ G + R EGDIV GQ LG H Sbjct: 176 KDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLSRHLGTA--EGDIVDEGGQKLGTH 233 Query: 257 NGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G +TIGQR+GL + G+P +V+ + ++ V VGP E+L+V + + W G Sbjct: 234 EGAYGFTIGQRKGLRIGHPAADGKPRYVLDISPVNNTVTVGPVEALDVSALTAIKPRWCG 293 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR----NDDGVYVDFEKSEVGVASGQACVFY 368 A ++R+ V + + + V F + GVA GQA V Y Sbjct: 294 -----AAPTGPGTYTAQLRAHGGETEVTAEPVGGADGGELRVSFAEPVRGVAPGQAIVLY 348 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEESL 396 RV+G I+ ++RS + Sbjct: 349 DG----TRVVGSATIAATERSRPAVQQA 372 >gi|255544898|ref|XP_002513510.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ricinus communis] gi|223547418|gb|EEF48913.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ricinus communis] Length = 497 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 111/398 (27%), Positives = 172/398 (43%), Gaps = 23/398 (5%) Query: 3 VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK 62 + E L+ DKN ++R+ + +SGGVDSSV LL G+ L+++ Sbjct: 55 IIEPNYLSCCLPDKN--NLRIALLLSGGVDSSVALRLLHAAGHHCTAFYLKIWFQEDFEN 112 Query: 63 RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122 C +D+ A+ VCD +++ V + + V+ Y G TP P V CN Sbjct: 113 FWSECPWEEDLKYAKAVCDQVDIPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNT 172 Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQ 182 +KF + + D +A+GHY + D+ + ++ D+ +DQ+YFL +Q Sbjct: 173 RIKFGAFMDAINNMEFDYVASGHYAKVIHPSADEINQPSVLELSKDMVKDQTYFLSHLSQ 232 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALE 242 QL L FPLG + K+ VR LA L D+ DSQ ICF+ + K+ + V R +E Sbjct: 233 AQLRRLIFPLGGISKDEVRKLATLFNLPNKDRKDSQGICFLGKIKFSEFVARHIGE--ME 290 Query: 243 GDIVH-LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVH 301 G ++ G LG H G YTIGQR+GL + G P +VV D ++ V V Sbjct: 291 GIMLEAETGDFLGNHRGFWFYTIGQRQGLRLPGG-PWYVVEKDVKNNVVFVSRNYFSFDK 349 Query: 302 R---IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGV------YVDF 352 R + + + W + + K+R V V V Sbjct: 350 RRRLLRVGSLRWFNGS----PPKETSELQCKVRHGPGFYNCSVVIEPGEVDDQDVAIVQL 405 Query: 353 EKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSD 390 + + G+A+GQ FY +G G+I S Sbjct: 406 CEDDQGLAAGQFAAFYKG----RTCIGSGVILESWNDQ 439 >gi|302819257|ref|XP_002991299.1| hypothetical protein SELMODRAFT_44688 [Selaginella moellendorffii] gi|300140879|gb|EFJ07597.1| hypothetical protein SELMODRAFT_44688 [Selaginella moellendorffii] Length = 375 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 116/371 (31%), Positives = 171/371 (46%), Gaps = 18/371 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV V +SGGVDSSV LL G+ ++++ SC +D+ A+ VCD Sbjct: 2 RVAVLVSGGVDSSVALRLLCAAGHSCTAFYIKIWFQEDFQNFWSSCPWEEDLKYAQDVCD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + V + + + N V+ + AG TP P + CN VKF L + D + Sbjct: 62 EVGVKLEIVHLTDVYWNKVVSKCITEVRAGRTPNPDIMCNTVVKFGAFLDHIDRTKFDRV 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 A+GHY R YV + G R + D +DQ+YFL +Q+QL L FPLG + K VR Sbjct: 122 ASGHYARVERYVDEQGTIRARLKLSKDEVKDQTYFLSQLSQEQLGFLMFPLGSLAKPEVR 181 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG-DIVHLNGQILGRHNGII 260 LA + L D+ DSQ ICF+ + K+ D + R EG I G+ +G+H G Sbjct: 182 QLAHSLNLPNKDRKDSQGICFLGKVKFSDFISRHLGE--KEGLLIEAETGKTMGKHKGFW 239 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE---SLEVHRIYLREINWLGDGLFE 317 YTIGQRRG+ ++ G P +VV D + V + + Y+ ++W Sbjct: 240 FYTIGQRRGISLSHG-PWYVVAKDSEKNLVYISRHYFSGDKKRRNFYVDNLSWFSTIPD- 297 Query: 318 DAVVDGFKCFVKIRSSQDPVPV--FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 KC K+R V+R G V ++ +A+GQ FY ++ Sbjct: 298 --PSCPIKC--KVRHGPSFHDCELEVEREKQGARVKLLHNDQALAAGQYAAFYAGET--- 350 Query: 376 RVLGGGIISGS 386 LG G+I+ S Sbjct: 351 -CLGSGMITES 360 >gi|261415273|ref|YP_003248956.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371729|gb|ACX74474.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327007|gb|ADL26208.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 355 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 122/368 (33%), Positives = 183/368 (49%), Gaps = 18/368 (4%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 RV V MSGGVDSSV A LL++ GY+V+GVTL++ ++ V A+ Sbjct: 2 SKTRVAVGMSGGVDSSVAALLLQQQGYEVVGVTLRVLPDVDSAF---DVENDPSVVRAKM 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + H+V + + F V+ + ++ TP PC CNR +KF ++ + LGA Sbjct: 59 IAEKLGIEHHVANCSDAFTGEVLKRCHADFSHARTPNPCCYCNRFIKFGWMMDYAKSLGA 118 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + LATGHY+R ++ R + R D +DQSYFLF ++ + PLG K Sbjct: 119 EFLATGHYVRI-----EEVNGVRRLLRGRDPGKDQSYFLFWVPDERRNHVLTPLGTYVKS 173 Query: 199 SVRDLAREMGLDIADKSDSQDICF-VQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR++A + G A DSQDICF + +Y + +K + G V G++ H+ Sbjct: 174 EVREIAAQNGFVNAKTGDSQDICFDIYGSQYTEFLKDRFGEMTRPGRFVDEKGKVWNTHD 233 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV-GPRESLEVHRIYLREINWLGDGLF 316 G YT+GQR+GLGVA+G P FV ++D + ++V G + S+ R+ + W G Sbjct: 234 GFHKYTVGQRKGLGVAIGVPAFVKHVDPETGDILVTGDKSSVCFDRVEMVNCEWHGGV-- 291 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 V F+ +R Q V V D + F++ V GQ VFY D Sbjct: 292 -REVGTTFRAEGMVRYRQRAVGCEVTIVDTNKAVAVFDEPLFAVTPGQCAVFYDGD---- 346 Query: 376 RVLGGGII 383 VLGGG I Sbjct: 347 MVLGGGQI 354 >gi|296270802|ref|YP_003653434.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Thermobispora bispora DSM 43833] gi|296093589|gb|ADG89541.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Thermobispora bispora DSM 43833] Length = 362 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 138/374 (36%), Positives = 192/374 (51%), Gaps = 24/374 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASK-RKGSCCAGQDVYDAR 77 + +RV+ AMSGGVDS+V AA + +G++V+GV L L + ++ + CC +D DAR Sbjct: 5 RKLRVLAAMSGGVDSAVAAARIAEEGHEVVGVHLALSPNPRSHRVGARGCCTLEDARDAR 64 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 R D I + YV+D ERF V+ F S YAAG TP PC+ CN +KFS +L LG Sbjct: 65 RAADVIGIPFYVWDMAERFHRDVVEDFVSEYAAGRTPNPCLRCNEKIKFSAVLDRALALG 124 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D +ATGH+ R V + R +D +DQSY L T++QL FPLG K Sbjct: 125 FDAVATGHHARLIDGV---------LRRSVDASKDQSYVLGVLTREQLKHAIFPLGGSTK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRH 256 VR A GL +ADK DS DICF+ G + EG IV L G++LG H Sbjct: 176 AEVRAEAARRGLAVADKPDSHDICFIADGDTRAFLAERLGTA--EGPIVDALTGEVLGTH 233 Query: 257 NGIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G +TIGQR+GLG+ G P +V+ ++ S+ V VGPR L+V RI W Sbjct: 234 RGAYGFTIGQRKGLGLERPAPDGRPRYVLSIEPVSNTVKVGPRSRLQVTRIIGERPVW-- 291 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + C V++R+ + + +++D + GVA GQA V Y D Sbjct: 292 -NGPVAEPYEPITCSVQLRAHGEVYGCRAWVEEGRLHIDLDTPAYGVAPGQAAVLYQDD- 349 Query: 373 NEARVLGGGIISGS 386 V+G I+ + Sbjct: 350 ---MVIGSATIASA 360 >gi|145593765|ref|YP_001158062.1| tRNA-specific 2-thiouridylase MnmA [Salinispora tropica CNB-440] gi|145303102|gb|ABP53684.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salinispora tropica CNB-440] Length = 394 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 147/371 (39%), Positives = 202/371 (54%), Gaps = 22/371 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRV 79 RV+ AMSGGVDS+V AA G+DV GV L L + + + R G CC +D DARR Sbjct: 39 RVLAAMSGGVDSAVAAARAAEAGHDVTGVHLALARNPQ-TYRTGARGCCTLEDSRDARRA 97 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D +++ YV+D +RF+ V+ F + YAAG TP PC+ CN +KF+ +L LG D Sbjct: 98 ADVLSIPFYVWDMADRFQADVVDDFVAEYAAGRTPNPCLRCNEKIKFAAVLDRAVALGFD 157 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 + TGH+ R +G DG ++ R +DL +DQSY L T++QL FPLGD K Sbjct: 158 AVVTGHHAR----LGADG----LLRRSVDLAKDQSYVLGVLTREQLSRSMFPLGDSTKTQ 209 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258 VR A GL +ADK DS DICFV G + R GD+V + G+++GRH G Sbjct: 210 VRAEATRRGLAVADKPDSHDICFVADGDTRGFLARRLGTT--PGDVVDGDTGEVVGRHTG 267 Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 YT+GQRRGL + G P +V+ + ++ V VGP E+L V ++ R W+G Sbjct: 268 AYAYTVGQRRGLHLDRPAPDGRPRYVLSITPKTNTVTVGPAEALAVSQVQARRPVWIGG- 326 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 D +C V++R+ D VP V DDG+ + + GVA+GQA V Y D Sbjct: 327 ---PRPADPVECEVQLRAHGDVVPATVAVTDDGLRAELHQPLRGVAAGQAIVAYRPDPAG 383 Query: 375 ARVLGGGIISG 385 VLG I+ Sbjct: 384 DIVLGSATIAA 394 >gi|161833715|ref|YP_001597911.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Sulcia muelleri GWSS] gi|205828995|sp|A8Z5W4|MNMA_SULMW RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|152206205|gb|ABS30515.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Sulcia muelleri GWSS] Length = 380 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 125/398 (31%), Positives = 200/398 (50%), Gaps = 49/398 (12%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N K RV+V MSGGVDSSV A LLK+ GYDVIG+ ++ YN C +D DA Sbjct: 2 NVKRKRVIVGMSGGVDSSVAALLLKKQGYDVIGIFMKYYNFE--------CPWREDSIDA 53 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V ++ + Y+ D + ++N +I Y G TP P + CN +KF L + L Sbjct: 54 MLVSQSLKIPFYIIDITKNYKNLIIDYLYKEYKKGYTPNPDIICNSKIKFKFFLEKSIFL 113 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 +D +ATGHY+R + + ++GK + +D +DQSYFL + Q+ FPLG + Sbjct: 114 KSDFIATGHYVRKK-EINENGKISYKIISGIDSNKDQSYFLCKLNKVQIKKSIFPLGWLN 172 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN------- 249 K+ VR++A + L A+K DSQ ICF+ + K+ + +K+ A +G I+ +N Sbjct: 173 KKEVREIANKYNLINANKKDSQGICFIGKIKFLNFLKKKLAE--KKGIIIEINKNSHIFK 230 Query: 250 -----------------GQILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVI 291 G+I+G H G +T GQR+GL + + PLFV+ D + + Sbjct: 231 YKQKKLFSKKIEYKKEYGKIIGHHIGAHYFTKGQRKGLKIGGYKYPLFVIEKDITKNILY 290 Query: 292 VG---PRESLEVHRIYLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD 346 VG L I ++ I+W + + + + +IR Q+ + + ++ Sbjct: 291 VGMGKNHPGLYTKVICIKKYNIHW----INKKKIKTKIEVECRIRYRQNFKKATLYKKNN 346 Query: 347 GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 +YV+FE ++ V GQ V+Y ++ V+G G+IS Sbjct: 347 DLYVEFEIPQLAVNGGQFIVWYINN----EVIGSGLIS 380 >gi|313681611|ref|YP_004059349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfuricurvum kujiense DSM 16994] gi|313154471|gb|ADR33149.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfuricurvum kujiense DSM 16994] Length = 339 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 132/367 (35%), Positives = 199/367 (54%), Gaps = 33/367 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +V++ MSGGVDS+V LLK GYDV GV ++L++ + A+R Sbjct: 2 GKKVLIGMSGGVDSTVSTLLLKEQGYDVEGVYMKLHSKPGYHEIHQ--------ARAQRA 53 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D V ++ D +E F V PF +Y G+TP PC CNR +KF +++ +GAD Sbjct: 54 ADFAGVKLHILDLQEEFNAKVFTPFIETYKEGKTPNPCALCNRNIKFGAMVAYADSIGAD 113 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHYIR DG+ + + D +DQSYFLF + L FPLG+ K Sbjct: 114 YVATGHYIRH------DGQ---YLLQAHDDTKDQSYFLFYIDPALVPRLLFPLGERHKSD 164 Query: 200 VRDLAREM-GLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 ++ A + GL+ A +S+S +ICFV+ Y DV+K + EG++++L G+++G+H Sbjct: 165 IKAYAAGIEGLESFASQSESSEICFVETT-YMDVLKPYVP-VDQEGEVLNLEGKVVGKHK 222 Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G ++YTIG+R+G V +P FVV + ++++VG RE LE HR+ L +N Sbjct: 223 GYMHYTIGKRKGFSVHGAHDPHFVVEIKPEINQIVVGTREDLECHRVELERVNMFDSR-- 280 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 F+C VK+R V V+ + D V+ + +GVASGQA VFY + + Sbjct: 281 -----TEFECDVKLRYRTTAVRCSVKIDGDHATVELHEPVLGVASGQAGVFYDGE----K 331 Query: 377 VLGGGII 383 +LGGG I Sbjct: 332 LLGGGWI 338 >gi|305682215|ref|ZP_07405019.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium matruchotii ATCC 14266] gi|305658688|gb|EFM48191.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium matruchotii ATCC 14266] Length = 366 Score = 372 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 143/374 (38%), Positives = 195/374 (52%), Gaps = 19/374 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79 MRV+ AMSGGVDS+V AA + G+DV+GV L L +A + CC+ +D DARRV Sbjct: 1 MRVLAAMSGGVDSAVAAARAVKAGHDVVGVHLALSQDPQAVRESSRGCCSLEDSADARRV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + + YV+D+ +RF+ VI F SYA GETP PC+ CN +KF+ LL LG D Sbjct: 61 CDKLGIPFYVWDFSDRFKTDVIDDFVDSYARGETPNPCLRCNEKIKFAALLERGIALGFD 120 Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + TGHY R ++ G DG + R +D +DQSY L ++ FP+GD K Sbjct: 121 AVVTGHYARLTQPADGGDG----YLRRGVDPNKDQSYVLGVLGHHEIAHCMFPVGDTIKP 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R+ A MG +A K DS DICF+ G + G IV G L H+G Sbjct: 177 KIREEAAAMGFSVAKKPDSYDICFIPDGNTQAFLGERIGL--RPGMIVDTEGNKLREHDG 234 Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 NYTIGQR+GL + A G+P +V ++ + V VG R L V I + +L Sbjct: 235 AWNYTIGQRKGLDIKQPAADGQPRYVTDINAQTGTVTVGSRRDLSVGVIEADRLKYLH-- 292 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPV--FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 + F V++R+ VP V R D + ++ +K+ GVA GQA V Y D Sbjct: 293 ---PMMDGSFDADVQVRAHGSVVPCHVTVDREADFMRLELKKALQGVARGQAAVLYLPDP 349 Query: 373 NEARVLGGGIISGS 386 VLG G I G+ Sbjct: 350 GGDIVLGSGTICGT 363 >gi|195996679|ref|XP_002108208.1| hypothetical protein TRIADDRAFT_20051 [Trichoplax adhaerens] gi|190588984|gb|EDV29006.1| hypothetical protein TRIADDRAFT_20051 [Trichoplax adhaerens] Length = 369 Score = 372 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 107/371 (28%), Positives = 190/371 (51%), Gaps = 23/371 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + VAMSGGVDS++ A LL++ G++V+G+ ++ ++ ++ G C +D+ D + C+ Sbjct: 8 IAVAMSGGVDSTIAAYLLRKQGHEVVGIFMKNWDI---TEETGICKTDEDMQDFIKSCNH 64 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV-TRQLGADVL 141 + + H ++ + + + V PF + Y G TP P + CNR +KF+ L + LG D L Sbjct: 65 LGIPHKEVNFVQDYWHHVFSPFVNGYKQGITPNPDITCNRMIKFNKLRQYCSENLGVDNL 124 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + + + + +D +DQ+YFL + L ++ FP+G++ K V+ Sbjct: 125 ATGHYAQLVT------DSKPKLIQAVDEAKDQTYFLANVKKISLKNIMFPIGNLLKSEVK 178 Query: 202 DLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 +LA ++GL IA K +S +CF+ + + + E D+ ++GQ G+H+ + Sbjct: 179 NLALKIGLRKIATKKESMGVCFIGKRNFKTFISEYIEN--QEYDVNTIDGQNFGKHSNLS 236 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGD-GLF 316 TIG+R +G M E +VV D N + + P +L Y+ + NW+ Sbjct: 237 LSTIGERARIG-GMSERWYVVSKDSNRKVITLAPGINHPALYCRIFYVADANWISYCAEM 295 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375 + ++ +C ++IR VP ++ +G + V+ ++S V GQ FY + Sbjct: 296 QLSLRKELECHIRIRHLAPLVPCLIKLQYNGFLEVNSQQSLFAVTPGQFAAFY----SRN 351 Query: 376 RVLGGGIISGS 386 LGGG I S Sbjct: 352 ECLGGGQIVSS 362 >gi|271969310|ref|YP_003343506.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Streptosporangium roseum DSM 43021] gi|270512485|gb|ACZ90763.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Streptosporangium roseum DSM 43021] Length = 356 Score = 372 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 141/371 (38%), Positives = 193/371 (52%), Gaps = 25/371 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRV 79 RV+ AMSGGVDS+V AA + G+DV GV L L ++ S R G CC +D DARR Sbjct: 4 RVLAAMSGGVDSAVAAARIAEAGHDVTGVHLAL-SANPQSYRTGARGCCTIEDSRDARRA 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + Y++D ERF V+ F S YAAG TP PC+ CN +KF +L LG D Sbjct: 63 ADVIGIPFYIWDMAERFHRDVVEDFVSEYAAGRTPNPCLRCNEKIKFEAVLDRALALGFD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGH+ R V + R D +DQSY L T++QL FPLGD K Sbjct: 123 AVATGHHARIADGV---------LSRSPDEGKDQSYVLGVLTREQLKHAIFPLGDSTKAQ 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR+ A GL +ADK DS DICF+ G + A +G IV +G ++GRH G Sbjct: 174 VREEAARRGLMVADKPDSHDICFIADGDTRGFLADRLG--AEQGPIVDESGAVVGRHEGA 231 Query: 260 INYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 +T+GQR+GL + G P +V+ ++ S+ V VGPR +LEV I W Sbjct: 232 YGFTVGQRKGLHIDRPAPDGRPRYVLSIEPVSNTVTVGPRSALEVTGIVATRPVW---NG 288 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 D + C V++R+ + Q + D V++ + GVA+GQA V Y D+ Sbjct: 289 PADVPHEPLTCTVQLRAHGEVYGCRAQLSGDEVHIALDTPATGVAAGQAAVLYLGDT--- 345 Query: 376 RVLGGGIISGS 386 V+G I+ + Sbjct: 346 -VIGSATIATA 355 >gi|205822033|sp|A4X484|MNMA_SALTO RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 360 Score = 372 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 147/371 (39%), Positives = 202/371 (54%), Gaps = 22/371 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRV 79 RV+ AMSGGVDS+V AA G+DV GV L L + + + R G CC +D DARR Sbjct: 5 RVLAAMSGGVDSAVAAARAAEAGHDVTGVHLALARNPQ-TYRTGARGCCTLEDSRDARRA 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D +++ YV+D +RF+ V+ F + YAAG TP PC+ CN +KF+ +L LG D Sbjct: 64 ADVLSIPFYVWDMADRFQADVVDDFVAEYAAGRTPNPCLRCNEKIKFAAVLDRAVALGFD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 + TGH+ R +G DG ++ R +DL +DQSY L T++QL FPLGD K Sbjct: 124 AVVTGHHAR----LGADG----LLRRSVDLAKDQSYVLGVLTREQLSRSMFPLGDSTKTQ 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258 VR A GL +ADK DS DICFV G + R GD+V + G+++GRH G Sbjct: 176 VRAEATRRGLAVADKPDSHDICFVADGDTRGFLARRLGTT--PGDVVDGDTGEVVGRHTG 233 Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 YT+GQRRGL + G P +V+ + ++ V VGP E+L V ++ R W+G Sbjct: 234 AYAYTVGQRRGLHLDRPAPDGRPRYVLSITPKTNTVTVGPAEALAVSQVQARRPVWIGG- 292 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 D +C V++R+ D VP V DDG+ + + GVA+GQA V Y D Sbjct: 293 ---PRPADPVECEVQLRAHGDVVPATVAVTDDGLRAELHQPLRGVAAGQAIVAYRPDPAG 349 Query: 375 ARVLGGGIISG 385 VLG I+ Sbjct: 350 DIVLGSATIAA 360 >gi|220913201|ref|YP_002488510.1| tRNA-specific 2-thiouridylase MnmA [Arthrobacter chlorophenolicus A6] gi|219860079|gb|ACL40421.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arthrobacter chlorophenolicus A6] Length = 372 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 138/382 (36%), Positives = 187/382 (48%), Gaps = 26/382 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84 MSGGVDS+V AA G+DV+GV L L + + R GS CC +D DA R CD + Sbjct: 1 MSGGVDSAVAAARAVEAGHDVVGVHLAL-SRMPGTLRTGSRGCCTIEDSRDAWRACDVLG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + +YV+D+ ERF+ V+ F YAAG TP PC+ CN +KF+ LL LG D + TG Sbjct: 60 IPYYVWDFSERFKEDVVQDFIDEYAAGRTPNPCMRCNERIKFAALLEKAIALGFDAVCTG 119 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDL 203 HY + V +D R + R D +DQSY L T +QL FPL D K VR Sbjct: 120 HYAK----VIEDSHGNRELHRAADWAKDQSYVLGVLTHEQLKHSMFPLADTPSKAEVRAE 175 Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263 A GL +A+K DS DICF+ G + GDIV G +G H G +T Sbjct: 176 AERRGLSVANKPDSHDICFIPDGDTAGWLAEKIDMST--GDIVDETGAKVGEHPGANAFT 233 Query: 264 IGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +GQRRGL + G+P FV+ + ++V+VGP L + I +++W G + E Sbjct: 234 VGQRRGLKLGRPAADGKPRFVLEIRPKENKVVVGPEALLAIDEIQGIKVSWAGLPIEEVD 293 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDD--------GVYVDFEKSEVGVASGQACVFYTSD 371 F C ++R+ DPVP + D + V GVA GQ V Y Sbjct: 294 TGAEFDCHAQVRAHGDPVPAHARMEADPDSADAPARLVVTLTDPLRGVAPGQTVVLYQG- 352 Query: 372 SNEARVLGGGIISGSKRSDAVE 393 +RVLG I ++ Sbjct: 353 ---SRVLGQATIDAARSLQRAA 371 >gi|158521761|ref|YP_001529631.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfococcus oleovorans Hxd3] gi|205816872|sp|A9A0S9|MNMA_DESOH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|158510587|gb|ABW67554.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfococcus oleovorans Hxd3] Length = 358 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 124/380 (32%), Positives = 188/380 (49%), Gaps = 28/380 (7%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 LN L+ + + + V +SGG+DS V A LLK+ G DV + + R G Sbjct: 5 NPLNPWPLESS--NPLIAVLVSGGIDSLVAAHLLKQSGADVTAIH--FLTGYEPEDRAGR 60 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 ++ +++ ++FD F++ V+ F ++Y GETP PC+ CN +KF Sbjct: 61 L---------EKLFTQMDIPVFIFDCRTVFQSNVVDYFTAAYLRGETPNPCMVCNSRIKF 111 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 + R LGAD +ATGHY R+ DG R + + D ++QSYFL +Q QL Sbjct: 112 GACMDYARSLGADAVATGHYCRTT--KDPDGVR---LWKGADPAKEQSYFLAFLSQDQLG 166 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 RFPL M K+ VR A GL + +SQD+CF++ + D ++ I G I Sbjct: 167 RARFPLERMTKDQVRAHAARHGLVPIESKESQDVCFIRGEECADFIEAQVPAIPGPGPIE 226 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 + G+++G H+G+ +T+GQRRG+ +P +V LD + + VG R+ L V + Sbjct: 227 DMTGRLIGTHSGLHRFTVGQRRGINCPAEQPYYVAALDMARNCLKVGFRQDLFVPVCRVA 286 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365 ++NW+ D VKIR +Q VP + + V+F + VA GQ Sbjct: 287 QVNWI-----PDRPKGSMNVSVKIRYNQTEVPARLTALGETDAVVEFVTPQFAVAPGQGA 341 Query: 366 VFYTSDSNEARVLGGGIISG 385 VFY D+ VLGGGII Sbjct: 342 VFYDGDA----VLGGGIIRA 357 >gi|215431975|ref|ZP_03429894.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium tuberculosis EAS054] gi|289755139|ref|ZP_06514517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU [Mycobacterium tuberculosis EAS054] gi|308375963|ref|ZP_07445668.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu007] gi|308377199|ref|ZP_07441475.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu008] gi|289695726|gb|EFD63155.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase TrmU [Mycobacterium tuberculosis EAS054] gi|308344583|gb|EFP33434.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu007] gi|308348530|gb|EFP37381.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis SUMu008] Length = 361 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 136/366 (37%), Positives = 191/366 (52%), Gaps = 22/366 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84 MSGGVDSSV AA + G++V+GV + L ++ + R GS CC+ +D DARRV D + Sbjct: 1 MSGGVDSSVAAARMVDAGHEVVGVHMAL-STAPGTLRTGSRGCCSKEDAADARRVADVLG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV+D+ E+F+ VI F SSYA GETP PCV CN+ +KF+ L + LG D +ATG Sbjct: 60 IPFYVWDFAEKFKEDVINDFVSSYARGETPNPCVRCNQQIKFAALSARAVALGFDTVATG 119 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY R + R +D ++DQSY L T QQL FP+GD K +R A Sbjct: 120 HYARLS---------GGRLRRAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKRQIRAEA 170 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI 264 GL +A+K DS DICF+ G + G +V +G +L H+G+ +TI Sbjct: 171 ARRGLAVANKPDSHDICFIPSGNTKAFLGERIG--VRRGVVVDADGVVLASHDGVHGFTI 228 Query: 265 GQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 GQRRGLG+A G P +V +D +++ V VG L+V + R + A Sbjct: 229 GQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTAGA----AP 284 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 C V++R+ + V + D ++V GVA GQ V Y D VLG Sbjct: 285 SGPVDCVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQTLVLYRPDPAGDEVLGS 344 Query: 381 GIISGS 386 I+G+ Sbjct: 345 ATIAGA 350 >gi|307299195|ref|ZP_07578996.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermotogales bacterium mesG1.Ag.4.2] gi|306914991|gb|EFN45377.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermotogales bacterium mesG1.Ag.4.2] Length = 357 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 125/366 (34%), Positives = 183/366 (50%), Gaps = 26/366 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +M++ +A+SGGVDS+V AA L R G DVIG + + + + Sbjct: 6 EMKIGIALSGGVDSAVAAARLIRQGNDVIGYHMIVLEGNPLANAAADDAKAVADH----- 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + + D E FR ++ F +SY +GETP PCV CN ++KF LL G + Sbjct: 61 ---LGIELKIVDLREEFR-RILNYFTTSYMSGETPNPCVVCNDSIKFGLLLERMFSFGEE 116 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + + R +D +DQSYFL + +L D+ FPLG+M KE Sbjct: 117 KIATGHYARLVSLDEN-----VFLARALDRAKDQSYFLSRIGKHKLHDILFPLGEMTKEE 171 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A + L + K DSQ+ICF+ G Y +K G I +G +LGRH G+ Sbjct: 172 VRQEASGIDLPVHSKKDSQEICFIPDGDYRSFLKS-RGIEGNPGPITDESGILLGRHTGL 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YTIGQR+G+G + + +V LD ++++I+ R+SL + ++ NW D Sbjct: 231 SGYTIGQRKGIGFSGRDRYYVKRLDLKNNKLILAQRQSLMSEALVAKDPNWYID------ 284 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 + F C KIRSS PV V + + + VDF++ V GQ VFY D V+ Sbjct: 285 PGEEFDCLCKIRSSMKPVSAKVTIVSGEKIRVDFQEKVWAVTPGQLAVFYIDD----LVV 340 Query: 379 GGGIIS 384 G I Sbjct: 341 GSAFIE 346 >gi|293977825|ref|YP_003543255.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Sulcia muelleri DMIN] gi|292667756|gb|ADE35391.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Sulcia muelleri DMIN] Length = 380 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 123/394 (31%), Positives = 198/394 (50%), Gaps = 47/394 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RV+V MSGGVDSSV A LLK+ GYDVIG+ ++ YN C +D DA V Sbjct: 4 KRVIVGMSGGVDSSVAALLLKKQGYDVIGIFMKYYNFDN------KCPWREDSIDAMLVS 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 ++ + Y+ D + ++N +I Y G TP P + CN +KF L + L +D Sbjct: 58 QSLKIPFYIIDITKNYKNLIIDYLYKEYKKGYTPNPDIICNSKIKFKFFLEKSIFLKSDF 117 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + + ++GK + +D +DQSYFL + Q+ FPLG + K+ V Sbjct: 118 IATGHYVRKK-EINENGKISYKIISGIDSNKDQSYFLCKLNKVQIKKSIFPLGWLNKKEV 176 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN----------- 249 R++A + L A+K DSQ ICF+ + K+ + +K+ A +G I+ +N Sbjct: 177 REIANKYNLINANKKDSQGICFIGKIKFLNFLKKKLAE--KKGIIIEINKNSHIFKYKQN 234 Query: 250 -------------GQILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVG-- 293 G+I+G H G +T GQR+GL + + PLFV+ D + + VG Sbjct: 235 KLFYKKIEYKKEYGKIIGHHIGAHYFTKGQRKGLKIGGYKYPLFVIEKDITKNILYVGMG 294 Query: 294 -PRESLEVHRIYLR--EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYV 350 L I ++ I+W + + + + +IR Q+ + + ++ +YV Sbjct: 295 KNHPGLYTKVICIKKYNIHW----INKKKIKTKIEVECRIRYRQNFKKATLYKKNNDLYV 350 Query: 351 DFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 +FE ++ V GQ V+Y ++ V+G G+IS Sbjct: 351 EFEIPQLAVNGGQFIVWYINN----EVIGSGLIS 380 >gi|296140603|ref|YP_003647846.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Tsukamurella paurometabola DSM 20162] gi|296028737|gb|ADG79507.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Tsukamurella paurometabola DSM 20162] Length = 365 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 143/379 (37%), Positives = 195/379 (51%), Gaps = 24/379 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV+GV L L + + R GS CC+ +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVEAGHDVVGVHLAL-SEAPGTLRTGSRGCCSKEDAGDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ +RFR VI F ++YAAGETP PC+ CN +KFS L LG Sbjct: 60 AADVLGIPFYVWDFADRFREDVIDDFVAAYAAGETPNPCLRCNEKIKFSALAERAYALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R + + R +D ++DQSY L T +QL FP+GD K Sbjct: 120 DAVATGHYARL---------QGGELRRAVDPDKDQSYVLAVLTAEQLSRAMFPVGDTPKP 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHN 257 +R+ A GL +ADK DS DICF+ G + G +V G+ LG H Sbjct: 171 LIREEAARRGLAVADKPDSHDICFIPSGDTQAFLGARIG--VRPGAVVDAATGERLGEHG 228 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+ +TIGQR+GLG+ G P +V +D S V VG E L+V RI W Sbjct: 229 GVHEFTIGQRKGLGLPGPGPDGAPRYVTAIDAASGEVRVGRGEQLDVTRIVADGAVWTSG 288 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + + V++R+ PV + D + +D + GVA GQA V Y D + Sbjct: 289 SV----PTQPIEAMVQVRAHGGLAPVTARAEGDRIVMDLAEPLRGVAPGQAAVLYAPDQD 344 Query: 374 -EARVLGGGIISGSKRSDA 391 V+G G I + + A Sbjct: 345 RGDLVVGSGTIRSTAHATA 363 >gi|254459090|ref|ZP_05072513.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacterales bacterium GD 1] gi|207084361|gb|EDZ61650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacterales bacterium GD 1] Length = 343 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 129/371 (34%), Positives = 201/371 (54%), Gaps = 33/371 (8%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 K+ +V+V MSGGVDS+V A LLK+DGYDV G+ ++L++ + A+ Sbjct: 2 KKNKKVLVGMSGGVDSTVSALLLKKDGYDVEGLYMKLHSKP--------GYHEVHLSRAQ 53 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + D + + +V D +E F V PF +YA G+TP PC CNR +KF +++ +G Sbjct: 54 KAADFVGMKLHVLDLQETFNEKVFQPFIDTYAEGKTPNPCALCNRNLKFGEMVKFADLIG 113 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 AD +ATGHYI++ DGK D +DQSYFLF + L L FPLG K Sbjct: 114 ADYVATGHYIKT------DGKYFYQ---AADDTKDQSYFLFYVQKNVLPKLIFPLGSRHK 164 Query: 198 ESVRDLAREM-GLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 +++ A + GL+ A + +S +ICFV+ Y D++K + G+++ +G ++G Sbjct: 165 NDIKEFAASIKGLESFASQGESSEICFVETT-YTDLLKDYV-NVDNSGEVLDRDGNVVGE 222 Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H G ++YTIG+R+G V EP +V+ +D ++++ VG +E L + + + +N D Sbjct: 223 HKGYMHYTIGKRKGFTVKGAHEPHYVLSIDAKNNQITVGKKEELACNNVTIEHLNMFNDS 282 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 D F VK+R VP V+ ++ V ++S GVA+GQA VFY D Sbjct: 283 -------DEFDTTVKLRYRTIAVPCHVKIENNKATVTLKESVYGVATGQAAVFYDDD--- 332 Query: 375 ARVLGGGIISG 385 R++GGG I Sbjct: 333 -RLIGGGWICA 342 >gi|299752841|ref|XP_001832878.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coprinopsis cinerea okayama7#130] gi|298410025|gb|EAU88908.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Coprinopsis cinerea okayama7#130] Length = 369 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 118/376 (31%), Positives = 178/376 (47%), Gaps = 25/376 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LL + YD+ V ++ +++R S C +D D +RVC +++ Sbjct: 1 MSGGVDSSVAALLLAQQDYDLSAVFMRNWDTRDESGSDRGCEWEKDWEDVQRVCKKLDIP 60 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC------NRTVKFSDLLSVT--RQLG- 137 + D + N V P + G TP V C NR +KF LL G Sbjct: 61 CSMIDLSREYWNRVFEPSLQQWELGTTPNADVWCNRKAEDNREIKFGALLERLPPDSSGQ 120 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 ATGHY R G + R + RP D +DQ+Y+L + ++ L FP+ ++K Sbjct: 121 RPWFATGHYARKTWSEGPNA--RPKLVRPADGHKDQTYYLSSISESGLQRALFPINHLQK 178 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQG-KYFDVVK-RINAGIALEGDIVHL-NGQILG 254 VR+LA++ L A + DS ICFV + K+ + + N A +G I+ G++LG Sbjct: 179 PQVRELAQKHDLHNAQRPDSVGICFVGEKAKFHNFLSCPANYIPAQKGLIIDETTGKVLG 238 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +H G+ NYTIG+ L M + V D +++ + ESL + I + E W+ Sbjct: 239 KHQGLWNYTIGEGSRL-PGMPTRMAVSRKDPSTNTIY---HESLYTNVINVPEFTWIWSD 294 Query: 315 LFEDAV--VDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 + +GF+ V R VP V+R + GV V + E V GQ V Y+ D Sbjct: 295 SVPTELDTPEGFRASVMHRYRMKAVPCTVRRSSGQGVTVQCDDLEQAVTPGQVAVLYSDD 354 Query: 372 SNEARVLGGGIISGSK 387 LG G+I+ S+ Sbjct: 355 ----WCLGCGVIASSE 366 >gi|302812430|ref|XP_002987902.1| hypothetical protein SELMODRAFT_44690 [Selaginella moellendorffii] gi|300144291|gb|EFJ10976.1| hypothetical protein SELMODRAFT_44690 [Selaginella moellendorffii] Length = 375 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 116/371 (31%), Positives = 171/371 (46%), Gaps = 18/371 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV V +SGGVDSSV LL G+ ++++ SC +D+ A+ VCD Sbjct: 2 RVAVLVSGGVDSSVALRLLCGAGHSCTAFYIKIWFQEDFQNFWSSCPWEEDLKYAQDVCD 61 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + V + + + N V+ + AG TP P + CN VKF L + D + Sbjct: 62 EVGVKLEIVHLTDVYWNKVVSKCITEVRAGRTPNPDIMCNTVVKFGAFLDHIDRTKFDRV 121 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 A+GHY R YV + G R + D +DQ+YFL +Q+QL L FPLG + K VR Sbjct: 122 ASGHYARVERYVDEQGTIRARLMLSKDEVKDQTYFLSQLSQEQLGFLMFPLGSLAKPEVR 181 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG-DIVHLNGQILGRHNGII 260 LA + L D+ DSQ ICF+ + K+ D + R EG I G+ +G+H G Sbjct: 182 QLAHSLNLPNKDRKDSQGICFLGKVKFSDFISRHLGE--KEGLLIEAETGKTMGKHKGFW 239 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE---SLEVHRIYLREINWLGDGLFE 317 YTIGQRRG+ ++ G P +VV D + V + + Y+ ++W Sbjct: 240 FYTIGQRRGISLSHG-PWYVVAKDSEKNLVYISRHYFSGDKKRRNFYVDNLSWFSTIPD- 297 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFV--QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 KC K+R + +R G V S+ +A+GQ FY ++ Sbjct: 298 --PSCPIKC--KVRHGPSFHDCELEFEREKQGARVKLLHSDQALAAGQYAAFYAGET--- 350 Query: 376 RVLGGGIISGS 386 LG G+I+ S Sbjct: 351 -CLGSGMITES 360 >gi|257054918|ref|YP_003132750.1| tRNA-specific 2-thiouridylase MnmA [Saccharomonospora viridis DSM 43017] gi|256584790|gb|ACU95923.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Saccharomonospora viridis DSM 43017] Length = 363 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 144/374 (38%), Positives = 193/374 (51%), Gaps = 20/374 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV+GV L L +++ + R GS CC+ +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVDAGHDVVGVHLAL-SAKPGTLRTGSRGCCSLEDSNDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ ERF V+ F YAAG TP PCV CN +KF LL LG Sbjct: 60 AADILGIPFYVWDFAERFTEEVVETFIGEYAAGRTPNPCVTCNEKIKFEALLEKAVALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGHY R + G + R D +DQSY L + +QL FPLGD +K Sbjct: 120 DAVCTGHYARLSVVDG-----VPELRRSADESKDQSYVLASLKPEQLRHAMFPLGDSRKP 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHN 257 VR A E GL +A K DS DICF+ G +++ GD+V G +LGRH Sbjct: 175 EVRAEAAERGLPVARKPDSHDICFIPDGDTKAFLEKRLGQ--RPGDLVDAETGAVLGRHT 232 Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+ +TIGQR+GLG+ G+P +V+ L+ S V VG + L V+RI W Sbjct: 233 GVHGFTIGQRKGLGIDAPAPDGKPRYVLALEPVSGTVKVGSGDKLAVNRIEGERPIW--- 289 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD-S 372 E + +C ++R+ P + DD V V + GVA GQ V Y D Sbjct: 290 -PSERPLAGPTECVAQVRAHGGTAPAVAEVVDDRVVVHLREPLRGVAPGQVVVLYREDAE 348 Query: 373 NEARVLGGGIISGS 386 VLG I+ + Sbjct: 349 AGDVVLGSAKIAAT 362 >gi|19552461|ref|NP_600463.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium glutamicum ATCC 13032] gi|62390127|ref|YP_225529.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium glutamicum ATCC 13032] gi|145295379|ref|YP_001138200.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium glutamicum R] gi|24638303|sp|Q8NR24|MNMA_CORGL RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|166234850|sp|A4QDK1|MNMA_CORGB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|21324007|dbj|BAB98633.1| Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Corynebacterium glutamicum ATCC 13032] gi|41325463|emb|CAF19943.1| TRNA-METHYLTRANSFERASE [Corynebacterium glutamicum ATCC 13032] gi|140845299|dbj|BAF54298.1| hypothetical protein [Corynebacterium glutamicum R] Length = 365 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 135/375 (36%), Positives = 196/375 (52%), Gaps = 19/375 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79 MRV+ AMSGGVDS+V A+ G++V+GV L L + + CC+ +D DARRV Sbjct: 1 MRVLAAMSGGVDSAVAASRAVAAGHEVVGVHLALSQDPQTVRESSRGCCSLEDSADARRV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + + YV+D+ +RF+ VI F SYA GETP PC+ CN +KF+ LL LG D Sbjct: 61 CDKLGIPFYVWDFSDRFKEDVIDNFIDSYAIGETPNPCLRCNEKIKFAALLERGIALGFD 120 Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + TGHY R ++ G DG + R +D +DQSY L ++ FP+GD K Sbjct: 121 AVVTGHYARLTQPADGGDG----YLRRGVDPNKDQSYVLGVLGAHEIEHCMFPVGDTIKP 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R+ A G +A K DS DICF+ G + + G IV G L H G Sbjct: 177 EIREEASAAGFSVAKKPDSYDICFIPDGNTQAFLGKHIG--MRPGMIVDQEGTQLREHAG 234 Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 + +TIGQR+GL + A G P +V +D + V VG RE+L++ I+ + +L Sbjct: 235 VHEFTIGQRKGLDIKAPAADGRPRYVTDIDAKTGTVTVGTRENLKISTIHADRLKFLH-- 292 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPV--FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 A+ C V++R+ V + R+ D + ++ + GVA GQA V Y D+ Sbjct: 293 ---PAMDGQIDCEVQVRAHGGVVSCSATIDRDADFMVLNLNEPLQGVARGQAAVLYLPDA 349 Query: 373 NEARVLGGGIISGSK 387 + VLG G I ++ Sbjct: 350 DGDIVLGSGTICHTE 364 >gi|299117474|emb|CBN73977.1| conserved unknown protein [Ectocarpus siliculosus] Length = 491 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 120/438 (27%), Positives = 182/438 (41%), Gaps = 79/438 (18%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 RVVV MSGGVDSSVVA LL + GY+V+GV ++ ++ + + C A D+ DARRV Sbjct: 35 KQRVVVGMSGGVDSSVVAMLLHQQGYEVVGVFMRNWDEQDET-GSDVCAADTDLEDARRV 93 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGA 138 + + D+ + N V P TP V CNR +KF ++ A Sbjct: 94 GYHLGIPVKTVDFSREYWNEVFEPSLQELDRCRTPNMDVACNRFIKFDAFREHALGRMSA 153 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R+ G D R ++ + D +DQ+YFL + L + FPLG + K Sbjct: 154 DFVATGHYARTAPGPGGDWS-RPVLRQAEDGNKDQTYFLSGVPSEGLAKVLFPLGGLTKP 212 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGK-YFDVVKRINAGIALEGDIVHLN-GQILGRH 256 VR LA E GL +A K +S +CFV + + + + + G+ V ++ G+++GRH Sbjct: 213 EVRRLAEEGGLPVARKRESMGVCFVGKRRSWASFISQYL--TPSPGNFVCVDTGEVVGRH 270 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRI--YLREINWL 311 G+ YT+GQ+ L M E +V LD +S+ V V SL + + +W+ Sbjct: 271 GGVQLYTVGQKSHL-DGMPEKYYVAGLDSDSNSVYVARGADNPSLFARGLSVLASKFSWV 329 Query: 312 GDGLFE----------------------------------------------------DA 319 + Sbjct: 330 AGCPPPELLSGSGSHPSAPSRREATKAGGGPAGVEAPVPTKERQPAAPGGEPIDAGEMEG 389 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDG----------VYVDFEKSEVGVASGQACVFYT 369 +C + R Q +P V+ G V+V F++ +A GQ Y Sbjct: 390 PPPVLRCEYRSRHRQALLPCGVELLGGGGSGASVPRPVVHVRFDEPAKAIAPGQVVALYK 449 Query: 370 SDSNEARVLGGGIISGSK 387 E LGGG I ++ Sbjct: 450 ----EGICLGGGPILRAE 463 >gi|326330731|ref|ZP_08197035.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nocardioidaceae bacterium Broad-1] gi|325951572|gb|EGD43608.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nocardioidaceae bacterium Broad-1] Length = 374 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 150/383 (39%), Positives = 190/383 (49%), Gaps = 28/383 (7%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDAR 77 MRVV AMSGGVDS+V AA K G+DV GV L L + AS R G CC +D DAR Sbjct: 2 GMRVVAAMSGGVDSAVAAARAKEAGHDVTGVHLAL-SRNPASYRSGARGCCTIEDANDAR 60 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 R D I + YV+D +RF V+ F S YA G TP PC+ CN +KF+ +L LG Sbjct: 61 RAADVIGIPFYVWDLSDRFHEDVVEDFMSEYAEGRTPNPCLRCNEKIKFAAVLDRALALG 120 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D +ATGHY R +D + R +D +DQSY L Q QL FPLGD K Sbjct: 121 FDAVATGHYATLR----EDADGLVELHRAVDGGKDQSYVLGVLDQDQLRHSLFPLGDTPK 176 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDIVHLNGQILGR 255 VR+ A GL +ADK DS DICFV G ++ A G IV G++LG Sbjct: 177 PLVREEAARRGLLVADKPDSHDICFVADGDNAGWLREKLGDRAPNESGPIVDETGEVLGE 236 Query: 256 HNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 H G YTIGQR+GL + G+P FV+ ++ S V VGPRE L V + W Sbjct: 237 HQGTYAYTIGQRKGLRLGKPAPDGKPRFVLDIEPVSGTVTVGPREHLAVDGLSGIRPRWA 296 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR------NDDGVYVDFEKSEVGVASGQAC 365 G A + V++R+ D V D V ++ G+A GQA Sbjct: 297 G-----RAPEGVLEGTVQLRAHGDEHRARVTVVPTGSTTDAEVEIELLDPAYGIAPGQAA 351 Query: 366 VFYTSDSNEARVLGGGIISGSKR 388 V Y RV+G IS ++R Sbjct: 352 VIYDG----TRVVGSATISTTRR 370 >gi|260904921|ref|ZP_05913243.1| tRNA-specific 2-thiouridylase MnmA [Brevibacterium linens BL2] Length = 397 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 146/404 (36%), Positives = 191/404 (47%), Gaps = 46/404 (11%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+++VAMSGGVDSSV AA G++V+GV L L + + R GS CC +D DA R Sbjct: 1 MKILVAMSGGVDSSVAAARAVDAGHEVVGVHLAL-SRMPGTLRTGSRGCCTIEDSRDAHR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V +++ YV+D+ ERF+ ++ F + YAAG TP PC+ CN +KF+ LL LG Sbjct: 60 VAGMLDIPFYVWDFSERFKEDIVDDFIAEYAAGRTPNPCMRCNERIKFAALLDRALALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197 D +ATGHY V D + R DL +DQSY L + QL FP+G K Sbjct: 120 DAIATGHYA----EVLRDDNGLPELHRGEDLAKDQSYVLGVLSGDQLEHCYFPIGATASK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR A E G +A+K DS DICF+ G + G I G+ LG H+ Sbjct: 176 AEVRAEAAERGFSVANKPDSYDICFIPDGDTKAWLADKIP--MRPGLIKDAEGETLGEHD 233 Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G + YTIGQR+GLG+ A G+P FV LD S+ V VG R L V + W G Sbjct: 234 GAMTYTIGQRKGLGIQKPAADGQPRFVTGLDPASNTVTVGSRSDLAVSHLTGIRTTWAGP 293 Query: 314 GLFE--DAVVDGFKCFVKIRSSQDPVPVFVQRND--------------DGVYV------- 350 + C V+IR+ DPVP D D V V Sbjct: 294 APTDIGSEPATAIDCEVQIRAHSDPVPARAWLGDYISEAPEHEVNPIVDEVEVPAARPAG 353 Query: 351 -----DFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRS 389 D ++ GVA GQ V Y RVLG I + + Sbjct: 354 QLMHIDVDEELSGVAPGQTMVIYRG----TRVLGQATIDVTAKD 393 >gi|189461693|ref|ZP_03010478.1| hypothetical protein BACCOP_02357 [Bacteroides coprocola DSM 17136] gi|189431580|gb|EDV00565.1| hypothetical protein BACCOP_02357 [Bacteroides coprocola DSM 17136] Length = 353 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 119/372 (31%), Positives = 184/372 (49%), Gaps = 26/372 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ +V++ MSGG DSSV A LL+ GY+V GVT + Y ++ + DAR Sbjct: 3 ENNKVLLGMSGGTDSSVAALLLQDAGYEVTGVTFRFYEKDNNTEY---------LDDARE 53 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 +C+ +++SH +D FR +I F + Y G TP+PC CN +K+ L + + G Sbjct: 54 LCERLHISHITYDARNEFRERIISYFINEYMTGRTPVPCTLCNNYLKWPLLKKLADEKGI 113 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 ATGHY++ R G + D+++DQS+FL+ Q L + P+G + K Sbjct: 114 YHFATGHYVQKRNIDG-----YWHITTGTDVDKDQSFFLWGLPQDILQRMLLPMGKLTKN 168 Query: 199 SVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRI-NAGIALEGDIVHLNGQILGRH 256 VR++A E G L A K DS +CF Y +K + + G+ +G LG+H Sbjct: 169 KVREIAAERGFLKAAHKRDSLGVCFCPM-DYRSFLKEHVKKELIMPGNFYDESGNCLGKH 227 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE-SLEVHRIYLREINWLGDGL 315 G YTIGQRRGLG+ + + LFV + ++ +I+ + SL +YL + + Sbjct: 228 EGYPFYTIGQRRGLGIYLNKALFVKQIIPQTNSIILSDQLCSLGQTEMYLTDWHVTNPSA 287 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374 + + VKIR + V DG +++ + +A+GQA FY D Sbjct: 288 LFETTDE---IIVKIRYRKQANRCTVIPTPDGQLHIKLHEPLTSIAAGQAAAFYRDDV-- 342 Query: 375 ARVLGGGIISGS 386 VLGGGII S Sbjct: 343 --VLGGGIICSS 352 >gi|119717667|ref|YP_924632.1| tRNA-specific 2-thiouridylase MnmA [Nocardioides sp. JS614] gi|205816899|sp|A1SMB0|MNMA_NOCSJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|119538328|gb|ABL82945.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nocardioides sp. JS614] Length = 366 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 152/380 (40%), Positives = 198/380 (52%), Gaps = 24/380 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV G+ L L + S R G CC +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAAEAGHDVTGIHLAL-SRNPQSYRSGARGCCTIEDSNDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D I + YV+D +RF V+ F + YAAG TP PC+ CN +KF+ +L LG Sbjct: 60 AADVIGIPFYVWDLSDRFHEDVVEDFMAEYAAGRTPNPCLRCNEKIKFAAVLDRALGLGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R L G DG M R +D +DQSY L Q QL FPLG K+ Sbjct: 120 DAVATGHYAR--LVAGADG--LVEMHRAVDHGKDQSYVLGVLDQGQLRHSLFPLGGSTKD 175 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIAL--EGDIVHLN-GQILGR 255 VR A E GL +ADK DS DICF+ G ++ A EG IV + G++LGR Sbjct: 176 EVRREAAERGLLVADKPDSHDICFIADGDNAGWLREKLGDRAPHHEGTIVDDDTGEVLGR 235 Query: 256 HNGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWL 311 H G +TIGQR+GL + G P FV+ ++ S V VGP E L VHR+ W Sbjct: 236 HEGSYGFTIGQRKGLRIGRPAPDGRPRFVLDIEPVSGTVTVGPHERLAVHRLRGIRPRWC 295 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 G V D V++R+ + + R+ D V ++ + G+A GQA V Y Sbjct: 296 G------TVPDRLSGTVQLRAHGEEHRAVLVRDGDEVDIELLEPAYGIAPGQAAVLYDG- 348 Query: 372 SNEARVLGGGIISGSKRSDA 391 +RV+G IS + R A Sbjct: 349 ---SRVVGSATISATDRVAA 365 >gi|281355523|ref|ZP_06242017.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Victivallis vadensis ATCC BAA-548] gi|281318403|gb|EFB02423.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Victivallis vadensis ATCC BAA-548] Length = 358 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 129/365 (35%), Positives = 185/365 (50%), Gaps = 17/365 (4%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+VA+SGGVDSSV A L ++ G +VIGVTL+L + C + D +C Sbjct: 4 KVIVALSGGVDSSVAAVLAQQAGCEVIGVTLRLKHPDPEFSAAQLCASKNDEAAVESICA 63 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H+ + F V+ P A YA G TP PC +CN +KF L+ R +GA + Sbjct: 64 KLGIEHHYLELFPEFECKVLRPAAQEYARGRTPNPCCECNYRIKFGKLVEFARSVGAAKV 123 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 TGHY + + G + R DL++DQSYFL+ Q L +RFP+G M K VR Sbjct: 124 LTGHYAKLSEHGG-----VYELRRGDDLKKDQSYFLYRLDQAILSMVRFPVGAMDKGEVR 178 Query: 202 DLAREMGLDIADKSDSQDICF-VQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 +A E GL +DK DSQD CF V + + ++R+ G + G+I+GRHNG+ Sbjct: 179 RIAAEYGLVTSDKPDSQDACFQVPGESFGETLRRLEKLPRRPGLFRY-QGRIVGRHNGVH 237 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRES-LEVHRIYLREINWLGDGLFEDA 319 +TIGQR+GL VA+G P +V +D S + + L R + ++W A Sbjct: 238 EFTIGQRKGLNVALGVPAYVAGIDPESGDIRLETEPERLLASRFTVERVSWQSGR----A 293 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEK-SEVGVASGQACVFYTSDSNEARVL 378 + V+IR VP V+ + G F + V GQA VFY D +L Sbjct: 294 PDLSGELEVQIRYRSRAVPCRVEPDGAGGAAVFPAIPQRAVTPGQAAVFYRGD----LLL 349 Query: 379 GGGII 383 GGG+I Sbjct: 350 GGGVI 354 >gi|195952741|ref|YP_002121031.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Hydrogenobaculum sp. Y04AAS1] gi|226704772|sp|B4U7E2|MNMA_HYDS0 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|195932353|gb|ACG57053.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Hydrogenobaculum sp. Y04AAS1] Length = 342 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 144/367 (39%), Positives = 204/367 (55%), Gaps = 28/367 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + V MSGGVDSSV A LLK G+DVIGVTL+ Y + CC+ +DV DAR VC Sbjct: 1 MIIAVGMSGGVDSSVAAYLLKEQGHDVIGVTLRFYKEECKENAR-VCCSPKDVQDARIVC 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL-GAD 139 D + + H D+E F+ VI F SY G TP PC CN+ VK + L +Q D Sbjct: 60 DMLGIPHITLDWENLFKERVIDYFIKSYKTGLTPNPCAICNKDVKTAFLGFYLKQTADID 119 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 LATGHY + ++GK + R + +DQSYF+ +Q L L FP+G M K+ Sbjct: 120 FLATGHY-----VIKEEGK----IKRAKE--KDQSYFMALVPKQSLDYLMFPVGYMTKQE 168 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258 +RD+A+++ L +A+K +SQD+CF++ D + + +GDIVH+ + LG+H G Sbjct: 169 IRDIAKKINLPVANKIESQDVCFLKGMDLEDYLSQFIDMT--QGDIVHIATQKTLGKHKG 226 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 I YTIGQR GLGV+ +PL+VV D + + VG +E L I L++ N ED Sbjct: 227 IHRYTIGQRHGLGVSYHKPLYVVEKDIEKNILYVGEKEYLLKDAITLKDYN-----KLED 281 Query: 319 AVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 D +++IR + P+P+ ++ N D V + ++ VA GQ Y D + Sbjct: 282 FEKDNM--YIQIRYNSKPIPIKHIEENKDNVIIFLKEPATQVAKGQVGAIYFGDI----L 335 Query: 378 LGGGIIS 384 LGGGIIS Sbjct: 336 LGGGIIS 342 >gi|71003538|ref|XP_756435.1| hypothetical protein UM00288.1 [Ustilago maydis 521] gi|46096040|gb|EAK81273.1| hypothetical protein UM00288.1 [Ustilago maydis 521] Length = 484 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 107/402 (26%), Positives = 173/402 (43%), Gaps = 41/402 (10%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK-------GSCCA 69 K RVVVA+SGGVDSSV AALL + +D+ V ++ +N S R C Sbjct: 81 PQKGERVVVALSGGVDSSVTAALLAQADFDLEAVFMRNWNELDESGRMQPGSGGASGCTW 140 Query: 70 GQDVYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 +D D + VC + + + D + + V P + G TP P V CN+ +KF Sbjct: 141 QRDWQDVQSVCRHLGNIPVKMIDLSKEYWTQVFEPALQDWQQGTTPNPDVSCNKEIKFGA 200 Query: 129 LLSVTRQLGAD-----VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ 183 L+ + G LATGHY D + R ++ R D +DQ+Y+L + + Sbjct: 201 LMDRLIRTGDHGGSKSWLATGHYAHVAWQQQGD-RTRPMLMRAKDRSKDQTYYLSSVGED 259 Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQG-----------KYFDVV 232 +L FPL + K VR+LA++ L A++ +S ICF+ + + Sbjct: 260 KLAHAHFPLAHLLKTQVRELAKKFQLPTAERRESMGICFIGTRGSNGGAVSNTQGFSTFL 319 Query: 233 KRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV 292 + GD+V +G+++ +H G+ T+GQ + A + +V D +++++V Sbjct: 320 NGYIP--SAPGDMVDESGRVVSKHCGLHTLTVGQGARIRGATSK-YYVAKKDIPNNKIVV 376 Query: 293 GP---RESLEVHRIYLREINWLGDGLFEDAVVDG---FKCFVKIRSSQDPVPVFVQR--- 343 L R+Y+R+I W+ + DG ++R Q V R Sbjct: 377 VQGKDHPMLLCTRLYVRDIEWIWREPPPELKYDGVGRVTLLAQVRHRQVESECVVSRFKQ 436 Query: 344 NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385 +G V F + + VA GQ V LG +I Sbjct: 437 GKNGYVVQFTEPVLAVAPGQ--VL--GLWRGNWCLGSAVIES 474 >gi|309363500|emb|CAP26308.2| hypothetical protein CBG_06062 [Caenorhabditis briggsae AF16] Length = 393 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 111/390 (28%), Positives = 188/390 (48%), Gaps = 36/390 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTL----------------QLYNSRKASKRKG 65 RVV+ MSGGVDS+V A LLK+ G+DV+G+ + ++S++ Sbjct: 5 RVVIGMSGGVDSAVSAFLLKQKGFDVVGLHMVTHSRQRESEKKNISQINWDSQEEG--SS 62 Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125 +C +D DAR VC+ +N+ + ++ + + N V + F +Y G T +P +DCN ++K Sbjct: 63 TCPRSKDEADARNVCNRLNIPFHTVNFVKEYWNHVFLKFLENYKIGRTTVPDIDCNYSIK 122 Query: 126 FSDLLSVTRQ-LGADVLATGHYIRSRLYVGDDGKRRR---IMCRPMDLERDQSYFLFATT 181 F V ++ AD +ATGHY + ++ + D +DQ++FL T Sbjct: 123 FDAFHKVAQETFDADFIATGHYATTSFGDFQQNRKHSEAIRLFSGRDPLKDQTFFLCTVT 182 Query: 182 QQQLCDLRFPLGDMKKESVRDLAREMGLD-IADKSDSQDICFVQQGK-YFDVVKRINAGI 239 Q+QL FPLG ++K V+ +A + G + K +S ICF+ + K + D + Sbjct: 183 QEQLKRAMFPLGSLQKSEVKRIAEQQGFHRVVKKPESMGICFIGKKKRFSDFLDEYIE-- 240 Query: 240 ALEGDIVHLNGQILGRHNGIINYTIGQR---RGLGVAMGEPLFVVYLDKNSSRVIVG--- 293 G IV +G+ +G+H+GI +TIG+R + L FV + ++ V+ Sbjct: 241 PKPGRIVLKDGKQIGKHHGIHQFTIGKRIHGKYLNERSHFGFFVSEIRSDTGDVVACNGS 300 Query: 294 PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFE 353 L R + NW+ + + K +I+ + PVP V++++ + V+ + Sbjct: 301 HHSDLYATRFLINRPNWIPSSDPLEEIS-PSKILCRIQRTHPPVPCKVEKSEHYLSVEPK 359 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGII 383 + GQ CVFY + E LGGG I Sbjct: 360 IPLRATSPGQMCVFY---TTENECLGGGEI 386 >gi|307179503|gb|EFN67817.1| Thioredoxin domain-containing protein 4 [Camponotus floridanus] Length = 759 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 100/368 (27%), Positives = 165/368 (44%), Gaps = 42/368 (11%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V V +SGGVDS+V A LLK G++V GV ++ ++ R + G+C +D DAR +CD Sbjct: 5 VAVGISGGVDSAVTALLLKNKGFNVTGVFMKNWDIRDET---GNCTVEKDYEDARWICDK 61 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + D+ + + N V Y G TP P + CN+ +KF+ V Sbjct: 62 LKIPLIQLDFVKEYWNEVFSDLLEKYQTGYTPNPDILCNKNIKFNKFFDVA--------- 112 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 + + D +DQ++FL QQ L FPLG+ K V+ Sbjct: 113 -----------------HVHLLQAYDSNKDQTFFLNQIPQQTLRRCMFPLGNYLKNHVKT 155 Query: 203 LAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGII 260 +A+E L IA K +S ICFV + ++ D + G+ V L+ G +G+HNGI Sbjct: 156 IAKEASLHKIAQKKESMGICFVGKREFQDFISEYIDD--KPGEYVDLDSGLSIGKHNGIH 213 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV---GPRESLEVHRIYLREINWLGDGLFE 317 TIGQR +G +V D+ ++ +I G +L + ++++W+ + E Sbjct: 214 KLTIGQRCRIGGCEN-AYYVFSKDQKTNTIIAVDSGIHPALYTDFLITQDVHWISEEPHE 272 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 C + + + V + +D+ +++ + GQ V Y+ + Sbjct: 273 LRHSGVLSCDFRFQHRNPLITCNVYKISDNRLFIRLSVPLRAITKGQYAVLYSGE----E 328 Query: 377 VLGGGIIS 384 LGG IIS Sbjct: 329 CLGGSIIS 336 >gi|222099125|ref|YP_002533693.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermotoga neapolitana DSM 4359] gi|254811469|sp|B9KBD1|MNMA_THENN RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|221571515|gb|ACM22327.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermotoga neapolitana DSM 4359] Length = 358 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 121/368 (32%), Positives = 183/368 (49%), Gaps = 18/368 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR---KASKRKGSCCAGQDVYDAR 77 M+V VA+SGGVDS+V LL ++G++V ++ K +K CC+ D DA Sbjct: 1 MKVGVALSGGVDSAVALYLLLKEGHEVKAFHMKTKEDEFFLKKEIKKKVCCSPSDTADAI 60 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 R+ ++ V + D E FR VI PF G TP PCV CNR VKF + G Sbjct: 61 RIARSLGVEIEIVDVREVFREKVIEPFKRDLLRGLTPNPCVHCNRYVKFGYFMDYVLSQG 120 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 D A+GHY R ++++ + +D ++DQSYFL ++ L FP G K Sbjct: 121 FDAFASGHYARVEFSGK---YGKKVIKKGVDGKKDQSYFLARIEPWRIEKLLFPNGIYTK 177 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 E +R +A E G+ +A K +SQD+CF+ G + +K ++ EG ++ G+++G H Sbjct: 178 EEIRRIAEEAGIHVAKKQESQDVCFIPDGSIENFLKDEGITLS-EGKVITEKGEVVGHHR 236 Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G YT+GQR+GL + GE L+V S+ V+V E + + + W D Sbjct: 237 GYPLYTVGQRKGLKIEKFGERLYVREKIPESNVVVVSGLEGVFFSGLIAVDPVWHVD--- 293 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + F+C ++R + P V+ + V V FEK V GQ FY D+ Sbjct: 294 ---LPEEFRCVCRVRKKAEEAPAIVRVKNSEVEVRFEKKIFAVTPGQIAAFYDEDT---- 346 Query: 377 VLGGGIIS 384 +LGG II Sbjct: 347 LLGGAIIK 354 >gi|284931128|gb|ADC31066.1| Trifunctional protein RibF/TrmU (FAD synthetase, Riboflavin kinase, tRNA-specific 2-thiouridylase) [Mycoplasma gallisepticum str. F] Length = 657 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 122/400 (30%), Positives = 195/400 (48%), Gaps = 31/400 (7%) Query: 3 VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN------ 56 E + +L + RVVVA+SGGVDS+V A LL++ GYDV+ +Q ++ Sbjct: 269 AIENDKKTALSFFHKQEKPRVVVALSGGVDSAVCAYLLQQQGYDVVAAFMQNWDKDLNFE 328 Query: 57 --SRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETP 114 S A + C A QD DA+++C+ + + Y F++ E++ N V + Y G TP Sbjct: 329 LLSDHADDQIQGCDAKQDYEDAQKLCEQLKIKLYHFNFVEQYWNDVFLKVLEDYKKGLTP 388 Query: 115 LPCVDCNRTVKFSDLLSVTRQ-LGAD-VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERD 172 P V CN+ KF ++ R+ G + +A GHY +L DD + D +D Sbjct: 389 NPDVLCNQFGKFGWFINALRKQFGNNIKIAFGHYA--KLITKDDE---VFLVHTKDHNKD 443 Query: 173 QSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVV 232 Q+YFL ++QL ++ FPL ++ K +VR++A++ L +A+K DS ICF+ + + + Sbjct: 444 QTYFLTMLKKEQLKNIIFPLSELDKPTVREIAKQANLYVANKKDSTGICFIGERNFKQFL 503 Query: 233 KRINAGIALEGDIVHLN-GQILGRHNGIINYTIGQ-RRGLGVAMGEPLFVVYLDKNSSRV 290 +G I+ ++ + +G H+G+ YTIGQ RR E +FV D N++ + Sbjct: 504 SNYL--AIKKGPIILIDENKKIGEHDGLYFYTIGQSRRLHVGGTKEKIFVCNKDYNNNTL 561 Query: 291 IVGPRES----LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRND 345 V S L L NWL D + + K +++ R Q V +D Sbjct: 562 YVCYESSKDQYLSSVSCELENFNWLTDTKDQ---LLNKKLWIRFRHRQKLQECEIVSYHD 618 Query: 346 DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISG 385 D V V + ++GV GQ V Y V+GGG I+ Sbjct: 619 DKVIVKY-TKQIGVTPGQYGVIYD---QNLWVVGGGKITK 654 >gi|218961454|ref|YP_001741229.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Cloacamonas acidaminovorans] gi|167730111|emb|CAO81023.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Cloacamonas acidaminovorans] Length = 382 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 117/355 (32%), Positives = 189/355 (53%), Gaps = 22/355 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR--KGSC---CAGQDV 73 K V V +SGG+DS++ A LL+ GY VIG+T+Q Y+ + K C +++ Sbjct: 3 KKTSVAVGISGGIDSAMTAYLLQESGYRVIGITMQTYDENIEMDKTLKSGCFGPAQEENI 62 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 A + + + HY+ +E FR+ VI F +Y G+TP PC+ CN +KF+ L Sbjct: 63 LSASLLWRKLGIEHYIIPLQEEFRHKVIDYFCETYIKGKTPNPCLVCNAYIKFALLPEKA 122 Query: 134 RQLG--ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 LG D ATGHY + ++ +R + + D +DQSYFL +Q+QL FP Sbjct: 123 HSLGLEFDYFATGHYAKIGF---NNTLKRYQIRKAKDANKDQSYFLAFLSQEQLAQTLFP 179 Query: 192 LGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250 LGD K+ ++ +A G ++ ++ +SQD F+Q + K G+I+ + G Sbjct: 180 LGDYTKQEIKKMAIGKGFTELVERKESQD--FLQSSDLEVLFK---PEDFNPGEIIDMQG 234 Query: 251 QILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN 309 +++G+H GIINYTIGQRR LG+ M EP +V+ +D ++R+++GP+E L + ++N Sbjct: 235 KVIGKHKGIINYTIGQRRNLGISGMPEPYYVLQIDAENNRIVLGPKEYLFKKKCSATDMN 294 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQ 363 W+ E F+ KIR P V ND+ + V F++ ++ + GQ Sbjct: 295 WVSLPAPEKK----FRAKAKIRQQHSPADCIVTPINDNTIEVVFKEPQLSITPGQ 345 >gi|25027890|ref|NP_737944.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium efficiens YS-314] gi|30173439|sp|Q8FQ01|MNMA_COREF RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|23493173|dbj|BAC18144.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium efficiens YS-314] Length = 365 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 140/375 (37%), Positives = 196/375 (52%), Gaps = 19/375 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRV 79 MRV+ AMSGGVDS+V A+ G++V+GV L L ++ + CC+ +D DARRV Sbjct: 1 MRVLAAMSGGVDSAVAASRAVAAGHEVVGVHLALSRDPQSVRESSRGCCSLEDSADARRV 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 CD + + YV+D+ +RF+ VI F SYA GETP PC+ CN +KF+ LL LG D Sbjct: 61 CDKLGIPFYVWDFSDRFKEDVIDDFIDSYAIGETPNPCLRCNEKIKFAALLERGIALGFD 120 Query: 140 VLATGHYIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 + TGHY R ++ G DG + R +D+ +DQSY L ++ FP+GD K Sbjct: 121 AVVTGHYARLTQPADGGDG----YLRRGVDMNKDQSYVLGVLGAHEIAHCMFPVGDTVKP 176 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R+ A G +A K DS DICF+ G + + G IV G L H G Sbjct: 177 EIREEAAASGFSVAKKPDSYDICFIPDGNTQAFLGKHIGL--RPGMIVDREGTTLREHAG 234 Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 + +TIGQR+GL + A G P +V +D + V VG RE LEV I+ + +L Sbjct: 235 VHEFTIGQRKGLDIKEPAADGRPRYVTDIDAATGTVTVGSREDLEVGVIHADRLKFLH-- 292 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPV--FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 A+ C V++R+ V + R D + +D +S GVA GQA V Y D Sbjct: 293 ---PAMDGELDCEVQVRAHGGVVKCHARIDRTADTMRLDLAESLSGVARGQAAVLYLPDP 349 Query: 373 NEARVLGGGIISGSK 387 VLG G I G++ Sbjct: 350 EGDIVLGSGTICGTE 364 >gi|297559139|ref|YP_003678113.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843587|gb|ADH65607.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 362 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 145/378 (38%), Positives = 195/378 (51%), Gaps = 27/378 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRV 79 RV+ AMSGGVDS+V AA + G+DV GV L L + S R G CC +D +DARR Sbjct: 4 RVLAAMSGGVDSAVAAARVAEAGHDVTGVHLAL-SKNPQSYRTGARGCCTVEDSHDARRA 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + YV+D E F V+ F + Y AG TP PC+ CN +KF +L LG D Sbjct: 63 ADVIGIPFYVWDMSEEFDREVVQDFVAEYEAGNTPNPCLRCNEKIKFEAVLDRAVALGFD 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGH++R DG+ + R +D +DQSY L +QL FPLGD K+ Sbjct: 123 AVATGHHVRKV-----DGR----LVRSVDAAKDQSYVLGVLNAEQLERAVFPLGDCTKDE 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A GL +ADK DS DICF+ G + R G I +G ++G HNG Sbjct: 174 VRAEAERRGLSVADKPDSHDICFIADGDTAGFLNRRIGE--RPGPIRDEDGTVVGTHNGS 231 Query: 260 INYTIGQRRGLG-VAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 +T+GQR+GLG P +V+ ++ + V VGPR SL V I W G + Sbjct: 232 HTFTVGQRKGLGLGGAAHPRYVLSIEPVDNSVTVGPRASLRVDAITGVRPVWSG----SE 287 Query: 319 AVVDGFKCFVKIRSSQDPVPVFV-QRNDDG---VYVDFEKSEVGVASGQACVFYTSDSNE 374 + + C V++R+ + P V QR DG + V + GVA+GQA V Y D+ Sbjct: 288 PLTEPTDCHVQLRAHGEVYPASVWQREADGGPELVVRLAEPATGVATGQAVVVYQGDT-- 345 Query: 375 ARVLGGGIISGSKRSDAV 392 VLG IS + R+ A Sbjct: 346 --VLGSATISATSRTGAA 361 >gi|194226979|ref|XP_001488715.2| PREDICTED: similar to tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase 1 [Equus caballus] Length = 527 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 113/401 (28%), Positives = 173/401 (43%), Gaps = 46/401 (11%) Query: 17 NPKDMRVVVAMSGGVD--------SSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 P+ V A+ GG SS A GY V GV ++ ++S G C Sbjct: 101 PPEPGPVSRALKGGGRGAEVSARPSSPSAR--PSRGYQVTGVFMKNWDSLDEH---GVCT 155 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 A +D DA RVC +++ + Y + + N V F + Y G TP P + CN+ +KFS Sbjct: 156 ADKDCEDAYRVCQILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSC 215 Query: 129 LLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRR------------------IMCRPMDL 169 LGAD +ATGHY R+ L + +++ + + D Sbjct: 216 FFRYALDNLGADAVATGHYARTSLEDDEVFQQKHVKRPEGLFRNRFEVRNAVKLLQAADS 275 Query: 170 ERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKY 228 +DQ++FL +Q L FPLG + K+ V+ +A E L + K +S ICFV + + Sbjct: 276 FKDQTFFLSQVSQDALRRTLFPLGGLTKDFVKKIAAENRLHHVLQKKESMGICFVGKRNF 335 Query: 229 FDVVKRINAGIALEGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNS 287 + + + G + + + ++LG H G YT+GQR +G + EP +VV D Sbjct: 336 ENFILQYLQ--PRPGKFISIEDNKVLGTHKGWFLYTLGQRAKIG-GLREPWYVVEKDGAK 392 Query: 288 SRVIVGP---RESLEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQR 343 V V P +L + ++W+ + V D +C + R VP + Sbjct: 393 GDVFVAPQTDHPALYRDLLRTSRVHWIAEEPPATLVRDKMMECHFRFRHQMALVPCVLTL 452 Query: 344 NDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 N DG V+V K + GQ VFY D LG G I Sbjct: 453 NQDGTVWVTAVKPVRALTLGQFAVFYKGD----ECLGSGKI 489 >gi|303232364|ref|ZP_07319057.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Atopobium vaginae PB189-T1-4] gi|302481548|gb|EFL44615.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Atopobium vaginae PB189-T1-4] Length = 392 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 128/405 (31%), Positives = 190/405 (46%), Gaps = 40/405 (9%) Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCC 68 +N PK V + MSGGVDS+ AALLK GY V V ++ ++ +C Sbjct: 1 MNISMPTYAPKGATVYLGMSGGVDSACSAALLKEWGYTVHAVYMRNWSRDLPGF---TCR 57 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 D+ DA RVC T+ ++ V+D E+ +++ V+ +YA G TP P V CN+T+KF Sbjct: 58 WADDLADAERVCVTLGLTLDVWDCEQEYKSTVVDYLIDAYARGYTPNPDVMCNQTIKFGT 117 Query: 129 LLSVTRQLGADVLATGHYIR----------------SRLYVGDDGKR-----RRIMCRPM 167 GAD +ATGHY + + D G + R Sbjct: 118 FAEKAFAHGADFIATGHYAQVDAGALAGATADVADANVASSADSGNADATFPVSPLIRAA 177 Query: 168 DLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQG 226 D +DQ+YFL+ ++ FP+G++ K+ VR+L RE GL + K DS ICFV + Sbjct: 178 DEHKDQTYFLWRVPAARIAKTIFPIGNIPSKKQVRELCREFGLGVEQKPDSDGICFVGEV 237 Query: 227 KYFDVVKRINAGIALEGDIVH-LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDK 285 + ++ GDIV G +LG+H+G YTIGQRRGL + G +VV D Sbjct: 238 GIRTFL--LDTLSQKAGDIVEWETGTVLGQHDGAFLYTIGQRRGLNLGGGPARYVVRTDT 295 Query: 286 NSSRVIVGPR---ESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ 342 + V V E L + L +WLG A G + V++R + VP V+ Sbjct: 296 ARNIVYVSSNIACEELHCTSLALERTHWLG-----AAPTPGARYCVRLRHTGALVPCCVR 350 Query: 343 RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387 + ++F++ + +A GQ+ V Y RV GGG I+ Sbjct: 351 YAGEQPTLEFDEPIMRIAPGQSAVLYDG----RRVCGGGFIAKHY 391 >gi|296272287|ref|YP_003654918.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Arcobacter nitrofigilis DSM 7299] gi|296096462|gb|ADG92412.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Arcobacter nitrofigilis DSM 7299] Length = 346 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 123/370 (33%), Positives = 192/370 (51%), Gaps = 33/370 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+V MSGG+DSSV A +L+++GY+V GV L+L+N +++ V Sbjct: 5 KKVMVGMSGGIDSSVTAYMLQKEGYEVEGVYLKLHNRTDG-------YHEKNLEYIEDVA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + +++ D ++F V F SY G TP PCV CN+ +KF +L ++ GA Sbjct: 58 AFLGIKYHILDLADKFTAEVYDYFVDSYLEGTTPNPCVKCNKQIKFGAMLDFAKEHGASY 117 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY ++ DG+ D +DQSYFL ++ L + FPL KKE + Sbjct: 118 LATGHYAKT------DGEFFYE---ADDKTKDQSYFLSQVPKEALPFMMFPLSTYKKEDI 168 Query: 201 RDLAREMGLD---IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 E+ I +K++SQ+ICFV+ Y DVVKR +A I + G+++ G ++G H Sbjct: 169 VKFGAELDSAYKRITEKNESQEICFVETV-YTDVVKR-HANIDVPGNVLDEKGNVIGEHK 226 Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G +YTIG+RRG V EP FV L+ + ++VG +E+LEV+ + +N D Sbjct: 227 GYAHYTIGKRRGFSVNGAHEPHFVTKLNPKDNTIVVGKKEALEVNNVIADNLNMFVDE-- 284 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 C VK+R P ++ D+ V + ++ GVA+GQ VFY + + Sbjct: 285 -----KELTCTVKLRYRTTSTPCEIKIEDNKVNISLKEPVFGVATGQLAVFYDN----QK 335 Query: 377 VLGGGIISGS 386 V+G I + Sbjct: 336 VIGSAWIKET 345 >gi|297202529|ref|ZP_06919926.1| tRNA methyl transferase [Streptomyces sviceus ATCC 29083] gi|297148131|gb|EFH28850.1| tRNA methyl transferase [Streptomyces sviceus ATCC 29083] Length = 374 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 136/382 (35%), Positives = 188/382 (49%), Gaps = 24/382 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQD 72 D + +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G CC +D Sbjct: 3 DTTQRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIED 61 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DARR D I + YV+D +RFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 62 SRDARRAADVIGIPFYVWDLADRFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDK 121 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 LG D + TGHY + R + R D+ +DQSY L ++QL FPL Sbjct: 122 ALALGFDAVCTGHYAKVVTLAD----GSRELHRASDMAKDQSYVLGVLDERQLAHALFPL 177 Query: 193 GD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250 GD K+ +R A GL +A K DS DICF+ G + EGDIV +G Sbjct: 178 GDTVTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGRA--EGDIVDESG 235 Query: 251 QILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 +G H G +TIGQR+GL + G+P +V+ + ++ V VGP +L+V + Sbjct: 236 AKVGTHEGAYGFTIGQRKGLRIGTPAADGKPRYVLDISPVNNTVTVGPAAALDVTALSAI 295 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV 366 + W G A ++R+ V + D + V F + GVA GQA V Sbjct: 296 KPRWCG-----AAPTGPGTYTAQLRAHGGETEVTAELVDGELRVSFTEPVRGVAPGQAIV 350 Query: 367 FYTSDSNEARVLGGGIISGSKR 388 Y RV+G I+ + R Sbjct: 351 LYDD----TRVVGSATIATTVR 368 >gi|291414311|ref|XP_002723404.1| PREDICTED: tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase-like [Oryctolagus cuniculus] Length = 490 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 107/367 (29%), Positives = 162/367 (44%), Gaps = 36/367 (9%) Query: 43 DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIV 102 +GY V GV ++ ++ G C A +D DA RVC +++ + Y + + N V Sbjct: 100 EGYQVTGVFMKNWDQLDEH---GVCTADRDCEDAYRVCQILDIPFHQVSYMKEYWNDVFS 156 Query: 103 PFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRR 161 F + Y G TP P + CNR +KF L LGAD +ATGHY R+ L + +++ Sbjct: 157 DFLNEYEKGRTPNPDIVCNRHIKFGCFLRYAVDNLGADAVATGHYARTSLEDEEVFQQKY 216 Query: 162 I------------------MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 I + + D +DQ++FL +Q L FPLG + K V+ + Sbjct: 217 IKRPEGLFRNRFEVRNPVKLLQAADSFKDQTFFLSQVSQPALRRTIFPLGGLTKPFVKKI 276 Query: 204 AREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGIIN 261 A E L + K +S ICFV + + + + G + + + Q+LG H G Sbjct: 277 AAENRLHHVLQKKESMGICFVGKRNFEHFILQYLQ--PRPGKFISIEDNQVLGTHKGWFL 334 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFED 318 YT+GQR + + EP FVV D V V P +L + ++W+ + Sbjct: 335 YTLGQRAKIS-GLREPWFVVDKDGAKGDVFVAPRTDHPALYRDLLRTNRVHWIAEEPPAA 393 Query: 319 AVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 V D +C + R VP + N DG V+V K+ + GQ VFY D Sbjct: 394 LVRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVKAVRALTPGQFAVFYKGD----E 449 Query: 377 VLGGGII 383 LG G I Sbjct: 450 CLGSGKI 456 >gi|325675868|ref|ZP_08155552.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodococcus equi ATCC 33707] gi|325553839|gb|EGD23517.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodococcus equi ATCC 33707] Length = 372 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 141/383 (36%), Positives = 200/383 (52%), Gaps = 33/383 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV+GV L L ++ + R GS CC+ +D DA+R Sbjct: 1 MRVLAAMSGGVDSAVAAARAVEAGHDVVGVHLAL-STAPGTLRTGSRGCCSKEDAGDAKR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ +RF+ VI F SYAAGETP PC+ CN +KF+ L LG Sbjct: 60 AADVLGIPFYVWDFADRFKEDVIDDFVESYAAGETPNPCLRCNEKIKFAALADRAYALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R +DG+ + R +D ++DQSY L T QL FP+GD KE Sbjct: 120 DAVATGHYARL-----EDGE----LRRAVDADKDQSYVLAVLTADQLSRAMFPVGDTPKE 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHN 257 +R+ A GL +A+K DS DICF+ G + G +V + G++L +H Sbjct: 171 QIREEAAARGLAVANKPDSHDICFIPSGDTRAFLGARIG--IRPGAVVDADTGEVLAQHE 228 Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G+ +TIGQR+GLGV A G+P +V ++ + V VG L+V I W Sbjct: 229 GVHGFTIGQRKGLGVQGPAADGQPRYVTAIEPETGTVRVGSAARLDVWTITAERAIWTSG 288 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN----------DDGVYVDFEKSEVGVASGQ 363 E + +C V++R+ + D G+ V + GVA GQ Sbjct: 289 QAPEGPI----ECIVQVRAHGGTARAVAEAVRGERSDGEGRDGGIVVQLSEPLTGVAKGQ 344 Query: 364 ACVFYTSDSNEARVLGGGIISGS 386 A V Y D + V+G G I+G+ Sbjct: 345 AVVLYRPDEDGDVVIGSGTIAGT 367 >gi|307326495|ref|ZP_07605690.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces violaceusniger Tu 4113] gi|306887903|gb|EFN18894.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces violaceusniger Tu 4113] Length = 383 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 140/388 (36%), Positives = 193/388 (49%), Gaps = 25/388 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQD 72 ++ + +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G CC +D Sbjct: 11 PRDGRRLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIED 69 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DARR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 70 SRDARRAADVIGIPFYVWDLAERFREDVVEDFIAEYEAGRTPNPCLRCNEKIKFAALLDK 129 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 LG D + TGHY + + R + R D+ +DQSY L ++QL FPL Sbjct: 130 ALALGFDAVCTGHYAT----IVERADGSRELHRASDMAKDQSYVLGVLDERQLAHAMFPL 185 Query: 193 GD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250 GD K +R A GL +A K DS DICF+ G + EGDIV +G Sbjct: 186 GDTLTTKGEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLAGHLGTA--EGDIVDEDG 243 Query: 251 QILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 + LG H G +TIGQRRGL + G+P +V+ + + V VGP E+L+V + Sbjct: 244 RKLGTHEGAYGFTIGQRRGLRIGHPAPDGKPRYVLDISPVDNTVTVGPVEALDVAALTAI 303 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQAC 365 + W G V ++R+ V + G+ V F + GVA GQA Sbjct: 304 KPRWCG-----APPVGPGSYTAQLRAHGGETEVTAEPIGVSGLRVTFAEPVRGVAPGQAI 358 Query: 366 VFYTSDSNEARVLGGGIISGSKRSDAVE 393 V Y RV+G I+ ++R+ V Sbjct: 359 VLYDD----TRVVGSATIATTERAQVVA 382 >gi|222823281|ref|YP_002574854.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter lari RM2100] gi|254811447|sp|B9KEW8|MNMA_CAMLR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|222538502|gb|ACM63603.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter lari RM2100] Length = 338 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 127/367 (34%), Positives = 194/367 (52%), Gaps = 34/367 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++VAMSGGVDS+V A LK+ G+++IG ++L+ +++ +V Sbjct: 1 MKILVAMSGGVDSTVTAYKLKQAGHEIIGCYMKLHGKPN--------YHEENIQKVEKVA 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + +++ D +E F+N V +PF ++Y G+TP PC CNR +K LL + LG + Sbjct: 53 NFLGIKYHILDLQEDFKNQVYMPFINTYKDGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R ++G ++ D +DQSYFL ++ L L FPLG+MKKE V Sbjct: 113 LATGHYARI-----ENG----LIKTAFDDSKDQSYFLANADKEALEYLIFPLGEMKKEDV 163 Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 + A E+ A + +S +ICFV+ Y V+ + + G + +G+ +G+H G Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQFM-DTKIPGIVRDSSGKEVGKHEG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V EP FV+ +D + +IVG +E L+++ L +IN D Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKIDPKKNEIIVGKKEELKINEFDLEKINLFIDA--- 278 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 C VKIR P V NDD V ++ G+ASGQ VFY D Sbjct: 279 ----KELDCEVKIRYRSRSTPCKVMINDDKSAKVILKEPVYGLASGQMAVFYDKD----L 330 Query: 377 VLGGGII 383 VL G I Sbjct: 331 VLASGFI 337 >gi|198274479|ref|ZP_03207011.1| hypothetical protein BACPLE_00627 [Bacteroides plebeius DSM 17135] gi|198272681|gb|EDY96950.1| hypothetical protein BACPLE_00627 [Bacteroides plebeius DSM 17135] Length = 349 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 123/371 (33%), Positives = 183/371 (49%), Gaps = 27/371 (7%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 ++ +V++ MSGG DSSV A LL+ GY+V G+T + Y + + DAR Sbjct: 2 KENNKVLLGMSGGTDSSVAALLLQDAGYEVTGITFRFYEKD---------GNIEYLDDAR 52 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 +C T+ + H ++D E F+ +I F Y AG TP+PC CN +K+ L V + G Sbjct: 53 DLCRTLGIPHLIYDAREMFQEKIIRYFIQEYMAGRTPVPCTLCNNYLKWPLLQQVADEKG 112 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 LATGHY+ + G + D ++DQS+FL+ Q L + P+G + K Sbjct: 113 IYHLATGHYVNKQKIDG-----YWYITCGNDADKDQSFFLWGLPQSILERMCLPMGGLTK 167 Query: 198 ESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRINA-GIALEGDIVHLNGQILGR 255 VR++A G L A K DS +CF Y +K G G+ GQ +G+ Sbjct: 168 TRVREIAAARGFLKAAKKRDSLGVCFCPM-DYRTFLKTHVPEGEISPGNFYDEQGQKIGK 226 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLREINWLGDG 314 H G YTIGQRRGLG+ + + LFV + ++VI+ ++LE + +YL N + Sbjct: 227 HEGYPFYTIGQRRGLGIHLNKALFVKEIIPQENKVIISDSLQALEKNEMYLTHWNLIN-- 284 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSN 373 D V+ VKIR + V DD +++ + +ASGQA FY ++ Sbjct: 285 --PDVVLGHEDVIVKIRYRKQANRCTVTLLDDQRLHIQLHEPLASIASGQAAAFYRDNT- 341 Query: 374 EARVLGGGIIS 384 VLGGGII Sbjct: 342 ---VLGGGIIE 349 >gi|257792258|ref|YP_003182864.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Eggerthella lenta DSM 2243] gi|257476155|gb|ACV56475.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Eggerthella lenta DSM 2243] Length = 352 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 131/364 (35%), Positives = 189/364 (51%), Gaps = 23/364 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 R+ + MSGGVDS+V AALL R GY+V+GVT + ++ + A VC Sbjct: 6 RIALGMSGGVDSAVSAALLMRAGYEVVGVTCRFRDNAATERAAADAAA---------VCS 56 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + H F V+ PF SSYAAG TP PCV CN K L+ V +LG D + Sbjct: 57 QLGIRHEAPGCVGEFERCVVEPFVSSYAAGLTPSPCVGCNARCKMPALVRVAGELGCDRI 116 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R R ++ R +D +DQSY L +Q+QL L PLG M K VR Sbjct: 117 ATGHYARIARLSD---SGRFVVKRALDARKDQSYMLSLLSQEQLARLVLPLGAMTKAEVR 173 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261 +A ++GL +A+K++SQD CF++ G Y ++ A GDIV G +LG H G+ N Sbjct: 174 VIAADLGLVVAEKAESQDNCFIE-GDYRPFLRARGVEDA-PGDIVDRMGNVLGCHEGLAN 231 Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 YT+GQR+G+GVA EP +VV + ++VG + + + + +NW +++ Sbjct: 232 YTVGQRKGIGVAGPEPYYVVEKRVETRELVVGFADETLIGSVVVGGMNWQAF----ESLG 287 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 + + VK+R P ++ DD V + + A GQ V Y D+ VLGG Sbjct: 288 ESYGAMVKLRYRSRPCACIIEPEDDQRVSLALRSPQPTTAPGQYAVLYDGDT----VLGG 343 Query: 381 GIIS 384 G+I Sbjct: 344 GMIE 347 >gi|194476611|ref|YP_002048790.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Paulinella chromatophora] gi|171191618|gb|ACB42580.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Paulinella chromatophora] Length = 434 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 125/375 (33%), Positives = 192/375 (51%), Gaps = 33/375 (8%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 L P ++ V +SGGVDSS+ AALL + G+ V G+TL L + KG+CC+ + + Sbjct: 38 LKNAPNKQKIAVGLSGGVDSSLAAALLVKAGWQVEGLTLWLMS------GKGTCCS-EGL 90 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA +C+ +N+ H++ D E F+ ++ Y +G TPLPC CNR VKF +L Sbjct: 91 LDAVGICEQLNIPHHIVDSREHFQKQIVAFLLRGYESGVTPLPCSRCNREVKFPLMLGWA 150 Query: 134 -RQLGADVLATGHYIRSRLYVGDDG-------KRRRIMCRPMDLERDQSYFLFATTQQQL 185 R+ G +ATGHY R + K R + R +D ++DQSYFL+ +Q+ L Sbjct: 151 ERERGIRKIATGHYARIVDKEDELNLDIPGLSKGRYKLLRGVDYQKDQSYFLYDLSQEIL 210 Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQ-GKYFDVVKRINAGIALEGD 244 L FPLG++ K R A+ L+ A+K +SQD+C G + + G+ Sbjct: 211 SSLIFPLGELTKVETRLEAKRYNLNTANKPESQDLCLADHHGSMKAFLNSYLP--SRTGE 268 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 IV +G ILG H+GI ++T+GQR+GL +A EPL+VV +D + ++VIVG R + Sbjct: 269 IVLSDGTILGHHDGIEHFTVGQRKGLKIAWKEPLYVVKIDASRNQVIVGSRNDVAYKSCL 328 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND----D-------GVYVDFE 353 + INW+ + A+ V++R P + D + F Sbjct: 329 VGAINWVSIAPPKKAI----DVEVQVRYRSKPEFARLIPLPFTITDQNAERPYRCRLIFH 384 Query: 354 KSEVGVASGQACVFY 368 ++ + GQA VFY Sbjct: 385 HNQFSITPGQAAVFY 399 >gi|315635921|ref|ZP_07891183.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arcobacter butzleri JV22] gi|315479900|gb|EFU70571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arcobacter butzleri JV22] Length = 345 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 131/374 (35%), Positives = 200/374 (53%), Gaps = 35/374 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 +V+V MSGG+DSSV A +L+ +GY+V G+ L+L+N +++ Sbjct: 2 SKKKVMVGMSGGIDSSVTAYMLQNEGYEVEGIYLKLHNRTDG-------YHEKNLGYIED 54 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V +N+ +++ D + F V F SY +G TP PCV CN+ +KF +L ++ GA Sbjct: 55 VAKFLNIKYHILDLADEFSKEVYDYFVDSYLSGTTPNPCVKCNKQIKFGAMLDFAKKHGA 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D LATGHY ++ DGK D +DQSYFL ++ L + FPL KKE Sbjct: 115 DFLATGHYAKT------DGKFFYE---ADDKTKDQSYFLSQVDKEALKYMMFPLSSYKKE 165 Query: 199 SVRDLAREMGLD---IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 + ++ + I +KS+SQ+ICFV+ Y DVVKR +A I EGD++ NG+++G+ Sbjct: 166 DIVKFGAKLDVAYKKITEKSESQEICFVETV-YTDVVKR-HANIDQEGDVLDENGKVVGK 223 Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN-WLGD 313 H G +YTIG+RRG V EP FV L+ + ++VG +E+LEV+ + +N ++ D Sbjct: 224 HKGFAHYTIGKRRGFTVKGAQEPHFVTKLNPKDNTIVVGKKEALEVNEVIGNNLNMFIDD 283 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F C VK+R P VQ D+ + ++ GVA+GQ VFY + Sbjct: 284 T--------KFSCNVKLRYRSVSTPCEVQIKDEKACITLKEPVFGVANGQLAVFYDN--- 332 Query: 374 EARVLGGGIISGSK 387 +V+G I +K Sbjct: 333 -QKVIGSAWIESTK 345 >gi|226305865|ref|YP_002765825.1| tRNA uridine-sulfurtransferase [Rhodococcus erythropolis PR4] gi|229493398|ref|ZP_04387187.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodococcus erythropolis SK121] gi|259495836|sp|C0ZXK1|MNMA_RHOE4 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|226184982|dbj|BAH33086.1| probable tRNA uridine-sulfurtransferase [Rhodococcus erythropolis PR4] gi|229319714|gb|EEN85546.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rhodococcus erythropolis SK121] Length = 370 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 144/379 (37%), Positives = 203/379 (53%), Gaps = 27/379 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRV 79 MRV+ AMSGGVDS+V AA G+DV+GV L L + A + CC+ +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVAAGHDVVGVHLALSTAPGALRTGSRGCCSKEDAGDARRA 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + YV+D+ +RF+ VI F +SYAAGETP PC+ CN +KF+ L LG D Sbjct: 61 ADVLGIPFYVWDFADRFKEDVIDDFVASYAAGETPNPCLRCNEKIKFTALADRAVALGFD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R +DG ++ R +D ++DQSY L T QL FP+GD KE Sbjct: 121 AVATGHYARL-----EDG----VLRRAVDADKDQSYVLGVLTADQLSRAMFPIGDTPKEQ 171 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258 +R+ A E GL +A+K DS DICF+ G + G +V + G++L H+G Sbjct: 172 IREEAAERGLAVANKPDSHDICFIPTGDTRAFLGARIG--VRPGSVVDADSGEVLAAHDG 229 Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 + +TIGQR+GLGV G P +V ++ + V VG ++L+V I + W Sbjct: 230 VHGFTIGQRKGLGVEGPAGDGRPRYVTAIEPETGTVRVGSAKNLDVWAISAQRAIWTSGQ 289 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-----GVYVDFEKSEVGVASGQACVFYT 369 E V +C V++R+ + DD G+ + + GVA GQA V Y Sbjct: 290 APEGPV----ECMVQVRAHGGLAQAVAEAVDDGTSGGGISISLREPLTGVAKGQAVVLYR 345 Query: 370 SDSN-EARVLGGGIISGSK 387 DS +VLG G ISG++ Sbjct: 346 PDSELGDQVLGSGTISGTE 364 >gi|224055025|ref|XP_002298404.1| predicted protein [Populus trichocarpa] gi|222845662|gb|EEE83209.1| predicted protein [Populus trichocarpa] Length = 434 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 117/380 (30%), Positives = 174/380 (45%), Gaps = 21/380 (5%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + K +R+ V +SGGVDSSV LL G+ L+++ + C +D+ Sbjct: 1 MADKDKPLRIAVLLSGGVDSSVALRLLHAAGHHCTAFYLKIWFQEDFNNFWSECPWEEDL 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 A+ VCD + V V + + + V+ Y G TP P V CN +KF + Sbjct: 61 KFAKGVCDQVGVPLEVVHLTDEYWSNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAI 120 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + D +A+GHY V D + ++ D +DQ+YFL TQ QL L FPLG Sbjct: 121 NNMEFDYVASGHYAHVIHPVSDQINKPSVLELSKDKLKDQTYFLSHLTQAQLKRLIFPLG 180 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQI 252 + KE VR+LA + L D+ DSQ ICF+ + K+ + V R EG I+ G Sbjct: 181 CIPKEEVRNLASKFDLPNKDRKDSQGICFLGKIKFSEFVGRHIGES--EGVILEAETGDF 238 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE-SLEVHR--IYLREIN 309 LG H G YTIGQR+GL + G P +VV D ++ V V SL+ R + + Sbjct: 239 LGIHRGFWFYTIGQRQGLRLPGG-PWYVVEKDVKNNVVFVSRNYFSLDKRRRSFRVGSLK 297 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQD--PVPVFVQRNDDG----VYVDFEKSEVGVASGQ 363 WL + + +C K+R V ++ +D V V + + G+A+GQ Sbjct: 298 WLSGSPTD--MTTQLQC--KVRHGPTFYDCSVKIELGEDSPEEVVAVHLCEDDQGLAAGQ 353 Query: 364 ACVFYTSDSNEARVLGGGII 383 FY +G G+I Sbjct: 354 FTAFYQG----RTCIGSGVI 369 >gi|256826638|ref|YP_003150597.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cryptobacterium curtum DSM 15641] gi|256582781|gb|ACU93915.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Cryptobacterium curtum DSM 15641] Length = 394 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 117/364 (32%), Positives = 170/364 (46%), Gaps = 24/364 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV+V +SGGVDSSV AALL G+DV G ++ + R C D+ DA+RV Sbjct: 50 RVLVGLSGGVDSSVCAALLVETGWDVCGAYMKNWTMDVPGMR---CPWADDLADAKRVAV 106 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + V+D++E ++ V+ Y AG TP P V CN+ VKF + G D + Sbjct: 107 RLGIDFRVYDFQEAYKREVVDYLVDEYRAGRTPNPDVMCNQQVKFGLFFDAAQDDGFDYI 166 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R+ + R D +DQ+YFL+ + + FPLG + K VR Sbjct: 167 ATGHYARASHDP-------VRLLRAADTHKDQTYFLYRMSSDAVAHTIFPLGGLLKTQVR 219 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGII 260 A + L A K+DSQ ICFV + D + G I+ + G+ +G H+G I Sbjct: 220 AAAEQRNLSTAHKADSQGICFVGEAGICDFLSLYVH--PQPGPIIDDDTGETVGYHDGAI 277 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV--GPRESLEVHRIYLREINWLGDGLFED 318 +TIGQR GLG+ G VV D + + + V GP ++ + L + W+ D ++ Sbjct: 278 FFTIGQRHGLGIGGGRRYRVVRKDMDHNILYVHDGPLAPVQDSLLELDRVRWIADVPPQE 337 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 C V+ + + + V E VASGQ+ V Y L Sbjct: 338 GA-----CEVRTHHGEKLLAATLLATATTATVQLEADHDAVASGQSVVIYRG----QECL 388 Query: 379 GGGI 382 GGGI Sbjct: 389 GGGI 392 >gi|283955448|ref|ZP_06372946.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni 414] gi|283793075|gb|EFC31846.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni 414] Length = 338 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 122/368 (33%), Positives = 194/368 (52%), Gaps = 34/368 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++VAMSGGVDS+V A LK G+++IG ++L+ +++ +V Sbjct: 1 MKILVAMSGGVDSTVTAYKLKNLGHEIIGCYMKLHGKPN--------YHEENIKKVEKVA 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + +++ D +E F+N V +PF +Y G+TP PC CNR +K LL + LG + Sbjct: 53 NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R + + +D +DQSYFL + ++ L L FPLG+MKKE V Sbjct: 113 LATGHYARLENNL---------IKTALDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163 Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 + A E+ A + +S +ICFV+ Y V+ + + G+++ G+++G+H G Sbjct: 164 KKFASTIEILKSFATQKESSEICFVEDT-YVQVLDQFM-DTKIPGEVLDNTGKVVGKHEG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V EP FV+ ++ +++IVG +E L++ L+ IN D Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFSLKNINLFIDA--- 278 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 C VKIR P V+ +DD + + G+ASGQ VFY D + Sbjct: 279 ----KELDCEVKIRYRSKSTPCKVEIHDDKSAKITLKDPVYGLASGQMAVFYDDD----K 330 Query: 377 VLGGGIIS 384 V+ G I Sbjct: 331 VIASGFIE 338 >gi|326443600|ref|ZP_08218334.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces clavuligerus ATCC 27064] Length = 367 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 138/370 (37%), Positives = 184/370 (49%), Gaps = 24/370 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRVCDTIN 84 MSGGVDS+V AA G+DV GV L L ++ S R G CC +D DARR D I Sbjct: 1 MSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIEDSRDARRAADVIG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL LG D + TG Sbjct: 60 IPFYVWDLAERFREDVVEDFVAEYEAGRTPNPCLRCNEKIKFAALLDKALALGFDAVCTG 119 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKESVRD 202 HY R + R D+ +DQSY L ++QL FPLGD K+ +R Sbjct: 120 HYATVVTLPD----GGRELHRASDMAKDQSYVLGVLDERQLAHAMFPLGDTLTTKDEIRA 175 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINY 262 A GL +A K DS DICF+ G + EGDIV +G LG H G + Sbjct: 176 EAERRGLAVAKKPDSHDICFIADGDTQGFLASRLGRA--EGDIVDESGTRLGTHEGAYGF 233 Query: 263 TIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 TIGQR+GL + G+P +V+ + +RV VGP E+L+V + W G Sbjct: 234 TIGQRKGLRIGHPAADGKPRYVLDISPVDNRVTVGPAEALDVVGLTAIRPRWCG-----T 288 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 A ++R+ PV + DG+ V+F + GVA GQA V Y RV+ Sbjct: 289 APAGAGAYTAQLRAHGGETPVTAEPVGDGLRVEFAEPVRGVAPGQAIVLYDG----TRVV 344 Query: 379 GGGIISGSKR 388 G I+ ++R Sbjct: 345 GSATIASTRR 354 >gi|281348930|gb|EFB24514.1| hypothetical protein PANDA_011920 [Ailuropoda melanoleuca] Length = 392 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 106/366 (28%), Positives = 165/366 (45%), Gaps = 36/366 (9%) Query: 44 GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVP 103 GY V GV ++ ++S G C A +D DA RVC +++ + Y + + N V Sbjct: 1 GYQVTGVFMKNWDSLDEH---GVCIADRDCEDAYRVCQILDIPFHQVSYVKEYWNDVFSD 57 Query: 104 FASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRI 162 F S Y G TP P + CN+ +KFS LGAD +ATGHY R+ L + +++ I Sbjct: 58 FLSEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADAVATGHYARTSLEDEEVFQQKHI 117 Query: 163 ------------------MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 + + D +DQ++FL +Q L FPLG + K+ V+ +A Sbjct: 118 RRPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQDALRRTLFPLGGLTKDFVKKIA 177 Query: 205 REMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGIINY 262 E L + K +S ICF+ + + + + + G + + + ++LG H G Y Sbjct: 178 AENRLHHVLQKKESMGICFIGKRNFENFILQYLQ--PRPGKFISIEDSKVLGTHKGWFLY 235 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDA 319 T+GQR + + EP +VV D V V P +L + ++W+ + Sbjct: 236 TLGQRAKIS-GLQEPWYVVEKDGTKGDVFVAPRTDHPALYRDLLRTSRVHWIAEEPPAAL 294 Query: 320 VVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377 V D +C + R VP + N DG V+V K+ +A GQ VFY D Sbjct: 295 VRDKMMECHFRFRHQMALVPCVLTLNQDGTVWVTAVKAVRALAPGQFAVFYKGD----EC 350 Query: 378 LGGGII 383 LG G I Sbjct: 351 LGSGKI 356 >gi|62320516|dbj|BAD95081.1| hypothetical protein [Arabidopsis thaliana] Length = 497 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 113/378 (29%), Positives = 165/378 (43%), Gaps = 17/378 (4%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L K +RV V +SGGVDSSV LL G+ L+++ C Sbjct: 73 LSCSMPEKPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEGFENFWNQCPWED 132 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ A+ VC+ ++V V + + V+ Y G TP P V CN +KF + Sbjct: 133 DLKYAKHVCEQVDVPLEVVHLTDEYWERVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD 192 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + D + +GHY R D ++ D+ +DQ+YFL +Q QL L FP Sbjct: 193 AISDMEYDYVGSGHYARVVHPPADQNDASSVLELSQDMVKDQTYFLSHLSQTQLKRLLFP 252 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250 LG +KK+ VR LA + L D+ DSQ ICF+ + K+ D V R +EG I+ +G Sbjct: 253 LGCVKKDEVRKLATQFDLPNKDRKDSQGICFLGKIKFSDFVCRHIGE--MEGIILEAESG 310 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE---SLEVHRIYLRE 307 LG H G YTIGQR+GL + G P +VV D ++ V V + Sbjct: 311 DFLGNHRGFWFYTIGQRQGLRLPGG-PWYVVEKDTKNNVVFVSRNYYSIDKRRRIFRVGS 369 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQAC 365 + W V +C K+R + DG V ++ + G+A+GQ Sbjct: 370 LRWNSGKP--SGKVRELRC--KVRHGPGFYSCSFEMEGDGDVAVVHLDEDDQGLAAGQFA 425 Query: 366 VFYTSDSNEARVLGGGII 383 FY +G G+I Sbjct: 426 AFYEG----TTCIGSGVI 439 >gi|317477931|ref|ZP_07937114.1| tRNA methyl transferase [Bacteroides sp. 4_1_36] gi|316905845|gb|EFV27616.1| tRNA methyl transferase [Bacteroides sp. 4_1_36] Length = 363 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 119/370 (32%), Positives = 176/370 (47%), Gaps = 26/370 (7%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 D RV++ MSGG DSSV A L+ GY+V GVT + Y + + + DAR Sbjct: 15 KSDKRVLLGMSGGTDSSVAAMRLQEAGYEVTGVTFRFYEAGDETGY---------LEDAR 65 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + + + H +D E FR+ +I F Y G TP+PC CN +K++ L + + G Sbjct: 66 ALALKLGMKHITYDARELFRSRIIRYFVEEYLRGRTPVPCTVCNNELKWALLAKIADEKG 125 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 ++TGHY+R L G + + D ++DQ++FL+ Q L + P+GD+ K Sbjct: 126 IYWISTGHYVRKVLSGG-----KYYIAPAADKDKDQTFFLWGLKQDILQRMLLPMGDITK 180 Query: 198 ESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD--IVHLNGQILG 254 R A E G +A K DS +CF Y +KR L G V G LG Sbjct: 181 NEARSYAAERGFGQVAAKKDSIGVCFCPL-DYRSFLKREVPETLLPGKGRFVDEKGDFLG 239 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H G YT+GQRRGLG+ + + +FV S+ V++ P SL ++L + N + + Sbjct: 240 WHEGYPFYTVGQRRGLGIHLNKAVFVKETRVESNEVVLAPLSSLYRQEMWLGDWNLVENS 299 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 V+ + VKIR + V +G + V + +A GQA FY D Sbjct: 300 ----RVLGANEVIVKIRYRKQANRCRVTLTVEGLLRVRLIEPLESIAPGQAAAFYDKD-- 353 Query: 374 EARVLGGGII 383 +LGGGII Sbjct: 354 -GYLLGGGII 362 >gi|307128600|ref|YP_003880630.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Sulcia muelleri CARI] gi|306483062|gb|ADM89932.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Candidatus Sulcia muelleri CARI] Length = 387 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 123/403 (30%), Positives = 203/403 (50%), Gaps = 56/403 (13%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RV+V MSGGVDSSV A LLK+ GYDVIG+ L+ YN C +D DA V Sbjct: 2 KRVIVGMSGGVDSSVAALLLKKKGYDVIGIYLKYYNINN------KCPWREDSIDAMLVS 55 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 ++ + Y+ D + ++ +I Y G TP P + CN +KF L +R +D+ Sbjct: 56 QSLKIPFYIIDITKNYKKLIINYIYKEYKKGFTPNPDILCNSKIKFKIFLEKSRFFKSDL 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R + + +GK + +D +DQSYFL Q Q+ + FPLG++ K+ V Sbjct: 116 IATGHYVR-KEKIKKNGKIYYKIISGIDDNKDQSYFLCNLNQDQIQNSIFPLGNLNKKKV 174 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN----------- 249 R++A + L A K DSQ ICF+ + K+ + +K+ + +GDI+ +N Sbjct: 175 REIANKYNLINAKKKDSQGICFIGKIKFLNFLKK--KLVEKKGDIIEINKNNHIYKYDKY 232 Query: 250 ----------------------GQILGRHNGIINYTIGQRRGLGVAMGE-PLFVVYLDKN 286 G+I+G+H G+ +T GQR+GL + + PLF++ D Sbjct: 233 KFSSKKEFLFFLSKKIKYKKEYGKIIGKHIGVHYFTKGQRKGLKIGGYKYPLFIIEKDII 292 Query: 287 SSRVIVG---PRESLEVHRIYL--REINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFV 341 ++ + VG L I + + I+W+ + + + + +IR Q+ + Sbjct: 293 NNILYVGMGKNHPGLYTKVICIKKKNIHWMNENFIKKKI----EVECRIRYRQNFQKATL 348 Query: 342 QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 N + +YV+FE ++ V +GQ V+Y ++ ++G G+IS Sbjct: 349 FINKNSLYVEFEIPQLAVNAGQFIVWYINN----EIIGSGLIS 387 >gi|29829295|ref|NP_823929.1| tRNA-specific 2-thiouridylase MnmA [Streptomyces avermitilis MA-4680] gi|81719846|sp|Q82JK2|MNMA_STRAW RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|29606402|dbj|BAC70464.1| putative tRNA (5-methylaminomethyl-2-thiouridine)-methyltransferase [Streptomyces avermitilis MA-4680] Length = 376 Score = 368 bits (945), Expect = 1e-99, Method: Composition-based stats. Identities = 138/376 (36%), Positives = 189/376 (50%), Gaps = 24/376 (6%) Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAG 70 + + P+ +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G CC Sbjct: 3 ETPQRPRRLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTI 61 Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130 +D DARR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 62 EDSRDARRAADVIGIPFYVWDLAERFREDVVEDFIAEYEAGRTPNPCLRCNEKIKFAALL 121 Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 LG D + TGHY + V +DG R + R D+ +DQSY L +QL F Sbjct: 122 DKALALGFDAVCTGHYAQV--IVREDGT--RELHRASDMAKDQSYVLGVLDDRQLAHALF 177 Query: 191 PLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL 248 PLGD K+ +R A GL +A K DS DICF+ G + EGDIV Sbjct: 178 PLGDTVTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLANRLGKA--EGDIVDE 235 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 +G ++G H G +TIGQR+GL + G+P +V+ + + V VGP +L+V + Sbjct: 236 SGSVVGSHEGAYGFTIGQRKGLRIGTPAPDGKPRYVLDISPVDNTVTVGPAAALDVTALT 295 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQA 364 + W G A ++R+ V + D + V F + GVA GQA Sbjct: 296 AIKPRWCG-----AAPTGPGTYTAQLRAHGGETQVTAELVDGELQVTFAEPVRGVAPGQA 350 Query: 365 CVFYTSDSNEARVLGG 380 V Y RV+G Sbjct: 351 VVLYDG----TRVVGS 362 >gi|19114314|ref|NP_593402.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase [Schizosaccharomyces pombe 972h-] gi|3122971|sp|O13947|MTU1_SCHPO RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1 gi|2388924|emb|CAB11659.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Schizosaccharomyces pombe] Length = 415 Score = 367 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 123/407 (30%), Positives = 191/407 (46%), Gaps = 33/407 (8%) Query: 4 SEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63 S+A + +S L +V VAMSGGVDSS A LLK GY+V GV ++ + + Sbjct: 15 SKAFQPHSTRLQWPKSQDKVFVAMSGGVDSSFSAYLLKSQGYNVEGVFMRNWLDEDS--A 72 Query: 64 KGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123 C A +D ++VC +N+S F++E+ + N V P Y G TP P V CNR Sbjct: 73 PSGCPAERDWATVQKVCKKLNISCRRFNFEKEYWNLVFEPSLDLYENGLTPNPDVSCNRQ 132 Query: 124 VKFSDLLSVTRQL------GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFL 177 VKF L ++ G LA+GHY +S + + + MC P D +DQ+ FL Sbjct: 133 VKFGALFDALKKHCENNVKGDWWLASGHYAKSVVNIETNE---SHMCIPTDKRKDQTLFL 189 Query: 178 FATTQQQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQ---GKYFDVVK 233 ++ L FPL + KE+V+ A G +IA+K +SQ +CFV K+ ++ Sbjct: 190 CTIRKEALEKTIFPLHNWTKENVKKQASSAGFKEIAEKQESQGLCFVSPNVGRKFRKFLQ 249 Query: 234 RINAGIALEGDIV---HLNGQILGRHNGIINYTIGQRRGLGVAMGE-----PLFVVYLDK 285 R ++ ++ G+ G H GI + T+G+R GL + + +V D Sbjct: 250 RYLNFSDRPIKVIAGKNVVGEFSGNH-GIWSLTVGERCGLSLPQAQSEYFGRWYVWKKDI 308 Query: 286 NSSRVIVG---PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ 342 ++ + + E L IYL++ W G L ++ CFV++R Q P V Sbjct: 309 KNNALYICRGTNNELLMSKCIYLKDWKWCGTKL-QNLEKSALSCFVRVRHQQPLQPAKVT 367 Query: 343 -RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKR 388 RN + V + F+ + V GQ Y +D LGGG++ + Sbjct: 368 WRNPESVKIHFQDKQRAVTPGQVIAVYVNDV----CLGGGMVDTVEP 410 >gi|302325766|gb|ADL24967.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 390 Score = 367 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 125/378 (33%), Positives = 198/378 (52%), Gaps = 29/378 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS----RKASKRKGSCCAGQD-- 72 + RV V +SGGVDS++ A LLK+ GY+V+G+T+ ++ R+G +D Sbjct: 27 QKKRVAVGLSGGVDSALSAYLLKKQGYEVVGMTMATWDDSVKMPAVEGREGCYGPSEDKN 86 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 + +A+ V + + + HYV E ++ V+ F + Y AG TP PCV CN+++KF L Sbjct: 87 IEEAKLVAERLGIPHYVVPVAEDYKREVLDYFRAEYRAGRTPNPCVRCNQSIKFGALQHA 146 Query: 133 TRQLG--ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 R+LG D ATGHY R D + +D +DQ+YFL + +QL + F Sbjct: 147 ARKLGIDFDYFATGHYARLDFKNPD----VPFLYEALDEHKDQTYFLSRLSAEQLSTVIF 202 Query: 191 PLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 PLG M+K V+ LA+E+G D A K +SQD F++ G Y + + + GD + +N Sbjct: 203 PLGGMQKADVKALAKEIGWDDFATKRESQD--FIECGDYSVLFDESD---NVPGDFIDVN 257 Query: 250 GQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 G++LG+H GI++YTIGQR+GL + EPL+VV +D + ++VI+GPR +L + ++ Sbjct: 258 GKVLGKHKGIVHYTIGQRKGLNIGGQAEPLYVVAIDAHHNQVILGPRSALSCTEVSAVDL 317 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND---DGVYVDFEKSEVGVASGQAC 365 N + + E + + IR + D + V F++ + A GQ Sbjct: 318 NLM---VSETSPLLKEPLTAHIRLGHKGATARITALDTAAGTISVKFDEPQFASAPGQVL 374 Query: 366 VFYTSDSNEARVLGGGII 383 V Y V+ II Sbjct: 375 VLYAD----KGVVASAII 388 >gi|225621511|ref|YP_002722770.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brachyspira hyodysenteriae WA1] gi|225216332|gb|ACN85066.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brachyspira hyodysenteriae WA1] Length = 352 Score = 367 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 130/368 (35%), Positives = 196/368 (53%), Gaps = 27/368 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD---VYDARR 78 ++ V MS GVDS+ A LLK G DV GVT+ L+N + + GSC + V + + Sbjct: 3 KIAVGMSAGVDSTTTAKLLKEQGNDVFGVTMLLWNGDERAPLSGSCYSPYQKNIVEECEK 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137 I + +Y FD E F+ VI SY G TP PC+ CN +KF L + G Sbjct: 63 YAKAIGIDYYAFDISEMFQKKVIDYVTESYKKGFTPNPCIMCNSQIKFMALFEAIEKQGL 122 Query: 138 -ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 D ATGHY + D+ +R ++ R +L +DQSYFL+ TQ QL + FP+ + Sbjct: 123 EFDKFATGHYAGVKY---DEKTKRYLLLRGKNLIKDQSYFLYRLTQDQLSKIMFPMHENT 179 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGR 255 KE R++ARE LD+A+KS+SQD + + FD EG I++++ +ILG Sbjct: 180 KEDTRNIAREYNLDVAEKSESQDFFAGEYHRLFD--------EDKEGSIINIDTNEILGH 231 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H GI +YT+GQR+GLG+A EPLF+V LD ++ V VG + V+ + + ++NW+ Sbjct: 232 HKGIWHYTVGQRKGLGIAYKEPLFIVALDSETNTVYVGNKNHTFVNEVKIYDVNWIA--- 288 Query: 316 FEDAVVDGFKCFVKIRSSQDPV-PVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 + F+ VK RS+ + +++ + + F + +A GQ+CV Y +D Sbjct: 289 --EPKQKEFEALVKTRSAHKGTMAAVIPIDENTINIKFHEPTGIIAKGQSCVCYDNDIT- 345 Query: 375 ARVLGGGI 382 L GGI Sbjct: 346 ---LCGGI 350 >gi|291004692|ref|ZP_06562665.1| tRNA-specific 2-thiouridylase MnmA [Saccharopolyspora erythraea NRRL 2338] Length = 356 Score = 367 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 132/368 (35%), Positives = 186/368 (50%), Gaps = 19/368 (5%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRVCDTIN 84 MSGGVDS+V AA G++V+GV L L +++ + R G CC +D +DARR D + Sbjct: 1 MSGGVDSAVAAARAVEAGHEVVGVHLAL-SAKPGTLRTGARGCCTIEDSHDARRAADILG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV+D+ ERF VI F YAAG TP PC+ CN +KF LL LG D + TG Sbjct: 60 IPFYVWDFAERFTEEVIETFVGEYAAGRTPNPCLTCNEKIKFEALLEKAMALGFDAVCTG 119 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY R + G ++ R D +DQSY L + T +QL FPLGD K VR A Sbjct: 120 HYARLTVEDG-----VPVLRRSRDEGKDQSYVLASLTAEQLGHSMFPLGDSLKSQVRQEA 174 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNGIINYT 263 E GL +A K DS DICF+ G ++ G +V G +LG H G+ +T Sbjct: 175 AERGLAVAKKPDSHDICFIPDGDTKKFLESKLGQ--KPGQLVDAETGAVLGEHTGVHGFT 232 Query: 264 IGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +GQR+GLG+ G P +V+ L+ S V VG + L V I + W + Sbjct: 233 VGQRKGLGIDAPAPDGRPRYVLSLEPVSGTVKVGSADHLGVTEIDAKRPIW----PSQRE 288 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 + +C V++R+ + D G+ + + GVA GQA V Y + VLG Sbjct: 289 LDGPTECVVQVRAHGGTADAVAEVADGGMSIRLRRPLRGVAPGQAVVLYRPEEEGDLVLG 348 Query: 380 GGIISGSK 387 +I+ ++ Sbjct: 349 SALIAATR 356 >gi|157363709|ref|YP_001470476.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermotoga lettingae TMO] gi|205828979|sp|A8F5H8|MNMA_THELT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|157314313|gb|ABV33412.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Thermotoga lettingae TMO] Length = 349 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 120/368 (32%), Positives = 191/368 (51%), Gaps = 24/368 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK---GSCCAGQDVYDAR 77 M++ + +SGGVDS+V LK +GY+++ ++ R+ CC+ D DA+ Sbjct: 1 MKIGILLSGGVDSAVALYQLKNEGYEIVAYHMKTMKDEFFLNRQVKHKICCSPSDTVDAK 60 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + T V V + E F+ +I + Y G TP PC CNR +KF L+ + + G Sbjct: 61 LIAKTAGVPLKVVNLHEIFKEKIITYYLQEYTRGRTPNPCYFCNRFIKFGYLMDLMIEDG 120 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 DV+++GHY R DGK + + +D E+DQSYFL + +++L + FP GD K Sbjct: 121 VDVISSGHYARVV-----DGK----LLKALDKEKDQSYFLASIEKERLKKIVFPNGDKTK 171 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + +RD+A++ G+ + K++SQD+CF+ G + I G I G+ +G H Sbjct: 172 DEIRDIAKKAGIHVHSKAESQDLCFIPDGDQKRFFEEQGIKI-KSGPIFDKYGKKIGEHT 230 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 G+INYTIGQR+ +GV+ GE ++V + + + +IVG + ++ + + + N L D Sbjct: 231 GLINYTIGQRK-IGVSAGERVYVTRICADRNALIVGNEKDVQSDKFSVIDFNLLVD---- 285 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + F+ VK+R + VP V + V V VA GQA VFY D V Sbjct: 286 --IDKNFEATVKVRKNSTEVPCKVSLENHRVIVKTTMPVFAVAPGQAAVFYRGDI----V 339 Query: 378 LGGGIISG 385 +G GII Sbjct: 340 IGAGIIEK 347 >gi|153807264|ref|ZP_01959932.1| hypothetical protein BACCAC_01542 [Bacteroides caccae ATCC 43185] gi|149130384|gb|EDM21594.1| hypothetical protein BACCAC_01542 [Bacteroides caccae ATCC 43185] Length = 365 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 116/385 (30%), Positives = 177/385 (45%), Gaps = 39/385 (10%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV++ MSGG DSSV A L GY+VIGVT + Y +++ + DAR Sbjct: 4 ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFYELNGSTEY---------LEDARS 54 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + H +D E F +I F Y AG TP+PC CN +K+ L + ++G Sbjct: 55 LAEHLGIRHITYDAREVFNKQIIEYFVQEYMAGRTPVPCTLCNNYLKWPLLAELADEMGI 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY+R + D ++DQ++FL+ Q L + P+GD+ K Sbjct: 115 FYIATGHYVRKVKLEDT-----YYITSAADSDKDQTFFLWGLKQDILRRMLLPMGDITKV 169 Query: 199 SVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAG--------------IALEG 243 R LA E G +A K DS +CF Y +K I G Sbjct: 170 EARALAAERGFRKVATKKDSLGVCFCPM-DYRSFLKNWLDKNDQLFTAHGQKWSEIVRRG 228 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRI 303 V G + H G YTIGQRRGLG+ + P+FV + + +++ P +SLE + Sbjct: 229 RFVDETGHFIAWHEGYPFYTIGQRRGLGIHLNRPVFVKDIFPEKNEIVLAPLQSLEKTEM 288 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASG 362 +L N + E+ V+ VKIR + V + +++ + +A G Sbjct: 289 WLDNWNLIN----ENRVLGCSDIIVKIRYRKQENHGTVTVTPEHLLHIQLHEPLTAIAPG 344 Query: 363 QACVFYTSDSNEARVLGGGIISGSK 387 QA FY D +LGGGII ++ Sbjct: 345 QAAAFYKDD----LLLGGGIIVKAR 365 >gi|296393981|ref|YP_003658865.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Segniliparus rotundus DSM 44985] gi|296181128|gb|ADG98034.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Segniliparus rotundus DSM 44985] Length = 375 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 140/374 (37%), Positives = 188/374 (50%), Gaps = 24/374 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRV 79 M+V+ AMSGGVDS+V AA G+DV GV L L + ++ CC+ +D DARR Sbjct: 1 MKVLAAMSGGVDSAVAAARAVEAGHDVTGVHLALSRNPDNTRGGSRGCCSVEDSRDARRA 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + YV+D+ E F VI F ++YA G TP PCV CN +KF+ LL LG D Sbjct: 61 ADMLGIPFYVWDFSEAFEREVIDQFVATYAEGRTPNPCVTCNEKIKFAALLDRAVALGFD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R DG + R +D ++DQSY L T QQL FP+GD K Sbjct: 121 KVATGHYARL------DGT---TLRRAVDADKDQSYVLAVLTAQQLSRAMFPVGDTPKPR 171 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVV----KRINAGIALEGDIVH-LNGQILG 254 +R+ A GL +A K DS DICF+ G + + A G+ G +LG Sbjct: 172 IREEAERRGLAVAHKPDSHDICFIPSGDTKAFLGARIAVRSGAAARPGEFRDHRTGAVLG 231 Query: 255 RHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINW 310 H+G I +T+GQRRGL + G P +V ++ + V VG E L V I +R W Sbjct: 232 HHDGAIGFTVGQRRGLRLGNPTGDGVPRYVTAVEPETGVVRVGTMEDLRVFSISVRTAVW 291 Query: 311 LGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 G F C V+IR+ P V+ G V+ ++ VASGQ V Y Sbjct: 292 SGGAAP----AAAFPCVVQIRAHGGFAPARVRAAGAGFEVELDEPLEAVASGQTVVLYDP 347 Query: 371 D-SNEARVLGGGII 383 D RV+G G+I Sbjct: 348 DPVLGDRVIGSGVI 361 >gi|302336036|ref|YP_003801243.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Olsenella uli DSM 7084] gi|301319876|gb|ADK68363.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Olsenella uli DSM 7084] Length = 380 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 123/386 (31%), Positives = 175/386 (45%), Gaps = 36/386 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV + MSGGVDS++ AALL G+DV V ++ ++ R C D+ DA RV Sbjct: 4 RVCLGMSGGVDSALAAALLVEQGHDVKAVYMRNWSRDLPGFR---CTWADDLADAERVAV 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 T+ + V+D E ++ V+ +YA G TP P V CN+TVKF GAD + Sbjct: 61 TLGLDLEVWDCERTYKETVVDYLVDAYAHGYTPNPDVMCNQTVKFGAFAERAFAEGADFV 120 Query: 142 ATGHYIRSRLYVGDDGKRRRI----------------MCRPMDLERDQSYFLFATTQQQL 185 ATGHY R + + + R D +DQ+YFL+ L Sbjct: 121 ATGHYARVGVAPPMETAPSASAPAPSASAPAPSRRATLFRAADEHKDQTYFLWRVPTGTL 180 Query: 186 CDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD 244 FP+GD+ K VR + GL + K DS ICF+ + + ++ GD Sbjct: 181 ARTLFPVGDIPSKGEVRRMCAARGLGVERKPDSDGICFIGEVGIRSFL--LDVLDRRPGD 238 Query: 245 IVH-LNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR---ESLEV 300 IV G +LGRH+G +T+GQR+GL + G +VV D S+ V V +L Sbjct: 239 IVEWETGTVLGRHDGAFLFTVGQRKGLDLGGGPARYVVTTDTESNVVYVTADRSCPALWC 298 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGV 359 R+ L ++ W+ + V+ R + + P V + DG V VD K V Sbjct: 299 RRLELSDVLWIAGVPPAEG-----DYVVRTRHTGELRPAHVMPHADGTVSVDLAKPMRAV 353 Query: 360 ASGQACVFYTSDSNEARVLGGGIISG 385 A GQ+ V Y LGGGII Sbjct: 354 APGQSAVIYDG----LVCLGGGIIQK 375 >gi|159036753|ref|YP_001536006.1| tRNA-specific 2-thiouridylase MnmA [Salinispora arenicola CNS-205] gi|205816910|sp|A8M5E1|MNMA_SALAI RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|157915588|gb|ABV97015.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Salinispora arenicola CNS-205] Length = 360 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 147/371 (39%), Positives = 197/371 (53%), Gaps = 22/371 (5%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRV 79 RV+ AMSGGVDS+V AA G+DV GV L L + + + R G CC +D DARR Sbjct: 5 RVLAAMSGGVDSAVAAARAVAAGHDVTGVHLALARNPQ-TYRTGARGCCTLEDSRDARRA 63 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D I + YV+D ERF+ V+ F + YAAG TP PC+ CN +KF+ +L LG D Sbjct: 64 ADVIGIPFYVWDMAERFQADVVDDFVAEYAAGRTPNPCLRCNEKIKFAAVLDRAVALGFD 123 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 + TGH+ R +G DG ++ R +DL +DQSY L T++QL FPLGD K Sbjct: 124 AVVTGHHAR----LGADG----LLRRSVDLAKDQSYVLGVLTREQLGRSMFPLGDSTKTQ 175 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258 VR A GL +ADK DS DICFV G + A GD+V G ++GRH G Sbjct: 176 VRAEATGRGLTVADKPDSHDICFVADGDTRGFLAERLG--ATPGDVVDSSTGAVVGRHTG 233 Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 YT+GQRRGL + G P +V+ + ++ V VGP E+L V ++ + W G Sbjct: 234 AYAYTVGQRRGLHLDRPAPDGRPRYVLSITPKTNTVTVGPAEALAVSQVRAQRPVWTGG- 292 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 D +C V++R+ D VP V DG+ + + GVA+GQA V Y D Sbjct: 293 ---PRPADPIECEVQLRAHGDVVPATVAVTGDGLRAELHRPVRGVAAGQAIVAYRPDPGG 349 Query: 375 ARVLGGGIISG 385 VLG I+ Sbjct: 350 DVVLGSATIAA 360 >gi|315638313|ref|ZP_07893494.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter upsaliensis JV21] gi|315481660|gb|EFU72283.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter upsaliensis JV21] Length = 338 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 127/368 (34%), Positives = 201/368 (54%), Gaps = 34/368 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++VAMSGGVDS+V A LK+ G++VIG ++L+ S +++ +V Sbjct: 1 MKILVAMSGGVDSTVTAYKLKQAGHEVIGCYMKLHGK--------SGYHEENIAKVEKVA 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + +++ D +E F+ V +PF ++Y G+TP PC CNR +K LL + LG + Sbjct: 53 KFLQIPYHILDLQEDFKAKVYMPFINTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R ++G + +D +DQSYFL ++ L L FPLG+MKKE V Sbjct: 113 LATGHYARL-----ENG----CIKVAVDESKDQSYFLANANKEALQYLIFPLGEMKKEDV 163 Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 + A E+ A + +S +ICFV+ Y DV+++ ++G+++ +G+++G HNG Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVENT-YVDVLEQFM-DTKIKGEVLDSSGKVVGEHNG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V EP FV+ ++ ++++VG +E L+ L IN D Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKENQIVVGTKEELKTKEFKLENINLFIDK--- 278 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 F C VKIR VP V +++ + ++ G+ASGQ VFY D R Sbjct: 279 ----KAFNCEVKIRYRSKSVPCEVLVDENLNAQISLKEPVYGLASGQMAVFYEED----R 330 Query: 377 VLGGGIIS 384 V+ G IS Sbjct: 331 VIASGFIS 338 >gi|302865761|ref|YP_003834398.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Micromonospora aurantiaca ATCC 27029] gi|315502317|ref|YP_004081204.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Micromonospora sp. L5] gi|302568620|gb|ADL44822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Micromonospora aurantiaca ATCC 27029] gi|315408936|gb|ADU07053.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Micromonospora sp. L5] Length = 358 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 143/373 (38%), Positives = 197/373 (52%), Gaps = 22/373 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV GV L L + + + R G CC +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVEAGHDVTGVHLALARNPQ-TYRTGARGCCTLEDSRDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D +RF + V+ F + YAAG TP PC+ CN +KF+ +L LG Sbjct: 60 AADVLGIPFYVWDMADRFHDDVVDDFVAEYAAGRTPNPCLRCNEKIKFAAVLDRAVALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGH+ R +G DG ++ R +D +DQSY L T+ QL FPLGD K Sbjct: 120 DAVVTGHHAR----LGADG----LLRRSVDAAKDQSYVLAVLTRAQLDRSIFPLGDSTKA 171 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHN 257 VR A GL +ADK DS DICF+ G + G +V L G ++G H+ Sbjct: 172 EVRAEAARRGLAVADKPDSHDICFIADGDTRGFLAERLGEA--PGQVVDALTGAVVGSHS 229 Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G YT+GQRRGL + G P +V+ + ++ V VGP E+LEV + W G Sbjct: 230 GAYQYTVGQRRGLHLDRPAPDGRPRYVLSITPTTNTVTVGPAEALEVSDVRATRPVWTGG 289 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + V +C V++R+ D VP V+ + DG+ + GVA+GQA V Y D Sbjct: 290 PRPDGPV----ECEVQLRAHGDVVPAAVEVDADGLRASLRRPVRGVAAGQAIVAYRPDPA 345 Query: 374 EARVLGGGIISGS 386 VLG I+ + Sbjct: 346 GDVVLGSATITAA 358 >gi|297746327|emb|CBI16383.3| unnamed protein product [Vitis vinifera] Length = 544 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 110/382 (28%), Positives = 169/382 (44%), Gaps = 21/382 (5%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L +++ V +SGGVDSSV LL G+ L+++ C Sbjct: 79 LSCSLPNNRLKIAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPWED 138 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ A+ VCD ++V V + + V+ Y G TP P V CN +KF + Sbjct: 139 DLKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD 198 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 D +A+GHY D + ++ D+ +DQ+YFL +Q QL L FP Sbjct: 199 AISSKEFDYVASGHYANVVHSFTDQMDKPSVLELSKDMVKDQTYFLSHLSQIQLKRLIFP 258 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250 LG + K+ VR LA ++ L D+ DSQ ICF+ + K+ + V R EG I+ G Sbjct: 259 LGCIPKDEVRSLATKLDLPNRDRKDSQGICFLGKIKFSEFVARHIGE--KEGIILEAETG 316 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE-SLEVHR--IYLRE 307 +LG+H G YTIGQR+GL + G P +VV D ++ V V SL+ R + Sbjct: 317 DLLGKHRGFWFYTIGQRQGLRLPGG-PWYVVEKDVKNNVVFVSRNYFSLDKRRRLFRVGS 375 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV--FVQRNDDG----VYVDFEKSEVGVAS 361 + W+ + + K+R ++ +DG V + + G+A+ Sbjct: 376 LKWIS----REPPGQINQLQCKVRHGPGFYNCSFTMEPGEDGHEDVAVVQLSEDDQGLAA 431 Query: 362 GQACVFYTSDSNEARVLGGGII 383 GQ FY +G G+I Sbjct: 432 GQFTAFYQG----RSCIGSGVI 449 >gi|225435460|ref|XP_002282827.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 540 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 110/382 (28%), Positives = 169/382 (44%), Gaps = 21/382 (5%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L +++ V +SGGVDSSV LL G+ L+++ C Sbjct: 75 LSCSLPNNRLKIAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEDFENFWSECPWED 134 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ A+ VCD ++V V + + V+ Y G TP P V CN +KF + Sbjct: 135 DLKYAKAVCDQVDVPLEVVHLTDEYWKNVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD 194 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 D +A+GHY D + ++ D+ +DQ+YFL +Q QL L FP Sbjct: 195 AISSKEFDYVASGHYANVVHSFTDQMDKPSVLELSKDMVKDQTYFLSHLSQIQLKRLIFP 254 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250 LG + K+ VR LA ++ L D+ DSQ ICF+ + K+ + V R EG I+ G Sbjct: 255 LGCIPKDEVRSLATKLDLPNRDRKDSQGICFLGKIKFSEFVARHIGE--KEGIILEAETG 312 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE-SLEVHR--IYLRE 307 +LG+H G YTIGQR+GL + G P +VV D ++ V V SL+ R + Sbjct: 313 DLLGKHRGFWFYTIGQRQGLRLPGG-PWYVVEKDVKNNVVFVSRNYFSLDKRRRLFRVGS 371 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV--FVQRNDDG----VYVDFEKSEVGVAS 361 + W+ + + K+R ++ +DG V + + G+A+ Sbjct: 372 LKWIS----REPPGQINQLQCKVRHGPGFYNCSFTMEPGEDGHEDVAVVQLSEDDQGLAA 427 Query: 362 GQACVFYTSDSNEARVLGGGII 383 GQ FY +G G+I Sbjct: 428 GQFTAFYQG----RSCIGSGVI 445 >gi|241767515|ref|ZP_04765194.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidovorax delafieldii 2AN] gi|241361655|gb|EER58004.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Acidovorax delafieldii 2AN] Length = 310 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 105/315 (33%), Positives = 153/315 (48%), Gaps = 32/315 (10%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 P RVVV +SGGVDS+V A LLK+ G++V+G+ ++ + S+ C + D DA Sbjct: 3 APTKQRVVVGLSGGVDSAVTAYLLKQQGHEVVGIFMKNWEDDDDSE---YCSSNIDFVDA 59 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 V D I + ++ +++ V F Y AG TP P V CN +KF L +L Sbjct: 60 AAVADVIGIEIEHVNFAAEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRL 119 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 GA+ +ATGHY R R + + +D +DQSYFL Q QL FP+G++ Sbjct: 120 GAEKIATGHYARVRQNAA---TGLFELLKGLDPSKDQSYFLHRLNQAQLSKTLFPVGELH 176 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K VR +A E+GL A K DS ICF+ + + + + R + G + G+ LGRH Sbjct: 177 KAEVRRIAAEIGLPNAKKKDSTGICFIGERPFREFLNRYISHA--PGPMQDDRGRTLGRH 234 Query: 257 NGIINYTIGQRRGLGVAM---------------------GEPLFVVYLDKNSS--RVIVG 293 G+ YT+GQR+GLG+ EP FV D + RV+ G Sbjct: 235 VGLSFYTLGQRQGLGIGGVKAKGAELKAAQERGQRGVGEHEPWFVARKDLEKNVLRVVQG 294 Query: 294 P-RESLEVHRIYLRE 307 L HR+ ++ Sbjct: 295 HDHPWLLSHRLDAQD 309 >gi|31544324|ref|NP_852902.1| multifunctional FAD synthetase/riboflavin kinase/tRNA-specific 2-thiouridylase [Mycoplasma gallisepticum str. R(low)] gi|81572856|sp|Q7NBZ0|MNMA_MYCGA RecName: Full=Trifunctional protein ribF/mnmA; Includes: RecName: Full=FMN adenylyltransferase; AltName: Full=FAD pyrophosphorylase; AltName: Full=FAD synthase; Includes: RecName: Full=Riboflavin kinase; AltName: Full=Flavokinase; Includes: RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|31541168|gb|AAP56470.1| Trifunctional protein RibF/TrmU (FAD synthetase, Riboflavin kinase, tRNA-specific 2-thiouridylase) [Mycoplasma gallisepticum str. R(low)] gi|284930363|gb|ADC30302.1| Trifunctional protein RibF/TrmU (FAD synthetase, Riboflavin kinase, tRNA-specific 2-thiouridylase) [Mycoplasma gallisepticum str. R(high)] Length = 657 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 119/392 (30%), Positives = 192/392 (48%), Gaps = 31/392 (7%) Query: 11 SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYN--------SRKASK 62 +L + +VVVA+SGGVDS+V A LL++ GYDV+ +Q ++ S A Sbjct: 277 ALSFFHKQEKPKVVVALSGGVDSAVCAYLLQQQGYDVVAAFMQNWDKDLNFELLSDHADD 336 Query: 63 RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122 + C A QD D +++C+ + + Y F++ E++ N V + Y G TP P V CN+ Sbjct: 337 QIQGCDAKQDYEDTQKLCEQLKIKLYHFNFVEQYWNDVFLKVLEDYKKGLTPNPDVLCNQ 396 Query: 123 TVKFSDLLSVTRQLGAD--VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 KF ++ R+ D +A GHY +L DD + D +DQ+YFL Sbjct: 397 FGKFGWFINALRKQFGDDIKIAFGHYA--KLITKDDE---VFLVHTKDHNKDQTYFLTML 451 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 ++QL ++ FPL ++ K +VR++A++ L +A+K DS ICF+ + + + Sbjct: 452 KKEQLKNIIFPLSELDKPTVREIAKQANLYVANKKDSTGICFIGERNFKQFLSNYL--AI 509 Query: 241 LEGDIVHLN-GQILGRHNGIINYTIGQ-RRGLGVAMGEPLFVVYLDKNSSRVIVGPRES- 297 +G I+ ++ + +G H+G+ YTIGQ RR E +FV D N++ + V S Sbjct: 510 KKGPIILIDENKKIGEHDGLYFYTIGQSRRLHVGGTKEKIFVCDKDYNNNTLYVCYESSK 569 Query: 298 ---LEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFE 353 L L + NWL D + + K +++ R Q V +DD V V + Sbjct: 570 DQYLSSVSCELEKFNWLIDTKDQ---LFNKKLWIRFRHRQKLQECEIVSYHDDKVIVKY- 625 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIISG 385 ++GV GQ V Y V+GGG I+ Sbjct: 626 TKQIGVTPGQYGVIYD---QNLWVVGGGKITK 654 >gi|145336613|ref|NP_175542.2| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arabidopsis thaliana] gi|332194528|gb|AEE32649.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arabidopsis thaliana] Length = 497 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 112/378 (29%), Positives = 165/378 (43%), Gaps = 17/378 (4%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L K +RV V +SGGVDSSV LL G+ L+++ C Sbjct: 73 LSCSMPEKPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEGFENFWNQCPWED 132 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ A+ VC+ ++V V + + V+ Y G TP P V CN +KF + Sbjct: 133 DLKYAKHVCEQVDVPLEVVHLTDEYWERVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD 192 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + D + +GHY + D ++ D+ +DQ+YFL +Q QL L FP Sbjct: 193 AISDMEYDYVGSGHYAKVVHPPADQNDASSVLELSQDMVKDQTYFLSHLSQTQLKRLLFP 252 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250 LG +KK+ VR LA + L D+ DSQ ICF+ + K+ D V R +EG I+ +G Sbjct: 253 LGCVKKDEVRKLATQFDLPNKDRKDSQGICFLGKIKFSDFVCRHIGE--MEGIILEAESG 310 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE---SLEVHRIYLRE 307 LG H G YTIGQR+GL + G P +VV D ++ V V + Sbjct: 311 DFLGNHRGFWFYTIGQRQGLRLPGG-PWYVVEKDTKNNVVFVSRNYYSIDKRRRIFRVGS 369 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQAC 365 + W V +C K+R + DG V ++ + G+A+GQ Sbjct: 370 LRWNSGKP--SGKVRELRC--KVRHGPGFYSCSFEMEGDGDVAVVHLDEDDQGLAAGQFA 425 Query: 366 VFYTSDSNEARVLGGGII 383 FY +G G+I Sbjct: 426 AFYEG----TTCIGSGVI 439 >gi|305432523|ref|ZP_07401685.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter coli JV20] gi|304444562|gb|EFM37213.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter coli JV20] Length = 338 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 123/368 (33%), Positives = 197/368 (53%), Gaps = 34/368 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++VAMSGGVDS+V A LK G++VIG ++L+ +++ +V Sbjct: 1 MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPN--------YHEENIKKVEKVA 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + +++ D +E F+N V +PF +Y G+TP PC CNR +K LL + LG + Sbjct: 53 NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R + + +D +DQSYFL + ++ L L FPLG+MKKE V Sbjct: 113 LATGHYARLENNL---------IKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163 Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 + A E+ A + +S +ICFV+ Y V+ + + G+++ +G+++G+H G Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQFM-DTKIPGEVLDSSGKVIGKHEG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V +P FV+ ++ +++IVG +E L+++ L+ IN D Sbjct: 222 YMHYTIGKRRGFEVRGAHKPHFVLKINPKQNQIIVGTKEELKINEFKLKNINLFIDA--- 278 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 C VKIR P V +DD + ++S G+ASGQ VFY D + Sbjct: 279 ----KELDCEVKIRYRSKSTPCKVIISDDKSASISLKESVYGLASGQMAVFYDGD----K 330 Query: 377 VLGGGIIS 384 V+ G I Sbjct: 331 VIASGFIE 338 >gi|160888582|ref|ZP_02069585.1| hypothetical protein BACUNI_00999 [Bacteroides uniformis ATCC 8492] gi|156861896|gb|EDO55327.1| hypothetical protein BACUNI_00999 [Bacteroides uniformis ATCC 8492] Length = 350 Score = 366 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 120/370 (32%), Positives = 176/370 (47%), Gaps = 26/370 (7%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 D RV++ MSGG DSSV A L+ GY+V GVT + Y + + + DAR Sbjct: 2 KSDKRVLLGMSGGTDSSVAAMRLQEAGYEVTGVTFRFYEAGDETGY---------LEDAR 52 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + + + H +D E FR+ +I F Y G TP+PC CN +K++ L + + G Sbjct: 53 ALALKLGMKHITYDARELFRSRIIRYFVEEYLRGRTPVPCTVCNNELKWALLAKIADEKG 112 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 ++TGHY+R L G + + D ++DQ++FL+ Q L + P+GD+ K Sbjct: 113 IYWISTGHYVRKVLSGG-----KYYIAPAADKDKDQTFFLWGLKQDILQRMLLPMGDITK 167 Query: 198 ESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD--IVHLNGQILG 254 R A E G +A K DS +CF Y +KR L G V G LG Sbjct: 168 NEARSYAAERGFGQVAAKKDSIGVCFCPL-DYRSFLKREVPETLLPGKGRFVDEKGDFLG 226 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H G YT+GQRRGLG+ + + +FV S+ V++ P SL ++L E N + + Sbjct: 227 WHEGYPFYTVGQRRGLGIHLNKAVFVKETRVESNEVVLAPLSSLYKQEMWLGEWNLVENS 286 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 V+ + VKIR + V +G + V + +A GQA FY D Sbjct: 287 ----RVLGANEVIVKIRYRKQANRCRVTLTVEGLLRVRLIEPLESIAPGQAAAFYDKD-- 340 Query: 374 EARVLGGGII 383 +LGGGII Sbjct: 341 -GYLLGGGII 349 >gi|325963946|ref|YP_004241852.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arthrobacter phenanthrenivorans Sphe3] gi|323470033|gb|ADX73718.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arthrobacter phenanthrenivorans Sphe3] Length = 369 Score = 366 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 129/366 (35%), Positives = 177/366 (48%), Gaps = 27/366 (7%) Query: 44 GYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVI 101 G+DV+GV L L + + R GS CC +D DA R CD + + +YV+D+ ERF+ V+ Sbjct: 14 GHDVVGVHLAL-SRMPGTLRTGSRGCCTIEDSRDAWRACDVLGIPYYVWDFSERFKEDVV 72 Query: 102 VPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRR 161 F YAAG TP PC+ CN +KF+ LL LG D + TGHY + V +D R Sbjct: 73 QDFIDEYAAGRTPNPCMRCNERIKFAALLEKAIALGFDAVCTGHYAK----VIEDADGNR 128 Query: 162 IMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KESVRDLAREMGLDIADKSDSQDI 220 + R D +DQSY L T +QL FPL D K VR A GL +A+K DS DI Sbjct: 129 ELHRAADWAKDQSYVLGVLTHEQLKHSMFPLADTPSKAEVRAEAERRGLSVANKPDSHDI 188 Query: 221 CFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAM----GE 276 CF+ G + GDIV G +G H G +T+GQRRGL + G+ Sbjct: 189 CFIPDGDTAGWLAEKIEMTT--GDIVDETGTKVGEHPGANAFTVGQRRGLKLGTPAADGK 246 Query: 277 PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDP 336 P FV+ + ++V+VGP L + I +++W G + E F C ++R+ DP Sbjct: 247 PRFVLEIRPKENKVVVGPEALLAIDEIRGIKVSWAGLPIAEVGTGAEFDCHAQVRAHGDP 306 Query: 337 VPVFVQRNDDG---------VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387 VP + G + V GVA GQ V Y +RVLG I ++ Sbjct: 307 VPATARMEPAGAGEDPAGSQLVVRLTTPLRGVAPGQTVVLYQG----SRVLGQATIDAAR 362 Query: 388 RSDAVE 393 E Sbjct: 363 SLQRAE 368 >gi|289571223|ref|ZP_06451450.1| LOW QUALITY PROTEIN: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis T17] gi|289544977|gb|EFD48625.1| LOW QUALITY PROTEIN: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase trmU [Mycobacterium tuberculosis T17] Length = 347 Score = 366 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 135/363 (37%), Positives = 190/363 (52%), Gaps = 22/363 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+V+ AMSGGVDSSV AA + G++V+GV + L ++ + R GS CC+ +D DARR Sbjct: 1 MKVLAAMSGGVDSSVAAARMVDAGHEVVGVHMAL-STAPGTLRTGSRGCCSKEDAADARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V D + + YV+D+ E+F+ VI F SSYA GETP PCV CN+ +KF+ L + LG Sbjct: 60 VADVLGIPFYVWDFAEKFKEDVINDFVSSYARGETPNPCVRCNQQIKFAALSARAVALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D +ATGHY R + R +D ++DQSY L T QQL FP+GD K Sbjct: 120 DTVATGHYARLS---------GGRLRRAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKR 170 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 +R A GL +A+K DS DICF+ G + G +V +G +L H+G Sbjct: 171 QIRAEAARRGLAVANKPDSHDICFIPSGNTKAFLGERIG--VRRGVVVDADGVVLASHDG 228 Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 + +TIGQRRGLG+A G P +V +D +++ V VG L+V + R + Sbjct: 229 VHGFTIGQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTAGA 288 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 A C V++R+ + V + D ++V GVA GQ V Y D Sbjct: 289 ----APSGPVDCVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQTLVLYRPDPAG 344 Query: 375 ARV 377 V Sbjct: 345 DEV 347 >gi|261415477|ref|YP_003249160.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371933|gb|ACX74678.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 366 Score = 366 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 125/378 (33%), Positives = 199/378 (52%), Gaps = 29/378 (7%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNS----RKASKRKGSCCAGQD-- 72 + RV V +SGGVDS++ A LLK+ GY+V+G+T+ ++ R+G +D Sbjct: 3 QKKRVAVGLSGGVDSALSAYLLKKQGYEVVGMTMATWDDSVKMPAVEGREGCYGPSEDKN 62 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 + +A+ V + + + HYV E ++ V+ F + Y AG TP PCV CN+++KF L Sbjct: 63 IEEAKLVAERLGIPHYVVPVAEDYKREVLDYFRAEYRAGRTPNPCVRCNQSIKFGALQHA 122 Query: 133 TRQLG--ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 R+LG D ATGHY R D + +D +DQ+YFL + +QL + F Sbjct: 123 ARKLGIDFDYFATGHYARLDFKNPD----VPFLYEALDEHKDQTYFLSRLSAEQLSTVIF 178 Query: 191 PLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 PLG M+K V+ LA+E+G D A K +SQD F++ G Y + + + GD + +N Sbjct: 179 PLGGMQKADVKALAKEIGWDDFATKRESQD--FIECGDYSVLFDESD---NVPGDFIDVN 233 Query: 250 GQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 G++LG+H GI++YTIGQR+GL + EPL+VV +D + ++VI+GPR +L + ++ Sbjct: 234 GKVLGKHKGIVHYTIGQRKGLNIGGQAEPLYVVAIDAHHNQVILGPRSALSCTEVSAVDL 293 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRND---DGVYVDFEKSEVGVASGQAC 365 N + + E + + IR + D + V F++ + A GQ Sbjct: 294 NLM---VSETSPLLKEPLTAHIRLGHKGATARITALDTAAGTISVKFDEPQFASAPGQVL 350 Query: 366 VFYTSDSNEARVLGGGII 383 V Y + V+ II Sbjct: 351 VLY----ADKGVVASAII 364 >gi|297852856|ref|XP_002894309.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arabidopsis lyrata subsp. lyrata] gi|297340151|gb|EFH70568.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arabidopsis lyrata subsp. lyrata] Length = 500 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 112/378 (29%), Positives = 165/378 (43%), Gaps = 17/378 (4%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71 L K +RV V +SGGVDSSV LL G+ L+++ C Sbjct: 76 LSCSMPEKPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEGFENFWNQCPWED 135 Query: 72 DVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131 D+ A+ VC+ ++V V + + V+ Y G TP P V CN +KF + Sbjct: 136 DLKYAKHVCEQVDVPLEVVHLTDEYWERVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMD 195 Query: 132 VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191 + D + +GHY + D ++ D+ +DQ+YFL +Q QL L FP Sbjct: 196 AISDMEYDYVGSGHYAKVVHPPVDQNDASSVLELSQDMVKDQTYFLSHLSQTQLKRLIFP 255 Query: 192 LGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNG 250 LG +KK+ VR LA + L D+ DSQ ICF+ + K+ D V +EG I+ G Sbjct: 256 LGCVKKDEVRKLATQFDLPNKDRKDSQGICFLGKIKFSDFVCAHIGE--MEGIILEAETG 313 Query: 251 QILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE---SLEVHRIYLRE 307 LG H G YTIGQR+GL + G P +VV D ++ V V + Sbjct: 314 DFLGNHRGFWFYTIGQRQGLRLPGG-PWYVVEKDTKNNVVFVSRNYYSIDKRRRIFRVGS 372 Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQAC 365 + WL + V +C K+R + DG V ++ + G+A+GQ Sbjct: 373 LRWLSGKPSGN--VRELRC--KVRHGPSFYSCSFEMEADGDVAVVHLDEDDQGLAAGQFA 428 Query: 366 VFYTSDSNEARVLGGGII 383 FY +G G+I Sbjct: 429 AFYEG----TTCIGSGVI 442 >gi|313147999|ref|ZP_07810192.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides fragilis 3_1_12] gi|313136766|gb|EFR54126.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides fragilis 3_1_12] Length = 364 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 113/379 (29%), Positives = 180/379 (47%), Gaps = 36/379 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV++ MSGG DSSV A LL GY+V GVT + Y +++ + DAR Sbjct: 4 ENKRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNDSTEY---------LEDARA 54 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + H +D E FR ++ F Y AG TP+PC CN +K+ L + ++G Sbjct: 55 LATRLGIEHITYDAREIFRKKIVDYFIDEYMAGHTPVPCTLCNNWLKWPLLAKIADEMGI 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 LATGHY+R + G + D ++DQS+FL+ Q L + P+G+M K Sbjct: 115 FYLATGHYVRKKWMDGS-----YYITLAADPDKDQSFFLWGLKQDILQRMLLPMGEMTKP 169 Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIA-----------LEGDIV 246 R A G + ++ K DS +CF Y +K+ +G + Sbjct: 170 EARAYAAGRGFEKVSKKKDSIGVCFCPL-DYRSFLKKHLCDAGGDRSNKIIREVGKGRFL 228 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 +G + H G YTIGQRRGLG+ + +FV + ++ VI+ P +SLE ++L+ Sbjct: 229 DESGNFIAWHEGYPFYTIGQRRGLGIQLNRAVFVKEIHPETNEVILAPLKSLEKSEMWLK 288 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365 + N + E ++ V+IR + V +G +++ + +A GQA Sbjct: 289 DWNIIN----ESRLLGYDDIIVRIRYRKQENHCSVTITPEGLLHIQLHEPLSAIAEGQAA 344 Query: 366 VFYTSDSNEARVLGGGIIS 384 FY +LGGGII+ Sbjct: 345 AFYKD----GLLLGGGIIT 359 >gi|134102624|ref|YP_001108285.1| tRNA-specific 2-thiouridylase MnmA [Saccharopolyspora erythraea NRRL 2338] gi|133915247|emb|CAM05360.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Saccharopolyspora erythraea NRRL 2338] Length = 348 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 124/360 (34%), Positives = 178/360 (49%), Gaps = 19/360 (5%) Query: 35 VVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRVCDTINVSHYVFDY 92 + AA G++V+GV L L +++ + R G CC +D +DARR D + + YV+D+ Sbjct: 1 MAAARAVEAGHEVVGVHLAL-SAKPGTLRTGARGCCTIEDSHDARRAADILGIPFYVWDF 59 Query: 93 EERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRLY 152 ERF VI F YAAG TP PC+ CN +KF LL LG D + TGHY R + Sbjct: 60 AERFTEEVIETFVGEYAAGRTPNPCLTCNEKIKFEALLEKAMALGFDAVCTGHYARLTVE 119 Query: 153 VGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIA 212 G ++ R D +DQSY L + T +QL FPLGD K VR A E GL +A Sbjct: 120 DG-----VPVLRRSRDEGKDQSYVLASLTAEQLGHSMFPLGDSLKSQVRQEAAERGLAVA 174 Query: 213 DKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNGIINYTIGQRRGLG 271 K DS DICF+ G ++ G +V G +LG H G+ +T+GQR+GLG Sbjct: 175 KKPDSHDICFIPDGDTKKFLESKLGQ--KPGQLVDAETGAVLGEHTGVHGFTVGQRKGLG 232 Query: 272 V----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCF 327 + G P +V+ L+ S V VG + L V I + W + + +C Sbjct: 233 IDAPAPDGRPRYVLSLEPVSGTVKVGSADHLGVTEIDAKRPIW----PSQRELDGPTECV 288 Query: 328 VKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387 V++R+ + D G+ + + GVA GQA V Y + VLG +I+ ++ Sbjct: 289 VQVRAHGGTADAVAEVADGGMSIRLRRPLRGVAPGQAVVLYRPEEEGDLVLGSALIAATR 348 >gi|121613044|ref|YP_999778.1| tRNA-specific 2-thiouridylase MnmA [Campylobacter jejuni subsp. jejuni 81-176] gi|167004752|ref|ZP_02270510.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni 81-176] gi|166234848|sp|A1VXD7|MNMA_CAMJJ RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|87249047|gb|EAQ72009.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni 81-176] Length = 338 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 122/368 (33%), Positives = 194/368 (52%), Gaps = 34/368 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++VAMSGGVDS+V A LK G++VIG ++L+ +++ +V Sbjct: 1 MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPN--------YHEENIKKVEKVA 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + +++ D +E F+N V +PF +Y G+TP PC CNR +K LL + LG + Sbjct: 53 NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R + + +D +DQSYFL + ++ L L FPLG+MKKE V Sbjct: 113 LATGHYARLENNL---------IKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163 Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 + A E+ A + +S +ICFV+ Y V+ + + G+++ +G+++G+H G Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQFM-DTKIPGEVLDSSGKVVGKHEG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V EP FV+ ++ +++IVG +E L++ L+ IN D Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLFIDA--- 278 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 C VKIR P V+ +D + + G+ASGQ VFY D + Sbjct: 279 ----KELDCEVKIRYRSKSTPCKVEIYEDKSAKITLKDPVYGLASGQMAVFYDHD----K 330 Query: 377 VLGGGIIS 384 V+ G I Sbjct: 331 VIASGFIE 338 >gi|57169043|ref|ZP_00368171.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter coli RM2228] gi|57019588|gb|EAL56278.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter coli RM2228] Length = 338 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 123/368 (33%), Positives = 197/368 (53%), Gaps = 34/368 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++VAMSGGVDS+V A LK G++VIG ++L+ +++ +V Sbjct: 1 MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPN--------YHEENIKKVEKVA 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + +++ D +E F+N V +PF +Y G+TP PC CNR +K LL + LG + Sbjct: 53 NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R + + +D +DQSYFL + ++ L L FPLG+MKKE V Sbjct: 113 LATGHYARLENNL---------IRTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163 Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 + A E+ A + +S +ICFV+ Y V+ + + G+++ +G+++G+H G Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQFM-DTKIPGEVLDSSGKVVGKHEG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V +P FV+ ++ +++IVG +E L+++ L+ IN D Sbjct: 222 YMHYTIGKRRGFEVRGAHKPHFVLKINPKQNQIIVGTKEELKINEFKLKNINLFIDA--- 278 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 C VKIR P V +DD + ++S G+ASGQ VFY D + Sbjct: 279 ----KELDCEVKIRYRSKSTPCKVIISDDKSASISLKESVYGLASGQMAVFYDGD----K 330 Query: 377 VLGGGIIS 384 V+ G I Sbjct: 331 VIASGFIE 338 >gi|57237061|ref|YP_178073.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni RM1221] gi|86149727|ref|ZP_01067957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni CF93-6] gi|86151459|ref|ZP_01069674.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni 260.94] gi|86154052|ref|ZP_01072253.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni HB93-13] gi|88597704|ref|ZP_01100937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni 84-25] gi|148926860|ref|ZP_01810538.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni CG8486] gi|205356437|ref|ZP_03223201.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni CG8421] gi|218561738|ref|YP_002343517.1| tRNA-specific 2-thiouridylase MnmA [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|14195288|sp|Q9PJ66|MNMA_CAMJE RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|71658012|sp|Q5HXB2|MNMA_CAMJR RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|57165865|gb|AAW34644.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni RM1221] gi|85839995|gb|EAQ57254.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni CF93-6] gi|85841806|gb|EAQ59053.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni 260.94] gi|85842466|gb|EAQ59680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni HB93-13] gi|88190008|gb|EAQ93984.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni 84-25] gi|112359444|emb|CAL34227.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145844437|gb|EDK21545.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni CG8486] gi|205345624|gb|EDZ32263.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni CG8421] gi|315057493|gb|ADT71822.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni S3] gi|315929157|gb|EFV08382.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni 305] Length = 338 Score = 366 bits (939), Expect = 5e-99, Method: Composition-based stats. Identities = 122/368 (33%), Positives = 194/368 (52%), Gaps = 34/368 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++VAMSGGVDS+V A LK G++VIG ++L+ +++ +V Sbjct: 1 MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPN--------YHEENIKKVEKVA 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + +++ D +E F+N V +PF +Y G+TP PC CNR +K LL + LG + Sbjct: 53 NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R + + +D +DQSYFL + ++ L L FPLG+MKKE V Sbjct: 113 LATGHYARLENNL---------IKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163 Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 + A E+ A + +S +ICFV+ Y V+ + + G+++ +G+++G+H G Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQFM-DTKIPGEVLDSSGKVVGKHEG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V EP FV+ ++ +++IVG +E L++ L+ IN D Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLFIDA--- 278 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 C VKIR P V+ +D + + G+ASGQ VFY D + Sbjct: 279 ----KELDCEVKIRYRSKSTPCKVEIYEDKSAKIILKDPVYGLASGQMAVFYDHD----K 330 Query: 377 VLGGGIIS 384 V+ G I Sbjct: 331 VIASGFIE 338 >gi|47215507|emb|CAG01169.1| unnamed protein product [Tetraodon nigroviridis] Length = 387 Score = 366 bits (939), Expect = 5e-99, Method: Composition-based stats. Identities = 101/394 (25%), Positives = 156/394 (39%), Gaps = 64/394 (16%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV AMSGGVDSSV A LLKR GY+V GV ++ ++ +G C A +D DA RVC Sbjct: 6 HVVCAMSGGVDSSVAALLLKRRGYNVTGVFMKNWD---LLDERGVCAAEKDCEDAYRVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 +++ + Y + + + V + Y G TP P + CN+ +KF+ Sbjct: 63 ILDIPFHQVSYVKEYWHKVFSDLLNEYEKGRTPNPDILCNKHIKFNHFYKHAI------- 115 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 + + D +DQ++FL +Q+ L FPL + K V+ Sbjct: 116 ---------------NTLSARLYKGADHLKDQTFFLSQISQEALRQTIFPLAGLTKSFVK 160 Query: 202 DLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN-- 257 +A E G + + +S ICF+ + + + + G+ V + +G + G H Sbjct: 161 KIAAEAGFHHVLKRKESMGICFIGERNFENFILEYLE--PKPGNFVSVEDGTVKGAHKGR 218 Query: 258 -----------------------GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP 294 G T+GQR +G + FVV D + V+V P Sbjct: 219 RVLCVSSDSCVFTFTHAFVCVPPGWFTLTLGQRARIG-GQKDAWFVVDKDIATGDVLVAP 277 Query: 295 ---RESLEVHRIYLREINWL-GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VY 349 +L + +W+ GD E A +C + P V N DG V+ Sbjct: 278 TTNHPALYRDTVRTARFHWIAGDPPVELARTQMMECHFRFIHQMPLTPCTVTLNLDGSVW 337 Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 + + GQ V Y D LG G I Sbjct: 338 ISLSHPVRALTPGQYAVLYKGD----ECLGSGKI 367 >gi|242018594|ref|XP_002429759.1| methyltransferase, putative [Pediculus humanus corporis] gi|212514771|gb|EEB17021.1| methyltransferase, putative [Pediculus humanus corporis] Length = 401 Score = 365 bits (938), Expect = 6e-99, Method: Composition-based stats. Identities = 104/374 (27%), Positives = 179/374 (47%), Gaps = 22/374 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 V V +SGGVDS+V A LLK+ GY+VIGV ++ ++ G C +D+ A+ C Sbjct: 5 KNVAVGISGGVDSAVAALLLKKRGYNVIGVYMKNWD---LVDENGICSTSEDLEYAKYTC 61 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGAD 139 + I++ + ++ + + N V V F Y G TP P + CN+ +KF+ + ++L AD Sbjct: 62 NQIDIPFHEVNFVKEYWNNVFVAFTKEYEDGYTPNPDILCNKYIKFNAFSNYAFKKLRAD 121 Query: 140 VLATGHYIRSRLYVGDDGKR---RRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 +ATGHY ++ + + + + D+ +DQ++FL Q+ L FPLGD+ Sbjct: 122 AIATGHYAKTSFGNFLENYKPQTKAKLLVAKDIIKDQTFFLSQIPQETLKKTIFPLGDLH 181 Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILG 254 K V+ +A E + ++ K +S ICF+ + + + G ++ + G+ G Sbjct: 182 KSEVKKIAEENDMKKLSRKPESMGICFIGSRNFQTFIDQYIK--PKPGKFINMITGKEEG 239 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV--GPRESLEVHRIYLRE-INWL 311 +H+GI +T+GQR + P FVV D ++ + V G SL I++ E W+ Sbjct: 240 KHDGIHMWTVGQRCRIK-GFSVPRFVVKKDPTTANIWVVAGTNHSLLYSYIFVTEKPYWI 298 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTS 370 + + + G K K + + + +D + V +K + GQ VFY Sbjct: 299 AE--PPNNLYYGCKVHFKFQHVKSTTNCQVISIKNDNLLVIIDKPLRALTQGQYAVFYQ- 355 Query: 371 DSNEARVLGGGIIS 384 E LG I+ Sbjct: 356 ---ENECLGSARIT 366 >gi|157109170|ref|XP_001650555.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes aegypti] gi|157109172|ref|XP_001650556.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes aegypti] gi|157109174|ref|XP_001650557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes aegypti] gi|108868469|gb|EAT32694.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes aegypti] gi|108868470|gb|EAT32695.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes aegypti] gi|108868471|gb|EAT32696.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes aegypti] Length = 377 Score = 365 bits (938), Expect = 7e-99, Method: Composition-based stats. Identities = 98/365 (26%), Positives = 169/365 (46%), Gaps = 26/365 (7%) Query: 32 DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91 DS+V A +LK+ G+DV G ++ ++ G C QD DA+++C + + + Sbjct: 14 DSAVTAYMLKQKGFDVRGAFMKNWD---LIDEAGYCSGEQDWLDAQKLCRQLRIPLEQIN 70 Query: 92 YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSR 150 + + + V F Y G TP P + CNR +KF+ R+ +GAD +ATGHY R+ Sbjct: 71 FVKDYWLEVFGSFLKDYDTGITPNPDILCNRHIKFNLFYKHAREKMGADAIATGHYARTN 130 Query: 151 ---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREM 207 D + +D +DQ++FL + + L FP+G M K V+ A E+ Sbjct: 131 FGPFLEKYDEHGSIRLLAGVDDIKDQTFFLSQISAEALRRTMFPIGAMTKAQVKQYAAEV 190 Query: 208 GLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIINYTIG 265 GL+ A K +S ICFV + + D + GD V + G+++G H G+ ++T+G Sbjct: 191 GLEAFARKKESMGICFVGKRSFQDFIAEYID--TKPGDFVDFDTGKVVGTHKGLHHWTVG 248 Query: 266 QRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDGLFEDAVVD 322 Q+ +G + +P FV D N + + V L +Y+ W+ D + D Sbjct: 249 QKAKIGGCL-QPYFVFQKDVNRNVIFVVSGTDHPLLVTDMVYVENPVWIN---KPDRLAD 304 Query: 323 G-FKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 G F+C + + ++ V + + + ++V ++ + GQ VFY + Sbjct: 305 GVFRCQFRFQHTKPLVHCSLIESSEDGNRMFVKLDEPLRAITPGQYAVFYKDE----ECF 360 Query: 379 GGGII 383 G I Sbjct: 361 GSARI 365 >gi|157414371|ref|YP_001481627.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni 81116] gi|172046984|sp|A8FJL3|MNMA_CAMJ8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|157385335|gb|ABV51650.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni 81116] gi|307747016|gb|ADN90286.1| tRNA-specific 2-thiouridylase mnmA [Campylobacter jejuni subsp. jejuni M1] Length = 338 Score = 365 bits (938), Expect = 7e-99, Method: Composition-based stats. Identities = 121/368 (32%), Positives = 194/368 (52%), Gaps = 34/368 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++VAMSGGVDS+V A LK G++VIG ++L+ +++ +V Sbjct: 1 MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPN--------YHEENIKKVEKVA 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + +++ D ++ F+N V +PF +Y G+TP PC CNR +K LL + LG + Sbjct: 53 NFLQIPYHILDLQKDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R + + +D +DQSYFL + ++ L L FPLG+MKKE V Sbjct: 113 LATGHYARLENNL---------IKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163 Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 + A E+ A + +S +ICFV+ Y V+ + + G+++ +G+++G+H G Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQFM-DTKIPGEVLDSSGKVVGKHEG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V EP FV+ ++ +++IVG +E L++ L+ IN D Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFKLKNINLFIDA--- 278 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 C VKIR P V+ +D + + G+ASGQ VFY D + Sbjct: 279 ----KELDCEVKIRYRSKSTPCKVEIYEDKSAKITLKDPVYGLASGQMAVFYDHD----K 330 Query: 377 VLGGGIIS 384 V+ G I Sbjct: 331 VIASGFIE 338 >gi|283955497|ref|ZP_06372992.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni 1336] gi|283792958|gb|EFC31732.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. jejuni 1336] Length = 338 Score = 365 bits (937), Expect = 8e-99, Method: Composition-based stats. Identities = 122/368 (33%), Positives = 194/368 (52%), Gaps = 34/368 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++VAMSGGVDS+V A LK G++VIG ++L+ +++ +V Sbjct: 1 MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPN--------YHEENIKKVEKVA 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + +++ D +E F+N V +PF +Y G+TP PC CNR +K LL + LG + Sbjct: 53 NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R + + +D +DQSYFL + ++ L L FPLG+MKKE V Sbjct: 113 LATGHYARLENNL---------IKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163 Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 + A E+ A + +S +ICFV+ Y V+ + + G+++ +G+++G+H G Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQFM-DTKIPGEVLDSSGKVVGKHEG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V EP FV+ ++ +++IVG +E L++ L+ IN D Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFKLKNINLFIDA--- 278 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 C VKIR P V+ +D + + G+ASGQ VFY D + Sbjct: 279 ----KELDCEVKIRYRSKSTPCKVEIYEDKSAKITLKNPVYGLASGQMAVFYDYD----K 330 Query: 377 VLGGGIIS 384 V+ G I Sbjct: 331 VIASGFIE 338 >gi|270294933|ref|ZP_06201134.1| tRNA methyl transferase [Bacteroides sp. D20] gi|270274180|gb|EFA20041.1| tRNA methyl transferase [Bacteroides sp. D20] Length = 350 Score = 365 bits (937), Expect = 8e-99, Method: Composition-based stats. Identities = 118/370 (31%), Positives = 175/370 (47%), Gaps = 26/370 (7%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 D RV++ MSGG DSSV A L+ GY+V GVT + Y + + + DAR Sbjct: 2 KSDKRVLLGMSGGTDSSVAAMRLQEAGYEVTGVTFRFYEAGDETGY---------LEDAR 52 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + + + H +D E FR+ +I F Y G TP+PC CN +K++ L + + G Sbjct: 53 ALALKLGMKHITYDARELFRSRIIRYFVEEYLRGRTPVPCTVCNNELKWALLAKIADEKG 112 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 ++TGHY+R L G + + D ++DQ++FL+ Q L + P+GD+ K Sbjct: 113 IYWISTGHYVRKVLSGG-----KYYIAPAADKDKDQTFFLWGLKQDILQRMLLPMGDITK 167 Query: 198 ESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD--IVHLNGQILG 254 R A E G +A K DS +CF Y +K L G V G LG Sbjct: 168 NEARSYAAERGFGQVAAKKDSIGVCFCPL-DYRSFLKCEVPETLLPGKGRFVDEKGNFLG 226 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H G YT+GQRRGLG+ + + +FV S+ V++ P SL ++L + N + + Sbjct: 227 WHEGYPFYTVGQRRGLGIHLNKAVFVKETRVESNEVVLAPLSSLYRQEMWLGDWNLVENS 286 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 V+ + VKIR + V +G + V + +A GQA FY D Sbjct: 287 ----RVLGANEVIVKIRYRKQANRCRVTLTVEGLLRVRLIEPLESIAPGQAAAFYDKD-- 340 Query: 374 EARVLGGGII 383 +LGGGII Sbjct: 341 -GYLLGGGII 349 >gi|66546481|ref|XP_624200.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like [Apis mellifera] Length = 395 Score = 365 bits (937), Expect = 8e-99, Method: Composition-based stats. Identities = 99/375 (26%), Positives = 172/375 (45%), Gaps = 21/375 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +++V +SGG+DS+V A LLK GYDV GV ++ ++ + + G C +D A +C Sbjct: 3 KKIIVGISGGIDSAVTAFLLKNKGYDVTGVFMKNWDIKNET---GKCQIDEDKEHAEWIC 59 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR-QLGAD 139 + + ++ + + N + Y G TP P + CN+ +KF + R +L AD Sbjct: 60 KKLKIPFVEVNFVKEYWNNIFCYLTEQYENGYTPNPDILCNKYIKFDQFFNFARTKLQAD 119 Query: 140 VLATGHYIRSRLYVGDDG---KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 +ATGHY ++ + + + DL +DQ++FL QQ L FPLG+ Sbjct: 120 AIATGHYAKTSFGPYLEHFKLNTNVKLLQAKDLGKDQTFFLCQVPQQALRYFMFPLGNYL 179 Query: 197 KESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILG 254 K+ V+ +A E+GLD I K +S ICF+ + + + + + GD + L+ G+++G Sbjct: 180 KKDVKKIAEEIGLDKIVHKKESTGICFIGKRNFQNFISEYISD--KPGDFIDLDNGKVVG 237 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWL 311 +H G +T+GQ LG F+ D S+ +IV +L I W+ Sbjct: 238 KHKGFHYWTVGQNVKLG-GYPIAYFIYKKDIQSNNIIVVKGTNHPALYTDFIITETPYWI 296 Query: 312 GDGLFE-DAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYT 369 E ++ C + + + V +N + + + ++ + GQ V Y Sbjct: 297 SSEPNELNSYYRTMCCNFRFQHRDSLISCIVHKNLRNELMIRIDQPLRSLTEGQFVVLYK 356 Query: 370 SDSNEARVLGGGIIS 384 + LG IS Sbjct: 357 GE----ECLGSAEIS 367 >gi|258593690|emb|CBE70031.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [NC10 bacterium 'Dutch sediment'] Length = 357 Score = 364 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 129/328 (39%), Positives = 182/328 (55%), Gaps = 12/328 (3%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS--KRKGSCCAGQDVYDARRVCDTIN 84 MSGGVDS+V AALL GY+V+G++L+L + +R CC+ +D DAR V + Sbjct: 1 MSGGVDSAVAAALLIEQGYEVVGISLKLLPEGAGNGSERADRCCSVKDAEDARLVAAQLG 60 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + +Y+ +YE +F+ VI F +Y G TP PCV CN +KF LL LGA LATG Sbjct: 61 IPYYILNYESQFQREVIREFTEAYLGGLTPNPCVRCNELIKFGSLLQQALGLGAKRLATG 120 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY R +D + R ++ R +D ERDQSYFL++ TQ+QL + FP+G M K+ VR+ A Sbjct: 121 HYARVER---EDMRGRYLLRRGVDEERDQSYFLYSLTQEQLAGICFPVGHMTKDQVRERA 177 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI 264 GL IA K+DSQD+CFV Y ++ G I G+ILG+H G+ YT+ Sbjct: 178 AAYGLRIAAKADSQDLCFVGH-DYRTFLQERCGDRLRPGPITDRTGRILGQHEGVALYTV 236 Query: 265 GQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGF 324 GQR GL +A G P +V+ LD ++ V+VG R+ L +N + D + Sbjct: 237 GQRNGLRLASG-PFYVIRLDPQTNAVVVGRRDELLRREFVAERLNLVA----YDRLTAER 291 Query: 325 KCFVKIRSSQDPVPVFVQRNDD-GVYVD 351 VK+RS Q +P + D + V Sbjct: 292 PVLVKVRSRQAAMPATILPLGDSRIRVR 319 >gi|315453196|ref|YP_004073466.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter felis ATCC 49179] gi|315132248|emb|CBY82876.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter felis ATCC 49179] Length = 346 Score = 364 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 126/372 (33%), Positives = 187/372 (50%), Gaps = 32/372 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+V V MSGGVDSS A LL++ G++++GV L+L+ + C + V Sbjct: 1 MKVAVLMSGGVDSSYSAYLLQQAGHELLGVYLKLHGKEEKHALYIRNC--------QEVA 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +N+ V D + F+ V F +Y G+TP PC CN +KF L G + Sbjct: 53 KFLNIPFEVVDLQAEFKQGVYDAFVQAYEQGQTPNPCALCNPLMKFGLGLEFALNQGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R G + D +DQSYFL+A Q+ + L FPLGD+ K + Sbjct: 113 IATGHYARLEKVGG-----VLRIKEAKDTSKDQSYFLYALPQKAIDRLLFPLGDLLKSEI 167 Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 + LA E +G D+ +SQ+ICFV+ Y D +K+ + EG + +L G+++G H Sbjct: 168 KPLALEKMPFLG-DLQTYKESQEICFVE-TNYIDTLKKHVQ-VDQEGIVRNLKGEVVGTH 224 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G ++YTIG+R+G + EP FVV +D + +IVG +E+L + + R Sbjct: 225 RGYMHYTIGKRKGFTIKGAHEPHFVVGIDALKNEIIVGQKEALAICTLEARN-------K 277 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + + VK+R P ++ DD + FE GVA GQA V Y D Sbjct: 278 SLPSNFKEGEYLVKVRYRSTPTSAHIRLEDDTIRARFENPVYGVALGQALVIYDQD---- 333 Query: 376 RVLGGGIISGSK 387 RVLGGG+I+ S Sbjct: 334 RVLGGGVITKSY 345 >gi|168035636|ref|XP_001770315.1| predicted protein [Physcomitrella patens subsp. patens] gi|162678346|gb|EDQ64805.1| predicted protein [Physcomitrella patens subsp. patens] Length = 376 Score = 364 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 116/385 (30%), Positives = 167/385 (43%), Gaps = 32/385 (8%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 + V +SGGVDSSV LL G+ L+++ C D+ +A+ VCD Sbjct: 3 IAVLLSGGVDSSVALRLLCAAGHSCTAYYLKIWFQEDFENFWSECPWEDDLKNAQAVCDE 62 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + V V + + + N V+ S AG TP P + CN VKF L + D +A Sbjct: 63 VGVELRVVHFTDEYWNLVVSHSISEIQAGRTPNPDILCNTCVKFGAFLDHIKDEQFDRVA 122 Query: 143 TGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +GHY R R D + R + D +DQ+YFL TQ+QL L FPLG K V Sbjct: 123 SGHYARIRKIYNCDTGAEERTELLLCPDEVKDQTYFLSHLTQEQLSRLIFPLGGFTKAEV 182 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNGI 259 R LA MGL ++ DSQ ICF+ + K+ D + + EG ++ G++LG H G Sbjct: 183 RQLAEVMGLYNKNRKDSQGICFLGKVKFSDFIAKHLGES--EGRMLEAETGELLGLHKGF 240 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGDGLF 316 YT+GQR+GL + G P FVV D ++ V V E + NW Sbjct: 241 WFYTMGQRKGLRFSNG-PWFVVAKDIVNNVVFVSRHYFSEDKRRRSFRVDSFNWFSGFPP 299 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDD---------------GVYVDFEKSEVGVAS 361 D G +C K+R + D V+ + + G+A Sbjct: 300 ADN--SGLQC--KVRHGPRFYTCSLDIQTDSTDSEAVTKESKSLTSAVVNLNEDDQGLAP 355 Query: 362 GQACVFYTSDSNEARVLGGGIISGS 386 GQ FY + LG +I+ + Sbjct: 356 GQYAAFYQN----GVCLGSAVITET 376 >gi|160903153|ref|YP_001568734.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Petrotoga mobilis SJ95] gi|205816886|sp|A9BIS3|MNMA_PETMO RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|160360797|gb|ABX32411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Petrotoga mobilis SJ95] Length = 367 Score = 364 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 117/372 (31%), Positives = 185/372 (49%), Gaps = 21/372 (5%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS---KRKGSCCAGQDVYD 75 + +V++ MSGGVDSSV A LLK Y VIG+ + + S ++K CC+ D D Sbjct: 2 SNKKVLMLMSGGVDSSVAAYLLKEQNYHVIGLHFKTVSDVVFSLIPEKKKVCCSPSDTQD 61 Query: 76 ARRVCDTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134 A ++ D +++ + D ++ F+ +I F +Y G+TP PC+ CNR KF L + Sbjct: 62 ALKIADKLDLDDFQIVDIKKEFKEKIIDYFIKTYKEGKTPNPCMLCNRFFKFGKALEIAH 121 Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194 GAD +++GHY+ + I+ + +D +DQSYFL + L L FPLG+ Sbjct: 122 SYGADWVSSGHYLIKEYS---NKYSTYIIKKGVDQYKDQSYFLSYIDKNTLPKLHFPLGN 178 Query: 195 MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILG 254 M K +RD+A ++GL +A+K DSQ++CF+ Y +K N EG + L G +G Sbjct: 179 MYKVEIRDIANKIGLSVANKPDSQELCFIPDNDYRRFLKE-NGVTTEEGKVYDLEGNEIG 237 Query: 255 RHNGIINYTIGQRRGLGVAMGE--PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 H G +NYTIGQR G+ L V + + +IV P E + + ++ +N+ Sbjct: 238 THTGYMNYTIGQRSGISYYKNANVKLHVYKIFPQKNVLIVAPTEEMYSKELIVQNVNFFV 297 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSD 371 D + F ++R + P V++ D + V F++ V GQ Y Sbjct: 298 DF-------KEIEGFCRVRKKSEEKPAVVKKIADHTLKVSFKEPIFAVTPGQFATIYD-- 348 Query: 372 SNEARVLGGGII 383 VL G+I Sbjct: 349 -ESGVVLASGVI 359 >gi|153951834|ref|YP_001397317.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. doylei 269.97] gi|166234847|sp|A7H1D7|MNMA_CAMJD RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|152939280|gb|ABS44021.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter jejuni subsp. doylei 269.97] Length = 338 Score = 364 bits (936), Expect = 1e-98, Method: Composition-based stats. Identities = 122/368 (33%), Positives = 194/368 (52%), Gaps = 34/368 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++VAMSGGVDS+V A LK G++VIG ++L+ +++ +V Sbjct: 1 MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPN--------YHEENIKKVEKVA 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + +++ D +E F+N V +PF +Y G+TP PC CNR +K LL + LG + Sbjct: 53 NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKNLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R + + +D +DQSYFL + ++ L L FPLG+MKKE V Sbjct: 113 LATGHYARLENNL---------IKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163 Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 + A E+ A + +S +ICFV+ Y V+ + + G+++ +G+++G+H G Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQFM-DTKIPGEVLDSSGKVVGKHEG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V EP FV+ ++ +++IVG +E L++ L+ IN D Sbjct: 222 YMHYTIGKRRGFEVRGTHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLFIDA--- 278 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 C VKIR P V+ +D + + G+ASGQ VFY D + Sbjct: 279 ----KELDCEVKIRYRSKSTPCKVEIYEDKSAKITLKDPVYGLASGQMAVFYNHD----K 330 Query: 377 VLGGGIIS 384 V+ G I Sbjct: 331 VIASGFIE 338 >gi|284925349|gb|ADC27701.1| tRNA-specific 2-thiouridylase MnmA [Campylobacter jejuni subsp. jejuni IA3902] Length = 338 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 122/368 (33%), Positives = 194/368 (52%), Gaps = 34/368 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++VAMSGGVDS+V A LK G++VIG ++L+ +++ +V Sbjct: 1 MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPN--------YHEENIKKVEKVA 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + +++ D +E F+N V +PF +Y G+TP PC CNR +K LL + LG + Sbjct: 53 NFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLLEFAKSLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R + + +D +DQSYFL + ++ L L FPLG+MKKE V Sbjct: 113 LATGHYARLENNL---------IKTAVDESKDQSYFLASADKEALKYLIFPLGEMKKEDV 163 Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 + A E+ A + +S +ICFV+ Y V+ + + G+++ +G+++G+H G Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVEDT-YVQVLDQFM-DTKIPGEVLDSSGKVVGKHEG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V EP FV+ ++ +++IVG +E L++ L+ IN D Sbjct: 222 YMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLFIDA--- 278 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 C VKIR P V+ +D + + G+ASGQ VFY D + Sbjct: 279 ----KELVCEVKIRYRSKSTPCKVEIYEDKSAKITLKDPVYGLASGQMAVFYDHD----K 330 Query: 377 VLGGGIIS 384 V+ G I Sbjct: 331 VIASGFIE 338 >gi|157736745|ref|YP_001489428.1| tRNA-specific 2-thiouridylase MnmA [Arcobacter butzleri RM4018] gi|205810156|sp|A8ES35|MNMA1_ARCB4 RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 gi|157698599|gb|ABV66759.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Arcobacter butzleri RM4018] Length = 345 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 133/374 (35%), Positives = 198/374 (52%), Gaps = 35/374 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 +V+V MSGG+DSSV A +L+ +GY+V G+ L+L+N +++ Sbjct: 2 SKKKVMVGMSGGIDSSVTAYMLQNEGYEVEGIYLKLHNRTDG-------YHEKNLGYIED 54 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V +N+ +Y+ D ++F V F SY G TP PCV CNR +KF +L +Q GA Sbjct: 55 VAKFLNIKYYILDLADKFSKEVYDYFVDSYLTGTTPNPCVKCNRQIKFGAMLDFAKQHGA 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 LATGHY ++ DGK D +DQSYFL + L + FPL KKE Sbjct: 115 SYLATGHYAKT------DGKFFYE---ADDKTKDQSYFLSQVDKDALKYMMFPLSTYKKE 165 Query: 199 SVRDLAREMGLD---IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 + ++ + I +KS+SQ+ICFV+ Y DVVK+ +A I EGD++ NG+++G+ Sbjct: 166 DIVKFGAKLDVAYKKITEKSESQEICFVETV-YTDVVKK-HANIDQEGDVLDENGKVVGK 223 Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN-WLGD 313 H G +YTIG+RRG V EP FV L+ + ++VG +E+LEV+ + +N ++ D Sbjct: 224 HKGFAHYTIGKRRGFTVKGAQEPHFVTKLNPKDNTIVVGKKEALEVNEVVGNNLNMFIDD 283 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F C VK+R P VQ D+ Y+ ++ GVA GQ VFY + Sbjct: 284 T--------KFSCNVKLRYRSVSTPCEVQIKDEKAYITLKEPVYGVAKGQLAVFYHEE-- 333 Query: 374 EARVLGGGIISGSK 387 +V+G I +K Sbjct: 334 --KVIGSAWIESTK 345 >gi|194912221|ref|XP_001982459.1| GG12823 [Drosophila erecta] gi|190648135|gb|EDV45428.1| GG12823 [Drosophila erecta] Length = 411 Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats. Identities = 106/392 (27%), Positives = 176/392 (44%), Gaps = 28/392 (7%) Query: 32 DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91 DS+V A LL G++V+GV ++ ++ G C D+ DA C + V + Sbjct: 14 DSAVSAHLLAERGFNVLGVFMRNWDEMDEV---GRCSGEADLKDAEWACRQLGVELRQVN 70 Query: 92 YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSR 150 Y + AV F Y G TP P + CNR +KF + LG D +ATGHY + Sbjct: 71 YVREYWTAVFSQFLDDYQLGLTPNPDILCNRHIKFDLFHKHALENLGYDAVATGHYAGNS 130 Query: 151 L---YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREM 207 L G + P D +DQ++FL + L FPLGD +K V+DLA+++ Sbjct: 131 LGNFLEGTASNDEARLLIPADTFKDQTFFLAGIPHKALQRTMFPLGDWQKSQVKDLAKKI 190 Query: 208 GLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIINYTIG 265 GL +A+K +S ICFV + + D ++ ++ G + ++ G ++G H GI +T+G Sbjct: 191 GLQRLANKKESTGICFVGKRNFKDFIQEYI--VSKTGPFLDIDSGAVVGHHEGIHQWTVG 248 Query: 266 QRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDGLFE-DAVV 321 QR L + +P FV + S+ + V +L I + NWL + + Sbjct: 249 QRCRLSSFL-QPYFVARKEAASNTIYVAAGHNHPALLSTHIDVDPPNWLCSKSQKMLSDT 307 Query: 322 DGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 +C + + ++ V ++ + + +V+ + + GQ VFY N+ LG Sbjct: 308 GSLRCRFRFQHTKPLVVCHLKISPSNSFHVELDAPLRAITPGQYAVFY----NDTACLGS 363 Query: 381 GII-------SGSKRSDAVEESLLSVIGDEFP 405 I ++ A +L+S E P Sbjct: 364 ARILSANPLKKDAQTQQAHAANLVSSSTGEIP 395 >gi|194768511|ref|XP_001966355.1| GF22123 [Drosophila ananassae] gi|190617119|gb|EDV32643.1| GF22123 [Drosophila ananassae] Length = 388 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 108/385 (28%), Positives = 174/385 (45%), Gaps = 23/385 (5%) Query: 32 DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91 DS+V A LLK GY V+GV ++ ++ G C D+ DA C + V + Sbjct: 14 DSAVTAHLLKERGYSVLGVFMRNWDE---FDEAGRCSGEADLKDAEWACRRLGVELRQVN 70 Query: 92 YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSR 150 Y + AV F Y G TP P + CNR +KF + L D +ATGHY R+ Sbjct: 71 YVREYWTAVFSQFLEDYQQGLTPNPDILCNRHIKFDLFHRHCLESLNYDAVATGHYARNS 130 Query: 151 ----LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 L + + P D +DQ++FL ++ L FPLGD+ K V+ LA + Sbjct: 131 LGNFLEKATGAEEEARLLIPADTFKDQTFFLAGIARKALQRTMFPLGDLHKAEVKQLAAK 190 Query: 207 MGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIINYTI 264 +GL +A K +S ICFV + + D ++ + +G V ++ G ++G H GI +T+ Sbjct: 191 IGLQRLASKRESTGICFVGKRNFKDFIREYI--TSRDGHFVDVDSGAVVGNHEGIHQWTV 248 Query: 265 GQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDGLFEDAVV 321 GQR L + +P FV + +S+ + V +L R+++ NWL Sbjct: 249 GQRCRLSSFL-QPYFVARKEASSNTIYVAAGHDHPALLSTRMHIDPPNWLCGESQRRCFS 307 Query: 322 DG-FKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 +G +C + + ++ V V+ + + V+ + + GQ VFY E LG Sbjct: 308 EGVLRCRFRFQHTKPLVDCCVRLSPANQFQVELDAPLRAITPGQYAVFYD----ETACLG 363 Query: 380 GGIISGSKRSDAVEESLLSVIGDEF 404 I ++ +E L +G F Sbjct: 364 SARILTAE-PLRMEAEKLKGLGSSF 387 >gi|262203144|ref|YP_003274352.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Gordonia bronchialis DSM 43247] gi|262086491|gb|ACY22459.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Gordonia bronchialis DSM 43247] Length = 373 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 145/386 (37%), Positives = 198/386 (51%), Gaps = 26/386 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRV 79 MRV+ AMSGGVDS+V AA G+DV+GV L L + A + CC+ +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVEAGHDVVGVHLALSTAPGALRTGSRGCCSREDASDARRA 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + YV+D+ +RF++ VI F ++YAAG+TP PC+ CN VKF+ L LG D Sbjct: 61 ADVLGIPFYVWDFADRFKDDVIDEFVAAYAAGQTPNPCLTCNEKVKFAALAEKAVALGFD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 LATGHY R DG+ + R +D ++DQSY L T++QL FP+GD K Sbjct: 121 ALATGHYARLA-----DGE----LRRAVDADKDQSYVLAVLTRKQLGRAMFPVGDTPKPE 171 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNG 258 +R A GL +A+K DS DICF+ G + G +V G L H G Sbjct: 172 IRAEAARRGLSVANKPDSHDICFIPSGDTRAFLGARIGL--RPGAVVDAATGDRLADHEG 229 Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 + +TIGQR+GLG+ A G+P +V +D +S V VG LEV I R W Sbjct: 230 VHGFTIGQRKGLGIDAPAADGKPRYVTDIDPDSGTVTVGTAADLEVWSISARRAVWTSGH 289 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD----GVYVDFEKSEVGVASGQACVFYTS 370 + V C V++R+ P D G+ ++ + GVA GQA V Y Sbjct: 290 TPDGPV----DCVVQVRAHGGLAPARATPVDRDGEPGIEIELTEPLTGVARGQAAVLYLP 345 Query: 371 DSN-EARVLGGGIISGSKRSDAVEES 395 D+ VLG G I+ + AV S Sbjct: 346 DAQRGDLVLGCGRIAATSARGAVAPS 371 >gi|325299477|ref|YP_004259394.1| tRNA-specific 2-thiouridylase mnmA [Bacteroides salanitronis DSM 18170] gi|324319030|gb|ADY36921.1| tRNA-specific 2-thiouridylase mnmA [Bacteroides salanitronis DSM 18170] Length = 356 Score = 364 bits (934), Expect = 2e-98, Method: Composition-based stats. Identities = 125/374 (33%), Positives = 179/374 (47%), Gaps = 26/374 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 + KD RV++ MSGG DSSV A LL+ GY+V GVT + Y + + D Sbjct: 2 EKEKDKRVLLGMSGGTDSSVAAILLQDAGYEVTGVTFRFYEKEGDTAY---------LDD 52 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 AR +C +++ H V+D E FR +I F Y G TP+PC CN +K+ L + + Sbjct: 53 ARELCSRLHIPHIVYDVREVFRKHIITYFIDEYLKGRTPVPCTLCNNRLKWPLLKRLADE 112 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 +A+GHY++ R R + + D ++DQS+FL+ Q + + PLG++ Sbjct: 113 REIPFIASGHYVQKRFI-----GERWHIVQGADPDKDQSFFLWGLPQDIIARMVLPLGNL 167 Query: 196 KKESVRDLAREMG-LDIADKSDSQDICFVQQGKYFDVVKRIN-AGIALEGDIVHLNGQIL 253 K VR++A E G L +A K DS +CF G Y ++R AG + G I + Sbjct: 168 TKTRVREIASERGFLKVASKRDSLGVCFCP-GDYRTYLRRHTQAGAIVPGPIFDERRNYM 226 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLREINWLG 312 G H G YTIGQRRGLGV + LFV + + VI+ +LE YL + Sbjct: 227 GTHEGYPFYTIGQRRGLGVYRNKALFVKEIIPEENAVILADDLRALEHTAFYLSHWHL-- 284 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSD 371 E + + VKIR + V D+ + V + +A GQA FY D Sbjct: 285 -PAPEVVLGSQAELIVKIRYRKQANRCSVVLTPDNRLQVRLHEPLASIACGQAAAFYRGD 343 Query: 372 SNEARVLGGGIISG 385 VLGGGII Sbjct: 344 I----VLGGGIIDR 353 >gi|224536736|ref|ZP_03677275.1| hypothetical protein BACCELL_01612 [Bacteroides cellulosilyticus DSM 14838] gi|224521652|gb|EEF90757.1| hypothetical protein BACCELL_01612 [Bacteroides cellulosilyticus DSM 14838] Length = 350 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 113/353 (32%), Positives = 172/353 (48%), Gaps = 23/353 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RV++ MSGG DSSV A LL+ GY+V GVT + Y+S + + DAR + Sbjct: 5 KRVLLGMSGGTDSSVAAMLLQEAGYEVTGVTFRFYDSE---------GFEESLDDARNLA 55 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +N+ H ++D E FR +I F Y + TP+PC CN +K+ L + ++G Sbjct: 56 SRLNIPHIIYDARELFRERIIRYFVDEYLSAHTPVPCTLCNNELKWPLLAKIADEMGIYW 115 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ++TGHY+R G + D ++DQ++FL+ Q L + P+GD K V Sbjct: 116 ISTGHYVRKVFRDG-----YYFIAPAADRDKDQTFFLWGLQQNILERMLLPMGDWTKNEV 170 Query: 201 RDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGD--IVHLNGQILGRHN 257 R A + G + A K DS +CF Y ++R AL G + +G LG H Sbjct: 171 RAYAAKRGFERTATKKDSLGVCFCPM-DYRSFLQREVPQDALPGKGQFLDESGTFLGWHE 229 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 G YTIGQRRGLG+ + P+FV + K + VI+ P SL + L++ N + Sbjct: 230 GYPFYTIGQRRGLGIHLNRPVFVKEIHKERNEVILAPLASLYKEEMLLKDWNIVDTS--- 286 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 +++ V+IR + V D+ ++V + +ASGQA FY Sbjct: 287 -RLLNSEDVIVRIRYRKQANHCTVSITDENLLHVLLREPLESIASGQAAAFYD 338 >gi|290999445|ref|XP_002682290.1| predicted protein [Naegleria gruberi] gi|284095917|gb|EFC49546.1| predicted protein [Naegleria gruberi] Length = 408 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 123/392 (31%), Positives = 199/392 (50%), Gaps = 34/392 (8%) Query: 15 DKNPK-DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 +K P+ +R+VV MSGGVDSS+ A LLK G+DV+ + ++ ++S + + C +D Sbjct: 25 EKKPRGQIRIVVGMSGGVDSSLTACLLKEFGFDVVSLHMRNWDSSEEDPSREHCTFTKDW 84 Query: 74 YDARRVCDTINVSH-----YVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 D + +C+T + H + ++ +++ N V Y+ G+TP P + CN+ +KF Sbjct: 85 NDVKVICETFGIKHVGSSFHPVEFIDQYWNDVFEKLLDGYSIGQTPNPDLFCNKFIKFDA 144 Query: 129 LLSVT-RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 +L+ + GAD +ATGHY + Y + + R +D +DQSYFL ++ Sbjct: 145 MLNYAIEKGGADYIATGHYAQLG-YSDNGETSNTHLLRAIDHSKDQSYFLSFVNKKAFEK 203 Query: 188 LRFPLGD-MKKESVRDLAREM---GLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEG 243 FPLG +KKE VR LAR+ ++ + DS ICF+ + K+ D + + + +G Sbjct: 204 SLFPLGQFLKKEEVRVLARDHFKFPNELWGRKDSVGICFIGKRKFKDFLSKYID--SSKG 261 Query: 244 DIVHLNGQ--ILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESL 298 +IV + + ILG H+G YTIGQ L M E FV D ++ + V P SL Sbjct: 262 NIVSIEDKTTILGEHDGASFYTIGQGMCLS-GMKEKWFVCEKDFKNNILYVCPGNNHPSL 320 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQ-DPVPVFVQRNDDG--VYVDF--- 352 + +WL + + + + FVK+R +Q +P V ++D + Sbjct: 321 LKSSFTISNCHWL------ENIDNSKEYFVKVRYNQREPFRCKVSYSNDSSLCDITLADS 374 Query: 353 EKSEVGVASGQACVFYTSDSN--EARVLGGGI 382 E+ G+ASGQ V Y S+S E +GGGI Sbjct: 375 EEPARGIASGQIAVLYDSNSQFSEQICVGGGI 406 >gi|195469645|ref|XP_002099747.1| GE16655 [Drosophila yakuba] gi|194187271|gb|EDX00855.1| GE16655 [Drosophila yakuba] Length = 388 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 103/366 (28%), Positives = 168/366 (45%), Gaps = 21/366 (5%) Query: 32 DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91 DS+V A LL G++V+GV ++ ++ G C D+ DA C + V + Sbjct: 14 DSAVSAHLLAERGFNVLGVFMRNWDE---VDEMGRCSGEADLKDAEWACRQLGVELRQVN 70 Query: 92 YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSR 150 Y + AV F Y G TP P + CNR +KF + LG D +ATGHY R+ Sbjct: 71 YVREYWTAVFSQFLDDYQLGLTPNPDILCNRHIKFDLFHKHALENLGYDAVATGHYARNS 130 Query: 151 LYVGDDG---KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREM 207 L +G + P D +DQ++FL Q+ L FPLGD +K V++LA+++ Sbjct: 131 LGNFLEGIASNNEARLLIPADTFKDQTFFLAGIPQKALQRTMFPLGDFQKSQVKELAKKI 190 Query: 208 GLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIINYTIG 265 GL +A+K +S ICFV + + D ++ + G + ++ G ++G H GI +T+G Sbjct: 191 GLQRLANKKESTGICFVGKRNFKDFIQEYI--TSKTGPFLDIDSGAVVGHHEGIHQWTVG 248 Query: 266 QRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDGLFE-DAVV 321 QR L + +P FV + S+ + V +L I + NWL A Sbjct: 249 QRCRLSSFL-QPYFVARKEAASNTIYVAAGHNHPALLSTHIDVDPPNWLCSKSQRILADT 307 Query: 322 DGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 C + + ++ V ++ + ++ +V+ E + GQ VFY+ LG Sbjct: 308 GSLSCRFRFQHTKPLVGCHLRLSPENSFHVELEAPLRAITPGQYAVFYSD----TACLGS 363 Query: 381 GIISGS 386 I + Sbjct: 364 ARILSA 369 >gi|313673847|ref|YP_004051958.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Calditerrivibrio nitroreducens DSM 19672] gi|312940603|gb|ADR19795.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Calditerrivibrio nitroreducens DSM 19672] Length = 343 Score = 363 bits (933), Expect = 3e-98, Method: Composition-based stats. Identities = 124/367 (33%), Positives = 188/367 (51%), Gaps = 29/367 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RVVVAMSGGVDSSV A +LK+ GYDV+GVT++++ + + + DA V Sbjct: 2 KRVVVAMSGGVDSSVTAYILKKMGYDVVGVTIKMFEN-----------QEKYLKDAEAVA 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +++ + D F+ VI F +SY G TP PC CNR KF L + + GAD Sbjct: 51 KKLDIKWEMIDKTIEFQETVISYFINSYRKGLTPNPCAYCNRNAKFFFLYNEMLKYGADH 110 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY G + + + + ++DQSY+L L L FPLG M K V Sbjct: 111 IATGHYADIVEVDG-----HKYIKKSTNTKKDQSYYLALIRDDLLDKLLFPLGMMDKSEV 165 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKR-INAGIALEGDIVHLNGQILGRHNGI 259 R +A +GL++A+K DSQ++CF++ G Y D +K+ I+ +G ++ N +I+ +H GI Sbjct: 166 RKIASSIGLEVAEKKDSQEVCFLEGGDYRDYLKKMIDPNKIKKGYFIYNNERIM-KHEGI 224 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 YT+GQRRGLG+ +PL+V ++D + + + + L NW G + Sbjct: 225 EFYTVGQRRGLGIGYHKPLYVQHIDPVTFDIHLTDENRSGYRGVRLNNCNWFG------S 278 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 F+ ++R V+ DD + F++ + A GQ Y D +L Sbjct: 279 PKKLFRAQARLRYRMKDANTLVEILPDDRADLLFDEPQPFPAPGQVAAIYNKDI----LL 334 Query: 379 GGGIISG 385 GGG I G Sbjct: 335 GGGFIEG 341 >gi|157117360|ref|XP_001658729.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes aegypti] gi|108876095|gb|EAT40320.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Aedes aegypti] Length = 377 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 98/365 (26%), Positives = 169/365 (46%), Gaps = 26/365 (7%) Query: 32 DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91 DS+V A +LK+ G+DV G ++ ++ G C QD DA+++C + + + Sbjct: 14 DSAVTAYMLKQKGFDVRGACMKNWD---LIDEAGYCSGEQDWLDAQKLCRQLRIPLEQIN 70 Query: 92 YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSR 150 + + + V F Y G TP P + CNR +KF+ R+ +GAD +ATGHY R+ Sbjct: 71 FVKDYWLEVFGSFLKDYDTGITPNPDILCNRHIKFNLFYKHAREKMGADAIATGHYARTN 130 Query: 151 ---LYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREM 207 D + +D +DQ++FL + + L FP+G M K V+ A E+ Sbjct: 131 FGPFLEKYDEHGPIRLLAGVDDIKDQTFFLSQISAEALRRTMFPIGAMTKAQVKQYAAEV 190 Query: 208 GLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIINYTIG 265 GL+ A K +S ICFV + + D + GD V + G+++G H G+ ++T+G Sbjct: 191 GLEAFARKKESMGICFVGKRSFQDFIAEYID--TKPGDFVDFDTGKVVGTHKGLHHWTVG 248 Query: 266 QRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREINWLGDGLFEDAVVD 322 Q+ +G + +P FV D N + + V L +Y+ W+ D + D Sbjct: 249 QKAKIGGCL-QPYFVFQKDVNRNVIFVVSGTDHPLLVTDMVYVENPVWIN---KPDRLAD 304 Query: 323 G-FKCFVKIRSSQDPVPVFV---QRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 G F+C + + ++ V + + + ++V ++ + GQ VFY + Sbjct: 305 GVFRCQFRFQHTKPLVHCSLIESSEDGNRMFVKLDEPLRAITPGQYAVFYKDE----ECF 360 Query: 379 GGGII 383 G I Sbjct: 361 GSARI 365 >gi|325003016|ref|ZP_08124128.1| tRNA-specific 2-thiouridylase MnmA [Pseudonocardia sp. P1] Length = 366 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 139/378 (36%), Positives = 193/378 (51%), Gaps = 25/378 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRV 79 MRV+ AMSGGVDS+V AA G+DV+GV L L +R A CC+ +D DA R Sbjct: 1 MRVLAAMSGGVDSAVAAARAVAAGHDVVGVHLALSRTRDAMRSGSRGCCSKEDSADAARA 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + +YV+D E F V+ F ++YAAGETP PC+ CN +KF+ +L LG D Sbjct: 61 ADVLGIPYYVWDLSEEFARDVVDDFVAAYAAGETPNPCLRCNEKIKFAAVLDKALALGFD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 + TGHY R V + R D ++DQSY L QL FP+GD K Sbjct: 121 AVCTGHYARLDPAV-------PSLRRSADADKDQSYVLAVLRADQLRHAMFPVGDTPKPE 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNG 258 +R A +GL +A K DS DICF+ G ++ + G++V G +LG H+G Sbjct: 174 IRAEAERLGLRVAGKPDSHDICFIPTGDTQGFLRERLG--SQPGELVDAGTGDVLGSHDG 231 Query: 259 IINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 + +T+GQR+GLG+ A G P +V+ ++ S V VGP +L+V I R W G Sbjct: 232 VHGFTVGQRKGLGIDRPAADGRPRYVLGIEPVSGTVRVGPESALDVSGITARSPVWTSGG 291 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRND------DGVYVDFEKSEVGVASGQACVFY 368 A F C V++R+ P V + DGV + + GVA GQA FY Sbjct: 292 ----APDGPFGCVVQVRAHGGIAPAEVTPSGRGDDGVDGVEIALAEPLRGVAPGQAVAFY 347 Query: 369 TSDSNEARVLGGGIISGS 386 D + VLG I+ + Sbjct: 348 RPDDDGDVVLGSATITAT 365 >gi|4836940|gb|AAD30642.1|AC006085_15 Unknown protein [Arabidopsis thaliana] gi|119935887|gb|ABM06024.1| At1g51310 [Arabidopsis thaliana] Length = 421 Score = 362 bits (931), Expect = 4e-98, Method: Composition-based stats. Identities = 111/373 (29%), Positives = 164/373 (43%), Gaps = 17/373 (4%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 K +RV V +SGGVDSSV LL G+ L+++ C D+ A Sbjct: 2 PEKPLRVAVLLSGGVDSSVALRLLHAAGHSCTAFYLKIWFQEGFENFWNQCPWEDDLKYA 61 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 + VC+ ++V V + + V+ Y G TP P V CN +KF + + Sbjct: 62 KHVCEQVDVPLEVVHLTDEYWERVVSYIIEEYRCGRTPNPDVLCNTRIKFGAFMDAISDM 121 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 D + +GHY + D ++ D+ +DQ+YFL +Q QL L FPLG +K Sbjct: 122 EYDYVGSGHYAKVVHPPADQNDASSVLELSQDMVKDQTYFLSHLSQTQLKRLLFPLGCVK 181 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGR 255 K+ VR LA + L D+ DSQ ICF+ + K+ D V R +EG I+ +G LG Sbjct: 182 KDEVRKLATQFDLPNKDRKDSQGICFLGKIKFSDFVCRHIGE--MEGIILEAESGDFLGN 239 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE---SLEVHRIYLREINWLG 312 H G YTIGQR+GL + G P +VV D ++ V V + + W Sbjct: 240 HRGFWFYTIGQRQGLRLPGG-PWYVVEKDTKNNVVFVSRNYYSIDKRRRIFRVGSLRWNS 298 Query: 313 DGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--VYVDFEKSEVGVASGQACVFYTS 370 V +C K+R + DG V ++ + G+A+GQ FY Sbjct: 299 GKP--SGKVRELRC--KVRHGPGFYSCSFEMEGDGDVAVVHLDEDDQGLAAGQFAAFYEG 354 Query: 371 DSNEARVLGGGII 383 +G G+I Sbjct: 355 ----TTCIGSGVI 363 >gi|325269460|ref|ZP_08136077.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella multiformis DSM 16608] gi|324988381|gb|EGC20347.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella multiformis DSM 16608] Length = 360 Score = 362 bits (931), Expect = 5e-98, Method: Composition-based stats. Identities = 116/371 (31%), Positives = 167/371 (45%), Gaps = 23/371 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD R+ V +SGGVDSSVV L R G +++ K + C + +D+ A Sbjct: 7 KDKRIAVLLSGGVDSSVVVYELARLGLHPDCFYIRI---GPEEKEEWDCSSEEDMEMATA 63 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V + D + + N V AG TP P V CNR +KF G Sbjct: 64 VAHRFGCRLQIVDCHKEYWNQVTRYTMEKVKAGFTPNPDVMCNRLIKFGAF-DEKMGHGY 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ATGHY ++ G R+ + D +DQ+ FL QL FP+G +K+ Sbjct: 123 DLIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIYDWQLKKAVFPIGHYEKD 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR +A + L A + DSQ ICF+ Y + V+R GDI+ L G+ +G H Sbjct: 178 EVRRIAEQEHLINAHRKDSQGICFLGNIDYNEYVRRYLGE--QPGDIIELETGKKIGEHR 235 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314 G+ +TIGQR+GLG+ G P FVV D + + V L + ++L +G Sbjct: 236 GLWFHTIGQRKGLGLGGG-PWFVVRKDVVQNILYVSHGYDPETAYKSDFPLHDFHYLTEG 294 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + K KIR + + P V++ DG + + GVA GQ CV Y D Sbjct: 295 VTGLPE----KITFKIRHTPEYHPATVEQLPDGKSIIHSAEPIHGVAPGQFCVVY--DEC 348 Query: 374 EARVLGGGIIS 384 R G G I+ Sbjct: 349 HHRCYGSGEIA 359 >gi|320096111|ref|ZP_08027710.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] gi|319976950|gb|EFW08694.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinomyces sp. oral taxon 178 str. F0338] Length = 515 Score = 362 bits (931), Expect = 5e-98, Method: Composition-based stats. Identities = 144/387 (37%), Positives = 197/387 (50%), Gaps = 25/387 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRV 79 MRV+ A+SGGVDS+V AA G+DV+GV + L + + CC+ +D DA R Sbjct: 142 MRVLAALSGGVDSAVAAAKAVEAGHDVVGVHMALSSQPAQCRIGSRGCCSVEDAGDAARA 201 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 +TI + YV+D E F VI F + Y AG TP PCV CN VKF +L R LG D Sbjct: 202 AETIGIPFYVWDLAEEFEQTVITDFIAQYRAGRTPNPCVRCNEFVKFRELADRARALGFD 261 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KE 198 + TGHY +G++ + R D +DQSY L +L + PLG K Sbjct: 262 AVCTGHYAAIV-----EGEQGPELHRGADAAKDQSYVLAVMGPDELRRVVLPLGGAPSKA 316 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR A +GL ++DK DS DICF+ G ++ + EG+IV +G++LGRH G Sbjct: 317 WVRAEAERLGLGVSDKPDSYDICFIPDGDTQGFLRAHLG--SAEGEIVTPDGRVLGRHGG 374 Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 NYT+GQR+GLG+ G P +V+ +++V+VG E L V RI + WL Sbjct: 375 YWNYTVGQRKGLGIGAPAPDGRPRYVLETRPETNQVVVGASELLTVDRIECSDAVWLAPD 434 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPV--FVQRNDDGV----YVDFEKSEVGVASGQACVFY 368 DA G + + R+ P+PV V+R G V + GVA GQ+ V Y Sbjct: 435 DPGDAASGGL--YAQFRAHGRPLPVASLVRRAPGGAGARFVVGLAEGARGVARGQSLVVY 492 Query: 369 TSDSNEARVLGGGIISGSKRSDAVEES 395 D RVLG G I + R+ A S Sbjct: 493 RGD----RVLGEGTIDATSRAGAALAS 515 >gi|57241962|ref|ZP_00369902.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter upsaliensis RM3195] gi|57017154|gb|EAL53935.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Campylobacter upsaliensis RM3195] Length = 338 Score = 362 bits (930), Expect = 5e-98, Method: Composition-based stats. Identities = 125/368 (33%), Positives = 201/368 (54%), Gaps = 34/368 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+++VAMSGGVDS+V A LK+ G++VIG ++L+ +++ +V Sbjct: 1 MKILVAMSGGVDSTVTAYKLKKAGHEVIGCYMKLHGKP--------GYHEENIAKVEKVA 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + +++ D +E F+ V +PF ++Y G+TP PC CNR +K LL + LG + Sbjct: 53 KFLQIPYHILDLQEDFKAKVYMPFINTYKEGKTPNPCALCNRFIKLGKLLEFAKNLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R ++G + +D +DQSYFL ++ L L FPLG+MKKE V Sbjct: 113 LATGHYARL-----ENG----CIKVAVDESKDQSYFLANADKEALQYLIFPLGEMKKEDV 163 Query: 201 RDLAR--EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 + A E+ A + +S +ICFV+ Y DV+++ ++G+++ +G+++G HNG Sbjct: 164 KKFASTIEVLKSFATQKESSEICFVENT-YVDVLEQFM-DTKIKGEVLDSSGKVVGEHNG 221 Query: 259 IINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YTIG+RRG V +P FV+ ++ ++++VG +E L++ L IN D Sbjct: 222 YMHYTIGKRRGFEVRGAHDPHFVLKINPKENQIVVGTKEELKIKEFKLENINLFIDK--- 278 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 F C VKIR VP V +++ + ++ G+ASGQ VFY D R Sbjct: 279 ----KAFNCEVKIRYRSKSVPCEVLVDENLNAQISLKEPVYGLASGQMAVFYEED----R 330 Query: 377 VLGGGIIS 384 V+ G IS Sbjct: 331 VIASGFIS 338 >gi|51246807|ref|YP_066691.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfotalea psychrophila LSv54] gi|81641104|sp|Q6AIZ6|MNMA_DESPS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|50877844|emb|CAG37684.1| probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfotalea psychrophila LSv54] Length = 344 Score = 362 bits (930), Expect = 5e-98, Method: Composition-based stats. Identities = 112/360 (31%), Positives = 181/360 (50%), Gaps = 25/360 (6%) Query: 25 VAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTIN 84 +AMSGGVDS+ A L K+ G V+G ++L ++R ++ ++ Sbjct: 8 IAMSGGVDSTATAILQKQKG-PVLGFFMKLNQPDYETQRDR----------VSQIAQKLD 56 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + + D E F+ V+ F++SY G TP PC+ CN+ +KF + G + +ATG Sbjct: 57 IKLEIIDLTEEFQEYVLKYFSASYFKGLTPNPCIICNKEIKFGLFQQAILRQGVERIATG 116 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY + + + +D +DQSYFL +Q+QL FPLG M K ++ DL Sbjct: 117 HYAQIHKTAA-----GYQLHKGVDPHKDQSYFLSRLSQEQLAHSIFPLGGMHKGAIYDLV 171 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI 264 G ++SQD+CF++Q D +++ A G+IV +G+ILG+H G+ YT+ Sbjct: 172 EAHGFHDFRGTESQDVCFLEQDNVVDFLEQTAEFSASSGNIVMNDGKILGKHKGLHRYTV 231 Query: 265 GQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGF 324 GQRRGLG++ PL+V+ LD ++ VIVG E L + + +I+W+ ED Sbjct: 232 GQRRGLGISYPVPLYVINLDVKNNNVIVGENEQLFHKTMAISDIHWISQPEREDL----L 287 Query: 325 KCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 V IRS+ + + ++ V F++ + + GQ Y +VLG G+I Sbjct: 288 HASVHIRSTHKGAQASVILKENNRASVIFDEPQRAITPGQFATIYKD----TQVLGSGVI 343 >gi|297191915|ref|ZP_06909313.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces pristinaespiralis ATCC 25486] gi|197721106|gb|EDY65014.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces pristinaespiralis ATCC 25486] Length = 375 Score = 362 bits (930), Expect = 6e-98, Method: Composition-based stats. Identities = 140/375 (37%), Positives = 190/375 (50%), Gaps = 25/375 (6%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQD 72 + + + +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G CC +D Sbjct: 3 ETSQRPLRVLAAMSGGVDSAVAAARAAEAGHDVTGVHLAL-SANPQSFRTGARGCCTIED 61 Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSV 132 DARR D I + YV+D ERFR V+ F + Y AG TP PC+ CN +KF+ LL Sbjct: 62 SRDARRAADVIGIPFYVWDLAERFREDVVEDFIAEYEAGRTPNPCLRCNEKIKFAALLDK 121 Query: 133 TRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 LG D + TGHY L DDG R + R D+ +DQSY L ++QL FPL Sbjct: 122 ALALGFDAVCTGHYATVVL--KDDGS--RELHRASDMAKDQSYVLGVLDERQLAHAMFPL 177 Query: 193 GD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNG 250 GD K+ +R A GL +A K DS DICF+ G + EGDIV +G Sbjct: 178 GDTLTTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLADRLGTA--EGDIVDESG 235 Query: 251 QILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 + LG H G +TIGQR+GL + G+P +V+ + ++ V VGP E+L+V + Sbjct: 236 KKLGSHEGAFGFTIGQRKGLRIGHPAPDGKPRYVLDISPVNNTVTVGPVEALDVTALTAI 295 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-GVYVDFEKSEVGVASGQAC 365 + W G A ++R+ V + D + V F + GVA GQA Sbjct: 296 KPRWCG-----AAPEGPGTYTAQLRAHGGETEVTAELVDGSELRVTFTEPVRGVAPGQAV 350 Query: 366 VFYTSDSNEARVLGG 380 V Y RV+G Sbjct: 351 VLYDG----TRVVGS 361 >gi|21357477|ref|NP_652639.1| CG3021 [Drosophila melanogaster] gi|74872825|sp|Q9W5B6|MTU1_DROME RecName: Full=Mitochondrial tRNA-specific 2-thiouridylase 1 gi|15291857|gb|AAK93197.1| LD29918p [Drosophila melanogaster] gi|22831460|gb|AAF45578.3| CG3021 [Drosophila melanogaster] gi|220955682|gb|ACL90384.1| CG3021-PA [synthetic construct] Length = 389 Score = 362 bits (930), Expect = 6e-98, Method: Composition-based stats. Identities = 100/366 (27%), Positives = 164/366 (44%), Gaps = 21/366 (5%) Query: 32 DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91 DS+V A LL G+ V+GV ++ ++ G C D+ DA C + V + Sbjct: 14 DSAVSAHLLAEQGFKVLGVFMRNWDEADEV---GRCSGEADLKDAEWACRQLGVELRQVN 70 Query: 92 YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSR 150 Y + AV F Y G TP P + CNR +KF + LG D +ATGHY R+ Sbjct: 71 YVREYWTAVFSQFLDDYQMGLTPNPDILCNRHIKFDLFHKHALENLGYDAVATGHYARNS 130 Query: 151 LYVGDDG---KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREM 207 L +G + P D +DQ++FL +++ L FPLGD +K V+DLA+++ Sbjct: 131 LGNYLEGIASNNDARLLIPADTFKDQTFFLAGISRKALQRTMFPLGDFQKSQVKDLAKKI 190 Query: 208 GLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIINYTIG 265 G +A K +S ICFV + + D ++ + G + ++ G ++G H GI +T+G Sbjct: 191 GFQRLAKKKESTGICFVGKRNFKDFIQEYI--TSKRGPFLDIDSGAVVGHHEGIHQWTVG 248 Query: 266 QRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFE-DAVV 321 QR L + +P FV + S+ + V +L I + NWL + + Sbjct: 249 QRCRLSSFL-QPYFVARKEAASNTIYVASGHNHPALLSTHIAVDPPNWLCSKSQQILSDT 307 Query: 322 DGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 +C + + ++ V + + + V+ + + GQ VFY LG Sbjct: 308 GSLRCRFRFQHTKPLVDCQLSISPSNTFLVELDAPLRAITPGQYAVFYDD----TACLGS 363 Query: 381 GIISGS 386 I + Sbjct: 364 ARILSA 369 >gi|289679182|ref|ZP_06500072.1| tRNA-specific 2-thiouridylase MnmA [Pseudomonas syringae pv. syringae FF5] Length = 246 Score = 362 bits (930), Expect = 6e-98, Method: Composition-based stats. Identities = 97/254 (38%), Positives = 147/254 (57%), Gaps = 10/254 (3%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RV+V MSGGVDSSV A LL GY V G+ ++ + ++ C A +D+ DA+ VC Sbjct: 2 KRVIVGMSGGVDSSVSAVLLMEQGYQVEGLFMKNWEEDDGTE---YCTAREDLADAQAVC 58 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + + ++ + + V F Y AG TP P + CNR +KF L LGAD+ Sbjct: 59 DKIGIKLHTANFAAEYWDNVFEHFLEEYKAGRTPNPDILCNREIKFKAFLDYALMLGADL 118 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY+R R D R + + +D +DQSYFL A +Q+ FP+G+++K V Sbjct: 119 IATGHYVRRR-----DIDGRTELLKGLDPNKDQSYFLHAVGGEQIARTLFPVGELEKPEV 173 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R +A + GL A K DS ICF+ + ++ D +++ A G+I G+++GRH+G++ Sbjct: 174 RAIAEKHGLATAKKKDSTGICFIGERRFTDFLRQYLP--AQPGEIKTTEGEVIGRHSGLM 231 Query: 261 NYTIGQRRGLGVAM 274 +TIGQR+GLG+ Sbjct: 232 YHTIGQRQGLGIGG 245 >gi|302690264|ref|XP_003034811.1| hypothetical protein SCHCODRAFT_232108 [Schizophyllum commune H4-8] gi|300108507|gb|EFI99908.1| hypothetical protein SCHCODRAFT_232108 [Schizophyllum commune H4-8] Length = 350 Score = 362 bits (929), Expect = 6e-98, Method: Composition-based stats. Identities = 123/369 (33%), Positives = 178/369 (48%), Gaps = 30/369 (8%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A L+ GYDV G+ ++ +++R S C +D D +RV Sbjct: 1 MSGGVDSSVTAKLMLDQGYDVSGIYMRNWDTRDESGTDEGCEWKKDWNDVQRV------- 53 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD--VLATG 144 D + + N V P ++A+G TP P V CNR VKF L L A+ ATG Sbjct: 54 ----DLSKEYWNRVFQPSLDAWASGVTPNPDVLCNRHVKFGALHEHMGLLAAEDTWFATG 109 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY R G R + +D +DQSY+L + + L FPLG + K V+ LA Sbjct: 110 HYARKSWSNG-----RPTLLAGLDPVKDQSYYLASICESNLRPALFPLGTLHKSEVKRLA 164 Query: 205 REMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGIINY 262 RE L +AD+ +S ICFV +GK+ + + + G A G I L G+ +G H G+ NY Sbjct: 165 REFKLPVADRKESMGICFVGQKGKFKEFLSKYLEGKA--GSIRSLETGEEIGGHEGLWNY 222 Query: 263 TIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFEDA 319 T+G+R + M + +V D ++ V V P +L + +W+ + Sbjct: 223 TVGERARIPN-MLQRWYVADKDTENNIVYVVPGPDHPALFKRSTSVDHFDWIWKDAPPED 281 Query: 320 V--VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARV 377 + +DG K FVK P V+R GV + ++ V+ GQ V Y D E RV Sbjct: 282 IDSLDGLKAFVKFIYRMSPTRCTVRRQGQGVQILLDEPMRDVSLGQVAVIYHGD--ERRV 339 Query: 378 LGGGIISGS 386 LG G I+ + Sbjct: 340 LGCGTITYT 348 >gi|302537071|ref|ZP_07289413.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces sp. C] gi|302445966|gb|EFL17782.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Streptomyces sp. C] Length = 379 Score = 362 bits (929), Expect = 7e-98, Method: Composition-based stats. Identities = 135/379 (35%), Positives = 190/379 (50%), Gaps = 25/379 (6%) Query: 11 SLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCC 68 + +L + + +RV+ AMSGGVDS+V AA G+DV GV L L ++ S R G CC Sbjct: 2 TENLPRTARPLRVLAAMSGGVDSAVAAARAVEAGHDVTGVHLAL-SANPQSFRTGARGCC 60 Query: 69 AGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSD 128 +D DARR D I + Y +D ERFR V+ F + Y AG TP PC+ CN +KF+ Sbjct: 61 TIEDSRDARRAADVIGIPFYCWDLAERFREDVVEDFIAEYEAGRTPNPCLRCNEKIKFAA 120 Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 LL LG D + TGHY + ++ R + R D+ +DQSY L ++QL Sbjct: 121 LLDKALALGFDAVCTGHYAT----IVENADGSRELHRASDMAKDQSYVLGVLDEKQLAHA 176 Query: 189 RFPLGD--MKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV 246 FPLGD K+ +R A GL +A K DS DICF+ G + + EGDIV Sbjct: 177 LFPLGDTITTKDEIRAEAERRGLAVAKKPDSHDICFIADGDTQGFLAKRLGKA--EGDIV 234 Query: 247 H-LNGQILGRHNGIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVH 301 G+ +G H+G +TIGQR+GL + G+P +V+ + ++ V VGP E+L+V Sbjct: 235 DGATGEKVGTHDGAYGFTIGQRKGLRIGHPAPDGKPRYVLDISPVNNTVTVGPVEALDVT 294 Query: 302 RIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVAS 361 + W G ++R+ VF + D + V F + GVA Sbjct: 295 ALTAIRPRWCG-----STPAAPGTYTAQLRAHGGETEVFAEVVDGELRVTFTEPVRGVAP 349 Query: 362 GQACVFYTSDSNEARVLGG 380 GQA V Y RV+G Sbjct: 350 GQAIVLYDD----TRVVGS 364 >gi|60679769|ref|YP_209913.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis NCTC 9343] gi|81317158|sp|Q5LIS5|MNMA1_BACFN RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 gi|60491203|emb|CAH05951.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides fragilis NCTC 9343] Length = 364 Score = 362 bits (929), Expect = 7e-98, Method: Composition-based stats. Identities = 112/383 (29%), Positives = 182/383 (47%), Gaps = 36/383 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ RV++ MSGG DSSV A LL GY+V GVT + Y +++ + DAR Sbjct: 4 KNKRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNGSTEY---------LEDARA 54 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + H +D + F+ +I F Y +G TP+PC CN +K+ L + ++G Sbjct: 55 LAARLGIGHITYDARKVFQEQIIDYFIDEYMSGHTPVPCTLCNNQLKWPLLAKIADEMGI 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 LATGHY+R + G+ + D+++DQS+FL+ Q+ L + P+G M K Sbjct: 115 FYLATGHYVRKQWIDGN-----YYIAPAEDVDKDQSFFLWGLRQEILQRMLLPMGGMTKS 169 Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVK-----------RINAGIALEGDIV 246 R A G + ++ K DS +CF Y +K R G + Sbjct: 170 EARAYAAGRGFEKVSKKKDSIGVCFCPL-DYRSFLKKCLCDESGDKNRNIYRKVERGRFL 228 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 +G + H G YTIGQRRGLG+ + +FV + ++ V++ +SLE ++L+ Sbjct: 229 DESGNFIAWHEGYPFYTIGQRRGLGIQLNRAVFVKEIHPETNEVVLASLKSLEKSEMWLK 288 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365 + N + E ++ VKIR + V +G +++ + +A GQA Sbjct: 289 DWNIVD----ESRLLGCDDVIVKIRYRKQENHCSVTITPEGLLHIRLHEPLSAIAEGQAA 344 Query: 366 VFYTSDSNEARVLGGGIISGSKR 388 FY +LGGGII+ + + Sbjct: 345 AFYKD----GLLLGGGIITMTDQ 363 >gi|269127770|ref|YP_003301140.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Thermomonospora curvata DSM 43183] gi|268312728|gb|ACY99102.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Thermomonospora curvata DSM 43183] Length = 358 Score = 362 bits (929), Expect = 7e-98, Method: Composition-based stats. Identities = 144/375 (38%), Positives = 187/375 (49%), Gaps = 25/375 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY-NSRKASKRKGSCCAGQDVYDARRVC 80 RV+ AMSGGVDS+V AA + G+DV GV + L N R CC +D DARR Sbjct: 4 RVLAAMSGGVDSAVAAARVAEAGHDVTGVHMALSANPRSYRTGARGCCTLEDARDARRAA 63 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D I + YV+D ERF V+ F S YAAG TP PC+ CN +KF+ LL LG D Sbjct: 64 DVIGIPFYVWDLAERFDRDVVADFVSEYAAGRTPNPCLRCNEKIKFAALLDRALALGFDA 123 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 + TGHY R V + R +D +DQSY L T +QL FPLGD K + Sbjct: 124 VCTGHYARWENGV---------LRRGVDTAKDQSYVLAVCTPEQLAHAIFPLGDTTKAEI 174 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R A GL +ADK DS DICF+ G + G IV GQ++G H G Sbjct: 175 RREAERRGLAVADKPDSHDICFIADGDTRAFLAERLGTA--PGPIVDETGQVVGEHQGAY 232 Query: 261 NYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 YTIGQRRGL + G P +V+ + ++ V VGPRE+L+VH I WL Sbjct: 233 AYTIGQRRGLRLGRPAPDGRPRYVLDISPATNTVTVGPREALDVHEIVGERPVWLA---- 288 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 +C V++R+ + + + D V + + GVA GQA V Y D R Sbjct: 289 -PPPAGPHECQVQLRAHGEVYDCTAEADGDRVRIRLHEPARGVARGQAAVLYDGD----R 343 Query: 377 VLGGGIISGSKRSDA 391 V+G I+ + R A Sbjct: 344 VIGSSTIALTSRVPA 358 >gi|253564435|ref|ZP_04841892.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 3_2_5] gi|251948211|gb|EES88493.1| tRNA-specific 2-thiouridylase mnmA 1 [Bacteroides sp. 3_2_5] gi|301161234|emb|CBW20772.1| putative tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides fragilis 638R] Length = 364 Score = 362 bits (929), Expect = 8e-98, Method: Composition-based stats. Identities = 113/383 (29%), Positives = 182/383 (47%), Gaps = 36/383 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ RV++ MSGG DSSV A LL GY+V GVT + Y +++ + DAR Sbjct: 4 KNKRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNGSTEY---------LEDARA 54 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + H +D + F+ +I F Y +G TP+PC CN +K+ L + ++G Sbjct: 55 LAARLGIGHITYDARKVFQEQIIDYFIDEYMSGHTPVPCTLCNNQLKWPLLAKIADEMGI 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 LATGHY+R + G+ + D+++DQS+FL+ Q+ L + P+G M K Sbjct: 115 FYLATGHYVRKQWVDGN-----YYIAPAEDVDKDQSFFLWGLKQEILQRMLLPMGGMTKS 169 Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVK-----------RINAGIALEGDIV 246 R A G + ++ K DS +CF Y +K R G + Sbjct: 170 EARAYAAGRGFEKVSKKKDSIGVCFCPL-DYRSFLKKCLCDESGDKNRNIYRKVERGRFL 228 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 +G + H G YTIGQRRGLG+ + +FV + ++ V++ +SLE ++L+ Sbjct: 229 DESGNFIAWHEGYPFYTIGQRRGLGIQLNRAVFVKEIHPETNEVVLASLKSLEKSEMWLK 288 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365 + N + E ++ VKIR + V +G +++ + +A GQA Sbjct: 289 DWNIVD----ESRLLGCDDVIVKIRYRKQENHCSVTITPEGLLHIRLHEPLSAIAEGQAA 344 Query: 366 VFYTSDSNEARVLGGGIISGSKR 388 FY +LGGGII+ S + Sbjct: 345 AFYKD----GLLLGGGIITMSDQ 363 >gi|160883986|ref|ZP_02064989.1| hypothetical protein BACOVA_01960 [Bacteroides ovatus ATCC 8483] gi|156110716|gb|EDO12461.1| hypothetical protein BACOVA_01960 [Bacteroides ovatus ATCC 8483] Length = 378 Score = 361 bits (928), Expect = 9e-98, Method: Composition-based stats. Identities = 112/398 (28%), Positives = 176/398 (44%), Gaps = 52/398 (13%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV++ MSGG DSSV A L GY+VIGVT + Y +++ + DAR Sbjct: 4 ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFYELNGSTEY---------LEDARN 54 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + H +D E F +I F Y AG TP+PC CN +K+ L + ++G Sbjct: 55 LAERLGIRHITYDAREIFSKQIIEYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGV 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY ++ + D ++DQ++FL+ Q LC + P+GD+ K Sbjct: 115 FYIATGHYAQNIQL-----NNTFYITYAADSDKDQTFFLWGLKQDILCRMLLPMGDITKV 169 Query: 199 SVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINA-------------------- 237 R A E G +A K DS +CF Y +K A Sbjct: 170 EARVWAAEHGFQKVATKKDSIGVCFCPM-DYRTFLKNWLAQNNEALAEEEQMMGENQALV 228 Query: 238 -------GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRV 290 G V G + H G YTIGQRRGLG+ + P+FV ++ + V Sbjct: 229 GSNQAGLNKVKRGRFVDEKGDFIAWHEGYPFYTIGQRRGLGIHLNRPVFVKEINPEKNEV 288 Query: 291 IVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VY 349 ++ +LE ++L++ N + ++ + VKIR + + D ++ Sbjct: 289 VLASLSALEKTEMWLKDWNLVN----QERTLGHSDIIVKIRYRKQENHATITITPDHLLH 344 Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387 V + +A GQA FY +LGGGII ++ Sbjct: 345 VQLHEPLTAIAPGQAAAFYKD----GLLLGGGIIVNAR 378 >gi|307719725|ref|YP_003875257.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Spirochaeta thermophila DSM 6192] gi|306533450|gb|ADN02984.1| probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Spirochaeta thermophila DSM 6192] Length = 352 Score = 361 bits (928), Expect = 9e-98, Method: Composition-based stats. Identities = 122/365 (33%), Positives = 180/365 (49%), Gaps = 19/365 (5%) Query: 26 AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85 AMSGGVDSSV A LL G +V+G+T N+ +G ++ AR V + + Sbjct: 2 AMSGGVDSSVTAHLLLSAGIEVVGLTFIRVNTPAEVDHEG---FSEEARAAREVASHLGI 58 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATG 144 H+V + + + + V+ Y +G TP PCV CNRT+KF L+ R+ L AD +ATG Sbjct: 59 EHHVLNLHDLYTSRVLRRAWEEYRSGRTPNPCVLCNRTLKFGHLVRYAREVLRADGIATG 118 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY R + D + + R ++QSYFL T + L FPLGD K+ +R A Sbjct: 119 HYARIYV----DAEGGVHLMRGKAGTKEQSYFLAQTRPEDLRHAYFPLGDQTKDEIRTYA 174 Query: 205 REMGLDIADKSDSQDICFVQQG-KYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263 R G+ A++ +SQD+CF G ++ + ++ G I+ G +LGRH GI +T Sbjct: 175 RHHGIPTAERPESQDVCFNTTGLRFGEFLEEFFEEGGEPGPILDERGNVLGRHRGIHVFT 234 Query: 264 IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR-ESLEVHRIYLREINWLGDGLFEDAVVD 322 IGQRRGLGVA+G P++V +D + VIV R E+L + +NW Sbjct: 235 IGQRRGLGVALGRPVYVKAIDPERNAVIVTDREEALLHRVVEAAGVNWFA-----PPPSG 289 Query: 323 GFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGI 382 + +IR + P + D + V F + + V GQ Y D VL G Sbjct: 290 PVEVLAQIRYAHRAAPAVLTHEGDRIRVRFHEPQRAVTPGQLLAAYVGD----EVLCSGF 345 Query: 383 ISGSK 387 I ++ Sbjct: 346 IMQTE 350 >gi|265764899|ref|ZP_06093174.1| tRNA methyl transferase [Bacteroides sp. 2_1_16] gi|263254283|gb|EEZ25717.1| tRNA methyl transferase [Bacteroides sp. 2_1_16] Length = 364 Score = 361 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 113/383 (29%), Positives = 182/383 (47%), Gaps = 36/383 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ RV++ MSGG DSSV A LL GY+V GVT + Y +++ + DAR Sbjct: 4 KNKRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNGSTEY---------LEDARA 54 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + H +D + F+ +I F Y +G TP+PC CN +K+ L + ++G Sbjct: 55 LAARLGIGHITYDARKVFQEQIIDYFIDEYMSGHTPVPCTLCNNQLKWPLLAKIADEMGI 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 LATGHY+R + G+ + D+++DQS+FL+ Q+ L + P+G M K Sbjct: 115 FYLATGHYVRKQWIDGN-----YYIAPAEDVDKDQSFFLWGLRQEILQRMLLPMGGMTKS 169 Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVK-----------RINAGIALEGDIV 246 R A G + ++ K DS +CF Y +K R G + Sbjct: 170 EARAYAAGRGFEKVSKKKDSIGVCFCPL-DYRSFLKKCLCDESGDKNRNIYRKVERGRFL 228 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 +G + H G YTIGQRRGLG+ + +FV + ++ V++ +SLE ++L+ Sbjct: 229 DESGNFIAWHEGYPFYTIGQRRGLGIQLNRAVFVKEIHPETNEVVLASLKSLEKSEMWLK 288 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365 + N + E ++ VKIR + V +G +++ + +A GQA Sbjct: 289 DWNIVD----ESRLLGCDDVIVKIRYRKQENHCSVTITPEGLLHIRLHEPLSAIAEGQAA 344 Query: 366 VFYTSDSNEARVLGGGIISGSKR 388 FY +LGGGII+ S + Sbjct: 345 AFYKD----GLLLGGGIITMSDQ 363 >gi|224372387|ref|YP_002606759.1| tRNA-specific 2-thiouridylase MnmA [Nautilia profundicola AmH] gi|223589875|gb|ACM93611.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Nautilia profundicola AmH] Length = 341 Score = 361 bits (928), Expect = 1e-97, Method: Composition-based stats. Identities = 126/371 (33%), Positives = 201/371 (54%), Gaps = 36/371 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 RV+V +SGGVDS++ LLK GYDV+G+ ++++ ++V R+ Sbjct: 3 KRVLVGVSGGVDSAMSVYLLKEQGYDVVGIYMKMHE---------GVNHVENVAKLNRLS 53 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + D E+ FR V F SY G TP PC CN +KF + + G ++ Sbjct: 54 KKLGFEYVIEDVEDEFRKEVYEYFVESYKQGITPNPCAMCNIKIKFGIFMGFLEKYGCEL 113 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY+R+ DG+ + + D +DQSYFLF ++ L + FPLG+ K+ + Sbjct: 114 AATGHYVRN------DGE---FLYQAKDQSKDQSYFLFGIKKKVLPKILFPLGEYTKDEI 164 Query: 201 RDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 + LA E+GL + A + +SQDICF+ Y DV+K ++ +G +V+ GQ +G H G Sbjct: 165 KKLASEIGLDEFASQKESQDICFI-DNSYIDVLK-LHFNPERKGKVVNKRGQKIGVHKGY 222 Query: 260 INYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREIN-WLGDGLFE 317 YT+GQR+G + +P +V+ +D S+ +IVG ++ LE +++L+ +N ++ D + Sbjct: 223 SFYTVGQRKGFNLFKSHKPQYVIGIDAKSNTLIVGDKKDLEKKQVFLKGVNLFIDDKV-- 280 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 F+C KIR VP V+ + V+F + GVA GQACVFY + + Sbjct: 281 ------FECEAKIRYRAPKVPAVVKMESKSKAVVNFHEPVSGVAKGQACVFYEGE----K 330 Query: 377 VLGGGIISGSK 387 +LGGG I G + Sbjct: 331 LLGGGWIRGGR 341 >gi|296127476|ref|YP_003634728.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Brachyspira murdochii DSM 12563] gi|296019292|gb|ADG72529.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Brachyspira murdochii DSM 12563] Length = 352 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 133/368 (36%), Positives = 197/368 (53%), Gaps = 27/368 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG---QDVYDARR 78 ++ V MS GVDS+ A +LK G +V GVT+ L+N K + GSC + + V + R+ Sbjct: 3 KIAVGMSAGVDSTTTAKILKEKGNEVFGVTMLLWNGDKRAPLSGSCYSPSQLKMVEECRK 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137 I + +Y FD + F+ VI A SY G TP PC+ CN +KF L + G Sbjct: 63 YAQAIGIDYYAFDVSDMFQKKVIDYVAESYKKGLTPNPCIMCNSQIKFMALFEAIEKQGL 122 Query: 138 -ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 D ATGHY + D+ +R ++ R +L +DQSYFL+ TQ QL + FP+ + Sbjct: 123 EFDKFATGHYAGIKY---DEKTKRYLLLRGKNLIKDQSYFLYRLTQNQLSKIIFPMHENT 179 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGR 255 KE R +ARE L++A+KS+SQD + + FD EGDI++++ +ILG Sbjct: 180 KEDTRKMAREYNLEVAEKSESQDFFAGEYSRLFD--------EDREGDIINIDTNEILGH 231 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H GI +YT+GQR+GLG+A EPLFVV LD ++ V VG + V+ + + ++NW+ Sbjct: 232 HKGIWHYTVGQRKGLGIAYKEPLFVVSLDSKTNTVYVGNKNHTFVNEVTVYDVNWIA--- 288 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSNE 374 + F+ VK RS+ V ++ V + F + VA GQ+CV Y D Sbjct: 289 --EPRDKEFEALVKTRSAHKGSMARVIPIEENVINIKFFEPTGIVARGQSCVCYDEDVT- 345 Query: 375 ARVLGGGI 382 L GG+ Sbjct: 346 ---LCGGV 350 >gi|53711506|ref|YP_097498.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides fragilis YCH46] gi|81383903|sp|Q64ZW2|MNMA1_BACFR RecName: Full=tRNA-specific 2-thiouridylase mnmA 1 gi|52214371|dbj|BAD46964.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Bacteroides fragilis YCH46] Length = 364 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 113/383 (29%), Positives = 182/383 (47%), Gaps = 36/383 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K+ RV++ MSGG DSSV A LL GY+V GVT + Y +++ + DAR Sbjct: 4 KNKRVLLGMSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNGSTEY---------LEDARA 54 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + H +D + F+ +I F Y +G TP+PC CN +K+ L + ++G Sbjct: 55 LAARLGIGHITYDARKVFQEQIIDYFIDEYMSGHTPVPCTLCNNQLKWPLLAKIADEMGI 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 LATGHY+R + G+ + D+++DQS+FL+ Q+ L + P+G M K Sbjct: 115 FYLATGHYVRKQWVDGN-----YYIAPAEDVDKDQSFFLWGLRQEILQRMLLPMGGMTKS 169 Query: 199 SVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVK-----------RINAGIALEGDIV 246 R A G + ++ K DS +CF Y +K R G + Sbjct: 170 EARAYAAGRGFEKVSKKKDSIGVCFCPL-DYRSFLKKCLCDESGDKNRNIYRKVERGRFL 228 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLR 306 +G + H G YTIGQRRGLG+ + +FV + ++ V++ +SLE ++L+ Sbjct: 229 DESGNFIAWHEGYPFYTIGQRRGLGIQLNRAVFVKEIHPETNEVVLASLKSLEKSEMWLK 288 Query: 307 EINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQAC 365 + N + E ++ VKIR + V +G +++ + +A GQA Sbjct: 289 DWNIVD----ESRLLGCDDVIVKIRYRKQENHCSVTITPEGLLHIRLHEPLSAIAEGQAA 344 Query: 366 VFYTSDSNEARVLGGGIISGSKR 388 FY +LGGGII+ S + Sbjct: 345 AFYKD----GLLLGGGIITMSDQ 363 >gi|328953724|ref|YP_004371058.1| tRNA-specific 2-thiouridylase mnmA [Desulfobacca acetoxidans DSM 11109] gi|328454048|gb|AEB09877.1| tRNA-specific 2-thiouridylase mnmA [Desulfobacca acetoxidans DSM 11109] Length = 351 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 118/365 (32%), Positives = 181/365 (49%), Gaps = 28/365 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RV VA+SGG+DS+V AALL G++V GV L L D+ +C Sbjct: 7 RVAVALSGGLDSTVAAALLLNQGFEVQGVHLTL------------TEKSADISGIESLCQ 54 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + ++++ D F+ +I FA+ Y G TP PCV CN +KF L R G D L Sbjct: 55 FLGIAYFQLDLRREFKARIIADFAAQYRLGLTPNPCVRCNELIKFGFLFQAVRSQGFDYL 114 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY R + + +D +++QSYFL + L + PLG + K VR Sbjct: 115 ATGHYARVEAAP----NGMMGLWQGVDPDKEQSYFLHRLSPDCLPAVLLPLGRLTKSQVR 170 Query: 202 DLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRIN-AGIALEGDIVHLNGQILGRHNGI 259 + + GL +SQ++CF+ G Y D ++ ++ G+ G IV+ G++LG H G+ Sbjct: 171 EKSLAWGLAQYLPNRESQELCFIPDGDYIDFMRNMDVTGLDRPGPIVNRRGEVLGTHRGV 230 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +YT+GQR+GLG+ P +V+ + +R++VG + L + + +INW F Sbjct: 231 EHYTVGQRQGLGLPGPAPSYVLEIIPAGNRLVVGCKADLLADELLVEDINW-----FIPV 285 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 ++ + VKIR + D V V F+ + + GQA VFY + R+L Sbjct: 286 PLEPLRARVKIRYRHPGATAIILPLDRRRVRVRFDLPQTAITPGQAAVFYQDN----RLL 341 Query: 379 GGGII 383 GGG I Sbjct: 342 GGGWI 346 >gi|256092379|ref|XP_002581921.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methy lt ransferase [Schistosoma mansoni] gi|238668268|emb|CAZ38161.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methy lt ransferase,putative [Schistosoma mansoni] Length = 313 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 157/311 (50%), Positives = 211/311 (67%), Gaps = 8/311 (2%) Query: 3 VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLY--NSRKA 60 + + + L DK P + VVAMSGGVDSSV A LL R GY VIGVTLQLY + Sbjct: 1 MLKEFEIEPLLKDKVPHQTKAVVAMSGGVDSSVAAVLLHRLGYQVIGVTLQLYGADGNSN 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 +++KG CCAGQD+YDA+RV + HY+ +YEE F+ VI FA +Y G+TP+PC+ C Sbjct: 61 TRKKGVCCAGQDIYDAKRVAEGTGFPHYILNYEEIFKKEVIESFAQTYIQGKTPIPCIKC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 N+TVKF DLL VTR LGADVL TGHY+R G+ +CR +D +DQSYFLFAT Sbjct: 121 NQTVKFRDLLQVTRNLGADVLITGHYVRRLEKNGE-----VKLCRGIDKSKDQSYFLFAT 175 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 T++QL LRFPLG K +VR LAR L I++K DSQDICFV + Y + ++ Sbjct: 176 TKEQLKLLRFPLGGFYKCNVRKLARYFSLPISEKPDSQDICFVSE-NYSKTIAKLAPQSI 234 Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300 +G IV +NG++LG HNGI+N+T+GQR+GLG+A EPL+VV ++ ++ ++VGP +L Sbjct: 235 QKGKIVDVNGKVLGEHNGIVNFTVGQRKGLGIAYSEPLYVVRINTKNNEIVVGPVNALMQ 294 Query: 301 HRIYLREINWL 311 +I ++E+NWL Sbjct: 295 RKILVKELNWL 305 >gi|256380038|ref|YP_003103698.1| tRNA-specific 2-thiouridylase MnmA [Actinosynnema mirum DSM 43827] gi|255924341|gb|ACU39852.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Actinosynnema mirum DSM 43827] Length = 362 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 135/378 (35%), Positives = 185/378 (48%), Gaps = 30/378 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV GV L L +++ + R GS CC +D +DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVEAGHDVTGVHLAL-SAKPGTLRTGSRGCCTIEDSHDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ ERF V+ F + YAAG TP PC+ CN +KF LL LG Sbjct: 60 AADVLGIPFYVWDFAERFTEDVVEDFVAEYAAGRTPNPCLRCNERIKFEALLDKAIALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D + TGHY R + G + R D +DQSY L + T++QL FPLG K Sbjct: 120 DAVCTGHYARLDVVDGS-----VELRRSADEGKDQSYVLASLTREQLAHAMFPLGGSTKV 174 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNGQILGRHN 257 VR A GL +A K DS DICF+ G + + A G +V G +LG+H Sbjct: 175 EVRAEAARRGLSVAAKPDSHDICFIPDGDTQGFLTKRLGQRA--GVLVDDETGAVLGQHV 232 Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYL----REIN 309 G+ +T+GQR+GLG+ G P +V+ L+ S V VG E L V I ++ Sbjct: 233 GVHGFTVGQRKGLGIDAPAPDGRPRYVLSLEPVSGTVRVGAAEKLAVREIVAVRPVSRVD 292 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369 W +C ++R+ P + + + V + GVA GQA Y Sbjct: 293 W----------SGPVECVAQVRAHGGTAPAIAELVGEELVVRLREPLSGVAPGQAVAVYR 342 Query: 370 SD-SNEARVLGGGIISGS 386 D VL I + Sbjct: 343 EDPEGGDLVLASATIERT 360 >gi|190348444|gb|EDK40897.2| hypothetical protein PGUG_04995 [Meyerozyma guilliermondii ATCC 6260] Length = 412 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 109/387 (28%), Positives = 186/387 (48%), Gaps = 33/387 (8%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 + D +VVAMS GVDSSV AA+ + +V G+ + ++ + + C D Sbjct: 42 QEPDSDDEIVVAMSSGVDSSVAAAIYAKKYKNVRGIYMANWS-------QTAKCTEADWK 94 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133 D +R+C+ I + ++E + + V P S+Y G TP P V CN+ VKF ++ Sbjct: 95 DVQRICEQIQIPCERVNFEREYWSDVFQPMISAYQEGLTPNPDVGCNKYVKFGKMVEHLG 154 Query: 134 RQLGAD---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 LG D L TGHY R + ++ +R + R + +DQSY+L L ++ Sbjct: 155 AMLGKDRKWWLVTGHYAR---IMKNENTQRFSLLRGLYPNKDQSYYLSMVPYSILSNVLM 211 Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFV--QQGKYFDVVKRINAGIALEGDIVHL 248 P+G M K VR +A+++ L +A K DSQ +CFV ++ + + G+IV Sbjct: 212 PIGHMTKPEVRQIAKDLNLLVASKPDSQGLCFVSQEENSFRKFLDEYIE--PNPGNIVTE 269 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIV---GPRESLEV 300 +G+I G+H G+ + TIGQ+ G+ + G P FV + ++ +++ G SL Sbjct: 270 DGKIWGQHQGLWHATIGQKSGISMPQGNPDYKGVWFVSEKRQATNELVIVKGGNHPSLFN 329 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGV 359 ++ W+ + A + ++ RS Q P+ V + D + ++ E+ + Sbjct: 330 SKVLAENWTWIDEKNVAKAADMPYH--IQYRSLQFPLKVKAIVPKADSLEIELEEKARAM 387 Query: 360 ASGQACVFYTSDSNEARVLGGGIISGS 386 A GQ V Y ++VLG G+I + Sbjct: 388 APGQNLVLYKD----SQVLGSGVIKRA 410 >gi|237720472|ref|ZP_04550953.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 2_2_4] gi|293368878|ref|ZP_06615481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides ovatus SD CMC 3f] gi|229450223|gb|EEO56014.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 2_2_4] gi|292636027|gb|EFF54516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides ovatus SD CMC 3f] Length = 385 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 112/405 (27%), Positives = 177/405 (43%), Gaps = 59/405 (14%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV++ MSGG DSSV A L GY+VIGVT + Y +++ + DAR Sbjct: 4 ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFYELNGSTEY---------LEDARN 54 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + H +D E F +I F Y AG TP+PC+ CN +K+ L + ++G Sbjct: 55 LAERLGIRHITYDAREIFSKQIIEYFVQEYLAGRTPVPCILCNNYLKWPLLAKIADEMGV 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY ++ + D ++DQ++FL+ Q LC + P+GD+ K Sbjct: 115 FYIATGHYAQNIQL-----NNTFYITYAADSDKDQTFFLWGLKQDILCRMLLPMGDITKV 169 Query: 199 SVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINA-------------------- 237 R A E G +A K DS +CF Y +K A Sbjct: 170 EARVWAAEHGFRKVATKKDSIGVCFCPM-DYRTFLKNWLAQNNEALAEEEQMMGENQALV 228 Query: 238 --------------GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYL 283 G V G + H G YTIGQRRGLG+ + P+FV + Sbjct: 229 GDWQVLVGSNQAGLNKVKRGRFVDEKGDFIAWHEGYPFYTIGQRRGLGIHLNRPVFVKEI 288 Query: 284 DKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR 343 + + V++ +LE ++L++ N + ++ + VKIR + + Sbjct: 289 NPEKNEVVLASLSALEKTEMWLKDWNLVN----QERTLGHSDIIVKIRYRKQENHATITI 344 Query: 344 NDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387 D ++V + +A GQA FY +LGGGII ++ Sbjct: 345 TPDHLLHVQLHEPLTAIAPGQAAAFYKD----GLLLGGGIIVNAR 385 >gi|300933640|ref|ZP_07148896.1| tRNA-specific 2-thiouridylase MnmA [Corynebacterium resistens DSM 45100] Length = 374 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 136/388 (35%), Positives = 185/388 (47%), Gaps = 38/388 (9%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS-KRKGSCCAGQDVYDARRVCDTINV 85 MSGGVDS+V A+ G+DV+GV L L S +A CC+ +D DARRV D + + Sbjct: 1 MSGGVDSAVAASRALEAGHDVVGVHLALSQSPEAVRAGSRGCCSLEDSADARRVADKLGI 60 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145 YV+D+ +RF+ VI F SY+ GETP PC+ CN +KF LL + LG D +ATGH Sbjct: 61 PFYVWDFSDRFKADVIDNFVDSYSIGETPNPCLRCNEKIKFEALLDRSIALGFDAVATGH 120 Query: 146 YIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAR 205 Y R V + R +D +DQSY L T +QL FP+GD K +R+ A Sbjct: 121 YARLHDGV---------LRRGIDANKDQSYVLGVLTDEQLAHCMFPVGDTIKPDIREEAA 171 Query: 206 EMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIG 265 E G +A K DS DICF+ G+ + N G + G+ L H+G+ +TIG Sbjct: 172 ENGFGVASKPDSHDICFIPDGRTQAFLG--NKIGLRPGMVQSTGGEKLADHDGVYGFTIG 229 Query: 266 QRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVV 321 QR+GLG+ G+P +V +D + V VG R L + I + L + Sbjct: 230 QRKGLGLPREGLDGKPRYVTDIDAATGTVTVGHRRDLRIGGIVADRL----KRLDPEVHG 285 Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYVDF--------EKSEV----------GVASGQ 363 F C V++R+ VP + DD V E GVA GQ Sbjct: 286 REFDCEVQVRAHGGVVPAVARLVDDPEPVTPAGRNKHEDEAPFRLELELAEPLEGVARGQ 345 Query: 364 ACVFYTSDSNEARVLGGGIISGSKRSDA 391 A V Y D +LG G I + D Sbjct: 346 AAVVYRPDEAGDILLGSGTIRATTPWDR 373 >gi|300726991|ref|ZP_07060411.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella bryantii B14] gi|299775714|gb|EFI72304.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella bryantii B14] Length = 361 Score = 360 bits (925), Expect = 2e-97, Method: Composition-based stats. Identities = 107/371 (28%), Positives = 167/371 (45%), Gaps = 23/371 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD ++ V +SGGVDSSVV G +++ + + C + +D+ A Sbjct: 8 KDKKIAVLLSGGVDSSVVVYEFASHGLHPDCFYIKI---GPEEQEEWDCSSEEDLEMATA 64 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V V D + + N V +G TP P V CNR +KF Sbjct: 65 VAARFGCKLQVIDCHKEYWNQVTKYTMDKVKSGFTPNPDVMCNRLIKFGAF-DEKMGHDY 123 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ATGHY ++ + G ++ + D +DQ+ FL Q QL FP+G K+ Sbjct: 124 DLIATGHYAQTEIIDG-----KKWLVTSPDPVKDQTDFLAQIYQWQLKKAIFPIGHHIKD 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHN 257 +R++A L A + DSQ ICF+ Y + V+R +G+++ G+ +G H Sbjct: 179 EIREIAEREHLINAKRKDSQGICFLGNIDYNEYVRRYLGE--KKGNVIEFETGKKIGEHK 236 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314 G+ +TIGQR+GLG+ G P FVV D + + V + + ++L +G Sbjct: 237 GLWFHTIGQRKGLGLGGG-PWFVVKKDIEKNILYVSHGYDPETAYKQDFKIHDFDFLTEG 295 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + E + KIR + + P V+ N DG + ++ GVA GQ CV Y D Sbjct: 296 ITELPA----RVTFKIRHTPEYHPASVEVNGDGTFTIHSDEKIHGVAPGQFCVIY--DEQ 349 Query: 374 EARVLGGGIIS 384 R G G I+ Sbjct: 350 HHRCYGSGEIT 360 >gi|255728973|ref|XP_002549412.1| hypothetical protein CTRG_03709 [Candida tropicalis MYA-3404] gi|240133728|gb|EER33284.1| hypothetical protein CTRG_03709 [Candida tropicalis MYA-3404] Length = 426 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 111/399 (27%), Positives = 185/399 (46%), Gaps = 37/399 (9%) Query: 3 VSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKAS 61 ++E + + P+D ++VAMS GVDSSV AAL Y +V G+ + ++ Sbjct: 49 INELPENSYIQPTPGPED-HIIVAMSSGVDSSVCAALF--QNYKNVHGIYMANWS----- 100 Query: 62 KRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN 121 + + C +D D ++VC +N+ ++E + N V +P Y G TP P + CN Sbjct: 101 --QNATCTERDWRDVQKVCQDLNIDCERVNFEHEYWNDVFLPMIEKYERGLTPNPDIGCN 158 Query: 122 RTVKFSDLLSVTRQL---GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLF 178 + VKF L Q L TGHY R + + + R + +DQSY+L Sbjct: 159 KYVKFGKLAEYLEQKYHGKKWWLVTGHYARVMKH---NATGEYHLLRGLSSRKDQSYYLS 215 Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQG--KYFDVVKRIN 236 + L P+G K +R+LA++ L A K DSQ +CFV + D + Sbjct: 216 SIPASILSKTILPIGHYTKPEIRELAKKFNLHTASKPDSQGLCFVNPNQSNFRDFLNEYI 275 Query: 237 AGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVI 291 A GDIV +G + G+H G+ + TIGQR + + G+P FV + ++++ Sbjct: 276 P--ANPGDIVTEDGTVWGKHKGLWHATIGQRSTVSMPQGDPKYQGVWFVSEKNIEKNQLV 333 Query: 292 VG---PRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRN-DDG 347 + L + + ++ W+ ++ V+ + S PVPV V +N D Sbjct: 334 IVKGTDNPKLFKQVVEITDLEWI---QPKEKVLAMDNVQFQYHSLTTPVPVKVIKNKGDK 390 Query: 348 VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGS 386 + ++ EK +A GQ + Y + +VLGGG+I+ + Sbjct: 391 LIIELEKPARALAPGQGGILYNGN----QVLGGGMINKT 425 >gi|205814822|sp|B2S125|MNMA_BORHD RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 354 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 106/369 (28%), Positives = 181/369 (49%), Gaps = 26/369 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ V +SGGVDSSV + + GY I L+++ + S G C +D+ V Sbjct: 1 MKIAVLLSGGVDSSVALYTMIQKGYKNIKCYYLKIWLEDELS-YIGECPWEEDINYVEAV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C NV + + ++ + V+ G TP P + CN+ +KF + D Sbjct: 60 CTKFNVPYEIISLQDEYYKRVVTYAIEELKIGNTPSPDIFCNQRIKFGAFFDKINEH-YD 118 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ TGHY + ++ I+ + D +DQSYFL +++Q+ L FPLGD+ K Sbjct: 119 LIVTGHYAKI-----ENKNNHYILKQAKDKIKDQSYFLSHLSREQISKLHFPLGDLLKTE 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNGQILGRHNG 258 +R +A ++ L ++ DSQ ICF+ + KY + +K + +G+I+ G+ILG HNG Sbjct: 174 IRQIAHKIDLPNKNRKDSQGICFLGKIKYDEFIKYHLGEL--KGNIIEQETGKILGTHNG 231 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE---VHRIYLREINWLGDGL 315 +TIGQR+G+ ++ G P FV D ++ + + + H+ + + NW+ Sbjct: 232 YWFFTIGQRKGIKLSHG-PWFVTEKDIQNNIIYISNSVNYLAQGKHQFLVHKTNWIN--- 287 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 V+ KIR + + ++ +D + VD E+ + G++ GQ C+FY D Sbjct: 288 ---KPVNNIDLSAKIRHGEKKIKCKIEMLKNDIIKVDLEEKDYGISPGQFCIFYQED--- 341 Query: 375 ARVLGGGII 383 LGG I Sbjct: 342 -ECLGGAQI 349 >gi|187918538|ref|YP_001884101.1| tRNA-specific 2-thiouridylase MnmA [Borrelia hermsii DAH] gi|119861386|gb|AAX17181.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia hermsii DAH] Length = 357 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 106/369 (28%), Positives = 181/369 (49%), Gaps = 26/369 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ V +SGGVDSSV + + GY I L+++ + S G C +D+ V Sbjct: 4 MKIAVLLSGGVDSSVALYTMIQKGYKNIKCYYLKIWLEDELS-YIGECPWEEDINYVEAV 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C NV + + ++ + V+ G TP P + CN+ +KF + D Sbjct: 63 CTKFNVPYEIISLQDEYYKRVVTYAIEELKIGNTPSPDIFCNQRIKFGAFFDKINEH-YD 121 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ TGHY + ++ I+ + D +DQSYFL +++Q+ L FPLGD+ K Sbjct: 122 LIVTGHYAKI-----ENKNNHYILKQAKDKIKDQSYFLSHLSREQISKLHFPLGDLLKTE 176 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNGQILGRHNG 258 +R +A ++ L ++ DSQ ICF+ + KY + +K + +G+I+ G+ILG HNG Sbjct: 177 IRQIAHKIDLPNKNRKDSQGICFLGKIKYDEFIKYHLGEL--KGNIIEQETGKILGTHNG 234 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLE---VHRIYLREINWLGDGL 315 +TIGQR+G+ ++ G P FV D ++ + + + H+ + + NW+ Sbjct: 235 YWFFTIGQRKGIKLSHG-PWFVTEKDIQNNIIYISNSVNYLAQGKHQFLVHKTNWIN--- 290 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 V+ KIR + + ++ +D + VD E+ + G++ GQ C+FY D Sbjct: 291 ---KPVNNIDLSAKIRHGEKKIKCKIEMLKNDIIKVDLEEKDYGISPGQFCIFYQED--- 344 Query: 375 ARVLGGGII 383 LGG I Sbjct: 345 -ECLGGAQI 352 >gi|116515102|ref|YP_802731.1| hypothetical protein BCc_166 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285502|sp|Q057R1|MNMA_BUCCC RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|116256956|gb|ABJ90638.1| tRNA (5-methylaminomethyl-2-thiouridylate) methyltransferase [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 373 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 113/373 (30%), Positives = 189/373 (50%), Gaps = 31/373 (8%) Query: 26 AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINV 85 AMSGGVDSSV A LL + GY V G+ ++ ++ ++ C + D D ++VC T+N+ Sbjct: 13 AMSGGVDSSVSAWLLLKQGYQVEGLFMKNWDEDDSND---YCSSKIDFNDVKKVCKTLNI 69 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATG 144 + ++ E + V + F + G TP P + CN+ +KF+ L + + L +D ATG Sbjct: 70 PLHTINFSEEYWENVFLNFLKEHKKGNTPNPDILCNKIIKFNICLKFSLKYLKSDYFATG 129 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY + + K+ + R D ++DQSYFL+ + L + FPL KK+ +R +A Sbjct: 130 HYAKIK-----KTKKNFYLYRAHDKKKDQSYFLYTLKSKILSKIIFPLAYFKKKKIRKIA 184 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI 264 +++ L + K DS ICF+Q K+ +K+ G I+ ++ + LG H G YTI Sbjct: 185 KKIKLSVYKKKDSTGICFIQPKKFNSFLKQYIPQKI--GKILTMSKEFLGLHLGYEFYTI 242 Query: 265 GQRRGLGVAM------GEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGL 315 GQR+GL + P +VV D + + V L + ++I+++ D + Sbjct: 243 GQRKGLNIGGKKKKKNAYPWYVVKKDIYLNIIFVVQGLRNPYLLSYGFLTKKIHYINDNI 302 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPV---FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDS 372 F KC V+I+ Q+P+ + + ++ + V F+K + V GQ+ VFY + Sbjct: 303 FYFK----KKCVVQIKYRQEPIICEFFKISKKNNYIKVIFKKPILYVTPGQSAVFYLKN- 357 Query: 373 NEARVLGGGIISG 385 + LGG II Sbjct: 358 ---KCLGGSIIKK 367 >gi|168070921|ref|XP_001786986.1| predicted protein [Physcomitrella patens subsp. patens] gi|162660006|gb|EDQ48200.1| predicted protein [Physcomitrella patens subsp. patens] Length = 257 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 102/267 (38%), Positives = 147/267 (55%), Gaps = 14/267 (5%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGGVDSSV A LLK+ GYDVIG+ ++ ++ + G+C A D D RRVC+ I + Sbjct: 1 MSGGVDSSVTALLLKQQGYDVIGIFMKNWDD---TDEFGNCTAEDDAEDVRRVCEQIGIP 57 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 +Y ++E+ + + V F Y G TP P V CNR +KF + L+ LGA +ATGHY Sbjct: 58 YYTVNFEKEYYDKVFSYFLDEYKLGRTPNPDVMCNREIKFGEFLTKALNLGAQYVATGHY 117 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 R + + R +D +DQ+YFL A QQQL FP+G + K VR +A E Sbjct: 118 ARVV-----EQDGVYTLLRGVDSNKDQTYFLNALNQQQLSKAMFPIGHLPKPEVRRIAEE 172 Query: 207 MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGIINYTIG 265 GL A K DS +CF+ + + + + + A G +V + G++ GRH+G++ YT+G Sbjct: 173 AGLYTAKKKDSTGVCFIGERNFKEFLSQYLP--AQSGQMVDIATGEVKGRHDGLMYYTLG 230 Query: 266 QRR---GLGVAMGEPLFVVYLDKNSSR 289 QR+ G GEP FV D + Sbjct: 231 QRQGLGIGGSGSGEPWFVADKDLEKNI 257 >gi|227874682|ref|ZP_03992843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mobiluncus mulieris ATCC 35243] gi|227844725|gb|EEJ54873.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mobiluncus mulieris ATCC 35243] Length = 394 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 136/404 (33%), Positives = 198/404 (49%), Gaps = 44/404 (10%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V++ +SGGVDS+V AA L GYDV ++L S + Q + DAR+V Sbjct: 3 KKVIIGLSGGVDSAVAAARLLEQGYDVHAFFMKLEESDCDGENN---PTAQALADARKVA 59 Query: 81 DTINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + + +V++ +RF VI PF +YA+G TP PCV CNR KF ++ + G Sbjct: 60 AYLGIPPEKFHVWELVDRFERGVITPFVEAYASGLTPNPCVRCNRVFKFGYVVERALREG 119 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK- 196 D +ATGHY R D + R LE+DQSY L + L FPL D++ Sbjct: 120 FDYVATGHYARL-----DHIGDGFRLRRGASLEKDQSYVLAGARAEMLAHAIFPLFDVRD 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K R A+ GL +A K DS DICF+ G ++ G A G IV NG ++G+H Sbjct: 175 KAETRAEAQRRGLPVAHKRDSFDICFIHDGDTRGFLRGKLGG-AQPGAIVDENGAVVGQH 233 Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G YT+GQRRGL + G+P +V +D + + V VGP E+L+VH+I INWL Sbjct: 234 LGAFLYTVGQRRGLHLPRPHEDGQPRYVTGVDVSRNVVTVGPLETLDVHQIRCGRINWLV 293 Query: 313 DGLF------------EDAVVDGFK----CFVKIRSSQDPVPVFVQRND-DGVYVDFEK- 354 + F +A + + V+ R+ P P + +D D + V F + Sbjct: 294 EPGFGRQLLTVSGQESREAPHETKETETPLTVQFRAHSHPEPATFKIDDQDRLTVIFPET 353 Query: 355 -SEVGVASGQACVFYTSDSNEARVLGGGIISGSK----RSDAVE 393 + GVA GQ+ V Y + V+ I+G++ R D E Sbjct: 354 ATIRGVAPGQSLVIYHGN----WVIAQAGITGTQSANPRQDTTE 393 >gi|120603213|ref|YP_967613.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfovibrio vulgaris DP4] gi|205816916|sp|A1VFH0|MNMA_DESVV RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|120563442|gb|ABM29186.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfovibrio vulgaris DP4] Length = 346 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 127/363 (34%), Positives = 171/363 (47%), Gaps = 22/363 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + VAMSGG DS LLK G V G+ + V D R +C Sbjct: 1 MTIAVAMSGGTDSLFALVLLKEQGQQVCGLHARFIPP----------TGHDPVPDIRAMC 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + V +V D E F V+ PF Y G TP PC CN T+KF L +GA Sbjct: 51 DRLGVDLHVVDLTEAFEEHVVRPFMEDYMVGRTPNPCARCNATMKFGLLADAAAHVGAVH 110 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R + + ++ R +D +DQSYFL +L FPLG+ +KE+V Sbjct: 111 LATGHYARLLRHP----RWGTVLQRGVDPAKDQSYFLSLVPHARLEKAVFPLGNWRKEAV 166 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R + S+SQ+ICFV Y +K + G IV G+ +G H G+ Sbjct: 167 RGELARRSIVPPLPSESQEICFVPDDDYRAFLKNRRVRLPGPGPIVTTRGRKIGSHAGLW 226 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YT GQR+GLG+A EPL+VV D ++ ++VG RE+L E+N L +ED Sbjct: 227 QYTEGQRKGLGIAWHEPLYVVGKDMENNMLLVGGREALASPGCVAEEVNLL--VPYEDWP 284 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 + V+IR Q P+ V D +Y F + + A GQ Y E VLGG Sbjct: 285 AE---VAVRIRYRQQPLSARVTLRDGRLYARFREPQPPAARGQVLAVYD---MEHHVLGG 338 Query: 381 GII 383 G+I Sbjct: 339 GVI 341 >gi|291299863|ref|YP_003511141.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Stackebrandtia nassauensis DSM 44728] gi|290569083|gb|ADD42048.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Stackebrandtia nassauensis DSM 44728] Length = 359 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 140/368 (38%), Positives = 190/368 (51%), Gaps = 23/368 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG--SCCAGQDVYDARRVCDTIN 84 MSGGVDS+V AA DG+DV GV L L +S + R G CC +D DARR D I Sbjct: 1 MSGGVDSAVAAARAVADGHDVTGVHLAL-SSNPQTFRSGARGCCTLEDSRDARRAADVIG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV+D ERFR V+ F + YAAG TP PC+ CN +KF+ +L LG D + TG Sbjct: 60 IPFYVWDMAERFREDVVDDFVAEYAAGRTPNPCLRCNEKIKFAAVLDRAVALGFDAVVTG 119 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 H+ R V + R +DL +DQSY L QL FPLGD K+ VR A Sbjct: 120 HHARLADGV---------LRRSVDLGKDQSYVLAVLNAAQLSRAVFPLGDSTKDEVRAEA 170 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHNGIINYT 263 L +ADK DS DICF+ G + + + GDIV +G++LG H+G +T Sbjct: 171 ARRDLAVADKPDSHDICFIADGDTQGFLNQRLG--SKTGDIVDAASGEVLGSHSGAHQFT 228 Query: 264 IGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 IGQR GLG+ G+P +V+ + + V VGPRE+L+VH ++ WL E Sbjct: 229 IGQRHGLGIGRPAADGKPRYVLSITPVDNTVKVGPREALDVHVVHADRPVWLDGVEREGP 288 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 F+C V++R+ + V + D + GVA+GQA V Y D VL Sbjct: 289 ----FECQVQLRAHGEVHDATVTSDGDTITARLHSPAKGVAAGQALVVYQPDPEGDIVLA 344 Query: 380 GGIISGSK 387 I+ ++ Sbjct: 345 SATIARTE 352 >gi|307720640|ref|YP_003891780.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfurimonas autotrophica DSM 16294] gi|306978733|gb|ADN08768.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Sulfurimonas autotrophica DSM 16294] Length = 341 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 122/365 (33%), Positives = 201/365 (55%), Gaps = 33/365 (9%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V+V MSGGVDS++ + LLK GY+V G+ ++L++ + A++ D Sbjct: 4 KVLVGMSGGVDSTITSLLLKEQGYEVEGLYMKLHSKPGYHEIHQ--------ARAQKAAD 55 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + +V D +E F V PF +YA G+TP PC CNR +KF +++ ++GA L Sbjct: 56 FVGIKLHVLDLQETFNEKVFQPFIDTYAEGKTPNPCALCNRNLKFGEMIKFADEIGAQYL 115 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHYI++ DG+ + D +DQSYFLF ++ L L+FPLG+ K+ ++ Sbjct: 116 ATGHYIKT------DGE---YLYAADDDTKDQSYFLFYINREILPRLKFPLGERHKKDIK 166 Query: 202 DLAREM-GLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +LA + GL+ + +++S +ICFV+ Y D++K + G+++ G ++G H G Sbjct: 167 ELAASIKGLESFSSQAESSEICFVETT-YTDLLKDYV-KVDQVGEVLDQEGNVVGEHKGY 224 Query: 260 INYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFED 318 ++YTIG+R+G V +P FV+ ++ ++++VG +E L + + L +N D Sbjct: 225 MHYTIGKRKGFTVHGAHDPHFVLSINPEKNQIVVGKKEDLACYDVKLNNLNMFDDR---- 280 Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 F VK+R V V+ +D Y+ E+S GVA GQA VFY D +++ Sbjct: 281 ---KEFDTTVKLRYRTKAVKCNVKIENDVAYLKLEESVFGVAVGQAAVFYDDD----KLI 333 Query: 379 GGGII 383 GGG I Sbjct: 334 GGGWI 338 >gi|308062619|gb|ADO04507.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori Cuz20] Length = 342 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 126/368 (34%), Positives = 196/368 (53%), Gaps = 32/368 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ V +SGGVDSS A LK G++++G+ L+L+ S K + +A++ C Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG + Sbjct: 53 EFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + R + +D +DQSYFL+A + + L FPLGD+ K+ + Sbjct: 113 IATGHYARVKEI-----DRVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167 Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 + LA +G + +SQ+ICFV++ Y D +K+ + EG + +L G+I+G H Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEIIGTH 224 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G + YTIG+R+G V EP FVV +D + +IVG +E L H + + + D Sbjct: 225 KGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKDF- 283 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + F+K R P FV D+ + V+FE+ GVA GQA V Y D Sbjct: 284 ------KNGEYFIKARYRSVPAKAFVSLKDEAIEVEFEEPFYGVAKGQALVVYKDDI--- 334 Query: 376 RVLGGGII 383 +LGGG+I Sbjct: 335 -LLGGGVI 341 >gi|317178074|dbj|BAJ55863.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori F16] Length = 342 Score = 359 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 125/367 (34%), Positives = 195/367 (53%), Gaps = 30/367 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ V +SGGVDSS A LK G++++G+ L+L+ S K + +A++ C Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG + Sbjct: 53 EFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCTLCNPLMKFGLALDHALKLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + + +D +DQSYFL+A + + L FPLGD+ K+ + Sbjct: 113 IATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167 Query: 201 RDLAREM--GLDIAD-KSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + LA L + +SQ+ICFV++ Y D +K+ + EG + +L G+I+G H Sbjct: 168 KPLALNAMPFLGTLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEIIGTHK 225 Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G + YTIG+R+G V EP FVV +D + +IVG +E L H + + + D Sbjct: 226 GYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKDF-- 283 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + F+K R P FV D+ + V+FE+ GVA GQA V Y D Sbjct: 284 -----KNGEYFIKARYRSVPTKAFVSLRDEAIEVEFEEPFYGVAKGQALVVYKDDI---- 334 Query: 377 VLGGGII 383 +LGGG+I Sbjct: 335 LLGGGVI 341 >gi|313203848|ref|YP_004042505.1| tRNA (5-methylaminomethyL-2-thiouridylate)-methyltransferase [Paludibacter propionicigenes WB4] gi|312443164|gb|ADQ79520.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Paludibacter propionicigenes WB4] Length = 346 Score = 359 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 116/370 (31%), Positives = 177/370 (47%), Gaps = 30/370 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 R+++ MSGG DSSV A LL GY+VIG+T + + + + DA ++ Sbjct: 2 KQRILLGMSGGTDSSVAAILLLEQGYEVIGITFRFWEEGEN----------FHLQDAVKL 51 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + + H +D E FR V+ F Y +G TP PCV CN +K+ +L +LG D Sbjct: 52 AGQLGIQHVTYDAREVFRANVVQYFMDEYLSGRTPFPCVKCNNELKWKLILEEADRLGCD 111 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +A GHY+ + +D + D E+DQS+FL+ TQ QL + FPLG K Sbjct: 112 KVAMGHYVN---IIQED--NHYFVTEGKDPEKDQSFFLWGLTQAQLSRIVFPLGQFHKTD 166 Query: 200 VRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL---EGDIVHLNGQILGR 255 VR +A G +++K DS CF G Y +K+ A G+ + G +LG Sbjct: 167 VRAMAAVRGYKKVSEKKDSLGACFC-SGDYRPFLKKQLAEPDKYIYPGNFMDEEGNVLGT 225 Query: 256 HNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 H+G YT+GQRRGL + + +FV + ++ V++ P S+ +R++N + L Sbjct: 226 HDGFPLYTVGQRRGL-IHLNRKVFVKEIRPETNDVVLAPLRSMYKTEFLIRDVNVVDKSL 284 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374 F F +IR + V ++ V+ + +A GQ VFY Sbjct: 285 FSS----EFDVLCRIRYRKQNTLSRVVFLENRTARVELSEPLESIAPGQTAVFYRD---- 336 Query: 375 ARVLGGGIIS 384 R+LGGG IS Sbjct: 337 GRILGGGFIS 346 >gi|28572507|ref|NP_789287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Tropheryma whipplei TW08/27] gi|81629880|sp|Q83HX5|MNMA_TROW8 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|28410639|emb|CAD67025.1| probable tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Tropheryma whipplei TW08/27] Length = 359 Score = 359 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 140/375 (37%), Positives = 192/375 (51%), Gaps = 27/375 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+V+ AMSGGVDS+V AA G+DV+GV L L SR AS ++G CC +D DA + Sbjct: 1 MKVLAAMSGGVDSAVAAARAVDMGHDVVGVHLAL--SRSASGKRG-CCTPRDAQDAAQAA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 TI + YV+D+ E F+ VI F S Y+AG TP PC+ CN +KFS LL LG D Sbjct: 58 QTIGIPFYVWDFSEEFQEKVIDNFISEYSAGRTPNPCLRCNEHIKFSSLLRRALALGFDA 117 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199 + TGHY R L D + R +DQSY L Q QL FPLG K+ Sbjct: 118 VCTGHYARVFL----DEDGTYQLHRASSWAKDQSYVLAVLQQAQLKHCYFPLGATPSKKL 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A E GL ++ K DS D+CF+ + + +GDI+ GQ +G H G Sbjct: 174 VRQEADERGLKVSKKPDSHDVCFIPSSNTGAWLSQRIGR--RDGDIIDDLGQRVGSHTGA 231 Query: 260 INYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYL--REINWLGD 313 YT+GQR+GL ++ G+P +V+ ++ S+ V+VGPRESL V + W Sbjct: 232 FAYTVGQRKGLRLSSPAWDGKPRYVLDIEPISNTVVVGPRESLRVDELSGAFTTTGWC-- 289 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 +C V++R+ DPV DD + V ++ VA GQ+ Y Sbjct: 290 -----FTSRPIECSVQVRAHSDPVSAIAFIRDDVLVVRPDEPVFAVAKGQSAAIYRG--- 341 Query: 374 EARVLGGGIISGSKR 388 RVLG +I +K+ Sbjct: 342 -TRVLGQLMIDNTKK 355 >gi|297380515|gb|ADI35402.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori v225d] gi|308064111|gb|ADO05998.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori Sat464] Length = 342 Score = 359 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 125/367 (34%), Positives = 195/367 (53%), Gaps = 30/367 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ V +SGGVDSS A LK G++++G+ L+L+ S K + +A++ C Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG + Sbjct: 53 EFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + + +D +DQSYFL+A + + L FPLGD+ K+ + Sbjct: 113 IATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167 Query: 201 RDLAREM--GLDIAD-KSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + LA L + +SQ+ICFV++ Y D +K+ + EG + +L G+I+G H Sbjct: 168 KPLALNAMPFLGTLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEIIGTHK 225 Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G + YTIG+R+G V EP FVV +D + +IVG +E L H + + + D Sbjct: 226 GYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKDF-- 283 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + F+K R P FV D+ + V+FE+ GVA GQA V Y D Sbjct: 284 -----KNGEYFIKARYRSVPTKAFVSLKDEAIEVEFEEPFYGVAKGQALVVYKDDI---- 334 Query: 377 VLGGGII 383 +LGGG+I Sbjct: 335 LLGGGVI 341 >gi|146414139|ref|XP_001483040.1| hypothetical protein PGUG_04995 [Meyerozyma guilliermondii ATCC 6260] Length = 412 Score = 359 bits (923), Expect = 4e-97, Method: Composition-based stats. Identities = 109/387 (28%), Positives = 186/387 (48%), Gaps = 33/387 (8%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 + D +VVAMS GVDSSV AA+ + +V G+ + ++ + + C D Sbjct: 42 QEPDSDDEIVVAMSSGVDSSVAAAIYAKKYKNVRGIYMANWS-------QTAKCTEADWK 94 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133 D +R+C+ I + ++E + + V P S+Y G TP P V CN+ VKF ++ Sbjct: 95 DVQRICEQIQIPCERVNFEREYWSDVFQPMISAYQEGLTPNPDVGCNKYVKFGKMVEHLG 154 Query: 134 RQLGAD---VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190 LG D L TGHY R + ++ +R + R + +DQSY+L L ++ Sbjct: 155 AMLGKDRKWWLVTGHYAR---IMKNENTQRFSLLRGLYPNKDQSYYLSMVPYSILSNVLM 211 Query: 191 PLGDMKKESVRDLAREMGLDIADKSDSQDICFV--QQGKYFDVVKRINAGIALEGDIVHL 248 P+G M K VR +A+++ L +A K DSQ +CFV ++ + + G+IV Sbjct: 212 PIGHMTKPEVRQIAKDLNLLVASKPDSQGLCFVSQEENSFRKFLDEYIE--PNPGNIVTE 269 Query: 249 NGQILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIV---GPRESLEV 300 +G+I G+H G+ + TIGQ+ G+ + G P FV + ++ +++ G SL Sbjct: 270 DGKIWGQHQGLWHATIGQKLGISMPQGNPDYKGVWFVSEKRQATNELVIVKGGNHPSLFN 329 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF-VQRNDDGVYVDFEKSEVGV 359 ++ W+ + A + ++ RS Q P+ V + D + ++ E+ + Sbjct: 330 SKVLAENWTWIDEKNVAKAADMPYH--IQYRSLQFPLKVKAIVPKADSLEIELEEKARAM 387 Query: 360 ASGQACVFYTSDSNEARVLGGGIISGS 386 A GQ V Y ++VLG G+I + Sbjct: 388 APGQNLVLYKD----SQVLGSGVIKRA 410 >gi|17538240|ref|NP_502120.1| hypothetical protein B0035.16 [Caenorhabditis elegans] gi|20141962|sp|Q17440|MTU1_CAEEL RecName: Full=Probable mitochondrial tRNA-specific 2-thiouridylase 1 gi|13548315|emb|CAA97418.2| C. elegans protein B0035.16, confirmed by transcript evidence [Caenorhabditis elegans] Length = 375 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 114/376 (30%), Positives = 182/376 (48%), Gaps = 24/376 (6%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 RVV+ MSGGVDS+V A LLK+ G+DVIG+ + ++ + C +D DAR VCD Sbjct: 3 RVVIGMSGGVDSAVSAFLLKKRGFDVIGLHMINWD--VQEEGTSHCPRSKDESDARNVCD 60 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140 +N+ + ++ + + N V + F +Y G T +P +DCN+++KF + R+ AD Sbjct: 61 RLNIPFHTVNFVKEYWNDVFLKFLENYKNGRTTVPDIDCNQSIKFDVFHKIAREKFNADF 120 Query: 141 LATGHYIRSRL----YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 +ATGHY + D R + D +DQ++FL Q+QL FPLG ++ Sbjct: 121 IATGHYATTNFGDFQQNAKDSDEIR-LFSGKDPLKDQTFFLCTVNQEQLKRAMFPLGSLQ 179 Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGK-YFDVVKRINAGIALEGDIVHLNGQILG 254 K V+ +A E G ++A K +S ICF+ + K + D + G I+ NG +G Sbjct: 180 KSEVKRIAEEQGFQEVAKKPESMGICFIGKKKRFSDFLDEYIE--PKPGRILLKNGSEIG 237 Query: 255 RHNGIINYTIGQR---RGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIYLREI 308 H+GI +TIG+R + L FV ++ ++ +I L R + Sbjct: 238 NHHGIHQFTIGKRINGKYLEARSHLGFFVSHIHSDTGDIIACEGSHHPDLYASRFLINHP 297 Query: 309 NWLGD-GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367 W+ F + F C +I+ + P+P ++ + + V + A GQ CVF Sbjct: 298 KWIRTFDPFNRISSNNFLC--RIQRTHPPIPCVAEKQEQFLSVIPRLALRATAPGQMCVF 355 Query: 368 YTSDSNEARVLGGGII 383 Y + LGGG I Sbjct: 356 YN---TKNECLGGGEI 368 >gi|261838653|gb|ACX98419.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori 51] Length = 342 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 124/367 (33%), Positives = 194/367 (52%), Gaps = 30/367 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ V +SGGVDSS A LK G++++G+ L+L+ S K + +A++ C Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + V D+++ F++ V F S+Y G+TP PC CN +KF L +LG + Sbjct: 53 EFLGIPLEVLDFQKDFKSTVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + + +D +DQSYFL+A + + L FPLGD+ K+ + Sbjct: 113 IATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167 Query: 201 RDLAREM--GLDIAD-KSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + LA L + +SQ+ICFV++ Y D +K+ + EG + +L G+I+G H Sbjct: 168 KPLALNAMPFLGTLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEIIGTHK 225 Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G + YTIG+R+G V EP FVV +D + +IVG +E L H + + + D Sbjct: 226 GYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKDF-- 283 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + F+K R P FV D+ + V+FE+ GVA GQA V Y D Sbjct: 284 -----KNGEYFIKARYRSVPTKAFVSLRDEAIEVEFEEPFYGVAKGQALVVYKDDI---- 334 Query: 377 VLGGGII 383 +LGGG+I Sbjct: 335 LLGGGVI 341 >gi|315587224|gb|ADU41605.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori 35A] Length = 342 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 124/368 (33%), Positives = 196/368 (53%), Gaps = 32/368 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ V +SGGVDSS A LK G++++G+ L+L+ S K + +A++ C Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG + Sbjct: 53 EFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + + +D +DQSYFL+A + + L FPLGD+ K+ + Sbjct: 113 IATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167 Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 + LA +G + +SQ+ICFV++ Y D +K+ + EG + +L G+++G H Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEVIGTH 224 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G + YTIG+R+G V EP FVV +D + +IVG +E L H + + + D Sbjct: 225 KGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKDF- 283 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + F+K R P FV D+ + V+FE+ GVA GQA V Y D Sbjct: 284 ------KNGEYFIKARYRSVPAKAFVSLKDEAIEVEFEEPFYGVAKGQALVVYKDDI--- 334 Query: 376 RVLGGGII 383 +LGGG+I Sbjct: 335 -LLGGGVI 341 >gi|281420586|ref|ZP_06251585.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella copri DSM 18205] gi|281405359|gb|EFB36039.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella copri DSM 18205] Length = 360 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 112/371 (30%), Positives = 165/371 (44%), Gaps = 24/371 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD R+ V +SGGVDSSVV + G +++ K + C + +D+ A Sbjct: 8 KDKRIAVLLSGGVDSSVVVWEFAQLGLHPDCFYIKI---GPEEKEEWDCSSEEDLEMATA 64 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V V D + N V AG TP P V CNR +KF Sbjct: 65 VARKYGCKLQVVDCHHEYWNEVTRYTMEKVKAGFTPNPDVMCNRLIKFGAF-DEKMGHNY 123 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ATGHY ++ D + + D +DQ+ FL QL FP+G K Sbjct: 124 DLIATGHYAQTET----DENGDKWLVTSPDPVKDQTDFLAQIESWQLKKAIFPIGHHIKN 179 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILGRHN 257 VR++A E L A + DSQ ICF+ Q Y D ++R GD++ G+ +G H Sbjct: 180 EVREIAEEEHLINAKRKDSQGICFLGQINYNDYIRRYLGE--KPGDVIEMETGKRIGEHK 237 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314 G+ +TIGQR+GLG G P FV+ D ++ + V L + ++L Sbjct: 238 GLWFHTIGQRKGLGFGGG-PWFVIKKDVENNILYVSHGYDPQSAYKKDFPLHDFHFLTRE 296 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSN 373 V K KIR + + P +++ +DG + + E++ GVA GQ CV Y D + Sbjct: 297 ------VAMQKVTFKIRHTPEYHPATIEKLEDGRWMIHSEEAIHGVAPGQFCVVY--DEH 348 Query: 374 EARVLGGGIIS 384 R G G I+ Sbjct: 349 HHRCYGSGEIT 359 >gi|300871209|ref|YP_003786082.1| tRNA-(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brachyspira pilosicoli 95/1000] gi|300688910|gb|ADK31581.1| tRNA-(5-methylaminomethyl-2-thiouridylate)-methyltransferase [Brachyspira pilosicoli 95/1000] Length = 353 Score = 359 bits (922), Expect = 4e-97, Method: Composition-based stats. Identities = 136/369 (36%), Positives = 200/369 (54%), Gaps = 28/369 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQD---VYDARR 78 ++ V MS GVDS+ A LLK G +V GVT+ L++ + + GSC V + ++ Sbjct: 3 KIAVGMSAGVDSTTTAKLLKEQGNEVFGVTMLLWDGDERAPLAGSCYGPYQNKVVEECKK 62 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG- 137 I + +Y F+ E F+ VI SY G TP PC+ CNR +KF L + G Sbjct: 63 YAAQIGIDYYAFNVSELFQKKVIDYVKDSYKKGLTPNPCIMCNREIKFMALFDAIEKSGL 122 Query: 138 -ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK 196 D ATGHY R D+ ++R I+ R + +DQSYFL+ TQ+QL + FP+ +M Sbjct: 123 TFDKFATGHYAGVRY---DEEEKRYILLRGKNHIKDQSYFLYRLTQEQLSKIMFPMYEMT 179 Query: 197 KESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254 KE R LARE L D+A+K+DSQD + + FD LEG+IVH+ +ILG Sbjct: 180 KEETRSLAREYNLIDVAEKNDSQDFFAGEYHRLFD--------EDLEGNIVHIETNEILG 231 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 +HNGI +YT+GQR+GLG+A EPLF++ LD +++ V VG + + ++ + +INW+ Sbjct: 232 KHNGIWHYTVGQRKGLGIAYKEPLFIISLDSSTNTVYVGNKNHTIIDKVTIYDINWIV-- 289 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPV-FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + F VK RS+ V +D+ + + F + VA GQ+CV Y + Sbjct: 290 ---NKREKEFTALVKTRSAHKGTMANVVPIDDNRIDIHFLEPTGIVAKGQSCVCYDGEIT 346 Query: 374 EARVLGGGI 382 L GGI Sbjct: 347 ----LCGGI 351 >gi|260591395|ref|ZP_05856853.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella veroralis F0319] gi|260536761|gb|EEX19378.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella veroralis F0319] Length = 360 Score = 359 bits (922), Expect = 5e-97, Method: Composition-based stats. Identities = 115/371 (30%), Positives = 165/371 (44%), Gaps = 23/371 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD R+ V +SGGVDSSVV R G +++ K + C + +D+ A Sbjct: 7 KDKRIAVLLSGGVDSSVVVYEFARLGLHPDCFYIKI---GPEEKEEWDCNSEEDLEMATA 63 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V V D + + + V AG TP P V CNR +KF Sbjct: 64 VAHRYGCKLQVIDCHKEYWDQVTSYTMEKVKAGFTPNPDVMCNRLIKFGAF-DAKMGHDY 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ATGHY ++ G R+ + D +DQ+ FL QL FP+G K Sbjct: 123 DLIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIYDWQLKKAIFPIGHYAKN 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR++A + L A + DSQ ICF+ Y + V+R GDI+ L G+ +G H Sbjct: 178 EVREIAEQEHLINARRKDSQGICFLGNIDYNEYVRRYLGEQV--GDIIELETGKKIGEHR 235 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314 G+ +TIGQR+GLG+ G P FVV D + + V L + ++L +G Sbjct: 236 GLWFHTIGQRKGLGLGGG-PWFVVKKDVAQNILYVSHGYDPATTYKKDFPLHDFHFLTEG 294 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 + E K KIR + + V++ DG + +S GVA GQ CV Y D Sbjct: 295 IKELPT----KVTFKIRHTPEYHTATVEQLSDGKCLIHSTESIHGVAPGQFCVIY--DEQ 348 Query: 374 EARVLGGGIIS 384 R G G I+ Sbjct: 349 HHRCFGSGEIT 359 >gi|288924750|ref|ZP_06418687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella buccae D17] gi|288338537|gb|EFC76886.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella buccae D17] Length = 353 Score = 359 bits (922), Expect = 5e-97, Method: Composition-based stats. Identities = 112/371 (30%), Positives = 164/371 (44%), Gaps = 25/371 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD R+ V +SGGVDSSVV L G +++ + + C + +D+ A Sbjct: 2 KDKRIAVLLSGGVDSSVVVCELAALGLHPDCFYIKI---GPEEQEEWDCSSEEDLEMATA 58 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V V D + + V AG TP P V CNR +KF Sbjct: 59 VAARYGCRLQVVDCHREYWDEVTRYTMEKVKAGFTPNPDVMCNRLIKFGAF-DAKMGHDY 117 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ATGHY ++ G R+ + D +DQ+ FL QL FP+G K+ Sbjct: 118 DLIATGHYAQTEWIDG-----RKWLVTSPDPVKDQTDFLAQIYDWQLRKAIFPIGHYMKD 172 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR++A L A + DSQ ICF+ Q Y + ++R GD++ L G+ +G H Sbjct: 173 EVREIAEREHLVNAKRRDSQGICFLGQINYNEYLRRYLGE--QPGDVIELETGKTIGEHR 230 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314 G+ +TIGQR+GLG G P FVV D + + V + + + Sbjct: 231 GLWFHTIGQRKGLGFGGG-PWFVVKKDVGRNVLYVSHGYDPQTAYKQDFRMHDFH----- 284 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSN 373 A +D + KIR + D +P V++ +G+Y V + GVA GQ CV Y D Sbjct: 285 -VLTAPIDSERVTFKIRHTPDYLPATVEKTSEGIYTVHADAPIHGVAPGQFCVVY--DEQ 341 Query: 374 EARVLGGGIIS 384 R G G I+ Sbjct: 342 HHRCFGSGEIT 352 >gi|46579220|ref|YP_010028.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfovibrio vulgaris str. Hildenborough] gi|81404995|sp|Q72DX2|MNMA_DESVH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|46448633|gb|AAS95287.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfovibrio vulgaris str. Hildenborough] gi|311233051|gb|ADP85905.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfovibrio vulgaris RCH1] Length = 346 Score = 359 bits (922), Expect = 5e-97, Method: Composition-based stats. Identities = 127/363 (34%), Positives = 171/363 (47%), Gaps = 22/363 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + VAMSGG DS LLK G V G+ + V D R +C Sbjct: 1 MTIAVAMSGGTDSLFALVLLKEQGQQVCGLHARFIPP----------TGHDPVPDIRAMC 50 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + V +V D E F V+ PF Y G TP PC CN T+KF L +GA Sbjct: 51 DRLGVDLHVVDLTEAFEEHVVRPFMEDYMVGRTPNPCARCNATMKFGLLADAAAHVGAVH 110 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY R + + ++ R +D +DQSYFL +L FPLG+ +KE+V Sbjct: 111 LATGHYARLLRHP----RWGTVLQRGVDPAKDQSYFLSLVPHARLEKAVFPLGNWRKEAV 166 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R + S+SQ+ICFV Y +K + G IV G+ +G H G+ Sbjct: 167 RGELARRSIVPPLPSESQEICFVPDDDYRAFLKDRRVRLPGPGPIVTTRGRKIGSHAGLW 226 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YT GQR+GLG+A EPL+VV D ++ ++VG RE+L E+N L +ED Sbjct: 227 QYTEGQRKGLGIAWHEPLYVVGKDMENNMLLVGGREALASPGCVAEEVNLL--VPYEDWP 284 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 + V+IR Q P+ V D +Y F + + A GQ Y E VLGG Sbjct: 285 AE---VAVRIRYRQQPLSARVTLRDGRLYARFREPQPPAARGQVLAVYD---MEHHVLGG 338 Query: 381 GII 383 G+I Sbjct: 339 GVI 341 >gi|259506284|ref|ZP_05749186.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium efficiens YS-314] gi|259166064|gb|EEW50618.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Corynebacterium efficiens YS-314] Length = 359 Score = 359 bits (922), Expect = 5e-97, Method: Composition-based stats. Identities = 136/369 (36%), Positives = 191/369 (51%), Gaps = 19/369 (5%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS-CCAGQDVYDARRVCDTINV 85 MSGGVDS+V A+ G++V+GV L L ++ + CC+ +D DARRVCD + + Sbjct: 1 MSGGVDSAVAASRAVAAGHEVVGVHLALSRDPQSVRESSRGCCSLEDSADARRVCDKLGI 60 Query: 86 SHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGH 145 YV+D+ +RF+ VI F SYA GETP PC+ CN +KF+ LL LG D + TGH Sbjct: 61 PFYVWDFSDRFKEDVIDDFIDSYAIGETPNPCLRCNEKIKFAALLERGIALGFDAVVTGH 120 Query: 146 YIR-SRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 Y R ++ G DG + R +D+ +DQSY L ++ FP+GD K +R+ A Sbjct: 121 YARLTQPADGGDG----YLRRGVDMNKDQSYVLGVLGAHEIAHCMFPVGDTVKPEIREEA 176 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI 264 G +A K DS DICF+ G + + G IV G L H G+ +TI Sbjct: 177 AASGFSVAKKPDSYDICFIPDGNTQAFLGKHIGL--RPGMIVDREGTTLREHAGVHEFTI 234 Query: 265 GQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 GQR+GL + A G P +V +D + V VG RE LEV I+ + +L A+ Sbjct: 235 GQRKGLDIKEPAADGRPRYVTDIDAATGTVTVGSREDLEVGVIHADRLKFLH-----PAM 289 Query: 321 VDGFKCFVKIRSSQDPVPV--FVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 C V++R+ V + R D + +D +S GVA GQA V Y D VL Sbjct: 290 DGELDCEVQVRAHGGVVKCHARIDRTADTMRLDLAESLSGVARGQAAVLYLPDPEGDIVL 349 Query: 379 GGGIISGSK 387 G G I G++ Sbjct: 350 GSGTICGTE 358 >gi|219559055|ref|ZP_03538131.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mycobacterium tuberculosis T17] Length = 396 Score = 359 bits (922), Expect = 5e-97, Method: Composition-based stats. Identities = 133/358 (37%), Positives = 186/358 (51%), Gaps = 22/358 (6%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARRVCDTIN 84 MSGGVDSSV AA + G++V+GV + L ++ + R GS CC+ +D DARRV D + Sbjct: 1 MSGGVDSSVAAARMVDAGHEVVGVHMAL-STAPGTLRTGSRGCCSKEDAADARRVADVLG 59 Query: 85 VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATG 144 + YV+D+ E+F+ VI F SSYA GETP PCV CN+ +KF+ L + LG D +ATG Sbjct: 60 IPFYVWDFAEKFKEDVINDFVSSYARGETPNPCVRCNQQIKFAALSARAVALGFDTVATG 119 Query: 145 HYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLA 204 HY R + R +D ++DQSY L T QQL FP+GD K +R A Sbjct: 120 HYARLS---------GGRLRRAVDRDKDQSYVLAVLTAQQLRHAAFPIGDTPKRQIRAEA 170 Query: 205 REMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYTI 264 GL +A+K DS DICF+ G + G +V +G +L H+G+ +TI Sbjct: 171 ARRGLAVANKPDSHDICFIPSGNTKAFLGERIG--VRRGVVVDADGVVLASHDGVHGFTI 228 Query: 265 GQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 GQRRGLG+A G P +V +D +++ V VG L+V + R + A Sbjct: 229 GQRRGLGIAGPGPNGRPRYVTAIDADTATVHVGDVTDLDVQTLTGRAPVFTAGA----AP 284 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVL 378 C V++R+ + V + D ++V GVA GQ V Y D VL Sbjct: 285 SGPVDCVVQVRAHGETVSAVAELIGDALFVQLHAPLRGVARGQTLVLYRPDPAGDEVL 342 >gi|219126278|ref|XP_002183388.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217405144|gb|EEC45088.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 368 Score = 359 bits (922), Expect = 5e-97, Method: Composition-based stats. Identities = 110/377 (29%), Positives = 166/377 (44%), Gaps = 25/377 (6%) Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82 V + +SGGVDSSV LL + GYDV L+++ G C D + VC+ Sbjct: 1 VALLLSGGVDSSVALNLLVQQGYDVTAFYLKIWL-EDELAHLGHCPWEDDYRVCQEVCEQ 59 Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142 + + +++ VI G TP P + CN VKF Q D +A Sbjct: 60 AGIPLETVSLQNAYKSRVIAYTVHEAEQGRTPNPDIMCNSRVKFGCFYEAIDQREFDFVA 119 Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 +GHY + V D + R D +DQSYFL TQ QL + FP+G ++K VRD Sbjct: 120 SGHYAQ---LVKDTETGSMRLLRAPDPIKDQSYFLCTLTQDQLQRVLFPIGHLQKSQVRD 176 Query: 203 LAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGIIN 261 LA E L + DSQ +CF+ + K+ + + G IV G ++G+H+G+ Sbjct: 177 LADEFILPNRLRPDSQGLCFLGKVKFDEFLAVYLG--TRPGPIVDAGTGDVVGQHHGVWY 234 Query: 262 YTIGQRRGLG------VAMGEPLFVVYLDKNSSRVIVGP--RESLEV---HRIYLREINW 310 +T+GQR+G+G P +VV D V E + + I+W Sbjct: 235 HTVGQRKGIGRVLDPLATSRGPWYVVAKDPGKDVVYCSNQYDEDIFTASRSEFAVENIHW 294 Query: 311 LGDGLFEDAVV-DGFKCFVKIRSSQDPVPVFVQRNDDGVY--VDFEKSEVGVASGQACVF 367 + + + DG + +KIR D V ++ + V + + G+A GQ VF Sbjct: 295 IAGQAPPNLLKGDGGRFVMKIRHGPDLVKGTLRLTNTAGEGDVKLDSKDGGLAPGQYVVF 354 Query: 368 YTSDSNEARVLGGGIIS 384 Y + LG G+IS Sbjct: 355 YKDE----ECLGAGVIS 367 >gi|10190804|emb|CAB65878.1| EG:BACR7A4.8 [Drosophila melanogaster] Length = 371 Score = 359 bits (922), Expect = 5e-97, Method: Composition-based stats. Identities = 99/361 (27%), Positives = 162/361 (44%), Gaps = 21/361 (5%) Query: 32 DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91 DS+V A LL G+ V+GV ++ ++ G C D+ DA C + V + Sbjct: 14 DSAVSAHLLAEQGFKVLGVFMRNWDEADEV---GRCSGEADLKDAEWACRQLGVELRQVN 70 Query: 92 YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSR 150 Y + AV F Y G TP P + CNR +KF + LG D +ATGHY R+ Sbjct: 71 YVREYWTAVFSQFLDDYQMGLTPNPDILCNRHIKFDLFHKHALENLGYDAVATGHYARNS 130 Query: 151 LYVGDDG---KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREM 207 L +G + P D +DQ++FL +++ L FPLGD +K V+DLA+++ Sbjct: 131 LGNYLEGIASNNDARLLIPADTFKDQTFFLAGISRKALQRTMFPLGDFQKSQVKDLAKKI 190 Query: 208 GLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIINYTIG 265 G +A K +S ICFV + + D ++ + G + ++ G ++G H GI +T+G Sbjct: 191 GFQRLAKKKESTGICFVGKRNFKDFIQEYI--TSKRGPFLDIDSGAVVGHHEGIHQWTVG 248 Query: 266 QRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFE-DAVV 321 QR L + +P FV + S+ + V +L I + NWL + + Sbjct: 249 QRCRLSSFL-QPYFVARKEAASNTIYVASGHNHPALLSTHIAVDPPNWLCSKSQQILSDT 307 Query: 322 DGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 +C + + ++ V + + + V+ + + GQ VFY LG Sbjct: 308 GSLRCRFRFQHTKPLVDCQLSISPSNTFLVELDAPLRAITPGQYAVFYDD----TACLGS 363 Query: 381 G 381 Sbjct: 364 A 364 >gi|299147036|ref|ZP_07040103.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 3_1_23] gi|298514921|gb|EFI38803.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides sp. 3_1_23] Length = 384 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 111/405 (27%), Positives = 176/405 (43%), Gaps = 59/405 (14%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV++ MSGG DSSV A L GY+VIGVT + Y +++ + DAR Sbjct: 3 ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFYELNGSTEY---------LEDARN 53 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + H +D E F +I F Y AG TP+PC CN +K+ L + ++G Sbjct: 54 LAERLGIRHITYDAREIFNKQIIDYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGV 113 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY ++ + D ++DQ++FL+ Q LC + P+G++ K Sbjct: 114 FYIATGHYAQNIQL-----NNTFYITYAADSDKDQTFFLWGLKQDILCRMLLPMGNITKV 168 Query: 199 SVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINA-------------------- 237 R A E G +A K DS +CF Y +K A Sbjct: 169 EARAWAAEHGFRKVATKKDSIGVCFCPM-DYRTFLKNWLAQNSEALAEEEQMMGENQALV 227 Query: 238 --------------GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYL 283 G V G + H G YTIGQRRGLG+ + P+FV + Sbjct: 228 GDWQALVGSNQAGLNKVKRGRFVDEKGDFIAWHEGYPFYTIGQRRGLGIHLNRPVFVKEI 287 Query: 284 DKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR 343 + + V++ +LE ++L++ N + ++ + VKIR + + Sbjct: 288 NPEKNEVVLASLSALEKTEMWLKDWNLVN----QERTLGHSDIIVKIRYRKQENHATITI 343 Query: 344 NDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387 D ++V + +A GQA FY +LGGGII ++ Sbjct: 344 TPDHLLHVQLHEPLTAIAPGQAAAFYKD----GLLLGGGIIVNAR 384 >gi|28493382|ref|NP_787543.1| tRNA-specific 2-thiouridylase MnmA [Tropheryma whipplei str. Twist] gi|81436231|sp|Q820Y1|MNMA_TROWT RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|28476423|gb|AAO44512.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Tropheryma whipplei str. Twist] Length = 359 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 139/375 (37%), Positives = 191/375 (50%), Gaps = 27/375 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M+V+ AMSGGVDS+V AA G+DV+GV L L SR AS ++G CC +D DA + Sbjct: 1 MKVLAAMSGGVDSAVAAARAVDMGHDVVGVHLAL--SRSASGKRG-CCTPRDAQDAAQAA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 I + YV+D+ E F+ VI F S Y+AG TP PC+ CN +KFS LL LG D Sbjct: 58 QAIGIPFYVWDFSEEFQEKVIDNFISEYSAGRTPNPCLRCNEHIKFSSLLRRALALGFDA 117 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KES 199 + TGHY R L D + R +DQSY L Q QL FPLG K+ Sbjct: 118 VCTGHYARVFL----DEDGTYQLHRASSWAKDQSYVLAVLQQAQLKHCYFPLGATPSKKL 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR A E GL ++ K DS D+CF+ + + +GDI+ GQ +G H G Sbjct: 174 VRQEADERGLKVSKKPDSHDVCFIPSSNTGAWLSQRIGR--RDGDIIDDLGQRVGSHTGA 231 Query: 260 INYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYL--REINWLGD 313 YT+GQR+GL ++ G+P +V+ ++ S+ V+VGPRESL V + W Sbjct: 232 FAYTVGQRKGLRLSSPAWDGKPRYVLDIEPISNTVVVGPRESLRVDELSGAFTTTGWC-- 289 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 +C V++R+ DPV DD + V ++ VA GQ+ Y Sbjct: 290 -----FTSRPIECSVQVRAHSDPVSAIAFIRDDVLVVRPDEPVFAVAKGQSAAIYRG--- 341 Query: 374 EARVLGGGIISGSKR 388 RVLG +I +K+ Sbjct: 342 -TRVLGQLMIDNTKK 355 >gi|217033651|ref|ZP_03439079.1| hypothetical protein HP9810_899g87 [Helicobacter pylori 98-10] gi|216943997|gb|EEC23431.1| hypothetical protein HP9810_899g87 [Helicobacter pylori 98-10] Length = 342 Score = 359 bits (921), Expect = 6e-97, Method: Composition-based stats. Identities = 124/368 (33%), Positives = 195/368 (52%), Gaps = 32/368 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ V +SGGVDSS A LK G++++G+ L+L+ S K + +A++ C Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG + Sbjct: 53 EFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + + +D +DQSYFL+A + + L FPLGD+ K+ + Sbjct: 113 IATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167 Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 + LA +G + +SQ+ICFV++ Y D +K+ + EG + +L G+I+G H Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEIIGTH 224 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G + YTIG+R+G V EP FVV +D + +IVG +E L H + + + D Sbjct: 225 KGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKDF- 283 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + F+K R P V D+ + V+FE+ GVA GQA V Y D Sbjct: 284 ------KNGEYFIKARYRSVPTKAHVSLRDEAIEVEFEEPFYGVAKGQALVVYKDDI--- 334 Query: 376 RVLGGGII 383 +LGGG+I Sbjct: 335 -LLGGGVI 341 >gi|188528124|ref|YP_001910811.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori Shi470] gi|229486342|sp|B2UV99|MNMA_HELPS RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|188144364|gb|ACD48781.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori Shi470] Length = 342 Score = 359 bits (921), Expect = 6e-97, Method: Composition-based stats. Identities = 124/367 (33%), Positives = 194/367 (52%), Gaps = 30/367 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ V +SGGVDSS A LK G++++G+ L+L+ S K + +A++ C Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG + Sbjct: 53 EFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + + +D +DQSYFL+A + + L FPLGD+ K+ + Sbjct: 113 IATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167 Query: 201 RDLAREM--GLDIAD-KSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + LA L + +SQ+ICFV++ Y D +K+ + EG + +L G+I+G H Sbjct: 168 KPLALNAMPFLGTLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEIIGTHK 225 Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G + YTIG+R+G V EP FVV +D + +IVG +E L H + + + D Sbjct: 226 GYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKDF-- 283 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + +K R P FV D+ + V+FE+ GVA GQA V Y D Sbjct: 284 -----KNGEYSIKARYRSVPTKAFVSLRDEAIEVEFEEPFYGVAKGQALVVYKDDI---- 334 Query: 377 VLGGGII 383 +LGGG+I Sbjct: 335 LLGGGVI 341 >gi|152992636|ref|YP_001358357.1| tRNA-specific 2-thiouridylase MnmA [Sulfurovum sp. NBC37-1] gi|205828996|sp|A6Q941|MNMA_SULNB RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|151424497|dbj|BAF72000.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Sulfurovum sp. NBC37-1] Length = 340 Score = 359 bits (921), Expect = 6e-97, Method: Composition-based stats. Identities = 123/367 (33%), Positives = 191/367 (52%), Gaps = 33/367 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +V+V +SGGVDS+V A LL+++GY+V GV ++L++ + ++V Sbjct: 3 KGKVLVGLSGGVDSTVTAVLLQKEGYEVEGVYMRLHDKP--------GYHEDNWGKVQKV 54 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 D + + + D E F V F SY G TP PCV CNRT+KF ++ LG + Sbjct: 55 ADYLRIKVHFHDLSEAFNANVYEYFVESYKKGLTPNPCVMCNRTIKFGKMVEFADTLGIE 114 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY++ DG + D +DQSYFL ++ L L FPLG K+ Sbjct: 115 FVATGHYLQC------DGN---YIYAAEDAGKDQSYFLSEVKKEVLPRLLFPLGTWIKDD 165 Query: 200 VRDLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 V+ A + + + A +++S +ICFV+ Y +V+ + I + G+ V G ++G H Sbjct: 166 VKAYAANIDVLKEFATQAESSEICFVENS-YDEVLAKHM-NIDMPGETVDTQGNVVGTHK 223 Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G ++YTIG+RRG V +P FV+ + S++++VG RE LE + +++IN LF Sbjct: 224 GYMHYTIGKRRGFFVNGAHDPHFVIDIKPESNQIVVGTREKLEENAFEVKQIN-----LF 278 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 ED V F C VK+R VP ++ + V + G+A Q FY R Sbjct: 279 EDLV--EFDCEVKVRYRTRAVPCHIKIEGERATVVLTEPVFGLAKEQVAAFYDG----RR 332 Query: 377 VLGGGII 383 +LGGG+I Sbjct: 333 LLGGGVI 339 >gi|4155868|gb|AAD06840.1| putative TRNA (5-METHYLAMINOMETHYL-2-THIOURIDYLATE)-METHYLTRANSFERASE [Helicobacter pylori J99] Length = 360 Score = 359 bits (921), Expect = 6e-97, Method: Composition-based stats. Identities = 125/381 (32%), Positives = 201/381 (52%), Gaps = 31/381 (8%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 RL ++ ++ K M++ V +SGGVDSS A LK G++++G+ L+L+ S K Sbjct: 6 ARLRAITFNERLK-MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY-- 62 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 + +A++ C+ + + V D+++ F++AV F ++Y G+TP PC CN +KF Sbjct: 63 ------IKNAQKACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKF 116 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L +LG + +ATGHY R + + + +D +DQSYFL+A + + Sbjct: 117 GLALDHALKLGCEKIATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIA 171 Query: 187 DLRFPLGDMKKESVRDLAREM--GLDIAD-KSDSQDICFVQQGKYFDVVKRINAGIALEG 243 L FPLGD+ K+ ++ LA L + +SQ+ICFV++ Y D +K+ + EG Sbjct: 172 KLVFPLGDLLKKDIKPLALNAMPFLGTLETYKESQEICFVEKS-YIDTLKKHVE-VEKEG 229 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302 + +L G+++G H G + YTIG+R+G V EP FVV +D + +IVG +E L H Sbjct: 230 VVKNLQGEVIGTHKGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHS 289 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362 + + + D + F+K R P FV D + V+F++ GVA G Sbjct: 290 LKAKNKSLTKDF-------KDGEYFIKARYRSVPTKAFVSLKDGMIEVEFKEPFYGVAKG 342 Query: 363 QACVFYTSDSNEARVLGGGII 383 QA V Y D +LGGG+I Sbjct: 343 QALVVYKDDI----LLGGGVI 359 >gi|269977689|ref|ZP_06184653.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mobiluncus mulieris 28-1] gi|269934117|gb|EEZ90687.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mobiluncus mulieris 28-1] Length = 394 Score = 359 bits (921), Expect = 7e-97, Method: Composition-based stats. Identities = 134/404 (33%), Positives = 193/404 (47%), Gaps = 44/404 (10%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V++ +SGGVDS+V AA L GYDV ++L S + Q + DAR+V Sbjct: 3 KKVIIGLSGGVDSAVAAARLLEQGYDVHAFFMKLEESDCDGE---DNPTAQALADARKVA 59 Query: 81 DTINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + + +V++ +RF VI PF +YA+G TP PCV CNR KF ++ + G Sbjct: 60 AYLGIPPEKFHVWELVDRFERGVITPFVEAYASGLTPNPCVRCNRVFKFGYVVERALREG 119 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK- 196 D +ATGHY D + R LE+DQSY L + L FPL D++ Sbjct: 120 FDYVATGHYA-----CLDHIGDGFRLRRGASLEKDQSYVLAGARAEMLAHAIFPLFDVRD 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K R A+ GL +A K DS DICF+ G ++ G A G IV NG ++G+H Sbjct: 175 KAETRSEAQRRGLPVAHKRDSFDICFIHDGDTRGFLRGKLGG-AQPGAIVDENGAVVGQH 233 Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G YT+GQRRGL + G+P +V +D N + V VGP E+L+VH+I INWL Sbjct: 234 LGAFLYTVGQRRGLHLPRPHEDGQPRYVTGVDVNRNVVTVGPLETLDVHQIRCGRINWLV 293 Query: 313 DG----------------LFEDAVVDGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEK- 354 + + V+ R+ P P + +D D + V F + Sbjct: 294 EPGFGRQLLTVSGQESREAPHETKETEMPLTVQFRAHSHPEPATFKIDDQDRLTVIFPET 353 Query: 355 -SEVGVASGQACVFYTSDSNEARVLGGGIISGSK----RSDAVE 393 + GVA GQ+ V Y + V+ I+G++ R D E Sbjct: 354 ATIRGVAPGQSLVIYHGN----WVIAQAGITGTQSANPRQDTTE 393 >gi|306817970|ref|ZP_07451707.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mobiluncus mulieris ATCC 35239] gi|304649238|gb|EFM46526.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mobiluncus mulieris ATCC 35239] Length = 394 Score = 359 bits (921), Expect = 7e-97, Method: Composition-based stats. Identities = 136/404 (33%), Positives = 197/404 (48%), Gaps = 44/404 (10%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V++ +SGGVDS+V AA L GYDV ++L S + Q + DAR+V Sbjct: 3 KKVIIGLSGGVDSAVAAARLLEQGYDVHAFFMKLEESDCDGE---DNPTAQALADARKVA 59 Query: 81 DTINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + + +V++ +RF VI PF +YA+G TP PCV CNR KF ++ + G Sbjct: 60 AYLGIPPEKFHVWELVDRFERGVITPFVEAYASGLTPNPCVRCNRVFKFGYVVERALREG 119 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK- 196 D +ATGHY D + R LE+DQSY L + L FPL D++ Sbjct: 120 FDYVATGHYA-----CLDHIGDGFRLRRGASLEKDQSYVLAGARAEMLAHAIFPLFDVRD 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K R A+ GL +A K DS DICF+ G ++ G A G IV NG ++G+H Sbjct: 175 KAETRAEAQRRGLPVAHKRDSFDICFIHDGDTRGFLRGKLGG-AQPGAIVDENGAVVGQH 233 Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G YT+GQRRGL + G+P +V +D N + V VGP E+L+VH+I INWL Sbjct: 234 LGAFLYTVGQRRGLHLPRPHEDGQPRYVTGVDVNRNVVTVGPLETLDVHQIRCGRINWLV 293 Query: 313 DGLF------------EDAVVDGFK----CFVKIRSSQDPVPVFVQRND-DGVYVDFEK- 354 + F +A + + V+ R+ P P + +D D + V F + Sbjct: 294 EPGFGRQLLTVSGQESREAPHETKETETPLTVQFRAHSHPEPATFKIDDQDRLTVIFPET 353 Query: 355 -SEVGVASGQACVFYTSDSNEARVLGGGIISGSK----RSDAVE 393 + GVA GQ+ V Y + V+ I+G++ R D E Sbjct: 354 ATIRGVAPGQSLVIYHGN----WVIAQAGITGTQSANPRQDTTE 393 >gi|154496175|ref|ZP_02034871.1| hypothetical protein BACCAP_00459 [Bacteroides capillosus ATCC 29799] gi|150274730|gb|EDN01794.1| hypothetical protein BACCAP_00459 [Bacteroides capillosus ATCC 29799] Length = 342 Score = 358 bits (920), Expect = 7e-97, Method: Composition-based stats. Identities = 125/368 (33%), Positives = 186/368 (50%), Gaps = 27/368 (7%) Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTI 83 ++ +SGGVDS+V A LL RD Y+V G+ L + G DA V + Sbjct: 1 MLGLSGGVDSAVAAQLLSRD-YEVHGLYLDI------------GLGGTGQADAAAVAHRL 47 Query: 84 NVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLAT 143 ++ + D + N V PFA+ Y AG TPLPC CN TVKF LL++ ++GA+ +AT Sbjct: 48 DIPFHTADIRQELENQVCGPFAADYLAGRTPLPCARCNPTVKFPALLALAEEIGAEKVAT 107 Query: 144 GHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDL 203 GHY R+ L R++ R DQSY L Q L + FPLGD +K +VR + Sbjct: 108 GHYARTALAPD-----GRVLLRKGLPANDQSYMLSRLPQNILQKVIFPLGDYEKTAVRAM 162 Query: 204 AREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIINYT 263 A + L +ADK DS +ICF+ G Y ++ + GD V +G++LGRH GI YT Sbjct: 163 AGQAELPVADKPDSMEICFIPDGDYAAWLEH-RGTVPPAGDFVDRDGRVLGRHGGIHRYT 221 Query: 264 IGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDG 323 +GQ RGLGV+ +V +D RV++ L R+Y ++NWL D + + Sbjct: 222 LGQGRGLGVSGPHKYYVTEIDPAHDRVVLSDGSDLMARRVYCADMNWLSV----DGLPEP 277 Query: 324 FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 + V++R S+ + + + + V ++ GQ V Y D A G I Sbjct: 278 LEVTVRLRHSKTELAAVARADGENVVLEMLDPARAPTPGQLAVLYQGDIVAA----SGWI 333 Query: 384 SGSKRSDA 391 +G++R+ A Sbjct: 334 TGAERTAA 341 >gi|329954114|ref|ZP_08295209.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides clarus YIT 12056] gi|328528091|gb|EGF55071.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides clarus YIT 12056] Length = 350 Score = 358 bits (920), Expect = 7e-97, Method: Composition-based stats. Identities = 114/356 (32%), Positives = 170/356 (47%), Gaps = 23/356 (6%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 RV++ MSGG DSSV A L+ GY+V GVT + Y + + + DAR Sbjct: 2 NSKERVLLGMSGGTDSSVTAMKLQEAGYEVTGVTFRFYEAD---------GKAEYLEDAR 52 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + D + + H ++D + FR +I F Y AG TP+PC+ CN +K+ L + + G Sbjct: 53 TLADRLGIEHIIYDARKLFRERIIRYFIDEYLAGHTPVPCILCNNELKWKLLAEIADEKG 112 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 ++TGHY+R L + D ++DQ++FL+ Q L + P+GDM K Sbjct: 113 IYWISTGHYVRKLLLEDT-----YYIAPAADRDKDQTFFLWGLKQDILKRMLLPMGDMTK 167 Query: 198 ESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD--IVHLNGQILG 254 E R A G +A K DS +CF Y +KR L G + G+ILG Sbjct: 168 EEARAYAAGRGFMRVATKKDSIGVCFCPL-DYRSFLKREVPAEQLPGRGHFLDEKGEILG 226 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H G YTIGQRRGLG+ + +FV + +++ V++ P SL + +YL++ N + Sbjct: 227 WHEGYPFYTIGQRRGLGLHLNRAVFVKEIKMDTNEVVLAPLASLYKNEMYLKDWNLIS-- 284 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYT 369 V+ VKIR + V DG + V + +A GQA FY Sbjct: 285 --THRVLGAETVIVKIRYRKQANRCMVTLEGDGHLRVSLLEPLESIAPGQAAAFYD 338 >gi|317052362|ref|YP_004113478.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfurispirillum indicum S5] gi|316947446|gb|ADU66922.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Desulfurispirillum indicum S5] Length = 345 Score = 358 bits (920), Expect = 7e-97, Method: Composition-based stats. Identities = 121/367 (32%), Positives = 186/367 (50%), Gaps = 32/367 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V+VAMSGGVDSS+ LL GY V G ++L+ + + Q++ RV Sbjct: 6 KKVLVAMSGGVDSSMTTKLLLEQGYPVEGCYMKLHGNEQ--------MHEQNIARVERVA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 N+ +V D ++ F +V PF Y+ G+TP PC CNR +KF L R+L Sbjct: 58 RYFNIPWHVLDRQDLFHQSVYQPFIDIYSQGQTPNPCTFCNRLIKFGTLFEFARELDCHH 117 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 LATGHY++ DG+ D +DQSYFLF + + L FPLG +K V Sbjct: 118 LATGHYVKC------DGQYIYQ---GDDPGKDQSYFLFNIEPRIIPHLLFPLGSWRKSDV 168 Query: 201 RDLAREMGL--DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 + +A ++ L +A + +S +ICFV+ Y DV++ + G ++ +G ++G H G Sbjct: 169 KAMAADIPLLASLATQKESSEICFVEDS-YIDVLREHLQ-VDQPGKVLDTSGNVVGSHRG 226 Query: 259 IINYTIGQRRGLGVAMGE-PLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFE 317 ++YT+GQR+G V + L+V + ++ ++VG RE + + R +R++N LF Sbjct: 227 YMHYTVGQRKGFDVPLSHTALYVKQILPKTNELVVGTREEINLQRFAVRDLN-----LFL 281 Query: 318 DAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEAR 376 F C VK+R P V G ++ E+ E +A GQA FY R Sbjct: 282 PDPGQEFTCEVKVRYRNPKAPARVLLGAGGSATIELERPEYAIAPGQAAAFYEG----TR 337 Query: 377 VLGGGII 383 +LGGG I Sbjct: 338 LLGGGYI 344 >gi|329961014|ref|ZP_08299293.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides fluxus YIT 12057] gi|328532300|gb|EGF59104.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides fluxus YIT 12057] Length = 355 Score = 358 bits (920), Expect = 8e-97, Method: Composition-based stats. Identities = 113/367 (30%), Positives = 169/367 (46%), Gaps = 18/367 (4%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + V +SGGVDSSVV LL GY +++ + C A +D+ A + Sbjct: 1 MNIAVLLSGGVDSSVVVHLLCEQGYRPSLFYIRI---GRDDTDYMDCSAEEDLEMASAIA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +S V D + + V G TP P V CN+ +KF D Sbjct: 58 RRYGLSLEVVDLHREYWDNVAAYAIDKIRRGLTPNPDVMCNKLIKFGCF-ERQVGREFDF 116 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY + L G + + +D +DQ+ FL Q+ L FPLG + K+ V Sbjct: 117 TATGHYATTVLLDG-----KTWLGTAVDPIKDQTDFLAQIDYLQVSRLMFPLGGLMKQEV 171 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259 RD+A GL A + DSQ ICF+ + Y D V+R EGDI+ L G+ LG+H G Sbjct: 172 RDIALRAGLPSARRRDSQGICFLGKINYNDFVRRFLGE--REGDIIELETGKKLGKHRGY 229 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV---HRIYLREINWLGDGLF 316 +TIGQR+GLG+ G P FVV D + + V E+ + +R+ +++ D + Sbjct: 230 WFHTIGQRKGLGLGGG-PWFVVRKDIEGNVIYVSRGYDTELQFGNEFRMRDFHFITDNPW 288 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + + KIR + + + + R +G + ++ G+A GQ V Y DS Sbjct: 289 KKEENGAVEVTFKIRHTPEFMKGRLFREPEGYRIVSDEKLQGIAPGQFGVIY--DSASRL 346 Query: 377 VLGGGII 383 +G G I Sbjct: 347 CVGSGEI 353 >gi|288799734|ref|ZP_06405193.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella sp. oral taxon 299 str. F0039] gi|288332982|gb|EFC71461.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella sp. oral taxon 299 str. F0039] Length = 357 Score = 358 bits (920), Expect = 8e-97, Method: Composition-based stats. Identities = 107/376 (28%), Positives = 172/376 (45%), Gaps = 25/376 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 +++N +D ++ V +SGGVDSSVV L + G +++ + + C + +D+ Sbjct: 1 MNENLQDKKIAVLLSGGVDSSVVLYELVQQGLKPDCFYIKI---GPEQEEEWDCSSEEDL 57 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 A V V D + + + V AG TP P V CNR +KF Sbjct: 58 EMATAVAHRYGCKLEVIDCHKEYWDQVTKYTMDKVKAGFTPNPDVMCNRLIKFGAFHDK- 116 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + D++ATGHY ++ + G ++ + D +DQ+ FL QL FP+G Sbjct: 117 KGKDYDLIATGHYAQTEIING-----KKWLVTSPDPVKDQTDFLAQIYDWQLKKAIFPIG 171 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252 +K+ VR +A L A + DSQ ICF+ + Y D +++ G+++ L + Sbjct: 172 HFQKDEVRVIAEREHLINAKRKDSQGICFLGKINYNDYIRKYLGENI--GEVLELQTNKR 229 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREIN 309 +G+H G+ YTIGQR GLG G P FVV D N++ + V + + + Sbjct: 230 IGQHKGLWFYTIGQRHGLGFGGG-PWFVVKKDVNNNILYVSKGYEPSSAFKSEFGVSDFH 288 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFY 368 +L + VD KIR + + +++ N++ + E GVA GQ CV Y Sbjct: 289 FLTEE------VDLSNVTFKIRHTPEFHKARMEKINNNEYRLYSECPIHGVAPGQFCVVY 342 Query: 369 TSDSNEARVLGGGIIS 384 D R +G G IS Sbjct: 343 --DEEHHRCIGSGEIS 356 >gi|317181057|dbj|BAJ58843.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori F32] Length = 342 Score = 358 bits (920), Expect = 8e-97, Method: Composition-based stats. Identities = 123/368 (33%), Positives = 194/368 (52%), Gaps = 32/368 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ V +SGGVDSS A LK G++++G+ L+L+ S K + +A++ C Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG + Sbjct: 53 EFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + + +D +DQSYFL+A + + L FPLGD+ K+ + Sbjct: 113 IATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167 Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 + LA +G + +SQ+ICFV++ Y D +K+ + EG + +L G+I+G H Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEIIGTH 224 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G + YTIG+R+G V EP FVV +D + +IVG +E L H + + + D Sbjct: 225 KGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKDF- 283 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + F+K R P V D+ + V+FE+ VA GQA V Y D Sbjct: 284 ------KNGEYFIKARYRSVPTKAHVSLRDEMIEVEFEEPFYAVAKGQALVVYKDDI--- 334 Query: 376 RVLGGGII 383 +LGGG+I Sbjct: 335 -LLGGGVI 341 >gi|108563707|ref|YP_628023.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori HPAG1] gi|107837480|gb|ABF85349.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori HPAG1] Length = 353 Score = 358 bits (920), Expect = 8e-97, Method: Composition-based stats. Identities = 123/369 (33%), Positives = 196/369 (53%), Gaps = 32/369 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ V +SGGVDSS A LK G++++G+ L+L+ S K + +A++ Sbjct: 11 KMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKA 62 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C+ + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG + Sbjct: 63 CEFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCE 122 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + + + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 123 KIATGHYARVKEI-----DKVSYIQEAVDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKD 177 Query: 200 VRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 ++ LA +G + +SQ+ICFV++ Y D +K+ + EG + +L G+++G Sbjct: 178 IKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEVIGT 234 Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H G + YTIG+R+G + EP FVV +D + +IVG +E L H + + + D Sbjct: 235 HKGYMQYTIGKRKGFNIKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKDF 294 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 + F+K R P FV D+ + V+FE+ GVA GQA V Y D Sbjct: 295 -------KDGEYFIKARYRSVPAKAFVSLRDEVIEVEFEEPFYGVAKGQALVVYKDDI-- 345 Query: 375 ARVLGGGII 383 +LGGG+I Sbjct: 346 --LLGGGVI 352 >gi|237749831|ref|ZP_04580311.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter bilis ATCC 43879] gi|229374581|gb|EEO24972.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter bilis ATCC 43879] Length = 347 Score = 358 bits (920), Expect = 8e-97, Method: Composition-based stats. Identities = 126/375 (33%), Positives = 193/375 (51%), Gaps = 34/375 (9%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 +++N K +V + MSGGVDSS A LL++ GY+V+G+ L+L++ + + Sbjct: 1 MEQNKK--KVALLMSGGVDSSYSAYLLQQQGYEVLGIYLKLHDKEE--------KHAVFI 50 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 + +VC+ + + + + +E F+ AV F SY GETP PC CN +KF L+ Sbjct: 51 RNCEKVCEFLGLEFKIIEAKEEFKKAVYNEFIESYKRGETPNPCALCNPLMKFGLALNAA 110 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 G + +ATGHY R + DG +R + D +DQSYFL+A +Q + L FPLG Sbjct: 111 LGYGCEYIATGHYAR---IISIDGIKR--IQEARDKSKDQSYFLYAISQDAINRLIFPLG 165 Query: 194 DMKKESVRDLAREMGLDI----ADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN 249 DM KE V+ A L I +SQ+ICFV+ Y D++K+ + + +G + Sbjct: 166 DMLKEEVKPKAFAA-LPILGDLESYKESQEICFVE-TDYIDILKKHVS-VENKGVVRDTQ 222 Query: 250 GQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREI 308 G I+G H G + YTIG+R+G V EP FV+ ++ + ++VG +E LE + Sbjct: 223 GNIVGEHKGYMQYTIGKRKGFSVKGAHEPHFVLKINPKDNEIVVGKKEELETFCVTA--- 279 Query: 309 NWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFY 368 L L + + +K K+R P + DD + ++ GVA GQA V Y Sbjct: 280 --LNKSLPNEFINGEYK--AKVRYRSTPSNATITIQDDKIIATLKEPVYGVAKGQALVIY 335 Query: 369 TSDSNEARVLGGGII 383 D VLGGG+I Sbjct: 336 KDDI----VLGGGVI 346 >gi|210135491|ref|YP_002301930.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori P12] gi|210133459|gb|ACJ08450.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methylt ransferase [Helicobacter pylori P12] Length = 362 Score = 358 bits (920), Expect = 9e-97, Method: Composition-based stats. Identities = 127/381 (33%), Positives = 202/381 (53%), Gaps = 31/381 (8%) Query: 7 TRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS 66 RL ++ ++ K M++ V +SGGVDSS A LK G++++G+ L+L+ S K Sbjct: 8 ARLRAITFNERIK-MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY-- 64 Query: 67 CCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKF 126 + +A++ C+ + + V D+++ F++AV F ++Y G+TP PC CN +KF Sbjct: 65 ------IKNAQKACEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKF 118 Query: 127 SDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 L +LG + +ATGHY R + + + +D +DQSYFL+A + + Sbjct: 119 GLALDHALKLGCEKIATGHYARVKEI-----DKISYIQEALDKTKDQSYFLYALEHEVIA 173 Query: 187 DLRFPLGDMKKESVRDLAREM--GLDIAD-KSDSQDICFVQQGKYFDVVKRINAGIALEG 243 L FPLGD+ K+ ++ LA L + +SQ+ICFV++ Y D +K+ + EG Sbjct: 174 KLVFPLGDLLKKDIKPLALNAMPFLGTLETYKESQEICFVEKS-YIDTLKKHVE-VEKEG 231 Query: 244 DIVHLNGQILGRHNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHR 302 + +L G+I+G H G + YTIG+R+G V EP FVV +D + +IVG +E L H Sbjct: 232 VVKNLQGEIIGTHKGYMQYTIGKRKGFNVKGALEPHFVVGIDAKKNELIVGKKEDLATHS 291 Query: 303 IYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASG 362 + + + + D + F+K R P FV D+ + V FE+ GVA G Sbjct: 292 LKAKNKSLMKDF-------KSGEYFIKARYRSVPAKAFVSLRDEVIEVGFEEPFYGVAKG 344 Query: 363 QACVFYTSDSNEARVLGGGII 383 QA V Y D +LGGG+I Sbjct: 345 QALVVYKDDI----LLGGGVI 361 >gi|203284580|ref|YP_002222320.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia duttonii Ly] gi|229486337|sp|B5RMM8|MNMA_BORDL RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|201084023|gb|ACH93614.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia duttonii Ly] Length = 354 Score = 358 bits (919), Expect = 9e-97, Method: Composition-based stats. Identities = 106/372 (28%), Positives = 180/372 (48%), Gaps = 26/372 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ + +SGGVDSSV + + GY I L+++ + S G C +D+ V Sbjct: 1 MKIAILLSGGVDSSVALYTMIQKGYKNIKCYYLKIWLEDELS-YIGECPWKEDITYVDSV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C NV + + + +E + N V+ G TP P + CN+ +KF + D Sbjct: 60 CKKFNVPYEIINLQEEYYNRVVTYAIEELKMGNTPSPDIFCNQRIKFGAFFEKINE-KYD 118 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ TGHY + ++ + + D +DQSYFL +++Q+ L FPLGD+ K Sbjct: 119 LIVTGHYAKI-----ENKNNSYTLKQAKDKIKDQSYFLSHLSKKQISKLHFPLGDLLKSE 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNGQILGRHNG 258 +R +A E+ L ++ DSQ ICF+ + KY + +K + +G+I+ G+ILG HNG Sbjct: 174 IRQIAHEIDLPNKNRKDSQGICFLGKIKYNEFIKYHLGEL--KGNIIEQETGKILGTHNG 231 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR---IYLREINWLGDGL 315 +TIGQR+G+ ++ G P FV D ++ + + + + + NW+ L Sbjct: 232 YWFFTIGQRKGIKLSHG-PWFVTEKDIQNNIIYISNSTNYLKQGKEQFLVHKTNWINKPL 290 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374 D KIR + + ++ D + V+ E+ + G++ GQ C+FY D Sbjct: 291 KND------NLSAKIRHGEKKIKCKIETLKDEIIRVNLEEKDYGISPGQFCIFYKED--- 341 Query: 375 ARVLGGGIISGS 386 LGG I + Sbjct: 342 -ECLGGAKILKT 352 >gi|294672865|ref|YP_003573481.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella ruminicola 23] gi|294474344|gb|ADE83733.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella ruminicola 23] Length = 359 Score = 358 bits (919), Expect = 9e-97, Method: Composition-based stats. Identities = 109/374 (29%), Positives = 161/374 (43%), Gaps = 24/374 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 K+ ++ R+ V +SGGVDSSVV R G +++ + + C + +D+ Sbjct: 4 KDIENKRIAVLLSGGVDSSVVVYEFARMGLHPDCFYIKI---GPEEEEEWDCSSEEDLEM 60 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 A V V D + + V AG TP P V CNR +KF R Sbjct: 61 ATAVSHKFGCKLEVIDCHNEYWDQVTKYTMDKVRAGLTPNPDVMCNRLIKFGAF-DEKRG 119 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 D++ATGHY D + +C D +DQ+ FL QL FP+G Sbjct: 120 HDYDLIATGHYA----MTETDENGDKWLCTSPDPVKDQTDFLAQIADWQLKKALFPIGHY 175 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILG 254 K+ VR +A L A + DSQ ICF+ + Y D ++R GD++ L G+ +G Sbjct: 176 VKDEVRVIAEREHLVNAKRKDSQGICFLGKINYNDYIRRYLGE--QPGDVIELETGKRIG 233 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWL 311 H G+ +TIGQR+G+G G P FVV D ++ + V + + ++L Sbjct: 234 EHKGLWFHTIGQRKGMGFGGG-PWFVVKKDVANNILYVSHGYDPETAYKADFPVHDFHFL 292 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTS 370 L K KIR + + P ++ + V + GVA GQ CV Y Sbjct: 293 TKEL------QPTKITFKIRHTPEYHPATLEWTSPSTCMVHSKDKIHGVAPGQFCVVYDK 346 Query: 371 DSNEARVLGGGIIS 384 D R LG G I+ Sbjct: 347 D--HHRCLGSGEIT 358 >gi|224436863|ref|ZP_03657852.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter cinaedi CCUG 18818] gi|313143341|ref|ZP_07805534.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter cinaedi CCUG 18818] gi|313128372|gb|EFR45989.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter cinaedi CCUG 18818] Length = 346 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 123/371 (33%), Positives = 191/371 (51%), Gaps = 32/371 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V + MSGGVDSS A LL GY+VIG+ L+L++ K K + + +V Sbjct: 2 KKVALLMSGGVDSSYCAHLLLSQGYEVIGLYLKLHDKEKKHKIY--------IKNCEQVA 53 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + V D E F+ V F SY AG+TP PC CN +KF L +LG D Sbjct: 54 SQLGIRFEVLDLREEFKKNVYDAFVKSYKAGQTPNPCAVCNPLMKFGLGLQKADELGCDF 113 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + + G + + + +D +DQSYFL+A Q + + FPLG KE V Sbjct: 114 IATGHYAQIKEING-----IKRIAKALDDTKDQSYFLYALPQSAIDRIIFPLGTFTKEEV 168 Query: 201 RDLAREMGLD----IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 + A ++ L + +SQ+ICFV+ Y D++K ++ + +EG + NG+ +G H Sbjct: 169 KKTALKL-LPFLGTLETYKESQEICFVEDS-YIDILK-LHEKVDMEGIVRDSNGKAVGTH 225 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G ++YTIG+R+G V EP +V ++ + +IVG +E L + I +N Sbjct: 226 KGYMHYTIGKRKGFSVFGSHEPHYVKAINPQKNEIIVGTKEELTIDSIQA--LNKSLPQA 283 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 F+ V D +K+R +P+ + + ++ +S GVA GQA V Y D Sbjct: 284 FDGGVYD-----IKVRYRSEPLKAEINIQGEYIHAKLLESAYGVAQGQALVLYQDDC--- 335 Query: 376 RVLGGGIISGS 386 VLGGG+I+ + Sbjct: 336 -VLGGGVITQA 345 >gi|195564545|ref|XP_002105876.1| GD16539 [Drosophila simulans] gi|194203240|gb|EDX16816.1| GD16539 [Drosophila simulans] Length = 389 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 101/366 (27%), Positives = 163/366 (44%), Gaps = 21/366 (5%) Query: 32 DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91 DS+V A LL G+ V+GV ++ ++ G C D+ DA C + V + Sbjct: 14 DSAVSAHLLSERGFKVLGVFMRNWDEADEV---GRCSGEADLKDAEWACRQLGVELRQVN 70 Query: 92 YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSR 150 Y + AV F Y G TP P + CNR +KF + LG D +ATGHY R+ Sbjct: 71 YVREYWTAVFSQFLDDYQLGLTPNPDILCNRHIKFDLFHKHALENLGYDAVATGHYARNS 130 Query: 151 LYVGDDG---KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREM 207 L +G + P D +DQ++FL ++ L FPLGD +K V+DLA+++ Sbjct: 131 LGNYLEGIASNNDARLLIPADTFKDQTFFLAGIPRKALQRTMFPLGDFQKSQVKDLAKKI 190 Query: 208 GLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIINYTIG 265 GL +A K +S ICFV + + D ++ + G + ++ G ++G H GI +T+G Sbjct: 191 GLQRLAKKKESTGICFVGKRNFKDFIQEYI--TSKHGPFLDIDSGAVVGHHEGIHQWTVG 248 Query: 266 QRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL-GDGLFEDAVV 321 QR L + +P FV + S+ + V +L I + NWL + Sbjct: 249 QRCRLSSFL-QPYFVARKEAASNTIYVASGHNHPALLSTHIDVDPPNWLCSKSQKILSDT 307 Query: 322 DGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 +C + + ++ V + + + V+ + + GQ VFY LG Sbjct: 308 GSLRCRFRFQHTKPLVDCQLSISPSNTFLVELDAPLRAITPGQYAVFYDD----TACLGS 363 Query: 381 GIISGS 386 I + Sbjct: 364 ARILSA 369 >gi|224010034|ref|XP_002293975.1| tRNA-methyltransferase [Thalassiosira pseudonana CCMP1335] gi|220970647|gb|EED88984.1| tRNA-methyltransferase [Thalassiosira pseudonana CCMP1335] Length = 392 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 117/395 (29%), Positives = 183/395 (46%), Gaps = 27/395 (6%) Query: 12 LDLDKNP-KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG 70 +D+ K+ + V + +SGGVDSSV LL R Y+V L+++ + S G C Sbjct: 1 MDISKDTTRKPTVAMLLSGGVDSSVAMHLLLRQNYNVTAFYLRIWLEDELSH-LGECPWE 59 Query: 71 QDVYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDL 129 D+ + VC+ VS + +R V+ G TP P + CN VKF Sbjct: 60 DDLQVCQSVCEHAGNVSLETVSLGKEYRERVVQYTIEEAQRGRTPNPDIMCNSRVKFGCF 119 Query: 130 LSVTRQLG--ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187 L + G D +A+GHY + + ++ + R D +DQSYFL A TQ+QL Sbjct: 120 LEYIEESGMDFDYVASGHYAQLKDDDDTSSISQKRLFRAPDPVKDQSYFLCALTQKQLSK 179 Query: 188 LRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH 247 + FP+G+ +K VR+LA + L ++ DSQ +CF+ + ++ D + GD+V Sbjct: 180 VIFPIGEYQKSEVRELATQFQLPNRNRPDSQGLCFLGKVRFDDFLASYLGD--RPGDVVD 237 Query: 248 -LNGQILGRHNGIINYTIGQRRGLGVAM------GEPLFVVYLDKNSSRVIVGPRES--- 297 LNG ++GRHNG+ +T+GQR+G+G M P +VV D+ V V R Sbjct: 238 ALNGDVIGRHNGLWYHTVGQRKGIGKVMFPLATAKGPWYVVAKDQERDIVYVSNRYDEDD 297 Query: 298 --LEVHRIYLREINWLGDGLF----EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-- 349 + ++ WL + + +KIR V + DDG Sbjct: 298 FAQARSEFEVEDVRWLAGEAPMNAHHEKSWHEVRLDMKIRHGPRVVQGTLMLKDDGSVGN 357 Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 + ++ + G+A GQ VFY D+ LG +IS Sbjct: 358 IRLDQKDGGLAPGQYVVFYQPDT--LECLGAAVIS 390 >gi|262037400|ref|ZP_06010864.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Leptotrichia goodfellowii F0264] gi|261748562|gb|EEY35937.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Leptotrichia goodfellowii F0264] Length = 364 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 118/380 (31%), Positives = 193/380 (50%), Gaps = 25/380 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + + +V+V MSGG+DSSV A LLK +GY+VIGVTL+ + +CC+ D+ Sbjct: 1 MTSEKDNKKVIVGMSGGIDSSVAALLLKNEGYEVIGVTLKHLPDELSENPGKTCCSLDDI 60 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 DA+ C T+ + HY + E F+ V+ F Y G+TP PC+ C+ VK L+ Sbjct: 61 SDAKMTCYTLGIPHYTINVVEEFQKEVMDYFIKMYNEGKTPSPCIICDEKVKIKKLVDFA 120 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + G +ATGHY + + ++ + +DQSY L+ + + FPL Sbjct: 121 DKTGVKYIATGHYSKKSMNN--------LLLWDENNPKDQSYMLYRLDKSVIERFLFPLS 172 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQIL 253 + +K +VR +A+E G+ K DSQ ICF G Y +K++ +G+ + NG+I+ Sbjct: 173 EYEKPTVRQIAKENGIHTHAKPDSQGICFAPDG-YISFLKKMLGDSVKKGNFIDKNGKII 231 Query: 254 GRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G H G YT+GQRRGLG+ +G P F+ + ++ +++G E L + I + + Sbjct: 232 GEHIGYQFYTVGQRRGLGLNLGRPFFISEIRPETNEIVIGDFEELLIDEIEIINYKFH-- 289 Query: 314 GLFEDAVVDGFKCFVKIRSSQ----DPVPVFVQRNDD----GVYVDFEKSEVGVASGQAC 365 +E A + G + + R S + + +++ND+ +Y FEK + GQ Sbjct: 290 --YEIADLIGKELTARPRFSSKGLKGKLLLKIEKNDELQKQRLYFKFEKKTHENSEGQHI 347 Query: 366 VFYTSDSNEARVLGGGIISG 385 VFY + ++GGG I Sbjct: 348 VFYLDN----ELIGGGEIKK 363 >gi|315920804|ref|ZP_07917044.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313694679|gb|EFS31514.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 384 Score = 357 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 109/405 (26%), Positives = 177/405 (43%), Gaps = 59/405 (14%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV++ MSGG DSSV A L GY+VIGVT + Y +++ + DAR Sbjct: 3 ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFYELNGSTEY---------LEDARN 53 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + H +D E F +I F Y AG TP+PC CN +K+ L + ++G Sbjct: 54 LAERLGIRHITYDAREIFSKQIIEYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGI 113 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY ++ + D ++DQ++FL+ Q LC + P+GD+ K Sbjct: 114 FYIATGHYAQNIQL-----NNTFYITYAADSDKDQTFFLWGLKQDILCRMLLPMGDITKV 168 Query: 199 SVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVK------------------------ 233 R A E G +A K DS +CF Y ++ Sbjct: 169 EARVWAAEHGFRKVATKKDSIGVCFCPM-DYRTFLRNWLAQNSAALAGEEQMMEEDQVLV 227 Query: 234 ----------RINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYL 283 ++ G V G + H G YTIGQRRGLG+ + P+FV + Sbjct: 228 EDCQRLTGSNQVGLNKVKRGRFVDEKGDFIAWHEGYPFYTIGQRRGLGIHLNRPVFVKEI 287 Query: 284 DKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR 343 + + V++ +LE ++L++ N + ++ + VKIR + + Sbjct: 288 NPEKNEVVLASLSALEKTEMWLKDWNLVN----QERTLGHSDIIVKIRYRKQENHATITI 343 Query: 344 NDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387 + ++V + +A GQA FY +LGGGII ++ Sbjct: 344 TPNHLLHVQLHEPLTAIAPGQAAAFYKD----GLLLGGGIIVNAR 384 >gi|260172511|ref|ZP_05758923.1| tRNA-specific 2-thiouridylase MnmA [Bacteroides sp. D2] Length = 385 Score = 357 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 109/405 (26%), Positives = 177/405 (43%), Gaps = 59/405 (14%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 ++ RV++ MSGG DSSV A L GY+VIGVT + Y +++ + DAR Sbjct: 4 ENKRVLLGMSGGTDSSVAAMRLLEAGYEVIGVTFRFYELNGSTEY---------LEDARN 54 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 + + + + H +D E F +I F Y AG TP+PC CN +K+ L + ++G Sbjct: 55 LAERLGIRHITYDAREIFSKQIIEYFVQEYLAGRTPVPCTLCNNYLKWPLLAKIADEMGI 114 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 +ATGHY ++ + D ++DQ++FL+ Q LC + P+GD+ K Sbjct: 115 FYIATGHYAQNIQL-----NNTFYITYAADSDKDQTFFLWGLKQDILCRMLLPMGDITKV 169 Query: 199 SVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVK------------------------ 233 R A E G +A K DS +CF Y ++ Sbjct: 170 EARVWAAEHGFRKVATKKDSIGVCFCPM-DYRTFLRNWLAQNSAALAGEEQMMEEDQVLV 228 Query: 234 ----------RINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYL 283 ++ G V G + H G YTIGQRRGLG+ + P+FV + Sbjct: 229 EDCQRLTGSNQVGLNKVKRGRFVDEKGDFIAWHEGYPFYTIGQRRGLGIHLNRPVFVKEI 288 Query: 284 DKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR 343 + + V++ +LE ++L++ N + ++ + VKIR + + Sbjct: 289 NPEKNEVVLASLSALEKTEMWLKDWNLVN----QERTLGHSDIIVKIRYRKQENHATITI 344 Query: 344 NDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387 + ++V + +A GQA FY +LGGGII ++ Sbjct: 345 TPNHLLHVQLHEPLTAIAPGQAAAFYKD----GLLLGGGIIVNAR 385 >gi|260947962|ref|XP_002618278.1| hypothetical protein CLUG_01737 [Clavispora lusitaniae ATCC 42720] gi|238848150|gb|EEQ37614.1| hypothetical protein CLUG_01737 [Clavispora lusitaniae ATCC 42720] Length = 407 Score = 357 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 112/390 (28%), Positives = 178/390 (45%), Gaps = 41/390 (10%) Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74 K ++ + VAMS GVDSSV AAL V G+ + ++ + + C + Sbjct: 39 AKPQQNDEIYVAMSSGVDSSVTAALYASKYPHVKGIYMANWS-------QTAKCTESEWN 91 Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT- 133 D ++VC I + ++E+ + V +P Y G TP P + CN+ +KF ++ Sbjct: 92 DVQKVCQQIGIPCERVNFEKEYWADVFMPMIEMYENGLTPNPDLGCNKYIKFGKMIEHLS 151 Query: 134 -----RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDL 188 R+ LATGHY R K + + D +DQSY+L +T + ++ Sbjct: 152 NKYSTREKKW-WLATGHYARVET-----AKTGPRLLKAYDANKDQSYYLASTPSEVFKNV 205 Query: 189 RFPLGDMKKESVRDLAREMGLDIADKSDSQDICFV--QQGKYFDVVKRINAGIALEGDIV 246 PLG K VR LA++ GL A K DSQ +CFV K+ + G+I+ Sbjct: 206 LMPLGHYTKPQVRQLAQDFGLHTASKPDSQGLCFVSPDHSKFRHFLDEFIP--PKPGNII 263 Query: 247 HLNGQILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIV---GPRESL 298 +G+I G H G+ + TIGQ+ G+ + G+P FV +++ +++ G E L Sbjct: 264 TEDGKIWGTHKGLWHATIGQKSGISMPQGDPQYQGVWFVSEKRIDTNELVIVRGGNNEKL 323 Query: 299 EVHRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVF--VQRNDDGVYVDFEKSE 356 + + + WLGDG + ++ RS Q+PVP+ + ++ + KSE Sbjct: 324 FKSILKVCDWEWLGDG---ELAATSDNLHIQFRSLQEPVPIRSLIMKDKGEIDFHLHKSE 380 Query: 357 VGVASGQACVFYTSDSNEARVLGGGI-ISG 385 +A GQ V Y RVLG G I Sbjct: 381 RAMAPGQNVVLYDG----YRVLGSGTLIET 406 >gi|260495095|ref|ZP_05815224.1| tRNA methyl transferase [Fusobacterium sp. 3_1_33] gi|260197538|gb|EEW95056.1| tRNA methyl transferase [Fusobacterium sp. 3_1_33] Length = 343 Score = 357 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 117/365 (32%), Positives = 187/365 (51%), Gaps = 24/365 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+ MSGGVDSSV A LLK GY+VIGVTL Y + +D+ D ++VC Sbjct: 2 KKVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQYLEENS----------KDIEDTKKVC 51 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + H V + + F N VI F Y +G+TP PCV C+ +KF L + + A+ Sbjct: 52 DKLGIIHEVVNIRKDFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFDIADKYKAEY 111 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + + ++ + +DQSY L+ + +L L FPL K+ + Sbjct: 112 VATGHYTSVEYS---EIFSKYLLKSVHSIIKDQSYMLYRLSPNKLERLIFPLKYYTKQEI 168 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A ++GL+I +K DSQ ICF ++G Y + +K + G+ V +G ILG H G Sbjct: 169 REIALKLGLEIYNKKDSQGICFAKEG-YKEFLKENLKDKIVRGNYVDKDGNILGEHEGYQ 227 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YT+GQRRGLG+ + +P+F+ + ++ +++G L ++ L + E Sbjct: 228 LYTMGQRRGLGINLSKPIFITEIKPQTNEIVLGEFSELFTDKVELINYKF----SVEYEK 283 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV-FYTSDSNEARVLG 379 ++ + + R S + ++ D +Y + + A GQ V FY V+G Sbjct: 284 LENLELLARPRFSSTGFYGKIIKDKDKIYFKYNEENAHNAKGQHIVFFYDG-----FVVG 338 Query: 380 GGIIS 384 GG I Sbjct: 339 GGEIK 343 >gi|311111740|ref|YP_003982962.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rothia dentocariosa ATCC 17931] gi|310943234|gb|ADP39528.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Rothia dentocariosa ATCC 17931] Length = 403 Score = 357 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 135/398 (33%), Positives = 187/398 (46%), Gaps = 42/398 (10%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+++ AMSGGVDS+V AA G++V+GV L L + + R GS CC +D DARR Sbjct: 1 MKILAAMSGGVDSAVAAARAVEAGHEVVGVHLAL-SRMPGTLRTGSRGCCTLEDSMDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC + + +V+D+ ERF+ V+ F + Y AG TP PC+ CN +KF+ LL LG Sbjct: 60 VCAQLGIPFFVWDFSERFKEDVVDDFIAEYEAGRTPNPCMRCNEKIKFAALLERAVSLGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197 D + TGHY R DDG R + R D +DQSY L T +QL FPL K Sbjct: 120 DAVVTGHYARV--ITNDDGN--RELHRAADWAKDQSYVLGVLTHEQLKHAWFPLATTPSK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR A G +A K DS DICF+ +G + G I +G ++G H Sbjct: 176 AEVRAEAERRGFSVAKKPDSYDICFIPEGDTRAWLGEHIQ--MRPGMIKDTSGNVVGEHP 233 Query: 258 GIINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G +T+GQR+GL + G+P FV+ + ++ VIVG RE L + I W G Sbjct: 234 GAQGFTVGQRKGLALGTPAPDGKPRFVLEIRPKTNEVIVGSRELLSIDEIRGIRATWAGI 293 Query: 314 GLFEDA-----------VVDGFKCFVKIRSSQDPVP--VFVQRNDDG-----------VY 349 + E + F ++R+ DPV ++ +D Sbjct: 294 PVPEAEHFLAQEPKLGVRSETFDVTAQVRAHADPVRGTAHLEWAEDTDAETPGKLRVETV 353 Query: 350 VDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSK 387 V GVA GQ V Y RVLG I+ + Sbjct: 354 VRLHDGLFGVAPGQTMVLYQG----TRVLGQSTIARAY 387 >gi|320580644|gb|EFW94866.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Pichia angusta DL-1] Length = 399 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 112/383 (29%), Positives = 181/383 (47%), Gaps = 24/383 (6%) Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75 NP D +VV+MS GVDSSV A + + +V G+ + + S + C D + Sbjct: 28 PNPNDQ-IVVSMSSGVDSSVAALMYAKQYKNVKGIFMANW-SPDSRGGVSKCTVESDWEE 85 Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR- 134 + +CD I + ++E+ + + V P Y G TP P V CN+ VKF ++ Sbjct: 86 VQTICDQIGIPCERVNFEKEYWSDVFEPMLEMYRKGLTPNPDVGCNKYVKFGKMIEHLST 145 Query: 135 --QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPL 192 L TGHY R + + R L +DQSY+L + L + P+ Sbjct: 146 KFSRDNWWLVTGHYARIMKHRA---TGESHLLRAGFLPKDQSYYLSQMPESVLSKILMPI 202 Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICFVQ-QGKYFDVVKRINAGIALEGDIVHLNGQ 251 G K VR+LA+ GL DK DSQ +CFV G + D + GDIV +G+ Sbjct: 203 GHYTKPEVRELAQRYGLVSKDKRDSQGLCFVSQHGNFKDFLDEFLP--PNPGDIVTADGR 260 Query: 252 ILGRHNGIINYTIGQRRGLGVAMGEP-----LFVVYLDKNSSRVIVG---PRESLEVHRI 303 + GRHNG+ + TIGQR G+ + G+P ++ + + +++I+ R + E R+ Sbjct: 261 VWGRHNGLWHGTIGQRSGISLPQGDPEMKGVWYISGKNYDKNQLIISKKTDRAAFEKDRL 320 Query: 304 YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQ 363 + + W+ L + +D + +++RS + P + + ++ GVA GQ Sbjct: 321 KVADWQWINSSL-DFGDLDPAELTIQVRSLESPRALRAVVAGNEPEFLLQEKIDGVAPGQ 379 Query: 364 ACVFYTSDSNEARVLGGGIISGS 386 V Y ++ RVLGGGII+ + Sbjct: 380 NLVLYKNE----RVLGGGIIAEA 398 >gi|195347526|ref|XP_002040303.1| GM19108 [Drosophila sechellia] gi|194121731|gb|EDW43774.1| GM19108 [Drosophila sechellia] Length = 389 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 100/366 (27%), Positives = 162/366 (44%), Gaps = 21/366 (5%) Query: 32 DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91 DS+V A LL G+ V+GV ++ ++ G C D+ DA C + V + Sbjct: 14 DSAVSAHLLAERGFKVLGVFMRNWDEADEV---GRCSGEADLKDAEWACRQLGVELRQVN 70 Query: 92 YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADVLATGHYIRSR 150 Y + AV F Y G TP P + CNR +KF + LG D +ATGHY R+ Sbjct: 71 YVREYWTAVFSQFLDDYQLGLTPNPDILCNRHIKFDLFHKHALKNLGYDAVATGHYARNS 130 Query: 151 LYVGDDG---KRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREM 207 L +G + P D +DQ++FL ++ L FPLGD +K V+DLA+++ Sbjct: 131 LGNYLEGIASNNDARLLIPADTFKDQTFFLAGIPRKALQRTMFPLGDFQKSQVKDLAKKI 190 Query: 208 GLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNGIINYTIG 265 GL +A K +S ICFV + + D ++ + G + ++ G ++G H GI +T+G Sbjct: 191 GLQRLAKKKESTGICFVGKRNFKDFIQEYI--TSKHGPFLDIDSGAVVGHHEGIHQWTVG 248 Query: 266 QRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL-GDGLFEDAVV 321 QR L + +P FV + S+ + V +L I + NWL + Sbjct: 249 QRCRLSSFL-QPYFVARKEAASNTIYVASGHNHPALFSTHIDVDPPNWLCSKAQKILSDT 307 Query: 322 DGFKCFVKIRSSQDPVPVFVQRND-DGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGG 380 +C + + ++ V + + + V+ + + GQ FY LG Sbjct: 308 GSLRCRFRFQHTKPLVDCQLSISPSNTFLVELDAPLRAITPGQYAAFYDD----TACLGS 363 Query: 381 GIISGS 386 I + Sbjct: 364 ARILSA 369 >gi|261840049|gb|ACX99814.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori 52] Length = 342 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 124/368 (33%), Positives = 195/368 (52%), Gaps = 32/368 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ V +SGGVDSS A LK G++++G+ L+L+ S K + +A++ C Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG + Sbjct: 53 EFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + + +D +DQSYFL+A + + L FPLGD+ K+ + Sbjct: 113 IATGHYARIKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167 Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 + LA +G + +SQ+ICFV++ Y D +K+ + EG + +L G+I+G H Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEIIGTH 224 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G + YTIG+R+G V EP FVV +D + +IVG +E L H + + + D Sbjct: 225 KGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKDF- 283 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + F+K R P V D+ + V+FE+ GVA GQA V Y D Sbjct: 284 ------KNGEYFIKARYRSVPTKAHVNLRDEVIEVEFEEPFYGVAKGQALVVYKDDI--- 334 Query: 376 RVLGGGII 383 +LGGG+I Sbjct: 335 -LLGGGVI 341 >gi|308185086|ref|YP_003929219.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori SJM180] gi|308061006|gb|ADO02902.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori SJM180] Length = 342 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 122/367 (33%), Positives = 194/367 (52%), Gaps = 30/367 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ V +SGGVDSS A LK G++++G+ L+L+ S K + +A++ C Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG + Sbjct: 53 EFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + + +D +DQSYFL+A + + L FPLGD+ K+ + Sbjct: 113 IATGHYARVKEI-----DKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167 Query: 201 RDLAREM--GLDIAD-KSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + LA L + +SQ+ICFV++ Y D +K+ + EG + +L G+I+G H Sbjct: 168 KPLALNAMPFLGTLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEIIGTHK 225 Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G + YTIG+R+G + EP FVV +D + +IVG +E L H + + + + D Sbjct: 226 GYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAQNKSLMKDF-- 283 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + +K R P FV D + V+F++ GVA GQA V Y D Sbjct: 284 -----KKGEYSIKARYRSVPAKAFVSLKDGMIEVEFKEPFYGVAKGQALVVYQDDI---- 334 Query: 377 VLGGGII 383 +LGGG+I Sbjct: 335 LLGGGVI 341 >gi|307700537|ref|ZP_07637571.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mobiluncus mulieris FB024-16] gi|307614258|gb|EFN93493.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Mobiluncus mulieris FB024-16] Length = 394 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 135/404 (33%), Positives = 198/404 (49%), Gaps = 44/404 (10%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +V++ +SGGVDS+V AA L GYDV ++L S + + Q + DAR+V Sbjct: 3 KKVIIGLSGGVDSAVAAARLLEQGYDVHAFFMKLEESGRDEENN---PTAQALADARKVA 59 Query: 81 DTINVS---HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + + +V++ +RF VI PF +YA+G TP PCV CNR KF ++ + G Sbjct: 60 AYLGIPPEKFHVWELVDRFERGVITPFVEAYASGLTPNPCVRCNRVFKFGYVVERALREG 119 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK- 196 D +ATGHY D + R LE+DQSY L + L FPL D++ Sbjct: 120 FDYVATGHYA-----CLDHIGDGFRLRRGASLEKDQSYVLAGARAEMLAHAIFPLFDVRD 174 Query: 197 KESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 K R A+ GL +A K DS DICF+ G ++ G A G IV NG ++G+H Sbjct: 175 KAETRAEAQRRGLPVAHKRDSFDICFIHDGDTRGFLRGKLGG-AQPGAIVDENGAVVGQH 233 Query: 257 NGIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLG 312 G YT+GQRRGL + G+P +V +D + + V VGP E+L+VH+I INWL Sbjct: 234 LGAFLYTVGQRRGLHLPRPHEDGQPRYVTGVDVSHNVVTVGPLETLDVHQIRCGRINWLV 293 Query: 313 DGLF------------EDAVVDGFK----CFVKIRSSQDPVPVFVQRND-DGVYVDFEK- 354 + F +A + + V+ R+ P P + +D D + V F + Sbjct: 294 EPGFGRQLLTVSGQESREAPHETKETETPLTVQFRAHSHPEPATFEIDDQDRLTVIFPET 353 Query: 355 -SEVGVASGQACVFYTSDSNEARVLGGGIISGSK----RSDAVE 393 + GVA GQ+ V Y + V+ I+G++ R D E Sbjct: 354 ATIRGVAPGQSLVIYHGN----WVIAQAGITGTQSANPRQDTTE 393 >gi|315607764|ref|ZP_07882757.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella buccae ATCC 33574] gi|315250233|gb|EFU30229.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella buccae ATCC 33574] Length = 359 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 111/371 (29%), Positives = 163/371 (43%), Gaps = 25/371 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD R+ V +SGGVDSSVV L G +++ + + C + +D+ A Sbjct: 8 KDKRIAVLLSGGVDSSVVVCELAALGLHPDCFYIKI---GPEEQEEWDCSSEEDLEMATA 64 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V V D + + V AG TP P V CNR +KF Sbjct: 65 VAARYGCRLQVVDCHREYWDEVTRYTMEKVKAGFTPNPDVMCNRLIKFGAF-DAKMGHDY 123 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ATGHY ++ G R+ + D +DQ+ FL QL FP+G K+ Sbjct: 124 DLIATGHYAQTEWIDG-----RKWLVTSPDPVKDQTDFLAQIYDWQLRKAIFPIGHYMKD 178 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR++A L A + DSQ ICF+ Q Y + ++R GD++ L G+ +G H Sbjct: 179 EVREIAGREHLVNAKRRDSQGICFLGQINYNEYLRRYLGE--QPGDVIELETGKTIGEHR 236 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314 G+ +TIGQR+GLG G P FVV D + + V + + + Sbjct: 237 GLWFHTIGQRKGLGFGGG-PWFVVKKDVGRNVLYVSHGYDPQTAYKQDFRMHDFH----- 290 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSN 373 +D + KIR + D +P V++ +G+Y V + GVA GQ CV Y D Sbjct: 291 -VLTTPIDSERVTFKIRHTPDYLPATVEKTSEGIYTVHADAPIHGVAPGQFCVVY--DEQ 347 Query: 374 EARVLGGGIIS 384 R G G I+ Sbjct: 348 HHRCFGSGEIT 358 >gi|325189345|emb|CCA23865.1| tRNAspecific 2thiouridylase mnmA putative [Albugo laibachii Nc14] gi|325189563|emb|CCA24050.1| tRNAspecific 2thiouridylase mnmA putative [Albugo laibachii Nc14] Length = 439 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 100/395 (25%), Positives = 162/395 (41%), Gaps = 39/395 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 K++ VV+ MSGGVDSSV A LLK+ G+ V GV ++ ++S + C QD+ D + Sbjct: 26 KNLHVVIGMSGGVDSSVAALLLKQQGHKVTGVYMKNWDSSDEVGAQC-CPQDQDLKDVQS 84 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 VC +++ + ++ + N V P + AG TP P + CNR +KF + + L A Sbjct: 85 VCKQLDIPIHTTNFVSSYWNTVFAPCLEGFEAGLTPNPDILCNREIKFKEFIRFADTLHA 144 Query: 139 DVLATGHYIRSRLYVGD-DGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 DV+ATGHY + + + +D +DQ+YFL + FPLG +K Sbjct: 145 DVVATGHYALLKKAKSNGQSNEYHQLYAGLDPLKDQTYFLSQVPGSSFSKVLFPLGSYRK 204 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQI-LGRH 256 VR++A+ L A K DS +CF+ + ++ + + G ++ + L H Sbjct: 205 AEVREIAKSHHLHTALKRDSVGLCFIGKRQFGPFINQYI--TPKYGFYYDVDRLVRLKAH 262 Query: 257 NGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVG---PRESLEVHRIY--LREINWL 311 G + T+GQR L M F+ K + V +L + + NW+ Sbjct: 263 KGFASCTVGQRASL-DGMDAKYFIAGKRKVDGTIFVARGTRHPALFSNYCFLSANNFNWI 321 Query: 312 GDGLF---EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG--------------------- 347 ++ C + R Q P V + Sbjct: 322 AGEPPLMKDNEASFSLACQYRARYRQQPGRCVVSLVSEAEAVFESSSFLEIPTGTKQSRQ 381 Query: 348 -VYVDFEKSEVGVASGQACVFYTSDSNEARVLGGG 381 + +D E + + GQ Y D GGG Sbjct: 382 FLRIDLEFPQRAITPGQTLALYGDD---GLCYGGG 413 >gi|205822484|sp|Q1CRS3|MNMA_HELPH RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 342 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 123/368 (33%), Positives = 196/368 (53%), Gaps = 32/368 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ V +SGGVDSS A LK G++++G+ L+L+ S K + +A++ C Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG + Sbjct: 53 EFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + + +D +DQSYFL+A + + L FPLGD+ K+ + Sbjct: 113 IATGHYARVKEI-----DKVSYIQEAVDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167 Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 + LA +G + +SQ+ICFV++ Y D +K+ + EG + +L G+++G H Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEVIGTH 224 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G + YTIG+R+G + EP FVV +D + +IVG +E L H + + + D Sbjct: 225 KGYMQYTIGKRKGFNIKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKDF- 283 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + F+K R P FV D+ + V+FE+ GVA GQA V Y D Sbjct: 284 ------KDGEYFIKARYRSVPAKAFVSLRDEVIEVEFEEPFYGVAKGQALVVYKDDI--- 334 Query: 376 RVLGGGII 383 +LGGG+I Sbjct: 335 -LLGGGVI 341 >gi|119953460|ref|YP_945669.1| tRNA-specific 2-thiouridylase MnmA [Borrelia turicatae 91E135] gi|254811445|sp|A1R0A7|MNMA_BORT9 RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|119862231|gb|AAX17999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia turicatae 91E135] Length = 354 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 104/372 (27%), Positives = 182/372 (48%), Gaps = 26/372 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ V +SGGVDSSV ++ + GY I L+++ + S G C +D+ V Sbjct: 1 MQIAVLLSGGVDSSVALYIMIQKGYKNIKCYYLKIWLEDELS-YIGECPWKEDINYVEAV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C NV + + ++ + V+ G TP P + CN+ +KF + D Sbjct: 60 CKKFNVPYEIISLQDEYYKRVVTYAIEELKIGNTPSPDIFCNQRIKFGAFFDKINEH-YD 118 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ TGHY + ++ I+ + D +DQSYFL +++Q+ L FPLGD+ K Sbjct: 119 LIVTGHYAKI-----ENKNDHYILKQAKDKIKDQSYFLSHLSRKQISKLHFPLGDLLKTE 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNGQILGRHNG 258 +R +A+++ L ++ DSQ ICF+ + KY + +K + +G+I+ G+ILG HNG Sbjct: 174 IRQIAQKIDLPNKNRKDSQGICFLGKIKYDEFIKYHLGEL--KGNIIEQETGKILGTHNG 231 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR---IYLREINWLGDGL 315 +TIGQR+G+ ++ G P FV D ++ + + + + + NW+ Sbjct: 232 YWFFTIGQRKGIKLSHG-PWFVTEKDIQNNIIYISNSINYLKQGKQQFLVHKTNWIN--- 287 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 ++ KIR + + ++ +D + VD E+ + G++ GQ C+FY D Sbjct: 288 ---KPLNNGDLSAKIRHGEKKIKCKIEMLKNDIIKVDLEEKDYGISPGQFCIFYQED--- 341 Query: 375 ARVLGGGIISGS 386 LGG I + Sbjct: 342 -ECLGGAKILKT 352 >gi|317014725|gb|ADU82161.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori Gambia94/24] Length = 342 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 125/368 (33%), Positives = 197/368 (53%), Gaps = 32/368 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ V +SGGVDSS A LK G++++G+ L+L+ S K + +A++ C Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + V D+++ F++AV F S+Y G+TP PC CN +KF L QLG + Sbjct: 53 EFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALQLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + R + +D +DQSYFL+A + + L FPLGD+ K+ + Sbjct: 113 IATGHYARVKEI-----DRVSYIQEAVDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167 Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 + LA +G + +SQ+ICFV++ Y D +K+ + EG + +L G+I+G H Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEIIGTH 224 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G + YTIG+R+G + EP FVV +D + +IVG +E L H + + + + D Sbjct: 225 KGYMQYTIGKRKGFNIKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLMKDF- 283 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + F+K R P FV D+ + V+F++ GVA GQA V Y D Sbjct: 284 ------KKGEYFIKARYRSVPAKAFVSLKDEVIEVEFKEPFYGVAKGQALVVYKDDI--- 334 Query: 376 RVLGGGII 383 +LGGG+I Sbjct: 335 -LLGGGVI 341 >gi|317013122|gb|ADU83730.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori Lithuania75] Length = 342 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 124/368 (33%), Positives = 196/368 (53%), Gaps = 32/368 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ V +SGGVDSS A LK G++++G+ L+L+ S K + +A++ C Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + V D+++ F++AV F ++Y G+TP PC CN +KF L +LG + Sbjct: 53 EFLGIPLEVLDFQKDFKSAVYDEFINAYEEGKTPNPCALCNPLMKFGLALDHALKLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + + +D +DQSYFL+A + + L FPLGD+ K+ + Sbjct: 113 IATGHYARVKEI-----DKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167 Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 + LA +G + +SQ+ICFV++ Y D +K+ + EG + +L G+I+G H Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEIIGTH 224 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G + YTIG+R+G V EP FVV +D + +IVG +E L H + + + + D Sbjct: 225 KGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLMKDF- 283 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + F+K R P FV D + V+FE+ GVA GQA V Y D Sbjct: 284 ------KDGEYFIKARYRSVPAKAFVSLKDGMIEVEFEEPFYGVAKGQALVVYKDDI--- 334 Query: 376 RVLGGGII 383 +LGGG+I Sbjct: 335 -LLGGGVI 341 >gi|254779876|ref|YP_003057982.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori B38] gi|254001788|emb|CAX30019.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori B38] Length = 342 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 122/368 (33%), Positives = 196/368 (53%), Gaps = 32/368 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ V +SGGVDSS A LK G++++G+ L+L+ S K + +A++ C Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + V D+++ F++AV F ++Y G+TP PC CN +KF L QLG + Sbjct: 53 EFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALQLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + + +D +DQSYFL+A + + L FPLGD+ K+ + Sbjct: 113 IATGHYARVKEI-----DKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167 Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 + LA +G + +SQ+ICFV++ Y D +K+ + EG + +L G+I+G H Sbjct: 168 KPLALSAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEIIGTH 224 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G + YTIG+R+G + EP FVV +D + +IVG +E L H + + + + D Sbjct: 225 KGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLMKDF- 283 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + F+K R P V D+ + V+F++ GVA GQA V Y D Sbjct: 284 ------KDGEYFIKARYRSVPAKAHVSLRDEVIEVEFKEPFYGVAKGQALVVYQDDI--- 334 Query: 376 RVLGGGII 383 +LGGG+I Sbjct: 335 -LLGGGVI 341 >gi|203288114|ref|YP_002223129.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia recurrentis A1] gi|229486333|sp|B5RQ24|MNMA_BORRA RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|201085334|gb|ACH94908.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Borrelia recurrentis A1] Length = 354 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 104/372 (27%), Positives = 179/372 (48%), Gaps = 26/372 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVI-GVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ + +SGGVDSSV + + GY I L+++ + S G C +D+ V Sbjct: 1 MKIAILLSGGVDSSVALYTMIQKGYKNIKCYYLKIWLEDELS-YIGECPWKEDITYVDSV 59 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C NV + + + +E + N V+ G TP P + CN+ +KF + D Sbjct: 60 CKKFNVPYKIINLQEEYYNRVVTYAIEELKMGNTPSPDIFCNQRIKFGAFFEKINE-KYD 118 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 ++ TGHY + ++ + + D +DQSYFL +++Q+ L FPLGD+ K Sbjct: 119 LIVTGHYAKI-----ENKNNSYTLKQAKDKIKDQSYFLSHLSKKQISKLHFPLGDLLKSE 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIV-HLNGQILGRHNG 258 +R +A E+ L ++ DSQ ICF+ + KY + +K + +G+I+ G+ILG HNG Sbjct: 174 IRQIAHEIDLPNKNRKDSQGICFLGKIKYNEFIKYHLGEL--KGNIIEQETGKILGTHNG 231 Query: 259 IINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHR---IYLREINWLGDGL 315 +TIGQR+G+ ++ G P FV D ++ + + + + + NW+ Sbjct: 232 YWFFTIGQRKGIKLSHG-PWFVTEKDIQNNIIYISNSTNYLKQGKEQFLVHKTNWIN--- 287 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNE 374 + KIR + + ++ D + V+ E+ + G++ GQ C+FY D Sbjct: 288 ---KPLKNNNLSAKIRHGEKKIKCKIETLKDEIIRVNLEEKDYGISPGQFCIFYKED--- 341 Query: 375 ARVLGGGIISGS 386 LGG I + Sbjct: 342 -ECLGGAKILKT 352 >gi|256028712|ref|ZP_05442546.1| tRNA (5-methylaminomethyl-2-thiouridylate) -methyltransferase [Fusobacterium sp. D11] gi|289766621|ref|ZP_06525999.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. D11] gi|289718176|gb|EFD82188.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. D11] Length = 344 Score = 357 bits (916), Expect = 3e-96, Method: Composition-based stats. Identities = 117/365 (32%), Positives = 191/365 (52%), Gaps = 23/365 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+ MSGGVDSSV A LLK GY+VIGVTL + + +D+ DA++VC Sbjct: 2 KKVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENS----------KDIEDAKKVC 51 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + H V + + F N VI F Y +G+TP PCV C+ +KF L + + A+ Sbjct: 52 NKLEIIHEVVNIRKDFENIVIKYFLDGYKSGKTPSPCVICDDEIKFKILFDIADKYKAEY 111 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + + + + ++ + +DQSY L+ + +L L FPL K+ + Sbjct: 112 VATGHY--TSVEYSEIFSKYLLLKSVHSIIKDQSYMLYRLSPNKLERLIFPLKYYTKQEI 169 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A ++GL+I +K DSQ ICF ++G Y + +K + G+ V +G ILG H G Sbjct: 170 REIALKLGLEIYNKKDSQGICFAKEG-YKEFLKENLKDEIVRGNYVDKDGNILGEHEGYQ 228 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQRRGLG+ + +P+F+ + ++ +++G L +++ L + E Sbjct: 229 LYTIGQRRGLGINLSKPIFITEIKPQTNEIVLGEFSELFTNKVELINYKF----SVEYEK 284 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV-FYTSDSNEARVLG 379 ++ + + R S + +N + +Y + + A GQ V FY V+G Sbjct: 285 LENLELLARPRFSSTGFFGKLMKNKNKIYFKYNEENAHNAKGQHIVFFYDG-----FVVG 339 Query: 380 GGIIS 384 GG I Sbjct: 340 GGEIK 344 >gi|237741407|ref|ZP_04571888.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 4_1_13] gi|229430939|gb|EEO41151.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 4_1_13] Length = 343 Score = 356 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 115/365 (31%), Positives = 187/365 (51%), Gaps = 24/365 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+ MSGGVDSSV A LLK GY+VIGVTL + + +D+ DA++VC Sbjct: 2 KKVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENS----------KDIEDAKKVC 51 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + H V + + F N VI F Y G TP PC+ C+ +KF L + + A+ Sbjct: 52 DKLGIIHKVVNIRKDFENIVIKYFLDGYKTGITPSPCIICDDEIKFKILFDIADKYKAEY 111 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + ++ + +DQSY L+ + +L L FPL D K+ + Sbjct: 112 VATGHYTSVEYSK---IFSKYLLKSVHSIIKDQSYMLYRLSSNKLERLIFPLKDYSKQEI 168 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A ++GL+I +K DSQ +CF ++G Y + +K ++G+ + +G ILG+H G Sbjct: 169 REIALKIGLEIHNKKDSQGVCFAKEG-YKEFLKENLKDEIVKGNYIDKDGNILGQHEGYQ 227 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQRRGLG+ + +P+F+ + ++ +++G L ++ L E Sbjct: 228 LYTIGQRRGLGINLSKPIFITEIKPQTNEIVLGEFSELFTDKVELIN----SKFSVEYEK 283 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV-FYTSDSNEARVLG 379 ++ + + R S + ++ + +Y + + A GQ V FY V+G Sbjct: 284 LENLELLARPRFSSTGFYGKLIKDKNKIYFKYNEENAHNAKGQHIVFFYDG-----FVVG 338 Query: 380 GGIIS 384 GG I Sbjct: 339 GGEIK 343 >gi|315604614|ref|ZP_07879677.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] gi|315313626|gb|EFU61680.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinomyces sp. oral taxon 180 str. F0310] Length = 363 Score = 356 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 141/377 (37%), Positives = 196/377 (51%), Gaps = 23/377 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRV 79 MRV+ A+SGGVDS+V AA G+DV+GV + L + + + CC+ +D DA R Sbjct: 1 MRVLAALSGGVDSAVAAAKAVEAGHDVVGVHMALSSQPQECRIGSRGCCSIEDAGDAARA 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 I + YV+D + F VI F + Y AG TP PCV CN VKF +L S R LG D Sbjct: 61 AQIIGIPFYVWDLAQEFEQTVITDFVAQYKAGRTPNPCVRCNEFVKFRELASRARALGFD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KE 198 + TGHY DG + R D +DQSY L ++L + PLG K Sbjct: 121 AVCTGHYAAIV-----DGPSGPELHRGADALKDQSYVLAVMGPEELARVVLPLGQAPSKA 175 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR A +GL +++K DS DICF+ G ++ A EG+IV +G++LGRH G Sbjct: 176 WVRSEAERLGLGVSNKPDSYDICFIPDGDTQGFLRAHLG--ASEGEIVTPDGEVLGRHEG 233 Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 NYT+GQR+GLG+ G P +V+ +++V+VGP E L + RI+ WL Sbjct: 234 YWNYTVGQRKGLGIGAPAPDGRPRYVLETRPETNQVVVGPSELLSISRIHATNAVWLASD 293 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD---GVYVDFEKSEVGVASGQACVFYTSD 371 DA + FV++R+ P+PV D+ + V E GVA GQ+ V Y Sbjct: 294 ---DAGNEPADLFVQLRAHGAPIPVAELVRDEASATIDVVLEDGARGVARGQSMVIYRG- 349 Query: 372 SNEARVLGGGIISGSKR 388 +RVLG G I ++R Sbjct: 350 ---SRVLGEGTIGRTER 363 >gi|205822461|sp|A6W7K7|MNMA_KINRD RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 365 Score = 356 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 145/377 (38%), Positives = 190/377 (50%), Gaps = 27/377 (7%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G++V+GV + L N + R GS CC +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVDAGHEVVGVHMAL-NRSPGTLRTGSRGCCTIEDALDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D E F V+ F + YAAG TP PCV CN +KF+ LL LG Sbjct: 60 AADLLGIPFYVWDLSEDFVEDVVADFVAEYAAGRTPNPCVRCNERIKFAALLDKGIALGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KK 197 D +ATGHY R G DG R + R D +DQSY L Q+ FPLGD K Sbjct: 120 DAVATGHYARV--VTGPDG--RAELHRAADAAKDQSYVLAVLDADQVAHAMFPLGDAPTK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR A GL +A K DS DICF+ G + + G++V +G++LG H Sbjct: 176 AEVRAEAERRGLPVASKPDSHDICFIPDGDTRGFLADKLGEV--PGEVVDESGEVLGTHT 233 Query: 258 GIINYTIGQRRGLGV----AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G YT+GQR+GLG+ A G P +V+ ++ V VGP E L V + E W Sbjct: 234 GTYGYTVGQRKGLGISRPAADGRPRYVLSIEPVRRTVTVGPAERLSVGALEAVEAVW--- 290 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQR----NDDGVYVDFEKSEVGVASGQACVFYT 369 DA V + V++R+ +PVP + +D + V GVA GQ Y Sbjct: 291 --NADAPVGPVEVHVQVRAHGEPVPAVAELTGPADDPVLRVRLRTPLSGVAPGQTVAVYR 348 Query: 370 SDSNEARVLGGGIISGS 386 RVLG ISG+ Sbjct: 349 G----TRVLGSATISGT 361 >gi|269119363|ref|YP_003307540.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Sebaldella termitidis ATCC 33386] gi|268613241|gb|ACZ07609.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Sebaldella termitidis ATCC 33386] Length = 353 Score = 356 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 119/365 (32%), Positives = 182/365 (49%), Gaps = 17/365 (4%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 +V+V MSGGVDSS A LK+ GY+VIG+TL+ + +CC+ D+ DA+ V Sbjct: 2 KTKVIVGMSGGVDSSAAALFLKKQGYEVIGITLKHLPDELSENGGKTCCSIDDITDAKNV 61 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C + + HY D E F+ V+ F Y G+TP PCV C+ +K L + ++GA+ Sbjct: 62 CSHLEIPHYTIDVSEEFKKEVMDYFIKMYNEGKTPSPCVICDEKIKIKKLAEIADKMGAE 121 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY L + + +DQ+Y L+ L + FPL K+ Sbjct: 122 YIATGHYSGKTLENK--------LIWDRENTKDQTYMLYRLDTGILSRMLFPLSGYNKKE 173 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 +R++ +E G+ I K DSQ ICF +G Y D +K + EG NG +LG+H G Sbjct: 174 IREIVKEAGIRIHSKPDSQGICFAPKG-YEDFLKGSKEIVIKEGLFKDKNGNVLGKHKGY 232 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDA 319 +T+GQRRGLG+ +G+ F+ + + +I+G + L + + IN+ + E+ Sbjct: 233 QLFTVGQRRGLGINLGKMYFITDIIPEENLIILGEFQDLMKKSVKV--INYKFNTELEN- 289 Query: 320 VVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 G K + R S + + D VY F+ A GQ VFY D ++G Sbjct: 290 -TAGKKITARPRFSSKGLTGEIITKDKEVYFVFDNENAENAEGQHIVFYLDDV----LIG 344 Query: 380 GGIIS 384 GG I+ Sbjct: 345 GGEIA 349 >gi|302337414|ref|YP_003802620.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Spirochaeta smaragdinae DSM 11293] gi|301634599|gb|ADK80026.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Spirochaeta smaragdinae DSM 11293] Length = 360 Score = 356 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 124/383 (32%), Positives = 187/383 (48%), Gaps = 39/383 (10%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 N + VV+A+SGGVDSSV A +L R + G T + + CC + +Y A Sbjct: 3 NTHNDAVVIALSGGVDSSVAAWMLSRQSGRIFGATHYIQDDSP-------CCNTKTIYRA 55 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS----- 131 R +C + + + + D FR +V+ PF +Y ETP PCV CN ++F D Sbjct: 56 RVICRDLGIPYRLLDMRSSFRQSVVDPFVETYRRAETPNPCVRCNERLRFGDFYHQVRRL 115 Query: 132 -----VTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLC 186 R+ +ATGHY R+ + G + + +D +DQSY L+ + L Sbjct: 116 LVEEGALRETERPRIATGHYARTAVVDG-----VSYIRKGVDPSKDQSYMLYRIPRDVLP 170 Query: 187 DLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRIN--AGIALEGD 244 + FPLG+ K+ V ++A L +SQDICF G Y D ++ + GD Sbjct: 171 YVCFPLGEYTKKEVVEIALRENLPTKSIKESQDICFA-DGGYIDFLRHRLGTEFVDRPGD 229 Query: 245 IVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIY 304 +V +G+ LG+H G ++YTIGQR+GLG+ G P +V +D +++RV+V + R Sbjct: 230 LVDNSGKRLGQHRGYLHYTIGQRQGLGLGDG-PWYVSQIDGDANRVVVARKGEFGTQRFS 288 Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQ--RNDDGVYVDFEKSEVGVASG 362 L E+ W + F+C VKIR + VP V+ + V+ E+ V G Sbjct: 289 LSEVIW------DLPDAPPFECMVKIRYNSGEVPCRVEGLPESGSLLVELEEPA-SVTPG 341 Query: 363 QACVFYTSDSNEARVLGGGIISG 385 Q+ VFY D V+GGGII Sbjct: 342 QSAVFYRDD----LVIGGGIIDR 360 >gi|323359738|ref|YP_004226134.1| tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Microbacterium testaceum StLB037] gi|323276109|dbj|BAJ76254.1| predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase [Microbacterium testaceum StLB037] Length = 365 Score = 356 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 147/380 (38%), Positives = 196/380 (51%), Gaps = 23/380 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 MRV+ AMSGGVDS+V AA G+DV+GV L L + + R GS CC +D DARR Sbjct: 1 MRVLAAMSGGVDSAVAAARAVDAGHDVVGVHLALSRAG-GTLRAGSRGCCTIEDAMDARR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 D + + YV+D+ ERFR+ VI F S Y AG TP PC+ CN +KF+ LL +LG Sbjct: 60 AADKLGMPFYVWDFSERFRDDVIDDFVSEYRAGRTPNPCMRCNEKIKFAALLERALELGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197 D + TGHY D R + R D +DQSY L T +QL FPLG K Sbjct: 120 DAVCTGHYATLV-----DTPEGRELHRASDNAKDQSYVLGVLTAEQLAHTYFPLGATPSK 174 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 VR A E GL +A K DS DICF+ G + + A +G+I+ +G ++G H Sbjct: 175 ALVRAEAEERGLTVAQKPDSHDICFIPDGDTRGWLA--DKVGAEKGEILDRSGAVVGTHE 232 Query: 258 GIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G +T+GQRRGL + G+P FV+ + ++ V+VGP+E+L I W G Sbjct: 233 GAHAFTVGQRRGLQLGVPAPDGKPRFVLEVRPVNNTVVVGPKEALACAEIAGERFTWAGR 292 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 F C V+IR+ DPVP F + D + V + GVA GQ V Y Sbjct: 293 A----PSSTSFACDVQIRAHADPVPAFAELEDGVLTVRPDAPFDGVAPGQTAVLYDG--- 345 Query: 374 EARVLGGGIISGSKRSDAVE 393 RV+G I + + VE Sbjct: 346 -TRVIGQFTIDRTVSAVPVE 364 >gi|256846579|ref|ZP_05552036.1| tRNA methyl transferase [Fusobacterium sp. 3_1_36A2] gi|294784166|ref|ZP_06749467.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 3_1_27] gi|256718348|gb|EEU31904.1| tRNA methyl transferase [Fusobacterium sp. 3_1_36A2] gi|294488236|gb|EFG35581.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Fusobacterium sp. 3_1_27] Length = 343 Score = 356 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 115/365 (31%), Positives = 189/365 (51%), Gaps = 24/365 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 +VV+ MSGGVDSSV A LLK GY+VIGVTL + + +D+ DA++VC Sbjct: 2 KKVVIGMSGGVDSSVSAYLLKEQGYEVIGVTLNQHLEENS----------KDIEDAKKVC 51 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + +SH V + + F N VI F Y++G TP PCV C+ +KF L + + A+ Sbjct: 52 NKLGISHEVINIRKDFENIVIKYFLDGYSSGITPSPCVICDDEIKFKILFDIADKYKAEY 111 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY + + ++ + +DQSY L+ + +L L FPL K + Sbjct: 112 VATGHYTSVEYS---EIFSKYLLKSVHSIIKDQSYMLYRISPDKLERLIFPLKPYTKHEI 168 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGII 260 R++A ++GL++ DK DSQ +CF ++G Y + +K ++G+ + +G ILG+H G Sbjct: 169 REIALKIGLEVYDKKDSQGVCFAKEG-YKEFLKENLKDEIVKGNYIDKDGNILGQHEGYQ 227 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQRRGLG+ + +P+F+ + ++ +++G L + L + E Sbjct: 228 LYTIGQRRGLGINLSKPIFITEIKPQTNEIVLGEFSELFTDIVELINYKF----SVEYEK 283 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACV-FYTSDSNEARVLG 379 ++ + + R S + ++ + +Y + + A GQ V FY V+G Sbjct: 284 LENLELLARPRFSSTGFYGKLIKDKNKIYFKYNEENAHNAKGQHIVFFYDG-----FVVG 338 Query: 380 GGIIS 384 GG I Sbjct: 339 GGEIK 343 >gi|323507819|emb|CBQ67690.1| related to trna methyltransferase [Sporisorium reilianum] Length = 479 Score = 356 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 109/404 (26%), Positives = 168/404 (41%), Gaps = 41/404 (10%) Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRK------ 64 L K RV VA+SGGVDSSV A LL + YD+ V ++ +N S Sbjct: 73 LPPHGPQKGDRVTVALSGGVDSSVTALLLAQASHYDLHAVFMRNWNELDESGTMQPGSGG 132 Query: 65 -GSCCAGQDVYDARRVCDTIN-VSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122 C +D +D + VC + + + D + V P + G TP P V CNR Sbjct: 133 ATGCTWQRDWHDVQAVCRHLGNMPVSMVDLSREYWTQVFEPALDEWRQGTTPNPDVSCNR 192 Query: 123 TVKFSDLLSVT---RQLG-ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLF 178 +KF L+ R+ G LATGHY R ++ R D +DQ+Y+L Sbjct: 193 EIKFGALMERLLPEREKGRKSWLATGHYAHVAWSEQ----GRPMLMRAKDRTKDQTYYLS 248 Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQG---------KYF 229 + + +L FPL + K VR+LA++ L A++ +S ICFV Sbjct: 249 SVAEDRLAHAHFPLAHLLKSQVRELAKKHSLPTAERRESMGICFVGTRGSDGSKGISNTQ 308 Query: 230 DVVKRINAGI-ALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSS 288 +N I + G+IV + Q++ H G+ T+GQ + A + +V D ++ Sbjct: 309 GFSTFLNGYITSPPGEIVDEHAQVVATHRGLHTLTVGQGARIRGATSK-YYVAKKDIANN 367 Query: 289 RVIVG---PRESLEVHRIYLREINWLGDGLFEDAVVDG---FKCFVKIRSSQDPVPVFVQ 342 R++ L R+Y+REI W+ + G ++R Q V Sbjct: 368 RIVAVQGKQHPMLLCRRLYVREIEWIWREPPPELKEGGAGKVTLLAQVRHRQVETECIVS 427 Query: 343 R---NDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGII 383 R G V+F + + VA GQ + + LG +I Sbjct: 428 RAKGGGSGYVVEFAEPVLAVAPGQVLGLWRGE----WCLGSAVI 467 >gi|262341313|ref|YP_003284168.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272650|gb|ACY40558.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 398 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 109/393 (27%), Positives = 182/393 (46%), Gaps = 49/393 (12%) Query: 32 DSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFD 91 DSSV A +LK+ GY+VIG+ + + + K + + DA V +N+ V + Sbjct: 15 DSSVAALILKKKGYEVIGLFMHNWEEEDSVFNKCTTWKEDKI-DAMLVAQQLNIPFQVIE 73 Query: 92 YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHYIRSRL 151 ++ ++ VI Y +G+TP P + CNR +KF+ L LGAD++ATGHY+ Sbjct: 74 MKKEYKKYVIDYMFHEYESGKTPNPDILCNREIKFNIFLKKAIDLGADLIATGHYVNKEK 133 Query: 152 YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDI 211 + + K + DL +DQSYFL TQ QL FPLG + K VR +A + GL Sbjct: 134 IIKN-KKIIYRLLIGKDLNKDQSYFLCQLTQYQLGKTLFPLGLLTKNQVRKIAEKNGLRN 192 Query: 212 ADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL----------------------- 248 A K +SQ +CFV + K + +++ I +G++V + Sbjct: 193 AHKKESQGLCFVGKIKLSEFLQK--KIIPKKGEVVCINSDALVYKENQFPFPSSKEEELL 250 Query: 249 -----------NGQILGRHNGIINYTIGQRRGLGVAM-GEPLFVVYLDKNSSRVIVG--- 293 +G+I+G H G +T GQR+G+ + + LFV+ D + V G Sbjct: 251 FLSRKKKYKKSDGKIIGYHKGAHCFTKGQRKGIALGGYQKALFVIETDVKENIVYTGIGK 310 Query: 294 PRESLEVHRIYLRE--INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD 351 L ++++E I+W+ + L + F +IR Q + + G++++ Sbjct: 311 KHPGLYRKSLFIQEKNIHWIREDL-SLKEGEKMDVFCRIRYRQSLQKSKLYKIKKGMFIE 369 Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 FE + + GQ +Y ++G G+IS Sbjct: 370 FETMQCAITEGQFAAWYIG----KELVGSGVIS 398 >gi|319902815|ref|YP_004162543.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides helcogenes P 36-108] gi|319417846|gb|ADV44957.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides helcogenes P 36-108] Length = 354 Score = 356 bits (914), Expect = 4e-96, Method: Composition-based stats. Identities = 115/367 (31%), Positives = 171/367 (46%), Gaps = 19/367 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + V +SGGVDSSVV LL GY +++ K C A +D+ A + Sbjct: 1 MNIAVLLSGGVDSSVVVHLLCEQGYRPSLFYIKI---GKDDADYMDCAAEEDLEIASAIA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + V D + + V + G TP P V CN+ +KF + D Sbjct: 58 RRYGLPLEVVDLHREYWDNVAAYAIDKISRGLTPNPDVMCNKLIKFGCFERRAGK-DFDF 116 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY + L G + + +D +DQ+ FL Q+ L FPLG + K V Sbjct: 117 TATGHYATTVLQTG-----KIWLGTAVDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKHEV 171 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259 RD+A L A + DSQ ICF+ + Y D V+R EGDIV L G+ +G+H G Sbjct: 172 RDIALRAKLPSARRRDSQGICFLGKINYNDFVRRFLGE--REGDIVELETGKKIGKHRGY 229 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGDGLF 316 +TIGQR+GLG++ G P FVV D + + V V E + +R+ +++ D + Sbjct: 230 WFHTIGQRKGLGLSGG-PWFVVRKDVDGNVVYVSRGYNTEQQFGNEFCIRDFHFITDNPW 288 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 D V + K KIR + + + + R + G ++ ++ G+A GQ V Y D Sbjct: 289 GD-VENDIKVTFKIRHTPEFIKGRLLREEGGYHIVSDEKLQGIAPGQFGVVY--DVASRL 345 Query: 377 VLGGGII 383 +G G I Sbjct: 346 CIGSGEI 352 >gi|308183444|ref|YP_003927571.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori PeCan4] gi|308065629|gb|ADO07521.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori PeCan4] Length = 342 Score = 356 bits (914), Expect = 4e-96, Method: Composition-based stats. Identities = 122/368 (33%), Positives = 196/368 (53%), Gaps = 32/368 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ V +SGGVDSS A LK G++++G+ L+L+ S K + +A++ C Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG + Sbjct: 53 EFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + + +D +DQSYFL+A + + L FPLGD+ K+ + Sbjct: 113 IATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167 Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 + LA +G + +SQ+ICFV++ Y D +K+ + EG + +L G+++G H Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEVIGTH 224 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G + YTIG+R+G + EP FVV +D + +IVG +E L H + + + + D Sbjct: 225 KGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLMKDF- 283 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + F+K R P FV D + V+F++ GVA GQA V Y D Sbjct: 284 ------KDGEYFIKARYRSVPAKAFVSLKDGMIEVEFKEPFYGVAKGQALVVYKDDI--- 334 Query: 376 RVLGGGII 383 +LGGG+I Sbjct: 335 -LLGGGVI 341 >gi|317010016|gb|ADU80596.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori India7] Length = 342 Score = 356 bits (914), Expect = 4e-96, Method: Composition-based stats. Identities = 121/368 (32%), Positives = 196/368 (53%), Gaps = 32/368 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ V +SGGVDSS A LK G++++G+ L+L+ S K + + ++ C Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNVQKAC 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG + Sbjct: 53 EFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + + +D +DQSYFL+A + + L FPLGD+ K+ + Sbjct: 113 IATGHYARVKEI-----DKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167 Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 + LA +G + +SQ+ICFV++ Y D +K+ + EG + +L G+++G H Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEVIGTH 224 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G + YTIG+R+G V EP FVV +D + ++VG +E L H + + + + D Sbjct: 225 KGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKDF- 283 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + F+K R P FV D+ + V+F++ GVA GQA V Y D Sbjct: 284 ------KNGEYFIKARYRSVPTKAFVSLKDEVIEVEFKEPFYGVAKGQALVVYQDDI--- 334 Query: 376 RVLGGGII 383 +LGGG+I Sbjct: 335 -LLGGGVI 341 >gi|317178374|dbj|BAJ56162.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori F30] Length = 342 Score = 356 bits (914), Expect = 4e-96, Method: Composition-based stats. Identities = 124/368 (33%), Positives = 195/368 (52%), Gaps = 32/368 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ V +SGGVDSS A LK G++++G+ L+L+ S K + + ++ C Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNTQKAC 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG + Sbjct: 53 EFLGIPLEVLDFQKDFKSAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDYALKLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + + +D +DQSYFL+A + + L FPLGD+ K+ + Sbjct: 113 IATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167 Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 + LA +G + +SQ+ICFV++ Y D +K+ + EG + +L G+I+G H Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEIIGTH 224 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G + YTIG+R+G V EP FVV +D + +IVG +E L H + + + D Sbjct: 225 KGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKDF- 283 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + F+K R P FV D+ + V+FE+ GVA GQA V Y D Sbjct: 284 ------KSGEYFIKARYRSVPAKAFVSLRDEAIEVEFEEPFYGVAKGQALVVYKDDI--- 334 Query: 376 RVLGGGII 383 +LGGG+I Sbjct: 335 -LLGGGVI 341 >gi|288802136|ref|ZP_06407577.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella melaninogenica D18] gi|288335571|gb|EFC74005.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella melaninogenica D18] Length = 360 Score = 356 bits (914), Expect = 4e-96, Method: Composition-based stats. Identities = 109/371 (29%), Positives = 162/371 (43%), Gaps = 23/371 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + R+ V +SGGVDSSVV R G +++ K C + +D+ A Sbjct: 7 EGKRIAVLLSGGVDSSVVVYEFARLGLHPDCFYIKI---GPEEKEDWDCNSEEDLEMATL 63 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V V D + + + V AG TP P V CNR +KF Sbjct: 64 VARRFGCKLEVIDCHKEYWDKVTRYTMEKVKAGFTPNPDVMCNRLIKFGAF-DEKMGHDY 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ATGHY ++ G R+ + D +DQ+ FL QL FP+G +K Sbjct: 123 DLIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIYDWQLKKAIFPIGHYEKN 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR++A L A + DSQ ICF+ Y + V+R GD++ L G+ +G H Sbjct: 178 EVREIAERENLINAHRKDSQGICFLGNIDYNEYVRRYLGEEI--GDVIELETGKKIGEHK 235 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314 G+ +TIGQR+GLG+ G P FV+ D + + V L + ++L +G Sbjct: 236 GLWFHTIGQRKGLGLGGG-PWFVIKKDVTKNILYVSHGYDPATAYKKDFPLHDFHFLTEG 294 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + K KIR + + P V+ +D + ++ GVA GQ CV Y D Sbjct: 295 I----TTLPEKITFKIRHTPEYHPATVEQLSDGRCIIHSTENIHGVAPGQFCVVY--DEQ 348 Query: 374 EARVLGGGIIS 384 R G G I+ Sbjct: 349 HHRCFGSGEIT 359 >gi|317182580|dbj|BAJ60364.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori F57] Length = 342 Score = 356 bits (914), Expect = 4e-96, Method: Composition-based stats. Identities = 123/368 (33%), Positives = 195/368 (52%), Gaps = 32/368 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ V +SGGVDSS A LK G++++G+ L+L+ S K + +A++ C Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + V D+++ F++AV F S+Y G+TP PC CN +KF L +LG + Sbjct: 53 EFLGIPLEVLDFQKDFKSAVYDAFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + + +D +DQSYFL+A + + L FPLGD+ K+ + Sbjct: 113 IATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167 Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 + LA +G + +SQ+ICFV++ Y D +K+ + EG + +L G+++G H Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEVIGTH 224 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G + YTIG+R+G V EP FVV +D + +IVG +E L + + + D Sbjct: 225 KGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATRFLKAKNKSLTKDF- 283 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + F+K R P FV D+ + V+FE+ GVA GQA V Y D Sbjct: 284 ------KNGEYFIKARYRSVPAKAFVSLRDEAIEVEFEEPFYGVAKGQALVVYKDDI--- 334 Query: 376 RVLGGGII 383 +LGGG+I Sbjct: 335 -LLGGGVI 341 >gi|268680794|ref|YP_003305225.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Sulfurospirillum deleyianum DSM 6946] gi|268618825|gb|ACZ13190.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Sulfurospirillum deleyianum DSM 6946] Length = 339 Score = 356 bits (914), Expect = 4e-96, Method: Composition-based stats. Identities = 117/370 (31%), Positives = 188/370 (50%), Gaps = 36/370 (9%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ + MSGG+DSS A LLK +G++V+G+ L+L++ K G ++ + +V Sbjct: 1 MKIALLMSGGIDSSYCAYLLKEEGHEVVGIYLKLHDDDK--------KHGVNIANIEKVS 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + ++ D + F+ + F SY G TP PC CN +KF + G + Sbjct: 53 QHLGIKTHIIDAKALFKEQIYDYFVRSYEQGLTPNPCAFCNPKMKFGFAFEKALEFGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + D +DQSYFLF ++ + + FPLG+MKKE + Sbjct: 113 IATGHYARVKEG---------HIQEAKDKSKDQSYFLFGLKREVIEKIIFPLGEMKKEEI 163 Query: 201 RDLAREMGLD----IADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 + +A E L + DSQ+ICFV Y D++++ + +G I +G+++G H Sbjct: 164 KPIALEK-LPWLGSLESYKDSQEICFVTDT-YIDILQKHL-NVDQKGLIKDTSGKVIGEH 220 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G ++YTIG+R+GL + +P FVV +D ++ VI G +E L R+ + + L + Sbjct: 221 KGYMHYTIGKRKGLTINGAHDPHFVVGIDAKTNTVIAGKKEELLQKRVVAQNFS-LAEDF 279 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 E VK+R V V+ D + + E+ G+ASGQA V Y +D Sbjct: 280 KEG------TYGVKVRYRSPQVKAHVKIEGDKIITELEEGVYGLASGQALVVYQND---- 329 Query: 376 RVLGGGIISG 385 VLGGG I Sbjct: 330 LVLGGGWIEA 339 >gi|47678421|emb|CAG30331.1| dJ1163J1.4 [Homo sapiens] gi|109451226|emb|CAK54474.1| TRMU [synthetic construct] gi|109451804|emb|CAK54773.1| TRMU [synthetic construct] gi|119593832|gb|EAW73426.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase, isoform CRA_e [Homo sapiens] gi|162844904|emb|CAP58845.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [Homo sapiens] gi|208965646|dbj|BAG72837.1| tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase [synthetic construct] Length = 376 Score = 356 bits (914), Expect = 4e-96, Method: Composition-based stats. Identities = 106/367 (28%), Positives = 165/367 (44%), Gaps = 45/367 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 VV A+SGGVDS+V A LL+R GY V GV ++ ++S G C A +D DA RVC Sbjct: 6 HVVCALSGGVDSAVAALLLRRRGYQVTGVFMKNWDSLDEH---GVCTADKDCEDAYRVCQ 62 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADV 140 +++ + Y + + N V F + Y G TP P + CN+ +KFS LGAD Sbjct: 63 ILDIPFHQVSYVKEYWNDVFSDFLNEYEKGRTPNPDIVCNKHIKFSCFFHYAVDNLGADA 122 Query: 141 LATGHYIRSRLYVGDDGKRRR------------------IMCRPMDLERDQSYFLFATTQ 182 +ATGHY R+ L + +++ + + D +DQ++FL +Q Sbjct: 123 IATGHYARTSLEDEEVFEQKHVKKPEGLFRNRFEVRNAVKLLQAADSFKDQTFFLSQVSQ 182 Query: 183 QQLCDLRFPLGDMKKESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIAL 241 L FPLG + KE V+ +A E L + K +S +CF+ + + + + Sbjct: 183 DALRRTIFPLGGLTKEFVKKIAAENRLHHVLQKKESMGMCFIGKRNFEHFLLQYLQ--PR 240 Query: 242 EGDIVHL-NGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RES 297 G + + + ++LG H G YT+GQR +G + EP +VV D V V P + Sbjct: 241 PGHFISIEDNKVLGTHKGWFLYTLGQRANIG-GLREPWYVVEKDSVKGDVFVAPRTDHPA 299 Query: 298 LEVHRIYLREINWLGDGLFEDAVVDG-FKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSE 356 L + ++W+ + V D +C + R V +Q G V Sbjct: 300 LYRDLLRTSRVHWIAEEPPAALVRDKMMECHFRFRHQMALVCCVLQ----GGRV------ 349 Query: 357 VGVASGQ 363 GQ Sbjct: 350 ----PGQ 352 >gi|298735640|ref|YP_003728165.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori B8] gi|298354829|emb|CBI65701.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter pylori B8] Length = 360 Score = 356 bits (913), Expect = 5e-96, Method: Composition-based stats. Identities = 123/369 (33%), Positives = 197/369 (53%), Gaps = 32/369 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ V +SGGVDSS A LK G++++G+ L+L+ S K + +A++ Sbjct: 18 KMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKA 69 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C+ + + V D+++ F+NAV F S+Y G+TP PC CN +KF L QLG + Sbjct: 70 CEFLGIPLEVLDFQKDFKNAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALQLGCE 129 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + + + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 130 KIATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKD 184 Query: 200 VRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 ++ LA +G + +SQ+ICFV++ Y D +K+ + EG + +L G+I+G Sbjct: 185 IKPLALSAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLKGEIIGT 241 Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H G + YTIG+R+G + EP FVV +D + ++VG +E L + + + + + D Sbjct: 242 HKGYMQYTIGKRKGFNIKGALEPHFVVGIDAKKNELVVGKKEDLAMRFLKAKNKSLMKDF 301 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 + F+K R P FV D+ + V+F++ GVA GQA V Y D Sbjct: 302 -------KSGEYFIKARYRSVPAKAFVSLKDEVIEVEFKEPFYGVAKGQALVVYKDDI-- 352 Query: 375 ARVLGGGII 383 +LGGG+I Sbjct: 353 --LLGGGVI 359 >gi|291288175|ref|YP_003504991.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Denitrovibrio acetiphilus DSM 12809] gi|290885335|gb|ADD69035.1| tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase [Denitrovibrio acetiphilus DSM 12809] Length = 344 Score = 356 bits (913), Expect = 5e-96, Method: Composition-based stats. Identities = 119/366 (32%), Positives = 186/366 (50%), Gaps = 29/366 (7%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81 +V++AMSGGVDS++ A ++K GYDVIG T++ ++ + ++D + Sbjct: 4 KVLIAMSGGVDSTLTAHIMKEKGYDVIGCTIKFFDE-----------QTEALHDGEKAAK 52 Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141 + + Y DY + F+ VI F +Y G TP PC CNR KF+ L + GA + Sbjct: 53 ELGIDWYYADYTDYFKEDVISYFIRTYIQGRTPNPCAHCNRHAKFNYLFREMKSKGATKI 112 Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201 ATGHY + + D+ +DQSY+L Q + FPLG+M+K V+ Sbjct: 113 ATGHYAGKVKV-----GEKYFFKKGQDVRKDQSYYLCLLKDHQREVIEFPLGEMEKTDVK 167 Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVK-RINAGIALEGDIVHLNGQILGRHNGII 260 A E+GL +ADK +SQDICF++ G Y D ++ +I+ +G + +G+ H GII Sbjct: 168 AKAAELGLSVADKDESQDICFLKGGDYRDFLESKIDKDSIKKGWFI-KDGEKFKEHEGII 226 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLFEDAV 320 YTIGQR+GLG+ EPLFV ++D S +I+G ++ + + + + +F D Sbjct: 227 YYTIGQRKGLGIGYHEPLFVKHIDAESGNIILGNKDEVTGTGVKVHDF------VFPDDH 280 Query: 321 VDGFKCFVKIRSSQDPVPVFVQRN-DDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLG 379 F+ VK+R PVP V+ + + + F++ E GQ Y +D Sbjct: 281 DRVFRAEVKVRYRMAPVPCMVEIHPGNTATILFDRPEFAPTPGQIACVYENDLVTC---- 336 Query: 380 GGIISG 385 GG I Sbjct: 337 GGYIES 342 >gi|261880130|ref|ZP_06006557.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella bergensis DSM 17361] gi|270333185|gb|EFA43971.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella bergensis DSM 17361] Length = 384 Score = 355 bits (912), Expect = 7e-96, Method: Composition-based stats. Identities = 109/391 (27%), Positives = 160/391 (40%), Gaps = 39/391 (9%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD R+ V +SGGVDSSVV L G +++ K + C + +D+ A Sbjct: 7 KDKRIAVLLSGGVDSSVVVYELASHGLHPDCFYIRI---GPEEKEEWDCNSEEDMEMATA 63 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V V D + + + V +G TP P V CNR +KF Sbjct: 64 VAKRFGCKLQVVDCHQEYWSQVTRYTMEKVRSGFTPNPDVMCNRLIKFGAFDEKA-GHDY 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ATGHY ++ G R+ + D +DQ+ FL QL FP+G +K Sbjct: 123 DLIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIEGWQLKKAIFPIGHYEKN 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR++A L A + DSQ ICF+ Y + V+R GDIV L G +G H+ Sbjct: 178 EVREIAEREHLINARRKDSQGICFLGNIDYNEYVRRYLGE--QPGDIVELETGTKIGEHS 235 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314 G +TIGQR+GLG++ G P FV+ D + + V + +++WL + Sbjct: 236 GHWFHTIGQRKGLGLSGG-PWFVIKKDVEHNVLYVSHGYDPETAYKKDFKIHDLHWLTEE 294 Query: 315 LFED----------AVVDGFKCFVKIRSSQDPVPVFV-----------QRNDDGVYVDFE 353 KIR + + P ++ + D + Sbjct: 295 PTPPHHLSEASESQKPGSYIPITFKIRHTPEYHPGYLDLNAASSSDHTELTGDTATIHSL 354 Query: 354 KSEVGVASGQACVFYTSDSNEARVLGGGIIS 384 GVA GQ CV Y D R G G I+ Sbjct: 355 DKIHGVAPGQFCVIY--DEQHHRCFGSGEIT 383 >gi|328944127|ref|ZP_08241592.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Atopobium vaginae DSM 15829] gi|327492096|gb|EGF23870.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Atopobium vaginae DSM 15829] Length = 430 Score = 355 bits (912), Expect = 7e-96, Method: Composition-based stats. Identities = 119/375 (31%), Positives = 182/375 (48%), Gaps = 24/375 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 P RV + MSGGVDS++ AALL+ GYDV + ++ ++ + C D+ DA Sbjct: 66 APFGARVYLGMSGGVDSALSAALLQEWGYDVKAIYMRNWSRDLPGFK---CTWADDLADA 122 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R+ + ++ V+D E+ ++ V+ ++Y G TP P V CN+TVKF + + Sbjct: 123 ERLAVKLGLTLEVWDCEKEYKETVVDYLINAYQHGFTPNPDVMCNQTVKFGTFATRAFEH 182 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM- 195 GAD +ATGHY R V D + R D +DQ+YFL+ L FP+G + Sbjct: 183 GADFIATGHYAR----VYTDRHSHVHLLRAADEHKDQTYFLWRVNPSLLEKTIFPIGSIA 238 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILG 254 KE VR + GL I K DS ICF+ + + ++ GDI+ G +LG Sbjct: 239 SKEIVRQMCATRGLGIESKPDSDGICFIGEVGIRTFL--LDTLSKRAGDIIEWETGNVLG 296 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWL 311 H+G YTIGQR+GL + G +VV D +RV V L + L ++ L Sbjct: 297 HHDGAFLYTIGQRKGLNLGGGPARYVVGTDTERNRVYVTANTKCPDLWCQTMVLDDVYLL 356 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTS 370 + + E A+ V++R + V V+ +D + + FE + +A+GQ+ V Y Sbjct: 357 NESIDEHAL-----YQVRLRHTGKLQDVHVKLIHDHKIELHFESAVPKIAAGQSAVIYQG 411 Query: 371 DSNEARVLGGGIISG 385 +GGGII Sbjct: 412 ----KICVGGGIIQK 422 >gi|161353441|ref|NP_223972.2| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori J99] gi|205371768|sp|Q9ZJQ0|MNMA_HELPJ RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 342 Score = 355 bits (912), Expect = 8e-96, Method: Composition-based stats. Identities = 122/368 (33%), Positives = 195/368 (52%), Gaps = 32/368 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ V +SGGVDSS A LK G++++G+ L+L+ S K + +A++ C Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + V D+++ F++AV F ++Y G+TP PC CN +KF L +LG + Sbjct: 53 EFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + + +D +DQSYFL+A + + L FPLGD+ K+ + Sbjct: 113 IATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167 Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 + LA +G + +SQ+ICFV++ Y D +K+ + EG + +L G+++G H Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEVIGTH 224 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G + YTIG+R+G V EP FVV +D + +IVG +E L H + + + D Sbjct: 225 KGYMQYTIGKRKGFSVKGALEPHFVVGIDAKKNELIVGKKEDLATHSLKAKNKSLTKDF- 283 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + F+K R P FV D + V+F++ GVA GQA V Y D Sbjct: 284 ------KDGEYFIKARYRSVPTKAFVSLKDGMIEVEFKEPFYGVAKGQALVVYKDDI--- 334 Query: 376 RVLGGGII 383 +LGGG+I Sbjct: 335 -LLGGGVI 341 >gi|308234530|ref|ZP_07665267.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Atopobium vaginae DSM 15829] Length = 410 Score = 355 bits (911), Expect = 8e-96, Method: Composition-based stats. Identities = 119/375 (31%), Positives = 182/375 (48%), Gaps = 24/375 (6%) Query: 17 NPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76 P RV + MSGGVDS++ AALL+ GYDV + ++ ++ + C D+ DA Sbjct: 46 APFGARVYLGMSGGVDSALSAALLQEWGYDVKAIYMRNWSRDLPGFK---CTWADDLADA 102 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 R+ + ++ V+D E+ ++ V+ ++Y G TP P V CN+TVKF + + Sbjct: 103 ERLAVKLGLTLEVWDCEKEYKETVVDYLINAYQHGFTPNPDVMCNQTVKFGTFATRAFEH 162 Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM- 195 GAD +ATGHY R V D + R D +DQ+YFL+ L FP+G + Sbjct: 163 GADFIATGHYAR----VYTDRHSHVHLLRAADEHKDQTYFLWRVNPSLLEKTIFPIGSIA 218 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVH-LNGQILG 254 KE VR + GL I K DS ICF+ + + ++ GDI+ G +LG Sbjct: 219 SKEIVRQMCATRGLGIESKPDSDGICFIGEVGIRTFL--LDTLSKRAGDIIEWETGNVLG 276 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWL 311 H+G YTIGQR+GL + G +VV D +RV V L + L ++ L Sbjct: 277 HHDGAFLYTIGQRKGLNLGGGPARYVVGTDTERNRVYVTANTKCPDLWCQTMVLDDVYLL 336 Query: 312 GDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQR-NDDGVYVDFEKSEVGVASGQACVFYTS 370 + + E A+ V++R + V V+ +D + + FE + +A+GQ+ V Y Sbjct: 337 NESIDEHAL-----YQVRLRHTGKLQDVHVKLIHDHKIELHFESAVPKIAAGQSAVIYQG 391 Query: 371 DSNEARVLGGGIISG 385 +GGGII Sbjct: 392 ----KICVGGGIIQK 402 >gi|218130411|ref|ZP_03459215.1| hypothetical protein BACEGG_02000 [Bacteroides eggerthii DSM 20697] gi|217987412|gb|EEC53742.1| hypothetical protein BACEGG_02000 [Bacteroides eggerthii DSM 20697] Length = 365 Score = 355 bits (911), Expect = 8e-96, Method: Composition-based stats. Identities = 114/368 (30%), Positives = 169/368 (45%), Gaps = 19/368 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + V +SGGVDSSVV LL G+ +++ K C A +D+ A V Sbjct: 1 MNIAVLLSGGVDSSVVVHLLCEQGHRPSLFYIKI---GKDDADYMDCSAEEDLEMASAVA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +S V D + + V G TP P V CN+ +KF + D Sbjct: 58 RRYGLSLEVVDLHREYWDNVAAYAIDKVRRGLTPNPDVMCNKLIKFGCFERYAGK-DFDF 116 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY + L G + + +D +DQ+ FL Q+ L FPLG + K+ V Sbjct: 117 TATGHYAATILQNG-----KVWLGTALDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQEV 171 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259 RD+A + L A + DSQ ICF+ + Y D V+R EG I+ L G+ILG H G Sbjct: 172 RDIALKAKLPSARRRDSQGICFLGRINYNDFVRRFLGE--KEGRIIELETGKILGTHRGY 229 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGDGLF 316 +TIGQR+GLG+ G P FVV D + + + V E + +++ +++ + + Sbjct: 230 WFHTIGQRKGLGLGGG-PWFVVRKDTDENVIYVSRGYETEQQYGYEFSMQDFHFITENPW 288 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 E V KIR + D + + ++ DG + E+ G+A GQ V Y D Sbjct: 289 E-GVEGEIPVTFKIRHTPDFIGGKLLQDGDGYRIVSEEKLQGIAPGQFGVVY--DEASRL 345 Query: 377 VLGGGIIS 384 +G G I Sbjct: 346 CIGSGEIK 353 >gi|317473871|ref|ZP_07933151.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA] gi|316909948|gb|EFV31622.1| tRNA methyl transferase [Bacteroides eggerthii 1_2_48FAA] Length = 365 Score = 355 bits (911), Expect = 8e-96, Method: Composition-based stats. Identities = 114/368 (30%), Positives = 169/368 (45%), Gaps = 19/368 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + V +SGGVDSSVV LL G+ +++ K C A +D+ A V Sbjct: 1 MNIAVLLSGGVDSSVVVHLLCEQGHRPSLFYIKI---GKDDADYMDCSAEEDLEMASAVA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +S V D + + V G TP P V CN+ +KF + D Sbjct: 58 RRYGLSLEVVDLHREYWDNVAAYAIDKVRRGLTPNPDVMCNKLIKFGCFERYAGK-DFDF 116 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY + L G + + +D +DQ+ FL Q+ L FPLG + K+ V Sbjct: 117 TATGHYAATILQNG-----KVWLGTALDPVKDQTDFLAQIDYLQVSKLMFPLGGLMKQEV 171 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259 RD+A + L A + DSQ ICF+ + Y D V+R EG I+ L G+ILG H G Sbjct: 172 RDIALKAKLPSARRRDSQGICFLGKINYNDFVRRFLGE--KEGRIIELETGKILGTHRGY 229 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGDGLF 316 +TIGQR+GLG+ G P FVV D + + + V E + +++ +++ + + Sbjct: 230 WFHTIGQRKGLGLGGG-PWFVVRKDTDENVIYVSRGYETEQQYGYEFSMQDFHFITENPW 288 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 E V KIR + D + + ++ DG + E+ G+A GQ V Y D Sbjct: 289 E-GVEGEIPVTFKIRHTPDFIGGKLLQDGDGYRIVSEEKLQGIAPGQFGVVY--DEASRL 345 Query: 377 VLGGGIIS 384 +G G I Sbjct: 346 CIGSGEIK 353 >gi|2314503|gb|AAD08378.1| conserved hypothetical protein [Helicobacter pylori 26695] Length = 360 Score = 355 bits (911), Expect = 9e-96, Method: Composition-based stats. Identities = 119/369 (32%), Positives = 195/369 (52%), Gaps = 32/369 (8%) Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79 M++ V +SGGVDSS A LK G++++G+ L+L+ S K + +A++ Sbjct: 18 KMKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKA 69 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 C+ + + V D+++ F++AV F ++Y G+TP PC CN +KF L +LG + Sbjct: 70 CEFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCE 129 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199 +ATGHY R + + + +D +DQSYFL+A + + L FPLGD+ K+ Sbjct: 130 KIATGHYARVKEI-----DKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKD 184 Query: 200 VRDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255 ++ LA +G + +SQ+ICFV++ Y D +K+ + EG + +L G+++G Sbjct: 185 IKPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEVIGT 241 Query: 256 HNGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H G + YTIG+R+G + EP FVV +D + ++VG +E L H + + + + D Sbjct: 242 HKGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKDF 301 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNE 374 + F+K R P V D+ + V F++ GVA GQA V Y D Sbjct: 302 -------KDGEYFIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYKDDI-- 352 Query: 375 ARVLGGGII 383 +LGGG+I Sbjct: 353 --LLGGGVI 359 >gi|297626267|ref|YP_003688030.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922032|emb|CBL56594.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 357 Score = 355 bits (911), Expect = 9e-96, Method: Composition-based stats. Identities = 136/371 (36%), Positives = 193/371 (52%), Gaps = 31/371 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 MRV VA+SGGVDS+V AA + G++ +GV L L + + DAR V Sbjct: 1 MRVAVALSGGVDSAVTAARVVEAGHEAVGVHLLL-----------GAGSVPETRDARGVA 49 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 D + + V+D +RF + V+ F SSYAAG TP PC+ CNR VKF LLS + G D Sbjct: 50 DAVGIPLVVWDLRDRFEHRVLDYFTSSYAAGRTPNPCLRCNREVKFRGLLSRGIEEGFDA 109 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM-KKES 199 +ATGHY R + + R ++ +DQSY L +Q L FPLG + K+ Sbjct: 110 VATGHYARLQPARD----GSIGLHRAANVRKDQSYVLGVLSQDDLRHCLFPLGTVTTKDE 165 Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGI 259 VR+ A GL +A K DS DICFV +G + + A +GDIV G +LG H+GI Sbjct: 166 VREEAERRGLPVAHKPDSTDICFVTEGGAAEFLAGRLAD--RQGDIVDARGTVLGTHHGI 223 Query: 260 INYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 ++T+GQR+GLG+ G+P +V LD ++ V VG L V ++ + +++ G L Sbjct: 224 QHFTVGQRKGLGLRRPADDGKPRYVTALDAATNTVHVGQGRELLVGQVDVEDLSDTGTAL 283 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 ++ V+ R+ VP ++ D + V F + GVA GQ VFY +D Sbjct: 284 GPH-----WRGLVQFRAHGRAVPARLEEADGQLRVHFAEPVSGVAPGQFIVFYDAD---- 334 Query: 376 RVLGGGIISGS 386 RV G I S Sbjct: 335 RVRGAAEIVAS 345 >gi|255010205|ref|ZP_05282331.1| tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase [Bacteroides fragilis 3_1_12] Length = 353 Score = 355 bits (911), Expect = 9e-96, Method: Composition-based stats. Identities = 111/371 (29%), Positives = 174/371 (46%), Gaps = 36/371 (9%) Query: 27 MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVS 86 MSGG DSSV A LL GY+V GVT + Y +++ + DAR + + + Sbjct: 1 MSGGTDSSVAAMLLLEAGYEVTGVTFRFYEFNDSTEY---------LEDARALATRLGIE 51 Query: 87 HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLATGHY 146 H +D E FR ++ F Y AG TP+PC CN +K+ L + ++G LATGHY Sbjct: 52 HITYDAREIFRKKIVDYFIDEYMAGHTPVPCTLCNNWLKWPLLAKIADEMGIFYLATGHY 111 Query: 147 IRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLARE 206 +R + G + D ++DQS+FL+ Q L + P+G+M K R A Sbjct: 112 VRKKWMDGS-----YYITLAADPDKDQSFFLWGLKQDILQRMLLPMGEMTKPEARAYAAG 166 Query: 207 MGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIA-----------LEGDIVHLNGQILG 254 G + ++ K DS +CF Y +K+ +G + +G + Sbjct: 167 RGFEKVSKKKDSIGVCFCPL-DYRSFLKKHLCDAGGDRSNKIIREVGKGRFLDESGNFIA 225 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H G YTIGQRRGLG+ + +FV + ++ VI+ P +SLE ++L++ N + Sbjct: 226 WHEGYPFYTIGQRRGLGIQLNRAVFVKEIHPETNEVILAPLKSLEKSEMWLKDWNIIN-- 283 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 E ++ V+IR + V +G +++ + +A GQA FY Sbjct: 284 --ESRLLGYDDIIVRIRYRKQENHCSVTITPEGLLHIQLHEPLSAIAEGQAAAFYKD--- 338 Query: 374 EARVLGGGIIS 384 +LGGGII+ Sbjct: 339 -GLLLGGGIIT 348 >gi|307638008|gb|ADN80458.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyl transferase [Helicobacter pylori 908] gi|325996611|gb|ADZ52016.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Helicobacter pylori 2018] gi|325998201|gb|ADZ50409.1| tRNA 5-methylaminomethyl-2-thiouridylate-methyltransferase [Helicobacter pylori 2017] Length = 342 Score = 355 bits (911), Expect = 1e-95, Method: Composition-based stats. Identities = 121/368 (32%), Positives = 196/368 (53%), Gaps = 32/368 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ V +SGGVDSS A LK G++++G+ L+L+ S K + +A++ C Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + V D+++ F++AV F ++Y G+TP PC CN +KF L +LG + Sbjct: 53 EFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALKHALKLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + + +D +DQSYFL+A + + L FPLGD+ K+ + Sbjct: 113 IATGHYARVKEI-----DKISYIQEAVDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167 Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 + LA +G + +SQ+ICFV++ Y D +K+ + EG + +L G+I+G H Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLKGEIIGTH 224 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G + YTIG+R+G + EP FVV +D + +IVG +E L + + + + D Sbjct: 225 KGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELIVGKKEDLATRFLKAKNKSLMKDF- 283 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + F+K R P FV D+ + V+F++ GVA GQA V Y D Sbjct: 284 ------KSGEYFIKARYRSVPAKAFVSLEDEVIEVEFKEPFYGVAKGQALVVYKDDI--- 334 Query: 376 RVLGGGII 383 +LGGG+I Sbjct: 335 -LLGGGVI 341 >gi|217032089|ref|ZP_03437589.1| hypothetical protein HPB128_16g49 [Helicobacter pylori B128] gi|216946237|gb|EEC24845.1| hypothetical protein HPB128_16g49 [Helicobacter pylori B128] Length = 342 Score = 354 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 123/368 (33%), Positives = 197/368 (53%), Gaps = 32/368 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ V +SGGVDSS A LK G++++G+ L+L+ S K + +A++ C Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + V D+++ F+NAV F S+Y G+TP PC CN +KF L QLG + Sbjct: 53 EFLGIPLEVLDFQKDFKNAVYDEFISAYEEGQTPNPCALCNPLMKFGLALDHALQLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + + +D +DQSYFL+A + + L FPLGD+ K+ + Sbjct: 113 IATGHYARVKEI-----DKVSYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167 Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 + LA +G + +SQ+ICFV++ Y D +K+ + EG + +L G+I+G H Sbjct: 168 KPLALSAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLKGEIIGTH 224 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G + YTIG+R+G + EP FVV +D + ++VG +E L + + + + + D Sbjct: 225 KGYMQYTIGKRKGFNIKGALEPHFVVGIDAKKNELVVGKKEDLAMRFLKAKNKSLMKDF- 283 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + F+K R P FV D+ + V+F++ GVA GQA V Y D Sbjct: 284 ------KSGEYFIKARYRSVPAKAFVSLKDEVIEVEFKEPFYGVAKGQALVVYKDDI--- 334 Query: 376 RVLGGGII 383 +LGGG+I Sbjct: 335 -LLGGGVI 341 >gi|289705112|ref|ZP_06501516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Micrococcus luteus SK58] gi|289558140|gb|EFD51427.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Micrococcus luteus SK58] Length = 378 Score = 354 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 141/381 (37%), Positives = 190/381 (49%), Gaps = 23/381 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGS--CCAGQDVYDARR 78 M+V+ AMSGGVDS+V AA G+DV+GV L L + + R GS CC +D DA R Sbjct: 1 MKVLAAMSGGVDSAVAAARAVDAGHDVVGVHLAL-SRMPGTLRTGSRGCCTIEDASDAWR 59 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 C+ + + Y +D+ ERF V+ F + Y AG TP PC+ CN +KF+ LL +LG Sbjct: 60 ACERLGIPFYTWDFSERFAEDVVDDFVAEYEAGRTPNPCMRCNERIKFAALLERALELGF 119 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-K 197 D + TGHY R G DG + R D +DQSY L T QL FPL D K Sbjct: 120 DAVCTGHYAAVRP--GPDGS--LELHRAADDAKDQSYVLGVLTSDQLAHCLFPLADTPSK 175 Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 E VR A E GL +A K DS DICF+ G + G IV GQ LG H Sbjct: 176 ELVRAEAAERGLSVAAKPDSHDICFIPDGDTRGWLAERIDLA--PGPIVDAEGQELGTHA 233 Query: 258 GIINYTIGQRRGLGVA----MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD 313 G +T+GQR+GL + G+P FV+ + + V+VG RE L+V RI +W G Sbjct: 234 GAQAFTVGQRKGLAIGRPAPDGKPRFVLEVRPKENTVVVGGRELLDVDRITGIRPSWAGA 293 Query: 314 GLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDD-----GVYVDFEKSEVGVASGQACVFY 368 + E F C ++ R+ + V ++ D G ++ + GVA GQ V Y Sbjct: 294 PVPEARTGAWFDCALQFRAHGEIVEARARQRADEAGNPGWEIEPARPLRGVAPGQTAVLY 353 Query: 369 TSDSNEARVLGGGIISGSKRS 389 RVLG I ++ + Sbjct: 354 RG----TRVLGQATIDTARNA 370 >gi|85860139|ref|YP_462341.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Syntrophus aciditrophicus SB] gi|123517192|sp|Q2LVR6|MNMA2_SYNAS RecName: Full=tRNA-specific 2-thiouridylase mnmA 2 gi|85723230|gb|ABC78173.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Syntrophus aciditrophicus SB] Length = 342 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 109/329 (33%), Positives = 165/329 (50%), Gaps = 30/329 (9%) Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135 AR + + +V D E F ++ Y TP PCV CNR +KF LL + Sbjct: 18 ARHAAHQLGIPLHVADVTETFDEEIVQYLTREYLVARTPNPCVVCNRKIKFKTLLYYADR 77 Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195 L +ATGHY R R + R +D +DQSYFLF Q+QL + FPLG++ Sbjct: 78 LACHFVATGHYARVFHNRQ---TGRYALLRGLDQAKDQSYFLFLLGQEQLSRILFPLGEL 134 Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRI-NAGIALEGDIVHLNGQILG 254 K+ VR +A MG++ + +SQ+ICF+ Y ++R + A+ GDIV +G++LG Sbjct: 135 TKKEVRSVALTMGVEAVREKESQEICFIPDDDYKTFIERHMGSSPAIPGDIVDRSGRLLG 194 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 HNGI ++TIGQR+GL +A P +V+ +D+ +RV+VG E + + ++W+ Sbjct: 195 SHNGIHSFTIGQRKGLHIAAPRPYYVLAIDREKNRVVVGHEEEQGFSGLIVSGVSWIDGE 254 Query: 315 LFEDAVVDGFKCFVKIRSSQDPV-------------------PVFVQRNDDGVYVDFEKS 355 + V F+ V+IR V P + D + + F++ Sbjct: 255 SPREEV---FETLVRIRYRHRGVSSVVCPLSAGDEICPATGRPADHEEAGDKLIIRFQEP 311 Query: 356 EVGVASGQACVFYTSDSNEARVLGGGIIS 384 + VA GQA VFY+ D RV+GGG I Sbjct: 312 QRAVAPGQAAVFYSDD----RVIGGGWIE 336 >gi|154509242|ref|ZP_02044884.1| hypothetical protein ACTODO_01767 [Actinomyces odontolyticus ATCC 17982] gi|153798876|gb|EDN81296.1| hypothetical protein ACTODO_01767 [Actinomyces odontolyticus ATCC 17982] Length = 363 Score = 354 bits (909), Expect = 2e-95, Method: Composition-based stats. Identities = 140/377 (37%), Positives = 193/377 (51%), Gaps = 23/377 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRV 79 MRV+ A+SGGVDS+V AA G+DV+GV + L + + + CC+ +D DA R Sbjct: 1 MRVLAALSGGVDSAVAAAKAVEAGHDVVGVHMALSSQPQECRIGSRGCCSIEDAGDAARA 60 Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139 + I + YV+D + F VI F + Y AG TP PCV CN VKF +L + R LG D Sbjct: 61 AEIIGIPFYVWDLAQEFEQTVITDFVAQYKAGRTPNPCVRCNEFVKFRELATRARALGFD 120 Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMK-KE 198 + TGHY DG + R D +DQSY L ++L + PLGD K Sbjct: 121 AVCTGHYAAIV-----DGAAGPELHRGADNLKDQSYVLAVMGPEELHRVVLPLGDAPNKA 175 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258 VR A +GL +++K DS DICF+ G ++ A EG+IV +G++LGRH G Sbjct: 176 WVRSEAERLGLGVSNKPDSYDICFIPDGDTQGFLRAHLG--AAEGEIVSPDGEVLGRHEG 233 Query: 259 IINYTIGQRRGLGVAM----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 NYT+GQR+GLG+ G P +V+ +++V+VG E L + RI + WL Sbjct: 234 YWNYTVGQRKGLGIGAPAPDGRPRYVLETRPETNQVVVGASELLSISRITATDAVWLASD 293 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPV---FVQRNDDGVYVDFEKSEVGVASGQACVFYTSD 371 D D FV++R+ PVPV + + V S GVA GQ+ V Y Sbjct: 294 ---DDGSDATDLFVQLRAHGTPVPVASLTRDLDAGTISVVLASSARGVARGQSMVVYRG- 349 Query: 372 SNEARVLGGGIISGSKR 388 RVLG G I + R Sbjct: 350 ---TRVLGEGTIDATGR 363 >gi|167764091|ref|ZP_02436218.1| hypothetical protein BACSTE_02474 [Bacteroides stercoris ATCC 43183] gi|167698207|gb|EDS14786.1| hypothetical protein BACSTE_02474 [Bacteroides stercoris ATCC 43183] Length = 350 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 113/358 (31%), Positives = 170/358 (47%), Gaps = 23/358 (6%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 RV++ MSGG DSSV A L+ GY+V GVT + Y ++ + DAR Sbjct: 2 KSKERVLLGMSGGTDSSVAAMKLQEAGYEVTGVTFRFYEVGGKTEY---------LEDAR 52 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + + + H +D E FR +I F Y AG TP+PC CN +K+ L + + G Sbjct: 53 ALAGRLGIEHITYDARELFRERIIRYFIDEYLAGHTPVPCTLCNNELKWKLLAEIADEKG 112 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 ++TGHY+R + + +D ++DQ++FL+ Q L + P+GDM K Sbjct: 113 IYWISTGHYVRKLFLEDN-----YYIAPAVDRDKDQTFFLWGLKQDILQRMLLPMGDMTK 167 Query: 198 ESVRDLAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD--IVHLNGQILG 254 E R A E G +A K DS +CF Y +KR L G + G +LG Sbjct: 168 EDARAYAAERGFMRVAAKKDSIGVCFCPL-DYRSFLKREVPMEQLPGRGHFLDEKGNVLG 226 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H G YTIGQRRGLG+ + +FV + ++ V++ P SL +YL++ N + Sbjct: 227 WHEGYPFYTIGQRRGLGIHLNRAVFVKEVRMETNEVVLAPLASLYKKEMYLKDWNLIS-- 284 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSD 371 V+ VKIR + V + ++G + V + +A GQA FY +D Sbjct: 285 --AHRVLGAETVIVKIRYRKQANRCMVAQEENGHLRVSLLEPLESIAPGQAAAFYDAD 340 >gi|302346886|ref|YP_003815184.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella melaninogenica ATCC 25845] gi|302150717|gb|ADK96978.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella melaninogenica ATCC 25845] Length = 360 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 109/371 (29%), Positives = 162/371 (43%), Gaps = 23/371 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 + R+ V +SGGVDSSVV R G +++ K C + +D+ A Sbjct: 7 EGKRIAVLLSGGVDSSVVVYEFARLGLHPDCFYIKI---GPEEKEDWDCNSEEDLEMATL 63 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V V D + + + V AG TP P V CNR +KF Sbjct: 64 VTRRFGCKLEVIDCHKEYWDQVTRYTMEKVKAGFTPNPDVMCNRLIKFGAF-DEKMGHDY 122 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ATGHY ++ G R+ + D +DQ+ FL QL FP+G +K Sbjct: 123 DLIATGHYAQTEWIDG-----RKWLTTSPDPVKDQTDFLAQIYDWQLKKAIFPIGHYEKN 177 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR++A L A + DSQ ICF+ Y + V+R GD++ L G+ +G H Sbjct: 178 EVREIAERENLINAHRKDSQGICFLGNIDYNEYVRRYLGEEI--GDVIELETGKKIGEHK 235 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314 G+ +TIGQR+GLG+ G P FV+ D + + V L + ++L +G Sbjct: 236 GLWFHTIGQRKGLGLGGG-PWFVIKKDVTKNILYVSHGYDPATAYKKDFPLHDFHFLTEG 294 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQ-RNDDGVYVDFEKSEVGVASGQACVFYTSDSN 373 + K KIR + + P V+ +D + ++ GVA GQ CV Y D Sbjct: 295 I----TTLPEKITFKIRHTPEYHPATVEQLSDGRCIIHSTENIHGVAPGQFCVVY--DEQ 348 Query: 374 EARVLGGGIIS 384 R G G I+ Sbjct: 349 HHRCFGSGEIT 359 >gi|270293669|ref|ZP_06199871.1| tRNA methyl transferase [Bacteroides sp. D20] gi|270275136|gb|EFA20996.1| tRNA methyl transferase [Bacteroides sp. D20] Length = 366 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 117/367 (31%), Positives = 173/367 (47%), Gaps = 19/367 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + V +SGGVDSSVV LL GY +++ + C A +D+ A + Sbjct: 13 MNIAVLLSGGVDSSVVVHLLCEQGYRPSLFYIKI---GRDDADYMDCSAEEDMEMASAIA 69 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +S V D + + V G TP P V CN+ +KF + DV Sbjct: 70 RRYGLSLEVVDLHREYWDQVAAYAIDKIRRGLTPNPDVMCNKLIKFGCFEQRVGK-DFDV 128 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY + L G + + D +DQ+ FL Q+ L FPLG + K V Sbjct: 129 TATGHYATTVLRDG-----KTWLGTAADSVKDQTDFLAQIDYLQVSKLMFPLGRLMKNEV 183 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259 RD+A GL A + DSQ ICF+ + Y D V+R EGDIV L G+ LG+H G Sbjct: 184 RDIALRAGLPSARRRDSQGICFLGKIDYNDFVRRFLGE--REGDIVELETGRKLGKHRGY 241 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV--GPRESL-EVHRIYLREINWLGDGLF 316 +TIGQR+GLG+ G P FVV D + + V G +L + + + +++ D + Sbjct: 242 WFHTIGQRKGLGLGGG-PWFVVRKDVEENVIYVSRGCDTALQYGYEFRMYDFHFITDNPW 300 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + A + + KIR + + V +Q+ +G + E+ G+A GQ V Y +D+ Sbjct: 301 KGA-QEEVEVTFKIRHTPEFVKGRLQKEAEGYRIVSEEKLQGIAPGQFGVVYDADAR--L 357 Query: 377 VLGGGII 383 +G G I Sbjct: 358 CVGSGEI 364 >gi|160888906|ref|ZP_02069909.1| hypothetical protein BACUNI_01326 [Bacteroides uniformis ATCC 8492] gi|317479366|ref|ZP_07938500.1| tRNA methyl transferase [Bacteroides sp. 4_1_36] gi|156861805|gb|EDO55236.1| hypothetical protein BACUNI_01326 [Bacteroides uniformis ATCC 8492] gi|316904440|gb|EFV26260.1| tRNA methyl transferase [Bacteroides sp. 4_1_36] Length = 354 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 117/367 (31%), Positives = 173/367 (47%), Gaps = 19/367 (5%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M + V +SGGVDSSVV LL GY +++ + C A +D+ A + Sbjct: 1 MNIAVLLSGGVDSSVVVHLLCEQGYRPSLFYIKI---GRDDADYMDCSAEEDMEMASAIA 57 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 +S V D + + V G TP P V CN+ +KF + DV Sbjct: 58 RRYGLSLEVVDLHREYWDQVAAYAIDKIRRGLTPNPDVMCNKLIKFGCFEQRVGK-DFDV 116 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 ATGHY + L G + + D +DQ+ FL Q+ L FPLG + K V Sbjct: 117 TATGHYATTVLRDG-----KTWLGTAADSVKDQTDFLAQIDYLQVSKLMFPLGRLMKNEV 171 Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGI 259 RD+A GL A + DSQ ICF+ + Y D V+R EGDIV L G+ LG+H G Sbjct: 172 RDIALRAGLPSARRRDSQGICFLGKIDYNDFVRRFLGE--REGDIVELETGRKLGKHRGY 229 Query: 260 INYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIV--GPRESL-EVHRIYLREINWLGDGLF 316 +TIGQR+GLG+ G P FVV D + + V G +L + + + +++ D + Sbjct: 230 WFHTIGQRKGLGLGGG-PWFVVRKDVEENVIYVSRGCDTALQYGYEFRMYDFHFITDNPW 288 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + A + + KIR + + V +Q+ +G + E+ G+A GQ V Y +D+ Sbjct: 289 KGA-QEEVEVTFKIRHTPEFVKGRLQKEAEGYRIVSEEKLQGIAPGQFGVVYDADAR--L 345 Query: 377 VLGGGII 383 +G G I Sbjct: 346 CVGSGEI 352 >gi|329964462|ref|ZP_08301516.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides fluxus YIT 12057] gi|328524862|gb|EGF51914.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacteroides fluxus YIT 12057] Length = 357 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 120/370 (32%), Positives = 179/370 (48%), Gaps = 26/370 (7%) Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77 RV++ MSGG DSSV A L+ GY+V GVT + Y A+ + DAR Sbjct: 9 KSKERVLLGMSGGTDSSVAAMRLQDAGYEVTGVTFRFYEKDGATNY---------LDDAR 59 Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137 + + + H +D E FR+ +I F Y AG TP+PC CN +K++ L + + G Sbjct: 60 SLASRLGIEHVTYDAREMFRSRIIRYFIDEYLAGHTPVPCTLCNNELKWALLAKIADEKG 119 Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197 ++TGHY+R L G + M +D ++DQ++FL+ Q + + P+GD+ K Sbjct: 120 IYWVSTGHYVRKVLQGG-----KYYMAPAVDKDKDQTFFLWGLKQDIMRRMLLPMGDITK 174 Query: 198 ESVRDLAREMGLD-IADKSDSQDICFVQQGKYFDVVKRINAGIALE--GDIVHLNGQILG 254 R A+ G +A K DS +CF Y ++R L G + NG+ LG Sbjct: 175 VEARAFAKARGFHEVATKKDSIGVCFCPL-DYRSFLQREADVRRLPGKGKFIDENGRFLG 233 Query: 255 RHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDG 314 H G YTIGQRRGLG+ M + +FV + + V++ P SL ++L+ N + D Sbjct: 234 WHEGYPFYTIGQRRGLGIQMNKAVFVKEISVEKNEVVLAPLSSLYKQEMWLKAWNLVEDS 293 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373 V + VKIR + V G ++V + +A+GQA FY D Sbjct: 294 ----RVFCAEEVIVKIRYRKQSNRCRVTLTAGGLLHVRLIEPLESIATGQAAAFYAKD-- 347 Query: 374 EARVLGGGII 383 +LGGGII Sbjct: 348 -GLLLGGGII 356 >gi|311254917|ref|XP_003126013.1| PREDICTED: mitochondrial tRNA-specific 2-thiouridylase 1-like [Sus scrofa] Length = 415 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 105/368 (28%), Positives = 165/368 (44%), Gaps = 36/368 (9%) Query: 42 RDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVI 101 GY V GV ++ ++ +G C A +D DA RVC +++ Y + + + V Sbjct: 20 ECGYQVTGVFMKNWD---LLDERGVCAADKDCEDAYRVCQILDLXFRQVSYVKEYWHDVF 76 Query: 102 VPFASSYAAGETPLPCVDCNRTVKFSDLLSVT-RQLGADVLATGHYIRSRLYVGDDGKRR 160 F + Y G TP P + CN+ +KFS + LGAD +ATGHY R+ + +++ Sbjct: 77 SDFLNEYEKGRTPNPDIICNKHIKFSCFFNYAVDNLGADAVATGHYARTSQEDEEVFRQK 136 Query: 161 RI------------------MCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202 I + + D +DQ++FL +Q L FPLG + K V+ Sbjct: 137 HIRRPEGLFRNRFEVRSAVKLLQAADSFKDQTFFLSQVSQDALRRTLFPLGGLTKAFVKK 196 Query: 203 LAREMGL-DIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHNGII 260 +A E L + K +S ICFV + + D + + G + + + ++LG H G Sbjct: 197 IAAENRLHHVLQKKESMGICFVGKRNFEDFILQYLQ--PRPGKFISIEDNKVLGTHKGWF 254 Query: 261 NYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFE 317 YT+GQR +G + EP +VV D S V+V P +L + ++W+ + Sbjct: 255 LYTLGQRAKIG-GLREPWYVVEKDSASGDVLVAPRTDHPALYRDLLRTGRVHWIAEEPPA 313 Query: 318 DAVVDG-FKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEA 375 V D C + R VP + N DG V+V ++ +A GQ VFY D Sbjct: 314 ALVRDKMMACHFRFRHQMALVPCVLTLNQDGTVWVTAVEAVRALALGQFAVFYKGD---- 369 Query: 376 RVLGGGII 383 LG G I Sbjct: 370 ECLGSGKI 377 >gi|304383810|ref|ZP_07366268.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella marshii DSM 16973] gi|304335066|gb|EFM01338.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella marshii DSM 16973] Length = 382 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 109/378 (28%), Positives = 167/378 (44%), Gaps = 25/378 (6%) Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73 + ++ + ++ V +SGGVDSSVV L R G +++ + C + +D+ Sbjct: 20 MKESLSNRKIAVLLSGGVDSSVVLHELSRAGLQPDCFYIKI---GPEEHEEWDCSSEEDL 76 Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133 A V V D + + N V AG TP P V CNR +KF Sbjct: 77 EMAGAVAARYGCRLEVVDCHQEYWNQVTKYTLEKVKAGFTPNPDVMCNRLIKFGAF-DEK 135 Query: 134 RQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLG 193 + +++ATGHY ++ + G + + D +DQ+ FL QL FP+G Sbjct: 136 KGHEYELIATGHYAQTEIIDG-----HKWLVTSPDPVKDQTDFLAQLYDWQLRKALFPIG 190 Query: 194 DMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQI 252 +KE VR +A L A + DSQ ICF+ + Y D ++R EG++V L G+ Sbjct: 191 HYRKEEVRQIAEREHLINAKRKDSQGICFLGKINYNDYIRRYLGE--NEGEVVELETGKC 248 Query: 253 LGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREIN 309 +G+H G+ +TIGQR GLG G P + V D + + V + + + Sbjct: 249 IGKHKGLWFHTIGQRHGLGFGGG-PWYAVRKDVKRNILYVSKGFEPATAYRRDFEIADFH 307 Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFY 368 +L V+ KIR + + +++ +G Y V EK GVA GQ CV Y Sbjct: 308 FLT------LPVEMEDVCFKIRHTPEYHKAKLEKRGNGAYTVHAEKPVQGVAPGQFCVVY 361 Query: 369 TSDSNEARVLGGGIISGS 386 D R G G I+ S Sbjct: 362 --DEQHHRCFGSGEIAWS 377 >gi|161353438|ref|NP_208127.2| tRNA-specific 2-thiouridylase MnmA [Helicobacter pylori 26695] gi|205371769|sp|O25893|MNMA_HELPY RecName: Full=tRNA-specific 2-thiouridylase mnmA Length = 342 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 119/368 (32%), Positives = 195/368 (52%), Gaps = 32/368 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ V +SGGVDSS A LK G++++G+ L+L+ S K + +A++ C Sbjct: 1 MKIAVLLSGGVDSSYSAYSLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + V D+++ F++AV F ++Y G+TP PC CN +KF L +LG + Sbjct: 53 EFLGIPLEVLDFQKDFKSAVYDEFINAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R + + + +D +DQSYFL+A + + L FPLGD+ K+ + Sbjct: 113 IATGHYARVKEI-----DKISYIQEALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167 Query: 201 RDLARE----MGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRH 256 + LA +G + +SQ+ICFV++ Y D +K+ + EG + +L G+++G H Sbjct: 168 KPLALNAMPFLG-TLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGEVIGTH 224 Query: 257 NGIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315 G + YTIG+R+G + EP FVV +D + ++VG +E L H + + + + D Sbjct: 225 KGYMQYTIGKRKGFSIKGALEPHFVVGIDAKKNELVVGKKEDLATHSLKAKNKSLMKDF- 283 Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEA 375 + F+K R P V D+ + V F++ GVA GQA V Y D Sbjct: 284 ------KDGEYFIKARYRSVPAKAHVSLKDEVIEVGFKEPFYGVAKGQALVVYKDDI--- 334 Query: 376 RVLGGGII 383 +LGGG+I Sbjct: 335 -LLGGGVI 341 >gi|109946881|ref|YP_664109.1| tRNA-specific 2-thiouridylase MnmA [Helicobacter acinonychis str. Sheeba] gi|122973425|sp|Q17Z16|MNMA_HELAH RecName: Full=tRNA-specific 2-thiouridylase mnmA gi|109714102|emb|CAJ99110.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Helicobacter acinonychis str. Sheeba] Length = 342 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 121/367 (32%), Positives = 195/367 (53%), Gaps = 30/367 (8%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80 M++ V +SGGVDSS A LK G++++G+ L+L+ S K + +A++ C Sbjct: 1 MKIAVLLSGGVDSSYSAYNLKEQGHELVGIYLKLHASEKKHDLY--------IKNAQKAC 52 Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140 + + + V D+++ F++ V F S+Y G+TP PC CN +KF L +LG + Sbjct: 53 EFLGIPLEVLDFQKDFKSVVYDAFISAYEEGQTPNPCALCNPLMKFGLALDHALKLGCEK 112 Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200 +ATGHY R ++ + + +D +DQSYFL+A + + L FPLGD+ K+ + Sbjct: 113 IATGHYARI-----EENDKVSYIREALDKTKDQSYFLYALEHEVIAKLVFPLGDLLKKDI 167 Query: 201 RDLAREM--GLDIAD-KSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257 + LA L + +SQ+ICFV++ Y D +K+ + EG + +L G+I+G H Sbjct: 168 KPLALNAMPFLGTLETYKESQEICFVEKS-YIDTLKKHVE-VEKEGVVKNLQGKIIGTHK 225 Query: 258 GIINYTIGQRRGLGV-AMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGLF 316 G + YTIG+R+G + EP FVV +D + ++VG +E L H + + + + D Sbjct: 226 GYMQYTIGKRKGFNIKGALEPHFVVRIDAKKNELVVGKKEDLATHFLKAKNKSLMKDF-- 283 Query: 317 EDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEAR 376 + F+K R P FV D+ + V+ ++ GVA GQA V Y D Sbjct: 284 -----KSGEYFIKARYRSMPTKAFVSLKDEMIEVELKEPFYGVAKGQALVVYKDDI---- 334 Query: 377 VLGGGII 383 VLGGG+I Sbjct: 335 VLGGGVI 341 >gi|282878172|ref|ZP_06286968.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella buccalis ATCC 35310] gi|281299590|gb|EFA91963.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Prevotella buccalis ATCC 35310] Length = 360 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 108/371 (29%), Positives = 165/371 (44%), Gaps = 25/371 (6%) Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78 KD R+ V +SGGVDSSVV L + G +++ + C + +D+ A Sbjct: 9 KDKRIAVLLSGGVDSSVVVHELAQMGLHPDCFYIKI---GPEEAEEWDCSSEEDLEMATA 65 Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138 V V D + + + V AG TP P V CNR +KF Sbjct: 66 VAAKYGCRLQVVDCHKEYWSEVTKYTMEKVKAGYTPNPDVMCNRLIKFGAF-DAKVGHQY 124 Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198 D++ATGHY ++ + G ++ + D +DQ+ FL QL FP+G +K Sbjct: 125 DLIATGHYAQTEVIDG-----KKWLVTSPDPVKDQTDFLAQIYDWQLKKALFPIGHYQKN 179 Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL-NGQILGRHN 257 VR++A L A + DSQ ICF+ Q Y + ++R GD++ L G+ +G H Sbjct: 180 EVREIAEREHLVNAKRRDSQGICFLGQIDYNEYLRRYLGE--KHGDVIELETGKKIGEHR 237 Query: 258 GIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESL---EVHRIYLREINWLGDG 314 G+ +TIGQR GLG G P FVV D ++ + V + + ++L + Sbjct: 238 GLWFHTIGQRHGLGFGGG-PWFVVKKDVQANVLYVSRGYDPKTAYKSDFKVHDFHFLTE- 295 Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVGVASGQACVFYTSDSN 373 +D KIR + + P +++ +G Y V + GVA GQ CV Y D Sbjct: 296 -----PLDMEHITFKIRHTPEYHPATIEKTAEGCYIVHAAQPIHGVAPGQFCVVY--DEQ 348 Query: 374 EARVLGGGIIS 384 R +G I+ Sbjct: 349 HHRCIGSAEIT 359 >gi|293189756|ref|ZP_06608472.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinomyces odontolyticus F0309] gi|292821346|gb|EFF80289.1| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Actinomyces odontolyticus F0309] Length = 363 Score = 353 bits (907), Expect = 3e-95, Method: Composition-based stats. Identities = 139/377 (36%), Positives = 192/377 (50%), Gaps = 23/377 (6%) Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR-KGSCCAGQDVYDARRV 79 MRV+ A+SGGVDS+V AA G+DV+GV + L + + + CC+ +D DA R Sbjct: 1 MRVLAALSGGV