RPSBLAST alignment for GI: 254780151 and conserved domain: cd01998
>gnl|CDD|30185 cd01998, tRNA_Me_trans, tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)- methyltransferase which is involved in the biosynthesis of the modified nucleoside 5-methylaminomethyl-2-thiouridine present in the wobble position of some tRNAs. This family of enzyme only presents in bacteria and eukaryote. The archaeal counterpart of this enzyme performs same function, but is completely unrelated in sequence.. Length = 349
Score = 409 bits (1054), Expect = e-115
Identities = 164/366 (44%), Positives = 228/366 (62%), Gaps = 21/366 (5%)
Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
+VVVAMSGGVDSSV AALLK GY+VIGV ++ ++ KG CC+ +D+ DARRV D
Sbjct: 1 KVVVAMSGGVDSSVAAALLKEQGYEVIGVFMKNWDE---DDGKGGCCSEEDLKDARRVAD 57
Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
+ + HYV ++E+ + V PF Y G TP P + CN+ +KF LL ++LGAD +
Sbjct: 58 QLGIPHYVVNFEKEYWEKVFEPFLEEYKKGRTPNPDILCNKEIKFGALLDYAKKLGADYI 117
Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
ATGHY R + +D R + R +D +DQSYFL +Q+QL L FPLGD+ K VR
Sbjct: 118 ATGHYAR----IEEDNNGRYRLLRGVDPNKDQSYFLSQLSQEQLSRLIFPLGDLTKPEVR 173
Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
++A+E+GL +A K DSQ ICF+ + + D +K G+IV ++G++LG H G+
Sbjct: 174 EIAKELGLPVAKKKDSQGICFIGERNFRDFLKEYLPE--KPGEIVDIDGKVLGEHKGLWF 231
Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFED 318
YTIGQR+GLG+A GEP +VV D ++ V+VGP E+L + ++ NW+GD
Sbjct: 232 YTIGQRKGLGIASGEPWYVVEKDPETNIVVVGPGSDHEALYSDGLIAKDFNWIGD----P 287
Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
++ +C VKIR Q PVP ++ DDG + V F++ + VA GQA VFY D RV
Sbjct: 288 PPLEPLECEVKIRYRQPPVPCTIEPLDDGRLEVIFDEPQRAVAPGQAAVFYDGD----RV 343
Query: 378 LGGGII 383
LGGGII
Sbjct: 344 LGGGII 349