RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780151|ref|YP_003064564.1| tRNA-specific 2-thiouridylase
MnmA [Candidatus Liberibacter asiaticus str. psy62]
(408 letters)
>gnl|CDD|30185 cd01998, tRNA_Me_trans, tRNA methyl transferase. This family
represents
tRNA(5-methylaminomethyl-2-thiouridine)-
methyltransferase which is involved in the biosynthesis
of the modified nucleoside
5-methylaminomethyl-2-thiouridine present in the wobble
position of some tRNAs. This family of enzyme only
presents in bacteria and eukaryote. The archaeal
counterpart of this enzyme performs same function, but
is completely unrelated in sequence..
Length = 349
Score = 409 bits (1054), Expect = e-115
Identities = 164/366 (44%), Positives = 228/366 (62%), Gaps = 21/366 (5%)
Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
+VVVAMSGGVDSSV AALLK GY+VIGV ++ ++ KG CC+ +D+ DARRV D
Sbjct: 1 KVVVAMSGGVDSSVAAALLKEQGYEVIGVFMKNWDE---DDGKGGCCSEEDLKDARRVAD 57
Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
+ + HYV ++E+ + V PF Y G TP P + CN+ +KF LL ++LGAD +
Sbjct: 58 QLGIPHYVVNFEKEYWEKVFEPFLEEYKKGRTPNPDILCNKEIKFGALLDYAKKLGADYI 117
Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
ATGHY R + +D R + R +D +DQSYFL +Q+QL L FPLGD+ K VR
Sbjct: 118 ATGHYAR----IEEDNNGRYRLLRGVDPNKDQSYFLSQLSQEQLSRLIFPLGDLTKPEVR 173
Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
++A+E+GL +A K DSQ ICF+ + + D +K G+IV ++G++LG H G+
Sbjct: 174 EIAKELGLPVAKKKDSQGICFIGERNFRDFLKEYLPE--KPGEIVDIDGKVLGEHKGLWF 231
Query: 262 YTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGP---RESLEVHRIYLREINWLGDGLFED 318
YTIGQR+GLG+A GEP +VV D ++ V+VGP E+L + ++ NW+GD
Sbjct: 232 YTIGQRKGLGIASGEPWYVVEKDPETNIVVVGPGSDHEALYSDGLIAKDFNWIGD----P 287
Query: 319 AVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSNEARV 377
++ +C VKIR Q PVP ++ DDG + V F++ + VA GQA VFY D RV
Sbjct: 288 PPLEPLECEVKIRYRQPPVPCTIEPLDDGRLEVIFDEPQRAVAPGQAAVFYDGD----RV 343
Query: 378 LGGGII 383
LGGGII
Sbjct: 344 LGGGII 349
>gnl|CDD|30830 COG0482, TrmU, Predicted tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, contains the PP-loop ATPase domain
[Translation, ribosomal structure and biogenesis].
Length = 356
Score = 391 bits (1007), Expect = e-109
Identities = 155/375 (41%), Positives = 220/375 (58%), Gaps = 24/375 (6%)
Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
K +V+V MSGGVDSSV A LLK GY+VIG+ ++ ++ G CC+ +D+ DA
Sbjct: 1 MKKKKVLVGMSGGVDSSVAAYLLKEQGYEVIGLFMKNWDEDG----GGGCCSEEDLRDAE 56
Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
RV D + + YV D+E+ F N V F + Y AG+TP PC+ CN+ +KF LL ++LG
Sbjct: 57 RVADQLGIPLYVVDFEKEFWNKVFEYFLAEYKAGKTPNPCILCNKEIKFKALLDYAKELG 116
Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
AD +ATGHY R R + + ++ R +DL +DQSYFL+A +Q+QL L FPLGD++K
Sbjct: 117 ADYIATGHYARQR-----EDEGIELLLRGVDLNKDQSYFLYALSQEQLERLLFPLGDLEK 171
Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
VR +A E GL A K DSQ ICF+ + K+ D + R A G+I+ +G++LG H+
Sbjct: 172 LEVRPIAAEKGLPTAKKKDSQGICFIGERKFKDFLGRYLP--AKPGEIIDKDGKVLGEHD 229
Query: 258 GIINYTIGQRRGLGVA--MGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGDGL 315
G++ YTIGQR+GLG+ GEP +VV D +R+ VG E+L + ++NWL D
Sbjct: 230 GLMYYTIGQRKGLGIGGLKGEPWYVVGKDLKKNRLYVGQGEALLSVGLIAEDLNWLDDAP 289
Query: 316 FEDAVVDGFKCFVKIRSSQDPVPVFVQR---NDDGVYVDFEKSEVGVASGQACVFYTSDS 372
E + +C K+R Q P V+ D + V F++ + V GQA V Y D
Sbjct: 290 PE----EPLECTAKVRYRQGDEPCKVKVLSDEDVELAVKFDEPQRAVTPGQAAVLYDGD- 344
Query: 373 NEARVLGGGIISGSK 387
LGGGII S+
Sbjct: 345 ---ICLGGGIIDTSE 356
>gnl|CDD|145938 pfam03054, tRNA_Me_trans, tRNA methyl transferase. This family
represents
tRNA(5-methylaminomethyl-2-thiouridine)-
methyltransferase which is involved in the biosynthesis
of the modified nucleoside
5-methylaminomethyl-2-thiouridine present in the wobble
position of some tRNAs.
Length = 354
Score = 380 bits (978), Expect = e-106
Identities = 160/370 (43%), Positives = 214/370 (57%), Gaps = 23/370 (6%)
Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
M+VVVAMSGGVDSSV A LLK GY+VIGV ++ ++ G CC+ +D+ DA+RVC
Sbjct: 1 MKVVVAMSGGVDSSVAAYLLKEQGYEVIGVFMKNWDEED-EFGHG-CCSEEDLADAQRVC 58
Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLGAD 139
+ + + YV ++E+ + V PF Y G TP P + CNR +KF LL + LGAD
Sbjct: 59 EQLGIPLYVVNFEKEYWEKVFEPFLDEYKNGRTPNPDILCNREIKFGALLDYAKQVLGAD 118
Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
LATGHY R ++ + + R D +DQSYFL +Q+QL L FPLGD+ KE
Sbjct: 119 YLATGHYARV---SLNENESE--LLRGKDKNKDQSYFLSGLSQEQLEKLLFPLGDLTKEE 173
Query: 200 VRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLN-GQILGRHNG 258
VR +A+E GL A K DSQ ICF+ + + D +K+ GDI+ ++ G++LG H G
Sbjct: 174 VRKIAKEAGLPTAKKKDSQGICFIGKRNFKDFLKKY--LPVKPGDIIDIDTGEVLGEHEG 231
Query: 259 IINYTIGQRRGLGVA-MGEPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREINWLGDG 314
I YTIGQR+GLG+ GEP +VV D + V VG E L + +++NWLG
Sbjct: 232 IWFYTIGQRKGLGIGGYGEPWYVVEKDPEKNTVYVGRGEDHEDLYSDGLRAKDLNWLGPE 291
Query: 315 LFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFYTSDSN 373
L V +C VK+R Q PVP V+ DD + V F++ V GQA VFY D
Sbjct: 292 LPTGEV---LRCTVKVRHRQPPVPCKVKLLDDNTIEVHFDEPVRAVTPGQAAVFYDGD-- 346
Query: 374 EARVLGGGII 383
R LGGGII
Sbjct: 347 --RCLGGGII 354
>gnl|CDD|38016 KOG2805, KOG2805, KOG2805, tRNA
(5-methylaminomethyl-2-thiouridylate)-methyltransferase
[Translation, ribosomal structure and biogenesis].
Length = 377
Score = 248 bits (635), Expect = 2e-66
Identities = 124/375 (33%), Positives = 183/375 (48%), Gaps = 25/375 (6%)
Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
RVVVAMSGGVDSSV A LL GY+V GV ++ ++S + C A +D DA+RVC
Sbjct: 7 RVVVAMSGGVDSSVAARLLAARGYNVTGVFMKNWDS--LDEFGSQCPAERDWKDAKRVCK 64
Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ-LGADV 140
+N+ + ++ + + N V PF Y G TP P + CN+ +KF + LG D
Sbjct: 65 QLNIPLHQVNFVKEYWNDVFSPFLEEYENGRTPNPDILCNKHIKFGKFFKHAIENLGYDW 124
Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
LATGHY R L D+ + D+ +DQ+YFL Q QL L FPLG + K V
Sbjct: 125 LATGHYARVVL--EDEDNAESHLLISKDMVKDQTYFLSTINQTQLKRLLFPLGCLTKSEV 182
Query: 201 RDLAREMGLDIADKSDSQDICFVQQGKYF-DVVKR-INAGIALEGDIVHL-NGQILGRHN 257
+ LA++ G A+K +SQ ICFV + K+F D ++R I + G I+ + +G ++G H
Sbjct: 183 KKLAKQAGFPNAEKPESQGICFVGKIKHFSDFLQRYIG---SSPGPILEIDSGSVVGNHR 239
Query: 258 GIINYTIGQRRGLGVAMGEPL---FVVYLDKNSSRVIVGP---RESLEVHRIYLREINWL 311
GI +YTIGQR G+ A+ FV D ++ + + L + WL
Sbjct: 240 GIHSYTIGQRCGISQALSLYGGPWFVSEKDTKNNVIYICRGYNNPDLYSRIFRIGSPKWL 299
Query: 312 GDGLFEDAV-VDGFKCFVKIRSSQDPVP-VFVQRNDDGVYVDFEKSEVGVASGQACVFYT 369
G + +C V+ + + D+ + + + + GQ C FY
Sbjct: 300 GT--KPQGIKTGALRCKVRSQHTPPLYSCKLEMSGDNLAVIHLDAKQRAITPGQFCAFYE 357
Query: 370 SDSNEARVLGGGIIS 384
D LG G+I
Sbjct: 358 DD----TCLGSGVIL 368
>gnl|CDD|73293 cd01995, ExsB, ExsB is a transcription regulator related protein.
It is a subfamily of a Adenosine nucleotide binding
superfamily of proteins. This protein family is
represented by a single member in nearly every completed
large (> 1000 genes) prokaryotic genome. In Rhizobium
meliloti, a species in which the exo genes make
succinoglycan, a symbiotically important
exopolysaccharide, exsB is located nearby and affects
succinoglycan levels, probably through polar effects on
exsA expression or the same polycistronic mRNA. In
Arthrobacter viscosus, the homologous gene is designated
ALU1 and is associated with an aluminum tolerance
phenotype. The function is unknown.
Length = 169
Score = 54.8 bits (132), Expect = 4e-08
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 16/88 (18%)
Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
+ VV +SGG+DS+ A K++GY+V ++ Y R A + + A+ + +
Sbjct: 1 KAVVLLSGGLDSTTCLAWAKKEGYEVHALSFD-YGQRHAKEEEA----------AKLIAE 49
Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYA 109
+ S YV RN + + A++YA
Sbjct: 50 KLGPSTYV-----PARNLIFLSIAAAYA 72
>gnl|CDD|30948 COG0603, COG0603, Predicted PP-loop superfamily ATPase [General
function prediction only].
Length = 222
Score = 52.9 bits (127), Expect = 1e-07
Identities = 44/203 (21%), Positives = 78/203 (38%), Gaps = 29/203 (14%)
Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
+ VV +SGG+DS+ A K++GY+V +T Y R + + A+
Sbjct: 1 MMKKAVVLLSGGLDSTTCLAWAKKEGYEVHALTFD-YGQRHRKELEA----------AKE 49
Query: 79 VCDTINVSHYVFDYEER--------FRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLL 130
+ + V H++ D + +++ VP +A E P V + S
Sbjct: 50 LAKKLGVPHHIIDVDLLGEIGGSALTDDSIDVP-KYEFAEEEIPATFVPARNLIFLSIAA 108
Query: 131 SVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRF 190
+ LGAD + G D CRP +E T++ + +
Sbjct: 109 AYAEALGADAIIIGVNEEDFSGYPD--------CRPEFIEALNEALNLG-TEKGVRIIHA 159
Query: 191 PLGDMKKESVRDLAREMGLDIAD 213
PL ++ K + LA E+G+ +
Sbjct: 160 PLMELTKAEIVKLADELGVPLEL 182
>gnl|CDD|30177 cd01990, Alpha_ANH_like_I, This is a subfamily of Adenine
nucleotide alpha hydrolases superfamily. Adenine
nucleotide alpha hydrolases superfamily includes N type
ATP PPases and ATP sulphurylases. It forms a
apha/beta/apha fold which binds to Adenosine group.
This subfamily of proteins probably binds ATP. This
domain is about 200 amino acids long with a strongly
conserved motif SGGKD at the N terminus..
Length = 202
Score = 50.2 bits (120), Expect = 1e-06
Identities = 43/195 (22%), Positives = 68/195 (34%), Gaps = 47/195 (24%)
Query: 23 VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
V VA SGGVDS+++ G V+ VT +++ +A+R+
Sbjct: 1 VAVAFSGGVDSTLLLKAAVDALGDRVLAVTA-----------TSPLFPRRELEEAKRLAK 49
Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
I + H V A P C C + + + L + +LG DV+
Sbjct: 50 EIGIRHEV---------IETDELDDPEFAKNPPDRCYLCKKAL-YEALKEIAEELGLDVV 99
Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD--MKKES 199
G L G + + +R PL + + K
Sbjct: 100 LDG-TNADDLGDYRPGLKAL----------------------RELGVRSPLAEAGLGKAE 136
Query: 200 VRDLAREMGLDIADK 214
+R+LARE+GL DK
Sbjct: 137 IRELARELGLPTWDK 151
>gnl|CDD|30166 cd00553, NAD_synthase, NAD+ synthase is a homodimer, which
catalyzes the final step in de novo nicotinamide adenine
dinucleotide (NAD+) biosynthesis, an amide transfer from
either ammonia or glutamine to nicotinic acid adenine
dinucleotide (NaAD). The conversion of NaAD to NAD+
occurs via an NAD-adenylate intermediate and requires
ATP and Mg2+. The intemediate is subsequently cleaved
into NAD+ and AMP. In many prokaryotes, such as E. coli
, NAD synthetase consists of a single domain and is
strictly ammonia dependent. In contrast, eukaryotes and
other prokaryotes have an additional N-terminal
amidohydrolase domain that prefer glutamine,
Interestingly, NAD+ synthases in these prokaryotes, can
also utilize ammonia as an amide source ..
Length = 248
Score = 49.0 bits (117), Expect = 2e-06
Identities = 49/219 (22%), Positives = 83/219 (37%), Gaps = 67/219 (30%)
Query: 23 VVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
VV+ +SGG+DS++VAAL R +V+ + + S + ++ DA+ +
Sbjct: 26 VVLGLSGGIDSALVAALAVRALGRENVLALFMPSRYSSEETRE-----------DAKELA 74
Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK--------FSDLLSV 132
+ + + H D I P ++ A + L ++
Sbjct: 75 EALGIEHVNID---------IDPAVEAFLALLGESGGSELEDLALGNIQARLRMVILYAL 125
Query: 133 TRQLGADVLATGHYIRSRLYVG-----DDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD 187
+LG VL TG+ +S L +G DG D
Sbjct: 126 ANKLGGLVLGTGN--KSELLLGYFTKYGDG---------------------------AAD 156
Query: 188 LRFPLGDMKKESVRDLAREMGL--DIADKSDSQDICFVQ 224
+ P+GD+ K VR+LAR +G+ I DK S ++ Q
Sbjct: 157 IN-PIGDLYKTQVRELARYLGVPESIIDKPPSAELWPGQ 194
>gnl|CDD|30180 cd01993, Alpha_ANH_like_II, This is a subfamily of Adenine
nucleotide alpha hydrolases superfamily.Adeninosine
nucleotide alpha hydrolases superfamily includes N type
ATP PPases and ATP sulphurylases. It forms a
apha/beta/apha fold which binds to Adenosine group.
This subfamily of proteins is predicted to bind ATP.
This domainhas a strongly conserved motif SGGKD at the
N terminus..
Length = 185
Score = 48.7 bits (116), Expect = 3e-06
Identities = 31/132 (23%), Positives = 57/132 (43%), Gaps = 26/132 (19%)
Query: 22 RVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQL--YNSRKASKRKGSCCAGQDV 73
R++VA+SGG DS V+ +LK+ G+++ +T+ R S
Sbjct: 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEGIPGYRDESLEV--------- 51
Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVT 133
R+ + + + + ++E + + + V PC C ++ L +
Sbjct: 52 --VERLAEELGIELEIVSFKEEYTDDIEV------KKRGGKSPCSLCGV-LRRGLLNKIA 102
Query: 134 RQLGADVLATGH 145
++LGAD LATGH
Sbjct: 103 KELGADKLATGH 114
>gnl|CDD|30386 COG0037, MesJ, Predicted ATPase of the PP-loop superfamily
implicated in cell cycle control [Cell division and
chromosome partitioning].
Length = 298
Score = 48.3 bits (114), Expect = 3e-06
Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 18/131 (13%)
Query: 15 DKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
+ N + +++VA+SGG DS + LLK I V + Q+
Sbjct: 16 EFNLIEYKILVAVSGGKDSLALLHLLKEL-GRRIEVEAVHVDHGLRGYSD------QEAE 68
Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
++C+ + + V + + C C R ++ L + +
Sbjct: 69 LVEKLCEKLGIPLIVERVTDDLGR----------ETLDGKSICAAC-RRLRRGLLYKIAK 117
Query: 135 QLGADVLATGH 145
+LGAD +ATGH
Sbjct: 118 ELGADKIATGH 128
>gnl|CDD|31794 COG1606, COG1606, ATP-utilizing enzymes of the PP-loop superfamily
[General function prediction only].
Length = 269
Score = 47.2 bits (112), Expect = 8e-06
Identities = 45/195 (23%), Positives = 71/195 (36%), Gaps = 46/195 (23%)
Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRV 79
+VVVA SGGVDSS++A L K G +V+ VT+ Y R+ + +A+ +
Sbjct: 19 KVVVAFSGGVDSSLLAKLAKEALGDNVVAVTVDSPYIPRREIE------------EAKNI 66
Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
I + H + C C R V +S L+ + G D
Sbjct: 67 AKEIGIRHEFIK----------MNRMDPEFKENPENRCYLCKRAV-YSTLVEEAEKRGYD 115
Query: 140 VLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKES 199
V+A G D R R + +S + K+
Sbjct: 116 VVADG-------TNASDLFDYRPGLRALKELGIRSPLAEF--------------GITKKE 154
Query: 200 VRDLAREMGLDIADK 214
+R++A+ +GL DK
Sbjct: 155 IREIAKSLGLPTWDK 169
>gnl|CDD|30520 COG0171, NadE, NAD synthase [Coenzyme metabolism].
Length = 268
Score = 45.3 bits (107), Expect = 3e-05
Identities = 45/217 (20%), Positives = 80/217 (36%), Gaps = 66/217 (30%)
Query: 22 RVVVAMSGGVDSSVVAALLKR------DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
VV+ +SGG+DS++V AL R +V+ V L + +A + D
Sbjct: 27 GVVLGLSGGIDSALVLALAVRALGKGDSKENVLAVRLPYGYTVQADEE-----------D 75
Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR- 134
A+ + + + + ++ I P ++ L + ++ + R
Sbjct: 76 AQDLAEALGI---------DYKEINIKPAVDAFLKKLLKLFLGIYLEDLALGNIKARLRM 126
Query: 135 --------QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQ--Q 184
+LG VL TG+ +S L +G YF T+
Sbjct: 127 VILYAIANKLGGLVLGTGN--KSELALG--------------------YF----TKYGDG 160
Query: 185 LCDLRFPLGDMKKESVRDLAREMGL--DIADKSDSQD 219
D+ P+ D+ K V LAR +G+ +I K + D
Sbjct: 161 AVDIN-PIADLYKTQVYALARHLGIPEEILKKPPTAD 196
>gnl|CDD|30486 COG0137, ArgG, Argininosuccinate synthase [Amino acid transport and
metabolism].
Length = 403
Score = 43.6 bits (103), Expect = 1e-04
Identities = 36/131 (27%), Positives = 52/131 (39%), Gaps = 17/131 (12%)
Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDG-YDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
K +VV+A SGG+D+SV LK G +VI VT + ++ DA
Sbjct: 2 MKVKKVVLAYSGGLDTSVAIKWLKEKGGAEVIAVTADVGQ-------------PEEDLDA 48
Query: 77 --RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVT 133
+ + YV D E F I P + A E P R + L+
Sbjct: 49 IREKALELGAEEAYVIDAREEFVEDYIFPAIKANALYEGVYPLGTALARPLIAKKLVEAA 108
Query: 134 RQLGADVLATG 144
++ GAD +A G
Sbjct: 109 KKEGADAVAHG 119
>gnl|CDD|73292 cd01986, Alpha_ANH_like, Adenine nucleotide alpha hydrolases
superfamily including N type ATP PPases and ATP
sulphurylases. The domain forms a apha/beta/apha fold
which binds to Adenosine group...
Length = 103
Score = 43.2 bits (101), Expect = 1e-04
Identities = 21/30 (70%), Positives = 24/30 (80%)
Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTL 52
V+VA SGG DSSV AALLK+ GY VI VT+
Sbjct: 1 VLVAFSGGKDSSVAAALLKKLGYQVIAVTV 30
>gnl|CDD|145596 pfam02540, NAD_synthase, NAD synthase. NAD synthase (EC:6.3.5.1)
is involved in the de novo synthesis of NAD and is
induced by stress factors such as heat shock and glucose
limitation.
Length = 243
Score = 40.4 bits (95), Expect = 8e-04
Identities = 45/192 (23%), Positives = 75/192 (39%), Gaps = 51/192 (26%)
Query: 23 VVVAMSGGVDSSVVAALLKRD-GYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
VV+ +SGG+DS+VVA L + G + V+ + + NS + +DV DA +
Sbjct: 21 VVLGLSGGIDSAVVAYLAVKALGKENVLALIMPSINSSE-----------EDVQDALALA 69
Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCN---RTVKFSDLLSVTRQLG 137
+ + +++ D + R A S N R + L + +
Sbjct: 70 ENLGINYKTIDIKPIVR-------AFSQLFQPAKDDLAKGNLKARI-RMIILYAHANKFN 121
Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL-CDLRFPLGDMK 196
VL TG+ +S L +G YF T CD+ P+GD+
Sbjct: 122 RLVLGTGN--KSELALG--------------------YF---TKYGDGACDIA-PIGDLY 155
Query: 197 KESVRDLAREMG 208
K V +LA+ +
Sbjct: 156 KTQVYELAKRLN 167
>gnl|CDD|30167 cd01712, ThiI, ThiI is required for thiazole synthesis in the
thiamine biosynthesis pathway. It belongs to the
Adenosine Nucleotide Hydrolysis suoerfamily and
predicted to bind to Adenosine nucleotide..
Length = 177
Score = 40.2 bits (94), Expect = 0.001
Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 17/125 (13%)
Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKRKGSCCAGQDVYDARRV 79
+ + +SGG+DS V A LL + G +V + + S KA ++ V D R
Sbjct: 1 KALALLSGGIDSPVAAWLLMKRGIEVDALHFNSGPFTSEKAREK---------VEDLARK 51
Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
+ H + F V Y G+ C+ C R + + + +LGAD
Sbjct: 52 LARYSPGHKLVVII--FTFFVQKEI---YGYGKEKYRCILCKRMM-YRIAEKLAEELGAD 105
Query: 140 VLATG 144
+ TG
Sbjct: 106 AIVTG 110
>gnl|CDD|30179 cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the
PP-loop faimly implicated in cell cycle control [Cell
division and chromosome partitioning]. This is a
subfamily of Adenine nucleotide alpha hydrolases
superfamily.Adeninosine nucleotide alpha hydrolases
superfamily includes N type ATP PPases and ATP
sulphurylases. It forms a apha/beta/apha fold which
binds to Adenosine group. This domain has a strongly
conserved motif SGGXD at the N terminus..
Length = 185
Score = 40.2 bits (94), Expect = 0.001
Identities = 41/210 (19%), Positives = 73/210 (34%), Gaps = 45/210 (21%)
Query: 22 RVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
+++VA+SGG DS + LL R G ++ V + + R S +
Sbjct: 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVD-HGLRPESDE--------EAAFVA 51
Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
+C + + Y+ P + AA R ++ + ++ G
Sbjct: 52 DLCAKLGIPLYILV-----VALAPKPGGNLEAAA----------REARYDFFAEIAKEHG 96
Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD-----LRFPL 192
ADVL T H+ DD + M L R A ++ +R PL
Sbjct: 97 ADVLLTAHH-------ADD----QAETVLMRLLRGSGLRGLAGMPARIPFGGGRLIR-PL 144
Query: 193 GDMKKESVRDLAREMGLDIADKSDSQDICF 222
+ + + RE GL + ++D +
Sbjct: 145 LGITRAEIEAYLRENGLPWWEDPSNEDPRY 174
>gnl|CDD|31556 COG1365, COG1365, Predicted ATPase (PP-loop superfamily) [General
function prediction only].
Length = 255
Score = 39.9 bits (93), Expect = 0.001
Identities = 25/127 (19%), Positives = 43/127 (33%), Gaps = 23/127 (18%)
Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
++ VA SGGVDSS A +L+ G+ V T L +
Sbjct: 58 IDKPKIAVAYSGGVDSSASAIILRWAGFTVDPGTAIL--------------PDHIRRNKE 103
Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
+ + + + G PC C+ ++ + ++ R+L
Sbjct: 104 ELETLLGEVPEYVEEDLED-------IEKGALNGRFH-PCGRCHSMIE-NAVMDKARELD 154
Query: 138 ADVLATG 144
DV+A G
Sbjct: 155 IDVVAFG 161
>gnl|CDD|30186 cd01999, Argininosuccinate_Synthase, Argininosuccinate synthase.
The Argininosuccinate synthase is a urea cycle enzyme
that catalyzes the penultimate step in arginine
biosynthesis: the ATP-dependent ligation of citrulline
to aspartate to form argininosuccinate, AMP and
pyrophosphate . In humans, a defect in the AS gene
causes citrullinemia, a genetic disease characterized by
severe vomiting spells and mental retardation. AS is a
homotetrameric enzyme of chains of about 400 amino-acid
residues. An arginine seems to be important for the
enzyme's catalytic mechanism. The sequences of AS from
various prokaryotes, archaebacteria and eukaryotes show
significant similarity.
Length = 385
Score = 39.7 bits (93), Expect = 0.001
Identities = 37/128 (28%), Positives = 52/128 (40%), Gaps = 21/128 (16%)
Query: 23 VVVAMSGGVDSSVVAALLKRDGY-DVIGVTLQLYNSRKASKRKGSCCAGQ--DVYDA--R 77
VV+A SGG+D+SV+ LK G +VI VT + GQ + +A
Sbjct: 1 VVLAYSGGLDTSVILKWLKEKGGYEVIAVTADV---------------GQPEEEIEAIEE 45
Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPC-VDCNRTVKFSDLLSVTRQL 136
+ H V D E F I P + A E P R + L+ V ++
Sbjct: 46 KALKLGAKKHVVVDLREEFVEDYIFPAIQANALYEGTYPLGTALARPLIAKALVEVAKEE 105
Query: 137 GADVLATG 144
GAD +A G
Sbjct: 106 GADAVAHG 113
>gnl|CDD|144363 pfam00733, Asn_synthase, Asparagine synthase. This family is
always found associated with pfam00310. Members of this
family catalyse the conversion of aspartate to
asparagine.
Length = 195
Score = 38.4 bits (90), Expect = 0.003
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 12/77 (15%)
Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
D+ V V +SGG+DSS++AAL R + + ++ + A V
Sbjct: 17 DVPVGVLLSGGLDSSLIAALAARQSSPPL----KTFSVGFEGSDYD------EAPYAELV 66
Query: 80 CDTINVSH--YVFDYEE 94
D + H + EE
Sbjct: 67 ADHLGTDHHEIIVTEEE 83
>gnl|CDD|30865 COG0519, GuaA, GMP synthase, PP-ATPase domain/subunit [Nucleotide
transport and metabolism].
Length = 315
Score = 38.6 bits (90), Expect = 0.003
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 19 KDMRVVVAMSGGVDSSVVAALLKR 42
D +V++A+SGGVDSSV A L R
Sbjct: 20 GDGKVILALSGGVDSSVAAVLAHR 43
>gnl|CDD|30184 cd01997, GMP_synthase_C, The C-terminal domain of GMP synthetase.
It contains two subdomains; the ATP pyrophosphatase
domain which closes to the N-termial and the
dimerization domain at C-terminal end. The ATP-PPase is
a twisted, five-stranded parallel beta-sheet sandwiched
between helical layers. It has a signature
nucleotide-binding motif, or P-loop, at the end of the
first-beta strand.The dimerization domain formed by the
C-terminal 115 amino acid for prokaryotic proteins. It
is adjacent to teh ATP-binding site of the ATP-PPase
subdomain. The largest difference between the primary
sequence of prokaryotic and eukaryotic GMP synthetase
map to the dimerization domain.Eukaryotic GMP
synthetase has several large insertions relative to
prokaryotes..
Length = 295
Score = 38.2 bits (89), Expect = 0.004
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 22 RVVVAMSGGVDSSVVAALLKR 42
+V++A+SGGVDS+V A LL +
Sbjct: 1 KVILALSGGVDSTVAAVLLHK 21
>gnl|CDD|30183 cd01996, Alpha_ANH_like_III, This is a subfamily of Adenine
nucleotide alpha hydrolases superfamily.Adeninosine
nucleotide alpha hydrolases superfamily includes N type
ATP PPases and ATP sulphurylases. It forms a
apha/beta/apha fold which binds to Adenosine group.
This subfamily of proteins is predicted to bind ATP.
This domain has a strongly conserved motif SGGKD at the
N terminus..
Length = 154
Score = 37.9 bits (88), Expect = 0.006
Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 22/126 (17%)
Query: 23 VVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQL-YNSRKASKRKGSCCAGQDVYDARRVC 80
++ +SGG DSS LLK G + + VT+ +NS +A K + +
Sbjct: 4 CIIGVSGGKDSSYALYLLKEKYGLNPLAVTVDNGFNSEEAVKN------------IKNLI 51
Query: 81 DT-INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGAD 139
+++ H V + EE + + PC C+ + F+ L V + G
Sbjct: 52 KKGLDLDHLVINPEEMKD------LQLARFKAKVGDPCWPCDTAI-FTSLYKVALKFGIP 104
Query: 140 VLATGH 145
++ TG
Sbjct: 105 LIITGE 110
>gnl|CDD|109807 pfam00764, Arginosuc_synth, Arginosuccinate synthase. This family
contains a PP-loop motif.
Length = 389
Score = 37.3 bits (87), Expect = 0.008
Identities = 36/126 (28%), Positives = 50/126 (39%), Gaps = 20/126 (15%)
Query: 24 VVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD----ARRV 79
V+A SGG+D+SV LK Y+VI V + + GQ D +
Sbjct: 1 VLAYSGGLDTSVCIPWLKEKYYEVIAVAVDV---------------GQGEEDLDEAREKA 45
Query: 80 CDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLGA 138
V HYV D +E F I P + A E P R + L+ ++ GA
Sbjct: 46 LKLGAVKHYVIDAKEEFVEDYIFPAIKANALYEGRYPLGTALARPLIAKKLVEAAKKEGA 105
Query: 139 DVLATG 144
D +A G
Sbjct: 106 DAVAHG 111
>gnl|CDD|36918 KOG1706, KOG1706, KOG1706, Argininosuccinate synthase [Amino acid
transport and metabolism].
Length = 412
Score = 37.3 bits (86), Expect = 0.008
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDV------IGVTLQLYNSRKASKRKGSC 67
VV+A SGG+D+S + A LK GY+V +G +RK + + G+
Sbjct: 7 SVVLAYSGGLDTSCILAWLKEQGYEVIAYLANVGQKEDFEEARKKALKSGAK 58
>gnl|CDD|30178 cd01991, Asn_Synthase_B_C, The C-terminal domain of Asparagine
Synthase B. This domain is always found associated
n-terminal amidotransferase domain. Family members that
contain this domain catalyse the conversion of
aspartate to asparagine. Asparagine synthetase B
catalyzes the assembly of asparagine from aspartate,
Mg(2+)ATP, and glutamine. The three-dimensional
architecture of the N-terminal domain of asparagine
synthetase B is similar to that observed for glutamine
phosphoribosylpyrophosphate amidotransferase while the
molecular motif of the C-domain is reminiscent to that
observed for GMP synthetase ..
Length = 269
Score = 37.0 bits (85), Expect = 0.010
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYD-----VIGVTLQLYNSRKASKR 63
D+ V V +SGG+DSS+VAAL R + IG + + R+ ++R
Sbjct: 15 DVPVGVLLSGGLDSSLVAALAARLLPEPVKTFSIGFGFEGSDEREYARR 63
>gnl|CDD|30716 COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino
acid transport and metabolism].
Length = 542
Score = 36.2 bits (83), Expect = 0.017
Identities = 35/153 (22%), Positives = 55/153 (35%), Gaps = 12/153 (7%)
Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
D+ V V +SGG+DSS++AA+ + T + S D AR V
Sbjct: 230 DVPVGVFLSGGLDSSLIAAIAAEELGKEGKTTF-------TVGFEDSDSP--DAKYARAV 280
Query: 80 CDTINVSHYVFDY-EERFRNAV--IVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
+ H+ E NA+ +V + +P +R + V
Sbjct: 281 AKFLGTPHHEIILTNEELLNALPEVVKALDTPGGMAASIPLYLLSRKARAEGEKVVLSGE 340
Query: 137 GADVLATGHYIRSRLYVGDDGKRRRIMCRPMDL 169
GAD L G+ SR G + + R + L
Sbjct: 341 GADELFGGYPPYSRFAPGPEELLNEALRRALAL 373
>gnl|CDD|32300 COG2117, COG2117, Predicted subunit of
tRNA(5-methylaminomethyl-2-thiouridylate)
methyltransferase, contains the PP-loop ATPase domain
[Translation, ribosomal structure and biogenesis].
Length = 198
Score = 33.3 bits (76), Expect = 0.11
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL 52
M V V SGG DSS+ A +L + GY+V VT+
Sbjct: 1 MDVYVLFSGGKDSSLAALILDKLGYEVELVTV 32
>gnl|CDD|36835 KOG1622, KOG1622, KOG1622, GMP synthase [Nucleotide transport and
metabolism].
Length = 552
Score = 33.4 bits (76), Expect = 0.12
Identities = 16/23 (69%), Positives = 21/23 (91%)
Query: 20 DMRVVVAMSGGVDSSVVAALLKR 42
D +V+VA+SGGVDS+V AALL+R
Sbjct: 230 DYKVLVAVSGGVDSTVCAALLRR 252
>gnl|CDD|35791 KOG0571, KOG0571, KOG0571, Asparagine synthase
(glutamine-hydrolyzing) [Amino acid transport and
metabolism].
Length = 543
Score = 32.6 bits (74), Expect = 0.18
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 13/75 (17%)
Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAG----QDVYD 75
D+ V +SGG+DSS+VA++ R+ + +R + S G D+
Sbjct: 225 DVPFGVLLSGGLDSSLVASIAARE-------LKKAQAAR--GSKLHSFAIGLEDSPDLLA 275
Query: 76 ARRVCDTINVSHYVF 90
AR+V D I H+
Sbjct: 276 ARKVADFIGTIHHEH 290
>gnl|CDD|35720 KOG0499, KOG0499, KOG0499, Cyclic nucleotide-gated cation channel
CNCG4 [Inorganic ion transport and metabolism, Signal
transduction mechanisms].
Length = 815
Score = 31.9 bits (72), Expect = 0.29
Identities = 35/163 (21%), Positives = 67/163 (41%), Gaps = 22/163 (13%)
Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDD--GKRRRIMCRPMDLERDQSYFLFATTQQ 183
FS L+ R + A +Y R+ + DD R ++++ + Q
Sbjct: 444 FSLLIGQMRDVIGAATANQNYFRACM---DDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQ 500
Query: 184 QLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQ------QGKYFDVVKRINA 237
++ D + + ++ L ++ LD+A + + VQ + D++ R+ +
Sbjct: 501 RMLD--------ESDLLKTLPTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRS 552
Query: 238 GIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFV 280
+ L GD V G+I G+ II + GQ + LG G + V
Sbjct: 553 VLYLPGDFVCKKGEI-GKEMYIIKH--GQVQVLGGPDGTKVLV 592
>gnl|CDD|144677 pfam01171, ATP_bind_3, PP-loop family. This family of proteins
belongs to the PP-loop superfamily.
Length = 182
Score = 32.2 bits (74), Expect = 0.30
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Query: 22 RVVVAMSGGVDSSVVAALLKRD----GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
+++VA+SGG DS + LLK+ G D+ + + R+ S R + +
Sbjct: 1 KILVAVSGGPDSMALLYLLKKLKPKFGIDLTAAHVD-HGLREESDR--------EAQFVK 51
Query: 78 RVCDTINVSHYV 89
+C +N+ V
Sbjct: 52 ELCRQLNIPLEV 63
>gnl|CDD|73291 cd01984, AANH_like, Adenine nucleotide alpha hydrolases
superfamily including N type ATP PPases, ATP
sulphurylases Universal Stress Response protein and
electron transfer flavoprotein (ETF). The domain forms
a apha/beta/apha fold which binds to Adenosine
nucleotide..
Length = 86
Score = 31.6 bits (71), Expect = 0.38
Identities = 12/20 (60%), Positives = 17/20 (85%)
Query: 23 VVVAMSGGVDSSVVAALLKR 42
++VA+SGG+DSSV+ L KR
Sbjct: 1 ILVALSGGLDSSVLLHLAKR 20
>gnl|CDD|35793 KOG0573, KOG0573, KOG0573, Asparagine synthase [Amino acid
transport and metabolism].
Length = 520
Score = 31.5 bits (71), Expect = 0.39
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 2 VVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKR 42
V+ RL + L + + V V SGGVDS+VVA L
Sbjct: 232 VLVIPPRLCANILLRCIHESNVCVLFSGGVDSTVVAVLAHY 272
>gnl|CDD|30649 COG0301, ThiI, Thiamine biosynthesis ATP pyrophosphatase [Coenzyme
metabolism].
Length = 383
Score = 31.4 bits (71), Expect = 0.51
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL--YNSRKASKR 63
+V++ +SGG+DS V A L+ + G +VI V Y S KA ++
Sbjct: 176 GKVLLLLSGGIDSPVAAWLMMKRGVEVIPVHFGNPPYTSEKAREK 220
>gnl|CDD|145613 pfam02568, ThiI, Thiamine biosynthesis protein (ThiI). ThiI is
required for thiazole synthesis, required for thiamine
biosynthesis.
Length = 197
Score = 30.4 bits (69), Expect = 0.93
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTL--QLYNSRKASKR 63
+V+ +SGG+DS V A L+ R G V+ + + S +A ++
Sbjct: 4 GKVLALLSGGIDSPVAAYLMMRRGCRVVALHFINEPGTSEEAIEK 48
>gnl|CDD|146048 pfam03223, V-ATPase_C, V-ATPase subunit C.
Length = 371
Score = 29.9 bits (68), Expect = 1.3
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 10/54 (18%)
Query: 363 QACVFYTSDSNEARV----------LGGGIISGSKRSDAVEESLLSVIGDEFPY 406
QA + E +V LGG S K D V++ L + +PY
Sbjct: 317 QAVLIQPDKKKEKKVRKILNQLFGYLGGNAASYDKDGDIVDDPSLLGDEEYYPY 370
>gnl|CDD|32285 COG2102, COG2102, Predicted ATPases of PP-loop superfamily
[General function prediction only].
Length = 223
Score = 29.8 bits (67), Expect = 1.4
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS 61
M+V+ SGG DS L +G++V+ + L + S
Sbjct: 1 MKVIALYSGGKDSFYALYLALEEGHEVVYL-LTVKPENGDS 40
>gnl|CDD|145983 pfam03126, Plus-3, Plus-3 domain. This domain is about 90 residues
in length and is often found associated with the
pfam02213 domain. The function of this domain is
uncertain. It is possible that this domain is involved
in DNA binding as it has three conserved positively
charged residues, hence this domain has been named the
plus-3 domain. It is found in yeast Rtf1 which may be a
transcription elongation factor.
Length = 105
Score = 29.5 bits (67), Expect = 1.6
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 299 EVHRIYLRE---INWLGDGLFEDAVVDGFKCFVKIRSSQDP 336
+++RI L L FE VV CFV++ +D
Sbjct: 2 DINRIRLSRSLLAKLLFYPGFESTVVG---CFVRVNIGKDD 39
>gnl|CDD|38535 KOG3325, KOG3325, KOG3325, Membrane coat complex Retromer, subunit
VPS29/PEP11 [Intracellular trafficking, secretion, and
vesicular transport].
Length = 183
Score = 29.1 bits (65), Expect = 2.4
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 65 GSCCAGQDVYD-ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRT 123
G+ C+ ++ YD + + +++ FD ++ P G+ + ++
Sbjct: 38 GNLCS-KESYDYLKTLSSDVHIVRGEFDENLKY------PENKVVTVGQFKIGLCHGHQV 90
Query: 124 VKFSDLLS---VTRQLGADVLATGH 145
+ + D S + RQL D+L TGH
Sbjct: 91 IPWGDPESLALLARQLDVDILLTGH 115
>gnl|CDD|31284 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis,
outer membrane].
Length = 329
Score = 28.2 bits (63), Expect = 4.1
Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 14/120 (11%)
Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
M+V+V G S L + G++V+ + + A + D+ D +
Sbjct: 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQFKFYEGDLLDRALLT 60
Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGET---PLPCVDCNRTVKFSDLLSVTRQLG 137
E + +V FA+S + GE+ PL D N V +L+ Q G
Sbjct: 61 AVF----------EENKIDAVVHFAASISVGESVQNPLKYYDNN-VVGTLNLIEAMLQTG 109
>gnl|CDD|164575 CHL00199, infC, translation initiation factor 3; Provisional.
Length = 182
Score = 27.9 bits (62), Expect = 5.9
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 191 PLGDMKKESVRDLAREMGLD---IADKSDSQDICFVQQGKY-FDVVKRINAG 238
LG E LA GLD +++KSD + GKY F KR
Sbjct: 36 QLGIFTSEQAIQLAANQGLDLVLVSEKSDPPVCRIIDYGKYKFTQEKRAKEA 87
>gnl|CDD|31306 COG1109, {ManB}, Phosphomannomutase [Carbohydrate transport and
metabolism].
Length = 464
Score = 27.7 bits (61), Expect = 6.2
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 9 LNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVI 48
+ +D+D + ++VVV + G V LLK G +V+
Sbjct: 167 KSLVDVDLKLRGLKVVVDCANGAAGLVAPRLLKELGAEVV 206
>gnl|CDD|36108 KOG0890, KOG0890, KOG0890, Protein kinase of the PI-3 kinase family
involved in mitotic growth, DNA repair and meiotic
recombination [Signal transduction mechanisms, Chromatin
structure and dynamics, Replication, recombination and
repair, Cell cycle control, cell division, chromosome
partitioning].
Length = 2382
Score = 27.3 bits (60), Expect = 8.5
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 153 VGDDGKRRRIMCRPM-DLERDQSYFLFATT 181
G DGK +C+P DL +D F
Sbjct: 2065 RGSDGKIYPFLCKPKDDLRKDARLMEFNEL 2094
>gnl|CDD|29942 cd00949, FBP_aldolase_I_bact, Fructose-1.6-bisphosphate aldolase
found in gram +/- bacteria. The enzyme catalyzes the
cleavage of fructose 1,6-bisphosphate to glyceraldehyde
3-phosphate and dihydroxyacetone phosphate (DHAP). The
enzyme is member of the class I aldolase family, which
utilizes covalent catalysis through a Schiff base formed
between a lysine residue of the enzyme and ketose
substrates..
Length = 292
Score = 27.2 bits (60), Expect = 9.2
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRD 43
+L ++PK +RVV A+SGG LL ++
Sbjct: 223 ELIEHPKVLRVV-ALSGGYSREEANELLAKN 252
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.322 0.139 0.407
Gapped
Lambda K H
0.267 0.0862 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,871,769
Number of extensions: 262547
Number of successful extensions: 726
Number of sequences better than 10.0: 1
Number of HSP's gapped: 693
Number of HSP's successfully gapped: 60
Length of query: 408
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 312
Effective length of database: 4,189,273
Effective search space: 1307053176
Effective search space used: 1307053176
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.3 bits)