RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780151|ref|YP_003064564.1| tRNA-specific 2-thiouridylase
MnmA [Candidatus Liberibacter asiaticus str. psy62]
(408 letters)
>2hma_A Probable tRNA (5-methylaminomethyl-2-
thiouridylate)-methyltransferase; alpha-beta, beta
barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A
{Streptococcus pneumoniae}
Length = 376
Score = 292 bits (749), Expect = 8e-80
Identities = 134/385 (34%), Positives = 190/385 (49%), Gaps = 25/385 (6%)
Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
+ RVVV MSGGVDSSV A LLK GYDVIG+ ++ ++ + G C A +D D
Sbjct: 5 SDNSKTRVVVGMSGGVDSSVTALLLKEQGYDVIGIFMKNWDD---TDENGVCTATEDYKD 61
Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
V D I + +Y ++E+ + + V F + Y AG TP P V CN+ +KF L
Sbjct: 62 VVAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAIT 121
Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
LGAD +ATGHY R V D M R +D +DQ+YFL +Q+QL FPLG +
Sbjct: 122 LGADYVATGHYAR----VARDEDGTVHMLRGVDNGKDQTYFLSQLSQEQLQKTMFPLGHL 177
Query: 196 KKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGR 255
+K VR LA E GL A K DS ICF+ + + + + A G ++ ++G+ +G
Sbjct: 178 EKPEVRRLAEEAGLSTAKKKDSTGICFIGEKNFKNFLSNYL--PAQPGRMMTVDGRDMGE 235
Query: 256 HNGIINYTIGQRRGLGVAM-----GEPLFVVYLDKNSSRVIVGPRESLEVHRIYLRE--- 307
H G++ YTIGQR GLG+ P FVV D + + + VG + E
Sbjct: 236 HAGLMYYTIGQRGGLGIGGQHGGDNAPWFVVGKDLSKNILYVGQGFYHDSLMSTSLEASQ 295
Query: 308 INWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVF 367
+++ + E +C K R Q V V + V F + + + GQA VF
Sbjct: 296 VHFTREMPEE----FTLECTAKFRYRQPDSKVTVHVKGEKTEVIFAEPQRAITPGQAVVF 351
Query: 368 YTSDSNEARVLGGGIISGSKRSDAV 392
Y + LGGG+I + R V
Sbjct: 352 YDGE----ECLGGGLIDNAYRDGQV 372
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex,
transferase/RNA complex; 3.10A {Escherichia coli} PDB:
2det_A 2deu_A*
Length = 380
Score = 292 bits (749), Expect = 8e-80
Identities = 123/375 (32%), Positives = 195/375 (52%), Gaps = 28/375 (7%)
Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
+V+V MSGGVDSSV A LL++ GY V G+ ++ + C A D+ DA+
Sbjct: 16 TAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGE---EYCTAAADLADAQA 72
Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS-VTRQLG 137
VCD + + + ++ + + V F + Y AG TP P + CN+ +KF L LG
Sbjct: 73 VCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLG 132
Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
AD +ATGHY+R D + + R +D +DQSYFL+ + +Q+ FP+G+++K
Sbjct: 133 ADYIATGHYVRRA-----DVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEK 187
Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHN 257
VR +A ++GL A K DS ICF+ + K+ + + R A G I+ ++G +G H
Sbjct: 188 PQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYL--PAQPGKIITVDGDEIGEHQ 245
Query: 258 GIINYTIGQRRGLGVAMG-----EPLFVVYLDKNSSRVIVGPR---ESLEVHRIYLREIN 309
G++ +T+GQR+GLG+ EP +VV D ++ ++V L + ++++
Sbjct: 246 GLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQGHEHPRLMSVGLIAQQLH 305
Query: 310 WLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDG-VYVDFEKSEVGVASGQACVFY 368
W+ F +C VK R Q +P V+ DD + V F++ V GQ+ VFY
Sbjct: 306 WVDREPFT----GTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFY 361
Query: 369 TSDSNEARVLGGGII 383
+ LGGGII
Sbjct: 362 NGE----VCLGGGII 372
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA
methyltransferase, methanocaldococcus jannaschii DSM ,
PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Length = 203
Score = 120 bits (303), Expect = 4e-28
Identities = 38/241 (15%), Positives = 67/241 (27%), Gaps = 42/241 (17%)
Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
K M V V SGG DSS+ A +LK+ GY+ +T+ A
Sbjct: 5 KLMDVHVLFSGGKDSSLSAVILKKLGYNPHLITINFGVIPSYK-------------LAEE 51
Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
+ H V + + + P P + L
Sbjct: 52 TAKILGFKHKVITLDRKIVEKAADMI----IEHKYPGPAIQYVHKTVLEIL-----ADEY 102
Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
+LA G R + QS ++ PL +
Sbjct: 103 SILADGTR-------------RDDRVPKLSYSEIQSL-----EMRKNIQYITPLMGFGYK 144
Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNG 258
++R LA E + + + + + ++K + H +++G
Sbjct: 145 TLRHLASEF-FILEEIKSGTKLSSDYEAEIRHILKERGESP-EKYFPEHKQTRVVGLKKE 202
Query: 259 I 259
I
Sbjct: 203 I 203
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding
protein, RNA binding protein, tRNA modification,
4-thiouridine synthase; HET: AMP; 2.5A {Bacillus
anthracis} SCOP: c.26.2.6 d.308.1.1
Length = 413
Score = 116 bits (292), Expect = 8e-27
Identities = 31/257 (12%), Positives = 63/257 (24%), Gaps = 42/257 (16%)
Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
+V+V +SGG+DS V A L + G V V + + +
Sbjct: 189 KVMVLLSGGIDSPVAAYLTMKRGVSVEAVHFHS----------PPFTSERAKQKVIDLAQ 238
Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
+ V + + R + + + A +
Sbjct: 239 ELTKYCKRVTLHLVPFTEVQKTINKEIPSSYSMTVM----RRMMMRITERIAEERNALAI 294
Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
TG + + + + + PL M K +
Sbjct: 295 TTGESLG-------------------QVASQTLDSMHTINEVTNYPVIRPLITMDKLEII 335
Query: 202 DLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHLNGQILGRHNGIIN 261
+A E+G +D C V + E +I+
Sbjct: 336 KIAEEIGTYDISIRPYEDCCTVFTPASPATKPKREKANRFEAKY---------DFTPLID 386
Query: 262 YTIGQRRGLGVAMGEPL 278
+ + + + E +
Sbjct: 387 EAVANKETMVLQTVEVV 403
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA
modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Length = 219
Score = 93.6 bits (232), Expect = 6e-20
Identities = 40/203 (19%), Positives = 67/203 (33%), Gaps = 25/203 (12%)
Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
K + +V SGG DS+ ++ +V VT YN R Q+V A+
Sbjct: 2 KKEKAIVVFSGGQDSTTCLLWALKEFEEVETVTFH-YNQR----------HSQEVEVAKS 50
Query: 79 VCDTINVSHYVFD----YEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
+ + + V +++ D + GE P V V S +
Sbjct: 51 IAEKLGVKNHLLDMSLLNQLAPNALTRNDIEIEVKDGELPSTFVPGRNLVFLSFASILAY 110
Query: 135 QLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGD 194
Q+GA + TG D CR + ++ + PL
Sbjct: 111 QIGARHIITGVC-------ETDFSGYP-DCRDEFV--KSCNVTVNLAMEKPFVIHTPLMW 160
Query: 195 MKKESVRDLAREMGLDIADKSDS 217
+ K LA E+G K+++
Sbjct: 161 LNKAETWKLADELGALDFVKNNT 183
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical
protein, structural genomics; 2.40A {Pectobacterium
atrosepticum SCRI1043} SCOP: c.26.2.1
Length = 232
Score = 58.9 bits (141), Expect = 2e-09
Identities = 29/192 (15%), Positives = 50/192 (26%), Gaps = 10/192 (5%)
Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
R VV SGG DS+ +D DV +T Y R + +
Sbjct: 4 RAVVVFSGGQDSTTCLIQALQDYDDVHCITFD-YGQR--HRAEIEVAQELSQKLGAAAHK 60
Query: 82 TINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVL 141
++V I A P V + + Q+GA+ +
Sbjct: 61 VLDVGLLNELATSSLTRDSIPVPDYDANAQGIPNTFVPGRNILFLTLASIYAYQVGAEAV 120
Query: 142 ATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVR 201
TG D +Q+ L + L + ++
Sbjct: 121 ITGVCETDFSGYPDCRDEFVKAL-------NQAIVLGIARDIRFETPLMWLNKAETWALA 173
Query: 202 DLAREMGLDIAD 213
D +++
Sbjct: 174 DYYQQLDTVRYH 185
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B;
structural genomics, NPPSFA; 1.43A {Pyrococcus
horikoshii OT3} PDB: 2z0c_A 3a4i_A
Length = 308
Score = 58.6 bits (141), Expect = 3e-09
Identities = 46/263 (17%), Positives = 75/263 (28%), Gaps = 34/263 (12%)
Query: 19 KDMRVVVAMSGGVDSSVVAALLKR-DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
D + ++A+SGGVDSS A L + G + V + RK V R
Sbjct: 19 GDSKAIIALSGGVDSSTAAVLAHKAIGDRLHAVFVNTGFLRKGEPE-------FVVKTFR 71
Query: 78 RVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLG 137
D V P G V +++G
Sbjct: 72 DEFGMNLHYVDAQDRFFSALKGVTDPEEKRKIIGRVF-----------IEVFEEVAKKIG 120
Query: 138 ADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKK 197
A+ L G + + + L ++ L PL D+ K
Sbjct: 121 AEYLIQGTIAPD---WIESQGKIKSHHNVGGL-----------PEKLNLKLIEPLRDLYK 166
Query: 198 ESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGD-IVHLNGQILGRH 256
+ VR+LA+ +GL + + V I E + IV + G
Sbjct: 167 DEVRELAKFLGLPEKIYNRMPFPGPGLAVRVIGEVTPEKIRIVREANAIVEEEVERAGLR 226
Query: 257 NGIINYTIGQRRGLGVAMGEPLF 279
+ + +GV +
Sbjct: 227 PWQAFAVLLGVKTVGVQGDIRAY 249
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCSG,
protein structure initiative, PSI, joint center for
structural genomics; 1.65A {Thermotoga maritima} SCOP:
c.26.2.1 d.210.1.1
Length = 421
Score = 57.2 bits (138), Expect = 6e-09
Identities = 30/128 (23%), Positives = 43/128 (33%), Gaps = 19/128 (14%)
Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ--DVYDARRV 79
+VV+A SGG+D+SV+ L G+DVI + GQ D +
Sbjct: 16 KVVLAYSGGLDTSVILKWLCEKGFDVIAYVANV---------------GQKDDFVAIKEK 60
Query: 80 CDTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQLG 137
S YV D F I A E R + + + + G
Sbjct: 61 ALKTGASKVYVEDLRREFVTDYIFTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEG 120
Query: 138 ADVLATGH 145
A +A G
Sbjct: 121 AQYVAHGA 128
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 57.3 bits (138), Expect = 6e-09
Identities = 51/311 (16%), Positives = 79/311 (25%), Gaps = 136/311 (43%)
Query: 1 MV-VSEATR--LNSLDLDK-N---PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ 53
M+ +S T+ + ++K N P +V +++ G + VV+ G
Sbjct: 338 MLSISNLTQEQVQDY-VNKTNSHLPAGKQVEISLVNGAKNLVVS-----------GPPQS 385
Query: 54 LY--NSRKASKRKGSCCAGQDV----YDARRVCDTINVSHYVFDYEERFRNAVIVPFASS 107
LY N RK +G D + R++ S+ RF V PF S
Sbjct: 386 LYGLNLT---LRKAKAPSGLDQSRIPFSERKL----KFSN-------RFL-PVASPFHSH 430
Query: 108 YAAGETPLPCVD-CNRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRP 166
+ L D V F+ + + V T DG
Sbjct: 431 LLVPASDLINKDLVKNNVSFN-----AKDIQIPVYDT-----------FDGS-------- 466
Query: 167 MDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQG 226
DLR + + I
Sbjct: 467 --------------------DLR----VLSGSISERIVD-C------------II----- 484
Query: 227 KYFDVVKRINAGIALEGDIVHLNGQIL----GRHNGIINYTIGQRRGLGVAMGEPLFVVY 282
+ + H IL G +G+ T + G GV
Sbjct: 485 -----RLPVKWETTTQFKATH----ILDFGPGGASGLGVLTHRNKDGTGV---------- 525
Query: 283 LDKNSSRVIVG 293
RVIV
Sbjct: 526 ------RVIVA 530
Score = 48.0 bits (114), Expect = 4e-06
Identities = 40/229 (17%), Positives = 66/229 (28%), Gaps = 112/229 (48%)
Query: 199 SVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIALEGDIVHL--NGQI-LGR 255
S+ +L +E VQ Y + N+ HL Q+ +
Sbjct: 340 SISNLTQE---------------QVQ--DYVNKT---NS---------HLPAGKQVEISL 370
Query: 256 HNGIINYTIGQRRGLGVAMGEPL----FVVYLDK-------NSSRVIVGP---RESLEVH 301
NG + L V+ G P + L K + SR+ P R+ +
Sbjct: 371 VNG--------AKNLVVS-GPPQSLYGLNLTLRKAKAPSGLDQSRI---PFSERKLKFSN 418
Query: 302 R---I-------YLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVD 351
R + L + D + +D V + V + +PV+ D
Sbjct: 419 RFLPVASPFHSHLLVPAS---DLINKDLVKNN----VSFNAKDIQIPVY----------D 461
Query: 352 FEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVI 400
T D ++ RVL G I E ++ I
Sbjct: 462 -----------------TFDGSDLRVLSGSIS----------ERIVDCI 483
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET:
DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB:
1xnh_A
Length = 268
Score = 54.5 bits (130), Expect = 4e-08
Identities = 30/208 (14%), Positives = 59/208 (28%), Gaps = 45/208 (21%)
Query: 22 RVVVAMSGGVDSSVVAALLKRDGYD-VIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
+VV +SGG+DS+VV L ++ + + + S +K +
Sbjct: 27 KVVYGLSGGLDSAVVGVLCQKVFKENAHALLMPSSVSMPENKTDALNLCEKFSIPYTEYS 86
Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
+ + +++ A
Sbjct: 87 IAPYDAIFSSHFKDASLTRKGNFCA----------------------------------- 111
Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
R R+ D + + + + T L P+G++ K V
Sbjct: 112 -------RLRMAFLYDYSLKSDSLVIGTSNKSERMLGYGTLFGDLACAINPIGELFKTEV 164
Query: 201 RDLAREMGL--DIADKSDSQDICFVQQG 226
+LAR + + I +K S D+ Q
Sbjct: 165 YELARRLNIPKKILNKPPSADLFVGQSD 192
>1kor_A Argininosuccinate synthetase; ligase, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; HET: ANP ARG; 1.95A {Thermus thermophilus}
SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A
1kh2_A* 1kh3_A* 1j20_A*
Length = 400
Score = 53.3 bits (128), Expect = 9e-08
Identities = 34/150 (22%), Positives = 56/150 (37%), Gaps = 25/150 (16%)
Query: 21 MRVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQ--DVYDAR 77
M++V+A SGG+D+S++ LK +VI T + GQ +V +AR
Sbjct: 1 MKIVLAYSGGLDTSIILKWLKETYRAEVIAFTADI---------------GQGEEVEEAR 45
Query: 78 RVCDTINVS-HYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC-NRTVKFSDLLSVTRQ 135
S D +E F + P + A E R + L+ + +
Sbjct: 46 EKALRTGASKAIALDLKEEFVRDFVFPMMRAGAVYEGYYLLGTSIARPLIAKHLVRIAEE 105
Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCR 165
GA+ +A G G+D R +
Sbjct: 106 EGAEAIAHG-----ATGKGNDQVRFELTAY 130
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for
structural genomics of infec diseases, NADE, CSGI; 2.74A
{Campylobacter jejuni}
Length = 249
Score = 52.4 bits (125), Expect = 2e-07
Identities = 36/201 (17%), Positives = 72/201 (35%), Gaps = 43/201 (21%)
Query: 16 KNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
KN + VV+ +SGG+DS++VA L KR + + L ++ D
Sbjct: 22 KNSQSQGVVLGLSGGIDSALVATLCKRALKENVFALLMPTQ----------ISNKANLED 71
Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
A R+C +N+ + + + + + ++ + + ++ S L +
Sbjct: 72 ALRLCADLNLEYKIIEIQSILDAFIKQSENTTLVSLG------NFAARIRMSLLYDYSAL 125
Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
+ V+ T +S L +G + T L P+G +
Sbjct: 126 KNSLVIGTS--NKSELLLG-----------------------YGTIYGDLACAFNPIGSL 160
Query: 196 KKESVRDLAREMGL--DIADK 214
K + LA+ + L + K
Sbjct: 161 YKSEIYALAKYLNLHENFIKK 181
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATP, ATPase,
PP-type, PSI, protein structure initiative; 2.65A
{Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Length = 433
Score = 50.3 bits (119), Expect = 8e-07
Identities = 33/220 (15%), Positives = 66/220 (30%), Gaps = 38/220 (17%)
Query: 11 SLDLDKN-PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQL----YNSRKASKRKG 65
+L L++ +++VA SGG+DS+V+ L + + GV L+ + +
Sbjct: 3 TLTLNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSANAD--- 59
Query: 66 SCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
V VC V V + I + +
Sbjct: 60 -----AWVTHCENVCQQWQVPLVVERVQLAQEGLGI------------------EAQARQ 96
Query: 126 FSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQL 185
L +VL T ++ + +R + + ++
Sbjct: 97 ARYQAFARTLLPGEVLVTAQHLDDQCETFLLALKRGSGPAGL-------SAMAEVSEFAG 149
Query: 186 CDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQ 225
L PL + + AR+ L + +QD + +
Sbjct: 150 TRLIRPLLARTRGELVQWARQYDLRWIEDESNQDDSYDRN 189
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate,
citrulline, structural genomics, structural genomics
consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Length = 413
Score = 46.5 bits (110), Expect = 1e-05
Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 21/126 (16%)
Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ--DVYDAR-R 78
VV+A SGG+D+S + LK GYDVI + GQ D +AR +
Sbjct: 7 SVVLAYSGGLDTSCILVWLKEQGYDVIAYLANI---------------GQKEDFEEARKK 51
Query: 79 VCDTINVSHYVFDYEERFRNAVIVP--FASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136
++ D F I P +S+ L R + + ++
Sbjct: 52 ALKLGAKKVFIEDVSREFVEEFIWPAIQSSALYEDRYLLGTSLA-RPCIARKQVEIAQRE 110
Query: 137 GADVLA 142
GA ++
Sbjct: 111 GAKYVS 116
>1k92_A Argininosuccinate synthase, argininosuccinate; N-type ATP
pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP:
c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Length = 455
Score = 44.9 bits (106), Expect = 3e-05
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVT 51
L P R+ +A SGG+D+S +++ G T
Sbjct: 4 LKHLPVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYT 41
>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide
alpha hydrolase-like, ATP- binding, ligase,
nucleotide-binding; HET: AMP; 1.85A {Francisella
tularensis subsp}
Length = 249
Score = 44.2 bits (103), Expect = 6e-05
Identities = 34/204 (16%), Positives = 60/204 (29%), Gaps = 37/204 (18%)
Query: 23 VVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCDT 82
V+ +SGG+DS+V A+L + G A D + D
Sbjct: 32 FVIGLSGGIDSAVAASLAVKTGLPTT--------------------ALILPSDNNQHQDM 71
Query: 83 INVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADVLA 142
+ + I P ++ A + NR V+
Sbjct: 72 QDALELIEMLNIEHYTISIQPAYEAFLASTQSFTNLQNNRQ---------------LVIK 116
Query: 143 TGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESVRD 202
R R+ ++ + Y + T PL ++KK V +
Sbjct: 117 GNAQARLRMMYLYAYAQQYNRIVIGTDNACEWYMGYFTKFGDGAADILPLVNLKKSQVFE 176
Query: 203 LAREMGLD--IADKSDSQDICFVQ 224
L + + + I DK+ S + Q
Sbjct: 177 LGKYLDVPKNILDKAPSAGLWQGQ 200
>1kqp_A NAD+ synthase;, NH(3)-dependent NAD(+) synthetase; ligase,
amidotransferase, ATP pyrophosphatase, NAD-adenylate;
HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB:
1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A
2pza_A* 2pz8_A
Length = 271
Score = 41.6 bits (97), Expect = 3e-04
Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 43/193 (22%)
Query: 23 VVVAMSGGVDSSVVAAL-------LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
V+ +SGG DS++ L ++ +G D + ++L + +++ +
Sbjct: 41 FVLGISGGQDSTLAGRLAQLAVESIREEGGDAQFIAVRLPHG---TQQDEDDAQLALKFI 97
Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
++ V + ++++ + + G R + ++ Q
Sbjct: 98 KPDKSWKFDIKSTVSAFSDQYQQETGDQL-TDFNKGN----VKARTRMIA---QYAIGGQ 149
Query: 136 LGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDM 195
G VL T H + G F T PL +
Sbjct: 150 EGLLVLGTDH--AAEAVTG-----------------------FFTKYGDGGADLLPLTGL 184
Query: 196 KKESVRDLAREMG 208
K R L +E+G
Sbjct: 185 TKRQGRTLLKELG 197
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA
complex; 3.65A {Geobacillus kaustophilus}
Length = 464
Score = 41.2 bits (95), Expect = 4e-04
Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 12/80 (15%)
Query: 18 PKDMRVVVAMSGGVDSSVVAALL----KRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
+ V+V +SGG DS + + VI + + R + +++
Sbjct: 16 SEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVD-HMFRGRE-------SEEEM 67
Query: 74 YDARRVCDTINVSHYVFDYE 93
+R C + +
Sbjct: 68 EFVKRFCVERRILCETAQID 87
>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics,
protein structure initiative, P nysgrc; 2.35A
{Streptomyces avermitilis}
Length = 590
Score = 40.1 bits (93), Expect = 9e-04
Identities = 41/202 (20%), Positives = 70/202 (34%), Gaps = 45/202 (22%)
Query: 21 MRVVVAMSGGVDSSVVAALLKR--DGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
V++ +SGG+DS++VAA+ +V GV++ S SK DA
Sbjct: 327 RSVLIGLSGGIDSALVAAIACDALGAQNVYGVSMPSKYSSDHSKG-----------DAAE 375
Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGA 138
+ ++ E F + + A R L++++ Q G
Sbjct: 376 LARRTGLNFRTVSIEPMFDAYMASLGLTGLAEENL----QSRLRGT---TLMAISNQEGH 428
Query: 139 DVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKE 198
VLA G+ +S L VG ++T P+ D+ K
Sbjct: 429 IVLAPGN--KSELAVG-----------------------YSTLYGDSVGAYGPIKDVYKT 463
Query: 199 SVRDLAREMGLDIADKSDSQDI 220
S+ LA A++ + I
Sbjct: 464 SIFRLAEWRNRAAAERGQTPPI 485
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein
structure initiative; 2.20A {Burkholderia pseudomallei
1710B}
Length = 285
Score = 39.9 bits (92), Expect = 0.001
Identities = 25/177 (14%), Positives = 47/177 (26%), Gaps = 15/177 (8%)
Query: 23 VVVAMSGGVDSSVVAAL-------LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYD 75
V+ +SGG+DSS L L+ GYD V ++L + + D
Sbjct: 49 CVLGISGGIDSSTAGRLAQLAVERLRASGYDARFVAMRLPYGAQHDEADARRALAFVRAD 108
Query: 76 ARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQ 135
D + A+ + + + + +V
Sbjct: 109 ETLTVDVKPA-------ADAMLAALAAGGLAYLDHAQQDFVLGNIKARERMIAQYAVAGA 161
Query: 136 LGADVLATGHYIRSRL-YVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
V+ T H S + + G + L + + L +
Sbjct: 162 RNGVVIGTDHAAESVMGFFTKFGDGGADVLPLAGLTKRRVRALARMLGADEPLVLKT 218
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP;
1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A
1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Length = 275
Score = 39.5 bits (91), Expect = 0.001
Identities = 18/149 (12%), Positives = 35/149 (23%), Gaps = 25/149 (16%)
Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKR-----------DGYDVIGVTLQLYNSRKASK 62
L P +V+ +SGG DS++ L + + I V L
Sbjct: 34 LQTYPFIKSLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYGVQADEQD 93
Query: 63 RKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNR 122
+ + Q ++ E + +
Sbjct: 94 CQDAIAFIQPDRVLTVNIKGAVLASEQALREAGIEL--------------SDFVRGNEKA 139
Query: 123 TVKFSDLLSVTRQLGADVLATGHYIRSRL 151
+ S+ V+ T H +
Sbjct: 140 RERMKAQYSIAGMTSGVVVGTDHAAEAIT 168
>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.10A {Pyrococcus horikoshii OT3}
Length = 257
Score = 38.8 bits (89), Expect = 0.002
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 1/79 (1%)
Query: 22 RVVVAMSGGVDSSVVAALLKRD-GYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
VV+ +SGGVDS+ VA L + G + + + Y K + +
Sbjct: 24 GVVIGISGGVDSATVAYLATKALGKEKVLGLIMPYFENKDVEDAKLVAEKLGIGYKVINI 83
Query: 81 DTINVSHYVFDYEERFRNA 99
I S R
Sbjct: 84 KPIVDSFVENLELNLDRKG 102
>2d13_A Hypothetical protein PH1257; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
2.40A {Pyrococcus horikoshii} SCOP: c.26.2.1 PDB:
3h7e_A* 1ru8_A
Length = 227
Score = 38.4 bits (89), Expect = 0.003
Identities = 23/162 (14%), Positives = 46/162 (28%), Gaps = 14/162 (8%)
Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKAS----------KRKGSCCAG 70
V V SGG DS+ + G V + + + + + S + G
Sbjct: 5 ADVAVLYSGGKDSNYALYWALKSGLRVRYL-VSMVSENEESYMYHTPNVELTSLQARALG 63
Query: 71 QDVYDARRVCDTINVSHYVFDYEERFRNAVIV--PFASSYAAGETPLPCVDCNRTVKFSD 128
+ + + + E + IV AS Y + V
Sbjct: 64 IPIIKGFTKGEKEKEVEDLKNVLEGLKVDGIVAGALASRYQKERIENVARELGLKVYTPA 123
Query: 129 LLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLE 170
Q +++ G + + V G + R ++ +
Sbjct: 124 WEKDPYQYMLEIIKLGFKVV-FVAVSAYGLNESWLGRELNYK 164
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase,
structural genomics, translation, NPPSFA; 2.42A
{Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB:
2e21_A* 2e89_A*
Length = 317
Score = 36.5 bits (83), Expect = 0.011
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 19 KDMRVVVAMSGGVDSSVVAALLKR 42
+ RV++A SGGVDS V+ +L +
Sbjct: 23 GERRVLIAFSGGVDSVVLTDVLLK 46
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 35.1 bits (79), Expect = 0.028
Identities = 30/220 (13%), Positives = 60/220 (27%), Gaps = 5/220 (2%)
Query: 4 SEATRLNSLDLDKNPKDMRVVVA-MSGGVDSSVVAALLKRDGYDVI--GVTLQLYNSRKA 60
+E L+ L D ++ V + SG ++ +L++ + + +L +A
Sbjct: 2 AETEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEA 61
Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120
K + D + + R +
Sbjct: 62 YKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTTRGKAGAEGFVRVDRDYVLKSAELAKA 121
Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDL--ERDQSYFLF 178
F+ L S ++ L V + R + RP L +R +S
Sbjct: 122 GGCKHFNLLSSKGADKSSNFLYLQVKGEVEAKVEELKFDRYSVFRPGVLLCDRQESRPGE 181
Query: 179 ATTQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQ 218
++ L V + R M ++ D Q
Sbjct: 182 WLVRKFFGSLPDSWASGHSVPVVTVVRAMLNNVVRPRDKQ 221
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase,
N-type ATP pyrophosphatase, transferase (glutamine
amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli
K12} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Length = 525
Score = 33.8 bits (77), Expect = 0.074
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARR 78
D +V++ +SGGVDSSV A LL R IG L R + V
Sbjct: 226 GDDKVILGLSGGVDSSVTAMLLHR----AIGKNLTCVFVDNGLLRLNEA---EQVL--DM 276
Query: 79 VCDTINVSHYVFDYEERFRNAV 100
D ++ E+RF +A+
Sbjct: 277 FGDHFGLNIVHVPAEDRFLSAL 298
>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N
biosynthesis, methyltransferase, transferase; 2.3A
{Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A
1z75_A 1z7b_A 1z74_A
Length = 345
Score = 32.6 bits (72), Expect = 0.18
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 21 MRVVVAMSGG-VDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
MRV++ G + + + LL+ D Y+V G+ + +
Sbjct: 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPH 46
>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid
decarboxylase, structural genomics, structural genomics
consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo
sapiens} SCOP: c.2.1.2
Length = 343
Score = 32.0 bits (72), Expect = 0.23
Identities = 13/77 (16%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
++K+ K R+++ G S + L DG++V V + RK + ++
Sbjct: 23 MEKDRK--RILITGGAGFVGSHLTDKLMMDGHEVTVVD-NFFTGRKRNVEHWIGHENFEL 79
Query: 74 YDARRVCDTINVSHYVF 90
+ V ++
Sbjct: 80 INHDVVEPLYIEVDQIY 96
>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein
binding; HET: NAG NDG; 2.40A {Homo sapiens}
Length = 590
Score = 32.1 bits (72), Expect = 0.24
Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 12/89 (13%)
Query: 265 GQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRE---SLEVHRIYLREINWLGDGLFEDAVV 321
GQ R + EP V++ + SS V VG R + + + G + + +
Sbjct: 19 GQDR-VDFGQTEPHTVLFHEPGSSSVWVGGRGKVYLFDFPEGKNASVRTVNIGSTKGSCL 77
Query: 322 DGFKCFVKIRSSQDPVPVFVQRNDDGVYV 350
D C I ++R +G+
Sbjct: 78 DKRDCENYIT--------LLERRSEGLLA 98
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent
epimerase/dehydratase, LMR162, NESG, structural
genomics, PSI-2; 2.73A {Listeria monocytogenes}
Length = 221
Score = 31.7 bits (70), Expect = 0.28
Identities = 9/79 (11%), Positives = 21/79 (26%), Gaps = 2/79 (2%)
Query: 21 MRVVVA-MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
M++ + +G S ++ R G++V + + K +
Sbjct: 1 MKIGIIGATGRAGSRILEEAKNR-GHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSDL 59
Query: 80 CDTINVSHYVFDYEERFRN 98
D V +
Sbjct: 60 SDQNVVVDAYGISPDEAEK 78
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET:
NDP; 1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 31.6 bits (70), Expect = 0.29
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 8/73 (10%)
Query: 21 MRVVVA-MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
M++ V +G S++VA +R G++V+ V R K A +
Sbjct: 1 MKIAVLGATGRAGSAIVAEARRR-GHEVLAVV------RDPQKAADRLGATVATLVKEPL 53
Query: 80 CDTINVSHYVFDY 92
T V
Sbjct: 54 VLTEADLDSVDAV 66
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 31.7 bits (71), Expect = 0.30
Identities = 10/81 (12%), Positives = 28/81 (34%), Gaps = 5/81 (6%)
Query: 14 LDKNPKDMRVVV--AMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ 71
L + ++ V A +G + A+ G+D++ + ++ + + C
Sbjct: 7 LSRPGAHVKYAVLGA-TGLLGHHAARAIRAA-GHDLVLIHRPSSQIQRLAYLEPECRVA- 63
Query: 72 DVYDARRVCDTINVSHYVFDY 92
++ D + + V
Sbjct: 64 EMLDHAGLERALRGLDGVIFS 84
>1r5b_A Eukaryotic peptide chain release factor GTP- binding subunit;
translation termination, peptide release, GTPase; 2.35A
{Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1
c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Length = 467
Score = 31.3 bits (70), Expect = 0.37
Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 13/113 (11%)
Query: 2 VVSEATRLNSLDLDKNPKDMR----VVVAMSGGVD---SSVVAALLKRDGYDVIGVTLQL 54
V +AT L + + KDM V + G VD S++ +L G ++
Sbjct: 19 VTEDATDLQNEVDQELLKDMYGKEHVNIVFIGHVDAGKSTLGGNILFLTG--MVDKRTME 76
Query: 55 YNSRKASKRKGSCCAGQDVYDA----RRVCDTINVSHYVFDYEERFRNAVIVP 103
R+A + D+ R T+ V F+ E R + + P
Sbjct: 77 KIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAP 129
>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370,
Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2;
2.00A {Bacteroides thetaiotaomicron}
Length = 227
Score = 31.3 bits (69), Expect = 0.38
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 8/75 (10%)
Query: 19 KDMRVVVA-MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
K ++V+ SG V S+++ L R G++V V R K K +
Sbjct: 3 KVKKIVLIGASGFVGSALLNEALNR-GFEVTAV------VRHPEKIKIENEHLKVKKADV 55
Query: 78 RVCDTINVSHYVFDY 92
D + D
Sbjct: 56 SSLDEVCEVCKGADA 70
>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET:
NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*
Length = 311
Score = 31.2 bits (69), Expect = 0.40
Identities = 34/181 (18%), Positives = 56/181 (30%), Gaps = 12/181 (6%)
Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
MRV+V G S + L G +V + L ++ + KG D+ D V
Sbjct: 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLD-NLATGKRENVPKGVPFFRVDLRDKEGV- 58
Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
F + AS + E P+ + N + +LL RQ G +
Sbjct: 59 ------ERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVN-LLGGLNLLEACRQYGVEK 111
Query: 141 LATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFPLGDMKKESV 200
L + +G+R P Y + + +K S+
Sbjct: 112 LVFASTGGAIYGEVPEGERAEETWPP---RPKSPYAASKAAFEHYLSVYGQSYGLKWVSL 168
Query: 201 R 201
R
Sbjct: 169 R 169
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 30.6 bits (68), Expect = 0.62
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 18/76 (23%)
Query: 331 RSSQDPVPVFVQRNDDGVYVDFEKSEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSD 390
RS +PV GV F+K G G A + + + ++L GII G++ +D
Sbjct: 1367 RSEGNPVI--------GV---FQKFLTGHPKGAAGAWMMNGA--LQILNSGIIPGNRNAD 1413
Query: 391 AVEESLLSVIGDEFPY 406
V++ L ++F Y
Sbjct: 1414 NVDKIL-----EQFEY 1424
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 30.5 bits (67), Expect = 0.64
Identities = 8/73 (10%), Positives = 18/73 (24%), Gaps = 5/73 (6%)
Query: 21 MRVVVA-MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
M++ + +G V S++ +L Y + + + DV
Sbjct: 1 MKIFIVGSTGRVGKSLLKSLSTT-DYQIYAGA---RKVEQVPQYNNVKAVHFDVDWTPEE 56
Query: 80 CDTINVSHYVFDY 92
Sbjct: 57 MAKQLHGMDAIIN 69
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 30.5 bits (67), Expect = 0.76
Identities = 6/71 (8%), Positives = 21/71 (29%), Gaps = 2/71 (2%)
Query: 21 MRVVVA-MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
M +++ +G + + + + D + ++ R D ++ +
Sbjct: 1 MNIMLTGATGHLGTHITNQAIAN-HIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESM 59
Query: 80 CDTINVSHYVF 90
+ V
Sbjct: 60 VEAFKGMDTVV 70
>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown
function, PSI-2, protein structure initiative; 1.44A
{Methylobacillus flagellatus KT}
Length = 286
Score = 30.2 bits (66), Expect = 0.89
Identities = 6/31 (19%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVT 51
++++A G + + L + G++V G+
Sbjct: 4 SKILIAGCGDLGLELARRLTAQ-GHEVTGLR 33
>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase,
GDP-gulose, GDP-galactose, keto intermediate, vitamin C,
SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*
Length = 379
Score = 29.9 bits (66), Expect = 1.0
Identities = 14/118 (11%), Positives = 36/118 (30%), Gaps = 5/118 (4%)
Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGV----TLQLYNSRKASK-RKGSCCAGQDV 73
+++++ + +GG +S +A LK +G+ VI + + ++
Sbjct: 28 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENC 87
Query: 74 YDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLS 131
D + ++ V ++ + N +F S
Sbjct: 88 LKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASS 145
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase,
EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8
Length = 408
Score = 29.5 bits (65), Expect = 1.3
Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 10/122 (8%)
Query: 271 GVAMGEPLFVVYLDKNSSRVIVGPRESLEVHRIYLREINWLGD------GLFEDAVVDGF 324
GV ++ D + V+ P + N L L + + G
Sbjct: 290 GVGTTLDPYLTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTKEELKIEPLRTGE 349
Query: 325 KCFVKIRSSQDPVPVFVQRNDDGVYVDFE-KSEVGVASGQACVFYTSDSNEARVLGGGII 383
+ I ++ + + G D + K + G + R++G G I
Sbjct: 350 VLMLNIGTAT--TAGVI-TSARGDIADIKLKLPICAEIGDRVAISRRVGSRWRLIGYGTI 406
Query: 384 SG 385
G
Sbjct: 407 EG 408
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodanese, flavin adenine
dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 29.6 bits (65), Expect = 1.4
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 14 LDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVI 48
L++ P D + + G+ V A +L GY V
Sbjct: 535 LEEVPVDKDIYITCQLGMRGYVAARMLMEKGYKVK 569
>2b7f_A HTLV protease; hydrolase; HET: STA; 2.60A {Human t-lymphotropic
virus 1}
Length = 116
Score = 29.3 bits (66), Expect = 1.6
Identities = 4/35 (11%), Positives = 11/35 (31%)
Query: 305 LREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPV 339
+ + + ++ V G + +PV
Sbjct: 40 IPIALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPV 74
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA;
3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Length = 660
Score = 29.2 bits (65), Expect = 1.9
Identities = 9/48 (18%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 19 KDMRVVVA-MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
+ RV++ ++G + + + LL+ D Y+V G+ + +
Sbjct: 314 RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPH 361
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural
genomics, APC7755, NADP, PSI-2, protein structure
initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 28.9 bits (63), Expect = 1.9
Identities = 11/75 (14%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 19 KDMRVVVA-MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDAR 77
+ MRV+V +G V +++ L + G++ + + R + G
Sbjct: 20 QGMRVLVVGANGKVARYLLSELKNK-GHEPVAMV------RNEEQGPELRERGASDIVVA 72
Query: 78 RVCDTINVSHYVFDY 92
+ + + + D
Sbjct: 73 NLEEDFSHAFASIDA 87
>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A
{Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*
Length = 397
Score = 29.0 bits (63), Expect = 2.0
Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 1/73 (1%)
Query: 21 MRVVVAMSGG-VDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRV 79
MRV+V G + S V ALL+ + V+ V + K+ + + + +
Sbjct: 3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGP 62
Query: 80 CDTINVSHYVFDY 92
+ +
Sbjct: 63 KPPWADRYAALEV 75
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; 15025322,
structural genomics, JCSG, protein structure
initiative, PSI; HET: NAI UNL; 2.05A {Clostridium
acetobutylicum atcc 824} SCOP: c.2.1.2
Length = 292
Score = 29.0 bits (63), Expect = 2.0
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ 53
M++++ + G + LK +VI +Q
Sbjct: 13 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQ 45
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide complex; HET:
NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A*
2pzk_A*
Length = 330
Score = 28.9 bits (63), Expect = 2.2
Identities = 6/46 (13%), Positives = 16/46 (34%)
Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRK 64
MR+++ G S + G++++ + R+
Sbjct: 19 SHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPV 64
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 28.7 bits (63), Expect = 2.3
Identities = 14/100 (14%), Positives = 26/100 (26%), Gaps = 7/100 (7%)
Query: 19 KDMRVVVA-MSGGVDSSVVAALLKRDGYDVIGVT-----LQLYNSRKASKRKGSCCAGQD 72
++ + +G + +A ++ GY+V + L R A G D
Sbjct: 2 AVKKIAIFGATGQTGLTTLAQAVQA-GYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAAD 60
Query: 73 VYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGE 112
V D + V + A
Sbjct: 61 VDKTVAGQDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKA 100
>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG;
1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A*
1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A*
2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A*
1a9y_A*
Length = 338
Score = 28.8 bits (63), Expect = 2.4
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKR 63
MRV+V G S L ++G+DVI + + R
Sbjct: 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPV 43
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Length = 365
Score = 28.8 bits (63), Expect = 2.6
Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQ-DVYDAR 77
+ M+V++ +G + +A LK + +DV + N+ K K + D +
Sbjct: 15 RHMKVLILGAGNI-GRAIAWDLKDE-FDVYIGDV---NNENLEKVKEFATPLKVDASNFD 69
Query: 78 RVCDTINVSHYV 89
++ + + V
Sbjct: 70 KLVEVMKEFELV 81
>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain
dehydrogenase reductase, oxidoreductase; HET: NMN AMP;
1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB:
1ujm_A* 1zze_A
Length = 342
Score = 28.6 bits (62), Expect = 2.6
Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 18 PKDMRVVVA-MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVY 74
P+ V+V +G V S VV LL+ GY V G KR + G+
Sbjct: 9 PEGSLVLVTGANGFVASHVVEQLLEH-GYKVRGTARSASKLANLQKRWDAKYPGRFET 65
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.70A {Thermus thermophilus HB8}
PDB: 2eg3_A
Length = 230
Score = 28.5 bits (62), Expect = 2.6
Identities = 7/30 (23%), Positives = 10/30 (33%)
Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDV 47
V V G S+V +L+ G
Sbjct: 182 QPGQEVGVYCHSGARSAVAFFVLRSLGVRA 211
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide
detoxification, structural genomics, PSI, protein
structure initiative; 1.90A {Pseudomonas aeruginosa}
SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Length = 539
Score = 28.7 bits (63), Expect = 2.7
Identities = 4/34 (11%), Positives = 11/34 (32%)
Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYD 46
L++ R V+ + + A ++
Sbjct: 423 ALERLGTAERYVLTCGSSLLARFAVAEVQALSGK 456
>3i83_A 2-dehydropantoate 2-reductase; structural genomics,
oxidoreductase, NADP, pantothenate biosynthesis, PSI-2;
1.90A {Methylococcus capsulatus}
Length = 320
Score = 28.3 bits (62), Expect = 3.4
Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 8/77 (10%)
Query: 20 DMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG----SCCAGQDVYD 75
+ ++V +G + S ALL + G+ V++ + + K KG S G +
Sbjct: 2 SLNILVIGTGAI-GSFYGALLAKTGHC---VSVVSRSDYETVKAKGIRIRSATLGDYTFR 57
Query: 76 ARRVCDTINVSHYVFDY 92
V + D
Sbjct: 58 PAAVVRSAAELETKPDC 74
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 28.2 bits (61), Expect = 3.5
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVI 48
M+ VV + G+ + AA L + G++V
Sbjct: 1 MKTVV-IGAGLGGLLSAARLSKAGHEVE 27
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch
domain, heterodimer, pyrophosphate, G protein; HET: GDP
AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Length = 325
Score = 28.3 bits (62), Expect = 3.5
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 22 RVVVAMSGGVDSSVVAALLKR 42
V+ S G DS+V+ L ++
Sbjct: 48 NPVMLYSIGKDSAVMLHLARK 68
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural
genomics, protein structure initiative; 2.50A
{Geobacter metallireducens gs-15}
Length = 312
Score = 28.0 bits (61), Expect = 3.5
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVT 51
+R+ + +G + ALL+R G DV +
Sbjct: 3 LRIAIVGAGAL-GLYYGALLQRSGEDVHFLL 32
>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain
dehydrogenase/reductase, rossmann fold, oxidoreductase;
HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}
Length = 321
Score = 28.1 bits (61), Expect = 3.5
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGV 50
MR ++ G +A L +V G
Sbjct: 13 MRALITGVAGFVGKYLANHLTEQNVEVFGT 42
>3eyw_A C-terminal domain of glutathione-regulated potassium-efflux
system protein KEFC fused...; KTN, RCK, K+ channel, K+
transport, K+ efflux; HET: FMN NAD; 2.40A {Escherichia
coli K12}
Length = 413
Score = 28.3 bits (63), Expect = 3.6
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 18 PKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGV 50
MRV++A G + LL G ++ +
Sbjct: 2 SHGMRVIIAGFGRF-GQITGRLLLSSGVKMVVL 33
>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
northeast structural genomics consortium, NESG, C PSI-2;
2.00A {Corynebacterium glutamicum}
Length = 516
Score = 28.1 bits (62), Expect = 3.8
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 17 NPKDMRVVVA-MSGGVDSSVVAALLKRDGYDVIGVT 51
+ + V + G V ++ A L G++VI +
Sbjct: 144 DGSPLTVAITGSRGLVGRALTAQLQTG-GHEVIQLV 178
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X- RAY
crystallography structure, oxidoreductase; HET: OMT
NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 27.7 bits (60), Expect = 4.3
Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
M++ V G + +S+ L +R G+ +IGV+ Q KA +R+ AGQD+ +
Sbjct: 1 MKIGVVGLGLIGASLAGDLRRR-GHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAK 59
Query: 81 DTINVSHY 88
+
Sbjct: 60 IIFLCTPI 67
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase,
phosphoserine, enzyme-ligand complex, enzyme-metal
complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas
aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1
PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X*
2h4l_X* 2fkf_A* 3bkq_X* 3c04_A* 2fkm_X*
Length = 463
Score = 27.8 bits (61), Expect = 4.3
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 12 LDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVI 48
D K M+VVV GV + L++ G VI
Sbjct: 164 RDDIAMAKPMKVVVDCGNGVAGVIAPQLIEALGCSVI 200
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene,
phosphoprotein, GMP synthetase, guanine monophosphate
synthetase, chromosomal rearrangement; HET: XMP; 2.5A
{Homo sapiens}
Length = 697
Score = 27.7 bits (61), Expect = 4.4
Identities = 42/199 (21%), Positives = 67/199 (33%), Gaps = 17/199 (8%)
Query: 22 RVVVAMSGGVDSSVVAALLKRDGYD--VIGVTLQLYNSRKASK---RKGSCCAGQD--VY 74
+V+V +SGGVDS+V ALL R VI V + RK + G V
Sbjct: 242 KVLVLLSGGVDSTVCTALLNRALNQEQVIAVHIDNGFMRKRESQSVEEALKKLGIQVKVI 301
Query: 75 DARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTR 134
+A + + D + R + + + E D + + +
Sbjct: 302 NAAHSFYNGTTTLPISDEDRTPRKRISKTLNMTTSPEEKRKIIGDTFVKIANEVIGEMNL 361
Query: 135 QLGADVLATGHYI---RSRLYVGDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCDLRFP 191
+ LA G + GK I + + ++ + P
Sbjct: 362 KPEEVFLAQGTLRPDLIESASLVASGKAELI-------KTHHNDTELIRKLREEGKVIEP 414
Query: 192 LGDMKKESVRDLAREMGLD 210
L D K+ VR L RE+GL
Sbjct: 415 LKDFHKDEVRILGRELGLP 433
>1sur_A PAPS reductase; assimilatory sulfate reduction,
3-phospho-adenylyl-sulfate reductase, oxidoreductase;
2.00A {Escherichia coli} SCOP: c.26.2.2
Length = 215
Score = 27.8 bits (61), Expect = 4.6
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQ 53
V++ S G+ ++V L+ + D+ +
Sbjct: 46 EYVLSSSFGIQAAVSLHLVNQIRPDIPVILTD 77
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX,
montreal-kingston bacterial structural genomics
initiative, BSGI; HET: FMN; 2.00A {Escherichia coli
O157} SCOP: c.34.1.1
Length = 197
Score = 27.7 bits (61), Expect = 4.6
Identities = 11/87 (12%), Positives = 33/87 (37%), Gaps = 6/87 (6%)
Query: 21 MRVVVAMSGGVDS----SVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDA 76
M+++V M+G + +++ AL + + V + ++ + + A A
Sbjct: 1 MKLIVGMTGATGAPLGVALLQALREMPNVETHLVMSK--WAKTTIELETPYSARDVAALA 58
Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVP 103
+ + + + R +++P
Sbjct: 59 DFSHNPADQAATISSGSFRTDGMIVIP 85
>2wm3_A NMRA-like family domain containing protein 1; unknown function;
HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A*
3dxf_A 3e5m_A
Length = 299
Score = 27.7 bits (60), Expect = 4.6
Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSR-KASKRKGSCCAGQDVYDAR 77
K + VV +G SV LL+ + V VT K + +G+ D D
Sbjct: 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQV 64
Query: 78 RVCDTINVSHYVF 90
+ +N ++ F
Sbjct: 65 IMELALNGAYATF 77
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain
dehydrogenase reductase, flavonoid, oxidoreductase; HET:
NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Length = 346
Score = 27.9 bits (61), Expect = 4.7
Identities = 14/107 (13%), Positives = 25/107 (23%), Gaps = 7/107 (6%)
Query: 21 MRVVVA-MSGGVDSSVVAALLKRDGYDVIGVT-LQLYNSRKASKRKGSCCAGQDVYDARR 78
RV++A +G + V A L + + KA K G +
Sbjct: 11 GRVLIAGATGFIGQFVATASLDA-HRPTYILARPGPRSPSKAKIFKALEDKGAII----V 65
Query: 79 VCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVK 125
+E + V+ + L
Sbjct: 66 YGLINEQEAMEKILKEHEIDIVVSTVGGESILDQIALVKAMKAVGTI 112
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 27.5 bits (60), Expect = 5.2
Identities = 7/42 (16%), Positives = 20/42 (47%)
Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKR 42
++++ + +D+ P++++ + S G D + A R
Sbjct: 48 LLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKAR 89
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family
ketopantoate reductase, structural genomics; HET: NDP
BCN; 2.15A {Ralstonia eutropha JMP134}
Length = 318
Score = 27.6 bits (60), Expect = 5.2
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 19 KDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVT 51
+ M+V + +G V +L R G++VI +
Sbjct: 18 QGMKVAIMGAGAV-GCYYGGMLARAGHEVILIA 49
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus
musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Length = 90
Score = 27.4 bits (61), Expect = 5.9
Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 13/86 (15%)
Query: 154 GDDGKRRRIMCRPMDLERDQSYFLFATTQQQLCD-LRFPLG---DMKKESVRDLAREMGL 209
G + RR P++L +++LC +R G + K + + ++ GL
Sbjct: 1 GSNSGRRSAP--PLNLTGLPGTEKLNEKEKELCQVVRLVPGAYLEYKSALLNECHKQGGL 58
Query: 210 DIADKSDSQDICFVQQGKYFDVVKRI 235
+ ++ + + K ++I
Sbjct: 59 ---RLAQARALIKIDVNK----TRKI 77
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, biosynthetic
protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana}
SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 27.3 bits (59), Expect = 6.3
Identities = 11/70 (15%), Positives = 18/70 (25%)
Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
RV+V G A L + Y+V V + S ++D
Sbjct: 12 SRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRW 71
Query: 81 DTINVSHYVF 90
+
Sbjct: 72 KALTGKSIEL 81
>3gmb_A 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase; flavin
monooxygenase, oxidoreductase; HET: FAD; 2.10A
{Mesorhizobium loti} PDB: 3gmc_A*
Length = 415
Score = 27.4 bits (59), Expect = 6.5
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 13 DLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVI 48
+++K P R GG A LK++G+DV
Sbjct: 39 NVNKTPGKTRRAEVAGGGFAGLTAAIALKQNGWDVR 74
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 27.4 bits (59), Expect = 6.7
Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 2/56 (3%)
Query: 19 KDMRVVVA-MSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV 73
K RV++ +G + +V A + G+ + S +
Sbjct: 3 KKSRVLIVGGTGYIGKRIVNASISL-GHPTYVLFRPEVVSNIDKVQMLLYFKQLGA 57
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 27.1 bits (59), Expect = 6.8
Identities = 16/63 (25%), Positives = 25/63 (39%)
Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVCD 81
V++ SG V V+ L D +V L N++ +K GS DV D +
Sbjct: 25 NVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDK 84
Query: 82 TIN 84
+
Sbjct: 85 VLA 87
>1wlh_A Gelation factor; ABP-120, filamin, immunoglobulin fold, ROD domain,
structural protein; 2.80A {Dictyostelium discoideum}
SCOP: b.1.18.10 b.1.18.10 b.1.18.10 PDB: 1ksr_A
Length = 311
Score = 27.0 bits (58), Expect = 7.5
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 325 KCFVKIRSSQDPVPVFVQRNDDGVY-VDFEKSEVG 358
K V I + + + N DG Y + G
Sbjct: 235 KFEVSITGPAEEITLDAIDNQDGTYTAAYSLVGNG 269
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase;
beta barrel, switch domain, heterodimer, pyrophosphate,
G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV}
SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Length = 434
Score = 27.1 bits (59), Expect = 8.1
Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 9/102 (8%)
Query: 9 LNSLDLDKNPKDMRVVVAMSGGVD---SSVVAALLKRDGYDVIGVTLQLYNSRKASKRKG 65
L L + + +R + G VD S+++ LL + K S G
Sbjct: 13 LAYLGQHERKEMLRFLTC--GNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTG 70
Query: 66 SCCAGQDVYDA----RRVCDTINVSHYVFDYEERFRNAVIVP 103
+ D R TI+V++ F +R P
Sbjct: 71 DDVDLALLVDGLQAEREQGITIDVAYRYFSTAKRKFIIADTP 112
>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain
rossmann fold, C-terminal mixed alpha/beta domain; HET:
NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2
Length = 310
Score = 26.9 bits (58), Expect = 8.4
Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 9/121 (7%)
Query: 21 MRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDVYDARRVC 80
M +V +G + S++V AL + D++ V L + K +
Sbjct: 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVD-NLKDGTKFVNLVD--------LNIADYM 51
Query: 81 DTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQLGADV 140
D + + EE I + + E + N +LL +
Sbjct: 52 DKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPF 111
Query: 141 L 141
L
Sbjct: 112 L 112
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.322 0.139 0.407
Gapped
Lambda K H
0.267 0.0539 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,536,355
Number of extensions: 168472
Number of successful extensions: 794
Number of sequences better than 10.0: 1
Number of HSP's gapped: 764
Number of HSP's successfully gapped: 87
Length of query: 408
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 313
Effective length of database: 3,390,050
Effective search space: 1061085650
Effective search space used: 1061085650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.6 bits)