BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780151|ref|YP_003064564.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter asiaticus str. psy62] (408 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780151|ref|YP_003064564.1| tRNA-specific 2-thiouridylase MnmA [Candidatus Liberibacter asiaticus str. psy62] Length = 408 Score = 830 bits (2144), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/408 (100%), Positives = 408/408 (100%) Query: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA Sbjct: 1 MVVSEATRLNSLDLDKNPKDMRVVVAMSGGVDSSVVAALLKRDGYDVIGVTLQLYNSRKA 60 Query: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC Sbjct: 61 SKRKGSCCAGQDVYDARRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDC 120 Query: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT Sbjct: 121 NRTVKFSDLLSVTRQLGADVLATGHYIRSRLYVGDDGKRRRIMCRPMDLERDQSYFLFAT 180 Query: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA Sbjct: 181 TQQQLCDLRFPLGDMKKESVRDLAREMGLDIADKSDSQDICFVQQGKYFDVVKRINAGIA 240 Query: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV Sbjct: 241 LEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSRVIVGPRESLEV 300 Query: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA Sbjct: 301 HRIYLREINWLGDGLFEDAVVDGFKCFVKIRSSQDPVPVFVQRNDDGVYVDFEKSEVGVA 360 Query: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM 408 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM Sbjct: 361 SGQACVFYTSDSNEARVLGGGIISGSKRSDAVEESLLSVIGDEFPYKM 408 >gi|254780414|ref|YP_003064827.1| GMP synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 520 Score = 31.6 bits (70), Expect = 0.022, Method: Compositional matrix adjust. Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 4/31 (12%) Query: 22 RVVVAMSGGVDSSVVAALLKRDGYDVIGVTL 52 RV+ A+SGGVDS+V A L+ Y+ IG+ L Sbjct: 224 RVICAVSGGVDSTVAAFLI----YEAIGINL 250 >gi|254780999|ref|YP_003065412.1| NAD synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 562 Score = 27.7 bits (60), Expect = 0.40, Method: Compositional matrix adjust. Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 6/68 (8%) Query: 22 RVVVAMSGGVDSSVVAAL----LKRDGYDVIGVTLQLYNSRKASKRKGSCCAGQDV-YDA 76 +V++ +SGG+DS++ AA+ L ++ I + + Y S ++ + +C YD Sbjct: 294 KVIIGLSGGIDSALCAAIAVDALGKENVQTIMLPYK-YTSPQSLEDAAACAKALGCKYDV 352 Query: 77 RRVCDTIN 84 + D +N Sbjct: 353 LPIHDLVN 360 >gi|254780280|ref|YP_003064693.1| glucokinase [Candidatus Liberibacter asiaticus str. psy62] Length = 348 Score = 26.9 bits (58), Expect = 0.62, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 10/82 (12%) Query: 230 DVVKRINAGIALEGDIVHLNGQILGRHNGIINYTIGQRRGLGVAMGEPLFVVYLDKNSSR 289 D+V + IAL+ ++L + LGR G + R G+ ++ G P ++ L +NSS Sbjct: 234 DIVSKSEDPIALKA--INLFCEYLGRVAGDLALIFMARGGVYISGGIPYKIIDLLRNSSF 291 Query: 290 VIVGPRESLE---VHRIYLREI 308 RES E H+ +R+I Sbjct: 292 -----RESFENKSPHKELMRQI 308 >gi|254780234|ref|YP_003064647.1| argininosuccinate synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 404 Score = 26.2 bits (56), Expect = 1.0, Method: Compositional matrix adjust. Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 20/128 (15%) Query: 22 RVVVAMSGGVDSSVVAALLK-RDGYDVIGVTLQLYNSR--KASKRKGSCCAGQDVY--DA 76 +VV+A SGG+D+S++ L+ G +VI L K + K ++VY D Sbjct: 7 KVVLAYSGGLDTSIILKWLQVEKGLEVIVFIADLGQGEELKIASDKARLLGAKEVYVKDL 66 Query: 77 RRVCDTINVSHYVFDYEERFRNAVIVPFASSYAAGETPLPCVDCNRTVKFSDLLSVTRQL 136 RR V +VF FR + + Y G R + L+ + + Sbjct: 67 RREF----VRDFVFPM---FRANAL--YEGYYLLGTA------IARPLIAKYLVDIANET 111 Query: 137 GADVLATG 144 GAD +A G Sbjct: 112 GADAIAHG 119 >gi|254781004|ref|YP_003065417.1| threonyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 652 Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust. Identities = 13/30 (43%), Positives = 17/30 (56%) Query: 180 TTQQQLCDLRFPLGDMKKESVRDLAREMGL 209 TQQ+L + L + +K R LAREM L Sbjct: 226 NTQQELTQYLYFLEESEKRDHRKLAREMDL 255 >gi|254780145|ref|YP_003064558.1| 50S ribosomal protein L10 [Candidatus Liberibacter asiaticus str. psy62] Length = 172 Score = 25.8 bits (55), Expect = 1.3, Method: Compositional matrix adjust. Identities = 13/40 (32%), Positives = 25/40 (62%) Query: 355 SEVGVASGQACVFYTSDSNEARVLGGGIISGSKRSDAVEE 394 S+ V + + V +++D+NE RVLGG + G D++++ Sbjct: 83 SDSPVIAPKISVSFSNDNNEFRVLGGVVEKGVLNQDSIKQ 122 >gi|254780930|ref|YP_003065343.1| nodulation protein (outer membrane efflux protein) [Candidatus Liberibacter asiaticus str. psy62] Length = 452 Score = 25.0 bits (53), Expect = 2.3, Method: Compositional matrix adjust. Identities = 10/24 (41%), Positives = 17/24 (70%) Query: 382 IISGSKRSDAVEESLLSVIGDEFP 405 I+ ++R +A +E++LSV D FP Sbjct: 75 ILQATERINAAKENILSVRADLFP 98 >gi|254780801|ref|YP_003065214.1| hypothetical protein CLIBASIA_03460 [Candidatus Liberibacter asiaticus str. psy62] Length = 222 Score = 23.5 bits (49), Expect = 6.2, Method: Compositional matrix adjust. Identities = 14/31 (45%), Positives = 17/31 (54%) Query: 10 NSLDLDKNPKDMRVVVAMSGGVDSSVVAALL 40 NS L K PKD +VA+S VDS + L Sbjct: 16 NSAILAKRPKDSVSLVAVSKMVDSKKIRVAL 46 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.139 0.407 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 253,228 Number of Sequences: 1233 Number of extensions: 10619 Number of successful extensions: 34 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 22 Number of HSP's gapped (non-prelim): 11 length of query: 408 length of database: 328,796 effective HSP length: 76 effective length of query: 332 effective length of database: 235,088 effective search space: 78049216 effective search space used: 78049216 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 39 (19.6 bits)