Query gi|254780152|ref|YP_003064565.1| D-3-phosphoglycerate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 82 No_of_seqs 110 out of 4711 Neff 6.8 Searched_HMMs 33803 Date Mon May 23 02:01:20 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780152.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2pi1_A D-lactate dehydrogenas 99.8 1E-18 3E-23 124.2 6.8 81 1-81 58-139 (334) 2 >3ba1_A HPPR, hydroxyphenylpyr 99.3 1E-12 3.1E-17 91.0 4.9 58 1-58 81-142 (150) 3 >2ekl_A D-3-phosphoglycerate d 99.3 1.2E-12 3.5E-17 90.7 4.6 59 1-59 62-124 (127) 4 >2cuk_A Glycerate dehydrogenas 99.3 1.4E-12 4.2E-17 90.3 5.0 58 1-58 59-120 (128) 5 >2dbq_A Glyoxylate reductase; 99.3 1.9E-12 5.7E-17 89.5 5.1 58 1-58 61-122 (142) 6 >3k5p_A D-3-phosphoglycerate d 99.2 1.2E-11 3.6E-16 85.1 4.9 57 1-57 74-134 (144) 7 >2j6i_A Formate dehydrogenase; 99.2 7.2E-12 2.1E-16 86.4 3.6 47 1-47 78-124 (168) 8 >1mx3_A CTBP1, C-terminal bind 99.2 9.7E-12 2.9E-16 85.6 3.2 41 1-41 79-119 (152) 9 >1sc6_A PGDH, D-3-phosphoglyce 99.2 2E-11 5.8E-16 83.9 4.8 51 1-52 63-113 (133) 10 >2g76_A 3-PGDH, D-3-phosphogly 99.2 1.1E-11 3.3E-16 85.3 3.2 42 1-42 83-124 (150) 11 >2o4c_A Erythronate-4-phosphat 99.2 1.4E-11 4.3E-16 84.7 3.6 41 1-41 52-92 (120) 12 >2nac_A NAD-dependent formate 99.2 1.5E-11 4.6E-16 84.5 3.6 50 1-50 107-157 (203) 13 >2w2k_A D-mandelate dehydrogen 99.2 1.2E-11 3.5E-16 85.2 3.0 63 1-70 73-137 (153) 14 >2d0i_A Dehydrogenase; structu 99.2 3.6E-11 1.1E-15 82.5 4.9 58 1-58 58-118 (141) 15 >1ygy_A PGDH, D-3-phosphoglyce 99.1 2.3E-11 6.9E-16 83.5 3.4 42 1-42 60-101 (137) 16 >1wwk_A Phosphoglycerate dehyd 99.1 3.4E-11 9.9E-16 82.7 3.4 43 1-43 60-102 (121) 17 >1qp8_A Formate dehydrogenase; 99.1 2.4E-11 7.1E-16 83.5 2.2 61 1-64 44-104 (120) 18 >1dxy_A D-2-hydroxyisocaproate 99.1 7.8E-11 2.3E-15 80.6 4.1 48 2-49 61-110 (136) 19 >3gg9_A D-3-phosphoglycerate d 99.1 5.4E-11 1.6E-15 81.5 3.0 41 1-41 65-109 (157) 20 >1gdh_A D-glycerate dehydrogen 99.1 6.8E-11 2E-15 81.0 3.3 42 1-42 60-102 (130) 21 >1j4a_A D-LDH, D-lactate dehyd 99.1 7.8E-11 2.3E-15 80.6 3.0 44 5-48 68-113 (136) 22 >2gcg_A Glyoxylate reductase/h 99.0 2.3E-10 6.8E-15 78.1 5.2 43 2-44 70-113 (140) 23 >3evt_A Phosphoglycerate dehyd 99.0 6.2E-11 1.8E-15 81.2 1.9 64 1-74 55-118 (134) 24 >1xdw_A NAD+-dependent (R)-2-h 99.0 1.7E-10 5.1E-15 78.7 2.0 42 1-42 61-104 (133) 25 >3hg7_A D-isomer specific 2-hy 98.9 3.4E-10 1E-14 77.1 2.9 42 1-43 61-102 (140) 26 >1ygy_A PGDH, D-3-phosphoglyce 98.4 3.7E-07 1.1E-11 60.3 4.3 43 39-81 1-43 (185) 27 >2g76_A 3-PGDH, D-3-phosphogly 98.3 4.3E-07 1.3E-11 60.0 4.3 43 39-81 1-43 (185) 28 >3k5p_A D-3-phosphoglycerate d 98.3 5.3E-07 1.6E-11 59.5 4.0 43 39-81 1-43 (188) 29 >1sc6_A PGDH, D-3-phosphoglyce 98.3 4.7E-07 1.4E-11 59.7 3.7 43 39-81 1-43 (188) 30 >1j4a_A D-LDH, D-lactate dehyd 98.3 6.1E-07 1.8E-11 59.2 3.7 42 40-81 1-42 (197) 31 >1wwk_A Phosphoglycerate dehyd 98.2 1E-06 3E-11 57.9 3.9 43 39-81 1-43 (186) 32 >3evt_A Phosphoglycerate dehyd 98.2 8.2E-07 2.4E-11 58.4 3.4 44 38-81 1-44 (190) 33 >2cuk_A Glycerate dehydrogenas 98.1 4.3E-06 1.3E-10 54.5 4.3 43 39-81 1-46 (183) 34 >1xdw_A NAD+-dependent (R)-2-h 98.0 3.4E-06 1E-10 55.0 3.6 42 40-81 1-43 (198) 35 >2j6i_A Formate dehydrogenase; 98.0 3.1E-06 9.1E-11 55.2 3.4 43 39-81 1-45 (196) 36 >3kbo_A Glyoxylate/hydroxypyru 98.0 3.2E-06 9.3E-11 55.2 3.4 37 39-75 2-38 (185) 37 >3gvx_A Glycerate dehydrogenas 98.0 3.6E-06 1.1E-10 54.9 3.4 37 38-74 1-37 (181) 38 >3hg7_A D-isomer specific 2-hy 98.0 4.3E-06 1.3E-10 54.5 3.4 36 39-74 1-36 (184) 39 >2gcg_A Glyoxylate reductase/h 98.0 6.4E-06 1.9E-10 53.5 4.2 43 39-81 1-46 (190) 40 >1qp8_A Formate dehydrogenase; 98.0 7.4E-06 2.2E-10 53.2 4.1 37 39-75 1-37 (183) 41 >2ekl_A D-3-phosphoglycerate d 97.9 8E-06 2.4E-10 53.0 4.0 37 39-75 1-37 (186) 42 >2d0i_A Dehydrogenase; structu 97.9 6.8E-06 2E-10 53.3 3.6 37 38-74 1-37 (192) 43 >1dxy_A D-2-hydroxyisocaproate 97.9 5.1E-06 1.5E-10 54.1 2.8 42 40-81 1-43 (197) 44 >3gg9_A D-3-phosphoglycerate d 97.9 9.5E-06 2.8E-10 52.5 4.1 34 42-75 2-35 (195) 45 >2nac_A NAD-dependent formate 97.9 7.2E-06 2.1E-10 53.2 3.5 43 39-81 1-45 (190) 46 >1mx3_A CTBP1, C-terminal bind 97.9 8.3E-06 2.5E-10 52.9 3.4 36 39-74 1-36 (195) 47 >3gvx_A Glycerate dehydrogenas 97.9 1.3E-05 3.8E-10 51.8 4.3 57 3-62 45-101 (109) 48 >3ba1_A HPPR, hydroxyphenylpyr 97.9 9.3E-06 2.8E-10 52.6 3.5 43 39-81 1-44 (183) 49 >1gdh_A D-glycerate dehydrogen 97.9 1.3E-05 3.7E-10 51.9 4.0 43 39-81 1-46 (190) 50 >2w2k_A D-mandelate dehydrogen 97.8 8.4E-06 2.5E-10 52.8 2.0 36 39-74 1-36 (195) 51 >2dbq_A Glyoxylate reductase; 97.6 2.7E-05 8E-10 50.0 2.7 34 39-72 1-34 (192) 52 >2o4c_A Erythronate-4-phosphat 94.6 0.0018 5.4E-08 39.9 -3.0 32 40-71 1-32 (167) 53 >3kbo_A Glyoxylate/hydroxypyru 93.4 0.043 1.3E-06 32.4 2.2 41 2-43 54-100 (130) 54 >1pjc_A Protein (L-alanine deh 80.4 0.6 1.8E-05 26.0 1.0 33 42-74 1-33 (192) 55 >2vhw_A Alanine dehydrogenase; 76.6 0.47 1.4E-05 26.6 -0.5 23 42-64 7-29 (194) 56 >2eez_A Alanine dehydrogenase; 71.0 0.79 2.4E-05 25.4 -0.5 26 42-67 7-32 (193) 57 >2uyy_A N-PAC protein; long-ch 59.5 2.4 7.1E-05 22.7 0.2 23 52-74 1-23 (193) 58 >1vqz_A Lipoate-protein ligase 36.1 13 0.0004 18.6 1.0 19 19-37 14-32 (42) 59 >1v8b_A Adenosylhomocysteinase 35.2 2.9 8.7E-05 22.2 -2.5 20 54-73 1-20 (168) 60 >3d64_A Adenosylhomocysteinase 34.0 7 0.00021 20.2 -0.8 20 54-73 1-20 (163) 61 >3d4o_A Dipicolinate synthase 28.3 12 0.00036 18.8 -0.3 24 35-58 3-26 (144) 62 >2r7r_A RNA-dependent RNA poly 23.2 60 0.0018 15.0 2.4 52 15-72 47-98 (120) 63 >3bh1_A UPF0371 protein DIP234 22.3 23 0.00069 17.2 0.2 41 2-42 108-149 (163) No 1 >>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure, structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex aeolicus VF5} (A:) Probab=99.76 E-value=1e-18 Score=124.20 Aligned_cols=81 Identities=21% Similarity=0.414 Sum_probs=73.6 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC-CCEEE Q ss_conf 80238898599981656088333674124413643143243552899999999997277999999985998611-21400 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKF-NFMGV 79 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~-~~~G~ 79 (82) +|+++|+||+|+++++|+||||+++|+++||.|+|+|++++.+|||++++++|+++|++..+++.++.+.|.+. .+.|. T Consensus 58 ~l~~~p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~~~~~~~~~~~~~ 137 (334) T 2pi1_A 58 LLSKXPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLKRIEDRVKKLNFSQDSEILAR 137 (334) T ss_dssp HHTTCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCGGGCBC T ss_pred HHHCCCCCCEEEECCCCCCCCCHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 99449986199988975784230365338879843898652767888765444101221211113322222222333232 Q ss_pred EC Q ss_conf 17 Q gi|254780152|r 80 EA 81 (82) Q Consensus 80 El 81 (82) +| T Consensus 138 ~l 139 (334) T 2pi1_A 138 EL 139 (334) T ss_dssp CG T ss_pred CC T ss_conf 01 No 2 >>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor binding domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* (A:1-118,A:302-333) Probab=99.34 E-value=1e-12 Score=91.00 Aligned_cols=58 Identities=24% Similarity=0.397 Sum_probs=51.9 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCC----CHHHHHHHHHHHHHHC Q ss_conf 802388985999816560883336741244136431432435----5289999999999727 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSI----TTAEHAISLMLAIARQ 58 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~----sVAE~~i~l~L~l~R~ 58 (82) +|+++|+||+|+++|+||||||+++|+++||+|+|+|+.-+. +.|+.+++-+.+..++ T Consensus 81 ~L~~~p~LK~I~~~g~G~D~IDl~aa~~~GI~V~N~pg~~~~~~~~~~~~~~~~~~~~~~~~ 142 (150) T 3ba1_A 81 LIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDSGTVETRKVMADLVVGNLEAHFSG 142 (150) T ss_dssp HHHHCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCCSTCSHHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC T ss_conf 99608557089971887553255310135521136898185999999999999999999869 No 3 >>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} (A:1-99,A:286-313) Probab=99.32 E-value=1.2e-12 Score=90.70 Aligned_cols=59 Identities=31% Similarity=0.495 Sum_probs=52.9 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCC----CHHHHHHHHHHHHHHCH Q ss_conf 802388985999816560883336741244136431432435----52899999999997277 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSI----TTAEHAISLMLAIARQI 59 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~----sVAE~~i~l~L~l~R~~ 59 (82) +|+++|+||+|+++|+||||||+++|+++||+|+|+|+..+. -|||++---+|..++.+ T Consensus 62 ~L~~~p~LK~I~~~gvGyD~VDi~aa~erGI~V~Ntpg~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (127) T 2ekl_A 62 VIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGAQTKEAQKRVAEMTTQNLLNAMKEL 124 (127) T ss_dssp HHHHCTTCCEEEECSSCCTTBCHHHHHHTTCEEECCTTTCSHHHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHCCCCCEEEECCCCCCCCCCCCCCCCCHHEECCCCHCHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 997386763443046434422211000000101237884789999999999999999998627 No 4 >>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus HB8} (A:1-96,A:280-311) Probab=99.32 E-value=1.4e-12 Score=90.27 Aligned_cols=58 Identities=34% Similarity=0.454 Sum_probs=51.5 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCC----CHHHHHHHHHHHHHHC Q ss_conf 802388985999816560883336741244136431432435----5289999999999727 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSI----TTAEHAISLMLAIARQ 58 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~----sVAE~~i~l~L~l~R~ 58 (82) +|+++|+||+|+++|+||||||+++|+++||+|+|+|++-+. +.||.++.-+++...+ T Consensus 59 ~L~~~p~LKlI~~~g~G~d~IDv~aa~~rGI~V~N~pg~~~~~~~~~~~~~~~~~~~~~~~~ 120 (128) T 2cuk_A 59 VMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGSAGRTTRERMAEVAVENLLAVLEG 120 (128) T ss_dssp HHHHSTTCCEEECSSSCCTTBCHHHHHTTTCEEECCCSTCBHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC T ss_conf 99732235602110101333333322233321022110383999999999999999999869 No 5 >>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, structural genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* (A:1-98,A:291-334) Probab=99.31 E-value=1.9e-12 Score=89.52 Aligned_cols=58 Identities=33% Similarity=0.500 Sum_probs=51.7 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCC----CHHHHHHHHHHHHHHC Q ss_conf 802388985999816560883336741244136431432435----5289999999999727 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSI----TTAEHAISLMLAIARQ 58 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~----sVAE~~i~l~L~l~R~ 58 (82) +|+++|+||+|+++|+||||||+++|+++||.|+|+|++-+. .+||++.-.++++.++ T Consensus 61 ~L~~~p~LK~I~~~gvG~D~IDl~aa~e~GI~V~N~pg~~~~~~~~~~~~~~~~~~~~~~~~ 122 (142) T 2dbq_A 61 VFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDSASFGAREGXAELVAKNLIAFKRG 122 (142) T ss_dssp HHHTCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTCSHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHCCCCCCEEEEECCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC T ss_conf 99518568889862344420000000123433445652184999999999999999999869 No 6 >>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infectious disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} (A:1-111,A:300-332) Probab=99.21 E-value=1.2e-11 Score=85.10 Aligned_cols=57 Identities=26% Similarity=0.506 Sum_probs=45.4 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCC----HHHHHHHHHHHHHH Q ss_conf 8023889859998165608833367412441364314324355----28999999999972 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSIT----TAEHAISLMLAIAR 57 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~s----VAE~~i~l~L~l~R 57 (82) +|+++|+||+|+++|+||||||+++|+++||.|+|+|+.++.. +|-.+-.-+|..++ T Consensus 74 ~L~~~p~LK~I~~~gvG~D~IDl~aa~erGI~V~N~pg~~~~~~~~~~~~~~~~~~~~~~~ 134 (144) T 3k5p_A 74 IFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFGSTEEAQERIGTEVTRKLVEYSD 134 (144) T ss_dssp HHHHCTTCCEEEECSSCCTTBCHHHHHHTTCCEECCSSTCCHHHHHHHHHHHHHHHHHHHH T ss_pred HHHCCCCCEEEEECCCCCCCCCCHHHCCCCHHEECCCCCCCHHHHHHHHHHHHHHHHHHHC T ss_conf 9940999719998885446546122002321001135627899999999999999999981 No 7 >>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A (A:1-117,A:314-364) Probab=99.21 E-value=7.2e-12 Score=86.35 Aligned_cols=47 Identities=28% Similarity=0.390 Sum_probs=42.7 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHH Q ss_conf 80238898599981656088333674124413643143243552899 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEH 47 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~ 47 (82) +|+++|+||+|+++|+|+||||+++|+++||.|+|+|++|..+..-. T Consensus 78 ~L~~ap~LKlI~taGvG~DhVDl~AA~erGI~V~nvpgsn~~~~~~~ 124 (168) T 2j6i_A 78 RIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGGTTLDAQ 124 (168) T ss_dssp HHHHCTTCCEEEESSSCCTTBCHHHHHHHTCCCEEEECTTGGSHHHH T ss_pred HHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCEEEECCCCHCHHHHH T ss_conf 99518996399990887766589999974992057358993839999 No 8 >>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepressor, transcription repressor; HET: NAD; 1.95A {Homo sapiens} (A:1-116,A:312-347) Probab=99.18 E-value=9.7e-12 Score=85.64 Aligned_cols=41 Identities=37% Similarity=0.494 Sum_probs=38.2 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCC Q ss_conf 80238898599981656088333674124413643143243 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNS 41 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~ 41 (82) +|+++|+||+|+++|+||||||+++|+++||.|+|+|+-.+ T Consensus 79 vL~~~p~LK~I~~~gvG~DnVDl~aa~krGI~V~NtpG~~~ 119 (152) T 1mx3_A 79 DLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAWYS 119 (152) T ss_dssp HHTTCSSCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTCC T ss_pred HHHCCCCCCEEEECCEECCCCCHHHHHHCCCEEEECCCCCH T ss_conf 99539985179999873251359989868999996998173 No 9 >>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} (A:1-100,A:289-321) Probab=99.18 E-value=2e-11 Score=83.94 Aligned_cols=51 Identities=39% Similarity=0.661 Sum_probs=42.8 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHH Q ss_conf 8023889859998165608833367412441364314324355289999999 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLM 52 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~ 52 (82) +|+++|+||+|+++|+|+||||+++|+++||.|+|+|+.++. -||-.++.+ T Consensus 63 ~L~~~p~LK~I~~~gvG~D~IDl~aa~erGI~V~N~pg~~~~-~~~~~~~~~ 113 (133) T 1sc6_A 63 VINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFGSTQ-EAQENIGLE 113 (133) T ss_dssp HHHHCSSCCEEEECSSCCTTBCHHHHHHTTCCEECCTTCCSH-HHHHHHHHH T ss_pred HHHCCCCCEEEEECCCCCCCHHCCCCCCCCEEEEECCCCCCH-HHHHHHHHH T ss_conf 995089874999947533641003010332014631575789-999999999 No 10 >>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, serine metabolism; HET: NAD; 1.70A {Homo sapiens} (A:1-120,A:306-335) Probab=99.17 E-value=1.1e-11 Score=85.28 Aligned_cols=42 Identities=55% Similarity=0.852 Sum_probs=39.4 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCC Q ss_conf 802388985999816560883336741244136431432435 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSI 42 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~ 42 (82) +|+++|+||+|+++|+||||||+++|+++||+|+|+|+.++. T Consensus 83 ~L~~~p~LK~I~~~gaG~D~IDl~aa~erGI~V~NtpG~~~~ 124 (150) T 2g76_A 83 VINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNASTK 124 (150) T ss_dssp HHHHCSSCCEEEESSSSCTTBCHHHHHHHTCEEECCSSTCBH T ss_pred HHHCCCCCCEEEEECCCCCCCHHHHHCCCCEEEECCCCCCCH T ss_conf 995071476687502334311011102343157303550829 No 11 >>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosphate ION, oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} (A:1-90,A:258-287) Probab=99.17 E-value=1.4e-11 Score=84.69 Aligned_cols=41 Identities=32% Similarity=0.370 Sum_probs=38.5 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCC Q ss_conf 80238898599981656088333674124413643143243 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNS 41 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~ 41 (82) .|+++|+||+|+++|+|+||||+++|+++||.|+|+|++.+ T Consensus 52 ~l~~ap~LK~I~~~gaG~D~IDl~aakerGI~VtN~pGv~~ 92 (120) T 2o4c_A 52 AALAGSPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCYS 92 (120) T ss_dssp HHHTTSCCCEEEECSSCSTTBCHHHHHHHTCEEECCTTTCC T ss_pred HHHCCCCCEEEEECCCCCCCCCCHHCCCCCCEEEECCCCCC T ss_conf 99758998499989804465075100255524997167476 No 12 >>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} (A:1-144,A:335-393) Probab=99.17 E-value=1.5e-11 Score=84.53 Aligned_cols=50 Identities=32% Similarity=0.506 Sum_probs=42.1 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCC-CHHHHHHH Q ss_conf 802388985999816560883336741244136431432435-52899999 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSI-TTAEHAIS 50 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~-sVAE~~i~ 50 (82) +|+++|+||+|+++|+|+||||+++|+++||.|+|+|+..+. +-+-++-+ T Consensus 107 ~L~~ap~LKlI~t~GvG~DhIDl~AA~erGI~V~nvPG~~~~~~~~~~~~~ 157 (203) T 2nac_A 107 RIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYGTTLTAQARYAAG 157 (203) T ss_dssp HHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEEECTTTCSHHHHHHHHHH T ss_pred HHCCCCCEEEEEECCCCCCCCCHHHHHCCCCEEEECCCCCHHHHHHHHHHH T ss_conf 973699806999817635743468885289889989981419999999999 No 13 >>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B (A:1-111,A:307-348) Probab=99.17 E-value=1.2e-11 Score=85.17 Aligned_cols=63 Identities=29% Similarity=0.341 Sum_probs=46.7 Q ss_pred CHHHCC-CCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCC-HHHHHHHHHHHHHHCHHHHHHHHHCCC Q ss_conf 802388-9859998165608833367412441364314324355-289999999999727799999998599 Q gi|254780152|r 1 MLSHAK-KMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSIT-TAEHAISLMLAIARQIPVANESTHKGK 70 (82) Q Consensus 1 il~~~~-~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~s-VAE~~i~l~L~l~R~~~~~~~~~~~g~ 70 (82) +|+++| +||+|+++|+||||||+++|+++||.|+|+|+.-+.. --|+--.-| ...++.+.+|+ T Consensus 73 iL~~lP~~LK~Ia~~gvGyDnIDv~aa~erGI~V~NtPG~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 137 (153) T 2w2k_A 73 LISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGGVAIETFHEFERLTM-------TNIDRFLLQGK 137 (153) T ss_dssp HHTTSCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTTCSHHHHHHHHHHHH-------HHHHHHHHTCC T ss_pred HHHHCCCCCEEEEECCCCCCCCCHHHHHHCEEEEEECCECCHHHHHHHHHHHHH-------HHHHHHHHCCC T ss_conf 997241272799999845675068888328588860101184999999999999-------99999997798 No 14 >>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.95A {Pyrococcus horikoshii OT3} (A:1-94,A:287-333) Probab=99.15 E-value=3.6e-11 Score=82.47 Aligned_cols=58 Identities=28% Similarity=0.350 Sum_probs=47.1 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCC---CHHHHHHHHHHHHHHC Q ss_conf 802388985999816560883336741244136431432435---5289999999999727 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSI---TTAEHAISLMLAIARQ 58 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~---sVAE~~i~l~L~l~R~ 58 (82) +|+++|+||+|+++|+|+||||+++|+++||.|+|+|+..-. .+|-.+.--+++..|. T Consensus 58 ~L~~~p~LK~I~~~gvG~D~IDl~aa~~rGI~V~NtP~~~~~~~~~~~~~~~~~~~~~~~~ 118 (141) T 2d0i_A 58 VLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLALEAQEDVGFRAVENLLKVLRG 118 (141) T ss_dssp HHTTCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCTCCHHHHHHHHHHHHHHHHHHHTT T ss_pred HHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHCC T ss_conf 9942856728865043453332222123342313101084999999999999999999879 No 15 >>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosynthesis, structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} (A:1-97,A:283-322) Probab=99.14 E-value=2.3e-11 Score=83.54 Aligned_cols=42 Identities=43% Similarity=0.736 Sum_probs=39.2 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCC Q ss_conf 802388985999816560883336741244136431432435 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSI 42 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~ 42 (82) +|+++|+||+|+++|+||||||+++|+++||.|+|+|+.++. T Consensus 60 vL~~~p~LK~I~~~gvGyDnIDl~aa~~rGI~V~NtPg~~~~ 101 (137) T 1ygy_A 60 VLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTASTA 101 (137) T ss_dssp HHHTCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSCBH T ss_pred HHHCCCCCCEEEECCCCCCCCCHHHHHHCCCEEEECCCCCCH T ss_conf 981599971999998333501588898679899988984328 No 16 >>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii OT3} (A:1-97,A:284-307) Probab=99.12 E-value=3.4e-11 Score=82.66 Aligned_cols=43 Identities=40% Similarity=0.718 Sum_probs=40.0 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCC Q ss_conf 8023889859998165608833367412441364314324355 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSIT 43 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~s 43 (82) +|+++|+||+|+++|+||||||+++|+++||.|+|+|+.++.. T Consensus 60 iL~~~p~LK~I~~~~vG~d~IDl~aa~~rGI~VtN~pg~~~~~ 102 (121) T 1wwk_A 60 VIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASTVE 102 (121) T ss_dssp HHTTCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCGGTCBHH T ss_pred HHHHCCCCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCHHH T ss_conf 9950887748965034453222111011023323466528299 No 17 >>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} (A:1-80,A:264-303) Probab=99.10 E-value=2.4e-11 Score=83.47 Aligned_cols=61 Identities=11% Similarity=0.048 Sum_probs=48.5 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHH Q ss_conf 8023889859998165608833367412441364314324355289999999999727799999 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANE 64 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~ 64 (82) +|+++|+||+|+++|+|+||||+++|+++||.|+|+|++...-|=...+ ....||+..+.. T Consensus 44 ~L~~ap~LKlIa~~gvG~D~IDl~aa~ergI~VtNaP~~~~~~~~~~~~---~~~~~~~~~~~~ 104 (120) T 1qp8_A 44 ELAKXPRLKFIQVVTAGLDHLPWESIPPHVTVAGNAGGYGNERVWRQXV---XEAVRNLITYAT 104 (120) T ss_dssp HHHHCTTCCCEEBSSSCCTTSCCTTSCTTSCEECCCSSSSCHHHHHHHH---HHHHHHHHHHHT T ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHCCCEEEECCCCCCHHHHHHHHH---HHHHHHHHHHHC T ss_conf 9960999809999986536125878867988996798655799999999---999999999983 No 18 >>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenase, oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} (A:1-100,A:298-333) Probab=99.08 E-value=7.8e-11 Score=80.64 Aligned_cols=48 Identities=29% Similarity=0.399 Sum_probs=40.7 Q ss_pred HHH--CCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHH Q ss_conf 023--889859998165608833367412441364314324355289999 Q gi|254780152|r 2 LSH--AKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAI 49 (82) Q Consensus 2 l~~--~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i 49 (82) |++ +|+||+|+++|+|+||||+++|+++||+|+|+|++.-..+|-|.+ T Consensus 61 l~~l~~p~LK~Is~~gvG~DnIDv~aa~erGI~V~NvPg~~~~~~~~~~~ 110 (136) T 1dxy_A 61 FEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYYYTETAVHNM 110 (136) T ss_dssp HHHHHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSTCSHHHHHHH T ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHH T ss_conf 97376479879999886445215999997899999899850969999999 No 19 >>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Ralstonia solanacearum} (A:1-107,A:303-352) Probab=99.07 E-value=5.4e-11 Score=81.53 Aligned_cols=41 Identities=22% Similarity=0.408 Sum_probs=37.1 Q ss_pred CHHHCCCCCEEEECC----CCCCCCCHHHHHCCCCEEEECCCCCC Q ss_conf 802388985999816----56088333674124413643143243 Q gi|254780152|r 1 MLSHAKKMKVVGRAG----IGTDNVDLVVASRAGIVVMNTPFGNS 41 (82) Q Consensus 1 il~~~~~Lk~I~~~g----~G~d~ID~~~~~~~gI~v~n~~~~~~ 41 (82) +|+++|+||+|+++| +||||||+++|+++||.|+|+|++-+ T Consensus 65 vl~~~p~LK~I~~~g~~~stG~D~IDi~aA~e~GI~V~NvPgy~~ 109 (157) T 3gg9_A 65 LLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGSYV 109 (157) T ss_dssp HHTTCTTCCEEEESSCCCCSSSCSBCHHHHHHHTCEEECCCCCTC T ss_pred HHHHCCCCCEEEECCCCCCCCCCCCCHHHHHHCCEEEECCCCCHH T ss_conf 996271042014414214557664749999518352100333456 No 20 >>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} (A:1-98,A:289-320) Probab=99.07 E-value=6.8e-11 Score=80.98 Aligned_cols=42 Identities=26% Similarity=0.469 Sum_probs=37.7 Q ss_pred CHHH-CCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCC Q ss_conf 8023-88985999816560883336741244136431432435 Q gi|254780152|r 1 MLSH-AKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSI 42 (82) Q Consensus 1 il~~-~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~ 42 (82) +|++ +|+||+|+++|+||||||+++|+++||+|+|+|++.+. T Consensus 60 ~L~~~~~~LK~Ia~~gvG~DnIDi~aa~e~GI~V~NtPG~~~~ 102 (130) T 1gdh_A 60 VIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHSAAT 102 (130) T ss_dssp HHHHSCTTCCEEEEESSCCTTBCHHHHHHTTCEEECCCCTCBH T ss_pred HHHHCCCCCEEEEECCEECCHHCHHHHHHCCCEEECCCCCCHH T ss_conf 9970658855999998603510799998779889828983559 No 21 >>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} (A:1-102,A:300-333) Probab=99.05 E-value=7.8e-11 Score=80.63 Aligned_cols=44 Identities=18% Similarity=0.285 Sum_probs=37.7 Q ss_pred CCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCC--CCHHHHH Q ss_conf 8898599981656088333674124413643143243--5528999 Q gi|254780152|r 5 AKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNS--ITTAEHA 48 (82) Q Consensus 5 ~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~--~sVAE~~ 48 (82) .|+||+|+++|+||||||+++|+++||+|+|+|++.- ++|-.++ T Consensus 68 ~p~LKlI~~~gvG~DnIDi~aa~e~GI~V~N~Pgv~~~~~~~~~~~ 113 (136) T 1j4a_A 68 DNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYFYTTHAVRNMV 113 (136) T ss_dssp HTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCCSTCBHHHHHHHH T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH T ss_conf 1795599988754563249999978958997898708499999999 No 22 >>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substrate-binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2h1s_A 2q50_A (A:1-107,A:298-330) Probab=99.05 E-value=2.3e-10 Score=78.06 Aligned_cols=43 Identities=28% Similarity=0.377 Sum_probs=38.3 Q ss_pred HHH-CCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCH Q ss_conf 023-8898599981656088333674124413643143243552 Q gi|254780152|r 2 LSH-AKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITT 44 (82) Q Consensus 2 l~~-~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sV 44 (82) |++ .|+||+|+++|+||||||+++|+++||.|+|+|+..++-+ T Consensus 70 L~a~~p~LK~Ia~~gvG~DnIDl~aa~~~GI~V~NtPg~~~~~~ 113 (140) T 2gcg_A 70 LDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDSATHRT 113 (140) T ss_dssp HHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTCBHHH T ss_pred HHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH T ss_conf 97111165343220343322233210011300011111071999 No 23 >>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} (A:1-91,A:282-324) Probab=99.03 E-value=6.2e-11 Score=81.18 Aligned_cols=64 Identities=22% Similarity=0.215 Sum_probs=48.6 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC Q ss_conf 80238898599981656088333674124413643143243552899999999997277999999985998611 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKF 74 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~ 74 (82) +|+++|+||+|+++|+||||||+++|+++||.|+|+|.-....| .-+.+ ....+.+++|.--|. T Consensus 55 lL~~~p~LK~Ia~~gaG~DnIDl~aa~erGI~VtNtP~~~~~~~-----~~~~~-----~~~~~~~~~~~~~~~ 118 (134) T 3evt_A 55 LARPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSAHFRATV-----FPIFA-----ANFAQFVKDGTLVRN 118 (134) T ss_dssp HHSTTCCCCEEECSSSCCTTSCHHHHHHTTCEEECCTCCHHHHH-----HHHHH-----HHHHHHHHHSCCCSC T ss_pred HHCCCCCCEEEEECCCCCCCCCHHHHHHCCEEEEECCHHHHHHH-----HHHHH-----HHHHHHHHCCCCCCC T ss_conf 95354777299985876785277989867908994289999999-----99999-----999999968997887 No 24 >>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} (A:1-101,A:300-331) Probab=98.97 E-value=1.7e-10 Score=78.72 Aligned_cols=42 Identities=26% Similarity=0.207 Sum_probs=36.8 Q ss_pred CHHHCCC--CCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCC Q ss_conf 8023889--85999816560883336741244136431432435 Q gi|254780152|r 1 MLSHAKK--MKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSI 42 (82) Q Consensus 1 il~~~~~--Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~ 42 (82) +|+++|+ ||+|+++|+||||||+++|+++||+|+|+|+++-. T Consensus 61 lL~~~p~l~LK~Is~~gvG~DnIDl~aa~erGI~V~NvPg~~~~ 104 (133) T 1xdw_A 61 NLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSYT 104 (133) T ss_dssp HHHHHHHHTCCEEEESSSCCTTBCHHHHHHTTCCEECCCCCTCS T ss_pred HHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCHCH T ss_conf 99842405980999877467764331123455378864014184 No 25 >>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase family protein; structural genomics, protein structure initiative; 1.80A {Aeromonas salmonicida subsp} (A:1-97,A:282-324) Probab=98.95 E-value=3.4e-10 Score=77.10 Aligned_cols=42 Identities=19% Similarity=0.122 Sum_probs=38.2 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCC Q ss_conf 8023889859998165608833367412441364314324355 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSIT 43 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~s 43 (82) +|+++|+||+|+++|+|+||||+++|++ ||.|+|+|++.+.+ T Consensus 61 lL~~~p~LKlI~~~gvG~D~IDl~A~er-GI~VtN~pG~~~~~ 102 (140) T 3hg7_A 61 LLAKANKLSWFQSTYAGVDVLLDARCRR-DYQLTNVRGAYSFP 102 (140) T ss_dssp GGGGCTTCCEEEESSSCCGGGSCTTSCC-SSEEECCCSSCCCH T ss_pred HHHCCCCCEEEEECCEECCHHHHHHHHC-CCEEECCCCHHHHH T ss_conf 9824998159998985207312668874-97684689865599 No 26 >>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosynthesis, structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} (A:98-282) Probab=98.37 E-value=3.7e-07 Score=60.31 Aligned_cols=43 Identities=42% Similarity=0.701 Sum_probs=39.5 Q ss_pred CCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEC Q ss_conf 2435528999999999972779999999859986112140017 Q gi|254780152|r 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVEA 81 (82) Q Consensus 39 ~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~~~G~El 81 (82) +|+.+|||++++++|++.|++..+++.+++|.|.+....|++| T Consensus 1 aNa~sVAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~l 43 (185) T 1ygy_A 1 SNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEI 43 (185) T ss_dssp SSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCC T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCC T ss_conf 7848999999999887766688765202222333222200000 No 27 >>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, serine metabolism; HET: NAD; 1.70A {Homo sapiens} (A:121-305) Probab=98.35 E-value=4.3e-07 Score=59.98 Aligned_cols=43 Identities=47% Similarity=0.825 Sum_probs=39.6 Q ss_pred CCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEC Q ss_conf 2435528999999999972779999999859986112140017 Q gi|254780152|r 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVEA 81 (82) Q Consensus 39 ~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~~~G~El 81 (82) +|+.+|||++++++|++.|++..+++.+++|.|++..+.|++| T Consensus 1 an~~~VAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~~~~~~l 43 (185) T 2g76_A 1 GNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTEL 43 (185) T ss_dssp TTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGGCBCCC T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 4442009999999999973299999999809866567675135 No 28 >>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infectious disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} (A:112-299) Probab=98.31 E-value=5.3e-07 Score=59.46 Aligned_cols=43 Identities=30% Similarity=0.407 Sum_probs=38.9 Q ss_pred CCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEC Q ss_conf 2435528999999999972779999999859986112140017 Q gi|254780152|r 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVEA 81 (82) Q Consensus 39 ~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~~~G~El 81 (82) +|+.+|||++++++|++.|++..+++.+++|.|.+....+++| T Consensus 1 aNa~~VAE~~l~~lL~~~R~~~~~~~~~~~g~w~~~~~~~~~l 43 (188) T 3k5p_A 1 SNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREV 43 (188) T ss_dssp TTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTCCCS T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCH T ss_conf 6544046788887653222333100002358732112332101 No 29 >>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} (A:101-288) Probab=98.30 E-value=4.7e-07 Score=59.74 Aligned_cols=43 Identities=33% Similarity=0.414 Sum_probs=39.9 Q ss_pred CCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEC Q ss_conf 2435528999999999972779999999859986112140017 Q gi|254780152|r 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVEA 81 (82) Q Consensus 39 ~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~~~G~El 81 (82) +|+.+|||+++++||++.|++..+++.+++|.|.+..+.|.|| T Consensus 1 ana~~vAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~~~~~~l 43 (188) T 1sc6_A 1 SNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEA 43 (188) T ss_dssp TTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCS T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 5444116788775421100135555565427632235655444 No 30 >>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} (A:103-299) Probab=98.28 E-value=6.1e-07 Score=59.15 Aligned_cols=42 Identities=24% Similarity=0.160 Sum_probs=38.0 Q ss_pred CCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEC Q ss_conf 435528999999999972779999999859986112140017 Q gi|254780152|r 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVEA 81 (82) Q Consensus 40 ~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~~~G~El 81 (82) |+.+|||++++++|++.|++..+++.+++|.|++....|.++ T Consensus 1 N~~sVAE~~i~~il~l~R~i~~~~~~~~~g~w~~~~~~~~~l 42 (197) T 1j4a_A 1 SPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREV 42 (197) T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCG T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE T ss_conf 868999999999999744255789999807853024466030 No 31 >>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii OT3} (A:98-283) Probab=98.22 E-value=1e-06 Score=57.92 Aligned_cols=43 Identities=37% Similarity=0.624 Sum_probs=38.9 Q ss_pred CCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEC Q ss_conf 2435528999999999972779999999859986112140017 Q gi|254780152|r 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVEA 81 (82) Q Consensus 39 ~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~~~G~El 81 (82) +|+.+|||++++++|++.|++..+++.+++|.|.+....|.+| T Consensus 1 ana~~VAE~~l~~iL~~~R~~~~~~~~~~~~~w~~~~~~~~~l 43 (186) T 1wwk_A 1 ASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIEL 43 (186) T ss_dssp GGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTCCBCCC T ss_pred CCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCC T ss_conf 3315688899888999884423678999748754446675314 No 32 >>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} (A:92-281) Probab=98.22 E-value=8.2e-07 Score=58.43 Aligned_cols=44 Identities=11% Similarity=0.015 Sum_probs=40.2 Q ss_pred CCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEC Q ss_conf 32435528999999999972779999999859986112140017 Q gi|254780152|r 38 FGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVEA 81 (82) Q Consensus 38 ~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~~~G~El 81 (82) |+|+.+|||++++++|++.|++..+++.++++.|.+....+++| T Consensus 1 G~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~~~~~~~~~~~~~l 44 (190) T 3evt_A 1 GIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPMTTSTL 44 (190) T ss_dssp THHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSSCCCCS T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCC T ss_conf 74116677989999986551034320111001234556554433 No 33 >>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus HB8} (A:97-279) Probab=98.05 E-value=4.3e-06 Score=54.48 Aligned_cols=43 Identities=23% Similarity=0.485 Sum_probs=37.1 Q ss_pred CCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC---CCEEEEC Q ss_conf 243552899999999997277999999985998611---2140017 Q gi|254780152|r 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKF---NFMGVEA 81 (82) Q Consensus 39 ~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~---~~~G~El 81 (82) .|+++|||+++++||++.|++..+++.+++|.|.+. .+.|+|| T Consensus 1 v~a~~VAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~l 46 (183) T 2cuk_A 1 VLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDL 46 (183) T ss_dssp TTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCC T ss_pred CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCCC T ss_conf 0233320000024565540416899999809744357545355213 No 34 >>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} (A:102-299) Probab=98.05 E-value=3.4e-06 Score=55.03 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=36.0 Q ss_pred CCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC-CEEEEC Q ss_conf 435528999999999972779999999859986112-140017 Q gi|254780152|r 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFN-FMGVEA 81 (82) Q Consensus 40 ~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~-~~G~El 81 (82) |+.+|||+++++||++.|++..+++.+++|.|.+.. +.|.|| T Consensus 1 N~~~VAE~~l~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l 43 (198) T 1xdw_A 1 SPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEV 43 (198) T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCCCCG T ss_pred CCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 5434430334333201203567766543025555433456423 No 35 >>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A (A:118-313) Probab=98.05 E-value=3.1e-06 Score=55.25 Aligned_cols=43 Identities=26% Similarity=0.369 Sum_probs=36.4 Q ss_pred CCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC--CCEEEEC Q ss_conf 243552899999999997277999999985998611--2140017 Q gi|254780152|r 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKF--NFMGVEA 81 (82) Q Consensus 39 ~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~--~~~G~El 81 (82) +|+.+|||++++++|++.|++..+++.+++|.|... .+.|.|| T Consensus 1 aNa~~vAE~~l~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l 45 (196) T 2j6i_A 1 SNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDI 45 (196) T ss_dssp SSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCS T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEC T ss_conf 877999999999999987648898888776430221234420333 No 36 >>3kbo_A Glyoxylate/hydroxypyruvate reductase A; NADP, cytoplasm, NAD, structural genomics; HET: NDP NDB EPE; 2.14A {Salmonella enterica subsp} (A:96-280) Probab=98.04 E-value=3.2e-06 Score=55.19 Aligned_cols=37 Identities=19% Similarity=0.316 Sum_probs=34.1 Q ss_pred CCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC Q ss_conf 2435528999999999972779999999859986112 Q gi|254780152|r 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFN 75 (82) Q Consensus 39 ~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~ 75 (82) .++.||||++++++|++.|++..+++.+++|.|++.. T Consensus 2 a~s~svAE~~l~~~L~~~R~~~~~~~~~~~g~w~~~~ 38 (185) T 3kbo_A 2 GXGLQXQEYAVSQVLHWFRRFDDYQALKNQALWKPLP 38 (185) T ss_dssp THHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCC T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCC T ss_conf 6789999999999999974442777766642102332 No 37 >>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} (A:79-259) Probab=98.02 E-value=3.6e-06 Score=54.86 Aligned_cols=37 Identities=38% Similarity=0.425 Sum_probs=34.6 Q ss_pred CCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC Q ss_conf 3243552899999999997277999999985998611 Q gi|254780152|r 38 FGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKF 74 (82) Q Consensus 38 ~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~ 74 (82) |+|+.+|||++++++|++.|++..+++.++++.|... T Consensus 1 G~~~~svAE~~l~~~l~~~R~~~~~~~~~~~~~w~~~ 37 (181) T 3gvx_A 1 GAYSISVAEHAFALLLAHAKNILENNELXKAGIFRQS 37 (181) T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 5454889999999999997644665432012222222 No 38 >>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase family protein; structural genomics, protein structure initiative; 1.80A {Aeromonas salmonicida subsp} (A:98-281) Probab=98.00 E-value=4.3e-06 Score=54.46 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=33.5 Q ss_pred CCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC Q ss_conf 243552899999999997277999999985998611 Q gi|254780152|r 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKF 74 (82) Q Consensus 39 ~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~ 74 (82) .|+.+|||++++++|++.|++..+++.+++|.|+.. T Consensus 1 Vn~~~VAE~~l~~~l~~~R~~~~~~~~~~~~~w~~~ 36 (184) T 3hg7_A 1 IFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSH 36 (184) T ss_dssp CCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 762999999999998876323567787764101222 No 39 >>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substrate-binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2h1s_A 2q50_A (A:108-297) Probab=97.99 E-value=6.4e-06 Score=53.48 Aligned_cols=43 Identities=35% Similarity=0.492 Sum_probs=36.5 Q ss_pred CCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC---CCEEEEC Q ss_conf 243552899999999997277999999985998611---2140017 Q gi|254780152|r 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKF---NFMGVEA 81 (82) Q Consensus 39 ~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~---~~~G~El 81 (82) .|+.+|||+++++||++.|++..+++.+++|.|... .+.|++| T Consensus 1 v~a~~VAE~~l~~iL~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l 46 (190) T 2gcg_A 1 VLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGL 46 (190) T ss_dssp TTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCC T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE T ss_conf 1112410332366655442057776666428843134434467331 No 40 >>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} (A:81-263) Probab=97.96 E-value=7.4e-06 Score=53.16 Aligned_cols=37 Identities=27% Similarity=0.347 Sum_probs=33.9 Q ss_pred CCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC Q ss_conf 2435528999999999972779999999859986112 Q gi|254780152|r 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFN 75 (82) Q Consensus 39 ~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~ 75 (82) +|+.+|||++++++|++.|++..+++.+++|.|+... T Consensus 1 ana~~VAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~ 37 (183) T 1qp8_A 1 SNADAVAEFALALLLAPYKRIIQYGEKXKRGDYGRDV 37 (183) T ss_dssp SSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCS T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 4667999999999999998887999999827754244 No 41 >>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} (A:100-285) Probab=97.95 E-value=8e-06 Score=52.97 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=34.1 Q ss_pred CCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC Q ss_conf 2435528999999999972779999999859986112 Q gi|254780152|r 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFN 75 (82) Q Consensus 39 ~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~ 75 (82) +|+.+|||++++++|++.|++..+++.+++|.|++.. T Consensus 1 ~na~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~ 37 (186) T 2ekl_A 1 ASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIE 37 (186) T ss_dssp TTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCC T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCC T ss_conf 7531056677775442000258887654238754455 No 42 >>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.95A {Pyrococcus horikoshii OT3} (A:95-286) Probab=97.94 E-value=6.8e-06 Score=53.34 Aligned_cols=37 Identities=27% Similarity=0.433 Sum_probs=34.3 Q ss_pred CCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC Q ss_conf 3243552899999999997277999999985998611 Q gi|254780152|r 38 FGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKF 74 (82) Q Consensus 38 ~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~ 74 (82) |+++.+|||++++++|++.|++..+++.+++|.|... T Consensus 1 G~~a~~VAE~~l~~~l~~~R~~~~~~~~~~~~~~~~~ 37 (192) T 2d0i_A 1 GLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESH 37 (192) T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCH T ss_pred CCCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCC T ss_conf 2344102578999999997455876411015873212 No 43 >>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenase, oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} (A:101-297) Probab=97.93 E-value=5.1e-06 Score=54.06 Aligned_cols=42 Identities=26% Similarity=0.398 Sum_probs=36.0 Q ss_pred CCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC-CCEEEEC Q ss_conf 43552899999999997277999999985998611-2140017 Q gi|254780152|r 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKF-NFMGVEA 81 (82) Q Consensus 40 ~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~-~~~G~El 81 (82) ++++|||++++++|++.|++..+++.+++|.|.+. .+.|+|| T Consensus 1 s~~aVAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~l 43 (197) T 1dxy_A 1 SPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKEL 43 (197) T ss_dssp CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCG T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 8279999999999999752599999987598575678775100 No 44 >>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Ralstonia solanacearum} (A:108-302) Probab=97.93 E-value=9.5e-06 Score=52.55 Aligned_cols=34 Identities=29% Similarity=0.518 Sum_probs=31.5 Q ss_pred CCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC Q ss_conf 5528999999999972779999999859986112 Q gi|254780152|r 42 ITTAEHAISLMLAIARQIPVANESTHKGKWEKFN 75 (82) Q Consensus 42 ~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~ 75 (82) +||||++++++|++.|++..+++.+++|.|++.. T Consensus 2 ~sVAE~~l~~~L~~~R~~~~~~~~~~~g~w~~~~ 35 (195) T 3gg9_A 2 VAPAELTWALVMAAQRRIPQYVASLKHGAWQQSG 35 (195) T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCC T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC T ss_conf 0467899999999865345443332047632245 No 45 >>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} (A:145-334) Probab=97.93 E-value=7.2e-06 Score=53.22 Aligned_cols=43 Identities=28% Similarity=0.461 Sum_probs=36.0 Q ss_pred CCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC--CEEEEC Q ss_conf 2435528999999999972779999999859986112--140017 Q gi|254780152|r 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFN--FMGVEA 81 (82) Q Consensus 39 ~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~--~~G~El 81 (82) +|+.+|||++++++|++.|++..+++.+++|.|+... ..|.+| T Consensus 1 ana~~vAE~~l~~il~~~R~~~~~~~~~~~~~w~~~~~~~~~~~l 45 (190) T 2nac_A 1 CNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDL 45 (190) T ss_dssp TTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCC T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 383899999999999998620487889871676444334334424 No 46 >>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepressor, transcription repressor; HET: NAD; 1.95A {Homo sapiens} (A:117-311) Probab=97.90 E-value=8.3e-06 Score=52.87 Aligned_cols=36 Identities=14% Similarity=0.201 Sum_probs=33.3 Q ss_pred CCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC Q ss_conf 243552899999999997277999999985998611 Q gi|254780152|r 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKF 74 (82) Q Consensus 39 ~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~ 74 (82) +|+.+|||++++++|++.|++..+++.+++|.|+.. T Consensus 1 Ana~sVAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~ 36 (195) T 1mx3_A 1 ASVEETADSTLCHILNLYRRATWLHQALREGTRVQS 36 (195) T ss_dssp TTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCS T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 587999999999999999877999998651764333 No 47 >>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} (A:1-78,A:260-290) Probab=97.89 E-value=1.3e-05 Score=51.81 Aligned_cols=57 Identities=19% Similarity=0.249 Sum_probs=46.9 Q ss_pred HHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHH Q ss_conf 238898599981656088333674124413643143243552899999999997277999 Q gi|254780152|r 3 SHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVA 62 (82) Q Consensus 3 ~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~ 62 (82) +.+||||+|++.++|+|++|++..+++.|.++|+.... +.+.++.+...-.|++... T Consensus 45 ~kaknLKwIQtiSAGVD~LPfe~Ip~~vIv~SNA~~~~---~~~~~~~~~~~~~~~~~~~ 101 (109) T 3gvx_A 45 VLGKRTKXIQAISAGVDHIDVNGIPENVVLCSNAXSGE---IXDIAIQLAFENVRNFFEG 101 (109) T ss_dssp CCCSSCCEEEECSSCCTTSCGGGSCTTSEEECCHBTTB---CCHHHHHHHHHHHHHHTC- T ss_pred HCCCCCEEEEECCEECCCCCHHHHHHCCEEEECCCHHH---HHHHHHHHHHHHHHHHHCC T ss_conf 50898609999988335017988972987995477999---9999999999999999879 No 48 >>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor binding domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* (A:119-301) Probab=97.89 E-value=9.3e-06 Score=52.59 Aligned_cols=43 Identities=23% Similarity=0.306 Sum_probs=36.5 Q ss_pred CCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC-CEEEEC Q ss_conf 2435528999999999972779999999859986112-140017 Q gi|254780152|r 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFN-FMGVEA 81 (82) Q Consensus 39 ~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~-~~G~El 81 (82) .|+.+|||++++++|++.|++..+++.+++|.|.+.. +.+.|| T Consensus 1 Vna~~vAE~~l~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~l 44 (183) T 3ba1_A 1 VLTDDVADLAIGLILAVLRRICECDKYVRRGAWKFGDFKLTTKF 44 (183) T ss_dssp TTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGCCCCCCCCC T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCCEE T ss_conf 65688888998888765304432002210366453555455311 No 49 >>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} (A:99-288) Probab=97.87 E-value=1.3e-05 Score=51.86 Aligned_cols=43 Identities=26% Similarity=0.453 Sum_probs=36.3 Q ss_pred CCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC---CEEEEC Q ss_conf 2435528999999999972779999999859986112---140017 Q gi|254780152|r 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFN---FMGVEA 81 (82) Q Consensus 39 ~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~---~~G~El 81 (82) .|+.+|||++++++|++.|++..+++.+++|.|.... +.|.+| T Consensus 1 ana~~VAE~~l~~~l~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l 46 (190) T 1gdh_A 1 GVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKL 46 (190) T ss_dssp SCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCC T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEE T ss_conf 6618999999998765533389988776506434566445566340 No 50 >>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B (A:112-306) Probab=97.80 E-value=8.4e-06 Score=52.85 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=33.3 Q ss_pred CCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC Q ss_conf 243552899999999997277999999985998611 Q gi|254780152|r 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKF 74 (82) Q Consensus 39 ~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~ 74 (82) +|+.||||++++++|++.|++..+++.+++|.|.+. T Consensus 1 Ana~sVAE~vl~~~L~~~R~~~~~~~~~~~~~w~~~ 36 (195) T 2w2k_A 1 AGDTATSDLALYLILSVFRLASYSERAARTGDPETF 36 (195) T ss_dssp TTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHH T ss_pred ECCCCCCEEEEEHHHHHHCCCCCCCCCCCCCCCCCC T ss_conf 024333047885123331134433100024754433 No 51 >>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, structural genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* (A:99-290) Probab=97.65 E-value=2.7e-05 Score=50.04 Aligned_cols=34 Identities=29% Similarity=0.461 Sum_probs=31.6 Q ss_pred CCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCC Q ss_conf 2435528999999999972779999999859986 Q gi|254780152|r 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWE 72 (82) Q Consensus 39 ~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~ 72 (82) .|+++|||++++++|++.|++..+++.+++++|. T Consensus 1 v~a~~VAE~~l~~~L~~~R~~~~~~~~~~~~~~~ 34 (192) T 2dbq_A 1 VLTDATADLAFALLLATARHVVKGDRFVRSGEWK 34 (192) T ss_dssp TTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHH T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 3443047788876677777789999998735222 No 52 >>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosphate ION, oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} (A:91-257) Probab=94.57 E-value=0.0018 Score=39.95 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=27.6 Q ss_pred CCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCC Q ss_conf 43552899999999997277999999985998 Q gi|254780152|r 40 NSITTAEHAISLMLAIARQIPVANESTHKGKW 71 (82) Q Consensus 40 ~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W 71 (82) |+++|||+++++||++.|++.......+-|.| T Consensus 1 Na~~vaE~~i~~~l~~~R~~~~~l~g~~vgii 32 (167) T 2o4c_A 1 NARGVVDYVLGCLLAMAEVRGADLAERTYGVV 32 (167) T ss_dssp THHHHHHHHHHHHHHHHHHHTCCGGGCEEEEE T ss_pred CHHHHHHHHHHHHHHHHHCCCHHHCCCCCCEE T ss_conf 66999999999766655212313217602367 No 53 >>3kbo_A Glyoxylate/hydroxypyruvate reductase A; NADP, cytoplasm, NAD, structural genomics; HET: NDP NDB EPE; 2.14A {Salmonella enterica subsp} (A:1-95,A:281-315) Probab=93.42 E-value=0.043 Score=32.38 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=30.5 Q ss_pred HHHCCCCCEEEECCCCCCCC------CHHHHHCCCCEEEECCCCCCCC Q ss_conf 02388985999816560883------3367412441364314324355 Q gi|254780152|r 2 LSHAKKMKVVGRAGIGTDNV------DLVVASRAGIVVMNTPFGNSIT 43 (82) Q Consensus 2 l~~~~~Lk~I~~~g~G~d~I------D~~~~~~~gI~v~n~~~~~~~s 43 (82) +-+.||||+|...|+|+||| |....- .+|+++-.-++-+.+ T Consensus 54 l~~~PnLk~I~slgAGVD~Ll~~~~l~~~~LP-~~vPivRlvDa~t~~ 100 (130) T 3kbo_A 54 XLAGRRLKAVFVLGAGVDAILSKLNAHPEXLD-ASIPLFRLEDAVTRP 100 (130) T ss_dssp HHTTCCCSEEEESSSCCHHHHTTTTTCGGGSC-TTSCEECCCCCCCCH T ss_pred HHCCCCCEEEEECCCCCCCCCHHHHHCCCCEE-CCCCCCCCCCCCCHH T ss_conf 73189973998799867545678896489665-144442233148799 No 54 >>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} (A:124-315) Probab=80.42 E-value=0.6 Score=26.04 Aligned_cols=33 Identities=3% Similarity=-0.156 Sum_probs=22.0 Q ss_pred CCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC Q ss_conf 552899999999997277999999985998611 Q gi|254780152|r 42 ITTAEHAISLMLAIARQIPVANESTHKGKWEKF 74 (82) Q Consensus 42 ~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~ 74 (82) ++|||++....+.++|.+...++..+.+.|.+. T Consensus 1 ~~~~~~~~~ae~~~~~~l~~~~~~~~~~~~~~~ 33 (192) T 1pjc_A 1 RSLPLLTPMSIIAGRLSVQFGARFLERQQGGRG 33 (192) T ss_dssp SCCTTTHHHHHHHHHHHHHHHHHHTSGGGTSCC T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE T ss_conf 985311157887536789999998665059965 No 55 >>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* (A:125-318) Probab=76.62 E-value=0.47 Score=26.64 Aligned_cols=23 Identities=13% Similarity=0.017 Sum_probs=19.2 Q ss_pred CCHHHHHHHHHHHHHHCHHHHHH Q ss_conf 55289999999999727799999 Q gi|254780152|r 42 ITTAEHAISLMLAIARQIPVANE 64 (82) Q Consensus 42 ~sVAE~~i~l~L~l~R~~~~~~~ 64 (82) .||||++++++|.++|+....+. T Consensus 7 ~~vaE~a~~~~l~~~r~~~~~~~ 29 (194) T 2vhw_A 7 APMSEVAGRLAAQVGAYHLMRTQ 29 (194) T ss_dssp HHHHHHHHHHHHHHHHHHTSGGG T ss_pred HHHHHHHHHHHHHHHHHHHHHHC T ss_conf 88665777789998776666404 No 56 >>2eez_A Alanine dehydrogenase; TTHA0216, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.71A {Thermus thermophilus HB8} (A:123-315) Probab=71.04 E-value=0.79 Score=25.36 Aligned_cols=26 Identities=12% Similarity=0.065 Sum_probs=20.9 Q ss_pred CCHHHHHHHHHHHHHHCHHHHHHHHH Q ss_conf 55289999999999727799999998 Q gi|254780152|r 42 ITTAEHAISLMLAIARQIPVANESTH 67 (82) Q Consensus 42 ~sVAE~~i~l~L~l~R~~~~~~~~~~ 67 (82) .||||++++++|.+.|++.......+ T Consensus 7 ~~vae~a~~~~l~~~r~~~~~~~~~~ 32 (193) T 2eez_A 7 VPMSEVAGRMAPQVGAQFLEKPKGGR 32 (193) T ss_dssp HHHHHHHHHHHHHHHHHHTSGGGTSC T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 76678888999999998521115875 No 57 >>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} (A:1-193) Probab=59.55 E-value=2.4 Score=22.70 Aligned_cols=23 Identities=9% Similarity=-0.000 Sum_probs=20.3 Q ss_pred HHHHHHCHHHHHHHHHCCCCCCC Q ss_conf 99997277999999985998611 Q gi|254780152|r 52 MLAIARQIPVANESTHKGKWEKF 74 (82) Q Consensus 52 ~L~l~R~~~~~~~~~~~g~W~~~ 74 (82) ||++.|+++..++.++++.|... T Consensus 1 ~l~~~r~~~~~~~~~~~~~~~~~ 23 (193) T 2uyy_A 1 MHHHHHHSSGVDLGTENLYFQSM 23 (193) T ss_dssp ----------------------- T ss_pred CCCCCCCCCCCCCCCCCHHHCCC T ss_conf 97533454556657640211322 No 58 >>1vqz_A Lipoate-protein ligase, putative; NP_345629.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.99A {Streptococcus pneumoniae TIGR4} (A:50-91) Probab=36.08 E-value=13 Score=18.57 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=15.9 Q ss_pred CCCCHHHHHCCCCEEEECC Q ss_conf 8833367412441364314 Q gi|254780152|r 19 DNVDLVVASRAGIVVMNTP 37 (82) Q Consensus 19 d~ID~~~~~~~gI~v~n~~ 37 (82) +-||+++|+++||.|.-=+ T Consensus 14 ~evn~~~~~~~~I~vvRR~ 32 (42) T 1vqz_A 14 EEINRDYVRENGIEVVRRI 32 (42) T ss_dssp GTBCHHHHHHHTCEEEECS T ss_pred HHHCHHHHHHCCCEEEEEE T ss_conf 7768899987698199996 No 59 >>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum 3D7} (A:227-394) Probab=35.17 E-value=2.9 Score=22.22 Aligned_cols=20 Identities=10% Similarity=-0.094 Sum_probs=13.7 Q ss_pred HHHHCHHHHHHHHHCCCCCC Q ss_conf 99727799999998599861 Q gi|254780152|r 54 AIARQIPVANESTHKGKWEK 73 (82) Q Consensus 54 ~l~R~~~~~~~~~~~g~W~~ 73 (82) +++|++..+++.+++|.|++ T Consensus 1 A~~R~~~~~~~~~~~g~w~~ 20 (168) T 1v8b_A 1 AVTKQKYDNVYGCRHSLPDG 20 (168) T ss_dssp SHHHHTTHHHHHHHHHHHHH T ss_pred CCHHHHHCCHHHHHHHHHHH T ss_conf 41544531023326888999 No 60 >>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydrolase, cytoplasm, NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei 1710B} PDB: 3glq_A* (A:247-409) Probab=34.00 E-value=7 Score=20.15 Aligned_cols=20 Identities=0% Similarity=-0.132 Sum_probs=15.8 Q ss_pred HHHHCHHHHHHHHHCCCCCC Q ss_conf 99727799999998599861 Q gi|254780152|r 54 AIARQIPVANESTHKGKWEK 73 (82) Q Consensus 54 ~l~R~~~~~~~~~~~g~W~~ 73 (82) +++|++..+++.+++|.|.. T Consensus 1 a~~R~~~~~~~~~~~g~w~~ 20 (163) T 3d64_A 1 SVTKSKFDNLYGCRESLVDG 20 (163) T ss_dssp SHHHHHHHHHHHHHTTHHHH T ss_pred HHHEEHHCCEEEEHHHHHHH T ss_conf 13214000324432678999 No 61 >>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE TAR; 2.10A {Bacillus halodurans} (A:126-269) Probab=28.31 E-value=12 Score=18.80 Aligned_cols=24 Identities=29% Similarity=0.253 Sum_probs=14.2 Q ss_pred ECCCCCCCCHHHHHHHHHHHHHHC Q ss_conf 314324355289999999999727 Q gi|254780152|r 35 NTPFGNSITTAEHAISLMLAIARQ 58 (82) Q Consensus 35 n~~~~~~~sVAE~~i~l~L~l~R~ 58 (82) |++++++.+|||+++..++..+.. T Consensus 3 ~~~~~~~~~va~~~~~~~~~~~~~ 26 (144) T 3d4o_A 3 DIAIYNSIPTAEGTIXXAIQHTDF 26 (144) T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSS T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 355640288899999999970796 No 62 >>2r7r_A RNA-dependent RNA polymerase; viral protein, RNA-dependent RNA polymerase, single subunit polymerase fold, fingers, PALM, thumb; 2.60A {Simian rotavirus} PDB: 2r7q_A 2r7s_A 2r7t_A 2r7u_A 2r7v_A 2r7w_A* 2r7x_A* 2r7o_A (A:869-921,A:1008-1074) Probab=23.22 E-value=60 Score=15.00 Aligned_cols=52 Identities=23% Similarity=0.463 Sum_probs=32.6 Q ss_pred CCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCC Q ss_conf 6560883336741244136431432435528999999999972779999999859986 Q gi|254780152|r 15 GIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWE 72 (82) Q Consensus 15 g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~ 72 (82) |.-.-+||+....-- .+...|--.-.+ ++.+||.++-++.-.+..+++|.|- T Consensus 47 gsrtyqiDfNS~dle--~lIriPfkgKiP----~vtFilhlyakL~iIN~aIk~g~wI 98 (120) T 2r7r_A 47 GSRTYQIDFNSPDLE--KLIRIPFKGKIP----AVTFILHLYAKLEVINYAIKNGSWI 98 (120) T ss_dssp CBCSBCCCTTCHHHH--HTEECCCSSCCH----HHHHHHHHHHHHHHHHHHHHHSSEE T ss_pred CCEEEEECCCCHHHH--HHHCCCCCCCCC----EEEEHHHHHHHHHHHHHHHCCCCEE T ss_conf 540111036863068--771164568887----0432688898899999987059679 No 63 >>3bh1_A UPF0371 protein DIP2346; structural genomics, unknown function, protein structure initiative, PSI-2; 2.51A {Corynebacterium diphtheriae NCTC13129} (A:345-507) Probab=22.28 E-value=23 Score=17.24 Aligned_cols=41 Identities=17% Similarity=0.128 Sum_probs=31.5 Q ss_pred HHHCCCCCEEEEC-CCCCCCCCHHHHHCCCCEEEECCCCCCC Q ss_conf 0238898599981-6560883336741244136431432435 Q gi|254780152|r 2 LSHAKKMKVVGRA-GIGTDNVDLVVASRAGIVVMNTPFGNSI 42 (82) Q Consensus 2 l~~~~~Lk~I~~~-g~G~d~ID~~~~~~~gI~v~n~~~~~~~ 42 (82) +++.|+||-...+ ++=....|....++.||.|+.-|.+... T Consensus 108 l~qL~~LkGcqaHsTvIls~~De~~frkLGi~vT~eP~y~~~ 149 (163) T 3bh1_A 108 LDQLKNLRGCDVHTTTILGSVDEGIFRNLGVLVTSDPKFQKN 149 (163) T ss_dssp HTTGGGGTTCEEEESSCCCHHHHHHHHHTTCEEEECSCCC-- T ss_pred HHHHHHCCCCCEEEEECCCHHHHHHHHHCCCCEECCCCCCCC T ss_conf 972233269842575368843699999648723127766611 Done!