Query gi|254780152|ref|YP_003064565.1| D-3-phosphoglycerate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Match_columns 82 No_of_seqs 110 out of 4711 Neff 6.8 Searched_HMMs 23785 Date Sun May 22 17:20:07 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780152.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 1ygy_A PGDH, D-3-phosphoglycer 99.9 4.4E-23 1.9E-27 147.4 7.5 81 1-81 60-140 (529) 2 2g76_A 3-PGDH, D-3-phosphoglyc 99.9 6.1E-23 2.6E-27 146.7 7.2 81 1-81 83-163 (335) 3 1sc6_A PGDH, D-3-phosphoglycer 99.9 2.6E-22 1.1E-26 143.2 6.8 82 1-82 63-144 (404) 4 3k5p_A D-3-phosphoglycerate de 99.9 3.1E-22 1.3E-26 142.8 7.1 82 1-82 74-155 (416) 5 1mx3_A CTBP1, C-terminal bindi 99.9 4.1E-22 1.7E-26 142.1 6.9 74 1-74 79-152 (347) 6 2nac_A NAD-dependent formate d 99.9 3.7E-22 1.6E-26 142.3 6.5 75 1-75 107-181 (393) 7 3ba1_A HPPR, hydroxyphenylpyru 99.8 1.1E-21 4.6E-26 139.7 6.5 81 1-81 81-162 (333) 8 3jtm_A Formate dehydrogenase, 99.8 7.8E-21 3.3E-25 135.0 6.8 81 1-81 80-162 (351) 9 2w2k_A D-mandelate dehydrogena 99.8 2.8E-21 1.2E-25 137.5 3.4 74 1-74 73-147 (348) 10 2d0i_A Dehydrogenase; structur 99.8 2.5E-20 1E-24 132.3 5.9 75 1-75 58-132 (333) 11 2j6i_A Formate dehydrogenase; 99.8 3.2E-20 1.3E-24 131.7 6.3 81 1-81 78-162 (364) 12 1dxy_A D-2-hydroxyisocaproate 99.8 2.5E-20 1E-24 132.2 5.4 80 2-81 61-143 (333) 13 1j4a_A D-LDH, D-lactate dehydr 99.8 4E-20 1.7E-24 131.1 5.1 80 2-81 63-144 (333) 14 2dbq_A Glyoxylate reductase; D 99.8 4.6E-20 2E-24 130.7 5.4 75 1-75 61-135 (334) 15 3evt_A Phosphoglycerate dehydr 99.8 1E-19 4.3E-24 128.9 6.0 78 4-81 58-135 (324) 16 2pi1_A D-lactate dehydrogenase 99.8 2.6E-19 1.1E-23 126.6 6.8 80 1-80 58-138 (334) 17 1xdw_A NAD+-dependent (R)-2-hy 99.8 1.1E-19 4.5E-24 128.8 4.3 80 2-81 62-144 (331) 18 2cuk_A Glycerate dehydrogenase 99.8 1.2E-18 5E-23 122.9 7.1 81 1-81 59-142 (311) 19 1wwk_A Phosphoglycerate dehydr 99.8 1.1E-18 4.6E-23 123.2 6.8 81 1-81 60-140 (307) 20 1gdh_A D-glycerate dehydrogena 99.8 1.6E-18 6.5E-23 122.3 7.4 81 1-81 60-144 (320) 21 2gcg_A Glyoxylate reductase/hy 99.7 2.4E-18 9.9E-23 121.3 6.9 80 2-81 70-153 (330) 22 1qp8_A Formate dehydrogenase; 99.7 1.5E-18 6.2E-23 122.5 5.4 73 1-74 44-116 (303) 23 3hg7_A D-isomer specific 2-hyd 99.7 3.4E-18 1.4E-22 120.5 6.9 75 1-76 61-135 (324) 24 2ekl_A D-3-phosphoglycerate de 99.7 5.5E-18 2.3E-22 119.3 7.2 79 1-81 62-140 (313) 25 3gg9_A D-3-phosphoglycerate de 99.7 8.1E-18 3.4E-22 118.4 7.3 74 1-75 65-142 (352) 26 3gvx_A Glycerate dehydrogenase 99.7 7E-18 2.9E-22 118.7 5.5 73 2-75 44-116 (290) 27 3kbo_A Glyoxylate/hydroxypyruv 99.6 1.4E-16 5.8E-21 111.6 4.1 74 2-75 54-133 (315) 28 2o4c_A Erythronate-4-phosphate 99.5 9.2E-15 3.9E-19 101.5 4.4 55 2-57 54-108 (380) 29 3oet_A Erythronate-4-phosphate 99.5 2E-14 8.6E-19 99.6 5.5 55 4-58 58-112 (381) 30 1wyz_A Putative S-adenosylmeth 23.2 22 0.00091 16.6 0.9 24 22-45 104-127 (242) No 1 >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosynthesis, structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Probab=99.88 E-value=4.4e-23 Score=147.44 Aligned_cols=81 Identities=44% Similarity=0.745 Sum_probs=78.1 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEE Q ss_conf 80238898599981656088333674124413643143243552899999999997277999999985998611214001 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~~~G~E 80 (82) +|+++|+||+|+++|+|+||||+++|+++||.|+|+|++++.+||||++++||++.|+++.+++.+++|.|.+..+.|.| T Consensus 60 ~l~~~p~LK~I~~~g~G~D~iD~~~a~~~gI~V~n~p~~~~~~vAE~~i~l~L~l~R~i~~~~~~~~~g~w~~~~~~~~~ 139 (529) T 1ygy_A 60 VLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTE 139 (529) T ss_dssp HHHTCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCC T ss_pred HHHCCCCCCEEEECCCCCCCCCHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 98159998099999832341168879868999998898787999999999999987636899888861872002556631 Q ss_pred C Q ss_conf 7 Q gi|254780152|r 81 A 81 (82) Q Consensus 81 l 81 (82) | T Consensus 140 L 140 (529) T 1ygy_A 140 I 140 (529) T ss_dssp C T ss_pred C T ss_conf 3 No 2 >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, serine metabolism; HET: NAD; 1.70A {Homo sapiens} Probab=99.88 E-value=6.1e-23 Score=146.65 Aligned_cols=81 Identities=53% Similarity=0.877 Sum_probs=78.2 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEE Q ss_conf 80238898599981656088333674124413643143243552899999999997277999999985998611214001 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~~~G~E 80 (82) +|+++|+||+|+++|+|+||||+++|+++||.|+|+|++++.+|||+++++||+++|+++.+++.+++|.|++..+.|.| T Consensus 83 vl~~~~~LK~I~~~g~G~D~iD~~~a~~~gI~v~n~p~~~~~~VAE~~i~~iL~l~R~i~~~~~~~~~g~w~~~~~~g~e 162 (335) T 2g76_A 83 VINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTE 162 (335) T ss_dssp HHHHCSSCCEEEESSSSCTTBCHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGGCBCC T ss_pred HHHCCCCCEEEEECCCCCCCCCHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCC T ss_conf 99319997699966854562669999867905742798763147999999999996167999999980987656767623 Q ss_pred C Q ss_conf 7 Q gi|254780152|r 81 A 81 (82) Q Consensus 81 l 81 (82) | T Consensus 163 L 163 (335) T 2g76_A 163 L 163 (335) T ss_dssp C T ss_pred C T ss_conf 5 No 3 >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Probab=99.86 E-value=2.6e-22 Score=143.16 Aligned_cols=82 Identities=37% Similarity=0.553 Sum_probs=78.4 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEE Q ss_conf 80238898599981656088333674124413643143243552899999999997277999999985998611214001 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~~~G~E 80 (82) +|+++|+||+|+++|+|+||||+++|+++||.|+|+|++++.+|||++++++|++.|++..++..++++.|.+..+.|.| T Consensus 63 ~l~~~~~Lk~I~~~g~G~d~Id~~~a~~~GI~V~n~pg~n~~aVaE~~l~l~l~~~R~~~~~~~~~~~~~w~~~~~~~~e 142 (404) T 1sc6_A 63 VINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFE 142 (404) T ss_dssp HHHHCSSCCEEEECSSCCTTBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCC T ss_pred HHHCCCCCEEEEECCCCCCCHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 99508987499994753364100301033201463157544411678877542110013555556542763223565544 Q ss_pred CC Q ss_conf 78 Q gi|254780152|r 81 AG 82 (82) Q Consensus 81 lG 82 (82) |. T Consensus 143 l~ 144 (404) T 1sc6_A 143 AR 144 (404) T ss_dssp ST T ss_pred CC T ss_conf 43 No 4 >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infectious disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Probab=99.86 E-value=3.1e-22 Score=142.79 Aligned_cols=82 Identities=33% Similarity=0.527 Sum_probs=78.2 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEE Q ss_conf 80238898599981656088333674124413643143243552899999999997277999999985998611214001 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~~~G~E 80 (82) +|+++|+||+|+++|+|+||||+++|+++||.|+|+|++++.+|||++++++|+++|++...+..+++|.|++..+.|.| T Consensus 74 ~l~~~~~Lk~I~~~gaG~d~Id~~~~~~~gI~V~n~pg~na~aVAE~~i~~iL~l~R~i~~~~~~~~~~~w~~~~~~~~~ 153 (416) T 3k5p_A 74 IFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSRE 153 (416) T ss_dssp HHHHCTTCCEEEECSSCCTTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTCCC T ss_pred HHHCCCCCCEEEECCEECCCCCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEE T ss_conf 99339997299989862130069989978979997698662289999999988653102566545431771103667624 Q ss_pred CC Q ss_conf 78 Q gi|254780152|r 81 AG 82 (82) Q Consensus 81 lG 82 (82) +. T Consensus 154 l~ 155 (416) T 3k5p_A 154 VR 155 (416) T ss_dssp ST T ss_pred EC T ss_conf 04 No 5 >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepressor, transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Probab=99.86 E-value=4.1e-22 Score=142.06 Aligned_cols=74 Identities=26% Similarity=0.386 Sum_probs=71.1 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC Q ss_conf 80238898599981656088333674124413643143243552899999999997277999999985998611 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKF 74 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~ 74 (82) +|+++|+||+|+++|+|+||||+++|+++||.|+|+|++++.+|||++++++|++.|++..+++.+++|.|.+. T Consensus 79 ~l~~~p~LK~I~~~g~G~D~iD~~~~~~~gI~V~n~pg~~~~~VAE~~l~liL~~~R~i~~~~~~~~~g~~~~~ 152 (347) T 1mx3_A 79 DLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQS 152 (347) T ss_dssp HHTTCSSCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCS T ss_pred HHHCCCCCCEEEECCEECCCCCHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC T ss_conf 99539986179999862251559989878999997998587999999999999998753899886532764222 No 6 >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Probab=99.86 E-value=3.7e-22 Score=142.33 Aligned_cols=75 Identities=33% Similarity=0.550 Sum_probs=71.8 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC Q ss_conf 802388985999816560883336741244136431432435528999999999972779999999859986112 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFN 75 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~ 75 (82) +|+++|+||+|+++|+|+||||+++|+++||.|+|+|++++.+||||+++++|++.|++..+++.+++|.|.+.. T Consensus 107 ~l~~ap~LK~I~~~g~G~D~IDl~aa~~~gI~V~n~~g~~~~sVAE~~i~liL~l~R~~~~~~~~~~~g~w~~~~ 181 (393) T 2nac_A 107 RIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIAD 181 (393) T ss_dssp HHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHH T ss_pred HHHCCCCCEEEEECCEECCHHCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC T ss_conf 993699980999898331320598898689999988984819999999999999986330889999808975233 No 7 >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Probab=99.85 E-value=1.1e-21 Score=139.73 Aligned_cols=81 Identities=27% Similarity=0.402 Sum_probs=74.4 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC-CCEEE Q ss_conf 80238898599981656088333674124413643143243552899999999997277999999985998611-21400 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKF-NFMGV 79 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~-~~~G~ 79 (82) +|+++|+||+|+++|+|+||||+++|+++||.|+|+|++++.+|||+++++||++.|++..++..++++.|.+. ...|. T Consensus 81 ~l~~~p~LK~I~~~g~G~D~ID~~~~~~~gI~V~n~pg~~~~~VAE~al~liLal~R~~~~~~~~~~~~~~~~~~~~~~~ 160 (333) T 3ba1_A 81 LIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKFGDFKLTT 160 (333) T ss_dssp HHHHCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGCCCCCCC T ss_pred HHHCCCCCCEEEECCCCCCCCCHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCC T ss_conf 99439976279889842250558889868978970898678999999999999874022455555421664535554554 Q ss_pred EC Q ss_conf 17 Q gi|254780152|r 80 EA 81 (82) Q Consensus 80 El 81 (82) +| T Consensus 161 ~l 162 (333) T 3ba1_A 161 KF 162 (333) T ss_dssp CC T ss_pred EE T ss_conf 23 No 8 >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Probab=99.82 E-value=7.8e-21 Score=135.01 Aligned_cols=81 Identities=27% Similarity=0.462 Sum_probs=74.8 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC--CCEE Q ss_conf 80238898599981656088333674124413643143243552899999999997277999999985998611--2140 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKF--NFMG 78 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~--~~~G 78 (82) +|+++||||+|+++|+|+||||+++|+++||.|+|+|++++.+|||+++++||++.|++...++.+++|.|.+. .+.| T Consensus 80 ~l~~~p~LK~I~~~~~G~D~id~~~~~~~gI~V~n~~g~~~~~vAE~~l~~iL~~~r~~~~~~~~~~~g~~~~~~~~~~~ 159 (351) T 3jtm_A 80 RIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRA 159 (351) T ss_dssp HHHHCSSCCEEEESSSCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTC T ss_pred HHHCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 99449997079886860565254433679869998998786999999999999997521577766432863234556663 Q ss_pred EEC Q ss_conf 017 Q gi|254780152|r 79 VEA 81 (82) Q Consensus 79 ~El 81 (82) +|| T Consensus 160 ~~L 162 (351) T 3jtm_A 160 YDL 162 (351) T ss_dssp CCS T ss_pred EEC T ss_conf 311 No 9 >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Probab=99.82 E-value=2.8e-21 Score=137.48 Aligned_cols=74 Identities=27% Similarity=0.413 Sum_probs=70.1 Q ss_pred CHHHCC-CCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC Q ss_conf 802388-98599981656088333674124413643143243552899999999997277999999985998611 Q gi|254780152|r 1 MLSHAK-KMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKF 74 (82) Q Consensus 1 il~~~~-~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~ 74 (82) +|+++| +||+|+++|+|+||||+++|+++||.|+|+|++++.+|||+++++||+++|++..+++.+|+|.|.+. T Consensus 73 ~l~~~p~~Lk~I~~~~~G~d~iD~~~~~~~gI~v~n~~~~~~~~VAE~~l~liL~~~R~~~~~~~~~~~~~w~~~ 147 (348) T 2w2k_A 73 LISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETF 147 (348) T ss_dssp HHTTSCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHH T ss_pred HHHHCCCCCEEEEECCCCCCHHCHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCC T ss_conf 997331172799998836650069999869938997898783479999999999853111566666441664323 No 10 >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.95A {Pyrococcus horikoshii OT3} Probab=99.80 E-value=2.5e-20 Score=132.26 Aligned_cols=75 Identities=31% Similarity=0.495 Sum_probs=71.3 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC Q ss_conf 802388985999816560883336741244136431432435528999999999972779999999859986112 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFN 75 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~ 75 (82) +|+++|+||+|+++|+|+||||+++|+++||.|+|+|++++.+|||+++++||++.|++..+++.+++|.|.+.. T Consensus 58 ~l~~~~~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~~~~~~~VAE~~l~~iL~l~R~l~~~~~~~~~g~~~~~~ 132 (333) T 2d0i_A 58 VLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHA 132 (333) T ss_dssp HHTTCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHH T ss_pred HHHCCCCCEEEEECCCCCCCCCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCC T ss_conf 991699980998898133401799998679999978986647899999999999972635766665348732111 No 11 >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Probab=99.80 E-value=3.2e-20 Score=131.66 Aligned_cols=81 Identities=31% Similarity=0.462 Sum_probs=73.0 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCC--CEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC--C Q ss_conf 802388985999816560883336741244--136431432435528999999999972779999999859986112--1 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAG--IVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFN--F 76 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~g--I~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~--~ 76 (82) +|+++||||+|+++|+|+||||+++|+++| |.|+|+|++++.+|||++++++|++.|++..++..+++|.|.+.. . T Consensus 78 ~l~~a~~LK~I~~~~~G~d~iD~~~~~~~G~~I~v~n~~g~~a~~VAE~~l~l~L~l~R~~~~~~~~~~~~~w~~~~~~~ 157 (364) T 2j6i_A 78 RIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAK 157 (364) T ss_dssp HHHHCTTCCEEEESSSCCTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHT T ss_pred HHHCCCCCCEEEECCCCCCCCCHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCC T ss_conf 99319997099999801351059999971992799978998979999999999999984629999999837654333466 Q ss_pred EEEEC Q ss_conf 40017 Q gi|254780152|r 77 MGVEA 81 (82) Q Consensus 77 ~G~El 81 (82) .|.|| T Consensus 158 ~~~~l 162 (364) T 2j6i_A 158 DAYDI 162 (364) T ss_dssp TCCCS T ss_pred CCCCC T ss_conf 75345 No 12 >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenase, oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Probab=99.80 E-value=2.5e-20 Score=132.24 Aligned_cols=80 Identities=28% Similarity=0.418 Sum_probs=72.1 Q ss_pred HHH--CCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC-CCEE Q ss_conf 023--8898599981656088333674124413643143243552899999999997277999999985998611-2140 Q gi|254780152|r 2 LSH--AKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKF-NFMG 78 (82) Q Consensus 2 l~~--~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~-~~~G 78 (82) |++ +++||+|+++|+|+||||+++|+++||.|+|+|++++.+|||++++++|++.|++..++..++.|.|.+. .+.| T Consensus 61 i~~~~~~nLK~I~~~~~G~D~ID~~~~~~~gI~v~n~~g~~a~aVAE~~l~~iL~l~R~~~~~~~~~~~g~~~~~~~~~~ 140 (333) T 1dxy_A 61 FEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIG 140 (333) T ss_dssp HHHHHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCC T ss_pred HHHCCCCCCEEEEECCCCCCCCCHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC T ss_conf 97373269879998982567459889962987999799848378999999999987540489999876165445566565 Q ss_pred EEC Q ss_conf 017 Q gi|254780152|r 79 VEA 81 (82) Q Consensus 79 ~El 81 (82) .|| T Consensus 141 ~~L 143 (333) T 1dxy_A 141 KEL 143 (333) T ss_dssp CCG T ss_pred CCC T ss_conf 114 No 13 >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Probab=99.79 E-value=4e-20 Score=131.11 Aligned_cols=80 Identities=24% Similarity=0.277 Sum_probs=73.3 Q ss_pred HHHCC--CCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEE Q ss_conf 02388--9859998165608833367412441364314324355289999999999727799999998599861121400 Q gi|254780152|r 2 LSHAK--KMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGV 79 (82) Q Consensus 2 l~~~~--~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~~~G~ 79 (82) |+++| +||+|+++|+|+||||+++|+++||.|+|+|++++.+|||++++++|++.|++..+++.+++++|.+..+.|. T Consensus 63 l~~~~~~~Lk~I~~~~~G~d~iD~~~~~~~gI~v~n~~~~~~~~vAE~~~~~il~~~R~~~~~~~~~~~~~~~~~~~~g~ 142 (333) T 1j4a_A 63 LQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGR 142 (333) T ss_dssp HHHHHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBC T ss_pred HHHCCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCE T ss_conf 98544079669998876246314999987895899789878689999999999998654258999998278764787752 Q ss_pred EC Q ss_conf 17 Q gi|254780152|r 80 EA 81 (82) Q Consensus 80 El 81 (82) || T Consensus 143 ~l 144 (333) T 1j4a_A 143 EV 144 (333) T ss_dssp CG T ss_pred EE T ss_conf 40 No 14 >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, structural genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Probab=99.79 E-value=4.6e-20 Score=130.75 Aligned_cols=75 Identities=33% Similarity=0.531 Sum_probs=71.4 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC Q ss_conf 802388985999816560883336741244136431432435528999999999972779999999859986112 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFN 75 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~ 75 (82) +|+++|+||+|+++|+|+||||+++|.++||.|+|+|++++.+|||+++++||++.|++..+++.+++|.|.+.. T Consensus 61 ~l~~~p~LK~I~~~~~G~d~id~~~~~~~~I~v~n~~g~~~~~VAE~~l~~iL~l~R~l~~~~~~~~~g~w~~~~ 135 (334) T 2dbq_A 61 VFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRG 135 (334) T ss_dssp HHHTCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTT T ss_pred HHHCCCCCCEEEECCCCCCCCCHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 994499983999888644500689998669653328987740448999999999865546889999808753355 No 15 >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Probab=99.78 E-value=1e-19 Score=128.88 Aligned_cols=78 Identities=21% Similarity=0.196 Sum_probs=70.0 Q ss_pred HCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEEC Q ss_conf 388985999816560883336741244136431432435528999999999972779999999859986112140017 Q gi|254780152|r 4 HAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVEA 81 (82) Q Consensus 4 ~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~~~G~El 81 (82) ..|+||+|++.|+|+||||+++|+++||.|+|+|++++.+|||+++++||++.|++..+....+.+.|.+..+.+.|| T Consensus 58 ~~~~Lk~I~~~~aG~D~id~~~~~~~gI~v~n~~g~~~~~VAE~~l~~~L~~~R~~~~~~~~~~~~~~~~~~~~~~~l 135 (324) T 3evt_A 58 PTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPMTTSTL 135 (324) T ss_dssp TTCCCCEEECSSSCCTTSCHHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSSCCCCS T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCE T ss_conf 658871999898340621499998789689951874789999999999999985352889987505533367666530 No 16 >2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure, structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex aeolicus VF5} PDB: 3kb6_A* Probab=99.78 E-value=2.6e-19 Score=126.63 Aligned_cols=80 Identities=21% Similarity=0.433 Sum_probs=72.8 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC-CEEE Q ss_conf 802388985999816560883336741244136431432435528999999999972779999999859986112-1400 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFN-FMGV 79 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~-~~G~ 79 (82) +|+++|+||+|+++|+|+||||+++|.++||.|+|+|++++.+|||++++++|++.|++..+.+.++.+.|.+.. ..|. T Consensus 58 ~l~~~p~Lk~I~~~~aG~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~l~~il~~~r~l~~~~~~~~~~~~~~~~~~~~~ 137 (334) T 2pi1_A 58 LLSKMPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSEILAR 137 (334) T ss_dssp HHTTCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCGGGCBC T ss_pred HHHCCCCCCEEEECCCCCCCCCHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 99459987089888850575486588739918995798580899999999988875233100221123553222343442 Q ss_pred E Q ss_conf 1 Q gi|254780152|r 80 E 80 (82) Q Consensus 80 E 80 (82) + T Consensus 138 ~ 138 (334) T 2pi1_A 138 E 138 (334) T ss_dssp C T ss_pred E T ss_conf 1 No 17 >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Probab=99.77 E-value=1.1e-19 Score=128.76 Aligned_cols=80 Identities=23% Similarity=0.230 Sum_probs=71.4 Q ss_pred HHHCCC--CCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC-CEE Q ss_conf 023889--85999816560883336741244136431432435528999999999972779999999859986112-140 Q gi|254780152|r 2 LSHAKK--MKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFN-FMG 78 (82) Q Consensus 2 l~~~~~--Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~-~~G 78 (82) |+.+|+ ||+|+++|+|+||||+++|+++||.|+|+|++++.+|||++++++|++.|++..+++.+++|.|.+.. ..| T Consensus 62 l~~~~~l~lK~I~~~~aG~D~iD~~~~~~~gI~v~n~~g~~~~~VAE~~l~~iL~~~R~~~~~~~~~~~~~~~~~~~~~~ 141 (331) T 1xdw_A 62 LDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFS 141 (331) T ss_dssp HHHHHHHTCCEEEESSSCCTTBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCC T ss_pred HHHCCCCCCCEEEECCCCCCCCCHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 97452059709998883665007998973988999799988167999999999999877677655543135433355454 Q ss_pred EEC Q ss_conf 017 Q gi|254780152|r 79 VEA 81 (82) Q Consensus 79 ~El 81 (82) .|| T Consensus 142 ~~l 144 (331) T 1xdw_A 142 KEV 144 (331) T ss_dssp CCG T ss_pred CEE T ss_conf 143 No 18 >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus HB8} Probab=99.75 E-value=1.2e-18 Score=122.95 Aligned_cols=81 Identities=31% Similarity=0.492 Sum_probs=74.6 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCC---CCCE Q ss_conf 8023889859998165608833367412441364314324355289999999999727799999998599861---1214 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEK---FNFM 77 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~---~~~~ 77 (82) +|+++|+||+|+++|+|+||||+++|+++||.|+|+|++++.+|||++++++|+++|++..+++.+++|.|.+ ..+. T Consensus 59 ~l~~~pnLK~I~~~~aG~D~Id~~~~~~~gi~v~n~~~~~~~~vaE~~~~lll~l~r~i~~~~~~~~~~~w~~~~~~~~~ 138 (311) T 2cuk_A 59 VMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLL 138 (311) T ss_dssp HHHHSTTCCEEECSSSCCTTBCHHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTC T ss_pred HHHCCCCCEEEEECCCCCCCCCHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCC T ss_conf 99339998599988830375077789866946741799740667777766668877153178999871753335754545 Q ss_pred EEEC Q ss_conf 0017 Q gi|254780152|r 78 GVEA 81 (82) Q Consensus 78 G~El 81 (82) |+|| T Consensus 139 g~~l 142 (311) T 2cuk_A 139 GLDL 142 (311) T ss_dssp BCCC T ss_pred CCCC T ss_conf 5324 No 19 >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii OT3} Probab=99.75 E-value=1.1e-18 Score=123.19 Aligned_cols=81 Identities=41% Similarity=0.688 Sum_probs=77.2 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEE Q ss_conf 80238898599981656088333674124413643143243552899999999997277999999985998611214001 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~~~G~E 80 (82) +|+++|+||+|++.++|+||||.+.|.++||.|+|+|++++.+|||++++++|++.|++..+++.+++|.|.+..+.|.| T Consensus 60 ~l~~~p~LK~I~~~~aG~d~id~~~~~~~~I~v~n~~g~~~~~VAE~~l~~iL~~~R~~~~~~~~~~~~~~~~~~~~~~~ 139 (307) T 1wwk_A 60 VIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIE 139 (307) T ss_dssp HHTTCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTCCBCC T ss_pred HHHCCCCCEEEEECCCCCCCCCHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCEE T ss_conf 99429998799988852675178989733946745898558999999999999998523367899983986545777440 Q ss_pred C Q ss_conf 7 Q gi|254780152|r 81 A 81 (82) Q Consensus 81 l 81 (82) | T Consensus 140 l 140 (307) T 1wwk_A 140 L 140 (307) T ss_dssp C T ss_pred C T ss_conf 4 No 20 >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Probab=99.75 E-value=1.6e-18 Score=122.32 Aligned_cols=81 Identities=27% Similarity=0.469 Sum_probs=72.7 Q ss_pred CHHHCC-CCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC---CC Q ss_conf 802388-98599981656088333674124413643143243552899999999997277999999985998611---21 Q gi|254780152|r 1 MLSHAK-KMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKF---NF 76 (82) Q Consensus 1 il~~~~-~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~---~~ 76 (82) +|+++| +||+|+++|+|+||||+++|+++||.|+|+|++++.+|||++++++|++.|++..+++.++++.|.++ .+ T Consensus 60 ~l~~~~~~LK~I~~~~~G~D~id~~~~~~~gI~v~n~~~~~~~~vAE~~l~l~l~~~R~i~~~~~~~~~~~~~~~~~~~~ 139 (320) T 1gdh_A 60 VIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLEL 139 (320) T ss_dssp HHHHSCTTCCEEEEESSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTT T ss_pred HHHHCCCCCCEEEECCEECCHHCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC T ss_conf 99716688728999987445126999997799999789967199999999999997523466655443212465543342 Q ss_pred EEEEC Q ss_conf 40017 Q gi|254780152|r 77 MGVEA 81 (82) Q Consensus 77 ~G~El 81 (82) .|.|| T Consensus 140 ~g~~l 144 (320) T 1gdh_A 140 VGEKL 144 (320) T ss_dssp CBCCC T ss_pred CCEEE T ss_conf 54262 No 21 >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substrate-binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Probab=99.74 E-value=2.4e-18 Score=121.33 Aligned_cols=80 Identities=34% Similarity=0.486 Sum_probs=72.0 Q ss_pred HHHC-CCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC---CE Q ss_conf 0238-8985999816560883336741244136431432435528999999999972779999999859986112---14 Q gi|254780152|r 2 LSHA-KKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFN---FM 77 (82) Q Consensus 2 l~~~-~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~---~~ 77 (82) |+++ |+||+|+++|+|+||||+++|+++||.|+|+|++++.+|||+++++||+++|++...++.+++|.|.... .. T Consensus 70 l~~~~~~LK~I~~~~aG~d~id~~~~~~~gi~v~~~~~~~~~~vae~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~ 149 (330) T 2gcg_A 70 LDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLC 149 (330) T ss_dssp HHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSC T ss_pred HHHCCCCCEEEEECCCCCCCCCHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC T ss_conf 97008995499899854360179999867988997898423889999999998876323899999972996423432446 Q ss_pred EEEC Q ss_conf 0017 Q gi|254780152|r 78 GVEA 81 (82) Q Consensus 78 G~El 81 (82) |++| T Consensus 150 ~~~l 153 (330) T 2gcg_A 150 GYGL 153 (330) T ss_dssp BCCC T ss_pred CCEE T ss_conf 7421 No 22 >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Probab=99.74 E-value=1.5e-18 Score=122.46 Aligned_cols=73 Identities=21% Similarity=0.263 Sum_probs=69.0 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC Q ss_conf 80238898599981656088333674124413643143243552899999999997277999999985998611 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKF 74 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~ 74 (82) +|+++|+||+|++.|+|+||||+++|++ +|.|+|+|++++.+|||++++++|++.|++..+++.++++.|.+. T Consensus 44 ~l~~~p~Lk~I~~~~aG~D~id~~~~~~-~i~v~~~~g~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~~~~~~~ 116 (303) T 1qp8_A 44 ELAKMPRLKFIQVVTAGLDHLPWESIPP-HVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRD 116 (303) T ss_dssp HHHHCTTCCCEEBSSSCCTTSCCTTSCT-TSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC T ss_pred HHHHCCCCCEEEECCCCCCCCCHHHHHC-CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 9960999709989987626036878867-988997899776999999999999999888799999982775434 No 23 >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase family protein; structural genomics, protein structure initiative; 1.80A {Aeromonas salmonicida subsp} Probab=99.73 E-value=3.4e-18 Score=120.45 Aligned_cols=75 Identities=20% Similarity=0.258 Sum_probs=69.9 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCC Q ss_conf 8023889859998165608833367412441364314324355289999999999727799999998599861121 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNF 76 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~~ 76 (82) +|+++|+||+|++.|+|+|+ |++++.++||.|+|+|++++.+|||++++++|++.|+++.+++.+++|.|.+... T Consensus 61 ~l~~~~~Lk~I~~~~aG~D~-~~~~~~~~gI~v~n~~g~~a~~VAE~~l~~iL~l~R~~~~~~~~~~~~~W~~~~~ 135 (324) T 3hg7_A 61 LLAKANKLSWFQSTYAGVDV-LLDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPY 135 (324) T ss_dssp GGGGCTTCCEEEESSSCCGG-GSCTTSCCSSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCC T ss_pred HHHCCCCCEEEEECCEECCC-CHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCC T ss_conf 99349996599988855072-0165887898899689856399999999999998521559999987512455787 No 24 >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Probab=99.73 E-value=5.5e-18 Score=119.28 Aligned_cols=79 Identities=33% Similarity=0.516 Sum_probs=72.7 Q ss_pred CHHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCEEEE Q ss_conf 80238898599981656088333674124413643143243552899999999997277999999985998611214001 Q gi|254780152|r 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80 (82) Q Consensus 1 il~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~~~G~E 80 (82) +|+++|+||+|+++++|+||+|+++++++||.|+|+|++++.+|||++++++|++.|++..+++.+++|.|.+. .|.| T Consensus 62 ~l~~~~~Lk~I~~~~~G~d~id~~~~~~~~i~v~~~~g~~~~~vaE~~~~~~l~l~r~~~~~~~~~~~g~~~~~--~~~~ 139 (313) T 2ekl_A 62 VIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKKI--EGLE 139 (313) T ss_dssp HHHHCTTCCEEEECSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCC--CCCC T ss_pred HHHHCCCCEEEEECCCCCCCCCCHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCC--CCCC T ss_conf 99519897799889816451651015543701563798771999999999999875143778887534885556--7766 Q ss_pred C Q ss_conf 7 Q gi|254780152|r 81 A 81 (82) Q Consensus 81 l 81 (82) | T Consensus 140 L 140 (313) T 2ekl_A 140 L 140 (313) T ss_dssp C T ss_pred C T ss_conf 7 No 25 >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Ralstonia solanacearum} Probab=99.72 E-value=8.1e-18 Score=118.35 Aligned_cols=74 Identities=26% Similarity=0.478 Sum_probs=68.9 Q ss_pred CHHHCCCCCEEEECCC----CCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC Q ss_conf 8023889859998165----60883336741244136431432435528999999999972779999999859986112 Q gi|254780152|r 1 MLSHAKKMKVVGRAGI----GTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFN 75 (82) Q Consensus 1 il~~~~~Lk~I~~~g~----G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~ 75 (82) +|+++|+||+|+++|+ |+||||+++|+++||.|+|+|+++ .+|||++++++|++.|++..+++.+++|.|.+.. T Consensus 65 ll~~~p~Lk~I~~~g~~~~~G~d~IDl~~~~~~gI~v~n~~g~~-~avAE~~~~lil~l~r~i~~~~~~~~~g~~~~~~ 142 (352) T 3gg9_A 65 LLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGSP-VAPAELTWALVMAAQRRIPQYVASLKHGAWQQSG 142 (352) T ss_dssp HHTTCTTCCEEEESSCCCCSSSCSBCHHHHHHHTCEEECCCCCS-HHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCC T ss_pred HHHHCHHCCEEEEECCCCCCCCCCCCHHHHHHCCCEEECCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC T ss_conf 99724416504773333676876233999986999998789987-5068999999999865577877774237522245 No 26 >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Probab=99.71 E-value=7e-18 Score=118.72 Aligned_cols=73 Identities=26% Similarity=0.332 Sum_probs=66.6 Q ss_pred HHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC Q ss_conf 02388985999816560883336741244136431432435528999999999972779999999859986112 Q gi|254780152|r 2 LSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFN 75 (82) Q Consensus 2 l~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~ 75 (82) +..+|+||+|++.|+|+||||+++|++++|. ++.|+.++.+|||++++++|++.|++..+++.+++|.|++.. T Consensus 44 ~~~~~~LK~I~~~~aG~D~ID~~~~~~~~i~-~~~~g~~~~~VAE~~l~~iL~~~R~i~~~~~~~~~~~w~~~~ 116 (290) T 3gvx_A 44 YVLGKRTKMIQAISAGVDHIDVNGIPENVVL-CSNAGAYSISVAEHAFALLLAHAKNILENNELMKAGIFRQSP 116 (290) T ss_dssp CCCCSSCCEEEECSSCCTTSCGGGSCTTSEE-ECCHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC T ss_pred HHHCCCCEEEEECCEECCCCCHHHHHHCCEE-EECCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC T ss_conf 9518986299989762150049889739989-987997707999999999999982826878887607555666 No 27 >3kbo_A Glyoxylate/hydroxypyruvate reductase A; NADP, cytoplasm, NAD, structural genomics; HET: NDP NDB EPE; 2.14A {Salmonella enterica subsp} Probab=99.62 E-value=1.4e-16 Score=111.58 Aligned_cols=74 Identities=16% Similarity=0.250 Sum_probs=67.8 Q ss_pred HHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCC------CCCHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCC Q ss_conf 023889859998165608833367412441364314324------35528999999999972779999999859986112 Q gi|254780152|r 2 LSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGN------SITTAEHAISLMLAIARQIPVANESTHKGKWEKFN 75 (82) Q Consensus 2 l~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~------~~sVAE~~i~l~L~l~R~~~~~~~~~~~g~W~~~~ 75 (82) +.++|+||+|++.++|+||||+++|+++||.++|+|+++ +.+|||++++++|++.|++..+++.++++.|.+.. T Consensus 54 l~~~p~Lk~I~~~~aG~D~id~~~~~~~gi~v~n~p~~~~~~~~~~~~vAE~~l~~~l~l~R~~~~~~~~~~~~~w~~~~ 133 (315) T 3kbo_A 54 MLAGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPLP 133 (315) T ss_dssp HHTTCCCSEEEESSSCCHHHHTTTTTCGGGSCTTSCEECCCCTTHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCC T ss_pred HHCCCCCEEEEECCCCCCCCCHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCC T ss_conf 74189982999898154502668786678632077755565510399999999999999985908999999828787888 No 28 >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosphate ION, oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Probab=99.50 E-value=9.2e-15 Score=101.48 Aligned_cols=55 Identities=31% Similarity=0.442 Sum_probs=51.8 Q ss_pred HHHCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHH Q ss_conf 02388985999816560883336741244136431432435528999999999972 Q gi|254780152|r 2 LSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIAR 57 (82) Q Consensus 2 l~~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R 57 (82) |+ +++||+|+++++|+||||+++|+++||.|+|+|++++.+|||++++++|++.| T Consensus 54 l~-~~~Lk~I~~~~~G~D~ID~~~~~~~gI~v~n~pg~na~aVAE~vl~~~l~~~r 108 (380) T 2o4c_A 54 LA-GSPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAE 108 (380) T ss_dssp HT-TSCCCEEEECSSCSTTBCHHHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHH T ss_pred HC-CCCCEEEEECCCCCCCCCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHH T ss_conf 75-89985998887222403899998789579957986808999999983335666 No 29 >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Probab=99.49 E-value=2e-14 Score=99.58 Aligned_cols=55 Identities=33% Similarity=0.408 Sum_probs=51.1 Q ss_pred HCCCCCEEEECCCCCCCCCHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHC Q ss_conf 3889859998165608833367412441364314324355289999999999727 Q gi|254780152|r 4 HAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQ 58 (82) Q Consensus 4 ~~~~Lk~I~~~g~G~d~ID~~~~~~~gI~v~n~~~~~~~sVAE~~i~l~L~l~R~ 58 (82) .+++||+|+++|+|+||||+++|+++||.|+|+|++++.+|||+++++++.+.|+ T Consensus 58 ~~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~n~~g~~a~aVAe~~l~~~l~~~~~ 112 (381) T 3oet_A 58 SGTPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAER 112 (381) T ss_dssp TTSCCCEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHH T ss_pred CCCCCEEEEECCCCCCCCCHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHH T ss_conf 5899849998980245007888960943899567646899999999987899874 No 30 >1wyz_A Putative S-adenosylmethionine-dependent methytransferase; northeast structural genomics consortium, BTR28; 2.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.90.1.1 Probab=23.17 E-value=22 Score=16.60 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=19.3 Q ss_pred CHHHHHCCCCEEEECCCCCCCCHH Q ss_conf 336741244136431432435528 Q gi|254780152|r 22 DLVVASRAGIVVMNTPFGNSITTA 45 (82) Q Consensus 22 D~~~~~~~gI~v~n~~~~~~~sVA 45 (82) =+.+|.++||.|...||.++.-.| T Consensus 104 LV~~a~~~~i~V~~iPGpSA~i~A 127 (242) T 1wyz_A 104 VVAIAQRQKLKVIPLVGPSSIILS 127 (242) T ss_dssp HHHHHHHTTCCEEECCCCCHHHHH T ss_pred HHHHHHHCCCEEEEECCCCHHHHH T ss_conf 999999589679985475058789 Done!