RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780152|ref|YP_003064565.1| D-3-phosphoglycerate
dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
(82 letters)
>gnl|CDD|144107 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid
dehydrogenase, catalytic domain. This family represents
the largest portion of the catalytic domain of
2-hydroxyacid dehydrogenases as the NAD binding domain
is inserted within the structural domain.
Length = 313
Score = 99.7 bits (249), Expect = 2e-22
Identities = 33/82 (40%), Positives = 51/82 (62%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60
+L A +KV+ R G+G DN+DL A+ GI+V N P ++ + AE + L+LA+AR+IP
Sbjct: 55 VLEAAPGLKVIARRGVGVDNIDLDAATERGILVTNVPGYSTESVAELTVGLILALARRIP 114
Query: 61 VANESTHKGKWEKFNFMGVEAG 82
A+ S G W+K +G+E
Sbjct: 115 EADASVRAGDWKKGGPIGLELR 136
>gnl|CDD|35291 KOG0068, KOG0068, KOG0068, D-3-phosphoglycerate dehydrogenase,
D-isomer-specific 2-hydroxy acid dehydrogenase
superfamily [Amino acid transport and metabolism].
Length = 406
Score = 93.4 bits (232), Expect = 1e-20
Identities = 40/78 (51%), Positives = 54/78 (69%)
Query: 3 SHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVA 62
+ A +KVVGRAGIG DNVDL A+ GI+V+NTP NS + AE I L+L++ARQI A
Sbjct: 66 AAAGGLKVVGRAGIGVDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQA 125
Query: 63 NESTHKGKWEKFNFMGVE 80
+ S +GKW + ++G E
Sbjct: 126 SASMKEGKWNRVKYLGWE 143
>gnl|CDD|30460 COG0111, SerA, Phosphoglycerate dehydrogenase and related
dehydrogenases [Amino acid transport and metabolism].
Length = 324
Score = 91.2 bits (226), Expect = 6e-20
Identities = 37/80 (46%), Positives = 58/80 (72%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60
+L+ A +K +GRAG G DN+DL A++ GI+V+N P GN+I+ AE ++L+LA+AR+IP
Sbjct: 60 VLAAAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIP 119
Query: 61 VANESTHKGKWEKFNFMGVE 80
A+ S +G+W++ F G E
Sbjct: 120 DADASQRRGEWDRKAFRGTE 139
>gnl|CDD|31252 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases
[Energy production and conversion / Coenzyme metabolism
/ General function prediction only].
Length = 324
Score = 72.6 bits (178), Expect = 2e-14
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60
+L +K++ G DNVDL A GI V N P ++ AEHA++L+LA+AR+I
Sbjct: 60 VLEKLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIH 119
Query: 61 VANESTHKGKWEK 73
+ +G W
Sbjct: 120 EGDRRVREGNWSL 132
>gnl|CDD|35292 KOG0069, KOG0069, KOG0069, Glyoxylate/hydroxypyruvate reductase
(D-isomer-specific 2-hydroxy acid dehydrogenase
superfamily) [Energy production and conversion].
Length = 336
Score = 53.1 bits (127), Expect = 2e-08
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 1 MLSH-AKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQI 59
++S + +K++ +G D+VDL A + GI V N P + A+ A+SL+LA+ R+
Sbjct: 77 LISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRF 136
Query: 60 PVANESTHKGKWEKF 74
NE G W
Sbjct: 137 SEGNEMVRNGGWGWA 151
>gnl|CDD|35290 KOG0067, KOG0067, KOG0067, Transcription factor CtBP
[Transcription].
Length = 435
Score = 33.6 bits (76), Expect = 0.013
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 6 KKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANES 65
K ++V+ R G G DN+D+ AS GI V N P TA+ + +L + R+ ++
Sbjct: 94 KALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWLCQA 153
Query: 66 THKGKW 71
+G
Sbjct: 154 LREGTC 159
>gnl|CDD|145796 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid
dehydrogenase, NAD binding domain. This domain is
inserted into the catalytic domain, the large
dehydrogenase and D-lactate dehydrogenase families in
SCOP. N-terminal portion of which is represented by
family pfam00389.
Length = 176
Score = 31.7 bits (73), Expect = 0.046
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 49 ISLMLAIARQIPVANESTHKGKWE-KFNFMGVE 80
++L+LA+AR+IP A+ G+W +G E
Sbjct: 1 LALLLALARRIPEADRQVRAGRWARPDALLGRE 33
>gnl|CDD|32379 COG2197, CitB, Response regulator containing a CheY-like receiver
domain and an HTH DNA-binding domain [Signal
transduction mechanisms / Transcription].
Length = 211
Score = 26.8 bits (59), Expect = 1.1
Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 6/69 (8%)
Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVM--NTPFGNSITTAEHAISLMLAIARQ 58
+L ++VVG A G + +DL + +V++ + P + + A+ + A
Sbjct: 19 LLELEPDLEVVGEASNGEEALDLARELKPDVVLLDLSMPGMDGLE----ALKQLRARGPD 74
Query: 59 IPVANESTH 67
I V + H
Sbjct: 75 IKVVVLTAH 83
>gnl|CDD|38296 KOG3086, KOG3086, KOG3086, Predicted dioxygenase [General function
prediction only].
Length = 296
Score = 26.5 bits (58), Expect = 1.8
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 38 FGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKF 74
N+I H IS++L+ + A S K K+ +
Sbjct: 237 TQNTIC-GRHPISVILSALSHMRKAGPSKIKFKFLNY 272
>gnl|CDD|32444 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 198
Score = 26.4 bits (58), Expect = 2.1
Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 14 AGIGTDNVDLVVA------SRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTH 67
A +V+ VVA + V+MN PFG + HA L A +I S H
Sbjct: 88 AEELLGDVEFVVADVSDFRGKFDTVIMNPPFG---SQRRHADRPFLLKALEISDVVYSIH 144
Query: 68 KGKWEKF 74
K F
Sbjct: 145 KAGSRDF 151
>gnl|CDD|37002 KOG1791, KOG1791, KOG1791, Uncharacterized conserved protein
[Function unknown].
Length = 1758
Score = 25.3 bits (55), Expect = 3.3
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 42 ITTAEHAISLMLAIARQIPVANESTH 67
+ +ISL + ++ ES H
Sbjct: 1285 SSMLSGSISLDKELDEKVRSVLESPH 1310
>gnl|CDD|33767 COG4007, COG4007, Predicted dehydrogenase related to H2-forming
N5,N10-methylenetetrahydromethanopterin dehydrogenase
[General function prediction only].
Length = 340
Score = 24.9 bits (54), Expect = 4.5
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 8 MKVVGRAGIGTDNVDLVVASRAGIVVMNTPFG 39
K V AG+ + D A I V+ TPFG
Sbjct: 62 WKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFG 93
>gnl|CDD|34025 COG4303, EutB, Ethanolamine ammonia-lyase, large subunit [Amino
acid transport and metabolism].
Length = 453
Score = 23.8 bits (51), Expect = 9.7
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 21 VDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIAR 57
DL+ S AG N FG S+ + A +L L R
Sbjct: 241 GDLIFQSIAGSEKGNKEFGVSLAMLDEARALGLEFNR 277
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.318 0.131 0.371
Gapped
Lambda K H
0.267 0.0849 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 901,100
Number of extensions: 37087
Number of successful extensions: 103
Number of sequences better than 10.0: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 18
Length of query: 82
Length of database: 6,263,737
Length adjustment: 52
Effective length of query: 30
Effective length of database: 5,140,069
Effective search space: 154202070
Effective search space used: 154202070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.2 bits)