RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780152|ref|YP_003064565.1| D-3-phosphoglycerate
dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
         (82 letters)



>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric
           regulation phosphoglycerate dehydrogenase PGDH,
           oxidoreductase; HET: NAD; 2.09A {Escherichia coli}
           (A:1-100,A:289-321)
          Length = 133

 Score = 54.0 bits (130), Expect = 7e-09
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQI 59
           +++ A+K+  +G   IGT+ VDL  A++ GI V N PFG S   A+  I L   +A ++
Sbjct: 63  VINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFG-STQEAQENIGLE--VAGKL 118


>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
           structural genomics center for infectious disease,
           brucellosis; 2.15A {Brucella melitensis biovar abortus}
           (A:1-111,A:300-332)
          Length = 144

 Score = 52.2 bits (125), Expect = 3e-08
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQI 59
           + + A ++  VG   +GT+ V+L  A + GI V N PFG S   A+  I     + R++
Sbjct: 74  IFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFG-STEEAQERIGTE--VTRKL 129


>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy
           acid dehydrogenase, cofactor regenerator, yeast, CBFDH;
           HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A
           (A:1-117,A:314-364)
          Length = 168

 Score = 51.0 bits (122), Expect = 5e-08
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSIT 43
            +  AKK+K+V  AG+G+D++DL   ++ G  +         T
Sbjct: 78  RIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGGTT 120


>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase,
           structural genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
           horikoshii} PDB: 2dbr_A* 2dbz_A* (A:1-98,A:291-334)
          Length = 142

 Score = 50.9 bits (122), Expect = 6e-08
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITT 44
           +  +A K+++V    +G DN+D+  A++ GI V NTP   S   
Sbjct: 61  VFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDSASFGA 104


>2nac_A NAD-dependent formate dehydrogenase;
           oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
           SP} (A:1-144,A:335-393)
          Length = 203

 Score = 50.7 bits (121), Expect = 6e-08
 Identities = 14/42 (33%), Positives = 24/42 (57%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSI 42
            ++ AK +K+   AGIG+D+VDL  A    + V    +G ++
Sbjct: 107 RIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYGTTL 148


>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
           phosphoglycerate dehydrogenase deficiency, serine
           metabolism; HET: NAD; 1.70A {Homo sapiens}
           (A:1-120,A:306-335)
          Length = 150

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 3/59 (5%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQI 59
           +++ A+K++VVGRAG G DNVDL  A+R GI+VMNTP  +   T E        IA Q 
Sbjct: 83  VINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNAS---TKEAQSRCGEEIAVQF 138


>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
           serine biosynthesis, structural genomics, PSI, protein
           structure initiative; HET: TAR; 2.30A {Mycobacterium
           tuberculosis} (A:1-97,A:283-322)
          Length = 137

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQI 59
           +L+ A K+K+V RAG+G DNVD+  A+  G++V+N P  +   TAE        +A  +
Sbjct: 60  VLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTAS---TAEAQDRAGTDVAESV 115


>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A
          {Pyrobaculum aerophilum} (A:1-80,A:264-303)
          Length = 120

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 6/37 (16%), Positives = 12/37 (32%)

Query: 1  MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTP 37
           L+   ++K +     G D++          V  N  
Sbjct: 44 ELAKXPRLKFIQVVTAGLDHLPWESIPPHVTVAGNAG 80


>3evt_A Phosphoglycerate dehydrogenase; structural genomics,
          PSI-2, protein structure initiative; 2.20A
          {Lactobacillus plantarum} (A:1-91,A:282-324)
          Length = 134

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 11/37 (29%), Positives = 16/37 (43%)

Query: 1  MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTP 37
          +     ++K V     G D + L     AG+VV NT 
Sbjct: 55 LARPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTS 91


>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+
           (A)); 2.40A {Hyphomicrobium methylovorum}
           (A:1-98,A:289-320)
          Length = 130

 Score = 48.8 bits (116), Expect = 3e-07
 Identities = 12/46 (26%), Positives = 19/46 (41%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAE 46
           +    + +K +    IG D++DL      GI V N P   +    E
Sbjct: 61  IDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHSAATQARE 106


>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
           oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
           2w2l_A* 2w2l_D* 2w2k_B (A:1-111,A:307-348)
          Length = 153

 Score = 48.5 bits (115), Expect = 3e-07
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 5   AKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITT 44
              +KV   AG G D +DL   +  G+   N+  G +I T
Sbjct: 78  PSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGGVAIET 117


>1wwk_A Phosphoglycerate dehydrogenase; riken structural
           genomics/proteomics initiative, RSGI, structural
           genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
           horikoshii OT3} (A:1-97,A:284-307)
          Length = 121

 Score = 48.4 bits (115), Expect = 4e-07
 Identities = 19/48 (39%), Positives = 30/48 (62%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHA 48
           ++  A K+KV+ RAG+G DN+D+  A   GI V+N P  +++   E A
Sbjct: 60  VIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASTVEAQERA 107


>2o4c_A Erythronate-4-phosphate dehydrogenase;
          erythronate-4-phsphate, NAD, tartrate, phosphate ION,
          oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas
          aeruginosa} (A:1-90,A:258-287)
          Length = 120

 Score = 47.9 bits (114), Expect = 5e-07
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 1  MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTP 37
                 ++ VG   IGTD++DL   + AGI   + P
Sbjct: 52 AALAGSPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAP 88


>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural
           genomics, riken structural genomics/proteomics
           initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus
           thermophilus HB8} (A:1-96,A:280-311)
          Length = 128

 Score = 47.5 bits (113), Expect = 6e-07
 Identities = 17/44 (38%), Positives = 24/44 (54%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITT 44
           ++  AK +KV+    +G D+VDL  A   GI V +TP     TT
Sbjct: 59  VMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGSAGRTT 102


>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent
          dehydrogenase, reversible interconversion of pyruvate
          INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp}
          (A:103-299)
          Length = 197

 Score = 47.6 bits (112), Expect = 6e-07
 Identities = 9/39 (23%), Positives = 13/39 (33%)

Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMG 78
          +    AEHA      I RQ    +E   +        +G
Sbjct: 1  SPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIG 39


>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+
          (A)); 2.40A {Hyphomicrobium methylovorum} (A:99-288)
          Length = 190

 Score = 47.5 bits (112), Expect = 6e-07
 Identities = 10/40 (25%), Positives = 18/40 (45%)

Query: 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMG 78
          G ++ TAE A+ L+L  AR+     +      W  +  + 
Sbjct: 1  GVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLE 40


>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P)
           rossmann fold, formate/glycerate dehydrogenase
           substrate-binding domain, oxidoreductase; HET: NDP;
           2.20A {Homo sapiens} PDB: 2h1s_A 2q50_A
           (A:1-107,A:298-330)
          Length = 140

 Score = 47.5 bits (113), Expect = 6e-07
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 4   HAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITT 44
               +KV+    +G D++ L    + GI V  TP   +  T
Sbjct: 73  AGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDSATHRT 113


>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase family
           protein; structural genomics, protein structure
           initiative; 1.80A {Aeromonas salmonicida subsp}
           (A:1-97,A:282-324)
          Length = 140

 Score = 47.5 bits (113), Expect = 6e-07
 Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 3/53 (5%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLML 53
           +L+ A K+        G D +      R    + N     + +  +    + +
Sbjct: 61  LLAKANKLSWFQSTYAGVDVLL-DARCRRDYQLTNVR--GAYSFPDDVAQIFV 110


>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD,
           3D-structure, structural genomics, NPPSFA; HET: MSE NAD;
           2.12A {Aquifex aeolicus VF5} (A:)
          Length = 334

 Score = 47.4 bits (111), Expect = 7e-07
 Identities = 16/77 (20%), Positives = 40/77 (51%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60
           +LS   ++K++    +G D++DL    + GI+V + P  +  + AEH  + +L + +++ 
Sbjct: 58  LLSKXPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLK 117

Query: 61  VANESTHKGKWEKFNFM 77
              +   K  + + + +
Sbjct: 118 RIEDRVKKLNFSQDSEI 134


>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
           phosphorylation, transcriptional corepressor,
           transcription repressor; HET: NAD; 1.95A {Homo sapiens}
           (A:1-116,A:312-347)
          Length = 152

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTP 37
            L   K ++++ R G G DN+D+  A   GI V N P
Sbjct: 79  DLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVP 115


>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
          structural genomics center for infectious disease,
          brucellosis; 2.15A {Brucella melitensis biovar abortus}
          (A:112-299)
          Length = 188

 Score = 46.8 bits (110), Expect = 1e-06
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80
          N+ + AE  I  ++ + R+I   + S H G WEK      E
Sbjct: 2  NTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSRE 42


>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
           dehydrogenase, D-lactate dehydrogenase, oxidoreductase;
           HET: NAD; 1.86A {Lactobacillus casei}
           (A:1-100,A:298-333)
          Length = 136

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 7   KMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEH 47
            +K +    +GTDN+D+    + GI + N P      TA H
Sbjct: 68  GIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYYYTETAVH 108


>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics,
          NPPSFA, national project on protein structural and
          functional analyses; HET: NAD; 1.77A {Sulfolobus
          tokodaii} (A:100-285)
          Length = 186

 Score = 46.3 bits (109), Expect = 2e-06
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKF 74
           ++ +  E  I LM+A AR++  +      G ++K 
Sbjct: 1  ASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKKI 36


>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national
          project on protein structural and functional analyses;
          1.95A {Pyrococcus horikoshii OT3} (A:1-94,A:287-333)
          Length = 141

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 1  MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTP 37
          +L +A+++KV+     G DN+DL  A++ GI V    
Sbjct: 58 VLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVS 94


>3evt_A Phosphoglycerate dehydrogenase; structural genomics,
          PSI-2, protein structure initiative; 2.20A
          {Lactobacillus plantarum} (A:92-281)
          Length = 190

 Score = 46.0 bits (108), Expect = 2e-06
 Identities = 5/41 (12%), Positives = 14/41 (34%)

Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80
          ++   +E  ++ ML++ R    A  +    +          
Sbjct: 3  HADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPMTTST 43


>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics,
           NPPSFA, national project on protein structural and
           functional analyses; HET: NAD; 1.77A {Sulfolobus
           tokodaii} (A:1-99,A:286-313)
          Length = 127

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 15/41 (36%), Positives = 24/41 (58%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNS 41
           ++   KK+K++ RAGIG DN+D   A +  I V+  P   +
Sbjct: 62  VIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGAQT 102


>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase;
          oxidoreductase, phosphoglycerate dehydrogenase
          deficiency, serine metabolism; HET: NAD; 1.70A {Homo
          sapiens} (A:121-305)
          Length = 185

 Score = 46.1 bits (108), Expect = 2e-06
 Identities = 20/42 (47%), Positives = 27/42 (64%)

Query: 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80
          GNS++ AE    +++ +ARQIP A  S   GKWE+  FMG E
Sbjct: 1  GNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTE 42


>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
           substrate binding domain, cofactor binding domain,
           oxidoreductase; 1.47A {Solenostemon scutellarioides}
           PDB: 3baz_A* (A:1-118,A:302-333)
          Length = 150

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITT 44
           ++    K+++V    +G D VDL+     G+ V NTP   ++ T
Sbjct: 81  LIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDSGTVET 124


>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2-
          hydroxy acid dehydrogenase, cofactor regenerator,
          yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB:
          2fss_A (A:118-313)
          Length = 196

 Score = 45.3 bits (106), Expect = 3e-06
 Identities = 11/38 (28%), Positives = 16/38 (42%)

Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFM 77
          N ++ AEH +  ML + R    A+E      WE     
Sbjct: 2  NVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIA 39


>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric
          regulation phosphoglycerate dehydrogenase PGDH,
          oxidoreductase; HET: NAD; 2.09A {Escherichia coli}
          (A:101-288)
          Length = 188

 Score = 45.4 bits (106), Expect = 3e-06
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80
          N+ + AE  I  +L + R +P AN   H+G   K      E
Sbjct: 2  NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFE 42


>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase family
          protein; structural genomics, protein structure
          initiative; 1.80A {Aeromonas salmonicida subsp}
          (A:98-281)
          Length = 184

 Score = 44.9 bits (105), Expect = 4e-06
 Identities = 7/35 (20%), Positives = 16/35 (45%)

Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKF 74
               +E+    +L++ RQ+P+  E   +  W+  
Sbjct: 2  FGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSH 36


>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase;
          structural variant of the BAB rossmann fold,
          oxidoreductase; 1.98A {Acidaminococcus fermentans}
          (A:1-101,A:300-331)
          Length = 133

 Score = 44.9 bits (106), Expect = 4e-06
 Identities = 8/31 (25%), Positives = 13/31 (41%)

Query: 7  KMKVVGRAGIGTDNVDLVVASRAGIVVMNTP 37
           +K +     GTD++D   A   G  +   P
Sbjct: 69 GVKYILTRTAGTDHIDKEYAKELGFPMAFVP 99


>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase;
          structural variant of the BAB rossmann fold,
          oxidoreductase; 1.98A {Acidaminococcus fermentans}
          (A:102-299)
          Length = 198

 Score = 44.6 bits (104), Expect = 5e-06
 Identities = 8/38 (21%), Positives = 15/38 (39%)

Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFM 77
          +    AE A++  + + R        T K  ++   FM
Sbjct: 1  SPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFM 38


>3kbo_A Glyoxylate/hydroxypyruvate reductase A; NADP, cytoplasm,
          NAD, structural genomics; HET: NDP NDB EPE; 2.14A
          {Salmonella enterica subsp} (A:96-280)
          Length = 185

 Score = 44.5 bits (104), Expect = 5e-06
 Identities = 7/36 (19%), Positives = 15/36 (41%)

Query: 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKF 74
          G  +   E+A+S +L   R+        ++  W+  
Sbjct: 2  GXGLQXQEYAVSQVLHWFRRFDDYQALKNQALWKPL 37


>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
          serine biosynthesis, structural genomics, PSI, protein
          structure initiative; HET: TAR; 2.30A {Mycobacterium
          tuberculosis} (A:98-282)
          Length = 185

 Score = 44.5 bits (104), Expect = 5e-06
 Identities = 18/41 (43%), Positives = 28/41 (68%)

Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80
          N  + AEHA++L+LA +RQIP A+ S  +  W++ +F G E
Sbjct: 2  NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTE 42


>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural
          genomics, riken structural genomics/proteomics
          initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus
          thermophilus HB8} (A:97-279)
          Length = 183

 Score = 44.5 bits (104), Expect = 5e-06
 Identities = 9/39 (23%), Positives = 20/39 (51%)

Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMG 78
           +  TA+  ++L+LA+AR++         G W+ ++   
Sbjct: 2  LTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPEL 40


>2nac_A NAD-dependent formate dehydrogenase;
          oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
          SP} (A:145-334)
          Length = 190

 Score = 44.5 bits (104), Expect = 5e-06
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEK 73
          NSI+ AEH + ++L++ R    ++E   KG W  
Sbjct: 2  NSISVAEHVVMMILSLVRNYLPSHEWARKGGWNI 35


>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P)
          rossmann fold, formate/glycerate dehydrogenase
          substrate-binding domain, oxidoreductase; HET: NDP;
          2.20A {Homo sapiens} PDB: 2h1s_A 2q50_A (A:108-297)
          Length = 190

 Score = 44.5 bits (104), Expect = 5e-06
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEK---FNFMGVE 80
           + TTAE A+SL+L   R++P A E    G W         G  
Sbjct: 2  LTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYG 45


>1wwk_A Phosphoglycerate dehydrogenase; riken structural
          genomics/proteomics initiative, RSGI, structural
          genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
          horikoshii OT3} (A:98-283)
          Length = 186

 Score = 44.2 bits (103), Expect = 6e-06
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80
          +S + AE A+ LM ++AR+I  A+    +G W K   MG+E
Sbjct: 2  SSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIE 42


>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
          oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
          2w2l_A* 2w2l_D* 2w2k_B (A:112-306)
          Length = 195

 Score = 43.8 bits (102), Expect = 7e-06
 Identities = 9/38 (23%), Positives = 18/38 (47%)

Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFM 77
              T++ A+ L+L++ R    +  +   G  E FN +
Sbjct: 2  GDTATSDLALYLILSVFRLASYSERAARTGDPETFNRV 39


>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
          substrate binding domain, cofactor binding domain,
          oxidoreductase; 1.47A {Solenostemon scutellarioides}
          PDB: 3baz_A* (A:119-301)
          Length = 183

 Score = 43.7 bits (102), Expect = 8e-06
 Identities = 11/38 (28%), Positives = 21/38 (55%)

Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFM 77
           +   A+ AI L+LA+ R+I   ++   +G W+  +F 
Sbjct: 2  LTDDVADLAIGLILAVLRRICECDKYVRRGAWKFGDFK 39


>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase,
          structural genomics, NPPSFA; HET: NAP; 1.70A
          {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* (A:99-290)
          Length = 192

 Score = 43.6 bits (102), Expect = 8e-06
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEK 73
           +  TA+ A +L+LA AR +   +     G+W+K
Sbjct: 2  LTDATADLAFALLLATARHVVKGDRFVRSGEWKK 35


>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
           reversible interconversion of pyruvate INTO D-lactate;
           1.90A {Lactobacillus delbrueckii subsp}
           (A:1-102,A:300-333)
          Length = 136

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 3/53 (5%)

Query: 4   HAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIA 56
               +  +    +G DN+D+  A   G  + N P     TT  HA+  M+  A
Sbjct: 67  ADNGITKMSLRNVGVDNIDMAKAKELGFQITNVP-VYFYTT--HAVRNMVVKA 116


>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A
          {Pyrobaculum aerophilum} (A:81-263)
          Length = 183

 Score = 42.9 bits (100), Expect = 1e-05
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKW 71
          N+   AE A++L+LA  ++I    E   +G +
Sbjct: 2  NADAVAEFALALLLAPYKRIIQYGEKXKRGDY 33


>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II,
          11143J, structural genomics, protein structure
          initiative; 2.20A {Thermoplasma acidophilum} (A:79-259)
          Length = 181

 Score = 42.9 bits (100), Expect = 2e-05
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKF 74
           SI+ AEHA +L+LA A+ I   NE    G + + 
Sbjct: 3  YSISVAEHAFALLLAHAKNILENNELXKAGIFRQS 37


>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
          phosphorylation, transcriptional corepressor,
          transcription repressor; HET: NAD; 1.95A {Homo sapiens}
          (A:117-311)
          Length = 195

 Score = 42.7 bits (99), Expect = 2e-05
 Identities = 5/33 (15%), Positives = 15/33 (45%)

Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWE 72
          +   TA+  +  +L + R+    +++  +G   
Sbjct: 2  SVEETADSTLCHILNLYRRATWLHQALREGTRV 34


>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national
          project on protein structural and functional analyses;
          1.95A {Pyrococcus horikoshii OT3} (A:95-286)
          Length = 192

 Score = 42.2 bits (98), Expect = 3e-05
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEK 73
           S   AE  + L++ + R+I  A++   +G+WE 
Sbjct: 3  LSEAVAEFTVGLIINLMRKIHYADKFIRRGEWES 36


>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase protein;
          structural genomics, PSI-2, protein structure
          initiative; 1.90A {Ralstonia solanacearum} (A:108-302)
          Length = 195

 Score = 41.8 bits (97), Expect = 3e-05
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 42 ITTAEHAISLMLAIARQIPVANESTHKGKWEK 73
          +  AE   +L++A  R+IP    S   G W++
Sbjct: 2  VAPAELTWALVMAAQRRIPQYVASLKHGAWQQ 33


>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase protein;
           structural genomics, PSI-2, protein structure
           initiative; 1.90A {Ralstonia solanacearum}
           (A:1-107,A:303-352)
          Length = 157

 Score = 41.0 bits (96), Expect = 5e-05
 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 1   MLSHAKKMKVVGRAG----IGTDNVDLVVASRAGIVVMNTPF 38
           +L    K+K++ + G        ++DL   +  G+VV+    
Sbjct: 65  LLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKG 106


>1dxy_A D-2-hydroxyisocaproate dehydrogenase;
          D-2-hydroxycarboxylate dehydrogenase, D-lactate
          dehydrogenase, oxidoreductase; HET: NAD; 1.86A
          {Lactobacillus casei} (A:101-297)
          Length = 197

 Score = 40.7 bits (94), Expect = 8e-05
 Identities = 8/37 (21%), Positives = 13/37 (35%)

Query: 41 SITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFM 77
              AE A++  L + R +         G +EK    
Sbjct: 2  PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTF 38


>2o4c_A Erythronate-4-phosphate dehydrogenase;
          erythronate-4-phsphate, NAD, tartrate, phosphate ION,
          oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas
          aeruginosa} (A:91-257)
          Length = 167

 Score = 36.3 bits (83), Expect = 0.001
 Identities = 5/32 (15%), Positives = 11/32 (34%)

Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKW 71
          N+    ++ +  +LA+A            G  
Sbjct: 1  NARGVVDYVLGCLLAMAEVRGADLAERTYGVV 32


>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET:
          NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A*
          2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* (A:125-318)
          Length = 194

 Score = 31.7 bits (71), Expect = 0.033
 Identities = 7/50 (14%), Positives = 11/50 (22%), Gaps = 11/50 (22%)

Query: 30 GIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGV 79
          G + +  P       +E A  L   +                      GV
Sbjct: 1  GALPLLAP------MSEVAGRLAAQVGAYH-----LMRTQGGRGVLMGGV 39


>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET:
          NA7; 2.5A {Homo sapiens} (A:1-193)
          Length = 193

 Score = 29.2 bits (64), Expect = 0.21
 Identities = 2/26 (7%), Positives = 6/26 (23%)

Query: 52 MLAIARQIPVANESTHKGKWEKFNFM 77
          M          +  T    ++    +
Sbjct: 1  MHHHHHHSSGVDLGTENLYFQSMGSI 26


>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
          oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
          PDB: 3ggg_D* 3ggp_A* (A:1-204)
          Length = 204

 Score = 28.7 bits (63), Expect = 0.28
 Identities = 3/22 (13%), Positives = 7/22 (31%)

Query: 52 MLAIARQIPVANESTHKGKWEK 73
          M +       ++    +G   K
Sbjct: 1  MGSSHHHHHHSSGLVPRGSHMK 22


>2eez_A Alanine dehydrogenase; TTHA0216, structural genomics,
          NPPSFA, national project on protein structural and
          functional analyses; 2.71A {Thermus thermophilus HB8}
          (A:123-315)
          Length = 193

 Score = 28.3 bits (62), Expect = 0.33
 Identities = 7/50 (14%), Positives = 12/50 (24%), Gaps = 11/50 (22%)

Query: 30 GIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGV 79
          G + +  P       +E A  +   +  Q                   GV
Sbjct: 1  GTLPLLVP------MSEVAGRMAPQVGAQFLEKP-----KGGRGVLLGGV 39


>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural
          genomics, joint center for structural genomics, JCSG,
          protein structure initiative; HET: MSE TAR; 2.10A
          {Bacillus halodurans} (A:126-269)
          Length = 144

 Score = 26.9 bits (59), Expect = 0.87
 Identities = 7/24 (29%), Positives = 9/24 (37%)

Query: 35 NTPFGNSITTAEHAISLMLAIARQ 58
          +    NSI TAE  I   +     
Sbjct: 3  DIAIYNSIPTAEGTIXXAIQHTDF 26


>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB:
          2p2d_A 2p2n_A 2ocd_A (A:229-358)
          Length = 130

 Score = 26.3 bits (58), Expect = 1.4
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 14 AGIGTDNVDLVVASRA-GIVVMNTPFGNSITTAEHAISLMLAIARQIPVANES 65
           GI  D V   +      +++ +   GN+         L  A  R I V N +
Sbjct: 11 PGISADVVRNFLRQPVKALILRSYGVGNAPQNKAFLQELQEASDRGIVVVNLT 63


>2rir_A Dipicolinate synthase, A chain; structural genomics,
          APC1343, PSI-2, protein structure initiative, midwest
          center for structural genomics; HET: MSE NAP; 2.79A
          {Bacillus subtilis} (A:128-271)
          Length = 144

 Score = 26.1 bits (57), Expect = 1.5
 Identities = 7/24 (29%), Positives = 9/24 (37%)

Query: 35 NTPFGNSITTAEHAISLMLAIARQ 58
          +    NSI T E  I L +     
Sbjct: 3  DIAIYNSIPTVEGTIXLAIQHTDY 26


>1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A
          {Pyrococcus horikoshii} PDB: 1wnf_A (A:199-328)
          Length = 130

 Score = 25.5 bits (56), Expect = 2.3
 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 14 AGIGTDNVDLVVASRA-GIVVMNTPFGNSITTAEHAISLMLAIARQIPVANES 65
           G+  D V   +     GI++     G           ++ +I+++IPV   +
Sbjct: 11 PGLSGDIVREALRLGYKGIILEGYGVGGIPYRGTDLFEVVSSISKRIPVVLTT 63


>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD;
          HET: NAD; 2.00A {Phormidium lapideum} (A:124-315)
          Length = 192

 Score = 24.8 bits (53), Expect = 4.0
 Identities = 1/32 (3%), Positives = 8/32 (25%)

Query: 43 TTAEHAISLMLAIARQIPVANESTHKGKWEKF 74
          +        ++A    +        + +  + 
Sbjct: 2  SLPLLTPMSIIAGRLSVQFGARFLERQQGGRG 33



 Score = 23.6 bits (50), Expect = 8.6
 Identities = 3/37 (8%), Positives = 7/37 (18%), Gaps = 4/37 (10%)

Query: 44 TAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80
           +  A  L +    +         +G           
Sbjct: 9  MSIIAGRLSVQFGARFLER----QQGGRGVLLGGVPG 41


>1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel,
           beta-structure for C-terminal domain, internal/external
           aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A
           {Pseudomonas aeruginosa} (A:1-10,A:222-357)
          Length = 146

 Score = 24.7 bits (54), Expect = 4.5
 Identities = 11/48 (22%), Positives = 20/48 (41%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHA 48
           +    K  ++VGR  +    VDL    +AG+      +G ++     A
Sbjct: 75  VFIDGKPGRLVGRVSMDMLTVDLTDHPQAGLGSRVELWGPNVPVGALA 122


>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase,
           oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo
           sapiens} PDB: 2jg7_A* (A:273-462)
          Length = 190

 Score = 24.7 bits (52), Expect = 4.8
 Identities = 5/12 (41%), Positives = 6/12 (50%)

Query: 28  RAGIVVMNTPFG 39
             GIV +N P  
Sbjct: 178 DCGIVNVNIPTS 189


>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A
          {Plasmodium falciparum 3D7} (A:227-394)
          Length = 168

 Score = 24.5 bits (52), Expect = 5.2
 Identities = 2/28 (7%), Positives = 5/28 (17%), Gaps = 1/28 (3%)

Query: 54 AIARQIPVANESTHKGKWEKFN-FMGVE 80
          A+ +Q             +         
Sbjct: 1  AVTKQKYDNVYGCRHSLPDGLMRATDFL 28


>1pii_A N-(5'phosphoribosyl)anthranilate isomerase;
           bifunctional(isomerase and synthase); 2.00A {Escherichia
           coli} (A:241-452)
          Length = 212

 Score = 24.4 bits (52), Expect = 5.2
 Identities = 7/36 (19%), Positives = 14/36 (38%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNT 36
           +L+      V+   G+G DN      +    +  N+
Sbjct: 153 LLNGQSLGNVLLAGGLGADNCVEAAQTGCAGLDFNS 188


>2qez_A Ethanolamine ammonia-lyase heavy chain; YP_013784.1,
           ethanolamine ammonia lyase large subunit (EUTB),
           structural genomics; HET: MSE; 2.15A {Listeria
           monocytogenes str} (A:)
          Length = 455

 Score = 24.2 bits (53), Expect = 5.6
 Identities = 14/37 (37%), Positives = 14/37 (37%)

Query: 21  VDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIAR 57
             LV  S AG    NT FG    T E A  L L    
Sbjct: 242 TGLVFQSIAGSEKGNTAFGFDGATIEEARQLALQSGA 278


>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid,
          S-adenosyl-L-homocysteine hydrolase, cytoplasm, NAD,
          one-carbon metabolism; HET: NAD; 2.30A {Burkholderia
          pseudomallei 1710B} PDB: 3glq_A* (A:247-409)
          Length = 163

 Score = 24.0 bits (51), Expect = 6.9
 Identities = 1/28 (3%), Positives = 6/28 (21%), Gaps = 1/28 (3%)

Query: 54 AIARQIPVANESTHKGKWEK-FNFMGVE 80
          ++ +          +   +       V 
Sbjct: 1  SVTKSKFDNLYGCRESLVDGIKRATDVM 28


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.318    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0464    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 566,677
Number of extensions: 19213
Number of successful extensions: 126
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 75
Length of query: 82
Length of database: 4,956,049
Length adjustment: 46
Effective length of query: 36
Effective length of database: 3,401,019
Effective search space: 122436684
Effective search space used: 122436684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.7 bits)