RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780152|ref|YP_003064565.1| D-3-phosphoglycerate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (82 letters) >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} (A:1-100,A:289-321) Length = 133 Score = 54.0 bits (130), Expect = 7e-09 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%) Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQI 59 +++ A+K+ +G IGT+ VDL A++ GI V N PFG S A+ I L +A ++ Sbjct: 63 VINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFG-STQEAQENIGLE--VAGKL 118 >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infectious disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} (A:1-111,A:300-332) Length = 144 Score = 52.2 bits (125), Expect = 3e-08 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%) Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQI 59 + + A ++ VG +GT+ V+L A + GI V N PFG S A+ I + R++ Sbjct: 74 IFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFG-STEEAQERIGTE--VTRKL 129 >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A (A:1-117,A:314-364) Length = 168 Score = 51.0 bits (122), Expect = 5e-08 Identities = 13/43 (30%), Positives = 23/43 (53%) Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSIT 43 + AKK+K+V AG+G+D++DL ++ G + T Sbjct: 78 RIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGGTT 120 >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, structural genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* (A:1-98,A:291-334) Length = 142 Score = 50.9 bits (122), Expect = 6e-08 Identities = 15/44 (34%), Positives = 25/44 (56%) Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITT 44 + +A K+++V +G DN+D+ A++ GI V NTP S Sbjct: 61 VFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDSASFGA 104 >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} (A:1-144,A:335-393) Length = 203 Score = 50.7 bits (121), Expect = 6e-08 Identities = 14/42 (33%), Positives = 24/42 (57%) Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSI 42 ++ AK +K+ AGIG+D+VDL A + V +G ++ Sbjct: 107 RIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYGTTL 148 >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, serine metabolism; HET: NAD; 1.70A {Homo sapiens} (A:1-120,A:306-335) Length = 150 Score = 49.2 bits (117), Expect = 2e-07 Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 3/59 (5%) Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQI 59 +++ A+K++VVGRAG G DNVDL A+R GI+VMNTP + T E IA Q Sbjct: 83 VINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNAS---TKEAQSRCGEEIAVQF 138 >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosynthesis, structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} (A:1-97,A:283-322) Length = 137 Score = 49.1 bits (117), Expect = 2e-07 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%) Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQI 59 +L+ A K+K+V RAG+G DNVD+ A+ G++V+N P + TAE +A + Sbjct: 60 VLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTAS---TAEAQDRAGTDVAESV 115 >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} (A:1-80,A:264-303) Length = 120 Score = 49.0 bits (117), Expect = 2e-07 Identities = 6/37 (16%), Positives = 12/37 (32%) Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTP 37 L+ ++K + G D++ V N Sbjct: 44 ELAKXPRLKFIQVVTAGLDHLPWESIPPHVTVAGNAG 80 >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} (A:1-91,A:282-324) Length = 134 Score = 48.7 bits (116), Expect = 3e-07 Identities = 11/37 (29%), Positives = 16/37 (43%) Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTP 37 + ++K V G D + L AG+VV NT Sbjct: 55 LARPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTS 91 >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} (A:1-98,A:289-320) Length = 130 Score = 48.8 bits (116), Expect = 3e-07 Identities = 12/46 (26%), Positives = 19/46 (41%) Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAE 46 + + +K + IG D++DL GI V N P + E Sbjct: 61 IDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHSAATQARE 106 >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B (A:1-111,A:307-348) Length = 153 Score = 48.5 bits (115), Expect = 3e-07 Identities = 13/40 (32%), Positives = 19/40 (47%) Query: 5 AKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITT 44 +KV AG G D +DL + G+ N+ G +I T Sbjct: 78 PSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGGVAIET 117 >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii OT3} (A:1-97,A:284-307) Length = 121 Score = 48.4 bits (115), Expect = 4e-07 Identities = 19/48 (39%), Positives = 30/48 (62%) Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHA 48 ++ A K+KV+ RAG+G DN+D+ A GI V+N P +++ E A Sbjct: 60 VIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASTVEAQERA 107 >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosphate ION, oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} (A:1-90,A:258-287) Length = 120 Score = 47.9 bits (114), Expect = 5e-07 Identities = 12/37 (32%), Positives = 18/37 (48%) Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTP 37 ++ VG IGTD++DL + AGI + P Sbjct: 52 AALAGSPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAP 88 >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus HB8} (A:1-96,A:280-311) Length = 128 Score = 47.5 bits (113), Expect = 6e-07 Identities = 17/44 (38%), Positives = 24/44 (54%) Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITT 44 ++ AK +KV+ +G D+VDL A GI V +TP TT Sbjct: 59 VMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGSAGRTT 102 >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} (A:103-299) Length = 197 Score = 47.6 bits (112), Expect = 6e-07 Identities = 9/39 (23%), Positives = 13/39 (33%) Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMG 78 + AEHA I RQ +E + +G Sbjct: 1 SPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIG 39 >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} (A:99-288) Length = 190 Score = 47.5 bits (112), Expect = 6e-07 Identities = 10/40 (25%), Positives = 18/40 (45%) Query: 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMG 78 G ++ TAE A+ L+L AR+ + W + + Sbjct: 1 GVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLE 40 >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substrate-binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2h1s_A 2q50_A (A:1-107,A:298-330) Length = 140 Score = 47.5 bits (113), Expect = 6e-07 Identities = 11/41 (26%), Positives = 18/41 (43%) Query: 4 HAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITT 44 +KV+ +G D++ L + GI V TP + T Sbjct: 73 AGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDSATHRT 113 >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase family protein; structural genomics, protein structure initiative; 1.80A {Aeromonas salmonicida subsp} (A:1-97,A:282-324) Length = 140 Score = 47.5 bits (113), Expect = 6e-07 Identities = 7/53 (13%), Positives = 17/53 (32%), Gaps = 3/53 (5%) Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLML 53 +L+ A K+ G D + R + N + + + + + Sbjct: 61 LLAKANKLSWFQSTYAGVDVLL-DARCRRDYQLTNVR--GAYSFPDDVAQIFV 110 >2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure, structural genomics, NPPSFA; HET: MSE NAD; 2.12A {Aquifex aeolicus VF5} (A:) Length = 334 Score = 47.4 bits (111), Expect = 7e-07 Identities = 16/77 (20%), Positives = 40/77 (51%) Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60 +LS ++K++ +G D++DL + GI+V + P + + AEH + +L + +++ Sbjct: 58 LLSKXPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLK 117 Query: 61 VANESTHKGKWEKFNFM 77 + K + + + + Sbjct: 118 RIEDRVKKLNFSQDSEI 134 >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepressor, transcription repressor; HET: NAD; 1.95A {Homo sapiens} (A:1-116,A:312-347) Length = 152 Score = 46.9 bits (111), Expect = 1e-06 Identities = 14/37 (37%), Positives = 20/37 (54%) Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTP 37 L K ++++ R G G DN+D+ A GI V N P Sbjct: 79 DLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVP 115 >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infectious disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} (A:112-299) Length = 188 Score = 46.8 bits (110), Expect = 1e-06 Identities = 13/41 (31%), Positives = 20/41 (48%) Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80 N+ + AE I ++ + R+I + S H G WEK E Sbjct: 2 NTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSRE 42 >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenase, oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} (A:1-100,A:298-333) Length = 136 Score = 46.1 bits (109), Expect = 1e-06 Identities = 13/41 (31%), Positives = 20/41 (48%) Query: 7 KMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEH 47 +K + +GTDN+D+ + GI + N P TA H Sbjct: 68 GIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYYYTETAVH 108 >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} (A:100-285) Length = 186 Score = 46.3 bits (109), Expect = 2e-06 Identities = 9/36 (25%), Positives = 18/36 (50%) Query: 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKF 74 ++ + E I LM+A AR++ + G ++K Sbjct: 1 ASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKKI 36 >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.95A {Pyrococcus horikoshii OT3} (A:1-94,A:287-333) Length = 141 Score = 46.0 bits (109), Expect = 2e-06 Identities = 13/37 (35%), Positives = 22/37 (59%) Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTP 37 +L +A+++KV+ G DN+DL A++ GI V Sbjct: 58 VLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVS 94 >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} (A:92-281) Length = 190 Score = 46.0 bits (108), Expect = 2e-06 Identities = 5/41 (12%), Positives = 14/41 (34%) Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80 ++ +E ++ ML++ R A + + Sbjct: 3 HADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPMTTST 43 >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} (A:1-99,A:286-313) Length = 127 Score = 46.1 bits (109), Expect = 2e-06 Identities = 15/41 (36%), Positives = 24/41 (58%) Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNS 41 ++ KK+K++ RAGIG DN+D A + I V+ P + Sbjct: 62 VIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGAQT 102 >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, serine metabolism; HET: NAD; 1.70A {Homo sapiens} (A:121-305) Length = 185 Score = 46.1 bits (108), Expect = 2e-06 Identities = 20/42 (47%), Positives = 27/42 (64%) Query: 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80 GNS++ AE +++ +ARQIP A S GKWE+ FMG E Sbjct: 1 GNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTE 42 >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor binding domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* (A:1-118,A:302-333) Length = 150 Score = 45.7 bits (108), Expect = 2e-06 Identities = 13/44 (29%), Positives = 23/44 (52%) Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITT 44 ++ K+++V +G D VDL+ G+ V NTP ++ T Sbjct: 81 LIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDSGTVET 124 >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A (A:118-313) Length = 196 Score = 45.3 bits (106), Expect = 3e-06 Identities = 11/38 (28%), Positives = 16/38 (42%) Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFM 77 N ++ AEH + ML + R A+E WE Sbjct: 2 NVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIA 39 >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} (A:101-288) Length = 188 Score = 45.4 bits (106), Expect = 3e-06 Identities = 13/41 (31%), Positives = 19/41 (46%) Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80 N+ + AE I +L + R +P AN H+G K E Sbjct: 2 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFE 42 >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase family protein; structural genomics, protein structure initiative; 1.80A {Aeromonas salmonicida subsp} (A:98-281) Length = 184 Score = 44.9 bits (105), Expect = 4e-06 Identities = 7/35 (20%), Positives = 16/35 (45%) Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKF 74 +E+ +L++ RQ+P+ E + W+ Sbjct: 2 FGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSH 36 >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} (A:1-101,A:300-331) Length = 133 Score = 44.9 bits (106), Expect = 4e-06 Identities = 8/31 (25%), Positives = 13/31 (41%) Query: 7 KMKVVGRAGIGTDNVDLVVASRAGIVVMNTP 37 +K + GTD++D A G + P Sbjct: 69 GVKYILTRTAGTDHIDKEYAKELGFPMAFVP 99 >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} (A:102-299) Length = 198 Score = 44.6 bits (104), Expect = 5e-06 Identities = 8/38 (21%), Positives = 15/38 (39%) Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFM 77 + AE A++ + + R T K ++ FM Sbjct: 1 SPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFM 38 >3kbo_A Glyoxylate/hydroxypyruvate reductase A; NADP, cytoplasm, NAD, structural genomics; HET: NDP NDB EPE; 2.14A {Salmonella enterica subsp} (A:96-280) Length = 185 Score = 44.5 bits (104), Expect = 5e-06 Identities = 7/36 (19%), Positives = 15/36 (41%) Query: 39 GNSITTAEHAISLMLAIARQIPVANESTHKGKWEKF 74 G + E+A+S +L R+ ++ W+ Sbjct: 2 GXGLQXQEYAVSQVLHWFRRFDDYQALKNQALWKPL 37 >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosynthesis, structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} (A:98-282) Length = 185 Score = 44.5 bits (104), Expect = 5e-06 Identities = 18/41 (43%), Positives = 28/41 (68%) Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80 N + AEHA++L+LA +RQIP A+ S + W++ +F G E Sbjct: 2 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTE 42 >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus HB8} (A:97-279) Length = 183 Score = 44.5 bits (104), Expect = 5e-06 Identities = 9/39 (23%), Positives = 20/39 (51%) Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMG 78 + TA+ ++L+LA+AR++ G W+ ++ Sbjct: 2 LTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPEL 40 >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} (A:145-334) Length = 190 Score = 44.5 bits (104), Expect = 5e-06 Identities = 12/34 (35%), Positives = 20/34 (58%) Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEK 73 NSI+ AEH + ++L++ R ++E KG W Sbjct: 2 NSISVAEHVVMMILSLVRNYLPSHEWARKGGWNI 35 >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substrate-binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2h1s_A 2q50_A (A:108-297) Length = 190 Score = 44.5 bits (104), Expect = 5e-06 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 3/44 (6%) Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEK---FNFMGVE 80 + TTAE A+SL+L R++P A E G W G Sbjct: 2 LTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYG 45 >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii OT3} (A:98-283) Length = 186 Score = 44.2 bits (103), Expect = 6e-06 Identities = 16/41 (39%), Positives = 25/41 (60%) Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80 +S + AE A+ LM ++AR+I A+ +G W K MG+E Sbjct: 2 SSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIE 42 >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B (A:112-306) Length = 195 Score = 43.8 bits (102), Expect = 7e-06 Identities = 9/38 (23%), Positives = 18/38 (47%) Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFM 77 T++ A+ L+L++ R + + G E FN + Sbjct: 2 GDTATSDLALYLILSVFRLASYSERAARTGDPETFNRV 39 >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor binding domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* (A:119-301) Length = 183 Score = 43.7 bits (102), Expect = 8e-06 Identities = 11/38 (28%), Positives = 21/38 (55%) Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFM 77 + A+ AI L+LA+ R+I ++ +G W+ +F Sbjct: 2 LTDDVADLAIGLILAVLRRICECDKYVRRGAWKFGDFK 39 >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, structural genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* (A:99-290) Length = 192 Score = 43.6 bits (102), Expect = 8e-06 Identities = 11/34 (32%), Positives = 19/34 (55%) Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEK 73 + TA+ A +L+LA AR + + G+W+K Sbjct: 2 LTDATADLAFALLLATARHVVKGDRFVRSGEWKK 35 >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} (A:1-102,A:300-333) Length = 136 Score = 43.4 bits (102), Expect = 1e-05 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 3/53 (5%) Query: 4 HAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIA 56 + + +G DN+D+ A G + N P TT HA+ M+ A Sbjct: 67 ADNGITKMSLRNVGVDNIDMAKAKELGFQITNVP-VYFYTT--HAVRNMVVKA 116 >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} (A:81-263) Length = 183 Score = 42.9 bits (100), Expect = 1e-05 Identities = 10/32 (31%), Positives = 18/32 (56%) Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKW 71 N+ AE A++L+LA ++I E +G + Sbjct: 2 NADAVAEFALALLLAPYKRIIQYGEKXKRGDY 33 >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} (A:79-259) Length = 181 Score = 42.9 bits (100), Expect = 2e-05 Identities = 14/35 (40%), Positives = 20/35 (57%) Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKF 74 SI+ AEHA +L+LA A+ I NE G + + Sbjct: 3 YSISVAEHAFALLLAHAKNILENNELXKAGIFRQS 37 >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepressor, transcription repressor; HET: NAD; 1.95A {Homo sapiens} (A:117-311) Length = 195 Score = 42.7 bits (99), Expect = 2e-05 Identities = 5/33 (15%), Positives = 15/33 (45%) Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWE 72 + TA+ + +L + R+ +++ +G Sbjct: 2 SVEETADSTLCHILNLYRRATWLHQALREGTRV 34 >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.95A {Pyrococcus horikoshii OT3} (A:95-286) Length = 192 Score = 42.2 bits (98), Expect = 3e-05 Identities = 10/34 (29%), Positives = 19/34 (55%) Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEK 73 S AE + L++ + R+I A++ +G+WE Sbjct: 3 LSEAVAEFTVGLIINLMRKIHYADKFIRRGEWES 36 >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Ralstonia solanacearum} (A:108-302) Length = 195 Score = 41.8 bits (97), Expect = 3e-05 Identities = 10/32 (31%), Positives = 17/32 (53%) Query: 42 ITTAEHAISLMLAIARQIPVANESTHKGKWEK 73 + AE +L++A R+IP S G W++ Sbjct: 2 VAPAELTWALVMAAQRRIPQYVASLKHGAWQQ 33 >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Ralstonia solanacearum} (A:1-107,A:303-352) Length = 157 Score = 41.0 bits (96), Expect = 5e-05 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 4/42 (9%) Query: 1 MLSHAKKMKVVGRAG----IGTDNVDLVVASRAGIVVMNTPF 38 +L K+K++ + G ++DL + G+VV+ Sbjct: 65 LLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKG 106 >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenase, oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} (A:101-297) Length = 197 Score = 40.7 bits (94), Expect = 8e-05 Identities = 8/37 (21%), Positives = 13/37 (35%) Query: 41 SITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFM 77 AE A++ L + R + G +EK Sbjct: 2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTF 38 >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosphate ION, oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} (A:91-257) Length = 167 Score = 36.3 bits (83), Expect = 0.001 Identities = 5/32 (15%), Positives = 11/32 (34%) Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKW 71 N+ ++ + +LA+A G Sbjct: 1 NARGVVDYVLGCLLAMAEVRGADLAERTYGVV 32 >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* (A:125-318) Length = 194 Score = 31.7 bits (71), Expect = 0.033 Identities = 7/50 (14%), Positives = 11/50 (22%), Gaps = 11/50 (22%) Query: 30 GIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGV 79 G + + P +E A L + GV Sbjct: 1 GALPLLAP------MSEVAGRLAAQVGAYH-----LMRTQGGRGVLMGGV 39 >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} (A:1-193) Length = 193 Score = 29.2 bits (64), Expect = 0.21 Identities = 2/26 (7%), Positives = 6/26 (23%) Query: 52 MLAIARQIPVANESTHKGKWEKFNFM 77 M + T ++ + Sbjct: 1 MHHHHHHSSGVDLGTENLYFQSMGSI 26 >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* (A:1-204) Length = 204 Score = 28.7 bits (63), Expect = 0.28 Identities = 3/22 (13%), Positives = 7/22 (31%) Query: 52 MLAIARQIPVANESTHKGKWEK 73 M + ++ +G K Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMK 22 >2eez_A Alanine dehydrogenase; TTHA0216, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.71A {Thermus thermophilus HB8} (A:123-315) Length = 193 Score = 28.3 bits (62), Expect = 0.33 Identities = 7/50 (14%), Positives = 12/50 (24%), Gaps = 11/50 (22%) Query: 30 GIVVMNTPFGNSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGV 79 G + + P +E A + + Q GV Sbjct: 1 GTLPLLVP------MSEVAGRMAPQVGAQFLEKP-----KGGRGVLLGGV 39 >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE TAR; 2.10A {Bacillus halodurans} (A:126-269) Length = 144 Score = 26.9 bits (59), Expect = 0.87 Identities = 7/24 (29%), Positives = 9/24 (37%) Query: 35 NTPFGNSITTAEHAISLMLAIARQ 58 + NSI TAE I + Sbjct: 3 DIAIYNSIPTAEGTIXXAIQHTDF 26 >2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 2ocd_A (A:229-358) Length = 130 Score = 26.3 bits (58), Expect = 1.4 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%) Query: 14 AGIGTDNVDLVVASRA-GIVVMNTPFGNSITTAEHAISLMLAIARQIPVANES 65 GI D V + +++ + GN+ L A R I V N + Sbjct: 11 PGISADVVRNFLRQPVKALILRSYGVGNAPQNKAFLQELQEASDRGIVVVNLT 63 >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, protein structure initiative, midwest center for structural genomics; HET: MSE NAP; 2.79A {Bacillus subtilis} (A:128-271) Length = 144 Score = 26.1 bits (57), Expect = 1.5 Identities = 7/24 (29%), Positives = 9/24 (37%) Query: 35 NTPFGNSITTAEHAISLMLAIARQ 58 + NSI T E I L + Sbjct: 3 DIAIYNSIPTVEGTIXLAIQHTDY 26 >1wls_A L-asparaginase; structural genomics, hydrolase; 2.16A {Pyrococcus horikoshii} PDB: 1wnf_A (A:199-328) Length = 130 Score = 25.5 bits (56), Expect = 2.3 Identities = 10/53 (18%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 14 AGIGTDNVDLVVASRA-GIVVMNTPFGNSITTAEHAISLMLAIARQIPVANES 65 G+ D V + GI++ G ++ +I+++IPV + Sbjct: 11 PGLSGDIVREALRLGYKGIILEGYGVGGIPYRGTDLFEVVSSISKRIPVVLTT 63 >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} (A:124-315) Length = 192 Score = 24.8 bits (53), Expect = 4.0 Identities = 1/32 (3%), Positives = 8/32 (25%) Query: 43 TTAEHAISLMLAIARQIPVANESTHKGKWEKF 74 + ++A + + + + Sbjct: 2 SLPLLTPMSIIAGRLSVQFGARFLERQQGGRG 33 Score = 23.6 bits (50), Expect = 8.6 Identities = 3/37 (8%), Positives = 7/37 (18%), Gaps = 4/37 (10%) Query: 44 TAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80 + A L + + +G Sbjct: 9 MSIIAGRLSVQFGARFLER----QQGGRGVLLGGVPG 41 >1rcq_A Catabolic alanine racemase DADX; alpha-beta barrel, beta-structure for C-terminal domain, internal/external aldimine forms, isomerase; HET: KCX PLP DLY; 1.45A {Pseudomonas aeruginosa} (A:1-10,A:222-357) Length = 146 Score = 24.7 bits (54), Expect = 4.5 Identities = 11/48 (22%), Positives = 20/48 (41%) Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHA 48 + K ++VGR + VDL +AG+ +G ++ A Sbjct: 75 VFIDGKPGRLVGRVSMDMLTVDLTDHPQAGLGSRVELWGPNVPVGALA 122 >2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase, oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo sapiens} PDB: 2jg7_A* (A:273-462) Length = 190 Score = 24.7 bits (52), Expect = 4.8 Identities = 5/12 (41%), Positives = 6/12 (50%) Query: 28 RAGIVVMNTPFG 39 GIV +N P Sbjct: 178 DCGIVNVNIPTS 189 >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum 3D7} (A:227-394) Length = 168 Score = 24.5 bits (52), Expect = 5.2 Identities = 2/28 (7%), Positives = 5/28 (17%), Gaps = 1/28 (3%) Query: 54 AIARQIPVANESTHKGKWEKFN-FMGVE 80 A+ +Q + Sbjct: 1 AVTKQKYDNVYGCRHSLPDGLMRATDFL 28 >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} (A:241-452) Length = 212 Score = 24.4 bits (52), Expect = 5.2 Identities = 7/36 (19%), Positives = 14/36 (38%) Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNT 36 +L+ V+ G+G DN + + N+ Sbjct: 153 LLNGQSLGNVLLAGGLGADNCVEAAQTGCAGLDFNS 188 >2qez_A Ethanolamine ammonia-lyase heavy chain; YP_013784.1, ethanolamine ammonia lyase large subunit (EUTB), structural genomics; HET: MSE; 2.15A {Listeria monocytogenes str} (A:) Length = 455 Score = 24.2 bits (53), Expect = 5.6 Identities = 14/37 (37%), Positives = 14/37 (37%) Query: 21 VDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIAR 57 LV S AG NT FG T E A L L Sbjct: 242 TGLVFQSIAGSEKGNTAFGFDGATIEEARQLALQSGA 278 >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydrolase, cytoplasm, NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei 1710B} PDB: 3glq_A* (A:247-409) Length = 163 Score = 24.0 bits (51), Expect = 6.9 Identities = 1/28 (3%), Positives = 6/28 (21%), Gaps = 1/28 (3%) Query: 54 AIARQIPVANESTHKGKWEK-FNFMGVE 80 ++ + + + V Sbjct: 1 SVTKSKFDNLYGCRESLVDGIKRATDVM 28 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.318 0.131 0.371 Gapped Lambda K H 0.267 0.0464 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 566,677 Number of extensions: 19213 Number of successful extensions: 126 Number of sequences better than 10.0: 1 Number of HSP's gapped: 125 Number of HSP's successfully gapped: 75 Length of query: 82 Length of database: 4,956,049 Length adjustment: 46 Effective length of query: 36 Effective length of database: 3,401,019 Effective search space: 122436684 Effective search space used: 122436684 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 50 (23.7 bits)