RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780152|ref|YP_003064565.1| D-3-phosphoglycerate
dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
         (82 letters)



>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
           dehydrogenase, D-lactate dehydrogenase, oxidoreductase;
           HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
           c.23.12.1
          Length = 333

 Score = 83.2 bits (205), Expect = 1e-17
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 4   HAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVAN 63
           HA  +K +    +GTDN+D+    + GI + N P  +    AE A++  L + R +    
Sbjct: 65  HAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQ 124

Query: 64  ESTHKGKWEKFN-FMGVEAG 82
                G +EK   F+G E G
Sbjct: 125 AQLQAGDYEKAGTFIGKELG 144


>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
           phosphorylation, transcriptional corepressor,
           transcription repressor; HET: NAD; 1.95A {Homo sapiens}
           SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
           3ga0_A 2ome_A*
          Length = 347

 Score = 79.0 bits (194), Expect = 2e-16
 Identities = 19/77 (24%), Positives = 36/77 (46%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60
            L   K ++++ R G G DN+D+  A   GI V N P  +   TA+  +  +L + R+  
Sbjct: 79  DLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRAT 138

Query: 61  VANESTHKGKWEKFNFM 77
             +++  +G   +    
Sbjct: 139 WLHQALREGTRVQSVEQ 155


>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
           oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
           PDB: 3n7u_A* 3naq_A
          Length = 351

 Score = 73.1 bits (179), Expect = 1e-14
 Identities = 20/77 (25%), Positives = 34/77 (44%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60
            +  AK +K++  AGIG+D++DL      G+ V      N ++ AE  +  +L + R   
Sbjct: 80  RIKKAKNLKLLLTAGIGSDHIDLQXXXXXGLTVAEVTGSNVVSVAEDELMRILILMRNFV 139

Query: 61  VANESTHKGKWEKFNFM 77
                  KG+W      
Sbjct: 140 PGYNQVVKGEWNVAGIA 156


>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
           reversible interconversion of pyruvate INTO D-lactate;
           1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
           c.23.12.1 PDB: 1j49_A* 2dld_A*
          Length = 333

 Score = 71.4 bits (174), Expect = 5e-14
 Identities = 18/77 (23%), Positives = 28/77 (36%)

Query: 4   HAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVAN 63
               +  +    +G DN+D+  A   G  + N P  +    AEHA      I RQ    +
Sbjct: 67  ADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMD 126

Query: 64  ESTHKGKWEKFNFMGVE 80
           E   +        +G E
Sbjct: 127 EKVARHDLRWAPTIGRE 143


>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
           aerophilum} SCOP: c.2.1.4 c.23.12.1
          Length = 303

 Score = 69.8 bits (170), Expect = 2e-13
 Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 1/82 (1%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60
            L+   ++K +     G D++    +    + V      N+   AE A++L+LA  ++I 
Sbjct: 44  ELAKMPRLKFIQVVTAGLDHLPWE-SIPPHVTVAGNAGSNADAVAEFALALLLAPYKRII 102

Query: 61  VANESTHKGKWEKFNFMGVEAG 82
              E   +G + +   + +  G
Sbjct: 103 QYGEKMKRGDYGRDVEIPLIQG 124


>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
           2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
           c.23.12.1
          Length = 320

 Score = 65.2 bits (158), Expect = 3e-12
 Identities = 21/73 (28%), Positives = 34/73 (46%)

Query: 5   AKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANE 64
            + +K +    IG D++DL      GI V N P G ++ TAE A+ L+L  AR+     +
Sbjct: 65  PENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEK 124

Query: 65  STHKGKWEKFNFM 77
                 W  +  +
Sbjct: 125 MIRTRSWPGWEPL 137


>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
           biosynthesis, structural genomics, PSI, protein
           structure initiative; HET: TAR; 2.30A {Mycobacterium
           tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2
           PDB: 3dc2_A* 3ddn_A*
          Length = 529

 Score = 63.3 bits (153), Expect = 1e-11
 Identities = 34/77 (44%), Positives = 54/77 (70%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60
           +L+ A K+K+V RAG+G DNVD+  A+  G++V+N P  N  + AEHA++L+LA +RQIP
Sbjct: 60  VLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIP 119

Query: 61  VANESTHKGKWEKFNFM 77
            A+ S  +  W++ +F 
Sbjct: 120 AADASLREHTWKRSSFS 136


>2nac_A NAD-dependent formate dehydrogenase;
           oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
           SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
           2gsd_A*
          Length = 393

 Score = 62.9 bits (152), Expect = 2e-11
 Identities = 25/77 (32%), Positives = 43/77 (55%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60
            ++ AK +K+   AGIG+D+VDL  A    + V    + NSI+ AEH + ++L++ R   
Sbjct: 107 RIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYL 166

Query: 61  VANESTHKGKWEKFNFM 77
            ++E   KG W   + +
Sbjct: 167 PSHEWARKGGWNIADCV 183


>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
           for structural genomics of infec diseases, csgid; HET:
           NAD; 2.36A {Salmonella enterica subsp}
          Length = 381

 Score = 56.5 bits (136), Expect = 1e-09
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 4/77 (5%)

Query: 2   LSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPV 61
           L     +  VG A  GTD+VD     +AGI     P  N+I   E+  S +L +A +   
Sbjct: 56  LLSGTPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERDGF 115

Query: 62  ANESTHKGKWEKFNFMG 78
               + + +      +G
Sbjct: 116 ----SLRDRTIGIVGVG 128


>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
           structural genomics, protein structure initiative; 2.20A
           {Thermoplasma acidophilum}
          Length = 290

 Score = 56.3 bits (134), Expect = 1e-09
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 2   LSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPV 61
               K+ K++     G D++D+       +V+ +     SI+ AEHA +L+LA A+ I  
Sbjct: 44  YVLGKRTKMIQAISAGVDHIDVNGIPE-NVVLCSNAGAYSISVAEHAFALLLAHAKNILE 102

Query: 62  ANESTHKGKWEKFNFM 77
            NE    G + +    
Sbjct: 103 NNELMKAGIFRQSPTT 118


>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
           dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
           PG4; 1.55A {Candida boidinii} PDB: 2fss_A
          Length = 364

 Score = 52.2 bits (124), Expect = 3e-08
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGI--VVMNTPFGNSITTAEHAISLMLAIARQ 58
            +  AKK+K+V  AG+G+D++DL   ++ G    V+     N ++ AEH +  ML + R 
Sbjct: 78  RIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRN 137

Query: 59  IPVANESTHKGKWEKFNFM 77
              A+E      WE     
Sbjct: 138 FVPAHEQIINHDWEVAAIA 156


>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
           oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
           2w2l_A* 2w2l_D* 2w2k_B
          Length = 348

 Score = 49.3 bits (116), Expect = 2e-07
 Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 1/78 (1%)

Query: 1   MLSHA-KKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQI 59
           ++SH    +KV   AG G D +DL   +  G+   N+       T++ A+ L+L++ R  
Sbjct: 73  LISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLA 132

Query: 60  PVANESTHKGKWEKFNFM 77
             +  +   G  E FN +
Sbjct: 133 SYSERAARTGDPETFNRV 150


>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase family protein;
           structural genomics, protein structure initiative; 1.80A
           {Aeromonas salmonicida subsp}
          Length = 324

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 1/80 (1%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60
           +L+ A K+        G D   L    R    + N         +E+    +L++ RQ+P
Sbjct: 61  LLAKANKLSWFQSTYAGVDV-LLDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLP 119

Query: 61  VANESTHKGKWEKFNFMGVE 80
           +  E   +  W+   + G++
Sbjct: 120 LYREQQKQRLWQSHPYQGLK 139


>3kbo_A Glyoxylate/hydroxypyruvate reductase A; NADP, cytoplasm, NAD,
           structural genomics; HET: NDP NDB EPE; 2.14A {Salmonella
           enterica subsp}
          Length = 315

 Score = 45.9 bits (107), Expect = 2e-06
 Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 2   LSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPF------GNSITTAEHAISLMLAI 55
           +   +++K V   G G D +   + +   ++  + P       G  +   E+A+S +L  
Sbjct: 54  MLAGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHW 113

Query: 56  ARQIPVANESTHKGKWEKFNFMGVE 80
            R+        ++  W+       E
Sbjct: 114 FRRFDDYQALKNQALWKPLPEYTRE 138


>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
           structural genomics, NPPSFA; HET: MSE NAD; 2.12A
           {Aquifex aeolicus VF5}
          Length = 334

 Score = 44.2 bits (103), Expect = 6e-06
 Identities = 16/77 (20%), Positives = 41/77 (53%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60
           +LS   ++K++    +G D++DL    + GI+V + P  +  + AEH  +++L + +++ 
Sbjct: 58  LLSKMPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLK 117

Query: 61  VANESTHKGKWEKFNFM 77
              +   K  + + + +
Sbjct: 118 RIEDRVKKLNFSQDSEI 134


>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
           phosphoglycerate dehydrogenase deficiency, serine
           metabolism; HET: NAD; 1.70A {Homo sapiens}
          Length = 335

 Score = 43.7 bits (102), Expect = 9e-06
 Identities = 43/80 (53%), Positives = 58/80 (72%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60
           +++ A+K++VVGRAG G DNVDL  A+R GI+VMNTP GNS++ AE    +++ +ARQIP
Sbjct: 83  VINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIP 142

Query: 61  VANESTHKGKWEKFNFMGVE 80
            A  S   GKWE+  FMG E
Sbjct: 143 QATASMKDGKWERKKFMGTE 162


>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
           structure initiative; 2.20A {Lactobacillus plantarum}
          Length = 324

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 16/73 (21%), Positives = 29/73 (39%)

Query: 5   AKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANE 64
             ++K V     G D + L     AG+VV NT   ++   +E  ++ ML++ R    A  
Sbjct: 59  TNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWL 118

Query: 65  STHKGKWEKFNFM 77
           +    +       
Sbjct: 119 NQRGARQWALPMT 131


>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
           tartrate, phosphate ION, oxidoreductase; HET: NAD TLA;
           2.30A {Pseudomonas aeruginosa}
          Length = 380

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 17/67 (25%), Positives = 29/67 (43%)

Query: 5   AKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANE 64
              ++ VG   IGTD++DL   + AGI   + P  N+    ++ +  +LA+A        
Sbjct: 56  GSPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVRGADLA 115

Query: 65  STHKGKW 71
               G  
Sbjct: 116 ERTYGVV 122


>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
           substrate binding domain, cofactor binding domain,
           oxidoreductase; 1.47A {Solenostemon scutellarioides}
           PDB: 3baz_A*
          Length = 333

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 23/77 (29%), Positives = 41/77 (53%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60
           ++    K+++V    +G D VDL+     G+ V NTP   +   A+ AI L+LA+ R+I 
Sbjct: 81  LIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRIC 140

Query: 61  VANESTHKGKWEKFNFM 77
             ++   +G W+  +F 
Sbjct: 141 ECDKYVRRGAWKFGDFK 157


>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
           structural genomics center for infectious disease,
           brucellosis; 2.15A {Brucella melitensis biovar abortus}
          Length = 416

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 26/77 (33%), Positives = 41/77 (53%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60
           + + A ++  VG   +GT+ V+L  A + GI V N PF N+ + AE  I  ++ + R+I 
Sbjct: 74  IFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIF 133

Query: 61  VANESTHKGKWEKFNFM 77
             + S H G WEK    
Sbjct: 134 PRSVSAHAGGWEKTAIG 150


>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
           phosphoglycerate dehydrogenase PGDH, oxidoreductase;
           HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
           c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
           2pa3_A* 2p9g_A*
          Length = 404

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 28/80 (35%), Positives = 41/80 (51%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60
           +++ A+K+  +G   IGT+ VDL  A++ GI V N PF N+ + AE  I       R +P
Sbjct: 63  VINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEXXXXXRGVP 122

Query: 61  VANESTHKGKWEKFNFMGVE 80
            AN   H+G   K      E
Sbjct: 123 EANAKAHRGVGNKLAAGSFE 142


>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase,
           structural genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
           horikoshii} PDB: 2dbr_A* 2dbz_A*
          Length = 334

 Score = 31.8 bits (71), Expect = 0.037
 Identities = 25/77 (32%), Positives = 43/77 (55%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60
           +  +A K+++V    +G DN+D+  A++ GI V NTP   +  TA+ A +L+LA AR + 
Sbjct: 61  VFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVV 120

Query: 61  VANESTHKGKWEKFNFM 77
             +     G+W+K    
Sbjct: 121 KGDRFVRSGEWKKRGVA 137


>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme,
           oxidoreductase; HET: NAG FAD; 1.55A {Acremonium
           strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A*
          Length = 503

 Score = 25.3 bits (54), Expect = 3.2
 Identities = 8/70 (11%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 2   LSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPV 61
                 +++  + G G            G +++       ++  ++ ++ +   AR    
Sbjct: 61  CGLDAGVQISAKGG-GHSYGSYGFGGEDGHLMLELDRMYRVSVDDNNVATIQGGARLGYT 119

Query: 62  ANESTHKGKW 71
           A E   +G  
Sbjct: 120 ALELLDQGNR 129


>2wlt_A L-asparaginase; hydrolase; 1.40A {Helicobacter pylori} PDB: 2wt4_A
          Length = 332

 Score = 24.7 bits (53), Expect = 4.8
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 10  VVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANES 65
           +   AG+  D     + S A  VV+    GN   +A    ++  A    + +   S
Sbjct: 224 IYTHAGMTPDLFQASLNSHAKGVVIAG-VGNGNVSAGFLKAMQEASQMGVVIVRSS 278


>3abq_A Ethanolamine ammonia-lyase heavy chain; (beta/alpha)8 fold, cobalt,
           cobalamin; HET: B12; 2.05A {Escherichia coli} PDB:
           3abo_A* 3abr_A* 3abs_A*
          Length = 453

 Score = 24.8 bits (54), Expect = 5.1
 Identities = 7/39 (17%), Positives = 12/39 (30%)

Query: 21  VDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQI 59
             L+  S  G       FG  +   + A ++     R  
Sbjct: 241 GGLIFQSICGSEKGLKEFGVELAMLDEARAVGAEFNRIA 279


>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A
           2p2n_A 2ocd_A
          Length = 358

 Score = 24.0 bits (51), Expect = 8.0
 Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 14  AGIGTDNVDLVVASRA-GIVVMNTPFGNSITTAEHAISLMLAIARQIPVANES 65
            GI  D V   +      +++ +   GN+         L  A  R I V N +
Sbjct: 239 PGISADVVRNFLRQPVKALILRSYGVGNAPQNKAFLQELQEASDRGIVVVNLT 291


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.318    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 649,832
Number of extensions: 23107
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 35
Length of query: 82
Length of database: 5,693,230
Length adjustment: 50
Effective length of query: 32
Effective length of database: 4,481,030
Effective search space: 143392960
Effective search space used: 143392960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.4 bits)