RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780152|ref|YP_003064565.1| D-3-phosphoglycerate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] (82 letters) >d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186 Score = 63.4 bits (154), Expect = 5e-12 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 8/79 (10%) Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHA--------ISLM 52 ++ AK +K+ AGIG+D+VDL A + V + NS T A I Sbjct: 107 RIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILEC 166 Query: 53 LAIARQIPVANESTHKGKW 71 R I G Sbjct: 167 FFEGRPIRDEYLIVQGGAL 185 >d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134 Score = 59.2 bits (143), Expect = 9e-11 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 6/71 (8%) Query: 4 HAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVAN 63 + + +G DN+D+ A G + N P + HA+ M+ A N Sbjct: 66 ADNGITKMSLRNVGVDNIDMAKAKELGFQITNVP---VYSYTTHAVRNMVVKAFDN---N 119 Query: 64 ESTHKGKWEKF 74 +GK + Sbjct: 120 LELVEGKEAET 130 >d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133 Score = 56.9 bits (137), Expect = 4e-10 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60 L K ++++ R G G DN+D+ A GI V N P S+ + + +I + AR+I Sbjct: 59 DLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVP-AASVYSEQASIEMREEAAREIR 117 Query: 61 VANESTHKGKW 71 A Sbjct: 118 RAITGRIPDSL 128 >d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131 Score = 55.8 bits (134), Expect = 1e-09 Identities = 14/66 (21%), Positives = 24/66 (36%) Query: 4 HAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVAN 63 HA +K + +GTDN+D+ + GI + N P + + + Sbjct: 65 HAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGE 124 Query: 64 ESTHKG 69 ST Sbjct: 125 TSTEVT 130 >d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129 Score = 54.2 bits (130), Expect = 3e-09 Identities = 16/59 (27%), Positives = 23/59 (38%) Query: 7 KMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANES 65 +K + IG D++DL GI V N P G + + A I A+ S Sbjct: 67 NIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDALFGGADMS 125 >d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130 Score = 53.6 bits (128), Expect = 4e-09 Identities = 22/68 (32%), Positives = 36/68 (52%) Query: 4 HAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVAN 63 A K+K+V RAG+G DNVD+ A+ G++V+N P S A+ +A + ++ +A Sbjct: 61 AAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAG 120 Query: 64 ESTHKGKW 71 E Sbjct: 121 EFVPDAVN 128 >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184 Score = 48.4 bits (114), Expect = 1e-07 Identities = 16/38 (42%), Positives = 26/38 (68%) Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFM 77 N + AEHA++L+LA +RQIP A+ S + W++ +F Sbjct: 1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFS 38 >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197 Score = 48.3 bits (113), Expect = 2e-07 Identities = 10/38 (26%), Positives = 13/38 (34%) Query: 43 TTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80 AEHA I RQ +E + +G E Sbjct: 3 AIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGRE 40 >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188 Score = 48.1 bits (113), Expect = 2e-07 Identities = 13/41 (31%), Positives = 19/41 (46%) Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80 N+ + AE I +L + R +P AN H+G K E Sbjct: 1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFE 41 >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188 Score = 47.3 bits (111), Expect = 3e-07 Identities = 10/37 (27%), Positives = 20/37 (54%) Query: 42 ITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMG 78 I+ AEH + ++L++ R ++E KG W + + Sbjct: 1 ISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVS 37 >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191 Score = 46.4 bits (109), Expect = 6e-07 Identities = 9/37 (24%), Positives = 17/37 (45%) Query: 41 SITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFM 77 ++ TAE A+ L+L AR+ + W + + Sbjct: 2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPL 38 >d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121 Score = 46.1 bits (109), Expect = 8e-07 Identities = 7/59 (11%), Positives = 18/59 (30%), Gaps = 1/59 (1%) Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQI 59 L+ ++K + G D++ + V N +++ R + Sbjct: 44 ELAKMPRLKFIQVVTAGLDHLPWESIPP-HVTVAGNAGSNGYGNERVWRQMVMEAVRNL 101 >d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132 Score = 45.8 bits (108), Expect = 1e-06 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%) Query: 1 MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60 +++ A+K+ +G IGT+ VDL A++ GI V N PF ++ E+ + + I Sbjct: 63 VINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVA--GKLIK 120 Query: 61 VANESTHKGKW 71 ++ + Sbjct: 121 YSDNGSTLSAV 131 >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181 Score = 45.5 bits (106), Expect = 1e-06 Identities = 10/40 (25%), Positives = 20/40 (50%) Query: 43 TTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVEAG 82 AE A++L+LA ++I E +G + + + + G Sbjct: 3 AVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLIQG 42 >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199 Score = 44.8 bits (104), Expect = 2e-06 Identities = 8/34 (23%), Positives = 13/34 (38%) Query: 44 TAEHAISLMLAIARQIPVANESTHKGKWEKFNFM 77 AE A++ L + R + G +EK Sbjct: 5 IAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTF 38 >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193 Score = 44.7 bits (104), Expect = 2e-06 Identities = 5/31 (16%), Positives = 15/31 (48%) Query: 43 TTAEHAISLMLAIARQIPVANESTHKGKWEK 73 TA+ + +L + R+ +++ +G + Sbjct: 2 ETADSTLCHILNLYRRATWLHQALREGTRVQ 32 >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204 Score = 23.8 bits (51), Expect = 4.6 Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 10/73 (13%) Query: 4 HAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHA-ISLMLAIARQIPVA 62 HA +K + D LVV++ G + T EH ++ + + + Sbjct: 77 HADYIKNMITGAAQMDGAILVVSAADGPMPQ---------TREHILLARQVGVPYIVVFM 127 Query: 63 NESTHKGKWEKFN 75 N+ E + Sbjct: 128 NKVDMVDDPELLD 140 >d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 165 Score = 23.7 bits (51), Expect = 4.8 Identities = 8/36 (22%), Positives = 17/36 (47%) Query: 32 VVMNTPFGNSITTAEHAISLMLAIARQIPVANESTH 67 VV++ G+ +A ++ I Q+PV ++ Sbjct: 12 VVVHMGIGHGGRDLANAEDILGEITGQMPVRTKAKR 47 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.318 0.131 0.371 Gapped Lambda K H 0.267 0.0572 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 279,241 Number of extensions: 9851 Number of successful extensions: 42 Number of sequences better than 10.0: 1 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 22 Length of query: 82 Length of database: 2,407,596 Length adjustment: 48 Effective length of query: 34 Effective length of database: 1,748,556 Effective search space: 59450904 Effective search space used: 59450904 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.2 bits)