RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780152|ref|YP_003064565.1| D-3-phosphoglycerate
dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
         (82 letters)



>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase
           {Pseudomonas sp., strain 101 [TaxId: 306]}
          Length = 186

 Score = 63.4 bits (154), Expect = 5e-12
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 8/79 (10%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHA--------ISLM 52
            ++ AK +K+   AGIG+D+VDL  A    + V    + NS T    A        I   
Sbjct: 107 RIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILEC 166

Query: 53  LAIARQIPVANESTHKGKW 71
               R I         G  
Sbjct: 167 FFEGRPIRDEYLIVQGGAL 185


>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase
           {Lactobacillus helveticus [TaxId: 1587]}
          Length = 134

 Score = 59.2 bits (143), Expect = 9e-11
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 4   HAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVAN 63
               +  +    +G DN+D+  A   G  + N P     +   HA+  M+  A      N
Sbjct: 66  ADNGITKMSLRNVGVDNIDMAKAKELGFQITNVP---VYSYTTHAVRNMVVKAFDN---N 119

Query: 64  ESTHKGKWEKF 74
               +GK  + 
Sbjct: 120 LELVEGKEAET 130


>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor
           CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}
          Length = 133

 Score = 56.9 bits (137), Expect = 4e-10
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60
            L   K ++++ R G G DN+D+  A   GI V N P   S+ + + +I +    AR+I 
Sbjct: 59  DLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVP-AASVYSEQASIEMREEAAREIR 117

Query: 61  VANESTHKGKW 71
            A         
Sbjct: 118 RAITGRIPDSL 128


>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate
           dehydrogenase {Lactobacillus casei [TaxId: 1582]}
          Length = 131

 Score = 55.8 bits (134), Expect = 1e-09
 Identities = 14/66 (21%), Positives = 24/66 (36%)

Query: 4   HAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVAN 63
           HA  +K +    +GTDN+D+    + GI + N P              +  +   +    
Sbjct: 65  HAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGE 124

Query: 64  ESTHKG 69
            ST   
Sbjct: 125 TSTEVT 130


>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase
           {Hyphomicrobium methylovorum [TaxId: 84]}
          Length = 129

 Score = 54.2 bits (130), Expect = 3e-09
 Identities = 16/59 (27%), Positives = 23/59 (38%)

Query: 7   KMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVANES 65
            +K +    IG D++DL      GI V N P G +    + A      I      A+ S
Sbjct: 67  NIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDALFGGADMS 125


>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 130

 Score = 53.6 bits (128), Expect = 4e-09
 Identities = 22/68 (32%), Positives = 36/68 (52%)

Query: 4   HAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIPVAN 63
            A K+K+V RAG+G DNVD+  A+  G++V+N P   S   A+      +A + ++ +A 
Sbjct: 61  AAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAG 120

Query: 64  ESTHKGKW 71
           E       
Sbjct: 121 EFVPDAVN 128


>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase
          {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 184

 Score = 48.4 bits (114), Expect = 1e-07
 Identities = 16/38 (42%), Positives = 26/38 (68%)

Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFM 77
          N  + AEHA++L+LA +RQIP A+ S  +  W++ +F 
Sbjct: 1  NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFS 38


>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase
          {Lactobacillus helveticus [TaxId: 1587]}
          Length = 197

 Score = 48.3 bits (113), Expect = 2e-07
 Identities = 10/38 (26%), Positives = 13/38 (34%)

Query: 43 TTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80
            AEHA      I RQ    +E   +        +G E
Sbjct: 3  AIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGRE 40


>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase
          {Escherichia coli [TaxId: 562]}
          Length = 188

 Score = 48.1 bits (113), Expect = 2e-07
 Identities = 13/41 (31%), Positives = 19/41 (46%)

Query: 40 NSITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVE 80
          N+ + AE  I  +L + R +P AN   H+G   K      E
Sbjct: 1  NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFE 41


>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas
          sp., strain 101 [TaxId: 306]}
          Length = 188

 Score = 47.3 bits (111), Expect = 3e-07
 Identities = 10/37 (27%), Positives = 20/37 (54%)

Query: 42 ITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMG 78
          I+ AEH + ++L++ R    ++E   KG W   + + 
Sbjct: 1  ISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVS 37


>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase
          {Hyphomicrobium methylovorum [TaxId: 84]}
          Length = 191

 Score = 46.4 bits (109), Expect = 6e-07
 Identities = 9/37 (24%), Positives = 17/37 (45%)

Query: 41 SITTAEHAISLMLAIARQIPVANESTHKGKWEKFNFM 77
          ++ TAE A+ L+L  AR+     +      W  +  +
Sbjct: 2  TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPL 38


>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase
           {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
          Length = 121

 Score = 46.1 bits (109), Expect = 8e-07
 Identities = 7/59 (11%), Positives = 18/59 (30%), Gaps = 1/59 (1%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQI 59
            L+   ++K +     G D++         + V      N          +++   R +
Sbjct: 44  ELAKMPRLKFIQVVTAGLDHLPWESIPP-HVTVAGNAGSNGYGNERVWRQMVMEAVRNL 101


>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate
           dehydrogenase {Escherichia coli [TaxId: 562]}
          Length = 132

 Score = 45.8 bits (108), Expect = 1e-06
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 1   MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60
           +++ A+K+  +G   IGT+ VDL  A++ GI V N PF ++    E+    +    + I 
Sbjct: 63  VINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVA--GKLIK 120

Query: 61  VANESTHKGKW 71
            ++  +     
Sbjct: 121 YSDNGSTLSAV 131


>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase
          {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
          Length = 181

 Score = 45.5 bits (106), Expect = 1e-06
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 43 TTAEHAISLMLAIARQIPVANESTHKGKWEKFNFMGVEAG 82
            AE A++L+LA  ++I    E   +G + +   + +  G
Sbjct: 3  AVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLIQG 42


>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase
          {Lactobacillus casei [TaxId: 1582]}
          Length = 199

 Score = 44.8 bits (104), Expect = 2e-06
 Identities = 8/34 (23%), Positives = 13/34 (38%)

Query: 44 TAEHAISLMLAIARQIPVANESTHKGKWEKFNFM 77
           AE A++  L + R +         G +EK    
Sbjct: 5  IAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTF 38


>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human
          (Homo sapiens), Ctbp1 [TaxId: 9606]}
          Length = 193

 Score = 44.7 bits (104), Expect = 2e-06
 Identities = 5/31 (16%), Positives = 15/31 (48%)

Query: 43 TTAEHAISLMLAIARQIPVANESTHKGKWEK 73
           TA+  +  +L + R+    +++  +G   +
Sbjct: 2  ETADSTLCHILNLYRRATWLHQALREGTRVQ 32


>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
           (G) domain {Thermus thermophilus [TaxId: 274]}
          Length = 204

 Score = 23.8 bits (51), Expect = 4.6
 Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 10/73 (13%)

Query: 4   HAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHA-ISLMLAIARQIPVA 62
           HA  +K +       D   LVV++  G +           T EH  ++  + +   +   
Sbjct: 77  HADYIKNMITGAAQMDGAILVVSAADGPMPQ---------TREHILLARQVGVPYIVVFM 127

Query: 63  NESTHKGKWEKFN 75
           N+       E  +
Sbjct: 128 NKVDMVDDPELLD 140


>d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon
          Haloarcula marismortui [TaxId: 2238]}
          Length = 165

 Score = 23.7 bits (51), Expect = 4.8
 Identities = 8/36 (22%), Positives = 17/36 (47%)

Query: 32 VVMNTPFGNSITTAEHAISLMLAIARQIPVANESTH 67
          VV++   G+      +A  ++  I  Q+PV  ++  
Sbjct: 12 VVVHMGIGHGGRDLANAEDILGEITGQMPVRTKAKR 47


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0572    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 279,241
Number of extensions: 9851
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 38
Number of HSP's successfully gapped: 22
Length of query: 82
Length of database: 2,407,596
Length adjustment: 48
Effective length of query: 34
Effective length of database: 1,748,556
Effective search space: 59450904
Effective search space used: 59450904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)