BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780152|ref|YP_003064565.1| D-3-phosphoglycerate
dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
         (82 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780152|ref|YP_003064565.1| D-3-phosphoglycerate dehydrogenase [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 82

 Score =  167 bits (423), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 82/82 (100%), Positives = 82/82 (100%)

Query: 1  MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60
          MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP
Sbjct: 1  MLSHAKKMKVVGRAGIGTDNVDLVVASRAGIVVMNTPFGNSITTAEHAISLMLAIARQIP 60

Query: 61 VANESTHKGKWEKFNFMGVEAG 82
          VANESTHKGKWEKFNFMGVEAG
Sbjct: 61 VANESTHKGKWEKFNFMGVEAG 82


>gi|254781078|ref|YP_003065491.1| hypothetical protein CLIBASIA_04900 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 242

 Score = 23.1 bits (48), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 8/33 (24%), Positives = 20/33 (60%)

Query: 41 SITTAEHAISLMLAIARQIPVANESTHKGKWEK 73
          SI    H++++ L + R+I + NE+ +  +++ 
Sbjct: 16 SIVVPNHSLAVDLYLPRKIDLFNEADNNVEYQD 48


>gi|254780707|ref|YP_003065120.1| putative phosphate-binding periplasmic protein [Candidatus
          Liberibacter asiaticus str. psy62]
          Length = 346

 Score = 21.9 bits (45), Expect = 2.2,   Method: Composition-based stats.
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 15 GIGTDNVDLVVASR 28
          GIG D +D+V +SR
Sbjct: 74 GIGDDTIDIVNSSR 87


>gi|254780831|ref|YP_003065244.1| hypothetical protein CLIBASIA_03620 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 341

 Score = 21.6 bits (44), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 3/38 (7%)

Query: 17  GTDNVDLVVASR---AGIVVMNTPFGNSITTAEHAISL 51
           GT +  L +A +   +G+V+++TP   ++   + AIS+
Sbjct: 213 GTGDAHLTIAQKIPLSGVVIVSTPQDLALIDVKRAISM 250


>gi|254780300|ref|YP_003064713.1| aspartate carbamoyltransferase catalytic subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 316

 Score = 20.8 bits (42), Expect = 4.6,   Method: Composition-based stats.
 Identities = 8/31 (25%), Positives = 16/31 (51%)

Query: 19  DNVDLVVASRAGIVVMNTPFGNSITTAEHAI 49
           D +  + A R  I+V+  P+  ++ +  H I
Sbjct: 93  DTIATLNALRPNIIVIRHPYSGAVNSLMHKI 123


>gi|255764497|ref|YP_003065010.2| ABC transporter permease [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 587

 Score = 20.4 bits (41), Expect = 6.3,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 55  IARQIPVANESTHKGKWEKFNFMGV 79
           I R +   + S     W+KF ++GV
Sbjct: 161 IPRDLEEVSRSFRLSGWQKFWYLGV 185


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.318    0.131    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,674
Number of Sequences: 1233
Number of extensions: 1480
Number of successful extensions: 7
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 82
length of database: 328,796
effective HSP length: 51
effective length of query: 31
effective length of database: 265,913
effective search space:  8243303
effective search space used:  8243303
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 31 (16.5 bits)