RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780154|ref|YP_003064567.1| hypothetical protein
CLIBASIA_00185 [Candidatus Liberibacter asiaticus str. psy62]
         (68 letters)



>3gv5_B DNA polymerase IOTA; Y-family polymerase, polymerase IOTA,
          error prone replication, DNA damage, DNA repair; HET:
          DNA MSE ADI; 2.00A {Homo sapiens} PDB: 2dpj_A* 2fll_A*
          2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A*
          3g6x_A* 3gv7_B* 3gv8_B* 3h4d_A* 3h4b_A* 2alz_A* 3h40_A*
          1t3n_A* 1zet_A* (B:1-37,B:98-238)
          Length = 178

 Score = 24.0 bits (51), Expect = 7.8
 Identities = 6/22 (27%), Positives = 13/22 (59%)

Query: 40 KLSTKYREIVESYTPAMEGISI 61
          + S K  E++E ++P +E +  
Sbjct: 44 EXSYKVTELLEEFSPVVERLGF 65


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.314    0.130    0.341 

Gapped
Lambda     K      H
   0.267   0.0489    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 432,006
Number of extensions: 13094
Number of successful extensions: 27
Number of sequences better than 10.0: 1
Number of HSP's gapped: 27
Number of HSP's successfully gapped: 3
Length of query: 68
Length of database: 4,956,049
Length adjustment: 35
Effective length of query: 33
Effective length of database: 3,772,874
Effective search space: 124504842
Effective search space used: 124504842
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 50 (23.6 bits)