RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780154|ref|YP_003064567.1| hypothetical protein CLIBASIA_00185 [Candidatus Liberibacter asiaticus str. psy62] (68 letters) >3gv5_B DNA polymerase IOTA; Y-family polymerase, polymerase IOTA, error prone replication, DNA damage, DNA repair; HET: DNA MSE ADI; 2.00A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3h4d_A* 3h4b_A* 2alz_A* 3h40_A* 1t3n_A* 1zet_A* (B:1-37,B:98-238) Length = 178 Score = 24.0 bits (51), Expect = 7.8 Identities = 6/22 (27%), Positives = 13/22 (59%) Query: 40 KLSTKYREIVESYTPAMEGISI 61 + S K E++E ++P +E + Sbjct: 44 EXSYKVTELLEEFSPVVERLGF 65 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.314 0.130 0.341 Gapped Lambda K H 0.267 0.0489 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 432,006 Number of extensions: 13094 Number of successful extensions: 27 Number of sequences better than 10.0: 1 Number of HSP's gapped: 27 Number of HSP's successfully gapped: 3 Length of query: 68 Length of database: 4,956,049 Length adjustment: 35 Effective length of query: 33 Effective length of database: 3,772,874 Effective search space: 124504842 Effective search space used: 124504842 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 50 (23.6 bits)