RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780154|ref|YP_003064567.1| hypothetical protein
CLIBASIA_00185 [Candidatus Liberibacter asiaticus str. psy62]
         (68 letters)



>d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 389

 Score = 24.5 bits (52), Expect = 2.3
 Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 4/31 (12%)

Query: 39  AKLSTKYREIVESYTPAMEGISI----IDVT 65
            + S K  +I +S    +E  SI    +D+ 
Sbjct: 132 RRESRKALKIFKSACDLVERASIDEVFLDLG 162


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.130    0.341 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 220,763
Number of extensions: 7469
Number of successful extensions: 16
Number of sequences better than 10.0: 1
Number of HSP's gapped: 16
Number of HSP's successfully gapped: 6
Length of query: 68
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 31
Effective length of database: 1,899,586
Effective search space: 58887166
Effective search space used: 58887166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.3 bits)