RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780154|ref|YP_003064567.1| hypothetical protein CLIBASIA_00185 [Candidatus Liberibacter asiaticus str. psy62] (68 letters) >d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 389 Score = 24.5 bits (52), Expect = 2.3 Identities = 8/31 (25%), Positives = 14/31 (45%), Gaps = 4/31 (12%) Query: 39 AKLSTKYREIVESYTPAMEGISI----IDVT 65 + S K +I +S +E SI +D+ Sbjct: 132 RRESRKALKIFKSACDLVERASIDEVFLDLG 162 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.314 0.130 0.341 Gapped Lambda K H 0.267 0.0552 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 220,763 Number of extensions: 7469 Number of successful extensions: 16 Number of sequences better than 10.0: 1 Number of HSP's gapped: 16 Number of HSP's successfully gapped: 6 Length of query: 68 Length of database: 2,407,596 Length adjustment: 37 Effective length of query: 31 Effective length of database: 1,899,586 Effective search space: 58887166 Effective search space used: 58887166 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 47 (22.3 bits)