BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780154|ref|YP_003064567.1| hypothetical protein
CLIBASIA_00185 [Candidatus Liberibacter asiaticus str. psy62]
(68 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780154|ref|YP_003064567.1| hypothetical protein CLIBASIA_00185 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 68
Score = 135 bits (341), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 68/68 (100%), Positives = 68/68 (100%)
Query: 1 MDHRKKTIVLITILSTLAGCDSESKKIEKNINDTRRENAKLSTKYREIVESYTPAMEGIS 60
MDHRKKTIVLITILSTLAGCDSESKKIEKNINDTRRENAKLSTKYREIVESYTPAMEGIS
Sbjct: 1 MDHRKKTIVLITILSTLAGCDSESKKIEKNINDTRRENAKLSTKYREIVESYTPAMEGIS 60
Query: 61 IIDVTLVI 68
IIDVTLVI
Sbjct: 61 IIDVTLVI 68
>gi|255764478|ref|YP_003065205.2| aminopeptidase protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 418
Score = 21.9 bits (45), Expect = 2.2, Method: Composition-based stats.
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 37 ENAKLSTKYREIVESYTPAMEGISIIDVTLVI 68
++ K+S + +++Y PA+E IS D+ I
Sbjct: 121 DSDKVSRVNQAYLKAYKPALERISNFDINWSI 152
>gi|254780859|ref|YP_003065272.1| NADH dehydrogenase subunit G [Candidatus Liberibacter asiaticus
str. psy62]
Length = 700
Score = 21.6 bits (44), Expect = 2.9, Method: Composition-based stats.
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 33 DTRRENAKLSTKYREIVESYTPAMEGISIIDVTLVI 68
D R+ L Y + P ++GI D L+I
Sbjct: 347 DCRQNGEYLDPSYGRASYIFNPTIQGIEEADAMLII 382
>gi|254780871|ref|YP_003065284.1| lipoprotein-releasing system ATP-binding protein lolD [Candidatus
Liberibacter asiaticus str. psy62]
Length = 227
Score = 20.8 bits (42), Expect = 4.1, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 37 ENAKLSTKYREIVESYTPAMEGISII 62
EN LS K EIV +P+ G S I
Sbjct: 27 ENVHLSLKKGEIVALVSPSGTGKSTI 52
>gi|254780849|ref|YP_003065262.1| chaperonin GroEL [Candidatus Liberibacter asiaticus str. psy62]
Length = 551
Score = 20.8 bits (42), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 6 KTIVLITILSTLAGCDSESKKIEKNINDTRR--ENAKLSTKYREIVESYTPAMEGISIID 63
K +V+ +T+ G + S++IE IN+ ++ E+ K ++ E G+++++
Sbjct: 321 KKVVMSKDDTTIVGGNGPSERIEGRINEIQKAIEDTKSDYDRDKLKERLAKLAGGVAVLE 380
Query: 64 V 64
V
Sbjct: 381 V 381
>gi|254780791|ref|YP_003065204.1| exodeoxyribonuclease VII large subunit [Candidatus Liberibacter
asiaticus str. psy62]
Length = 529
Score = 20.8 bits (42), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 42 STKYREIVESYTPAMEG 58
S+KY+ I+ES P+ G
Sbjct: 98 SSKYQIIIESLIPSGSG 114
>gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 884
Score = 20.4 bits (41), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 8 IVLITILSTLAGCDSESKKIEKN 30
+ +T L +AGC K+E+
Sbjct: 798 VFAVTKLGNVAGCKVSEGKVERG 820
>gi|254781000|ref|YP_003065413.1| tRNA (uracil-5-)-methyltransferase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 371
Score = 20.4 bits (41), Expect = 5.8, Method: Composition-based stats.
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 27 IEKNINDTRRENAKLSTKYREIVESYTPAMEGISI 61
++++ D R A + YR+I S+T GI++
Sbjct: 162 LDRDYVDERLTVAGRTLIYRQIENSFTQPNAGINV 196
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.314 0.130 0.341
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,221
Number of Sequences: 1233
Number of extensions: 1187
Number of successful extensions: 15
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of query: 68
length of database: 328,796
effective HSP length: 39
effective length of query: 29
effective length of database: 280,709
effective search space: 8140561
effective search space used: 8140561
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 31 (16.5 bits)