Query         gi|254780155|ref|YP_003064568.1| hypothetical protein CLIBASIA_00190 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 31
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Sun May 22 16:41:31 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780155.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1bf5a3 d.93.1.1 (A:569-710) S  17.3     9.3 0.00068   18.0  -0.7   16   15-30      8-23  (142)
  2 d1zpsa1 b.168.1.1 (A:8-131) Ph   6.8      34  0.0025   15.4  -0.7   11   16-26     30-40  (124)
  3 d2gysa3 b.1.2.1 (A:218-316) Co   3.6      96   0.007   13.3  -0.3   10   21-30     89-98  (99)
  4 d1x6va1 b.122.1.3 (A:229-389)    2.7 1.3E+02  0.0098   12.7  -0.2   10   18-27     51-60  (161)
  5 d2ffta1 g.88.1.1 (A:2-84) Thyl   2.6 2.1E+02   0.015   11.8   0.7   15   12-26     13-27  (83)
  6 d1v47a1 b.122.1.3 (A:4-135) AT   2.5   1E+02  0.0073   13.2  -1.2   11   18-28     27-37  (132)
  7 d1xoub_ a.231.1.2 (B:) EspA ch   2.4 2.1E+02   0.015   11.8   0.3   13   16-28     57-69  (84)
  8 d1vyia_ d.293.1.1 (A:) Phospho   2.3 2.2E+02   0.016   11.7   0.4   13   13-25     73-85  (111)
  9 d1g8fa1 b.122.1.3 (A:2-168) AT   2.0 1.8E+02   0.013   12.1  -0.4   11   17-27     55-65  (167)
 10 d1uura3 d.93.1.1 (A:577-707) S   1.7 2.1E+02   0.015   11.8  -0.4   15   16-30     11-25  (131)

No 1  
>d1bf5a3 d.93.1.1 (A:569-710) STAT-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.29  E-value=9.3  Score=17.97  Aligned_cols=16  Identities=44%  Similarity=1.095  Sum_probs=11.7

Q ss_pred             HHHHHHHCCHHHHCCC
Q ss_conf             5455442510231016
Q gi|254780155|r   15 DCILGYMNKEEEKLIL   30 (31)
Q Consensus        15 dcilgymnkeeeklil   30 (31)
                      .||.|+++|++++-+|
T Consensus         8 G~I~GFIsK~~a~~~L   23 (142)
T d1bf5a3           8 GCIMGFISKERERALL   23 (142)
T ss_dssp             TCCCCCCCHHHHHHHT
T ss_pred             CEEEEEECHHHHHHHH
T ss_conf             8799995599999996


No 2  
>d1zpsa1 b.168.1.1 (A:8-131) Phosphoribosyl-AMP cyclohydrolase HisI {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=6.84  E-value=34  Score=15.41  Aligned_cols=11  Identities=36%  Similarity=0.688  Sum_probs=6.7

Q ss_pred             HHHHHHCCHHH
Q ss_conf             45544251023
Q gi|254780155|r   16 CILGYMNKEEE   26 (31)
Q Consensus        16 cilgymnkeee   26 (31)
                      -.++|||+|.-
T Consensus        30 LMlaymN~eAl   40 (124)
T d1zpsa1          30 LMVAYMNREAL   40 (124)
T ss_dssp             EEEEEECHHHH
T ss_pred             EEEEECCHHHH
T ss_conf             99997699999


No 3  
>d2gysa3 b.1.2.1 (A:218-316) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.56  E-value=96  Score=13.33  Aligned_cols=10  Identities=30%  Similarity=0.268  Sum_probs=6.2

Q ss_pred             HCCHHHHCCC
Q ss_conf             2510231016
Q gi|254780155|r   21 MNKEEEKLIL   30 (31)
Q Consensus        21 mnkeeeklil   30 (31)
                      --|||||+|.
T Consensus        89 rp~eeeK~I~   98 (99)
T d2gysa3          89 QPRRAEKHIK   98 (99)
T ss_dssp             EECCCCEEEE
T ss_pred             EECCCCCEEC
T ss_conf             7633224013


No 4  
>d1x6va1 b.122.1.3 (A:229-389) ATP sulfurylase N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.71  E-value=1.3e+02  Score=12.65  Aligned_cols=10  Identities=30%  Similarity=0.458  Sum_probs=5.6

Q ss_pred             HHHHCCHHHH
Q ss_conf             5442510231
Q gi|254780155|r   18 LGYMNKEEEK   27 (31)
Q Consensus        18 lgymnkeeek   27 (31)
                      -|+||+++-.
T Consensus        51 ~GFM~~~d~~   60 (161)
T d1x6va1          51 NGFMREREYL   60 (161)
T ss_dssp             CSSCCHHHHH
T ss_pred             CCCCCHHHHH
T ss_conf             3535489999


No 5  
>d2ffta1 g.88.1.1 (A:2-84) Thylakoid soluble phosphoprotein TSP9 {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=2.60  E-value=2.1e+02  Score=11.75  Aligned_cols=15  Identities=33%  Similarity=0.642  Sum_probs=11.9

Q ss_pred             CCHHHHHHHHCCHHH
Q ss_conf             854545544251023
Q gi|254780155|r   12 NSMDCILGYMNKEEE   26 (31)
Q Consensus        12 nsmdcilgymnkeee   26 (31)
                      +-.|.|||.|.||..
T Consensus        13 g~idw~lg~~~KeDQ   27 (83)
T d2ffta1          13 SFVDWLLGKITKEDQ   27 (83)
T ss_dssp             SHHHHHHHHHSCCCC
T ss_pred             CHHHHHHCCCCCCCC
T ss_conf             238988514645431


No 6  
>d1v47a1 b.122.1.3 (A:4-135) ATP sulfurylase N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=2.45  E-value=1e+02  Score=13.24  Aligned_cols=11  Identities=36%  Similarity=0.610  Sum_probs=6.4

Q ss_pred             HHHHCCHHHHC
Q ss_conf             54425102310
Q gi|254780155|r   18 LGYMNKEEEKL   28 (31)
Q Consensus        18 lgymnkeeekl   28 (31)
                      -|+||++|-+-
T Consensus        27 ~gFM~~~d~~s   37 (132)
T d1v47a1          27 KGFMTREEALS   37 (132)
T ss_dssp             CSBCCHHHHHH
T ss_pred             CCCCCHHHHHH
T ss_conf             66678999999


No 7  
>d1xoub_ a.231.1.2 (B:) EspA chaperone CesA {Escherichia coli [TaxId: 562]}
Probab=2.36  E-value=2.1e+02  Score=11.81  Aligned_cols=13  Identities=54%  Similarity=0.662  Sum_probs=10.1

Q ss_pred             HHHHHHCCHHHHC
Q ss_conf             4554425102310
Q gi|254780155|r   16 CILGYMNKEEEKL   28 (31)
Q Consensus        16 cilgymnkeeekl   28 (31)
                      -|-||.+.||.||
T Consensus        57 liegyt~geerkl   69 (84)
T d1xoub_          57 LIEGYTYGEERKL   69 (84)
T ss_dssp             HHHHHHHSHHHHH
T ss_pred             HHHHHCCHHHHHH
T ss_conf             9875031079988


No 8  
>d1vyia_ d.293.1.1 (A:) Phosphoprotein M1, C-terminal domain {Rabies virus, strain CVS-11 [TaxId: 11292]}
Probab=2.27  E-value=2.2e+02  Score=11.68  Aligned_cols=13  Identities=23%  Similarity=0.828  Sum_probs=8.4

Q ss_pred             CHHHHHHHHCCHH
Q ss_conf             5454554425102
Q gi|254780155|r   13 SMDCILGYMNKEE   25 (31)
Q Consensus        13 smdcilgymnkee   25 (31)
                      ...||||+..-..
T Consensus        73 PLRCiLG~Va~~~   85 (111)
T d1vyia_          73 PLRCVLGWVALAN   85 (111)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             CHHHHEEHHCCCC
T ss_conf             6524120100044


No 9  
>d1g8fa1 b.122.1.3 (A:2-168) ATP sulfurylase N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=1.99  E-value=1.8e+02  Score=12.07  Aligned_cols=11  Identities=18%  Similarity=0.667  Sum_probs=6.1

Q ss_pred             HHHHHCCHHHH
Q ss_conf             55442510231
Q gi|254780155|r   17 ILGYMNKEEEK   27 (31)
Q Consensus        17 ilgymnkeeek   27 (31)
                      .-|+||++|-.
T Consensus        55 L~GFM~~~d~~   65 (167)
T d1g8fa1          55 LTGFLNENDYS   65 (167)
T ss_dssp             CCEECCHHHHH
T ss_pred             CCCCCCHHHHH
T ss_conf             56545589999


No 10 
>d1uura3 d.93.1.1 (A:577-707) STAT homologue {Dictyostelium discoideum [TaxId: 44689]}
Probab=1.72  E-value=2.1e+02  Score=11.76  Aligned_cols=15  Identities=40%  Similarity=0.625  Sum_probs=0.0

Q ss_pred             HHHHHHCCHHHHCCC
Q ss_conf             455442510231016
Q gi|254780155|r   16 CILGYMNKEEEKLIL   30 (31)
Q Consensus        16 cilgymnkeeeklil   30 (31)
                      +|.|.|.++|..-+|
T Consensus        11 ~~~G~isr~~ae~~L   25 (131)
T d1uura3          11 IIYGYMGRQEVNDAL   25 (131)
T ss_dssp             SSCBSCCHHHHHHTT
T ss_pred             CEECCCCHHHHHHHH
T ss_conf             277238999999997


Done!