Query gi|254780155|ref|YP_003064568.1| hypothetical protein CLIBASIA_00190 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 31 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Sun May 22 16:41:31 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780155.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1bf5a3 d.93.1.1 (A:569-710) S 17.3 9.3 0.00068 18.0 -0.7 16 15-30 8-23 (142) 2 d1zpsa1 b.168.1.1 (A:8-131) Ph 6.8 34 0.0025 15.4 -0.7 11 16-26 30-40 (124) 3 d2gysa3 b.1.2.1 (A:218-316) Co 3.6 96 0.007 13.3 -0.3 10 21-30 89-98 (99) 4 d1x6va1 b.122.1.3 (A:229-389) 2.7 1.3E+02 0.0098 12.7 -0.2 10 18-27 51-60 (161) 5 d2ffta1 g.88.1.1 (A:2-84) Thyl 2.6 2.1E+02 0.015 11.8 0.7 15 12-26 13-27 (83) 6 d1v47a1 b.122.1.3 (A:4-135) AT 2.5 1E+02 0.0073 13.2 -1.2 11 18-28 27-37 (132) 7 d1xoub_ a.231.1.2 (B:) EspA ch 2.4 2.1E+02 0.015 11.8 0.3 13 16-28 57-69 (84) 8 d1vyia_ d.293.1.1 (A:) Phospho 2.3 2.2E+02 0.016 11.7 0.4 13 13-25 73-85 (111) 9 d1g8fa1 b.122.1.3 (A:2-168) AT 2.0 1.8E+02 0.013 12.1 -0.4 11 17-27 55-65 (167) 10 d1uura3 d.93.1.1 (A:577-707) S 1.7 2.1E+02 0.015 11.8 -0.4 15 16-30 11-25 (131) No 1 >d1bf5a3 d.93.1.1 (A:569-710) STAT-1 {Human (Homo sapiens) [TaxId: 9606]} Probab=17.29 E-value=9.3 Score=17.97 Aligned_cols=16 Identities=44% Similarity=1.095 Sum_probs=11.7 Q ss_pred HHHHHHHCCHHHHCCC Q ss_conf 5455442510231016 Q gi|254780155|r 15 DCILGYMNKEEEKLIL 30 (31) Q Consensus 15 dcilgymnkeeeklil 30 (31) .||.|+++|++++-+| T Consensus 8 G~I~GFIsK~~a~~~L 23 (142) T d1bf5a3 8 GCIMGFISKERERALL 23 (142) T ss_dssp TCCCCCCCHHHHHHHT T ss_pred CEEEEEECHHHHHHHH T ss_conf 8799995599999996 No 2 >d1zpsa1 b.168.1.1 (A:8-131) Phosphoribosyl-AMP cyclohydrolase HisI {Methanobacterium thermoautotrophicum [TaxId: 145262]} Probab=6.84 E-value=34 Score=15.41 Aligned_cols=11 Identities=36% Similarity=0.688 Sum_probs=6.7 Q ss_pred HHHHHHCCHHH Q ss_conf 45544251023 Q gi|254780155|r 16 CILGYMNKEEE 26 (31) Q Consensus 16 cilgymnkeee 26 (31) -.++|||+|.- T Consensus 30 LMlaymN~eAl 40 (124) T d1zpsa1 30 LMVAYMNREAL 40 (124) T ss_dssp EEEEEECHHHH T ss_pred EEEEECCHHHH T ss_conf 99997699999 No 3 >d2gysa3 b.1.2.1 (A:218-316) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]} Probab=3.56 E-value=96 Score=13.33 Aligned_cols=10 Identities=30% Similarity=0.268 Sum_probs=6.2 Q ss_pred HCCHHHHCCC Q ss_conf 2510231016 Q gi|254780155|r 21 MNKEEEKLIL 30 (31) Q Consensus 21 mnkeeeklil 30 (31) --|||||+|. T Consensus 89 rp~eeeK~I~ 98 (99) T d2gysa3 89 QPRRAEKHIK 98 (99) T ss_dssp EECCCCEEEE T ss_pred EECCCCCEEC T ss_conf 7633224013 No 4 >d1x6va1 b.122.1.3 (A:229-389) ATP sulfurylase N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Probab=2.71 E-value=1.3e+02 Score=12.65 Aligned_cols=10 Identities=30% Similarity=0.458 Sum_probs=5.6 Q ss_pred HHHHCCHHHH Q ss_conf 5442510231 Q gi|254780155|r 18 LGYMNKEEEK 27 (31) Q Consensus 18 lgymnkeeek 27 (31) -|+||+++-. T Consensus 51 ~GFM~~~d~~ 60 (161) T d1x6va1 51 NGFMREREYL 60 (161) T ss_dssp CSSCCHHHHH T ss_pred CCCCCHHHHH T ss_conf 3535489999 No 5 >d2ffta1 g.88.1.1 (A:2-84) Thylakoid soluble phosphoprotein TSP9 {Spinach (Spinacia oleracea) [TaxId: 3562]} Probab=2.60 E-value=2.1e+02 Score=11.75 Aligned_cols=15 Identities=33% Similarity=0.642 Sum_probs=11.9 Q ss_pred CCHHHHHHHHCCHHH Q ss_conf 854545544251023 Q gi|254780155|r 12 NSMDCILGYMNKEEE 26 (31) Q Consensus 12 nsmdcilgymnkeee 26 (31) +-.|.|||.|.||.. T Consensus 13 g~idw~lg~~~KeDQ 27 (83) T d2ffta1 13 SFVDWLLGKITKEDQ 27 (83) T ss_dssp SHHHHHHHHHSCCCC T ss_pred CHHHHHHCCCCCCCC T ss_conf 238988514645431 No 6 >d1v47a1 b.122.1.3 (A:4-135) ATP sulfurylase N-terminal domain {Thermus thermophilus [TaxId: 274]} Probab=2.45 E-value=1e+02 Score=13.24 Aligned_cols=11 Identities=36% Similarity=0.610 Sum_probs=6.4 Q ss_pred HHHHCCHHHHC Q ss_conf 54425102310 Q gi|254780155|r 18 LGYMNKEEEKL 28 (31) Q Consensus 18 lgymnkeeekl 28 (31) -|+||++|-+- T Consensus 27 ~gFM~~~d~~s 37 (132) T d1v47a1 27 KGFMTREEALS 37 (132) T ss_dssp CSBCCHHHHHH T ss_pred CCCCCHHHHHH T ss_conf 66678999999 No 7 >d1xoub_ a.231.1.2 (B:) EspA chaperone CesA {Escherichia coli [TaxId: 562]} Probab=2.36 E-value=2.1e+02 Score=11.81 Aligned_cols=13 Identities=54% Similarity=0.662 Sum_probs=10.1 Q ss_pred HHHHHHCCHHHHC Q ss_conf 4554425102310 Q gi|254780155|r 16 CILGYMNKEEEKL 28 (31) Q Consensus 16 cilgymnkeeekl 28 (31) -|-||.+.||.|| T Consensus 57 liegyt~geerkl 69 (84) T d1xoub_ 57 LIEGYTYGEERKL 69 (84) T ss_dssp HHHHHHHSHHHHH T ss_pred HHHHHCCHHHHHH T ss_conf 9875031079988 No 8 >d1vyia_ d.293.1.1 (A:) Phosphoprotein M1, C-terminal domain {Rabies virus, strain CVS-11 [TaxId: 11292]} Probab=2.27 E-value=2.2e+02 Score=11.68 Aligned_cols=13 Identities=23% Similarity=0.828 Sum_probs=8.4 Q ss_pred CHHHHHHHHCCHH Q ss_conf 5454554425102 Q gi|254780155|r 13 SMDCILGYMNKEE 25 (31) Q Consensus 13 smdcilgymnkee 25 (31) ...||||+..-.. T Consensus 73 PLRCiLG~Va~~~ 85 (111) T d1vyia_ 73 PLRCVLGWVALAN 85 (111) T ss_dssp CHHHHHHHHHHHH T ss_pred CHHHHEEHHCCCC T ss_conf 6524120100044 No 9 >d1g8fa1 b.122.1.3 (A:2-168) ATP sulfurylase N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=1.99 E-value=1.8e+02 Score=12.07 Aligned_cols=11 Identities=18% Similarity=0.667 Sum_probs=6.1 Q ss_pred HHHHHCCHHHH Q ss_conf 55442510231 Q gi|254780155|r 17 ILGYMNKEEEK 27 (31) Q Consensus 17 ilgymnkeeek 27 (31) .-|+||++|-. T Consensus 55 L~GFM~~~d~~ 65 (167) T d1g8fa1 55 LTGFLNENDYS 65 (167) T ss_dssp CCEECCHHHHH T ss_pred CCCCCCHHHHH T ss_conf 56545589999 No 10 >d1uura3 d.93.1.1 (A:577-707) STAT homologue {Dictyostelium discoideum [TaxId: 44689]} Probab=1.72 E-value=2.1e+02 Score=11.76 Aligned_cols=15 Identities=40% Similarity=0.625 Sum_probs=0.0 Q ss_pred HHHHHHCCHHHHCCC Q ss_conf 455442510231016 Q gi|254780155|r 16 CILGYMNKEEEKLIL 30 (31) Q Consensus 16 cilgymnkeeeklil 30 (31) +|.|.|.++|..-+| T Consensus 11 ~~~G~isr~~ae~~L 25 (131) T d1uura3 11 IIYGYMGRQEVNDAL 25 (131) T ss_dssp SSCBSCCHHHHHHTT T ss_pred CEECCCCHHHHHHHH T ss_conf 277238999999997 Done!