HHsearch results for GI: 254780156 and protein with PDBid: 1vdw_A

>1vdw_A Hypothetical protein PH1897; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; 1.30A {Pyrococcus horikoshii} SCOP: e.7.1.1
Probab=100.00  E-value=0  Score=384.89  Aligned_cols=245  Identities=26%  Similarity=0.372  Sum_probs=212.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCE-EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             98237999999999999999999617424034-55408995005899999999999988510000001111222234567
Q gi|254780156|r    1 MSRSALLNVMVSAALKAGKFLSRDFGEVQDLQ-VSRKGPSDFVMKSHSKCQEIIYQELLGARPKYGFYSGGKAYVGQDSI   79 (256)
Q Consensus         1 M~~~~~l~ia~~aa~~ag~~~~~~f~~~~~~~-~~~k~~~d~vT~~D~~~e~~i~~~L~~~~P~~~i~~EE~~~~~~~~~   79 (256)
                      |+.+...++|++++++|++.+++.|++....+ +.+|+++|+||++|+++|++|++.|++.+|  +|+|||++....+++
T Consensus         1 m~~~~~~~ia~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~d~vt~~D~~~e~~i~~~L~~~~~--~ii~EE~~~~~~~~~   78 (254)
T 1vdw_A            1 MSVKTWRKIAIDIIRDFDHNIMPLFGNPKASETISISPSGDETKVVDKVAENIIISKFKDLGV--NVVSEEIGRIDQGSD   78 (254)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHTGGGTTCGGGGCEEEC-----CEEHHHHHHHHHHHHHHHHTTC--EEEETTTEEECCSCS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC--CEEEECCCCCCCCCC
T ss_conf             987999999999999999999998567333735755599594439999999999999866799--989816677889988


Q ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf             13443012334678776665655666420000010011001111221133457763433210001133444105788522
Q gi|254780156|r   80 TRWIVDPLNGITNFFYAIPHFCISIALERDQEIIASVIFNPITDELYTAERGIGSFLNDRRIRVSSRRILSNSIICYATF  159 (256)
Q Consensus        80 ~~WiIDPIDGT~nf~~g~p~~~v~ial~~~g~p~~gvi~~P~~~~~~~A~~g~Ga~~n~~~i~vs~~~~l~~~~i~~~~~  159 (256)
                      ++|||||||||.||++|+|.|||+|||+++|+|++|+||+|.++++|+|.+|.|+|+|++++++++..+.....+  ...
T Consensus        79 ~~WvIDPIDGT~nf~~G~~~~~v~ial~~~g~p~~gvi~~P~~~~~~~a~~~~g~~~n~~~i~~~~~~~~~~~~~--~~~  156 (254)
T 1vdw_A           79 YTVVVDPLDGSYNFINGIPFFAVSVAIFHEKDPIYAFIYEPIVERLYEGIPGKGSYLNGEKIKVRELAEKPSISF--YTK  156 (254)
T ss_dssp             EEEEEEEEECHHHHHTTCSCCEEEEEEEETTEEEEEEEEEGGGTEEEEEETTTEEEETTEEECCCCCCSSCEEEE--ECS
T ss_pred             CEEEEECCCCHHHHHHCCCHHCCEEEEEECCCEEECCCCCCCCCCEEEECCCCEEEECCCEEECCCCCCCCCEEE--ECC
T ss_conf             589996251879997128202508789958945676324765331024315825357895611033666764144--315


Q ss_pred             CCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHCCCCCCCCCC--CCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCC-
Q ss_conf             20146778753104530267751333210000000012321126--997768315599999789389968898678889-
Q gi|254780156|r  160 KRNSRFLMQLCRIMDEAVGVRSFGSEALDLAYIAAGRFDGFLGK--GLSIWCVAAGLLIICEAGGFATDFLGKNMGAET-  236 (256)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~ir~~Gs~~l~~~~va~G~~d~~v~~--~~~~wD~aag~li~~eaGg~v~d~~G~~~~~~~-  236 (256)
                      ......       .....++|++||+++++|+||+|++|+|+..  .+++||+|||.+|++||||.++|++|+|+.+.. 
T Consensus       157 ~~~~~~-------~~~~~~~r~~gs~~~~~~~va~G~~d~~v~~~~~~~~wD~aAg~~I~~eaGg~vtd~~G~~l~~~~~  229 (254)
T 1vdw_A          157 GKGTKI-------IDKVKRTRTLGAIALELAYLARGALDAVVDIRNYLRPTDIAAGVVIAREAGAIVKDLDGKDVEITFS  229 (254)
T ss_dssp             SCCHHH-------HHTCSEEEBCSCHHHHHHHHHHTSCSEEEEEEEEECHHHHHHHHHHHHHTTCEEECTTSSBCCCCSC
T ss_pred             CCCCHH-------HHHHHHEEECCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCC
T ss_conf             653023-------4456416432828998756415763589725689977899899999997899796899986426888


Q ss_pred             ----CE-EEEECHHHHHHHHHHHCC
Q ss_conf             ----80-999397999999998659
Q gi|254780156|r  237 ----KS-IISGNMPIHEQLLAIIND  256 (256)
Q Consensus       237 ----~~-iia~n~~i~~~ll~~l~~  256 (256)
                          +. ++++|+++|++||+.|++
T Consensus       230 ~~~~~~~iaa~n~~l~~~iL~~i~k  254 (254)
T 1vdw_A          230 ATEKVNIIAANNEELLETILRSIEK  254 (254)
T ss_dssp             SSCCEEEEEESCHHHHHHHHHTCCC
T ss_pred             CCCCCCEEEECCHHHHHHHHHHHCC
T ss_conf             6667888999999999999998569