HHsearch results for GI: 254780156 and protein with PDBid: 1vdw_A
>1vdw_A Hypothetical protein PH1897; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; 1.30A {Pyrococcus horikoshii} SCOP: e.7.1.1
Probab=100.00 E-value=0 Score=384.89 Aligned_cols=245 Identities=26% Similarity=0.372 Sum_probs=212.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHCE-EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 98237999999999999999999617424034-55408995005899999999999988510000001111222234567
Q gi|254780156|r 1 MSRSALLNVMVSAALKAGKFLSRDFGEVQDLQ-VSRKGPSDFVMKSHSKCQEIIYQELLGARPKYGFYSGGKAYVGQDSI 79 (256)
Q Consensus 1 M~~~~~l~ia~~aa~~ag~~~~~~f~~~~~~~-~~~k~~~d~vT~~D~~~e~~i~~~L~~~~P~~~i~~EE~~~~~~~~~ 79 (256)
|+.+...++|++++++|++.+++.|++....+ +.+|+++|+||++|+++|++|++.|++.+| +|+|||++....+++
T Consensus 1 m~~~~~~~ia~~~a~~a~~~~~~~~~~~~~~~~~~~~~~~d~vt~~D~~~e~~i~~~L~~~~~--~ii~EE~~~~~~~~~ 78 (254)
T 1vdw_A 1 MSVKTWRKIAIDIIRDFDHNIMPLFGNPKASETISISPSGDETKVVDKVAENIIISKFKDLGV--NVVSEEIGRIDQGSD 78 (254)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTGGGTTCGGGGCEEEC-----CEEHHHHHHHHHHHHHHHHTTC--EEEETTTEEECCSCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCC--CEEEECCCCCCCCCC
T ss_conf 987999999999999999999998567333735755599594439999999999999866799--989816677889988
Q ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 13443012334678776665655666420000010011001111221133457763433210001133444105788522
Q gi|254780156|r 80 TRWIVDPLNGITNFFYAIPHFCISIALERDQEIIASVIFNPITDELYTAERGIGSFLNDRRIRVSSRRILSNSIICYATF 159 (256)
Q Consensus 80 ~~WiIDPIDGT~nf~~g~p~~~v~ial~~~g~p~~gvi~~P~~~~~~~A~~g~Ga~~n~~~i~vs~~~~l~~~~i~~~~~ 159 (256)
++|||||||||.||++|+|.|||+|||+++|+|++|+||+|.++++|+|.+|.|+|+|++++++++..+.....+ ...
T Consensus 79 ~~WvIDPIDGT~nf~~G~~~~~v~ial~~~g~p~~gvi~~P~~~~~~~a~~~~g~~~n~~~i~~~~~~~~~~~~~--~~~ 156 (254)
T 1vdw_A 79 YTVVVDPLDGSYNFINGIPFFAVSVAIFHEKDPIYAFIYEPIVERLYEGIPGKGSYLNGEKIKVRELAEKPSISF--YTK 156 (254)
T ss_dssp EEEEEEEEECHHHHHTTCSCCEEEEEEEETTEEEEEEEEEGGGTEEEEEETTTEEEETTEEECCCCCCSSCEEEE--ECS
T ss_pred CEEEEECCCCHHHHHHCCCHHCCEEEEEECCCEEECCCCCCCCCCEEEECCCCEEEECCCEEECCCCCCCCCEEE--ECC
T ss_conf 589996251879997128202508789958945676324765331024315825357895611033666764144--315
Q ss_pred CCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHCCCCCCCCCC--CCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCC-
Q ss_conf 20146778753104530267751333210000000012321126--997768315599999789389968898678889-
Q gi|254780156|r 160 KRNSRFLMQLCRIMDEAVGVRSFGSEALDLAYIAAGRFDGFLGK--GLSIWCVAAGLLIICEAGGFATDFLGKNMGAET- 236 (256)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~ir~~Gs~~l~~~~va~G~~d~~v~~--~~~~wD~aag~li~~eaGg~v~d~~G~~~~~~~- 236 (256)
...... .....++|++||+++++|+||+|++|+|+.. .+++||+|||.+|++||||.++|++|+|+.+..
T Consensus 157 ~~~~~~-------~~~~~~~r~~gs~~~~~~~va~G~~d~~v~~~~~~~~wD~aAg~~I~~eaGg~vtd~~G~~l~~~~~ 229 (254)
T 1vdw_A 157 GKGTKI-------IDKVKRTRTLGAIALELAYLARGALDAVVDIRNYLRPTDIAAGVVIAREAGAIVKDLDGKDVEITFS 229 (254)
T ss_dssp SCCHHH-------HHTCSEEEBCSCHHHHHHHHHHTSCSEEEEEEEEECHHHHHHHHHHHHHTTCEEECTTSSBCCCCSC
T ss_pred CCCCHH-------HHHHHHEEECCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCC
T ss_conf 653023-------4456416432828998756415763589725689977899899999997899796899986426888
Q ss_pred ----CE-EEEECHHHHHHHHHHHCC
Q ss_conf ----80-999397999999998659
Q gi|254780156|r 237 ----KS-IISGNMPIHEQLLAIIND 256 (256)
Q Consensus 237 ----~~-iia~n~~i~~~ll~~l~~ 256 (256)
+. ++++|+++|++||+.|++
T Consensus 230 ~~~~~~~iaa~n~~l~~~iL~~i~k 254 (254)
T 1vdw_A 230 ATEKVNIIAANNEELLETILRSIEK 254 (254)
T ss_dssp SSCCEEEEEESCHHHHHHHHHTCCC
T ss_pred CCCCCCEEEECCHHHHHHHHHHHCC
T ss_conf 6667888999999999999998569