RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780156|ref|YP_003064569.1| putative
inositol-1-monophosphatase [Candidatus Liberibacter asiaticus str.
psy62]
(256 letters)
>gnl|CDD|182704 PRK10757, PRK10757, inositol monophosphatase; Provisional.
Length = 267
Score = 159 bits (405), Expect = 4e-40
Identities = 91/258 (35%), Positives = 147/258 (56%), Gaps = 9/258 (3%)
Query: 6 LLNVMVSAALKAGKFLSRDFGEVQDLQVSRKGPSDFVMKSHSKCQEIIYQELLGARPKYG 65
+LN+ V AA KAG +++++ ++ S+KG +DFV + +I + + P++
Sbjct: 4 MLNIAVRAARKAGNLIAKNYETPDAVEASQKGSNDFVTNVDKAAEAVIIDTIRKSYPQHT 63
Query: 66 FYSGGKA-YVGQDSITRWIVDPLNGITNFFYAIPHFCISIALERDQEIIASVIFNPITDE 124
+ G+D +W++DPL+G TNF +PHF +SIA+ +V+++P+ +E
Sbjct: 64 IITEESGELEGEDQDVQWVIDPLDGTTNFIKRLPHFAVSIAVRIKGRTEVAVVYDPMRNE 123
Query: 125 LYTAERGIGSFLNDRRIRVSSRRILSNSIICYAT---FK---RNSRFLMQLCRIMDEAVG 178
L+TA RG G+ LN R+R S+ R L +I+ AT FK + ++ + ++ E
Sbjct: 124 LFTATRGQGAQLNGYRLRGSTARDLDGTIL--ATGFPFKAKQHATTYINIVGKLFTECAD 181
Query: 179 VRSFGSEALDLAYIAAGRFDGFLGKGLSIWCVAAGLLIICEAGGFATDFLGKNMGAETKS 238
R GS ALDLAY+AAGR DGF GL W AAG L++ EAGG +DF G + T +
Sbjct: 182 FRRTGSAALDLAYVAAGRVDGFFEIGLKPWDFAAGELLVREAGGIVSDFTGGHNYMLTGN 241
Query: 239 IISGNMPIHEQLLAIIND 256
I++GN + + +LA + D
Sbjct: 242 IVAGNPRVVKAMLANMRD 259
>gnl|CDD|178168 PLN02553, PLN02553, inositol-phosphate phosphatase.
Length = 270
Score = 140 bits (354), Expect = 4e-34
Identities = 89/268 (33%), Positives = 131/268 (48%), Gaps = 24/268 (8%)
Query: 1 MSRSALLNVMVSAALKAGKFLSRDFGEVQDLQVSRKGPSDFVMKSHSKCQEIIYQELLGA 60
L V V AA AG+ + + F Q V KG D V ++ C+++I+ L A
Sbjct: 5 DDLEQFLEVAVDAAKAAGQIIRKGF--YQTKHVEHKGQVDLVTETDKACEDLIFNHLKQA 62
Query: 61 RPKYGFY-------SGGKAYVGQDSITRWIVDPLNGITNFFYAIPHFCISIALERDQEII 113
P + F SGG D T WIVDPL+G TNF + P C+SI L + +
Sbjct: 63 FPSHKFIGEETTAASGGTELT--DEPT-WIVDPLDGTTNFVHGFPFVCVSIGLTIGKVPV 119
Query: 114 ASVIFNPITDELYTAERGIGSFLNDRRIRVSSRRILSNSIICYAT---FKRNSRFL---M 167
V++NPI DEL+TA +G G+FLN + I+ SS+ L +++ AT KR+ +
Sbjct: 120 VGVVYNPILDELFTAVKGKGAFLNGKPIKASSQSELGKALL--ATEVGTKRDKATVDATT 177
Query: 168 QLCRIMDEAV-GVRSFGSEALDLAYIAAGRFDGF--LGKGLSIWCVAAGLLIICEAGGFA 224
+ V +R GS AL+L +A GR D F +G G W VAAG +I+ EAGG
Sbjct: 178 NRINALLYKVRSLRMSGSCALNLCGVACGRLDIFYEIGFG-GPWDVAAGAVIVKEAGGLV 236
Query: 225 TDFLGKNMGAETKSIISGNMPIHEQLLA 252
D G ++ + + N + + +
Sbjct: 237 FDPSGGPFDIMSRRVAASNGHLKDAFVE 264
>gnl|CDD|183673 PRK12676, PRK12676, bifunctional inositol-1
monophosphatase/fructose-1,6-bisphosphatase; Reviewed.
Length = 263
Score = 127 bits (321), Expect = 3e-30
Identities = 66/223 (29%), Positives = 107/223 (47%), Gaps = 24/223 (10%)
Query: 42 VMKSHSKCQEIIYQELLGARPKYGFYSGGKAYVGQDSITRWIVDPLNGITNFFYAIPHFC 101
V+K +C II +EL G+ T ++DPL+G N IP +
Sbjct: 57 VLKPLGRCVNIISEEL------------GEIVGNGPEYT-VVLDPLDGTYNAINGIPFYA 103
Query: 102 ISIALERDQEIIASVIFNPITDELYTAERGIGSFLNDRRIRVSSRRILSNSIICYATFKR 161
ISIA+ + + + ++N T + Y A G G++LN + I+VS L+ S + ++R
Sbjct: 104 ISIAVFKGGKPVYGYVYNLATGDFYEAIPGKGAYLNGKPIKVSKTSELNESAVSIYGYRR 163
Query: 162 NSRFLMQLCRIMDEAVGVRSFGSEALDLAYIAAGRFDGF--LGKGLSIWCVAAGLLIICE 219
++L R + VR G+ AL+L Y+A+GR D F + L + +AAG LI E
Sbjct: 164 GKERTVKLGRKVRR---VRILGAIALELCYVASGRLDAFVDVRNYLRVTDIAAGKLICEE 220
Query: 220 AGGFATDFLGK------NMGAETKSIISGNMPIHEQLLAIIND 256
AGG TD G N+ T I + +H+++L ++
Sbjct: 221 AGGIVTDEDGNELKLPLNVTERTNLIAANGEELHKKILELLEG 263
>gnl|CDD|178338 PLN02737, PLN02737, inositol monophosphatase family protein.
Length = 363
Score = 91.0 bits (226), Expect = 3e-19
Identities = 67/243 (27%), Positives = 108/243 (44%), Gaps = 31/243 (12%)
Query: 33 VSRKGPSDFVMKSHSKCQEIIYQELLGARPKYGFYSGGKAYVGQ-DSITRWIVDPLNGIT 91
+S KG +D V + + I + + P + +G S W +DPL+G T
Sbjct: 104 ISYKGLTDLVTDTDKASEAAILEVVRKNFPDHLILGEEGGVIGDSSSDYLWCIDPLDGTT 163
Query: 92 NFFYAIPHFCISIA-LERDQEIIASVI-F--NPI--TDELYTAERGIGSFLNDRRIRVSS 145
NF + P F +S+ L R A+V+ F P+ ++A G G+F N ++I VS
Sbjct: 164 NFAHGYPSFAVSVGVLFRGTPAAATVVEFVGGPMCWNTRTFSASAGGGAFCNGQKIHVSQ 223
Query: 146 RRILSNSII----------CYAT----FKRNSRFLMQLCRIMDEAVGVRSFGSEALDLAY 191
+ S++ +AT FK + R GVR G+ A+D+ +
Sbjct: 224 TDKVERSLLVTGFGYEHDDAWATNIELFKE----FTDVSR------GVRRLGAAAVDMCH 273
Query: 192 IAAGRFDGFLGKGLSIWCVAAGLLIICEAGGFATDFLGKNMGAETKSIISGNMPIHEQLL 251
+A G + + L W +AAG+LI+ EAGG T G +S++ N +H +LL
Sbjct: 274 VALGIVEAYWEYRLKPWDMAAGVLIVEEAGGTVTRMDGGKFSVFDRSVLVSNGVLHPKLL 333
Query: 252 AII 254
I
Sbjct: 334 DRI 336
>gnl|CDD|162680 TIGR02067, his_9_proposed, histidinol-phosphate phosphatase HisN,
inositol monophosphatase family. This subfamily belongs
to the inositol monophosphatase family (pfam00459). The
members of this family consist of no more than one per
species and are found only in species in which histidine
is synthesized de novo but no histidinol phosphatase can
be found in either of the two described families
(TIGR01261, TIGR01856). In at least one species, the
member of this family is found near known histidine
biosynthesis genes.
Length = 251
Score = 89.3 bits (222), Expect = 8e-19
Identities = 69/247 (27%), Positives = 109/247 (44%), Gaps = 12/247 (4%)
Query: 16 KAGKFLSRDFGEVQDLQVSRKGPSDFVMKSHSKCQEIIYQELLGARPKYGFYSG---GKA 72
A F L V +K + + E +EL+ A G G
Sbjct: 10 DAAGETILPFFRASLLVVDKK-SDKTPVTEADRAAEEAMRELIAAFFPDHGILGEEFGHN 68
Query: 73 YVGQDSITRWIVDPLNGITNFFYAIPHFCISIALERDQEIIASVIFNPITDELYTAERGI 132
D+ W++DP++G +F +P + IAL + VIF P T E + A G
Sbjct: 69 -EEGDAERVWVLDPIDGTKSFIRGVPVWGTLIALVEGGMPVLGVIFQPATGERWWAAGGG 127
Query: 133 GSFLNDRRIRVSSRRILSNSIICYAT----FKRNSRFLMQLCRIMDEAVGVRSFGSEALD 188
+FL RR+RVSS LS++++ + +R Q R +A + +G +
Sbjct: 128 AAFLGGRRLRVSSCANLSDAVLFTTSPYLLDDPENRPAFQRLR---DAARLTRYGGDCYA 184
Query: 189 LAYIAAGRFDGFLGKGLSIWCVAAGLLIICEAGGFATDFLGKNMGAETKSIISGNMPIHE 248
+A G D + GLS W +AA + +I EAGG TD+ GK ++ +GN +H+
Sbjct: 185 YLMVAGGAVDIVVEPGLSPWDIAALIPVIEEAGGCFTDWDGKPAPDGGGAVAAGNAMLHD 244
Query: 249 QLLAIIN 255
+ LAI+N
Sbjct: 245 EALAILN 251
>gnl|CDD|184490 PRK14076, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional.
Length = 569
Score = 77.1 bits (190), Expect = 4e-15
Identities = 57/205 (27%), Positives = 97/205 (47%), Gaps = 36/205 (17%)
Query: 83 IVDPLNGITNFFYAIPHFCISIAL-------ERDQEIIAS----------VIFNPITDEL 125
++DP++G N IP + SIA+ ++ +E I V+ N T +
Sbjct: 85 VLDPIDGTYNALKDIPIYSASIAIAKIDGFDKKIKEFIGKNLTINDLEVGVVKNIATGDT 144
Query: 126 YTAERGIGSFL----NDRRIRVSSRRILSNSII---CYATFKRNSRFLMQLCRIMDEAVG 178
Y AE+G G++L ++I +S+ L ++ I Y +F+ +
Sbjct: 145 YYAEKGEGAYLLKKGEKKKIEISNISNLKDASIGLFAYGLSLDTLKFIKD-----RKVRR 199
Query: 179 VRSFGSEALDLAYIAAGRFDGF--LGKGLSIWCVAAGLLIICEAGGFATDFLGK--NMG- 233
+R FGS AL++ Y+A+G D F + + + +AAG +I EAGG T+ GK NM
Sbjct: 200 IRLFGSIALEMCYVASGALDAFINVNETTRLCDIAAGYVICKEAGGIITNKNGKPLNMKL 259
Query: 234 --AETKSIISGNMPIHEQLLAIIND 256
E S+I N +H++L+ I +
Sbjct: 260 DINEKTSVICSNEILHKKLVGIFGN 284
>gnl|CDD|130398 TIGR01331, bisphos_cysQ, 3'(2'),5'-bisphosphate nucleotidase,
bacterial. Sulfate is incorporated into
3-phosphoadenylylsulfate, PAPS, for utilization in
pathways such as methionine biosynthesis. Transfer of
sulfate from PAPS to an acceptor leaves adenosine
3'-5'-bisphosphate, APS. This model describes a form
found in bacteria of the enzyme 3'(2'),5'-bisphosphate
nucleotidase, which removes the 3'-phosphate from APS to
regenerate AMP and help drive the cycle.
Length = 249
Score = 50.5 bits (121), Expect = 5e-07
Identities = 37/158 (23%), Positives = 59/158 (37%), Gaps = 15/158 (9%)
Query: 82 WIVDPLNGITNFFYAIPHFCISIALERDQEIIASVIFNPITDELYTAERGIGSFL----N 137
W+VDPL+G F F ++IAL + V++ P T Y A G +
Sbjct: 79 WLVDPLDGTKEFINRNGDFTVNIALVEHGVPVLGVVYAPATGVTYFATAGKAAKREGDGQ 138
Query: 138 DRRIRVSSRRILSNSIICYATFKRN----SRFLMQLCRIMDEAVGVRSFGSEALDLAYIA 193
+ + R S ++ + + +L L +R+ G +L +A
Sbjct: 139 ALKAPIHVRPWPSGPLLVVISRSHAEEKTTEYLANL------GYDLRTSGGSSLKFCLVA 192
Query: 194 AGRFDGFLGKG-LSIWCVAAGLLIICEAGGFATDFLGK 230
G D + G W AAG ++ AGG D G
Sbjct: 193 EGSADIYPRLGPTGEWDTAAGHAVLAAAGGAIFDLDGS 230
>gnl|CDD|178499 PLN02911, PLN02911, inositol-phosphate phosphatase.
Length = 296
Score = 48.6 bits (116), Expect = 2e-06
Identities = 46/208 (22%), Positives = 80/208 (38%), Gaps = 40/208 (19%)
Query: 68 SGGKAYVGQDSITRWIVDPLNGITNFFYAIPHFCISIALERDQEIIASVIFNPITDELYT 127
G YV W++DP++G +F P F IAL + + +I P+ E +
Sbjct: 105 EGSSDYV-------WVLDPIDGTKSFITGKPLFGTLIALLYKGKPVLGIIDQPVLKERWV 157
Query: 128 AERGIGSFLNDRRIRVSSRRILSNSIICYAT------------FKRNSRFLMQLCRIMDE 175
G + LN I S L ++ + Y T F R + +
Sbjct: 158 GVAGRATTLNGEEISTRSCASLKDAYL-YTTSPHMFSGDAEDAFAR-----------VRD 205
Query: 176 AVGVRSFGSEALDLAYIAAGRFDGFLGKGLSIWCVAAGLLIICEAGGFATDFLGKNM--- 232
V V +G + +A+G D + GL + A + ++ AGG TD+ G+ +
Sbjct: 206 KVKVPLYGCDCYAYGLLASGHVDLVVESGLKPYDYLALVPVVEGAGGVITDWKGRKLRWE 265
Query: 233 ------GAETKSIISGNMPIHEQLLAII 254
+ +G+ +H+Q L I+
Sbjct: 266 PSPGSLATSFNVVAAGDARLHKQALDIL 293
>gnl|CDD|182848 PRK10931, PRK10931, adenosine-3'(2'),5'-bisphosphate nucleotidase;
Provisional.
Length = 246
Score = 40.1 bits (94), Expect = 5e-04
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 82 WIVDPLNGITNFFYAIPHFCISIALERDQEIIASVIFNPITDELYTAERG 131
W+VDPL+G F F ++IAL + + V++ P+ + +Y+A G
Sbjct: 80 WLVDPLDGTKEFIKRNGEFTVNIALIEQGKPVLGVVYAPVMNVMYSAAEG 129
>gnl|CDD|162304 TIGR01330, bisphos_HAL2, 3'(2'),5'-bisphosphate nucleotidase, HAL2
family. Some members of this family are active also as
inositol 1-monophosphatase.
Length = 353
Score = 38.3 bits (89), Expect = 0.002
Identities = 66/287 (22%), Positives = 112/287 (39%), Gaps = 65/287 (22%)
Query: 16 KAGKFLSRDFGEVQDLQV---SRKGPSDFVMKSHSKCQEIIYQELLGARPKYGFYSGGKA 72
+A L R V + V + K F +KS +II G Y GG+
Sbjct: 79 EADFTLGRVNELVNETLVYAKNYKKDDQFPLKSLEDVLQIIDF---------GNYEGGRK 129
Query: 73 YVGQDSITRWIVDPLNGITNFFYAIPHFCISIALERDQEIIASVI--------FNPITDE 124
G+ W++DP++G F + + +AL + +++ VI +
Sbjct: 130 --GR----HWVLDPIDGTKGFLRG-DQYAVCLALIENGKVVLGVIGCPNLPLSSYGAQNL 182
Query: 125 --------LYTAERGIGSFL----NDR----RIRVSSRRILSNSIICYATFKRNSRFLMQ 168
++ A RG G+F+ +D ++ VSS + ++I C K +S Q
Sbjct: 183 KGSESKGCIFRAVRGSGAFMYSLSSDAESPTKVHVSSVKDTKDAIFCEGVEKGHSSHDEQ 242
Query: 169 --LCRIMDEAVGVRSFGSEALDLAYIAAGRFDG-----FLGKGL---SIWCVAAGLLIIC 218
+ + + S+A Y A R D K IW AAG +I+
Sbjct: 243 TAIANKLGISKSPLRLDSQA---KYAALARGDADVYLRLPIKLSYQEKIWDHAAGNVIVE 299
Query: 219 EAGGFATDFLGKNMG-------AETKSIISGNMP--IHEQLLAIIND 256
EAGG TD +GK + A K +I+ + P +H+ +++ D
Sbjct: 300 EAGGIVTDAMGKPLDFGKGRTLALDKGVIAASGPRVLHDLVVSTSCD 346
>gnl|CDD|162104 TIGR00915, 2A0602, The (Largely Gram-negative Bacterial)
Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. This
family is one of several subfamilies within the scope of
pfam model pfam00873.
Length = 1044
Score = 28.5 bits (64), Expect = 1.7
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 67 YSGGKAYVGQDSITRWIVDPLNGITNFFYAIPHFCISIALERDQEIIASVIFNPITDE 124
Y G A QD++T+ I +NGI Y +S + D + ++ F TD
Sbjct: 49 YPGASAQTVQDTVTQVIEQQMNGIDGLRY------MSSESDSDGSMTITLTFEQGTDP 100
>gnl|CDD|178702 PLN03157, PLN03157, spermidine hydroxycinnamoyl transferase;
Provisional.
Length = 447
Score = 27.1 bits (60), Expect = 4.4
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 184 SEALDLAYIAAGRFDGFLGKGLSIWCVAAG-LLIICEAGGFATDFLGKNMGAETKSIISG 242
S AL Y AGR G L + C A G LLI E+ DF + E + +I
Sbjct: 62 SRALVPFYPLAGRLRWIGGGRLELECNAMGVLLIEAESEAKLDDFGDFSPTPEFEYLIPS 121
Query: 243 ---NMPIHEQLLAII 254
PIHE L ++
Sbjct: 122 VDYTKPIHELPLLLV 136
>gnl|CDD|185081 PRK15127, PRK15127, multidrug efflux system protein AcrB;
Provisional.
Length = 1049
Score = 27.2 bits (60), Expect = 4.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 67 YSGGKAYVGQDSITRWIVDPLNGITNFFY 95
Y G A QD++T+ I +NGI N Y
Sbjct: 49 YPGADAKTVQDTVTQVIEQNMNGIDNLMY 77
>gnl|CDD|152204 pfam11768, DUF3312, Protein of unknown function (DUF3312). This is
a eukaryotic family of uncharacterized proteins.
Length = 544
Score = 26.2 bits (58), Expect = 8.2
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
Query: 99 HFCISIA---LER---DQEIIASVIFNPITDELYTAERGIGSFLNDRRI 141
H ++ LER D+ ++ +I ITD + T + SFLN+ ++
Sbjct: 60 HISLNPFGGDLERVVFDKYLVGKLISETITDAVLTDSHILLSFLNENQL 108
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.325 0.140 0.414
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,233,435
Number of extensions: 276716
Number of successful extensions: 563
Number of sequences better than 10.0: 1
Number of HSP's gapped: 546
Number of HSP's successfully gapped: 21
Length of query: 256
Length of database: 5,994,473
Length adjustment: 91
Effective length of query: 165
Effective length of database: 4,028,145
Effective search space: 664643925
Effective search space used: 664643925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.3 bits)