HHsearch alignment for GI: 254780157 and conserved domain: cd01539

>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=93.22  E-value=0.87  Score=26.54  Aligned_cols=86  Identities=15%  Similarity=0.121  Sum_probs=66.3

Q ss_pred             EEEEEECCCCCHH--HH-HHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH--
Q ss_conf             4999958816989--99-999999998099826545301038799998898765359829999726766851134652--
Q gi|254780157|r    6 PVAIIMGSQSDWK--IM-KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM--   80 (165)
Q Consensus         6 kV~Ii~GS~SD~~--~~-~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~--   80 (165)
T Consensus         1 kIGv~~~~~~npF~~~~~~g~e~~a~e~g~~v~~~~~da~~D~~~Q~~~Ie~~I~qgvD~Iii~p~d~~~~~~~i~~A~~   80 (303)
T cd01539           1 KIGVFLYKFDDTFISLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTAAQTVINKAKQ   80 (303)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf             98999648899899999999999999859957999707878999999999999975999999946873348999999996


Q ss_pred             CCCCEEEECCC
Q ss_conf             24203661257
Q gi|254780157|r   81 TSLPVLGVPII   91 (165)
Q Consensus        81 t~~PVIgVP~~   91 (165)
T Consensus        81 agIPVI~~d~~   91 (303)
T cd01539          81 KNIPVIFFNRE   91 (303)
T ss_pred             CCCEEEEECCC
T ss_conf             69849998787