HHsearch alignment for GI: 254780157 and conserved domain: cd01539
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=93.22 E-value=0.87 Score=26.54 Aligned_cols=86 Identities=15% Similarity=0.121 Sum_probs=66.3
Q ss_pred EEEEEECCCCCHH--HH-HHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHH--
Q ss_conf 4999958816989--99-999999998099826545301038799998898765359829999726766851134652--
Q gi|254780157|r 6 PVAIIMGSQSDWK--IM-KYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAM-- 80 (165)
Q Consensus 6 kV~Ii~GS~SD~~--~~-~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~-- 80 (165)
T Consensus 1 kIGv~~~~~~npF~~~~~~g~e~~a~e~g~~v~~~~~da~~D~~~Q~~~Ie~~I~qgvD~Iii~p~d~~~~~~~i~~A~~ 80 (303)
T cd01539 1 KIGVFLYKFDDTFISLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTAAQTVINKAKQ 80 (303)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 98999648899899999999999999859957999707878999999999999975999999946873348999999996
Q ss_pred CCCCEEEECCC
Q ss_conf 24203661257
Q gi|254780157|r 81 TSLPVLGVPII 91 (165)
Q Consensus 81 t~~PVIgVP~~ 91 (165)
T Consensus 81 agIPVI~~d~~ 91 (303)
T cd01539 81 KNIPVIFFNRE 91 (303)
T ss_pred CCCEEEEECCC
T ss_conf 69849998787