HHsearch alignment for GI: 254780157 and conserved domain: cd06305
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=92.70 E-value=1 Score=26.07 Aligned_cols=82 Identities=18% Similarity=0.208 Sum_probs=63.6
Q ss_pred EEEEEECCCCC-H--HHHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHC-
Q ss_conf 49999588169-8--9999999999980998265453010387999988987653598299997267668511346522-
Q gi|254780157|r 6 PVAIIMGSQSD-W--KIMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAAMT- 81 (165)
Q Consensus 6 kV~Ii~GS~SD-~--~~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~~t- 81 (165)
T Consensus 1 kIa~~~~~~~~~f~~~~~~G~~~~A~~~G~~--~~v~d~~~d~~~Q~~~i~~~i~~~vDgIii~p~d~~~~~~~l~~a~~ 78 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGD--LRVYDAGGDDAKQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKRALD 78 (273)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCE--EEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 9899971788979999999999999974998--99973999999999999999985999999946871444899999998
Q ss_pred -CCCEEEEC
Q ss_conf -42036612
Q gi|254780157|r 82 -SLPVLGVP 89 (165)
Q Consensus 82 -~~PVIgVP 89 (165)
T Consensus 79 aGIPVV~~d 87 (273)
T cd06305 79 AGIPVVAFD 87 (273)
T ss_pred CCCCEEEEC
T ss_conf 599789981