HHsearch alignment for GI: 254780157 and conserved domain: cd06321
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=94.14 E-value=0.6 Score=27.57 Aligned_cols=129 Identities=16% Similarity=0.188 Sum_probs=87.6
Q ss_pred EEEEEECCCCCHH---HHHHHHHHHHHCCCCEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHH--H
Q ss_conf 4999958816989---9999999999809982654530103879999889876535982999972676685113465--2
Q gi|254780157|r 6 PVAIIMGSQSDWK---IMKYAADMLDTLGIDYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAA--M 80 (165)
Q Consensus 6 kV~Ii~GS~SD~~---~~~~a~~~L~~~gI~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~--~ 80 (165)
T Consensus 1 KIGvivp~i~npff~~~~~gie~~a~~~g~~~~v~~~~~~~d~~~q~~~i~~li~~~vDgIii~~~~~~~~~~~i~~a~~ 80 (271)
T cd06321 1 KIGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAVDSKGIAPAVKRAQA 80 (271)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 98999489989899999999999999719976999807988999999999999974998899934784035999999997
Q ss_pred CCCCEEEECCCCCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHC--------------CCHHHHHHHH
Q ss_conf 24203661257766675001699840356986204431675312289999999706--------------9999999999
Q gi|254780157|r 81 TSLPVLGVPIISQTLGGIDSLLSIVQMPAGVPVGTMAIGQSGAINASLLAVAILAL--------------DDKELTDRLN 146 (165)
Q Consensus 81 t~~PVIgVP~~~~~~~G~dallS~vqMP~Gvpvatv~vg~~~~~NAal~A~~Il~~--------------~d~~i~~kl~ 146 (165)
T Consensus 81 ~gIpvV~~d~~~---~~~~--------------~~--V~~dn-~~~g~~a~~~L~~~~~~~~~i~~~~g~~~~~~~~R~~ 140 (271)
T cd06321 81 AGIVVVAVDVAA---EGAD--------------AT--VTTDN-VQAGEISCQYLADRLGGKGNVAILNGPPVSAVLDRVA 140 (271)
T ss_pred CCCEEEEEEECC---CCCC--------------CE--EEECH-HHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHH
T ss_conf 499189986058---9987--------------28--99769-9999999987887528960799975998535999999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780157|r 147 EWRTQQTI 154 (165)
Q Consensus 147 ~~r~~~~~ 154 (165)
T Consensus 141 G~~~~l~~ 148 (271)
T cd06321 141 GCKAALAK 148 (271)
T ss_pred HHHHHHHH
T ss_conf 99999987