HHsearch alignment for GI: 254780157 and conserved domain: cd06325
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=91.50 E-value=1.4 Score=25.25 Aligned_cols=84 Identities=20% Similarity=0.124 Sum_probs=60.1
Q ss_pred EEEEEECC--CCCHHHHHHHHHHHHHCCC----CEEEEEEEHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHH
Q ss_conf 49999588--1698999999999998099----82654530103879999889876535982999972676685113465
Q gi|254780157|r 6 PVAIIMGS--QSDWKIMKYAADMLDTLGI----DYEARIISAHRTPDRLIEFAKNARFEGFKLIIAGAGGAAHLPGMIAA 79 (165)
Q Consensus 6 kV~Ii~GS--~SD~~~~~~a~~~L~~~gI----~~~~~V~SAHR~p~~l~~~~~~~~~~~~~viIa~AG~aaaLpgvva~ 79 (165)
T Consensus 1 ~igi~q~~~h~~ld~~~~Gf~~~L~~~G~~~g~nv~~~~~na~gd~~~l~~ia~~l~~~~~DlIva~gTpaaq--a~~~~ 78 (281)
T cd06325 1 KVGILQLVEHPALDAARKGFKDGLKEAGYKEGKNVKIDYQNAQGDQSNLPTIARKFVADKPDLIVAIATPAAQ--AAANA 78 (281)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCHHHHH--HHHHC
T ss_conf 9389983376747999999999999649767983799996079999999999999985499999987709999--99962
Q ss_pred HCCCCEEEECCC
Q ss_conf 224203661257
Q gi|254780157|r 80 MTSLPVLGVPII 91 (165)
Q Consensus 80 ~t~~PVIgVP~~ 91 (165)
T Consensus 79 ~~~iPIVF~~V~ 90 (281)
T cd06325 79 TKDIPIVFTAVT 90 (281)
T ss_pred CCCCCEEEEECC
T ss_conf 799998999516